BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036072
         (631 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/642 (61%), Positives = 473/642 (73%), Gaps = 46/642 (7%)

Query: 11  ISILLGHSLDSQSHYSTLSRSYGNGYGQLYSTTTELLSLNQR---QRRGAKRVHGDGGAK 67
           +++ L H  DSQ  Y         G   ++STT +L SL+QR   QRRG +        +
Sbjct: 18  LTLFLRHHTDSQLPY---------GPCCVFSTT-KLRSLHQRRPPQRRGEQ-------VR 60

Query: 68  CSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNH 127
              GS+L LSRLL  S  C+ + S CQ+P LLPH S L +LQK LL        S+L + 
Sbjct: 61  LPCGSSLPLSRLLRSSLNCTFHHSRCQIPFLLPHPSPLLTLQKKLLIPHLATF-SALPSS 119

Query: 128 NLATNILDSNCVNYRNVSSVTD---DNQDSDGECDGNNSESEITSVSYKSTADPREIERV 184
                    N  + R  +S  D   +N D D +    +   +   VS +S ADP E+ERV
Sbjct: 120 PFHEKFPFLN--SPRTFASNADSGVENDDDDDDGGDGDKGYDGRGVSGESCADPVEVERV 177

Query: 185 CKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHN 244
           CKVIDELF+LDRNME VLDECG+ LSH+LVVDVL+RF+HAR+PAFRFFCWAG +PGFAH+
Sbjct: 178 CKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAHD 237

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304
           SRTYN MM +LGR RQFETMV+MLEEMGEKGLL+METF IA+ AFA AK+RKKAV IF+L
Sbjct: 238 SRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFDL 297

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           M KY FK GVD IN LL++L  +KL KEAQ +F+KLK RFTP+L TYT+LL GWCR+KNL
Sbjct: 298 MKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNL 357

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +EAGRVWNEMID+GF PDVVAHN+MLEGLLK  K+SDAIKLFE+MKAKGPSPNVRSYTIM
Sbjct: 358 LEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIM 417

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  FCKQ                    +AA+YTCLITGFG +++MD+VY LLKEM ERGC
Sbjct: 418 IQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGC 477

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PPDG TYNALIKLM  Q MPD+AVRIYK+M++SG KPTIHTYNMIMKSYF T NYEMG +
Sbjct: 478 PPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHE 537

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +WDEM ++GCCPDDNSY V IGGLI QDRSGEA KYLEEMLEKGMKAP LDYNKFA+D+S
Sbjct: 538 IWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDIS 597

Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
           + G + +L+ELA+KM F GKFEVSNVLA WA+  K    R++
Sbjct: 598 KTGNAVILEELARKMNFVGKFEVSNVLASWADMMKKSAKRRE 639


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/511 (71%), Positives = 419/511 (81%), Gaps = 25/511 (4%)

Query: 136 SNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLD 195
           S C  + + + + DD+ + D +C+  N++ E       S+ADP E++RVCKVIDELF+LD
Sbjct: 25  SKCGGFSSDTEI-DDDCNEDNKCESGNNDGE----KINSSADPVEVDRVCKVIDELFALD 79

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           RNMEAVLDECGINLSH+LV+DVLERF HAR+PAFRFFCWAG+K GF H+SRTYNSMMSIL
Sbjct: 80  RNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSIL 139

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
            + RQFET+VSMLEEMG KG+L+M+TF IAM AFAAAKERKKAVA+FELM KY +K GV+
Sbjct: 140 AKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVE 199

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           TIN LL++LGR+KL KEAQ LF+ LK RFTPNL TYTVLL GWC+VKNLMEAG VWNEMI
Sbjct: 200 TINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMI 259

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---- 431
           DKGFKPD+VAHNIMLEGLL+  +RSDAIKLF VMKAKGPSP+VRSYTI+I   C+Q    
Sbjct: 260 DKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKME 319

Query: 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                           +AAVYTCLITGFGNR+RMD+VYDLLKEM+E GCPPDGLTYNALI
Sbjct: 320 EAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALI 379

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           KLM   KMPD+A RIYK+M +SG +PTIHTYNMIMKSYFQT NYEMGR VWDEM R+G C
Sbjct: 380 KLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFC 439

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PDDNSYTVLIGGLISQ RSGEA KYLEEMLEKGMKAP LDYNKF ADLSR G   +L+EL
Sbjct: 440 PDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSRGGNPDILEEL 499

Query: 596 AQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
           AQ+++FSGKF VSNVLA WA   + RV R+D
Sbjct: 500 AQRLKFSGKFGVSNVLASWAGMIQKRVKRRD 530


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/497 (70%), Positives = 410/497 (82%), Gaps = 26/497 (5%)

Query: 149 DDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGIN 208
           D+N +SD      N E E      KSTADP E+ +VCKVIDELF+LD NMEAVLDECGIN
Sbjct: 50  DENDESD------NCERENKGAIVKSTADPAEVHKVCKVIDELFALDHNMEAVLDECGIN 103

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           LSH+LV++VLERFRHAR+PAFRFFCWA +KPGF H+SRTY+SMM IL +ARQFETM+SML
Sbjct: 104 LSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSMMIILAKARQFETMMSML 163

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EEMGEK LL+++TF IAM AFAAAKERKKAV IFELM  +K++ GV+TIN LL++LGR+K
Sbjct: 164 EEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAK 223

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L KEAQ LF KL+ RFTPNL TYTVLL GWCRVKNLMEAGR+WNEM+D+GFKPD+V HNI
Sbjct: 224 LGKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNI 283

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           MLEGLL+  KRSDAIK FEVMKAKGPSP+VRSYTI+I   CKQ                 
Sbjct: 284 MLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSG 343

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              +AAVYTCL+TG+GN +RMD+VY+LLKEM+E+GCPPDG TYNALIKLM  Q+MPD+AV
Sbjct: 344 CHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAV 403

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           RIYK+M+++G +P+IH+YNMIMKSYF+  NYEMG  VWDEM ++G CPDDNSYTV IGGL
Sbjct: 404 RIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGL 463

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
           ISQ RS EA KYLEEM+EKGMKAP LDYNKFAAD SRAG+  +L+ELAQKM+FSGKFEVS
Sbjct: 464 ISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAQKMKFSGKFEVS 523

Query: 609 NVLARWAETTKNRVYRK 625
           NV ARWAE  K RV R+
Sbjct: 524 NVFARWAEMMKKRVKRR 540


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/603 (61%), Positives = 446/603 (73%), Gaps = 56/603 (9%)

Query: 85  YCSLYRSHCQVPCLLPHSSSL--HSLQKVLLNKSTNVVASSL------------------ 124
           +C  +R HC+VP LLPH SSL     Q +  N + +++ S                    
Sbjct: 73  HCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPNSTPSLLGSPQFLGFFSRGFAGALGGDQH 132

Query: 125 TNHNLATNILDSNCVNY---------------RNVSSVTDDNQDSDGECDGN-NSESEIT 168
           ++     ++ D+  V+Y               R  S V+    DSD E DG+ N   ++ 
Sbjct: 133 SDPEPDGDVGDNGVVDYDGALVNSGADTEEKSRGFSRVSQGETDSDPETDGDENVGGDLD 192

Query: 169 SVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA 228
            V+  S ADP E+ RVC+VIDELF+LDRNMEAVLDEC ++LSH LVV VLERF+HAR+PA
Sbjct: 193 EVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPA 252

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288
           FRFFCWAG K GF HNSRTYN+MMS+LGR RQFE+M+ ML EMGEKGLL+METF IA+ A
Sbjct: 253 FRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKA 312

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
           FAAAKERKKAV +FELM +Y F AGVDTINCLL+NLGR+KL KEAQ LF+KL+ RFTPNL
Sbjct: 313 FAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNL 372

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TYTVLL GWCR+KNL+EAGR WNEMIDKGFKPD++AH+ MLEGLLK  K+SDAIKLFEV
Sbjct: 373 RTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEV 432

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
           MKAKGPSPNVR+YTI+I   CKQ                    +AAVYTCLITGFGN+++
Sbjct: 433 MKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKK 492

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           MD VY LLKEM+E+GCP DG TYNALIKLM  ++MPD+AVRIYK+M+++G +PT+HTYNM
Sbjct: 493 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNM 552

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +MKSYF T NYEMG  VW EM R+GCCPDDNSY V IGGLI   RS EA +YLEEM+EKG
Sbjct: 553 MMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
           MKAP LDYNKFAAD SRAG+  +L+ELA+KM+F GKFEVSNV ARWAE  K RV R+D +
Sbjct: 613 MKAPQLDYNKFAADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPV 672

Query: 629 ETD 631
           ++D
Sbjct: 673 KSD 675


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/603 (61%), Positives = 444/603 (73%), Gaps = 56/603 (9%)

Query: 85  YCSLYRSHCQVPCLLPHSSSL--HSLQKVLLNKSTNVVASSL------------------ 124
           +C  +R HC+VP LLPH SSL     Q +  N + +++ S                    
Sbjct: 73  HCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPNSTPSLLGSPQFLGSFSRGFARALGGDQH 132

Query: 125 TNHNLATNILDSNCVNY---------------RNVSSVTDDNQDSDGECDGN-NSESEIT 168
           ++     ++ D+   +Y               R  S V+    DSD E DG+ N   +  
Sbjct: 133 SDPEPDGDVGDNGVGDYDGALVNSGADTEEKSRGFSRVSQGETDSDPETDGDENVGGDFD 192

Query: 169 SVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA 228
            V+  S ADP E+ RVC+VIDELF+LDRNMEAVLDEC ++LSH LVV VLERF+HAR+PA
Sbjct: 193 EVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPA 252

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288
           FRFFCWAG K GF HNSRTYN+MMS+LGR RQFE+M+ ML EMGEKGLL+METF IA+ A
Sbjct: 253 FRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKA 312

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
           FAAAKERKKAV +FELM +Y F AGVDTINCLL+NLGR+KL KEAQ LF+KL+ RFTPNL
Sbjct: 313 FAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNL 372

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TYTVLL GWCR+KNL+EAGR WNEMIDKGFKPD++AH+ MLEGLLK  K+SDAIKLFEV
Sbjct: 373 RTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEV 432

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
           MKAKGPSPNVR+YTI+I   CKQ                    +AAVYTCLITGFGN+++
Sbjct: 433 MKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKK 492

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           MD VY LLKEM+E+GCP DG TYNALIKLM  ++MPD+AVRIYK+M+++G + T+HTYNM
Sbjct: 493 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNM 552

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +MKSYF T NYEMG  VW+EM R+GCCPDDNSY V IGGLI   RS EA +YLEEM+EKG
Sbjct: 553 MMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
           MKAP LDYNKFAAD SRAG+  +L+ELA+KM+F GKFEVSNV ARWAE  K RV R+D +
Sbjct: 613 MKAPQLDYNKFAADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPV 672

Query: 629 ETD 631
           ++D
Sbjct: 673 KSD 675


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/581 (61%), Positives = 435/581 (74%), Gaps = 45/581 (7%)

Query: 72  STLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLAT 131
           S+L L  +    S+ S + SHCQ+P +LP++SS    Q+ LL      + S+L       
Sbjct: 49  SSLPLFSMFDSPSHRSFHYSHCQIPFILPYASSFSVPQEKLL------IVSTLRT----- 97

Query: 132 NILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKST------ADPREIERVC 185
                  +++RN    + D   + G CD +N +S+      KS        D  E+ RVC
Sbjct: 98  -------IDFRNPPFPSLDLL-ARGFCDLSNPDSDSEIECEKSEEEDNRECDSTEVNRVC 149

Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNS 245
           KVIDELF+LDRNMEAVLDECG+ LSH+LV++VL RF+ AR+PAFRFFCWA  KPGFAH+S
Sbjct: 150 KVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDS 209

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +TYN+MM+ILG+ RQFETMVS+LEEM EK LL+METF +   AFAAAKERKKAV + ELM
Sbjct: 210 KTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKAVGVLELM 269

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
            KYK+K GV+TINCLL++LGR+KL KEA  +F+KL  RFTPNL TYTVLL GWCRV+NLM
Sbjct: 270 KKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLM 329

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EAG++WN+MID+ FKPD+VAHN MLEGLL+  KRSDAIKLFEVMKAKGPSP+V+SYTI++
Sbjct: 330 EAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILV 389

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             FCKQ                    +AA+YTCLITGFGN++RMD VY LLKEM+  GCP
Sbjct: 390 RDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCP 449

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PDG TYNALIKLM  ++MPD+AVRIYK+M+ +G KPT HTY+M+MKSYFQT NYEMG   
Sbjct: 450 PDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAA 509

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           WDEM  +GCCPDDNSYTV IGGLIS  R  EA KYLEEM+EKGMKAP LDYNKFAAD SR
Sbjct: 510 WDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSR 569

Query: 586 AGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
           AGR  +L+ELAQKM+FSGKFE SNV+ARWAE  + RV R++
Sbjct: 570 AGRPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVKRRN 610


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/477 (71%), Positives = 393/477 (82%), Gaps = 20/477 (4%)

Query: 170 VSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
           VS +S ADP E+ERVCKVIDELF+LDRNME VLDECG+ LSH+LVVDVL+RF+HAR+PAF
Sbjct: 25  VSGESCADPVEVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAF 84

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           RFFC AG +PGFAH+SRTYN MM +LGR RQFETMV+ LEEMGEKGLL+METF IA+ AF
Sbjct: 85  RFFCXAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAF 144

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A AK+RKK V IF+LM KY FK GVD IN LL++L  +KL KEAQ +F+KLK RFTP+L 
Sbjct: 145 AEAKQRKKEVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQ 204

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TYT+LL GWCR+KNL+EAGRVWNEMID+GF PD+VAHN+MLEGLLK  K+SDAIKLFE+M
Sbjct: 205 TYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIM 264

Query: 410 KAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRM 449
           KAKGPSPNVRSYTIMI  FCKQ                    +AA+YTCLITGFG +++M
Sbjct: 265 KAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKM 324

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D+VY LLKEM ERGCPPDG TYNALIKLM  Q MPD+AVRIYK+M++SG KPTIHTYNMI
Sbjct: 325 DMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMI 384

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           MKSYF T NYEMG ++WDEM  +GCCPDDNSY V IGGLI QDRSGEA KYLEEMLEKGM
Sbjct: 385 MKSYFVTKNYEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGM 444

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
           KA  LDYNKFA+D+S+ G + +L+ELA+KM F GKFEVSNVLA WA+  K    RK+
Sbjct: 445 KALKLDYNKFASDISKTGNAVILEELARKMNFVGKFEVSNVLASWADMMKKSAKRKE 501


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/591 (59%), Positives = 440/591 (74%), Gaps = 60/591 (10%)

Query: 59  RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
           RV G  G +  R S    SR++H S+Y   YR   Q+P  LPHSS               
Sbjct: 41  RVIGGRGEEEVRFSGALFSRMIHSSTYHP-YR---QIP--LPHSS--------------- 79

Query: 119 VVASSLTNHNLATNILDSN--CVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKS 174
                         +LD++  C  + + SS   D  +++ + ECD N+ E+ ++ V  +S
Sbjct: 80  ------------VQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ES 124

Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
           + +P E+ERVCKVIDELF+LDRNMEAVLDE  ++LSH+L+V+VLERFRHAR+PAFRFFCW
Sbjct: 125 STNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCW 184

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           A ++ GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKE
Sbjct: 185 AAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           RKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVL
Sbjct: 245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L GWCRV+NL+EA R+WN+MID+G KPD+VAHN+MLEGLL+  K+SDAIKLF VMK+KGP
Sbjct: 305 LNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGP 364

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PNVRSYTIMI  FCKQ                    +AAVYTCLITGFG ++++D VY+
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYE 424

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LLKEM+E+G PPDG TYNALIKLM  QKMP+ A RIY +M+++  +P+IHT+NMIMKSYF
Sbjct: 425 LLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYF 484

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
              NYEMGR VW+EMI++G CPDDNSYTVLI GLI + +S EA +YLEEML+KGMK P++
Sbjct: 485 MARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLI 544

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRK 625
           DYNKFAAD  R G+  + +ELAQ+ +FSGKF  + + ARWA+ T+ R  ++
Sbjct: 545 DYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRFKQR 595


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/587 (60%), Positives = 436/587 (74%), Gaps = 60/587 (10%)

Query: 59  RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
           RV G  G +  R S    SR++H S+Y   YR   Q+P  LPHSS               
Sbjct: 41  RVIGGRGEEEVRFSGALFSRMIHSSTY-HPYR---QIP--LPHSS--------------- 79

Query: 119 VVASSLTNHNLATNILDSN--CVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKS 174
                         +LD++  C  + + SS   D  +++ + ECD N+ E+ ++ V  +S
Sbjct: 80  ------------VQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ES 124

Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
           + +P E+ERVCKVIDELF+LDRNMEAVLDE  ++LSH+L+V+VLERFRHAR+PAFRFFCW
Sbjct: 125 STNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCW 184

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           A ++ GFAH SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKE
Sbjct: 185 AAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           RKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVL
Sbjct: 245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+  K+SDAIKLF VMK+KGP
Sbjct: 305 LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 364

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PNVRSYTIMI  FCKQ                    +AAVYTCLITGFG ++++D VY+
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYE 424

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LLKEM+E+G PPDG TYNALIKLM  QKMP+   RIY +M+++  +P+IHT+NMIMKSYF
Sbjct: 425 LLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYF 484

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
              NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLEEML+KGMK P++
Sbjct: 485 VARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLI 544

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           DYNKFAAD  R G+  + +ELAQ+ +FSGKF  + + ARWA+ T+ R
Sbjct: 545 DYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 591


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/585 (60%), Positives = 436/585 (74%), Gaps = 57/585 (9%)

Query: 59  RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
           RV G  G +  R S    SR++H S+Y   YR   Q+P  LPHS  L             
Sbjct: 41  RVIGGRGEEEVRFSGALFSRMIHSSTY-HPYR---QIP--LPHSVQL------------- 81

Query: 119 VVASSLTNHNLATNILDSNCVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKSTA 176
            + +SL             C  + + SS   D  +++ + ECD N+ E+ ++ V  +S+ 
Sbjct: 82  -LDASL------------GCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ESST 125

Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
           +P E+ERVCKVIDELF+LDRNMEAVLDE  ++LSH+L+V+VLERFRHAR+PAFRFFCWA 
Sbjct: 126 NPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 185

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           ++ GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKERK
Sbjct: 186 ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERK 245

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           KAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVLL 
Sbjct: 246 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 305

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+  K+SDAIKLF VMK+KGP P
Sbjct: 306 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 365

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           NVRSYTIMI  FCKQ                    +AAVYTCLITGFG ++++D VY+LL
Sbjct: 366 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 425

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           KEM+E+G PPDG TYNALIKLM  QKMP+   RIY +M+++  +P+IHT+NMIMKSYF  
Sbjct: 426 KEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVA 485

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLEEML+KGMK P++DY
Sbjct: 486 RNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDY 545

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           NKFAAD  R G+  + +ELAQ+ +FSGKF  + + ARWA+ T+ R
Sbjct: 546 NKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 590


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/589 (59%), Positives = 430/589 (73%), Gaps = 54/589 (9%)

Query: 56  GAKRV---HGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVL 112
           G  RV    G+G  + S  S+L  SR++  S+Y      H QV   LPHSS        L
Sbjct: 43  GQSRVIGGRGEGEVRFSAASSLPFSRMIQSSTY----HPHRQVS--LPHSSVQ------L 90

Query: 113 LNKSTNVVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSY 172
           L+ S      S  + +++ + ++S C           DN D  G         EI     
Sbjct: 91  LDASLGFRGFSSGSSDVSDDEIESEC-----------DNDDDVG--------IEIGVSCV 131

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
            S+ +P E+ERVCKVIDELF+LDRNMEAVLDE  + LSH+L+V VLERFRHAR+PAFRFF
Sbjct: 132 DSSTNPEEVERVCKVIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFF 191

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
           CWA +K GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAA
Sbjct: 192 CWAAEKQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAA 251

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
           KERKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYT
Sbjct: 252 KERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYT 311

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           VLL GWCRV+NL+EA R+WN+MID+G KPD+VAHN+MLEGLL+  K+SDAIKLF VMK+K
Sbjct: 312 VLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSK 371

Query: 413 GPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIV 452
           GP PNVRSYTIMI  FCKQ                    +AAVYTCLITGFG ++++D V
Sbjct: 372 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 431

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           Y+LLKEM+E+G PPDG TYNALIKLM  QKMP+ A RIY +M+++  +P+IHT+NMIMKS
Sbjct: 432 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKS 491

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           YF   NYEMG  VWDEMI++G CPDDNSYTVLI GLI + +S EA +YLEEML+KGMK P
Sbjct: 492 YFMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTP 551

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           ++DYNKFAAD  + G+  + +ELAQ+ +FSGKF  + + ARWA+ T+ R
Sbjct: 552 LIDYNKFAADFHKGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 600


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/567 (59%), Positives = 405/567 (71%), Gaps = 67/567 (11%)

Query: 85  YCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLATNILDSNCVNYRNV 144
           +C  +R HC+VP LLPH SSL      +L  + N   S L +     +         R  
Sbjct: 73  HCRHHRPHCEVPPLLPHPSSLCLPHPQVL--APNSTPSLLGSPQFLGSF-------SRGF 123

Query: 145 SSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDE 204
           +     +Q SD E DG+N   +   V+  S ADP E+ RVC+VIDELF+LDRNMEAVLDE
Sbjct: 124 ARALGGDQHSDPEPDGDNVGGDFDEVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDE 183

Query: 205 CGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264
           C ++LSH LVV VLERF+HAR+PAFRFFCWAG K GF HNSRTYN+MMS+LGR RQFE+M
Sbjct: 184 CNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESM 243

Query: 265 VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
           + ML EMGEKGLL+METF IA+ AFAAAKERKKAV +FELM +Y F AGVDTINCLL+NL
Sbjct: 244 MGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNL 303

Query: 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           GR+KL KEAQ LF+KL+ RFTPNL TYTVLL GWCR+KNL+EAGR WNEMIDKGFKPD++
Sbjct: 304 GRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDII 363

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
           AH+ MLEGLLK  K+SDAIKLFEVMKAKGPSPNVR+YTI+I   CKQ             
Sbjct: 364 AHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEM 423

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  +AAVYTCLITGFGN+++MD VY LLKEM+E+GCP DG TYNALIKLM  ++MP
Sbjct: 424 VDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMP 483

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+AVRIYK+M+++G + T+HTYNM+MKSYF T NYEMG                      
Sbjct: 484 DDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMG---------------------- 521

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
                             EM+EKGMKAP LDYNKFAAD SRAG+  +L+ELA+KM+F GK
Sbjct: 522 ----------------CAEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKFEGK 565

Query: 605 FEVSNVLARWAETTKNRVYRKDRIETD 631
           FEVSNV ARWAE  K RV R+D +++D
Sbjct: 566 FEVSNVFARWAEMMKKRVKRRDPVKSD 592


>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14820, mitochondrial-like [Glycine max]
          Length = 492

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 291/477 (61%), Positives = 347/477 (72%), Gaps = 68/477 (14%)

Query: 170 VSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
           VS +S ADP E+ERVCKVIDELF+LDRNMEAVLDECG+ LSH+LVVD+L+RF+HA  PAF
Sbjct: 55  VSGESCADPAEVERVCKVIDELFALDRNMEAVLDECGVRLSHDLVVDMLQRFKHAX-PAF 113

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           RFFCWAG +PGF H+SRTYN MM +LGR RQFETMV+MLEEMGE GLL+METF +A+  F
Sbjct: 114 RFFCWAGKRPGFDHDSRTYNCMMCVLGRTRQFETMVAMLEEMGEMGLLTMETFSVAIKTF 173

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A A +RKKA  IF+LM KY+FK GVD IN LL++L  +KL KEAQ +F+K          
Sbjct: 174 AEANQRKKAAGIFDLMKKYEFKVGVDVINFLLDSLSAAKLGKEAQAVFEK---------- 223

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
                              RVWNEMID+GFKPD+VAHN+MLEGLLK  K+SDA KLFE+M
Sbjct: 224 -------------------RVWNEMIDRGFKPDIVAHNVMLEGLLKC-KKSDAXKLFEIM 263

Query: 410 KAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRM 449
           KAK PSPNVRSYTIMI  FCKQ                    +AA+YTCLITGFG +++M
Sbjct: 264 KAKCPSPNVRSYTIMIQDFCKQKMMGEVVEYIDEMVDRECQPDAALYTCLITGFGXKKKM 323

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D+VY+LLKEM +RGC PDG TYNALIKL   Q+MPD+AVRIYK+M +SG KPTIHTYNMI
Sbjct: 324 DMVYNLLKEMRKRGCSPDGGTYNALIKLXTSQQMPDDAVRIYKKMSQSGIKPTIHTYNMI 383

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           M+SYF T NYE+G  +WD M ++GCCPDDNSY+V IG                 MLEKGM
Sbjct: 384 MRSYFVTKNYEIGHAIWDXMHQKGCCPDDNSYSVYIG-----------------MLEKGM 426

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
           KAP LDYNK A+D+S+ G + +L+ELA+KM F GK EVSNVLA WA+  K    R++
Sbjct: 427 KAPQLDYNKCASDISKIGNAVILEELARKMNFVGKSEVSNVLASWADMMKKSAKRRE 483


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/609 (44%), Positives = 378/609 (62%), Gaps = 66/609 (10%)

Query: 68  CSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSS-----------------SLHSLQK 110
           C     +S+  +L   S+  L+R+HC +  LLPHSS                 S      
Sbjct: 34  CHDSDAVSVPGVLPPRSHHHLHRTHCPLSPLLPHSSCPPHLPAPLPPPHLTSVSARIAGV 93

Query: 111 VLLNKSTNVVASSLTNHNLATNILDSNCVN------------YRNVSSVTDDNQDSDGEC 158
           VLL +    +    + + + + +L +                + ++ + +D++Q S    
Sbjct: 94  VLLPRGVFPLLPPRSRYVMGSPLLATPACGAYDVLWGFAAGRFLSILAASDEDQGS---- 149

Query: 159 DGNNSESEITSVSYKSTADPREIERVCKVIDELFS--LDRNMEAVLDECGINLSHNLVVD 216
               SE E       + ++P  ++RVC  I ++ +   D N+EA L      L   +V+ 
Sbjct: 150 ----SEQE------AAASNPEGVDRVCAAIADVVASGADANLEAALSALSPPLCEAVVLA 199

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           VL RF+HA RP++RFF WA    GF H + TY  M+ ILG+ RQFE+MV+M++EMG+ G 
Sbjct: 200 VLHRFKHAHRPSYRFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGA 259

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
           LSM+ FK+A+ +FAAA E K AV +FELM K  F  GV++ NCLL  L +  L +EA+ +
Sbjct: 260 LSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQV 319

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           FDK+  +++P+L +YT L+  WC  +NL+EAGRVWNEM++KG  PDVV HN M+EGLL+ 
Sbjct: 320 FDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRG 379

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
            +R +A+K+FE+MKAKGP PNV +YT++I   CKQ                    + A Y
Sbjct: 380 QRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATY 439

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           TCL+ G+GN ++MD V  +L+EM ++GCPPD  TYNALIKL+  + MPD+A RIYK+M++
Sbjct: 440 TCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIK 499

Query: 497 SGFKPTIHTYNMIMKSYF-QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
            G +PTIHTYNM+MKSYF    NY MG  VW+EM +RG CPD NSYTV I G I   R  
Sbjct: 500 KGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPE 559

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWA 615
           EAYKY+EEM+ KGMKAP +DYNKFAAD S+AG+  +L ELAQK++F+GK +VSNV  +WA
Sbjct: 560 EAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVKFAGKLDVSNVFYQWA 619

Query: 616 ETTKNRVYR 624
           +  K+RV R
Sbjct: 620 DRMKSRVKR 628


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/480 (52%), Positives = 333/480 (69%), Gaps = 23/480 (4%)

Query: 166 EITSVSYKSTADPREIERVCKVIDELFSL--DRNMEAVLDECGINLSHNLVVDVLERFRH 223
           E  S    +++ P  + RVC  I ++ +   D N+EA L      LS  LV+ VL+RF+H
Sbjct: 157 EGASPPQGASSHPEHVGRVCAAIADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKH 216

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283
           A RP+ RFF WA     F H   TY  M+ ILG+ARQFETMV++++EMG+ G L M+ FK
Sbjct: 217 AHRPSRRFFQWAAASDEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFK 276

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343
           IA+ +FAAA E K AV +FE+M  + F  GV++ NCLL  L +  L KEA  +FD+++ +
Sbjct: 277 IAIKSFAAAGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQ 336

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           +TP+L +YT L+  WC  +NL+EAGRVWN+M++KG KPDVV HN M++GLL+  +R +A+
Sbjct: 337 YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAV 396

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGF 443
           K+FE+MKAKGP PNV +YT++I   CKQ                      A YTCL+ G+
Sbjct: 397 KMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGY 456

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           GN +RMD V  +L+EM ++GCPPDG TYNALIKL+  + MPD+AVRIYK+M+  G +PTI
Sbjct: 457 GNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTI 516

Query: 504 HTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           HTYNM+MKSYF  G NY MG  VW+EM R+G CPD NSYTV I G I   R  EA K+LE
Sbjct: 517 HTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLE 576

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRV 622
           EM++KGMKAP +DYNKFAAD S+AG+  +L ELAQK++F+GKF+VSNV  +WAE  KNRV
Sbjct: 577 EMIQKGMKAPQIDYNKFAADFSKAGKPDILYELAQKVKFTGKFDVSNVFHQWAERMKNRV 636


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/609 (44%), Positives = 377/609 (61%), Gaps = 66/609 (10%)

Query: 68  CSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSS-----------------SLHSLQK 110
           C     +S+  +L   S+  L+R+HC +  LLPHSS                 S      
Sbjct: 34  CHDSDAVSVPGVLPPRSHHHLHRTHCPLSPLLPHSSCPPHLPAPLPPPHLTSVSARIAGV 93

Query: 111 VLLNKSTNVVASSLTNHNLATNILDSNCVN------------YRNVSSVTDDNQDSDGEC 158
           VLL +    +    + + + + +L +                + ++ + +D++Q S    
Sbjct: 94  VLLPRGVFPLLPPRSRYVMGSPLLATPACGAYDVLWGFAAGRFLSILAASDEDQGS---- 149

Query: 159 DGNNSESEITSVSYKSTADPREIERVCKVIDELFS--LDRNMEAVLDECGINLSHNLVVD 216
               SE E       + ++P  ++RVC  I ++ +   D N+EA L      L   +V+ 
Sbjct: 150 ----SEQE------AAASNPEGVDRVCAAIADVVASGADANLEAALSALSPPLCEAVVLA 199

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           VL RF+HA RP++RFF WA    GF H + TY  M+ ILG+ RQFE+MV+M++EMG+ G 
Sbjct: 200 VLHRFKHAHRPSYRFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGA 259

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
           LSM+ FK+A+ +FAAA E K AV +FELM K  F  GV++ NCLL  L +  L +EA+ +
Sbjct: 260 LSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQV 319

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           FDK+  +++P+L +YT L+  WC  +NL+EAGRVWNEM++KG  PDVV HN M+EGLL+ 
Sbjct: 320 FDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRG 379

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
            +R +A+K+FE+MKAKGP PNV +YT++I   CKQ                    + A Y
Sbjct: 380 QRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATY 439

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           TCL+ G+GN ++MD V  +L+EM ++GCPPD  TYNALIKL+  + MPD+A RIYK+M++
Sbjct: 440 TCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIK 499

Query: 497 SGFKPTIHTYNMIMKSYF-QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
            G +PTIHTYNM+MKSYF    NY MG  VW+EM +RG CPD NSYTV I   I   R  
Sbjct: 500 KGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPE 559

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWA 615
           EAYKY+EEM+ KGMKAP +DYNKFAAD S+AG+  +L ELAQK++F+GK +VSNV  +WA
Sbjct: 560 EAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKVKFAGKLDVSNVFYQWA 619

Query: 616 ETTKNRVYR 624
           +  K+RV R
Sbjct: 620 DRMKSRVKR 628


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/589 (46%), Positives = 371/589 (62%), Gaps = 65/589 (11%)

Query: 88  LYRSHCQVPCLLPHSSSLHSLQKVLLN--------KSTNVVA-------------SSLT- 125
           L+R+HC +  LLPH S    L   L          +++ VV               SLT 
Sbjct: 51  LHRTHCPLSPLLPHPSCTPHLPAPLSPPHLTSGSARTSAVVLLPRGALPLLPPRRRSLTG 110

Query: 126 NHNLATNILDSNCV-------NYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADP 178
           +  LAT    +  V        + + SS +D+        DG + E E  +     T++P
Sbjct: 111 SPQLATPACGAYDVLWGFAAGRFLSTSSASDE--------DGGSLEQEDAA-----TSNP 157

Query: 179 REIERVCKVIDELFSL--DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
             + RVC  I ++ +   D N+EA L      L   +V+ VL RF+HA RP++RFF WA 
Sbjct: 158 EGVGRVCAAIADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWAT 217

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
              GF H + TY  M+ ILG+ RQFE+MV++L+EMG+ G LSM+ FK+A+ +FAAA E K
Sbjct: 218 ASGGFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAAAGEIK 277

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            AV +FELM K  F  GV++ NCLL  L    L +EA+ +FDK+  +++P+L +YT L+ 
Sbjct: 278 NAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQYSPDLRSYTALML 337

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            WC  +NL+EAGRVWNEM++KG KPDVV HN M+EGLL+  ++ +A+K+FE+MKAKGP P
Sbjct: 338 AWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPP 397

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           NV +YT++I   CK+                    + A YTCL+ G+GN +RMD V  +L
Sbjct: 398 NVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVL 457

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +EM ++GCPPD  TYNALIKL+  +KMPD+A RIYK+M++ G  PTIHTYNM+MKSYF  
Sbjct: 458 EEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLG 517

Query: 517 G-NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
             NY MG  VW+EM RRG CPD NSYTV I G I   R  EAYKY+EEM+ KGMKAP +D
Sbjct: 518 DRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAPQID 577

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYR 624
            NKFAADLS+AG+  +L ELAQK++F+GKF+VSN   +WA+  K++V R
Sbjct: 578 CNKFAADLSKAGKLDMLYELAQKVKFAGKFDVSNAFYQWADRMKSQVKR 626


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/579 (46%), Positives = 360/579 (62%), Gaps = 51/579 (8%)

Query: 91  SHCQVPCLLPH-----------------SSSLHSLQKVLLNKSTNVVAS----SLTNHNL 129
           +HC +  LLPH                 S S      VLL +    +      SLT   L
Sbjct: 58  THCPLSPLLPHPSCTPRLPAPLPPPHLTSGSARIAGAVLLPRGALPLPPPRSRSLTGSPL 117

Query: 130 -ATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVI 188
            AT    S  V +   +        + GE DG  SE E       +T++P  + RVC  I
Sbjct: 118 HATPACGSYDVLWGFAAGRFLSTSAASGE-DGGASEQE-----EAATSNPEVVGRVCAAI 171

Query: 189 DELFSLDR--NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR 246
            ++ +     N+EA L      L   +V+ VL RF+HA RP++RFF WA    GF H + 
Sbjct: 172 ADVVAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTI 231

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           TY  M+ ILG+ RQFE MV++++EMG+ G LSM+ FK+A+ +FAAA E K AV +FELM 
Sbjct: 232 TYCKMLHILGKTRQFEMMVAIIQEMGKVGALSMDAFKVAIKSFAAAGEIKNAVGVFELMK 291

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           K  F  GV++ NCLL  L    L +EA+ +FDK+  +++P+L +YT L+  WC  +NL+E
Sbjct: 292 KNGFDDGVESFNCLLVALANEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVE 351

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           AGRVWNEM++KG KPDVV HN M+EGLL+  +R +A+K+FE+MKAKGP PNV +YT++I 
Sbjct: 352 AGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIR 411

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK+                    + A YTCL+ G+GN +RMD V  +L+EM ++GCPP
Sbjct: 412 DHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPP 471

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKV 525
           D  TYNALIKL+  +KMPD+A RIYK+M++ G +PTIHTYNM+MKSYF    NY MG  V
Sbjct: 472 DARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMGCAV 531

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           W+EM RRG CPD NSYTV I G I   R  EAYKY+EEM+ KGM AP +DYNKFAAD S+
Sbjct: 532 WEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSK 591

Query: 586 AGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYR 624
           AG+  +L ELA K++F+GK + SNV  +WA+  K+RV R
Sbjct: 592 AGKPDILYELALKVKFAGKCDASNVFFQWADRMKSRVKR 630


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/487 (50%), Positives = 334/487 (68%), Gaps = 31/487 (6%)

Query: 169 SVSYKSTADPREIERVCKVIDELFSLDR------NMEAVLDECGINLSHNLVVDVLERFR 222
           S ++  ++ P  + RVC  I ++ +         ++EA L      LS  LV+ VL+RF+
Sbjct: 135 SPAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSETLVLAVLDRFK 194

Query: 223 HARRPAFRFFCWAGDKP----GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
           HA RP+ RFF WA        GFAH + TY  M+ ILG+ARQF++MV++++EMG++G L 
Sbjct: 195 HAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALC 254

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           M+ FKIA+ +FAAA E K AV +FE+M  + F  GV++ NCLL  L +  L +EA  +FD
Sbjct: 255 MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFD 314

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +++ R+ P+L +YT L+  WC  +NL+EAGRVWNEM++ G KPDVV HN M+EGLL+  +
Sbjct: 315 RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 374

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTC 438
           R +A+K+FE+MKAKGP+PNV +YT++I   CK+                    + A YTC
Sbjct: 375 RPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTC 434

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           L+ G+GN +RMD V  LL+EM ++GCPPDG TYNALIKL+  + MPD+A RIYK+M++ G
Sbjct: 435 LLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKG 494

Query: 499 FKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            +PTIHTYNM+MKSYF  G NY MG  VW+EM R+G CPD NSYTV I G I   R  EA
Sbjct: 495 LEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA 554

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAET 617
            KY+EEM++KGMK P +DYNKFAAD S+AG+  +L ELAQK++F+GKF+ SNV  +WAE 
Sbjct: 555 CKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYELAQKVKFTGKFDASNVFHQWAER 614

Query: 618 TKNRVYR 624
            K RV R
Sbjct: 615 MKKRVKR 621


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/449 (49%), Positives = 305/449 (67%), Gaps = 31/449 (6%)

Query: 169 SVSYKSTADPREIERVCKVIDELFSLDR------NMEAVLDECGINLSHNLVVDVLERFR 222
           S ++  ++ P  + RVC  I ++ +         ++EA L      LS  LV+ VL+RF+
Sbjct: 135 SPAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSETLVLAVLDRFK 194

Query: 223 HARRPAFRFFCWAGDKP----GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
           HA RP+ RFF WA        GFAH + TY  M+ ILG+ARQF++MV++++EMG++G L 
Sbjct: 195 HAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALC 254

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           M+ FKIA+ +FAAA E K AV +FE+M  + F  GV++ NCLL  L +  L +EA  +FD
Sbjct: 255 MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFD 314

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +++ R+ P+L +YT L+  WC  +NL+EAGRVWNEM++ G KPDVV HN M+EGLL+  +
Sbjct: 315 RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 374

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTC 438
           R +A+K+FE+MKAKGP+PNV +YT++I   CK+                    + A YTC
Sbjct: 375 RPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTC 434

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           L+ G+GN +RMD V  LL+EM ++GCPPDG TYNALIKL+  + MPD+A RIYK+M++ G
Sbjct: 435 LLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKG 494

Query: 499 FKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            +PTIHTYNM+MKSYF  G NY MG  VW+EM R+G CPD NSYTV I G I   R  EA
Sbjct: 495 LEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA 554

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            KY+EEM++KGMK P +DYNKFAAD S+ 
Sbjct: 555 CKYIEEMIQKGMKTPQIDYNKFAADFSKG 583



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL---IKLMKIQKMPDEAVRIY 491
            Y  ++   G  R+   +  L++EM + G     L  +A    IK          AV ++
Sbjct: 223 TYCKMVHILGKARQFQSMVALIQEMGKEG----ALCMDAFKIAIKSFAAAGEIKNAVGVF 278

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           + M   GF   + ++N ++ +  Q G      +V+D M R    PD  SYT L+    + 
Sbjct: 279 EMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM-RDRYAPDLRSYTALMLAWCNA 337

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               EA +   EMLE G+K  V+ +N     L R  R     ++ + M+  G
Sbjct: 338 RNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKG 389


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/367 (54%), Positives = 262/367 (71%), Gaps = 21/367 (5%)

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           M+ FKIA+ +FAAA E K AV +FE+M  + F  GV++ NCLL  L +  L +EA  +FD
Sbjct: 1   MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFD 60

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +++ R+ P+L +YT L+  WC  +NL+EAGRVWNEM++ G KPDVV HN M+EGLL+  +
Sbjct: 61  RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 120

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTC 438
           R +A+K+FE+MKAKGP+PNV +YT++I   CK+                    + A YTC
Sbjct: 121 RPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTC 180

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           L+ G+GN +RMD V  LL+EM ++GCPPDG TYNALIKL+  + MPD+A RIYK+M++ G
Sbjct: 181 LLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKG 240

Query: 499 FKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            +PTIHTYNM+MKSYF  G NY MG  VW+EM R+G CPD NSYTV I G I   R  EA
Sbjct: 241 LEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA 300

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAET 617
            KY+EEM++KGMK P +DYNKFAAD S+AG+  +L ELAQK++F+GKF+ SNV  +WAE 
Sbjct: 301 CKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYELAQKVKFTGKFDASNVFHQWAER 360

Query: 618 TKNRVYR 624
            K RV R
Sbjct: 361 MKKRVKR 367



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 61/224 (27%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           TY  ++   G A++ + + ++LEEM +KG                               
Sbjct: 177 TYTCLLVGYGNAKRMDRVTALLEEMTQKGC------------------------------ 206

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL-----LGGWCR 360
                    T N L++ L    +P +A  ++ K+ K    P + TY ++     LGG   
Sbjct: 207 ----PPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGG--- 259

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG-PSPNVR 419
            +N M    VW EM  KG  PDV ++ + + G ++ G+  +A K  E M  KG  +P + 
Sbjct: 260 -RNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQID 318

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
                           Y      F    + DI+Y+L ++++  G
Sbjct: 319 ----------------YNKFAADFSKAGKPDILYELAQKVKFTG 346


>gi|7340725|emb|CAB82968.1| putative protein [Arabidopsis thaliana]
          Length = 308

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/299 (63%), Positives = 233/299 (77%), Gaps = 20/299 (6%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           RFTPN+ TYTVLL GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+  K+SDA
Sbjct: 2   RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDA 61

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITG 442
           IKLF VMK+KGP PNVRSYTIMI  FCKQ                    +AAVYTCLITG
Sbjct: 62  IKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITG 121

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           FG ++++D VY+LLKEM+E+G PPDG TYNALIKLM  QKMP+   RIY +M+++  +P+
Sbjct: 122 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 181

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           IHT+NMIMKSYF   NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLE
Sbjct: 182 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 241

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           EML+KGMK P++DYNKFAAD  R G+  + +ELAQ+ +FSGKF  + + ARWA+ T+ R
Sbjct: 242 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 300



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++HN++++ L R    +  A + F     K G   N R+Y  M+    +    ET +   
Sbjct: 43  VAHNVMLEGLLR-SMKKSDAIKLFHVMKSK-GPCPNVRSYTIMIRDFCKQSSMETAIEYF 100

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           ++M + GL      +   +  F   K+      + + M +        T N L++ +   
Sbjct: 101 DDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQ 160

Query: 328 KLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGR-VWNEMIDKGFKPDVVA 385
           K+P+    +++K+ ++   P++ T+ +++  +   +N  E GR VW+EMI KG  PD  +
Sbjct: 161 KMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNY-EMGRAVWDEMIKKGICPDDNS 219

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           + +++ GL+  GK  +A +  E M  KG
Sbjct: 220 YTVLIRGLISEGKSREACRYLEEMLDKG 247


>gi|116791998|gb|ABK26193.1| unknown [Picea sitchensis]
          Length = 262

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 130/254 (51%), Positives = 172/254 (67%), Gaps = 20/254 (7%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           ML GL K  K+ +A+KLF +MK  GP P+ +SYTI+I    K                  
Sbjct: 1   MLGGLFKGRKKDEALKLFGLMKINGPYPDSKSYTIVIRALSKLQKMEEASKFFAEMQEHG 60

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              +AAVYTC+ITG+GN +++D  Y LL+EM+E+G P D  TYNALIK+M +   PDEA 
Sbjct: 61  SPLDAAVYTCMITGYGNTKKLDKAYVLLQEMKEKGIPHDCRTYNALIKVMMVLHKPDEAT 120

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +++++M + GF+PTIHTYNM+MK YF+  N EMG  +WD+M R GCCPD NSYTV IGGL
Sbjct: 121 KLFEKMSQCGFQPTIHTYNMLMKLYFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGL 180

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
           I + RS EA  Y+E M++KGMKAP  DYNKF AD SRAGR  + +ELA KM+ +GK ++S
Sbjct: 181 IREGRSEEACAYIESMIDKGMKAPRFDYNKFLADFSRAGRPDIFEELAAKMKHAGKLDIS 240

Query: 609 NVLARWAETTKNRV 622
           +V  R ++  K RV
Sbjct: 241 DVFLRRSQKMKTRV 254



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 8/205 (3%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+ +V+  L + +     A +FF    +  G   ++  Y  M++  G  ++ +    +L+
Sbjct: 32  SYTIVIRALSKLQKMEE-ASKFFAEMQEH-GSPLDAAVYTCMITGYGNTKKLDKAYVLLQ 89

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EM EKG+     T+   +       +  +A  +FE M++  F+  + T N L++   R++
Sbjct: 90  EMKEKGIPHDCRTYNALIKVMMVLHKPDEATKLFEKMSQCGFQPTIHTYNMLMKLYFRAR 149

Query: 329 LPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            P+    ++D++ ++   P++ +YTV +GG  R     EA      MIDKG K     +N
Sbjct: 150 NPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACAYIESMIDKGMKAPRFDYN 209

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAK 412
             L    + G R D   +FE + AK
Sbjct: 210 KFLADFSRAG-RPD---IFEELAAK 230



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 106/243 (43%), Gaps = 16/243 (6%)

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTT 350
            +++ +A+ +F LM          +   ++  L + +  +EA   F +++   +P +   
Sbjct: 8   GRKKDEALKLFGLMKINGPYPDSKSYTIVIRALSKLQKMEEASKFFAEMQEHGSPLDAAV 67

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           YT ++ G+   K L +A  +  EM +KG   D   +N +++ ++ + K  +A KLFE M 
Sbjct: 68  YTCMITGYGNTKKLDKAYVLLQEMKEKGIPHDCRTYNALIKVMMVLHKPDEATKLFEKMS 127

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P + +Y +++  + +                R  ++ + +  +M   GC PD  +
Sbjct: 128 QCGFQPTIHTYNMLMKLYFRA---------------RNPEMGFAIWDQMARNGCCPDVNS 172

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y   I  +  +   +EA    + M+  G K     YN  +  + + G  ++  ++  +M 
Sbjct: 173 YTVFIGGLIREGRSEEACAYIESMIDKGMKAPRFDYNKFLADFSRAGRPDIFEELAAKMK 232

Query: 531 RRG 533
             G
Sbjct: 233 HAG 235


>gi|225423476|ref|XP_002274259.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Vitis vinifera]
          Length = 525

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 258/487 (52%), Gaps = 58/487 (11%)

Query: 174 STADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           S  +P  + RVC V+  +  S +  ++  L  C  +L+H   + V  +F  + RP ++FF
Sbjct: 34  SIVNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFF 93

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
            +   +P F HNS T+N M+ ++GR+R  +    +L+EMG + L + +TF IA+   A+ 
Sbjct: 94  EFTETQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASI 153

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
           +E KK V  F LMN +++   ++T+N ++E L RSKL  EA+ +  KLK    P+  TY 
Sbjct: 154 REMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYG 213

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G+C V +L+EA  VW+ M+D+GF+P + A   M+E L  I +  +A+KLF+ ++  
Sbjct: 214 YLIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTT 273

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                         +F +   + Y+ +I     R ++   Y + +EM +RG  PD  T +
Sbjct: 274 --------------RFDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMS 319

Query: 473 ALI-------------KLMKIQKMPD------------------EAVRIYKEMVRSGFKP 501
           +LI             K+ +  + PD                  EA ++++EM+R G +P
Sbjct: 320 SLIYGLLAKGRVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEP 379

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           T+HTY M+++ +       +G+K      R+G  P  N  ++ +GGLI   +S +A KY+
Sbjct: 380 TMHTYIMLLQGH-------LGKKG-----RKGPHPLVNFDSIFVGGLIKVGKSLDASKYV 427

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           E M++ GM+ P  DYN+F    S     ++ +E+ +K+R  G  +++++  R+ E    R
Sbjct: 428 ERMMDGGMEVPRFDYNRFLHCYSNEEGVFMFEEVGKKLREVGLVDLADIFLRYGEKMATR 487

Query: 622 VYRKDRI 628
             R++R+
Sbjct: 488 DRRRNRV 494


>gi|297738085|emb|CBI27286.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 258/487 (52%), Gaps = 58/487 (11%)

Query: 174 STADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           S  +P  + RVC V+  +  S +  ++  L  C  +L+H   + V  +F  + RP ++FF
Sbjct: 32  SIVNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFF 91

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
            +   +P F HNS T+N M+ ++GR+R  +    +L+EMG + L + +TF IA+   A+ 
Sbjct: 92  EFTETQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASI 151

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
           +E KK V  F LMN +++   ++T+N ++E L RSKL  EA+ +  KLK    P+  TY 
Sbjct: 152 REMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYG 211

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G+C V +L+EA  VW+ M+D+GF+P + A   M+E L  I +  +A+KLF+ ++  
Sbjct: 212 YLIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTT 271

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                         +F +   + Y+ +I     R ++   Y + +EM +RG  PD  T +
Sbjct: 272 --------------RFDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMS 317

Query: 473 ALI-------------KLMKIQKMPD------------------EAVRIYKEMVRSGFKP 501
           +LI             K+ +  + PD                  EA ++++EM+R G +P
Sbjct: 318 SLIYGLLAKGRVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEP 377

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           T+HTY M+++ +       +G+K      R+G  P  N  ++ +GGLI   +S +A KY+
Sbjct: 378 TMHTYIMLLQGH-------LGKKG-----RKGPHPLVNFDSIFVGGLIKVGKSLDASKYV 425

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           E M++ GM+ P  DYN+F    S     ++ +E+ +K+R  G  +++++  R+ E    R
Sbjct: 426 ERMMDGGMEVPRFDYNRFLHCYSNEEGVFMFEEVGKKLREVGLVDLADIFLRYGEKMATR 485

Query: 622 VYRKDRI 628
             R++R+
Sbjct: 486 DRRRNRV 492


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 154/532 (28%), Positives = 275/532 (51%), Gaps = 40/532 (7%)

Query: 98  LLPHSSSLH-------SLQKVLLNKSTNVVASSLTNHNLATNILDSNCVNYRNVSSVTDD 150
           L P +SS         S  K +    T++  SS  N +    I + N  ++R+     + 
Sbjct: 13  LFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNYTSHRSTHHRIEH 72

Query: 151 NQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLS 210
           ++      D   S+  I     +S    ++ E+ CK+I +  + +  +E++LD   + LS
Sbjct: 73  SKQ-----DLKASQKSIV----ESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELS 121

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
             L+V+VL++  +A   A  FF WA  + GF H + +YN ++  LG+ +QF  + +++ +
Sbjct: 122 PALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSD 181

Query: 271 MGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
           M  KG+LS ETF +    +A A++ K+AV  FE M K+ F+ GV   N LL+ L +S+  
Sbjct: 182 MKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNV 241

Query: 331 KEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           K+AQ +FDK+KH RF P++ +YT+LL GW + +NL++   V+ EM D+GF+PDVV   I+
Sbjct: 242 KKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGIL 301

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKFCKQ------ 431
           +    K  K  +AI+LF  M+AK   P+   +  +I             +F +Q      
Sbjct: 302 INAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGF 361

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
              A  Y  ++  +    +M   Y ++ EM + G  P+  TY+ ++  +   +   EA  
Sbjct: 362 APEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYS 421

Query: 490 IYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +++ M R  G +PT+ TY+++++ +      +M  ++WDEM  +G  P  + ++ LI  L
Sbjct: 422 VFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSL 481

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             + +  +A  Y +EML+ G++ P   ++     L   GR      +A+K++
Sbjct: 482 CHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIK 533


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 154/531 (29%), Positives = 274/531 (51%), Gaps = 40/531 (7%)

Query: 98  LLPHSSSLH-------SLQKVLLNKSTNVVASSLTNHNLATNILDSNCVNYRNVSSVTDD 150
           L P +SS         S  K +    T++  SS  N +    I + N  ++R+     + 
Sbjct: 13  LFPRTSSFQYASARSVSCSKTITKNQTSICISSHCNEHSTLLIPNRNYTSHRSTHHRIEH 72

Query: 151 NQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLS 210
           ++      D   S+  I     +S    ++ E+ CK+I +  + +  +E++LD   + LS
Sbjct: 73  SKQ-----DLKASQKSIV----ESDEIAQDAEKFCKLISK--NPNSCIESLLDGAPMELS 121

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
             L+V+VL++  +A   A  FF WA  + GF H + +YN ++  LG+ +QF  + +++ +
Sbjct: 122 PALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSD 181

Query: 271 MGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
           M  KG+LS ETF +    +A A++ K+AV  FE M K+ F+ GV   N LL+ L +S+  
Sbjct: 182 MKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNV 241

Query: 331 KEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           K+AQ +FDK+KH RF P++ +YT+LL GW + +NL++   V+ EM D+GF+PDVV   I+
Sbjct: 242 KKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGIL 301

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKFCKQ------ 431
           +    K  K  +AI+LF  M+AK   P+   +  +I             +F +Q      
Sbjct: 302 INAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGF 361

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
              A  Y  ++  +    +M   Y ++ EM + G  P+  TY+ ++  +   +   EA  
Sbjct: 362 APEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYS 421

Query: 490 IYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +++ M R  G +PT+ TY+++++ +      +M  ++WDEM  +G  P  + ++ LI  L
Sbjct: 422 VFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSL 481

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + +  +A  Y +EML+ G++ P   ++     L   GR      +A+K+
Sbjct: 482 CHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKI 532


>gi|449453031|ref|XP_004144262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Cucumis sativus]
          Length = 505

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 258/491 (52%), Gaps = 38/491 (7%)

Query: 163 SESEITSVSYKSTADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           S+S   + +     D   + RVC V+  +  S D  +   L  C  NLSH   + V   F
Sbjct: 29  SDSSTAADNIPQPIDSTHLRRVCTVLYQQQNSPDLKLHTKLLACNFNLSHEFFLQVCNTF 88

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
             + RP +RFF +    P F H + ++N ++ ++G++R  + +  +++EMG + L++ +T
Sbjct: 89  PLSWRPVYRFFQFTETHPNFTHTAVSFNKLIDVVGKSRNIDLLWGLIQEMGRRRLVNDKT 148

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
           F +A+   A A+E KK V  F LMN Y F   + T+N ++E L   KL  EA+ L  KL 
Sbjct: 149 FVVALRTLATARELKKCVEFFHLMNGYGFCYSLVTLNRVVEKLCGCKLVDEAKFLVMKLN 208

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
                +  TY +L+ G+C V +L+EA ++WN M+D+GF+P++ A   M+  L K  K  +
Sbjct: 209 EWIKADGVTYKLLIKGFCNVGDLIEASKMWNLMVDEGFEPEMEAVEEMMNVLFKTNKLDE 268

Query: 402 AIKLFEVMKAKGPSPNVRS-YTIMIWKFCKQ--------------------NAAVYTCLI 440
           A+KLF+ +++   +  + S Y+++I   C +                    + +V++ LI
Sbjct: 269 ALKLFQALRSDRMNDLIPSTYSLVIRWLCNKGKVGQAFIVFDEMHKRGLEVDNSVHSSLI 328

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   R R    Y++++ +E     PD   Y+A IK +   K  +EA ++++EM+  G +
Sbjct: 329 YGLLARGRRREAYNIMRRIEN----PDLDVYHAFIKGLLKLKRANEATQVFREMIERGCE 384

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P +HTY M+++ +       +G++      R+G  P  N  ++ +GGL+   +S EA KY
Sbjct: 385 PIMHTYIMLLQGH-------LGKRG-----RKGSDPLVNFDSIFVGGLVKNGKSLEATKY 432

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKN 620
           +E ++++G++ P  DYNKF    S      +  E+  K+R  G  +++++  R+ E    
Sbjct: 433 VERLMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNKLREVGLVDLADIFQRYGEKMTT 492

Query: 621 RVYRKDRIETD 631
           R  R++R  TD
Sbjct: 493 RDRRRNRAVTD 503


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 235/438 (53%), Gaps = 23/438 (5%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ERVCKV+    +L   ++  L++ G+ +S +LV +VL+RF +A  PAFRFF WA  + G+
Sbjct: 17  ERVCKVMMTCPTL--GLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGY 74

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI 301
           +H+ R Y+ M+  L + RQ++ +  ++  M +KG+L++ETF I M  +A A +  +AV  
Sbjct: 75  SHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEAVYT 134

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           F +M+KY     +   N LL  L +S   ++AQ +FD +K +F P+  +Y++LL GW + 
Sbjct: 135 FNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKA 194

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            NL  A  V+ EM++ G  PDVV + IM++ L K G+  +A+++ + M      P    Y
Sbjct: 195 PNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIY 254

Query: 422 TIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           ++++  +                     K +   Y  LI  F    +   V+ +LKEME 
Sbjct: 255 SVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMES 314

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P+  T N +I  M  Q   D A R++  M++   +P   TY M++K + +    EM
Sbjct: 315 NGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLC-EPDADTYTMMIKMFCEKNELEM 373

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             K+W  M  +   P  ++++ LI GL  +D + +A   +EEM+EKG++   + + +   
Sbjct: 374 ALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQ 433

Query: 582 DLSRAGRSYVLDELAQKM 599
            L + GR  VL  L +KM
Sbjct: 434 LLIKEGREDVLKFLHEKM 451



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 31/257 (12%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           W E   +G+   + A+++M+E L KI +      L   M+ KG   NV ++ IM+ K+ +
Sbjct: 67  WAEK-QRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKG-MLNVETFCIMMRKYAR 124

Query: 431 QN---AAVYTCLITGFGNRRRMDIVYDL--LKEMEERGCPPDGL-TYNALIKLMKIQKMP 484
            N    AVYT     F    + D+V +L     +    C  + +     +   MK Q +P
Sbjct: 125 ANKVDEAVYT-----FNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVP 179

Query: 485 DE------------------AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           DE                  A  +++EMV +G  P + TY +++    + G  +   +V 
Sbjct: 180 DEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVV 239

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            EM    C P    Y+VL+     + R  +A     EM +KG+KA V+ YN       + 
Sbjct: 240 KEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKV 299

Query: 587 GRSYVLDELAQKMRFSG 603
            +   +  + ++M  +G
Sbjct: 300 NKFKNVHRVLKEMESNG 316


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 267/527 (50%), Gaps = 53/527 (10%)

Query: 96  PCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSD 155
           PCL P + + H L  +  +        +   H L+                  D      
Sbjct: 41  PCLAPLAHARHVLGGMRSSLFCTAAGPAAATHELSV-----------------DQQFTVV 83

Query: 156 GECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVV 215
              DG+   S+++ V+          ERVC+V+      +  + + LD  G+N+S  LV 
Sbjct: 84  PGTDGDGPGSDVSEVA----------ERVCRVVSS--QPEPRIASALDALGVNMSPELVA 131

Query: 216 DVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG 275
           +VL    +A   A  FF WA  + GF + + ++++++  LG+ +QF  + S++E M  +G
Sbjct: 132 EVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRG 191

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
           LLS +TF++ +  +A A++ K+AV  FE M+ +  KA +   N L++ L +SK  K+A  
Sbjct: 192 LLSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHA 251

Query: 336 LFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           +F ++K   RF P+L TYTVL+ GW   K+L+    V+ EM+D G KPDVVA+  ++   
Sbjct: 252 IFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSF 311

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKFCKQNAA------V 435
            K GK  +AIK+F  M+A G  P+   Y ++I             K+ + + A      V
Sbjct: 312 CKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEV 371

Query: 436 YTC--LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYK 492
            TC  ++  +    +    + ++ EM + G  P+  TY+ +++ L+K QK+ +EA  +++
Sbjct: 372 PTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKI-EEAYNVFQ 430

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            M   G +P ++TY M++  +      +M  KVW +M  +G  P  + ++ LI GL  ++
Sbjct: 431 RMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFEN 490

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           R  EA  Y +EML+KG++ P   ++     L   GR  +  ++A K+
Sbjct: 491 RLEEACVYFQEMLDKGIRPPGQLFSNLKEALIEGGRISLAQDMALKL 537



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 150/355 (42%), Gaps = 70/355 (19%)

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           S +  LG     E +  +L  +   G+L++  F+ A        ER++            
Sbjct: 116 SALDALGVNMSPELVAEVLRNLSNAGILALAFFRWA--------ERQQG----------- 156

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           F+   ++ + L+E LG+ K  +    L + ++ R   +  T+ +++  + R + + EA  
Sbjct: 157 FRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVE 216

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKF 428
            + +M   G K D+  +N +++ L K  +   A  +F+ MK  G   P++++        
Sbjct: 217 TFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKT-------- 268

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                  YT L+ G+G+ +      DLL                    ++K         
Sbjct: 269 -------YTVLMEGWGHEK------DLL--------------------MLK--------- 286

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +Y+EM+ +G KP +  Y  ++ S+ ++G  +   KV+ EM   GC P  + Y +LI GL
Sbjct: 287 SVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGL 346

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            S++R  EA KY E     G    V   N       R+ +     ++  +MR +G
Sbjct: 347 GSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTG 401


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 240/447 (53%), Gaps = 25/447 (5%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           K TADP +  R+CK++     L+  ++  L E GI +S  +V +VL+RF +A   A++FF
Sbjct: 9   KETADPTK--RICKIMISCPKLE--LDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFF 64

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
            WAG +  + H+ R Y++M+  L + RQ++ M  ++ +M    +L++ETF I M  +A +
Sbjct: 65  EWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYARS 124

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
           ++ K+AV  F +M KY     +   N LL  L +SK   +AQ +F+ +K +F P+  TY+
Sbjct: 125 QKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKTYS 184

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +LL GW +  NL +A  ++ EM+D G  PD+V + IM++ L K G+  +A+ + + M + 
Sbjct: 185 ILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSS 244

Query: 413 GPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIV 452
              P    Y++++  +  +N                     AVY  LI  F    ++   
Sbjct: 245 VCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNA 304

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           Y +L EM+ +G  P+  T N ++  +      DEA R+++ M++    P   TY M++K 
Sbjct: 305 YRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVC-DPDADTYTMMIKM 363

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + +    EM  KVW  M  +   P  ++++VLI GL  +  + +A   LEEM+EKG++  
Sbjct: 364 FCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPS 423

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKM 599
            + + K    L + GR  VL+ L +KM
Sbjct: 424 SVTFGKLKQLLIKEGREDVLEFLQEKM 450


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 225/435 (51%), Gaps = 29/435 (6%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D N+E  LD+ G+ L+ +LV++VL R     + +FRFF WAG +  ++H    YN M+ I
Sbjct: 13  DHNLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDI 72

Query: 255 LG----RARQFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           L     +ARQF  +  ML+ M    K ++ +E     +  +      +      +   + 
Sbjct: 73  LTSTKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYTEKYLTRVQKFAKKKRIRV 132

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
           K +  ++  N LL+ L +  L ++A+ LF ++K++  P+  TY V+  GWCRV+N     
Sbjct: 133 KTQPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGM 192

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVRSYTIMI 425
           +V  EMI  G  PD   +   ++   + G  ++A +LFE M+ KG    SP  ++Y IMI
Sbjct: 193 KVLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMI 252

Query: 426 WKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                                  C  + + +  LI G  +  ++D  Y  L+EM  +G P
Sbjct: 253 GALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYP 312

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN  +K++   K  +EA+R+Y+ M+ +G  P++ T+NM++  +F+ G+ +   + 
Sbjct: 313 PDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFET 372

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           W EM +RGC  D ++Y V+I GL   ++  +A   +E+++ KGMK P   ++ F   LS 
Sbjct: 373 WYEMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSV 432

Query: 586 AGRSYVLDELAQKMR 600
            G    +  L++ MR
Sbjct: 433 IGNIRAIHRLSEHMR 447



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 19/229 (8%)

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +P++ A N++L+ L K     DA  LF+ +K K   P+  +Y +M + +C+         
Sbjct: 135 QPEINAFNLLLDALCKCCLAEDAEGLFKRVKNK-VKPDANTYNVMFFGWCRVRNPT---- 189

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                  R M +    L+EM + G  PD  TY   I       M +EA  +++ M   G 
Sbjct: 190 -------RGMKV----LEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGS 238

Query: 500 ---KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
               PT  TY +++ +  +    +   K+ ++MI  GC PD +++  LI G+ S  +  E
Sbjct: 239 TMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDE 298

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           AY++L+EM  KG    ++ YN F   L     S     L ++M  +G F
Sbjct: 299 AYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCF 347


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 227/422 (53%), Gaps = 21/422 (4%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  LD+ GI +S  +   VL RF +A   A+RFF WA  +  + H+ R Y+SM+  L +
Sbjct: 9   LETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAK 68

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            RQ++ +  ++  M  K +L++E F I M  +A A++ ++AV  F +M KY  K  V   
Sbjct: 69  IRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAF 128

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N LL  L +SK  ++AQ +FD +K +F P+  TY++L+ GW R  NL +A  ++ EMID 
Sbjct: 129 NGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDS 188

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN----- 432
           G  PD V ++IM++ L K G+  +A+++ + M      P+   Y++++  +  +N     
Sbjct: 189 GCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDA 248

Query: 433 ---------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                           A Y  LI+ F    +M  VY +LK+M+ +G  P+  T N +I  
Sbjct: 249 VSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINS 308

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +   DEA +I++ M++   +P + +Y MI+K +      +M  K+W  M ++   P 
Sbjct: 309 LIGRGETDEAFKIFRRMIKVC-EPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPS 367

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            ++++VLI GL     + +A   LEEM+EKG++     + +    L + GR  VL  L +
Sbjct: 368 MHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKDVLKFLQE 427

Query: 598 KM 599
           KM
Sbjct: 428 KM 429


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 240/450 (53%), Gaps = 23/450 (5%)

Query: 172 YKSTADPREIERVCKVIDELF--SLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
           Y S+   R++  V K I ++   S    +++ LD+ G+ +S  +V DVL RFR+A    +
Sbjct: 23  YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 82

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           RFF W+  +  + H+ R Y+ M+    + RQ++ M  ++  M +K +L++ETF I M  +
Sbjct: 83  RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 142

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A A++  +A+  F +M KY     +   N LL  L +SK  ++AQ +F+ ++ RFTP+  
Sbjct: 143 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 202

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY++LL GW +  NL +A  V+ EMID G  PD+V ++IM++ L K G+  +A+ +   M
Sbjct: 203 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 262

Query: 410 KAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM 449
                 P    Y++++  +  +N                     AV+  LI  F    RM
Sbjct: 263 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 322

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
             VY +LKEM+ +G  P+  + N +++ +  +   DEA  ++++M++   +P   TY M+
Sbjct: 323 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMV 381

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +K + +    E   KVW  M ++G  P  ++++VLI GL  +  + +A   LEEM+E G+
Sbjct: 382 IKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGI 441

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +   + + +    L +  R  VL  L +KM
Sbjct: 442 RPSGVTFGRLRQLLIKEEREDVLKFLNEKM 471



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 16/216 (7%)

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           I++    +  K  +AI  F VM+     PN+ ++  ++   CK              N R
Sbjct: 137 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSK------------NVR 184

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +   V++    M +R   PD  TY+ L++    +    +A  +++EM+ +G  P I TY+
Sbjct: 185 KAQEVFE---NMRDRF-TPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYS 240

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++    + G  +    +   M    C P    Y+VL+    +++R  EA     EM   
Sbjct: 241 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 300

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           GMKA V  +N       +A R   +  + ++M+  G
Sbjct: 301 GMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 336


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 240/450 (53%), Gaps = 23/450 (5%)

Query: 172 YKSTADPREIERVCKVIDELF--SLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
           Y S+   R++  V K I ++   S    +++ LD+ G+ +S  +V DVL RFR+A    +
Sbjct: 59  YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 118

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           RFF W+  +  + H+ R Y+ M+    + RQ++ M  ++  M +K +L++ETF I M  +
Sbjct: 119 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 178

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A A++  +A+  F +M KY     +   N LL  L +SK  ++AQ +F+ ++ RFTP+  
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY++LL GW +  NL +A  V+ EMID G  PD+V ++IM++ L K G+  +A+ +   M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298

Query: 410 KAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM 449
                 P    Y++++  +  +N                     AV+  LI  F    RM
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
             VY +LKEM+ +G  P+  + N +++ +  +   DEA  ++++M++   +P   TY M+
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMV 417

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +K + +    E   KVW  M ++G  P  ++++VLI GL  +  + +A   LEEM+E G+
Sbjct: 418 IKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGI 477

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +   + + +    L +  R  VL  L +KM
Sbjct: 478 RPSGVTFGRLRQLLIKEEREDVLKFLNEKM 507



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 16/216 (7%)

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           I++    +  K  +AI  F VM+     PN+ ++  ++   CK              N R
Sbjct: 173 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSK------------NVR 220

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +   V++    M +R   PD  TY+ L++    +    +A  +++EM+ +G  P I TY+
Sbjct: 221 KAQEVFE---NMRDRF-TPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYS 276

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++    + G  +    +   M    C P    Y+VL+    +++R  EA     EM   
Sbjct: 277 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERS 336

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           GMKA V  +N       +A R   +  + ++M+  G
Sbjct: 337 GMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 372


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 182 ERVCKVIDELFSLDRNMEAV---LDECGINLSHNLVVDVLERFRHARRPAFRFFCWA--G 236
           +R+CK+I       R   AV   LD  G+ ++  +   VLER  +A   A+RFF WA   
Sbjct: 40  KRLCKLIISC----RKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWARRQ 95

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
            + G AH  R+Y+++++ L + RQ++ M  ++  M ++G+ ++ETF I M  +A A++  
Sbjct: 96  KRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVETFSIIMRKYARAQKFD 155

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +AV  F +M +Y     +   N LL  L +SK  ++AQ +FDK+ +RF+P+  TY++LL 
Sbjct: 156 EAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLE 215

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           GW R  NL +   V+++M+  G +PD+V + IM++ L K G+  +A+ + + M ++G  P
Sbjct: 216 GWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQP 275

Query: 417 NVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLL 456
               Y++++  +                       +  VY  L+T F   ++ D  + ++
Sbjct: 276 TTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVM 335

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +ME  G  P+  T+N ++  +      DEA R+++ M++   KP   TY M++K + + 
Sbjct: 336 DDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKRC-KPDSDTYTMMIKMFCEN 394

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
              EM  KVW  M  +   P  ++++VLI GL  +    +A   LE+M+EKG++ P   +
Sbjct: 395 DKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTF 454

Query: 577 NKFAADLSRAGRSYVLDELAQKMR 600
            K    L + GR  VLD L +KM+
Sbjct: 455 GKLRQLLLKEGRKDVLDFLVEKMK 478


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 222/422 (52%), Gaps = 21/422 (4%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +   LD+ GI +S  +V DVL RF +A   A+RFF WA  +  + H+ R Y++M+  L +
Sbjct: 9   LHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAK 68

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            RQ++ M  ++  M  K +L++ETF I M  +A A++ ++AV  F +M KY     +   
Sbjct: 69  IRQYQIMWDLINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAF 128

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N L   L +SK  ++AQ +FD  K RF P+  TYT+LL GW +  NL +A  ++ EM+D 
Sbjct: 129 NGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDV 188

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------- 428
           G  PD+V + IM++ L K G+  +A+ + + M      P    Y+++I  +         
Sbjct: 189 GCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDA 248

Query: 429 -----------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                       K + A Y  LI  F    +   VY +L EM+ +G  P+  T N ++  
Sbjct: 249 VDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNN 308

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +   DEA R+++ M++   +P   TY M++K + +    EM  KVW  M ++   P 
Sbjct: 309 LIARGETDEAFRVFRRMIKVC-EPDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPS 367

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            ++++VLI GL  +     A   LE+M+EKG++   + + +    L + GR  VL+ L Q
Sbjct: 368 MHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGREDVLEFLQQ 427

Query: 598 KM 599
           K+
Sbjct: 428 KI 429



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           I++    +  K  +A+  F VM+     PN+ ++  +    CK              N R
Sbjct: 95  IIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSK------------NVR 142

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           +   ++D  K+       PD  TY  L++   K   +P +A  I++EMV  G  P I TY
Sbjct: 143 KAQEIFDSSKD----RFVPDSKTYTILLEGWGKTPNLP-KAREIFREMVDVGCSPDIVTY 197

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            +++    + G  +    +  EM    C P    Y+VLI     ++R  +A      M +
Sbjct: 198 GIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEK 257

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG--------KFEVSNVLARWAETT 618
            G+KA V  YN       +  +   +  +  +M + G           ++N++AR     
Sbjct: 258 NGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDE 317

Query: 619 KNRVYRK 625
             RV+R+
Sbjct: 318 AFRVFRR 324


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 246/459 (53%), Gaps = 23/459 (5%)

Query: 163 SESEITSVSYKSTADPREIERVCKVIDELF--SLDRNMEAVLDECGINLSHNLVVDVLER 220
           S+S +++  Y S+   R++  V K I ++   S    +++ LD+ G+ +S  +V DVL R
Sbjct: 15  SKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVLYR 74

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
           FR+A   A+RFF W+  +  + H+ R Y+ M+    + RQ++ M  ++  M +K +L++E
Sbjct: 75  FRNAGLLAYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMKKKMLNVE 134

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           TF I M  +A A++  +A+  F +M KY     +   N LL  L +SK  ++AQ +F+ +
Sbjct: 135 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENM 194

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           + RFTP+  TY++LL GW +  NL +A  V+ EM+D G  PD+V ++IM++ L K G+  
Sbjct: 195 RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVD 254

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLI 440
           +A+ +   M      P    Y++++  +                     K + AV+  LI
Sbjct: 255 EALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLI 314

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
             F    RM  VY +LKEM+ +G  P+  + N +++ +  +   DEA  ++++M++   +
Sbjct: 315 GAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIKVC-E 373

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TY M++K + +    E   KVW  M ++G  P  ++++VLI GL  +  + +A   
Sbjct: 374 PDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVL 433

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           LEEM+E G++     + +    L +  R  VL  L +KM
Sbjct: 434 LEEMIEMGIRPSGATFGRLRQLLLKEDREDVLKFLNEKM 472



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 16/216 (7%)

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           I++    +  K  +AI  F VM+     PN+ ++  ++   CK              N R
Sbjct: 138 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSK------------NVR 185

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +     ++ + M +R  P D  TY+ L++    +    +A  +++EMV +G  P I TY+
Sbjct: 186 K---AQEIFENMRDRFTP-DSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYS 241

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++    + G  +    +   M    C P    Y+VL+    ++ R  EA     EM   
Sbjct: 242 IMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERS 301

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           GMKA V  +N       +  R   +  + ++M+  G
Sbjct: 302 GMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKG 337


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 245/443 (55%), Gaps = 26/443 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E ERVC+V+  L   +  + A LD  G ++S  LV +VL+   +A   A  FF WA  + 
Sbjct: 116 EAERVCRVLSTL--PEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQQ 173

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF + + ++++++  LG+ +QF  + S++E M  +GLLS +TF++ +  +A A++ K+AV
Sbjct: 174 GFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAV 233

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGG 357
             FE M  +  KA +   N L++ L +SK  K+A  +F ++K   RF P+L TYTVL+ G
Sbjct: 234 ETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEG 293

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W   K+L+    V+ EM+D G +PDVVA+ +++    K GK  +AIK+F  M+  G  P+
Sbjct: 294 WGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPS 353

Query: 418 VRSYTIMI------------WKFCKQNAA------VYTC--LITGFGNRRRMDIVYDLLK 457
              Y ++I             K+ + + A      V TC  ++  +    +    + ++ 
Sbjct: 354 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVD 413

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           EM + G  P+  TY+ ++  L+K QK+ +EA  +++ M + G +P ++TY M++  +   
Sbjct: 414 EMRKSGIGPNSRTYDIILHHLIKSQKI-EEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSN 472

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
              ++  KVW++M  +G  P  + ++ LI GL  ++R  EA  Y +EML++G++ P   +
Sbjct: 473 ERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPPGQLF 532

Query: 577 NKFAADLSRAGRSYVLDELAQKM 599
           +     L   GR  +  E+A K+
Sbjct: 533 SNLKEALIEGGRISLAQEMALKL 555



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 70/355 (19%)

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           + +  LG +   + +  +L+ +   G+L++  F+ A        ER++            
Sbjct: 134 AALDALGASVSPQLVAEVLKNLSNAGILALAFFRWA--------ERQQG----------- 174

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           F    D+ + L+E LG+ K  +    L + ++ R   +  T+ +++  + R + + EA  
Sbjct: 175 FVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEAVE 234

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKF 428
            + +M   G K D+  +N +++ L K  +   A  +F+ MK  G   P++++Y       
Sbjct: 235 TFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTY------- 287

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                   T L+ G+G+ +      DLL                 ++K            
Sbjct: 288 --------TVLMEGWGHEK------DLL-----------------MLK------------ 304

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +Y+EM+ +G +P +  Y M++ S+ ++G  +   KV+ EM   GC P  + Y +LI GL
Sbjct: 305 SVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGL 364

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            S++R  EA KY E     G    V   N       R+ +     ++  +MR SG
Sbjct: 365 GSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSG 419


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 223/441 (50%), Gaps = 45/441 (10%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LD+ G+ L+ +LV D+L R R   + AFRFF WA  +  ++H  R YN M+ IL 
Sbjct: 102 DMEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILS 161

Query: 257 RAR----QFETMVSMLEEM--GEKGLLSMET-FKIAMN-------AFAAAKERKKAVAIF 302
             R    QF  +  +L+ M   +K  + +E  F I  N             ++KK +   
Sbjct: 162 STRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIV-- 219

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
                 K +  ++  N LL+ L +  L ++A+ L  K+K +  P+  TY ++  GWCRV+
Sbjct: 220 ------KRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVR 273

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVR 419
           N     RV  EMI+ GF PD   +N  +    K G   +A +LFE M+ KG    SP  +
Sbjct: 274 NPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAK 333

Query: 420 SYTIMI------------WKF--------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y IMI            +KF        C  + + Y  +I G     ++   Y  L+EM
Sbjct: 334 TYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEM 393

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            ++G PPD +TYN  +K++   KM D+A+R    M+  G  P++ TYNM++  +F+  ++
Sbjct: 394 GKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDH 453

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               ++W EM R GC  D +SY ++I GL   ++ G+A   LEE++ KGMK P   ++ F
Sbjct: 454 NGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLPFRKFDSF 513

Query: 580 AADLSRAGRSYVLDELAQKMR 600
              LS  G    +  L++ MR
Sbjct: 514 LMQLSVNGNLKGIHRLSEHMR 534


>gi|356497975|ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g26500-like [Glycine max]
          Length = 494

 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 251/477 (52%), Gaps = 40/477 (8%)

Query: 174 STADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           S  +P  + RVC ++  +  S +  + + L      L+H   + V  +F ++ RP +RFF
Sbjct: 29  SPVNPDHLLRVCTILYQQQNSPEPRLTSKLASSEFQLTHEFFLQVCNKFPYSWRPVYRFF 88

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
            +    P F H+  ++N M+ ++G++R  +    +L +M  +  ++ +TF IA+     A
Sbjct: 89  LYTQSLPHFTHSPVSFNKMLDVVGKSRNIDLFWDLLNDMARRHFVNDKTFVIALRTLGGA 148

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
           +E KK V  F LMN    +  + T+N ++E + +S+L  EA+ +  KL+    P+  TY 
Sbjct: 149 RELKKCVEFFHLMNSNGCEYNLGTLNKVVEAMCKSRLVDEAKFVVFKLRECVRPDGVTYK 208

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G+C   +L+ A +VWN M D+GF+ DV A   M+E   K+ +  +A++LFE M+ K
Sbjct: 209 NLIIGYCDKGDLVGASKVWNLMEDEGFEADVDAVEKMMETFFKVNEYGEALRLFETMRFK 268

Query: 413 GPSP-NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
             +     +Y ++I   CK+                    N +    ++ G   RRR+  
Sbjct: 269 RMNELGASTYGLVIRWLCKKGMMARAHEVFEEMRERGVRVNDSTLGDVVYGLLTRRRVRE 328

Query: 452 VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            Y + + +E     PD   Y+  IK L+K+++   EA ++++EM+R G +PT+HTY M++
Sbjct: 329 AYRVFEGIE----VPDLCVYHGFIKGLLKLRR-AGEATQVFREMIRRGCEPTMHTYIMLL 383

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           + +       +GR+      R+G  P  N  T+ +GG++   +S EA KY+E +L +GM+
Sbjct: 384 QGH-------LGRRG-----RKGTDPLVNFDTIFVGGMVKAGKSKEATKYVERVLNRGME 431

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDR 627
            P  DYNKF    S     ++ +++ +K+R  G  +++++L R+ +    R  R+DR
Sbjct: 432 VPRFDYNKFLHYFSNEEGVHMFEDVGKKLREVGLVDLADILDRYGQKMATRDRRRDR 488


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 223/441 (50%), Gaps = 45/441 (10%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LD+ G+ L+ +LV D+L R R   + AFRFF WA  +  ++H  R YN M+ IL 
Sbjct: 102 DMEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILS 161

Query: 257 RAR----QFETMVSMLEEM--GEKGLLSMET-FKIAMN-------AFAAAKERKKAVAIF 302
             R    QF  +  +L+ M   +K  + +E  F I  N             ++KK +   
Sbjct: 162 STRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIV-- 219

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
                 K +  ++  N LL+ L +  L ++A+ L  K+K +  P+  TY ++  GWCRV+
Sbjct: 220 ------KRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVR 273

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVR 419
           N     RV  EMI+ GF PD   +N  +    K G   +A +LFE M+ KG    SP  +
Sbjct: 274 NPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAK 333

Query: 420 SYTIMI------------WKF--------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y IMI            +KF        C  + + Y  +I G     ++   Y  L+EM
Sbjct: 334 TYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEM 393

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            ++G PPD +TYN  +K++   KM D+A+R    M+  G  P++ TYNM++  +F+  ++
Sbjct: 394 GKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDH 453

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               ++W EM R GC  D +SY ++I GL   ++ G+A   LEE++ KGMK P   ++ F
Sbjct: 454 NGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLPFRKFDSF 513

Query: 580 AADLSRAGRSYVLDELAQKMR 600
              LS  G    +  L++ MR
Sbjct: 514 LMQLSVNGNLKGIHRLSEHMR 534


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 212/397 (53%), Gaps = 29/397 (7%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA---GDKPGFAHNSRTYNSMMSI 254
           +E  L +C ++L+ +LV+DVL+R R   RPA+ FF WA   G + G++     +N ++ I
Sbjct: 105 IEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHNEILDI 164

Query: 255 LGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           LGR R+F  M  + +EM + KGL++  TF + +N +AAA + ++AV IF       F+  
Sbjct: 165 LGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAVKIFNKRKGLGFELD 224

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           +     LL +L R K  + A+ LF   K+ F P++ +  V+L GWC + +L EA R WN+
Sbjct: 225 LIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWND 284

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI-------- 425
           +I    KPD   + I +  L K GK S A+KLF+ M  KG +P+V     +I        
Sbjct: 285 IITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKR 344

Query: 426 ------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                        + C+ + A Y  LI      +R + VY+LL +ME++GC P+  TY  
Sbjct: 345 IPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGY 404

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG-RKVWDEMIRR 532
              L+K  K P+E   I + M R+G +     YN+I+K Y   G YE+  R   DEM R 
Sbjct: 405 ---LLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWG-YELKLRSTLDEMERN 460

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           G  PD  +YT++I GL  + R  +A  Y ++M   GM
Sbjct: 461 GMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 497



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 23/250 (9%)

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           I+ G+ P    HN +L+ L ++ +  +  +LF+ M  +    N R++ +++ ++   +  
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKT 206

Query: 435 VYTCLITGFGNRRRMDIVYDLLK--------------EMEE-------RGCPPDGLTYNA 473
                I  F  R+ +    DL+               EM E          PPD  + N 
Sbjct: 207 EEAVKI--FNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNV 264

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           ++    +     EA R + +++ S  KP   TY + + S  + G      K++  M  +G
Sbjct: 265 ILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKG 324

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C PD      +I  L  + R  EA + L EM E+  +  V  YN     L +  R   + 
Sbjct: 325 CNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVY 384

Query: 594 ELAQKMRFSG 603
           EL   M   G
Sbjct: 385 ELLDDMEQKG 394


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 241/450 (53%), Gaps = 32/450 (7%)

Query: 175 TADPREIERVCKVIDELFSLDRNMEAV---LDECGINLSHNLVVDVLERFRHARRPAFRF 231
           TADP   +R+ K+I       R   AV   LD  G+ ++ ++   VLER  +A   A+RF
Sbjct: 32  TADP--AKRLFKLIISC----RKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRF 85

Query: 232 FCWA--GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           F WA    + G AH  R+Y+++++ L + RQ++ M  ++  M  +G +++ETF I M  +
Sbjct: 86  FEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVNVETFGIIMRKY 145

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A A++  +AV  F +M KY     +   N LL  L +SK  ++AQ +FDK+  RF+P+  
Sbjct: 146 ARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAK 205

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY++LL GW R  NL +   V++EM+D G +PD+V + IM++ L K G+  +A+++ + M
Sbjct: 206 TYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDM 265

Query: 410 KAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRM 449
            ++G  P    Y++++  +  +                    +  VY  L++ F   ++ 
Sbjct: 266 TSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKF 325

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           +  + +L +ME  G   +  T+N ++  +      DEA ++++ M++   +P   TY M+
Sbjct: 326 ENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCC-QPDCDTYTMM 384

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +K + +    EM  KVW  M  +   P  ++++VLI GL  +    +A   LE+M+EKG+
Sbjct: 385 IKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGI 444

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           + P   + K    L + GR  VLD L +KM
Sbjct: 445 RPPGSTFGKLRQLLLKEGRKDVLDFLVEKM 474



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 2/175 (1%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C      Y  ++      R+  +++D++  M   G   +  T+  +++     +  DEAV
Sbjct: 97  CAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAV-NVETFGIIMRKYARAQKVDEAV 155

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
             +  M + G  P +  +N ++ +  ++ N    ++++D+M  R   PD  +Y++L+ G 
Sbjct: 156 YTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSR-FSPDAKTYSILLEGW 214

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                  +  +   EML+ G +  ++ Y      L + GR      + Q M   G
Sbjct: 215 GRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRG 269


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 211/397 (53%), Gaps = 29/397 (7%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA---GDKPGFAHNSRTYNSMMSI 254
           +E  L +C ++L+ +LV+DVL+R R   RPA+ FF WA   G + G++     +N ++ I
Sbjct: 105 IEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXESGYSPGCGVHNEILDI 164

Query: 255 LGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           LGR R+F  M  + +EM + KGL +  TF + +N +AAA + ++AV IF       F+  
Sbjct: 165 LGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEAVKIFYKRKGLGFELD 224

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           +     LL +L R K  + A+ LF   K+ F P++ +  V+L GWC + +L EA R WN+
Sbjct: 225 LIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWND 284

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI-------- 425
           +I    KPD   + I +  L K GK S A+KLF+ M  KG +P+V     +I        
Sbjct: 285 IITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKR 344

Query: 426 ------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                        + C+ + A Y  LI      +R + VY+LL +ME++GC P+  TY  
Sbjct: 345 IPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGY 404

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG-RKVWDEMIRR 532
              L+K  K P+E   I + M R+G +     YN+I+K Y   G YE+  R   DEM R 
Sbjct: 405 ---LLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWG-YELKLRSTLDEMERN 460

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           G  PD  +YT++I GL  + R  +A  Y ++M   GM
Sbjct: 461 GMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 497



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 23/249 (9%)

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           + G+ P    HN +L+ L ++ +  +  +LF+ M  +    N R++ +++ ++   +   
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTE 207

Query: 436 YTCLITGFGNRRRMDIVYDLLK--------------EMEE-------RGCPPDGLTYNAL 474
               I  F  R+ +    DL+               EM E          PPD  + N +
Sbjct: 208 EAVKI--FYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIKSMNVI 265

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +    +     EA R + +++ S  KP   TY + + S  + G      K++  M  +GC
Sbjct: 266 LNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGC 325

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD      +I  L  + R  EA + L EM E+  +  V  YN     L +  R   + E
Sbjct: 326 NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYE 385

Query: 595 LAQKMRFSG 603
           L   M   G
Sbjct: 386 LLDDMEQKG 394


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 240/439 (54%), Gaps = 26/439 (5%)

Query: 184 VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAH 243
           VC+++      +  + + LD  G+ +S  LV +VL+   +A   A  FF WA  + GF++
Sbjct: 106 VCRIVST--QPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSY 163

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
            +  +++++  LG+ +QF+ + S++E M  +GLLS +TFK+ +  +A A++ K+AV  FE
Sbjct: 164 TAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFE 223

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRV 361
            M+ +  K  +   N L++ L +SK  K+AQ ++ ++K +  F P+L TYTVL+ GW   
Sbjct: 224 KMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHE 283

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K+L+    ++ EMID G +PDVVA+ +++    K GK  +AIK+F  M+A G  P+   Y
Sbjct: 284 KDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVY 343

Query: 422 TIMI------------WKFCKQ------NAAVYTC--LITGFGNRRRMDIVYDLLKEMEE 461
            ++I             K+ +Q         V TC  ++  +    + +  + ++ EM E
Sbjct: 344 CMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRE 403

Query: 462 RGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
               P+  TY+ ++  L+K QK  +EA  +++ M   G +P ++TY M++  +   G  +
Sbjct: 404 CKIGPNSRTYDVILHYLIKSQKF-EEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVD 462

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           M   VW +M  RG  P  + ++ LI GL  ++R  EA  Y +EML+KG++ P   ++   
Sbjct: 463 MALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLK 522

Query: 581 ADLSRAGRSYVLDELAQKM 599
             L   GR  +  E+A K+
Sbjct: 523 EALVEGGRISLAQEMASKL 541



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 70/352 (19%)

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           S +  LG A   E +  +L+ +   G+L++  F+ A        ER++            
Sbjct: 120 STLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWA--------ERQEG----------- 160

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           F    +  + L+E LG+ K  K    L + ++ R   +  T+ +++  + R + + EA  
Sbjct: 161 FSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVE 220

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKF 428
            + +M   G K ++  +N +++ L K  +   A  +++ MK KG   P++++YT+     
Sbjct: 221 TFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTV----- 275

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                     L+ G+G+ +      DLL                 ++K M          
Sbjct: 276 ----------LMEGWGHEK------DLL-----------------MVKTM---------- 292

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
             Y+EM+ +G +P +  Y M++ ++ ++G  +   KV+ EM   GC P  + Y +LI GL
Sbjct: 293 --YQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGL 350

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            S++R  EA KY E+  + G    V   N       RA +     ++  +MR
Sbjct: 351 GSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMR 402



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERK 296
           K GF     T N+++    RA +FE    M++EM E K   +  T+ + ++    +++ +
Sbjct: 368 KSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFE 427

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A  +F+ M     +  ++T   ++     +     A  ++ ++  R   P +  ++ L+
Sbjct: 428 EAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALI 487

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C    L EA   + EM+DKG +P     + + E L++ G+ S A ++   + A   +
Sbjct: 488 NGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRISLAQEMASKLDAIRKT 547

Query: 416 P 416
           P
Sbjct: 548 P 548


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 244/450 (54%), Gaps = 32/450 (7%)

Query: 177 DPREIERVCKVIDELFSLDR--NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
           DP   +R+CK+I    S  +   +E  LD   + ++ ++   VLER  +A   A+RFF W
Sbjct: 36  DP--AKRLCKLI---ISCQKASGLELELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEW 90

Query: 235 A--GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
           A    + G  H  R+Y+++++ L + RQ++ M  ++  M  +G++++ETF I M  +A A
Sbjct: 91  ARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGVVNVETFGIIMRKYARA 150

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
           ++  +AV  F +M KY     +   N LL  L +SK  ++AQ +FDK+  RF P+  TY+
Sbjct: 151 QKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNGRFNPDAKTYS 210

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +LL GW +  NL +   V++EM+D G +PD+V + IM++ L K G+  +A+ + + M ++
Sbjct: 211 ILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSR 270

Query: 413 GPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIV 452
           G  P    Y++++  +  +                    +  VY  L+T F   ++ +  
Sbjct: 271 GCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFENA 330

Query: 453 YDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           + ++ +ME  G  P+  T+N ++ KL+ + K  DEA R+++ M++   +P   TY M++K
Sbjct: 331 FRVMDDMEGHGIAPNSRTWNIILNKLISLGK-DDEAYRVFRRMIKRC-QPDSDTYTMMIK 388

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + +  N EM  KVW  M  +   P  ++++VLI GL  +    +A   LE+M+EKG++ 
Sbjct: 389 MFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRP 448

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           P   + K    L + GR  VL+ L  KM+ 
Sbjct: 449 PGSTFGKLRQLLLKEGRKDVLEFLVDKMKI 478


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 239/441 (54%), Gaps = 26/441 (5%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ERVC+V+      +  +  VLD  G+ +S  LV +VL+   +A   A  FF WA  + GF
Sbjct: 93  ERVCRVVSA--QPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQGF 150

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI 301
            +++  +++++  LG+ +QF  + S++E M  +  LS +TFKI +  +A A++ K+AV  
Sbjct: 151 RYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVET 210

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWC 359
           FE M+ +  K  +   N L++ L +SK  K+A  +F ++K   RF P+L TYTVL+ GW 
Sbjct: 211 FEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWG 270

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
             K+L+    V+ EM+D G KPDVVA+ +++    K GK  +AIK+F  M+  G  P+  
Sbjct: 271 HEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPH 330

Query: 420 SYTIMI---------------WKFCKQNA---AVYTC--LITGFGNRRRMDIVYDLLKEM 459
            Y ++I               ++  K++     V TC  +I  +         + ++ EM
Sbjct: 331 VYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEM 390

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
            + G  P+  TY+ ++  L+K +K+ +EA  +++ M R G +P ++TY M++  +     
Sbjct: 391 RKSGIGPNTRTYDIILNHLIKSEKI-EEAYNLFQRMERDGCEPELNTYTMMVGMFCSNER 449

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +M  KVW +M  +G  P  + ++ LI GL  ++R  EA  Y +EML+KG++ P   ++ 
Sbjct: 450 VDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSN 509

Query: 579 FAADLSRAGRSYVLDELAQKM 599
               L   GR  +  E+ Q++
Sbjct: 510 LKEALVEGGRITLAQEVTQRL 530



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 52/308 (16%)

Query: 298 AVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A+A F    + + F+   +  + L+E LG+ K  +    L + ++ R   +  T+ +++ 
Sbjct: 137 ALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVR 196

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-S 415
            + R + + EA   + +M   G K D+  +N +++ L K  +   A  +F+ MK KG   
Sbjct: 197 RYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFI 256

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++++               YT L+ G+G+ +      DLL                   
Sbjct: 257 PDLKT---------------YTVLMEGWGHEK------DLL------------------- 276

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            ++K          +Y+EM+ +G KP +  Y M++ ++ ++G  +   KV+ EM   GC 
Sbjct: 277 -MLKA---------VYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCM 326

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P  + Y +LI GL S +R  EA KY +   E G    V   N       RA   +   ++
Sbjct: 327 PSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKM 386

Query: 596 AQKMRFSG 603
             +MR SG
Sbjct: 387 VDEMRKSG 394


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 222/416 (53%), Gaps = 23/416 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+V +++ +  S    +E  L E G+ +   L   VL R   A    +RFF WA  +P
Sbjct: 57  DVEKVYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQP 116

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G+ H+   Y +M+ ILG+ RQF  + +++EEM  +    +S   F + M  FA+A+  KK
Sbjct: 117 GYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKK 176

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ + + M KY  +       CLL+ L ++   KEA  LF+ ++ RFTP L  +T LL G
Sbjct: 177 AIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYG 236

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR   LMEA  V  ++ + GF+PD+V +N +L G    GK  DA  L + M+ K   PN
Sbjct: 237 WCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPN 296

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V S+T +I   C +                    +A  YT LI+GF    ++   Y+LL 
Sbjct: 297 VMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLD 356

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M ++G  P+ +TY  ++   + ++  +E + + +EM + G  P ++ YN++++   + G
Sbjct: 357 NMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLG 416

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAP 572
             + G +VW+EM   G  P  +++ ++I G +SQ    EA ++ +EM+ +G + AP
Sbjct: 417 EIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAP 472



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 34/188 (18%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL----------------M 478
           V+  L+  F + R +    ++L EM + GC PD   +  L+                  M
Sbjct: 160 VFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM 219

Query: 479 KIQKMPD------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           +I+  P                   EA  +  ++  +GF+P I  YN ++  Y   G   
Sbjct: 220 RIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMV 279

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +  EM R+ C P+  S+T LI  L ++ +  EA +   EM   G  A  + Y    
Sbjct: 280 DAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLI 339

Query: 581 ADLSRAGR 588
           +   + G+
Sbjct: 340 SGFCKWGK 347



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK---IQKMPDEAVRIY 491
           VY  +I   G  R+   V+ L++EM      P  ++    + LM+     +M  +A+ + 
Sbjct: 124 VYKAMIKILGKMRQFGAVWALIEEMRREN--PQFVSPYVFVVLMRRFASARMVKKAIEVL 181

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM + G +P  H +  ++ +  + G+ +    ++++M R    P    +T L+ G   +
Sbjct: 182 DEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM-RIRFTPTLKHFTSLLYGWCRE 240

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +  EA   L ++ E G +  ++ YN      + AG+     +L ++MR
Sbjct: 241 GKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMR 289


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 238/441 (53%), Gaps = 26/441 (5%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ERVC+V+      +  +  VLD  G+ +S  LV +VL+   +A   A  FF WA  + GF
Sbjct: 93  ERVCRVVSA--QPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQGF 150

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI 301
            +++  +++++  LG+ +QF  + S++E M  +  LS +TFKI +  +A A++ K+AV  
Sbjct: 151 RYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVET 210

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWC 359
           FE M+ +  K  +   N L++ L +SK  K+A  +F ++K   RF P+L TYTVL+ GW 
Sbjct: 211 FEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWG 270

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
             K+L+    V+ EM+D G KPDVVA+ +++    K GK  +AIK+F  M+  G  P+  
Sbjct: 271 HEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPH 330

Query: 420 SYTIMI---------------WKFCKQNA---AVYTC--LITGFGNRRRMDIVYDLLKEM 459
            Y ++I               ++  K++     V TC  +I  +         + ++ EM
Sbjct: 331 VYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEM 390

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
            + G  P+  TY+ ++  L+K +K+ +EA  +++ M R G +P ++TY M++  +     
Sbjct: 391 RKSGIGPNTRTYDIILNHLIKSEKI-EEAYNLFQRMERDGCEPELNTYTMMVGMFCSNER 449

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +M  KVW +M  +G  P  + ++ LI GL   +R  EA  Y +EML+KG++ P   ++ 
Sbjct: 450 VDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSN 509

Query: 579 FAADLSRAGRSYVLDELAQKM 599
               L   GR  +  E+ Q++
Sbjct: 510 LKEALVEGGRITLAQEVTQRL 530



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 52/308 (16%)

Query: 298 AVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A+A F    + + F+   +  + L+E LG+ K  +    L + ++ R   +  T+ +++ 
Sbjct: 137 ALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVR 196

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-S 415
            + R + + EA   + +M   G K D+  +N +++ L K  +   A  +F+ MK KG   
Sbjct: 197 RYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFI 256

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++++               YT L+ G+G+ +      DLL                   
Sbjct: 257 PDLKT---------------YTVLMEGWGHEK------DLL------------------- 276

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            ++K          +Y+EM+ +G KP +  Y M++ ++ ++G  +   KV+ EM   GC 
Sbjct: 277 -MLKA---------VYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCM 326

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P  + Y +LI GL S +R  EA KY +   E G    V   N       RA   +   ++
Sbjct: 327 PSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKM 386

Query: 596 AQKMRFSG 603
             +MR SG
Sbjct: 387 VDEMRKSG 394


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 217/412 (52%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+V +++ +  +    +E  L E G+ +   L   VL R   A    +RFF WA  +P
Sbjct: 76  DVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQP 135

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G+ H+   Y +M+  LG+ RQF  + +++EEM ++   +L+ E F + M  FA+ +  KK
Sbjct: 136 GYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKK 195

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M KY  +       CLL+ L ++   KEA  LF+ ++ RF PNL  +T LL G
Sbjct: 196 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYG 255

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR   +MEA  V  ++ + GF+PD+V +N +L G  + GK  DA  L   MK     PN
Sbjct: 256 WCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPN 315

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             S+TI+I  FCK                     +   YT LI+GF      D  Y++L 
Sbjct: 316 AASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILD 375

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M ++G  P  L+Y  ++   + ++  +E + + +EM + G  P ++ YN +++   + G
Sbjct: 376 DMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLG 435

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + +   ++W EM   G  P  ++Y +++ G +SQ    EA  Y +EM+E+G+
Sbjct: 436 DLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGL 487


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 236/442 (53%), Gaps = 24/442 (5%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA-GDKPG 240
           +R+CK+I         +E  LD  G+ ++  +   VL+   +A   A+RFF WA   K G
Sbjct: 42  KRLCKLIISCRKAS-ALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRG 100

Query: 241 F-AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
             AH  R+Y+++++ L + RQ++ M  ++  M ++G+ ++ETF I M  +A A++  +AV
Sbjct: 101 VCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARAQKLDEAV 160

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
             F +M KY     +   N LL  L +SK  ++AQ +FDK+ +RF+P+  TY++LL GW 
Sbjct: 161 YTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGWG 220

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R  +L +   V+++M+  G +PD+V + IM++ L K G+  +A+ + + M ++G  P   
Sbjct: 221 RAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTF 280

Query: 420 SYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            Y+I++  +                       +  VY  LIT F   ++ +  + ++ +M
Sbjct: 281 IYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDM 340

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +  G  P+  T+N ++  +      DEA R+++ M++   KP   TY M++K + +    
Sbjct: 341 QGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKRC-KPDSDTYTMMIKMFCENDKI 399

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           EM  KVW  M  +   P  ++++VLI GL  +    +A   LE+M+EKG++ P   + K 
Sbjct: 400 EMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKL 459

Query: 580 AADLSRAGRSYVLDELAQKMRF 601
              L + GR  VLD L +KM+ 
Sbjct: 460 RQLLLKEGRKDVLDFLVEKMKI 481



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K G   +   YN++++   + ++FE    ++++M   G+  +  T+ I +N   +  + 
Sbjct: 306 EKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKD 365

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
            +A  +F  M K + K   DT   +++    +   + A  ++  ++  +F P++ T++VL
Sbjct: 366 DEAYRVFRSMIK-RCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVL 424

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C    + +A  +  +MI+KG +P       + + LLK G++     L E MK    
Sbjct: 425 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMKILAQ 484

Query: 415 SP 416
            P
Sbjct: 485 EP 486


>gi|15222719|ref|NP_173972.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75263259|sp|Q9FZD4.1|PPR59_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g26500
 gi|9797751|gb|AAF98569.1|AC013427_12 Contains similarity to a hypothetical protein T12C14_170 gi|7340718
           from Arabidopsis thaliana BAC T12C14 gb|AL162507 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|332192576|gb|AEE30697.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 505

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/458 (31%), Positives = 245/458 (53%), Gaps = 41/458 (8%)

Query: 183 RVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA-GDKPG 240
           RVC ++  +  S D  + + L      L+H   + V   F  + RP  RFF ++    P 
Sbjct: 48  RVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYSQTHHPD 107

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           F H S T N M++I+G +R  +    + +E+G++GL++ +TF+I +   A+A+E KK V 
Sbjct: 108 FTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVN 167

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
            F LMN + +   V+T+N  +E L + KL +EA+ +F KLK    P+  TY  ++ G+C 
Sbjct: 168 YFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITYRTMIQGFCD 227

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVR 419
           V +L+EA ++WN M+D+GF  D+ A   ++E LLK  +  +A K+F VM +K G   +  
Sbjct: 228 VGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVSKRGGDLDGG 287

Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            Y +MI   CK                     +   +  LI G   +RR+   Y L++ +
Sbjct: 288 FYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLVEGV 347

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           E     PD   Y+ LIK L+KI++   EA  ++++M++ G +P +HTY M+++ +     
Sbjct: 348 EN----PDISIYHGLIKGLVKIKR-ASEATEVFRKMIQRGCEPIMHTYLMLLQGH----- 397

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
             +GR+      R+G  P  N  T+ +GG+I   +  E  KY+E  L++G++ P  DY+K
Sbjct: 398 --LGRRG-----RKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSK 450

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
           F    S      + +E+A+K+R    F+++++  R+ E
Sbjct: 451 FLHYYSNEEGVVMFEEMAKKLREVSLFDLADIFQRYGE 488


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 217/412 (52%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+V +++ +  +    +E  L E G+ +   L   VL R   A    +RFF WA  +P
Sbjct: 99  DVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQP 158

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G+ H+   Y +M+  LG+ RQF  + +++EEM ++   +L+ E F + M  FA+ +  KK
Sbjct: 159 GYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKK 218

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M KY  +       CLL+ L ++   KEA  LF+ ++ RF PNL  +T LL G
Sbjct: 219 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYG 278

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR   +MEA  V  ++ + GF+PD+V +N +L G  + GK  DA  L   MK     PN
Sbjct: 279 WCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPN 338

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             S+TI+I  FCK                     +   YT LI+GF      D  Y++L 
Sbjct: 339 AASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILD 398

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M ++G  P  L+Y  ++   + ++  +E + + +EM + G  P ++ YN +++   + G
Sbjct: 399 DMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLG 458

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + +   ++W EM   G  P  ++Y +++ G +SQ    EA  Y +EM+E+G+
Sbjct: 459 DLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGL 510


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 244/449 (54%), Gaps = 29/449 (6%)

Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
           DP   +R+CK+I         +E  LD   + ++ ++   VLER  +A   A+RFF WA 
Sbjct: 34  DP--AKRLCKLIISCRQAS-GLEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWAR 90

Query: 237 DK---PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK 293
            +    G AH  R+++++++ L + RQ++ M  ++  M  +G++++ETF I M  +A A+
Sbjct: 91  KQRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVETFGIIMRKYARAQ 150

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
           +  +AV  F +M KY     +   N LL  L +SK  ++AQ +F+++  RF+P+  TY++
Sbjct: 151 KVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSPDAKTYSI 210

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           LL GW R  NL +  +V+++M+D G +PD+V + IM++ L K G+  +A+ + + M ++G
Sbjct: 211 LLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRG 270

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
             P    Y++++  +  +                    +  VY  L+T F   ++ D  +
Sbjct: 271 CQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAF 330

Query: 454 DLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            ++ +ME  G  P+  T+N ++ KL+ + K  DEA R+++ M++   +P   TY M++K 
Sbjct: 331 RVMDDMEGHGITPNSRTWNIILNKLISLGK-DDEAYRVFRRMIKRC-QPDSDTYTMMIKM 388

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + +    EM  KVW  M  +   P  ++++VLI GL  +    +A   LE+M+EKG++ P
Sbjct: 389 FCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPP 448

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRF 601
              + K    L + GR  VL+ L  KM+ 
Sbjct: 449 GSTFGKLRQLLLKEGRKDVLEFLVDKMKI 477


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 251/466 (53%), Gaps = 33/466 (7%)

Query: 156 GECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVV 215
           G    ++ E+++++      AD     ++CK++ +    D  +E +L+E  + LS  L+ 
Sbjct: 48  GSFHASSVETQVSANDVSQDAD-----KICKILSKF--TDSKVETLLNEASVKLSPALIE 100

Query: 216 DVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG 275
           +VL++  +A   A   F WA ++ GF H +  YN+++  LG+ +QF+ + +++++M +K 
Sbjct: 101 EVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKK 160

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
           LLS +TF +    +A A++ K+A+  F  M  Y FK      N +L+ L +S+   +AQ 
Sbjct: 161 LLSKDTFALISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQK 220

Query: 336 LFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           +FDK+ K RF P++ +YT+LL GW +  NL+    V+ EM D+GF+PDVVA+ I++    
Sbjct: 221 VFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYC 280

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKFCKQN--------AA 434
           K  K  +A++ F  M+ +   P+   +  +I             +F +++        A 
Sbjct: 281 KAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAP 340

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKE 493
            Y  L+  +   +RM+  +  + EM  +G  P+  TY+ ++  L+++Q+   EA  +Y++
Sbjct: 341 TYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTK-EAYEVYQK 399

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M     +PT+ TY ++++ +      +M  K+WDEM  +G  P  + ++ LI  L  +++
Sbjct: 400 M---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENK 456

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             EA +Y  EML+ G++ P   +++    L   GR   + +LA KM
Sbjct: 457 LDEACEYFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKM 502


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 238/439 (54%), Gaps = 26/439 (5%)

Query: 184 VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAH 243
           VC+++      +  + + LD  G+ +S  LV +VL+   +A   A  FF WA  + GF++
Sbjct: 102 VCRIVST--QPEPKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSY 159

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
            +  +++++  LG+ +QF  + S++E M  +GLLS +TFK+ +  +A A++ K+AV  FE
Sbjct: 160 TAEGFHNLIEALGKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFE 219

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRV 361
            M+ +  K  +   N L++ L +SK  K+AQ ++ ++K +  F P+L TYTVL+ GW   
Sbjct: 220 KMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHE 279

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K+L+    ++ EMID G +PDVVA+ +++    K GK  +AIK+F  M+A G  P+   Y
Sbjct: 280 KDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVY 339

Query: 422 TIMI------------------WKFCKQNAAVYTC--LITGFGNRRRMDIVYDLLKEMEE 461
            ++I                  +K       V TC  ++  +    +    + ++ EM +
Sbjct: 340 CMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRK 399

Query: 462 RGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
               P+  TY+ ++  L+K QK  +EA  I++ M   G +P ++TY M++  +   G  +
Sbjct: 400 CKVGPNSRTYDVILHYLIKSQKF-EEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVD 458

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           M  KVW +M  +G  P  + ++ LI GL  ++R  EA  Y +EML+KG++ P   ++   
Sbjct: 459 MALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLK 518

Query: 581 ADLSRAGRSYVLDELAQKM 599
             L + GR  +  E+A K+
Sbjct: 519 EALVQGGRISLAQEVALKL 537



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 152/352 (43%), Gaps = 70/352 (19%)

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           S +  LG A   E +  +L+ +   G+L++  F+ A        ER++            
Sbjct: 116 STLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWA--------ERQEG----------- 156

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           F    +  + L+E LG+ K  +    L + ++ R   +  T+ +++  + R + + EA  
Sbjct: 157 FSYTAEGFHNLIEALGKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVE 216

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKF 428
            + +M   G K ++  +N +++ L K  +   A  +++ MK KG   P++++YT+     
Sbjct: 217 TFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTV----- 271

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                     L+ G+G+ +      DLL                 ++K M          
Sbjct: 272 ----------LMEGWGHEK------DLL-----------------MVKTM---------- 288

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
             Y+EM+ +G +P +  Y M++ ++ ++G  +   KV+ EM   GC P  + Y +LI GL
Sbjct: 289 --YQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGL 346

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            S++R  EA KY E   + G    V   N       RA +     ++  +MR
Sbjct: 347 GSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMR 398


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 247/456 (54%), Gaps = 30/456 (6%)

Query: 168 TSVSYKSTAD--PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR 225
           +SV  + +A+   ++ ER+CK++ +    D  +E +L+E  + LS  L+ +VL++  +A 
Sbjct: 51  SSVETQVSANDASQDAERICKILTKF--TDSKVETLLNEASVKLSPALIEEVLKKLSNAG 108

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285
             A   F WA ++ GF H +  YN+++  LG+ +QF+ + S++++M  K LLS ETF + 
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALI 168

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRF 344
              +A A++ K+A+  F  M ++ FK      N +L+ L +S+   +AQ +FDK+ K RF
Sbjct: 169 SRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRF 228

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ +YT+LL GW +  NL+    V  EM D+GF+PDVVA+ I++    K  K  +AI+
Sbjct: 229 EPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIR 288

Query: 405 LFEVMKAKGPSPNVRSYTIMI------------WKFCKQN--------AAVYTCLITGFG 444
            F  M+ +   P+   +  +I             +F +++        A  Y  L+  + 
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYC 348

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             +RM+  Y  + EM  +G  P+  TY+ ++  L+++Q+   EA  +Y+ M     +PT+
Sbjct: 349 WSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQR-SKEAYEVYQTM---SCEPTV 404

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY ++++ +      +M  K+WDEM  +G  P  + ++ LI  L  +++  EA +Y  E
Sbjct: 405 STYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNE 464

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           ML+ G++ P   +++    L   GR   + +L  KM
Sbjct: 465 MLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKM 500



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 122/281 (43%), Gaps = 25/281 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K  F  + ++Y  ++   G+      +  +  EM ++G    +  + I +NA   AK+ +
Sbjct: 225 KKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYE 284

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+  F  M +   K        L+  LG  K   +A   F++ K   F     TY  L+
Sbjct: 285 EAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALV 344

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G +C  + + +A +  +EM  KG  P+   ++I+L  L+++ +  +A ++++ M  +   
Sbjct: 345 GAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE--- 401

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           P V +Y IM+  FC +                       +++ LIT   +  ++D   + 
Sbjct: 402 PTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEY 461

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             EM + G  P G  ++ L + +  +   D+   +  +M R
Sbjct: 462 FNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDR 502


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 158/539 (29%), Positives = 267/539 (49%), Gaps = 54/539 (10%)

Query: 116 STNVVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKST 175
           STN V  SL   + A +++  N V      S+   NQ  D    GN+ E  +      S 
Sbjct: 185 STNGVEESLNPEHRALDVVTRNGVE----ESLISVNQTFD-LVGGNDVEERVLV----SD 235

Query: 176 ADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235
           AD     ++ K I    + + +ME  LD  G+ L+ +LV+++L +     + AFRFF WA
Sbjct: 236 AD-----KLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWA 290

Query: 236 GDKPGFAHNSRTYNSMMSILG----RARQFETMVSMLEEM--GEKGLLSMETFKIAMNAF 289
           G +  ++H  R YN M+ IL     + +QF  +  ML+ M   +K  + +E   + +  +
Sbjct: 291 GHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY 350

Query: 290 AAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
                 K    + +   K K +      ++ +N LL+ L +  L ++AQ +F ++K++  
Sbjct: 351 T----EKHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVK 406

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TY +L  GWCRV+N     RV  EMI+ G  PD   +N  ++   K G  ++A +L
Sbjct: 407 PDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATEL 466

Query: 406 FEVMKAKGP---SPNVRSYTIMI------------WKFCKQ--------NAAVYTCLITG 442
           FE M+ KG    SP  ++Y IMI            +K  K         + + Y  +I G
Sbjct: 467 FEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEG 526

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                +++  Y  L+EM  +G  PD +TYN  + ++   K  +EA+ +Y  M+ +G  P+
Sbjct: 527 MCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPS 586

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           +HT+NM++  +F+ G  +   + W EM +RGC  D ++Y V+I GL + ++  +A   L+
Sbjct: 587 VHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLD 646

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           E++ KG+K P   ++ F   LS  G    + +L++ MR   KF    +  R+A   K R
Sbjct: 647 EVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMR---KFYNPAMARRFALNQKRR 702


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/539 (29%), Positives = 267/539 (49%), Gaps = 54/539 (10%)

Query: 116 STNVVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKST 175
           STN V  SL   + A +++  N V      S+   NQ  D    GN+ E  +      S 
Sbjct: 158 STNGVEESLNPEHRALDVVTRNGVE----ESLIPVNQTFD-LVGGNDVEERVLV----SD 208

Query: 176 ADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235
           AD     ++ K I    + + +ME  LD  G+ L+ +LV+++L +     + AFRFF WA
Sbjct: 209 AD-----KLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWA 263

Query: 236 GDKPGFAHNSRTYNSMMSILG----RARQFETMVSMLEEM--GEKGLLSMETFKIAMNAF 289
           G +  ++H  R YN M+ IL     + +QF  +  ML+ M   +K  + +E   + +  +
Sbjct: 264 GHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY 323

Query: 290 AAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
                 K    + +   K K +      ++ +N LL+ L +  L ++AQ +F ++K++  
Sbjct: 324 T----EKHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVK 379

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TY +L  GWCRV+N     RV  EMI+ G  PD   +N  ++   K G  ++A +L
Sbjct: 380 PDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATEL 439

Query: 406 FEVMKAKGP---SPNVRSYTIMI------------WKFCKQ--------NAAVYTCLITG 442
           FE M+ KG    SP  ++Y IMI            +K  K         + + Y  +I G
Sbjct: 440 FEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEG 499

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                +++  Y  L+EM  +G  PD +TYN  + ++   K  +EA+ +Y  M+ +G  P+
Sbjct: 500 MCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPS 559

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           +HT+NM++  +F+ G  +   + W EM +RGC  D ++Y V+I GL + ++  +A   L+
Sbjct: 560 VHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLD 619

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           E++ KG+K P   ++ F   LS  G    + +L++ MR   KF    +  R+A   K R
Sbjct: 620 EVINKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMR---KFYNPAMARRFALNQKRR 675


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 220/414 (53%), Gaps = 23/414 (5%)

Query: 179 REIER-VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           + IE+ V +++ +  S    +E  L E G+ +   L   VL R   A    +RFF WA  
Sbjct: 88  KAIEKTVYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASK 147

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKER 295
           +PG+ H+   Y +M+ ILG+ RQF  + +++EEM  +    +S   F + M  FA+A+  
Sbjct: 148 QPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMV 207

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA+ + + M KY  +       CLL+ L ++   KEA  LF+ ++ RFTP L  +T LL
Sbjct: 208 KKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLL 267

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GWCR   LMEA  V  ++ + GF+PD+V +N +L G    GK  DA  L + M+ K   
Sbjct: 268 YGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECE 327

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV S+T +I   C +                    +A  YT LI+GF    ++   Y+L
Sbjct: 328 PNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYEL 387

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L  M ++G  P+ +TY  ++   + ++  +E + + +EM + G  P ++ YN++++   +
Sbjct: 388 LDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACK 447

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            G  + G +VW+EM   G  P  +++ ++I G +SQ    EA ++ +EM+ +G+
Sbjct: 448 LGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGL 501



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 34/188 (18%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL----------------M 478
           V+  L+  F + R +    ++L EM + GC PD   +  L+                  M
Sbjct: 193 VFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM 252

Query: 479 KIQKMPD------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           +I+  P                   EA  +  ++  +GF+P I  YN ++  Y   G   
Sbjct: 253 RIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMV 312

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +  EM R+ C P+  S+T LI  L ++ +  EA +   EM   G  A  + Y    
Sbjct: 313 DAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLI 372

Query: 581 ADLSRAGR 588
           +   + G+
Sbjct: 373 SGFCKWGK 380



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK---IQKMPDEAVRIY 491
           VY  +I   G  R+   V+ L++EM      P  ++    + LM+     +M  +A+ + 
Sbjct: 157 VYKAMIKILGKMRQFGAVWALIEEMRREN--PQFVSPYVFVVLMRRFASARMVKKAIEVL 214

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM + G +P  H +  ++ +  + G+ +    ++++M R    P    +T L+ G   +
Sbjct: 215 DEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM-RIRFTPTLKHFTSLLYGWCRE 273

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +  EA   L ++ E G +  ++ YN      + AG+     +L ++MR
Sbjct: 274 GKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMR 322


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 226/423 (53%), Gaps = 22/423 (5%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA 258
           + +L++  I +S +LVV+VL+R  +A   A  FF WA  + GF +N+ +YN+++  LG+ 
Sbjct: 111 DKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKGFKYNTESYNALIEALGKI 170

Query: 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +QF+ + S++ EM  + LL+ +TF +     A A++ ++A+  FE M ++ FK      N
Sbjct: 171 KQFKLIRSLVNEMKSRKLLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFN 230

Query: 319 CLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            LL+ L +S+  ++A  +FDK+ K RF P++ +YT+LL GW +  NL+    V+ EM   
Sbjct: 231 RLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYD 290

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------ 425
           GF+PDVV + I++    K  K   AI+LF  M+AK   P    Y  +I            
Sbjct: 291 GFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEA 350

Query: 426 ------WKFC--KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
                 +K C     A  Y  L+  +    R+D  + ++ EM +    P+  TY+ ++  
Sbjct: 351 LEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHH 410

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L+K ++  +   R  K     G +PT+ TY +I++ +      ++ ++VWD+M  +G  P
Sbjct: 411 LIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLP 470

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
             + Y+ LI  L  +++ GEA KY +EML+ G++ P   ++     L   G++     LA
Sbjct: 471 GMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLA 530

Query: 597 QKM 599
           +K+
Sbjct: 531 RKI 533


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 231/425 (54%), Gaps = 22/425 (5%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           ++E++L+   +++S  LV++VL++  ++   A  FF WA  + GF +++  YN+++  LG
Sbjct: 97  SIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALG 156

Query: 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
           + +QF+ + +++ +M  KGLL+ ETF +    +A A++ K+AV  FE M K+  +  +  
Sbjct: 157 KIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVETFEKMEKFGLQPVLSD 216

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            N LL+ L +S+  + AQ +FDK+K R F P++ +YT+LL GW + +NL+    V+ EM 
Sbjct: 217 FNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMK 276

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------- 425
           D+GF+PD V + I++    K  +   A++LF  M+A    P    Y  +I          
Sbjct: 277 DEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLT 336

Query: 426 --WKFCKQN--------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
              +F +++        A  Y  ++  +    RMD  Y ++ EM + G  P   TY+ ++
Sbjct: 337 EALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIIL 396

Query: 476 KLMKIQKMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             +   +   EA R+++ M    G +P++ TY ++++ +      +M  +VWDEM  +G 
Sbjct: 397 HHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGV 456

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P  + ++ LI  L  +++  EA KY  EML+ G++ P   ++     L   G+  ++  
Sbjct: 457 LPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLI 516

Query: 595 LAQKM 599
           LAQK+
Sbjct: 517 LAQKL 521



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 129/327 (39%), Gaps = 63/327 (19%)

Query: 298 AVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A++ F    K K FK   +  N L+E LG+ K  K    L + ++ +      T+ ++  
Sbjct: 128 ALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISR 187

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            + R + + EA   + +M   G +P +   N +L+ L K      A ++F+ MK +   P
Sbjct: 188 RYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRP 247

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +++SY               T L+ G+G  +                          L++
Sbjct: 248 DIKSY---------------TILLEGWGQEQN-------------------------LLR 267

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L       DE   +Y+EM   GF+P   TY +++ ++ +   Y+   +++ +M    C P
Sbjct: 268 L-------DE---VYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMP 317

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
             + Y  LI GL S+ R  EA ++ E     G       YN             V+    
Sbjct: 318 TPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNA------------VVGSYC 365

Query: 597 QKMRFSGKFEVSNVLARWAETTKNRVY 623
           Q MR    + + + + +     + R Y
Sbjct: 366 QSMRMDDAYRIVDEMRKCGVGPQTRTY 392


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 127/413 (30%), Positives = 212/413 (51%), Gaps = 23/413 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E+E++ +++    S    +E  L+E GI+L   L++ VL R   A    +RFF WA  +P
Sbjct: 66  EVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQP 125

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G+ H+     SM+ IL + RQF  +  ++EEM +    L+  E F + M  FA+A   KK
Sbjct: 126 GYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M KY  +       CLL+ L ++   KEA  +F+ ++ +F PNL  +T LL G
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYG 245

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR   LMEA  V  +M + G +PD+V    +L G    GK +DA  L   M+ +G  PN
Sbjct: 246 WCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPN 305

Query: 418 VRSYTIMIWKFCK---------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
           V  YT++I   C+                      +   YT LI+GF     +D  Y +L
Sbjct: 306 VNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVL 365

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +M ++G  P  +TY  ++   + ++  +E + + ++M R G  P +  YN++++   + 
Sbjct: 366 DDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKL 425

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           G  +   ++W+EM   G  P  +++ ++I G  SQ    EA  + +EM+ +G+
Sbjct: 426 GEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI 478


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 226/461 (49%), Gaps = 46/461 (9%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           NME  L + GI LS  LV  VL R R+  + A RFF WAG +  ++H    YN MM IL 
Sbjct: 9   NMEKALGQLGIPLSTPLVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILS 68

Query: 257 RAR----QFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAK-------ERKKAVAIFE 303
             R    QF  +  +LE M    K  + +E   + +  +            RK+ + +  
Sbjct: 69  STRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYTEKYLTHVQKFARKRRIRV-- 126

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
                K +  ++  N LL+ L +  L ++A+ L+ K++    PN  TY + + GWCRV+N
Sbjct: 127 -----KTQPEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVRN 181

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS---PNVRS 420
                ++  EM++ G +PD  A+N  ++   K G  ++A+ LFE M+ KG S   P  ++
Sbjct: 182 PTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKT 241

Query: 421 YTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y I+I                       C  +   Y  +I G     ++D  Y  L+EM 
Sbjct: 242 YAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMG 301

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +   PD +TYN  +K++   K  ++A+++Y  M+     P++ TYNM++  +F+  + +
Sbjct: 302 NKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPD 361

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              + W EM  RGC PD ++Y+V+I GL + ++  +A   LEE++ KG+K P   ++ F 
Sbjct: 362 GAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKLPYKKFDSFL 421

Query: 581 ADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
             LS  G    +  +++ MR   KF    +  R+A + K +
Sbjct: 422 MQLSVIGDLQAIHRVSEHMR---KFYNHGMARRYALSQKRK 459


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 238/438 (54%), Gaps = 24/438 (5%)

Query: 184 VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAH 243
           +C+++ +  + + ++E +L      +S  LV++VL+R  +A   A  FF WA  + GF +
Sbjct: 88  ICRLLSK--NPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQKGFMY 145

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           N+ +YN+++  LG+ +QF  + +++ +M  KG+L+ ETF +    +A + + K+A+  FE
Sbjct: 146 NTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGKVKEAMNTFE 205

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVK 362
            M K+  K      N LL+ L +S+    AQ +FDK+K  RF P++ +YT+LL GW + K
Sbjct: 206 KMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEK 265

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPN--- 417
           NL++   V+ EM D+GF+PDVV + I++    K+ K  DAI+LF  M++K   PSP+   
Sbjct: 266 NLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFC 325

Query: 418 --------VRSYTIMIWKFCKQNAA-------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
                   VR  +  +  F +  A+        Y  ++  +    R+D  Y ++ EM + 
Sbjct: 326 TLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKS 385

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV-RSGFKPTIHTYNMIMKSYFQTGNYEM 521
           G  P+  TY+ ++  +   +   EA  ++++M      +PT+ TY++I++ +      E 
Sbjct: 386 GVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVES 445

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             KVWD M  +G  P  + +++LI  L  +++   A KY +EML+ G++ P   ++    
Sbjct: 446 AIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQ 505

Query: 582 DLSRAGRSYVLDELAQKM 599
            L   GR   +  LAQK+
Sbjct: 506 ALIEDGRKDTVVLLAQKI 523


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/399 (32%), Positives = 210/399 (52%), Gaps = 28/399 (7%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D ++   L      +  ++V+ VL++ R   + A  FF WA   P +AH  RTY  M+ I
Sbjct: 96  DTDLGKALHRFAGEMDEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRTYTEMLDI 155

Query: 255 LGRARQFETMVSMLEEMGE--KGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           LGR ++ + M  + +E+ E  +GL+ +  TF + +N +A A + ++A+ +F     Y F+
Sbjct: 156 LGRMKKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFE 215

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             +     LL +L R K  +EA+ LF + K  F P + ++ ++L GWC   +L +A R+W
Sbjct: 216 VDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRIW 275

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--- 428
           N++I    KPD+  +   +  L K GK S A+KLF  M  KG +P+V     +I +    
Sbjct: 276 NQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFK 335

Query: 429 -----------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                            C+ + A Y  LI  F   RR + VY+LL +ME +GC P+ +TY
Sbjct: 336 KKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTY 395

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG-RKVWDEMI 530
           +    ++K  + P + + + + M +SG +    TYN+I+  Y     YE G ++VWDEM 
Sbjct: 396 SY---ILKTTEKPKDVIHLLQRMEKSGCRLDSDTYNLILNLYVSM-KYENGVQQVWDEME 451

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           R G  PD  S+T+++ GL SQ R  +A +Y   M  +GM
Sbjct: 452 RNGSGPDQRSFTIMVHGLHSQGRLDQALQYYTTMKSRGM 490



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 128/327 (39%), Gaps = 59/327 (18%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLME 366
           +  G  T   +L+ LGR K  K    LFD++            T+ VLL  +     + E
Sbjct: 142 YAHGPRTYTEMLDILGRMKKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQE 201

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  ++ +  D GF+ D+V   I+L  L +     +A  LF   K + P P ++S+ I++ 
Sbjct: 202 AIEMFYKRKDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP-PVIKSWNIILN 260

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
            +C + +                                                 +PD 
Sbjct: 261 GWCVKGS-------------------------------------------------LPD- 270

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A RI+ +++ S  KP + TY   + S  + G      K++  M  +G  PD      +I 
Sbjct: 271 AKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIID 330

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYN---KFAADLSRAGRSY-VLDELAQKMRFS 602
            L  + +  EA     EM ++G +A V  YN   K+   + R  + Y +LD++  K    
Sbjct: 331 QLCFKKKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSP 390

Query: 603 GKFEVSNVLARWAETTKNRVYRKDRIE 629
                S +L +  E  K+ ++   R+E
Sbjct: 391 NNMTYSYIL-KTTEKPKDVIHLLQRME 416



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 34/212 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY + ++ L +A +  T V +   M EKG+   +      ++     K+  +A+ IF  M
Sbjct: 289 TYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFREM 348

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG-------- 356
                +A V T N L++   + +  ++   L D ++++  +PN  TY+ +L         
Sbjct: 349 TDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYILKTTEKPKDV 408

Query: 357 ---------GWCRVK----NLM---------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
                      CR+     NL+         E G  +VW+EM   G  PD  +  IM+ G
Sbjct: 409 IHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQVWDEMERNGSGPDQRSFTIMVHG 468

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           L   G+   A++ +  MK++G +P  R+  ++
Sbjct: 469 LHSQGRLDQALQYYTTMKSRGMTPEPRTRILV 500


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 214/417 (51%), Gaps = 24/417 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E+E++ +++    S    +E  L+E GI+L   L++ VL R   A    +RFF WA  +P
Sbjct: 66  EVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQP 125

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G+ H+     SM+ IL + RQF  +  ++EEM +    L+  E F + M  FA+A   KK
Sbjct: 126 GYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M KY  +       CLL+ L ++   KEA  +F+ ++ +F PNL  +T LL G
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYG 245

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR   LMEA  V  +M + G +PD+V    +L G    GK +DA  L   M+ +G  PN
Sbjct: 246 WCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPN 305

Query: 418 VRSYTIMIWKFCK---------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
           V  YT++I   C+                      +   YT LI+GF     +D  Y +L
Sbjct: 306 VNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVL 365

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +M ++G  P  +TY  ++   + ++  +E + + ++M R G  P +  YN++++   + 
Sbjct: 366 DDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKL 425

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAP 572
           G  +   ++W+EM   G  P  +++ ++I G  SQ    EA  + +EM+ +G+  AP
Sbjct: 426 GEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAP 482


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 227/422 (53%), Gaps = 21/422 (4%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ++  LD+ G+ +S  +V DVL++F +A   A+RFF WA  +  + H+ + +++++  L +
Sbjct: 9   LDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVIDSLAK 68

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            RQ++ M  +++ M  K ++++ETF I M  +A A++ ++AV  F +M+KY     +   
Sbjct: 69  IRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAF 128

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N LL  L +SK  ++AQ +FD +K RF P+  TY++LL GW +  NL +A  ++ EM+  
Sbjct: 129 NGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSN 188

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN----- 432
           G +PD+V + IM++ L K G+  +A+ +   M +    P    Y++++  +  +N     
Sbjct: 189 GCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDA 248

Query: 433 ---------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                           AVY  LI  F    R+  VY +L EM+ +G  P+  T+N ++  
Sbjct: 249 VSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSS 308

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +   DEA R++  M++   +P   TY M++K + +    +   KVW  M  +   P 
Sbjct: 309 LIGRGETDEAYRVFLRMIKVC-EPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPS 367

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            +++ VLI GL  +    +A   LEEM+EKG++   + + +    L + GR  VL  L +
Sbjct: 368 MHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQK 427

Query: 598 KM 599
           K+
Sbjct: 428 KI 429


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 230/452 (50%), Gaps = 29/452 (6%)

Query: 140 NYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNME 199
           N RN   V       +   D +NS S++   +       +++E+V +++    S    +E
Sbjct: 42  NLRNGFGVVCLKTQENNTSDRDNSSSKVDEFA-------KDVEKVYRILRNFHSRVPKLE 94

Query: 200 AVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR 259
             L E G+ +   L   VL R   A    +RFF WA  +PG+ H+   Y +M+ I  + R
Sbjct: 95  LALQESGVTMRAGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMR 154

Query: 260 QFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
           QF  + ++LEEM +    L++ E F + +  FA+A+  +KA+ + + M KY  +      
Sbjct: 155 QFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVF 214

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            CLL+ L ++   K+A  LF+ ++ RF+P+L  +T LL GWCR   L+EA  V  +M + 
Sbjct: 215 GCLLDALCKNGSVKQAASLFEDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREA 274

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           GF+PD+V  N +L      GK +DA  L + M  KG  PN  SYTIMI  FC Q      
Sbjct: 275 GFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEA 334

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         +   YT LI+GF    +++  Y +L  M+++G  P+ LTY  ++  
Sbjct: 335 MRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLA 394

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
            + ++  +E + + + M   G  P +  YN++++   + G  + G ++W+EM      P+
Sbjct: 395 HEKKEELEECLELIESMRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPE 454

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +++ ++I G + Q    EA +Y +EM+ +G+
Sbjct: 455 LDTFVIMIHGFLGQGCLVEACEYFKEMIGRGL 486



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 38/205 (18%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL-------------- 477
            + ++  LI  F + R ++   ++L EM + GC PD   +  L+                
Sbjct: 175 TSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLF 234

Query: 478 --MKIQKMPD------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
             M+++  P                   EA  +  +M  +GF+P I  +N ++ +Y   G
Sbjct: 235 EDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAG 294

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                  +  EM+R+GC P+ NSYT++I    SQ++  EA +   EM   G +A V+ Y 
Sbjct: 295 KMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYT 354

Query: 578 KFAADLSRAG---RSY-VLDELAQK 598
              +   + G   R Y +LD + QK
Sbjct: 355 ALISGFCKWGKINRGYQILDAMKQK 379


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 214/412 (51%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+V +++ +  S    +E  L E G+ L + L   VL R   A   A++FF WA  +P
Sbjct: 50  DVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASKQP 109

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
            + H    Y +M+ +L + +QF  + ++LEEM      L++ E F + M  FA+++   K
Sbjct: 110 CYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNK 169

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ + + M KY  +       CLL+ L ++   KEA  LF+ ++ RF+P+L  +T LL G
Sbjct: 170 AIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLKHFTCLLYG 229

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WC+   L+EA  V  +M + GF+PD+V +N +L G    GK  DA  L + ++ KG  PN
Sbjct: 230 WCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPN 289

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             SYTI+I   C Q                    +   YT L++GF   R +D  Y +L+
Sbjct: 290 ATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQ 349

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M ++G  P+ LTY  L+   + ++  +E   +  EM + G  P +  YN++++   + G
Sbjct: 350 SMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLG 409

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
               G   W+EM   G  P  +++ ++I G +      EA +Y +EM+E+G+
Sbjct: 410 EVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGL 461



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/194 (19%), Positives = 86/194 (44%), Gaps = 12/194 (6%)

Query: 418 VRSYTIMIW-------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME-ERGCPPDGL 469
           + +Y   +W       + C +N   Y  +I      ++   V+ LL+EM  +        
Sbjct: 96  ILAYKFFVWASKQPCYRHCYEN---YKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSE 152

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
            +  +++     +M ++A+ +  EM + G +P  + +  ++ +  + G+ +    ++++M
Sbjct: 153 VFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM 212

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            R    P    +T L+ G   + +  EA   L +M E G +  ++ YN   +  + AG+ 
Sbjct: 213 -RVRFSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKM 271

Query: 590 YVLDELAQKMRFSG 603
               +L +++R  G
Sbjct: 272 GDAFDLLKEIRRKG 285


>gi|224138618|ref|XP_002322859.1| predicted protein [Populus trichocarpa]
 gi|222867489|gb|EEF04620.1| predicted protein [Populus trichocarpa]
          Length = 502

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 246/475 (51%), Gaps = 32/475 (6%)

Query: 162 NSESEITSVSYKSTADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLER 220
            +ES  T  S  S  +   + RVC V+  +  S D  +   L     NL+H   + V  +
Sbjct: 21  TTESSQTYPSSPSPVNEDHLLRVCTVLFQQQDSSDFKLRNKLSSIDFNLTHEFFLQVCNK 80

Query: 221 FRHARRPAFRFFCWAGDKPG--FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
           F  + RP  RFF +    P   F H S + N M+ I GR+R  + +   ++EM ++GL++
Sbjct: 81  FPASWRPVHRFFQYTQQMPCSRFTHTSVSLNKMLDIFGRSRNLDLLWGAVQEMAKRGLVN 140

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
            +TF I + A A+A+E KK    F  MN++  +  V+ +N ++ENL + KL +EA+ +  
Sbjct: 141 DKTFIIVLKALASARELKKCAEFFHFMNEHGCEYRVERLNKVVENLCKGKLVEEAKFVVL 200

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           KLK    P+  TY  L+ G+C V  L+EA ++WN M+D+  +P++     M+E L K  +
Sbjct: 201 KLKDWIRPDGVTYGWLVKGFCDVGELIEASKIWNLMVDESIEPEIEVFEKMMETLFKRNE 260

Query: 399 RSDAIKLFEVMKA-KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD------- 450
             +A+K+F+ M+  +     + +Y ++I   C++   V   ++     +R +        
Sbjct: 261 YDEALKVFQTMRVNRMDDLALSTYRLVIDWMCRKGKVVQAQMVFDEMRQRGIQADNSTLG 320

Query: 451 -IVYDLL--------KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            +VY LL         ++ ER    D   Y+ LIK +   +   EA ++++EM+  G +P
Sbjct: 321 SLVYGLLTRGRHAEAHKVVERIEKTDISVYHGLIKGLVRSRRASEATQVFREMINRGCEP 380

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           T+HTY M+++ +       +G++      R+G  P  N  ++ +GGLI   +S EA KY+
Sbjct: 381 TMHTYIMLLQGH-------LGKRG-----RKGPDPLVNFESIFVGGLIKAGKSLEATKYV 428

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
           E  ++  ++ P  DYNKF    S      +  E+ +K+R +G  +++++L R+ E
Sbjct: 429 ERTMKGSLEVPRFDYNKFLHYYSSEEGVVMFKEVGKKLREAGFVDLADILQRYGE 483


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/414 (32%), Positives = 214/414 (51%), Gaps = 32/414 (7%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E+ RV K  D    L + +    DE    +  ++V+ VL++ R   + A  FF WA   P
Sbjct: 85  EVLRVLKSCDADADLSKYLCWFADE----IDEDVVLKVLQKQRSNWQVALLFFTWAAGLP 140

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE--KGLL-SMETFKIAMNAFAAAKERK 296
            + H  RTY  M+ ILGR ++   M  + +E+ E  +GL+ +   F + +N +A A + +
Sbjct: 141 TYEHGPRTYIEMLDILGRMKKVRLMRQLFDEIPEQRRGLVVTNRMFAVLLNRYAGAHKVQ 200

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A+ IF   N Y F+  +     LL +L R K  +EA+ LF + K  F P + ++ ++L 
Sbjct: 201 EAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILN 260

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           GWC   +L +A RVWNE+I    KPD+  +   +  L K GK S A+KLF  M  KG +P
Sbjct: 261 GWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKLSTAVKLFTSMWEKGINP 320

Query: 417 NVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           +V     +I +                     C+ + A Y  LI  F   RR + VY+LL
Sbjct: 321 DVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLIKHFCKIRRTEKVYELL 380

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +ME++GC P+ +TY     ++K  + P + + + + M  SG K    TYN+I+  Y   
Sbjct: 381 DDMEKKGCSPNNMTYTY---ILKTTEKPRDVMNLIQRMEESGCKLDSDTYNLILNLYVSM 437

Query: 517 GNYEMG-RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             YE G ++VW+EM R G  PD  S+T+++ GL SQ +  +A +Y   M  +GM
Sbjct: 438 -KYEKGVQQVWEEMERNGSGPDQRSFTIMVHGLHSQGQLDQALQYYTTMKSRGM 490



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  L+  +    ++    ++  +  + G   D + +  L+  +   K  +EA  ++ + 
Sbjct: 185 MFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQK 244

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            +  F P I ++N+I+  +   G+    ++VW+E+I     PD  +Y   I  L    + 
Sbjct: 245 -KDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKAGKL 303

Query: 555 GEAYKYLEEMLEKGMKAPV 573
             A K    M EKG+   V
Sbjct: 304 STAVKLFTSMWEKGINPDV 322


>gi|357487519|ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
 gi|355515382|gb|AES97005.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
          Length = 507

 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 248/492 (50%), Gaps = 66/492 (13%)

Query: 174 STADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           +  +  E+ +VC ++  +  S D  + + L     NL+H   + V   F ++ RP +RFF
Sbjct: 30  TPVNREELLKVCTILYQQQNSPDSRLHSKLTSSNFNLTHEFFLQVCNNFPYSWRPVYRFF 89

Query: 233 CWAGDK--PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290
            +   +    F H   ++N M+ ++ ++R  +   S++ E   +GL++ +TF I +    
Sbjct: 90  LFTQQEKNSSFTHTHVSFNKMLDVVAKSRNIDLFWSLVNETARRGLVNNKTFVIGLKTLG 149

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT 350
            A+E KK V  F LMN   +   V+ +N ++E + + KL +EA+ +  K+K     +  +
Sbjct: 150 GARELKKCVEFFHLMNLNGYGYSVERLNKVVEEMCKVKLVEEAKFVVFKMKDLIKLDGVS 209

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV-VAHNIMLEGLLKIGKRSDAIKLFEVM 409
           Y  L+ G+C   +L+EA ++WN M+D+GF PDV V  N M E   K+ +  + +KLF+ M
Sbjct: 210 YKWLISGFCEKGDLIEASKIWNLMVDEGFVPDVDVVENFM-ETFFKVNQFGEGLKLFQTM 268

Query: 410 KAKGPSP-NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           + K      V +Y ++I   CK+                 MD  +++  EM ERG   D 
Sbjct: 269 RLKRMDELGVSTYRVVIKWLCKKGM---------------MDNAHEVFDEMCERGIRVDS 313

Query: 469 LT-------------------------------YNALIK-LMKIQKMPDEAVRIYKEMVR 496
           LT                               Y+ LIK L+K+++   EA ++++EM++
Sbjct: 314 LTLGYVVYGLLAKHRVREAYQIVEKIDVVDISVYHGLIKGLLKLRR-ASEATQVFREMIK 372

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +PT+HTY M+++ +       +GR+      R+G  P  N  ++ +GG++    S E
Sbjct: 373 RGCEPTMHTYIMLLQGH-------LGRRG-----RKGTDPLVNFDSIFVGGMVKVGHSKE 420

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
           A KY+E ++ +GM+ P  DYNKF    S    + + +E+A+K+R  G  +++++L R+ +
Sbjct: 421 AIKYVERVMNRGMEVPRFDYNKFLHYFSNEEGAVMFEEVAKKLREVGLVDLADILERYGQ 480

Query: 617 TTKNRVYRKDRI 628
               R  R++R 
Sbjct: 481 KMSTRDRRRNRF 492


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 228/465 (49%), Gaps = 54/465 (11%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LDE  ++L+  +V  +L+R ++  + AFRFF WAG +  ++H    YN M+ IL 
Sbjct: 111 DMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILS 170

Query: 257 ----RARQFETMVSMLEEMGEKG--------LLSM-----ETFKIAMNAFAAAKERKKAV 299
               + +QF  ++ ML+ M            LL +     E +   +  FA   +RK+  
Sbjct: 171 STKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFA---KRKRI- 226

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
                  + K +  ++  N LL+ L +  L KE + L  +++HR  P+  T+ VL  GWC
Sbjct: 227 -------RVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWC 279

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS---P 416
           RV++  +A ++  EMI+ G KP+   +   ++   + G   +A  LF+ M  KG +   P
Sbjct: 280 RVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAP 339

Query: 417 NVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLL 456
             +++ +MI    K + A                     Y  +I G     ++D  Y  L
Sbjct: 340 TAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFL 399

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM  +G PPD +TYN  ++++   +  DEA+++Y  MV S   P++ TYNM++  +F+ 
Sbjct: 400 DEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEM 459

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + +     W EM +R C  D  +Y  +I GL    R+ EA   LEE++ KG+K P   +
Sbjct: 460 DDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVF 519

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           + F   LS  G    + ++++ M+   KF   ++  R+A + K +
Sbjct: 520 DSFLMRLSEVGNLKAIHKVSEHMK---KFYNHSMARRFALSEKRK 561


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 214/412 (51%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+  +++ +  S    +E  L+E G+ L   L+  VL R   A    +RFF WA  +P
Sbjct: 82  DVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQP 141

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
            + H+   Y SM+ IL + RQF  +  ++EEM ++   L+  E F + +  FA+A   KK
Sbjct: 142 RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK 201

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ + + M K+ F+       CLL+ L +    K+A  LF+ ++ RF  NL  +T LL G
Sbjct: 202 AIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYG 261

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCRV  +MEA  V  +M + GF+PD+V +  +L G    GK +DA  L   M+ +G  PN
Sbjct: 262 WCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPN 321

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
              YT++I   CK                     +   YT L++GF    ++D  Y +L 
Sbjct: 322 ANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLD 381

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M ++G  P  LTY  ++   + ++  +E + + ++M +  + P I  YN++++   + G
Sbjct: 382 DMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLG 441

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +   ++W+EM   G  P  +++ ++I GL SQ    EA  + +EM+ +G+
Sbjct: 442 EVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 229/476 (48%), Gaps = 56/476 (11%)

Query: 187 VIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR 246
           VI+         EA LD  G  L+  LV DVL R R+  + AFRFF WA  + G+ H + 
Sbjct: 88  VIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQGGYEHEAA 147

Query: 247 TYNSMMSILG----RARQFETMVSMLEEMGEK-----------GLLSMETFKIAMNAFAA 291
           TYN ++ IL     +ARQF  +  +L+ M  +           G+L   T K   +    
Sbjct: 148 TYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKL 207

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
           AK+R+          + +     D +N LL+   +S + +EA+ +F ++K +   N  TY
Sbjct: 208 AKKRRV---------RMRTPPETDALNVLLDAFCKSGMVREAEAVFSRVKRKLLGNAETY 258

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           ++L  GWCR ++   A +V  EMI     P+   +N  ++     G  S+A  LFE M+ 
Sbjct: 259 SILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRT 318

Query: 412 KGP---SPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRR 448
           +G    SP  ++Y+IMI                       C  + + Y  LI G     +
Sbjct: 319 EGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDK 378

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +D  Y +L EM + G PPD +TYN  +K++   +  D+A+ + + M+ +  +P++HTYNM
Sbjct: 379 LDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNM 438

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +M  +F+    +    +W EM +RGC    ++Y  +I GL    R+ +A   L+E++ +G
Sbjct: 439 LMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRG 498

Query: 569 MKAPVLDYNKFAA---DLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           MK   L Y KF A    LS  G    +  L++ MR   +F    +  R+A T K +
Sbjct: 499 MK---LSYKKFDAIMLRLSAVGNLGAIHRLSEHMR---RFYNVAMSRRFAITQKKK 548


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 217/411 (52%), Gaps = 28/411 (6%)

Query: 183 RVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFA 242
           +V KV+    + + ++   L +  +++  ++++ VL++ R   + A  FF WA   PG+A
Sbjct: 82  QVLKVLKSTSADNTDLSGALHQFAVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYA 141

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGE---KGLLSMETFKIAMNAFAAAKERKKAV 299
           H SR Y  M+ ILGR ++   M  + +E+ E   + +++ + F + +N +A A + ++A+
Sbjct: 142 HGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAI 201

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
            +F L   Y F+  +     LL +L R K  +EA+ LF + K  F     ++ ++L GWC
Sbjct: 202 EVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWC 261

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
              +L +A R+WN++I    + D+      +  L K G+ S A+KLF+ M  KG +P+V 
Sbjct: 262 VKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVA 321

Query: 420 SYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
               +I                     + C+ + A Y  LI      +RM+ VY+LL +M
Sbjct: 322 ICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDM 381

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           E +GCPP+  TY+    ++K  + P + + + + M R+G K     YN+I+  Y +   Y
Sbjct: 382 EAKGCPPNNRTYSY---ILKTTEKPKDVIALMQRMERTGCKLDSDIYNLILNLYIK-WKY 437

Query: 520 EMG-RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           E G +++WDEM RRG  PD  S+T+++ GL SQ +  EA +Y   M  +GM
Sbjct: 438 EKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGM 488



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 34/222 (15%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+ + ++ L +  +    V + ++M EKG+   +      ++     K+  +A+ IF  M
Sbjct: 287 TFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCIIDQLCFKKKIPEALEIFGEM 346

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           N    +A V T N L++ + + K + K  +LL D       PN  TY+ +L    + K++
Sbjct: 347 NDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCPPNNRTYSYILKTTEKPKDV 406

Query: 365 M------------------------------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
           +                              E G  ++W+EM  +G  PD  +  IM+ G
Sbjct: 407 IALMQRMERTGCKLDSDIYNLILNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHG 466

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           L   GK  +A++ +  MK++G  P  R+  ++     K++ A
Sbjct: 467 LHSQGKLDEALQYYTTMKSRGMIPEPRTKILVKAMHMKKDGA 508


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 228/465 (49%), Gaps = 54/465 (11%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LDE  ++L+  +V  +L+R ++  + AFRFF WAG +  ++H    YN M+ IL 
Sbjct: 9   DMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILS 68

Query: 257 ----RARQFETMVSMLEEMGEKG--------LLSM-----ETFKIAMNAFAAAKERKKAV 299
               + +QF  ++ ML+ M            LL +     E +   +  FA   +RK+  
Sbjct: 69  STKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFA---KRKRI- 124

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
                  + K +  ++  N LL+ L +  L KE + L  +++HR  P+  T+ VL  GWC
Sbjct: 125 -------RVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWC 177

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS---P 416
           RV++  +A ++  EMI+ G KP+   +   ++   + G   +A  LF+ M  KG +   P
Sbjct: 178 RVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAP 237

Query: 417 NVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLL 456
             +++ +MI    K + A                     Y  +I G     ++D  Y  L
Sbjct: 238 TAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFL 297

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM  +G PPD +TYN  ++++   +  DEA+++Y  MV S   P++ TYNM++  +F+ 
Sbjct: 298 DEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEM 357

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + +     W EM +R C  D  +Y  +I GL    R+ EA   LEE++ KG+K P   +
Sbjct: 358 DDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVF 417

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           + F   LS  G    + ++++ M+   KF   ++  R+A + K +
Sbjct: 418 DSFLMRLSEVGNLKAIHKVSEHMK---KFYNHSMARRFALSEKRK 459


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 206/399 (51%), Gaps = 28/399 (7%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D  +  VL++    +  ++V+ VL++ R   + A  FF WA   P + H SR Y  M+ I
Sbjct: 96  DSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDI 155

Query: 255 LGRARQFETMVSMLEEM---GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           LGR ++   M  + +E+     + +++   F + +N +A A + ++A+ +F     Y F+
Sbjct: 156 LGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFE 215

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             +     LL +L R K  +EA+ LF + K  F P + ++ ++L GWC   +L +A RVW
Sbjct: 216 LDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVW 275

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--- 428
           NE+I    KPD+  +   +  L K GK S A+KLF  M  KG +P+V     +I +    
Sbjct: 276 NEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFK 335

Query: 429 -----------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                            C+ + A Y  LI  F    RM+ VY+LL +ME +G  P+ +TY
Sbjct: 336 KRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTY 395

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK-VWDEMI 530
           +    ++K  + P + + + + M +SG +    TYN+I+  Y  + +YE G + VWDEM 
Sbjct: 396 SY---ILKTTEKPKDVISLMQRMEKSGCRLDSDTYNLILNLYV-SWDYEKGVQLVWDEME 451

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           R G  PD  S+T+++ GL S D+  EA  Y   M  +GM
Sbjct: 452 RNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGM 490



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 33/308 (10%)

Query: 308 YKFKAGVDTINC-------LLENLGRSKLPKEAQLLFDKLKHRFTPNLTT---YTVLLGG 357
           +K+ AG+   N        +L+ LGR K  +  + LFD++      ++ T   + VLL  
Sbjct: 133 FKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNR 192

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     + EA  ++ +  D GF+ D+V   I+L  L +     +A  LF   K + P P 
Sbjct: 193 YAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP-PV 251

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM--DIVYDLLKEMEERGCPPDGLTYNALI 475
           ++S+ I++  +C + +           + +R+  +I+   LK        PD  TY   I
Sbjct: 252 IKSWNIILNGWCVKGS---------LADAKRVWNEIIASKLK--------PDLFTYGTFI 294

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +        AV+++  M   G  P +   N I+             +++ EM  RGC 
Sbjct: 295 NSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQ 354

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            D  +Y  LI      +R  + Y+ L++M  KG+    + Y+     L    +   +  L
Sbjct: 355 ADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYI---LKTTEKPKDVISL 411

Query: 596 AQKMRFSG 603
            Q+M  SG
Sbjct: 412 MQRMEKSG 419



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY + ++ L ++ +  T V +   M EKG+   +      ++     K   +A+ IF  M
Sbjct: 289 TYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEM 348

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG-------- 356
           N    +A V T N L+++  + +++ K  +LL D      +PN  TY+ +L         
Sbjct: 349 NDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV 408

Query: 357 ---------GWCRVK----NLM---------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
                      CR+     NL+         E G   VW+EM   G  PD  +  IM+ G
Sbjct: 409 ISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHG 468

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           L    K  +A+  +  M+++G +P  R+
Sbjct: 469 LHSHDKLDEALHYYRTMESRGMTPEPRT 496



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 13/173 (7%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  L+  +    ++    D+  + ++ G   D + +  L+  +   K  +EA  ++ + 
Sbjct: 185 MFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQK 244

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            +  F P I ++N+I+  +   G+    ++VW+E+I     PD  +Y   I  L    + 
Sbjct: 245 -KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKL 303

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
             A K    M EKG+   V   N             ++D+L  K R     E+
Sbjct: 304 STAVKLFTSMWEKGINPDVAICN------------CIIDQLCFKKRIPEALEI 344


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 206/399 (51%), Gaps = 28/399 (7%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D  +  VL++    +  ++V+ VL++ R   + A  FF WA   P + H SR Y  M+ I
Sbjct: 76  DSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDI 135

Query: 255 LGRARQFETMVSMLEEM---GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           LGR ++   M  + +E+     + +++   F + +N +A A + ++A+ +F     Y F+
Sbjct: 136 LGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFE 195

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             +     LL +L R K  +EA+ LF + K  F P + ++ ++L GWC   +L +A RVW
Sbjct: 196 LDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVW 255

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--- 428
           NE+I    KPD+  +   +  L K GK S A+KLF  M  KG +P+V     +I +    
Sbjct: 256 NEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFK 315

Query: 429 -----------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                            C+ + A Y  LI  F    RM+ VY+LL +ME +G  P+ +TY
Sbjct: 316 KRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTY 375

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK-VWDEMI 530
           +    ++K  + P + + + + M +SG +    TYN+I+  Y  + +YE G + VWDEM 
Sbjct: 376 SY---ILKTTEKPKDVISLMQRMEKSGCRLDSDTYNLILNLYV-SWDYEKGVQLVWDEME 431

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           R G  PD  S+T+++ GL S D+  EA  Y   M  +GM
Sbjct: 432 RNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGM 470



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 33/308 (10%)

Query: 308 YKFKAGVDTINC-------LLENLGRSKLPKEAQLLFDKLKHRFTPNLTT---YTVLLGG 357
           +K+ AG+   N        +L+ LGR K  +  + LFD++      ++ T   + VLL  
Sbjct: 113 FKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNR 172

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     + EA  ++ +  D GF+ D+V   I+L  L +     +A  LF   K + P P 
Sbjct: 173 YAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP-PV 231

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM--DIVYDLLKEMEERGCPPDGLTYNALI 475
           ++S+ I++  +C + +           + +R+  +I+   LK        PD  TY   I
Sbjct: 232 IKSWNIILNGWCVKGS---------LADAKRVWNEIIASKLK--------PDLFTYGTFI 274

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +        AV+++  M   G  P +   N I+             +++ EM  RGC 
Sbjct: 275 NSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQ 334

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            D  +Y  LI      +R  + Y+ L++M  KG+    + Y+     L    +   +  L
Sbjct: 335 ADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYI---LKTTEKPKDVISL 391

Query: 596 AQKMRFSG 603
            Q+M  SG
Sbjct: 392 MQRMEKSG 399



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY + ++ L ++ +  T V +   M EKG+   +      ++     K   +A+ IF  M
Sbjct: 269 TYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEM 328

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG-------- 356
           N    +A V T N L+++  + +++ K  +LL D      +PN  TY+ +L         
Sbjct: 329 NDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV 388

Query: 357 ---------GWCRVK----NLM---------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
                      CR+     NL+         E G   VW+EM   G  PD  +  IM+ G
Sbjct: 389 ISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHG 448

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           L    K  +A+  +  M+++G +P  R+
Sbjct: 449 LHSHDKLDEALHYYRTMESRGMTPEPRT 476



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 13/173 (7%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  L+  +    ++    D+  + ++ G   D + +  L+  +   K  +EA  ++ + 
Sbjct: 165 MFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQK 224

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            +  F P I ++N+I+  +   G+    ++VW+E+I     PD  +Y   I  L    + 
Sbjct: 225 -KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKL 283

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
             A K    M EKG+   V   N             ++D+L  K R     E+
Sbjct: 284 STAVKLFTSMWEKGINPDVAICN------------CIIDQLCFKKRIPEALEI 324


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 229/476 (48%), Gaps = 56/476 (11%)

Query: 187 VIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR 246
           VI+         EA LD  G  L+  LV DVL R R+  + AFRFF WA  + G+ H + 
Sbjct: 88  VIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAA 147

Query: 247 TYNSMMSILG----RARQFETMVSMLEEMGEK-----------GLLSMETFKIAMNAFAA 291
           TYN ++ IL     +ARQF  +  +L+ M  +           G+L   T K   +    
Sbjct: 148 TYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKL 207

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
           AK+R+          + +     D +N LL+   +  + +EA+++F ++K +   N  TY
Sbjct: 208 AKKRRV---------RMRTPPETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLGNAETY 258

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           ++L  GWCR ++   A +V  EMI     P+   +N  ++     G  S+A  LFE M+ 
Sbjct: 259 SILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRT 318

Query: 412 KGP---SPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRR 448
           +G    SP  ++Y+IMI                       C  + + Y  LI G     +
Sbjct: 319 EGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDK 378

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +D  Y +L EM + G PPD +TYN  +K++   +  D+A+ + + M+ +  +P++HTYNM
Sbjct: 379 LDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNM 438

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +M  +F+    +    +W EM +RGC    ++Y  +I GL    R+ +A   L+E++ +G
Sbjct: 439 LMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRG 498

Query: 569 MKAPVLDYNKFAA---DLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           MK   L Y KF A    LS  G    +  L++ MR   +F    +  R+A T K +
Sbjct: 499 MK---LSYKKFDAIMLRLSAVGNLGAIHRLSEHMR---RFYNVAMSRRFAITQKKK 548


>gi|297851040|ref|XP_002893401.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339243|gb|EFH69660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 500

 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 241/458 (52%), Gaps = 41/458 (8%)

Query: 183 RVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-DKPG 240
           RVC ++  +  S D  + + L      L+H   + V   F  + RP  RFF ++    P 
Sbjct: 48  RVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYSQIHHPD 107

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           F H S T N M++I+G +R  +    + +E+G+ GL++ +TF+I +   A+A+E KK V 
Sbjct: 108 FVHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKHGLVNDKTFRIVLKTLASARELKKCVN 167

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
            F LMN + +   V T+N  +E L + KL +EA+ +  KL+    P+  TY  ++ G+C 
Sbjct: 168 FFHLMNDFGYLYNVQTMNRGVETLCKEKLVEEAKFVVIKLREFIKPDEITYRTMIKGFCD 227

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVR 419
           V +L++A ++WN M+D GF+ D+ A   ++E  LK  +  +A K+F VM +K G   +  
Sbjct: 228 VGDLIKAAKLWNLMMDDGFEVDIEAGKKIMETFLKKNQFDEASKVFHVMVSKRGCDLDGC 287

Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            Y +MI   CK                     +   +  +I G   +RR+   Y  ++ +
Sbjct: 288 FYRVMIDWLCKNGRIDMARKVFDEMRERGVQVDNLTWASIIYGLLVKRRVAEAYKTVEAV 347

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           E     PD   Y+ALIK L+KI++   EA  ++++M++ G +P +HTY M+++ +     
Sbjct: 348 EN----PDISIYHALIKGLVKIKR-ASEATEVFRKMIQRGCEPIMHTYLMLLQGH----- 397

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
             +GR+      R+G  P  N  T+ +GG+I   +  E  KY+E  L++G++    DY+K
Sbjct: 398 --LGRRG-----RKGPDPLVNFDTIFVGGMIKAGKRLETTKYVERTLKRGLEVSRFDYSK 450

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
           F    S     ++ +E+A+K+R    F+++++  R+ E
Sbjct: 451 FLHCYSNEEGVFMFEEMAKKLREVSLFDLADIFQRYGE 488


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 228/465 (49%), Gaps = 54/465 (11%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LD+  ++L+  +V  +L+R ++  + AFRFF WAG +  ++H    YN M+ IL 
Sbjct: 9   DMEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILS 68

Query: 257 ----RARQFETMVSMLEEMGEKG--------LLSM-----ETFKIAMNAFAAAKERKKAV 299
               + +QF  ++ ML+ M            LL +     E +   +  FA   +RK+  
Sbjct: 69  STKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYCERYLTHVQKFA---KRKRI- 124

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
                  + K +  ++  N LL+ L +  L KE + L  +++HR  P+ TT+ VL  GWC
Sbjct: 125 -------RVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWC 177

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SP 416
           RV++  +A ++  EMI  G KP+   +   ++   + G   +A  LFE M  KG    +P
Sbjct: 178 RVRDPKKAMKLLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAP 237

Query: 417 NVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLL 456
             +++ +MI    K + A                     Y  +I G     +++  Y  L
Sbjct: 238 TAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFL 297

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM  +G PPD +TYN  ++++   +  DEA+++Y  MV S   P++ TYNM++  +F+ 
Sbjct: 298 DEMSNKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEM 357

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + +     W EM  R C  D  +Y V+I GL    R+ EA   LEE++ KG+K P   +
Sbjct: 358 DDPDGAFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAF 417

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           + F   LS  G    + +L++ M+   KF   ++  R+A + K +
Sbjct: 418 DSFLMRLSTVGNLKAIHKLSEHMK---KFYNHSMARRFALSEKRK 459


>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
 gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
          Length = 551

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 225/457 (49%), Gaps = 42/457 (9%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG-- 256
           EA LD  G  L+  LV DVL R R+  + AFRFF WA  + G++H S TYN ++ IL   
Sbjct: 96  EAALDALGTELTTPLVADVLHRLRYEEKLAFRFFAWASHQDGYSHESATYNDIIDILSGT 155

Query: 257 --RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK--- 311
             ++RQF  + ++L+ M   G  S+    + +    A  E K    + +L  K + +   
Sbjct: 156 RYKSRQFGVLCNVLDHMKRHGTRSVPVEDL-LEILRAYTE-KHLTHMRKLAKKRRVRLRT 213

Query: 312 -AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               D +N LL+   +  + KEA+ +F ++K R   N  TY++L  GWCR ++  +A +V
Sbjct: 214 PPETDALNVLLDAFCKCGMVKEAEAVFGRVKRRLLGNAETYSILFFGWCRARDPKKAMKV 273

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVRSYTIMIWK 427
             EMI     P+   +   +E     G  S+A +LFE M+ +G    SP  ++Y+IMI  
Sbjct: 274 LEEMIQMKHTPESFTYIAAIESFCSAGLVSEARELFEFMRTEGSTISSPTAKTYSIMIVA 333

Query: 428 F--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                                C  + + Y  LI G     ++D  Y +L+EM   G PPD
Sbjct: 334 LAKADRMEECFELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGRAGFPPD 393

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN  + ++   +  D+A+ + + M+ +  +P++HTYNM+M  +F+ G       +W 
Sbjct: 394 IVTYNCFLNVLCSLRKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMGEAHRALDIWL 453

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLS 584
           EM  RGC    ++Y ++I GL    ++  A   L+E++ + MK   L Y KF A    LS
Sbjct: 454 EMDTRGCQRAIDTYEIMIDGLFDCGKTEHATSLLDEVINRDMK---LSYKKFDAIMLRLS 510

Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
             G    +  L++ MR   +F    +  R+A T K +
Sbjct: 511 AVGDLGAIHRLSEHMR---RFYNVAMSRRFAITQKKK 544


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 212/415 (51%), Gaps = 23/415 (5%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  +  + +++ +  +   ++E  L     N+S +LV  VL+R ++    A RFF WA  
Sbjct: 48  PFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKR 107

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFKIAMNAFAAAKER 295
            PGF  +  +Y+ ++ ILG + QF  +   L E+ E    +++ E F     A++ A   
Sbjct: 108 IPGFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLP 167

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + A+  F  M ++  +AGVD ++ LL  L + K    AQ  FDK+K  F P++ TY++L 
Sbjct: 168 QDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVKTYSILT 227

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GW  V +   A +V++EM ++G   DV+A+N +LE L K GKR +A K+F  M + G  
Sbjct: 228 RGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVD 287

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y+I I   C++                    N   Y C+I      + ++  Y +
Sbjct: 288 PDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQI 347

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM ERG  PD  +YNA+          + A+ + K M R    P  HTYNM++K   +
Sbjct: 348 LDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVR 407

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGM 569
            G ++   +VW+ M +RG  P  ++Y V+I G   +  +  EA KY E M+++G+
Sbjct: 408 VGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGI 462


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 227/461 (49%), Gaps = 38/461 (8%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  +  + +++ +  +   ++E  L+     +S NLV  VL+R ++    A RFF WA  
Sbjct: 45  PGLVNEISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKR 104

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKER 295
            PGF H+  +Y+ +++ILG +RQF  +   L EM E     ++ E   +   +++ A   
Sbjct: 105 IPGFEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLP 164

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             A+  F+ M ++  +  VD ++ LL  L + K  K AQ  FD++KH+F     TY++L+
Sbjct: 165 SDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHKFEAKAKTYSILV 224

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GW  +   +EA +V++EM  +G   DV+A+N +LE L K G   +A K+F  + + G  
Sbjct: 225 RGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVE 284

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  SY I I  +C+                     N   Y C+I       +++  Y L
Sbjct: 285 PDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQL 344

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM ERG  PD  +YN ++         + A ++   MV+    P  H+YNM++K   +
Sbjct: 345 LHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVR 404

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMKA--- 571
            G ++   ++W+ M  RG  P  ++Y+V+I GL  +  +  EA +Y E M+++G+     
Sbjct: 405 VGRFDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYAS 464

Query: 572 ------------PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
                        +LD+ +  A     G S  + ELA++MR
Sbjct: 465 TIEMLRNRLIGFGLLDHIEILACKMERGTSCSIQELAKEMR 505


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 205/399 (51%), Gaps = 28/399 (7%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D  +  VL++    +  ++V+ VL++ R   + A  FF WA   P + H SR Y  M+ I
Sbjct: 96  DSELAEVLNQFSDEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDI 155

Query: 255 LGRARQFETMVSMLEEM---GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           LGR ++   M  + +E+     + +++   F + +N +A A + ++A+ +F     Y F+
Sbjct: 156 LGRMKKVRLMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFE 215

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             +     LL +L R K  +EA+ LF + K  F P + ++ ++L GWC   +L +A RVW
Sbjct: 216 LDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVW 275

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--- 428
           NE+I    KPD+  +   +  L K GK S A+KLF  M  KG +P+V     +I +    
Sbjct: 276 NEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFK 335

Query: 429 -----------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                            C+ + A Y  LI  F    RM+ VY+LL +ME +G  P+ +TY
Sbjct: 336 KRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTY 395

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK-VWDEMI 530
           +    ++K  + P + + + + M +SG +    TYN+I+  Y  + +YE G + VWDEM 
Sbjct: 396 SY---ILKTTEKPKDVISLMQRMEKSGCRLDSDTYNLILNLYV-SWDYEKGVQLVWDEME 451

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           R G  PD  S+T+++ GL S  +  EA  Y   M  +GM
Sbjct: 452 RNGSGPDQRSFTIMVHGLHSHGKLDEALHYYRTMESRGM 490



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 33/308 (10%)

Query: 308 YKFKAGVDTINC-------LLENLGRSKLPKEAQLLFDKLKHRFTPNLTT---YTVLLGG 357
           +K+ AG+   N        +L+ LGR K  +  + LFD++      ++ T   + VLL  
Sbjct: 133 FKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPMESRQSVITNRMFAVLLNR 192

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     + EA  ++ +  D GF+ D+V   I+L  L +     +A  LF   K + P P 
Sbjct: 193 YAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFP-PV 251

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM--DIVYDLLKEMEERGCPPDGLTYNALI 475
           ++S+ I++  +C + +           + +R+  +I+   LK        PD  TY   I
Sbjct: 252 IKSWNIILNGWCVKGS---------LADAKRVWNEIIASKLK--------PDLFTYGTFI 294

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +        AV+++  M   G  P +   N I+             +++ EM  RGC 
Sbjct: 295 NSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQ 354

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            D  +Y  LI      +R  + Y+ L++M  KG+    + Y+     L    +   +  L
Sbjct: 355 ADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYI---LKTTEKPKDVISL 411

Query: 596 AQKMRFSG 603
            Q+M  SG
Sbjct: 412 MQRMEKSG 419



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY + ++ L ++ +  T V +   M EKG+   +      ++     K   +A+ IF  M
Sbjct: 289 TYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEM 348

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG-------- 356
           N    +A V T N L+++  + +++ K  +LL D      +PN  TY+ +L         
Sbjct: 349 NDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDV 408

Query: 357 ---------GWCRVK----NLM---------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
                      CR+     NL+         E G   VW+EM   G  PD  +  IM+ G
Sbjct: 409 ISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHG 468

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           L   GK  +A+  +  M+++G +P  R+
Sbjct: 469 LHSHGKLDEALHYYRTMESRGMTPEPRT 496


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 212/415 (51%), Gaps = 23/415 (5%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  +  + +++ +  +   ++E  L     N+S +LV  VL+R ++    A RFF WA  
Sbjct: 48  PFLVSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKR 107

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFKIAMNAFAAAKER 295
            PGF  +  +Y+ ++ ILG + QF  +   L E+ E    +++ E F     A++ A   
Sbjct: 108 IPGFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLP 167

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + A+  F  M ++  +AGVD ++ LL  L + K    AQ  FDK+K  F P++ TY++L 
Sbjct: 168 QDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVKTYSILT 227

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GW  V +   A +V++EM ++G   DV+A+N +LE L K GKR +A K+F  M + G  
Sbjct: 228 RGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVD 287

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y+I I   C++                    N   Y C+I      + ++  Y +
Sbjct: 288 PDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQI 347

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM ERG  PD  +YNA+          + A+ + K M R    P  HTYNM++K   +
Sbjct: 348 LDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVR 407

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGM 569
            G ++   +VW+ M +RG  P  ++Y V+I G   +  +  EA KY E M+++G+
Sbjct: 408 VGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGI 462


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 224/461 (48%), Gaps = 46/461 (9%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           NME  L + GI LS  LV   L R R+  + A RFF WAG +  ++H    YN MM IL 
Sbjct: 9   NMENALGQLGIPLSTPLVTGGLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILS 68

Query: 257 RAR----QFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAK-------ERKKAVAIFE 303
             R    QF  +  +LE M    + ++  E   + +  +            +KK + +  
Sbjct: 69  STRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKYTEKYLTHMQKFAKKKRIRV-- 126

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
                K +  ++  N LL+ L +  L ++A+ L+ K++    PN  TY +L+ GWCRV+N
Sbjct: 127 -----KTQLEINAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVRN 181

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVRS 420
                ++  EMI+ G +PD   +N  ++   K G  ++A+ LFE M+ KG    SP  ++
Sbjct: 182 PTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKT 241

Query: 421 YTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y I+I                       C  +   Y  +I G     ++D  Y  L+EM 
Sbjct: 242 YAIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMG 301

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +   PD +TYN  +K++   K  ++A+++Y  M+     P++ TYNM++  +F+  + +
Sbjct: 302 NKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPD 361

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              + W E+  RGC PD ++Y V+I GL + ++  +A   LEE++ +G+K P   ++ F 
Sbjct: 362 GAFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSFL 421

Query: 581 ADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
             LS  G    +  L++ M+   KF    +  R+A + K +
Sbjct: 422 MQLSVIGDLQAIHRLSEHMK---KFYNHGMARRFALSQKRK 459


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 209/413 (50%), Gaps = 23/413 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E++ +++    S    +E  L+E GI+L   L+V VL R   A    +RFF WA  +P
Sbjct: 69  DVEKIYRILRNYHSRVPKLELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLWATKQP 128

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G+ H+     SM+ IL + RQF  +  ++EEM ++   L+  E F + +  FA+A   KK
Sbjct: 129 GYCHSYEVCKSMVKILSKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKK 188

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M KY F+       CLL+ L ++   K+A  +F+ ++ +  PNL  +T LL G
Sbjct: 189 AVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFTSLLYG 248

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR   LMEA  V  +M + G +PD+V    +L G    GK +DA  L   M+ +G  PN
Sbjct: 249 WCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPN 308

Query: 418 VRSYTIMIWKFCK---------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
              YT++I   C+                      +   YT LI+GF     +D  Y +L
Sbjct: 309 ANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVL 368

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +M ++G  P  +TY  ++   + ++  +E + + ++M + G  P +  YN++++     
Sbjct: 369 DDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNF 428

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +   ++W+EM   G  P  + + ++I G  SQ    EA  + +EM+ +G+
Sbjct: 429 REVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGI 481



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 22/248 (8%)

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           + VL+  +     + +A  V +EM   GF+PD      +L+ L K G   DA K+FE M+
Sbjct: 173 FVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMR 232

Query: 411 AKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMD 450
            K P PN+R +T +++ +C++                    +  V+T L++G+ +  +M 
Sbjct: 233 EKIP-PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMA 291

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
             YDLL +M +RG  P+   Y  LI+ L + +K  DEA+R++ EM R G +  I TY  +
Sbjct: 292 DAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTAL 351

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + + G  + G  V D+M ++G  P   +Y  ++     +++  E  + +E+M + G 
Sbjct: 352 ISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGC 411

Query: 570 KAPVLDYN 577
              +L YN
Sbjct: 412 HPDLLIYN 419


>gi|226495005|ref|NP_001148062.1| GTP binding protein [Zea mays]
 gi|195615570|gb|ACG29615.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/411 (30%), Positives = 216/411 (52%), Gaps = 28/411 (6%)

Query: 183 RVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFA 242
           +V  V+    + + ++  VL +  +++  ++++ VL++ R   + A  FF WA   PG+A
Sbjct: 82  QVLNVLKSTSADNADLSGVLHQFMVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYA 141

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGE---KGLLSMETFKIAMNAFAAAKERKKAV 299
           H SR Y  M+ ILGR ++   M  + +E+ E   + +++ + F + +N +A A + ++A+
Sbjct: 142 HGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAI 201

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
            +F L   Y F+  +     LL +L R K  +EA+ LF + K  F     ++ ++L GWC
Sbjct: 202 EVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWC 261

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
              +L +A R+WN++I    + D+      +  L K G+ S A+KLF+ M  KG +P+V 
Sbjct: 262 VKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVA 321

Query: 420 SYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
               +I                     + C+ + A Y  LI      +RM+ VY+LL +M
Sbjct: 322 ICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDM 381

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           E +GC P+  TY+    ++K  + P + + + + M RSG K     YN+I+  Y +   Y
Sbjct: 382 EAKGCSPNNRTYSY---ILKTTEKPKDVIALMQRMERSGCKLDSDMYNLILNLYIK-WKY 437

Query: 520 EMG-RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           E G +++WDEM RRG  PD  S+T+++ GL SQ +  EA +Y   M  +GM
Sbjct: 438 EKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGM 488



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 34/208 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+ + ++ L +  +    V + ++M EKG+   +      ++     K+  +A+ IF  M
Sbjct: 287 TFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCIIDQLCFKKKIPEALEIFGEM 346

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           N    +A V T N L++ + + K + K  +LL D      +PN  TY+ +L    + K++
Sbjct: 347 NDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCSPNNRTYSYILKTTEKPKDV 406

Query: 365 M------------------------------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
           +                              E G  ++W+EM  +G  PD  +  IM+ G
Sbjct: 407 IALMQRMERSGCKLDSDMYNLILNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHG 466

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           L   GK  +A++ +  MK++G  P  R+
Sbjct: 467 LHSQGKLDEALQYYTTMKSRGMIPEPRT 494


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 212/412 (51%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+  +++ +  S    +E  L+E G+ L   L+  VL R   A    +RFF WA  +P
Sbjct: 83  DVEKAYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQP 142

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
            + H+   Y SM+ IL + RQF  +  ++EEM ++   L+  E F + +  FA+A   KK
Sbjct: 143 RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK 202

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ + + M  +  +       CLL+ L +    K+A  LF+ ++ RF  NL  +T LL G
Sbjct: 203 AIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLRFPVNLRYFTSLLYG 262

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR + +MEA  V  +M + GF+PD+V +  +L G    GK +DA  L + M+ +G  PN
Sbjct: 263 WCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPN 322

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
              YT++I   CK                     +   YT L++GF    ++D  Y +L 
Sbjct: 323 ATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLD 382

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M ++G  P  LTY  ++   + ++   E + + ++M +  + P I  YN++++   + G
Sbjct: 383 DMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLG 442

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +   ++W+EM   G  P  +++ ++I GL SQ    EA  + +EM+ +G+
Sbjct: 443 EVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGL 494


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 214/410 (52%), Gaps = 28/410 (6%)

Query: 184 VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAH 243
           V KV+    + + ++   L    +++  ++++ VL++ R   + A  FF WA   PG+AH
Sbjct: 91  VLKVLKSTSADNADLSDALRRFAVHMDEDIILTVLQKQRSNWQVALAFFNWAATLPGYAH 150

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG---LLSMETFKIAMNAFAAAKERKKAVA 300
            SR Y  M+ ILGR ++   M  + +E+ E+    +++ + F + +N +A A + ++A+ 
Sbjct: 151 GSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGAHKVQEAIE 210

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           +F L   Y F+  +     LL +L R K  +EA+ LF + K  F     ++ ++L GWC 
Sbjct: 211 VFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCV 270

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             +L +A R+WN++I    + D+  +   +  L K G+ S A+KLF+ M   G +P+V  
Sbjct: 271 KGSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGRISAAVKLFKKMWETGINPDVAI 330

Query: 421 YTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEME 460
              +I + C +N                     A Y  LI     ++RM+ VY+LL +ME
Sbjct: 331 CNCIIDQLCFKNRIPEALEIFGEMNDRLCQADVATYNTLIKYLCKKKRMEKVYELLDDME 390

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +GC P+  TY+    ++K  + P + + + + M ++G +    TYN+I+  Y     YE
Sbjct: 391 AKGCSPNNRTYSY---VLKTTEKPKDVIALMQRMEQTGCELDSDTYNLILNLY-TNWKYE 446

Query: 521 MG-RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            G ++VWDEM R G  PD  S+T+++ GL SQ +  EA +Y   M  +GM
Sbjct: 447 KGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGM 496



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 34/222 (15%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY + ++ L +  +    V + ++M E G+   +      ++         +A+ IF  M
Sbjct: 295 TYGTFINALAKNGRISAAVKLFKKMWETGINPDVAICNCIIDQLCFKNRIPEALEIFGEM 354

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           N    +A V T N L++ L + K + K  +LL D      +PN  TY+ +L    + K++
Sbjct: 355 NDRLCQADVATYNTLIKYLCKKKRMEKVYELLDDMEAKGCSPNNRTYSYVLKTTEKPKDV 414

Query: 365 M------------------------------EAG--RVWNEMIDKGFKPDVVAHNIMLEG 392
           +                              E G  +VW+EM   G  PD  +  IM+ G
Sbjct: 415 IALMQRMEQTGCELDSDTYNLILNLYTNWKYEKGVQQVWDEMERNGSGPDQRSFTIMVHG 474

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           L   GK  +A++ +  MK++G  P  R+  ++     K++ A
Sbjct: 475 LHSQGKLDEALQYYTTMKSRGMIPEPRTKILVKAMHMKKDGA 516



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 54/287 (18%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTT---YTVLLGGWCRVKNLMEAGRVWNEMID 376
           +L+ LGR K  +  + LFD++       + T   + VLL  +     + EA  V+    D
Sbjct: 158 MLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKD 217

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
            GF+ D+V   I+L  L +     +A  LF   K + P    +S+ I++  +C +     
Sbjct: 218 YGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVT-KSWNIILNGWCVK----- 271

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                  G+ R                                      +A RI+ +++ 
Sbjct: 272 -------GSLR--------------------------------------DAQRIWNDIIA 286

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
           S  +  + TY   + +  + G      K++ +M   G  PD      +I  L  ++R  E
Sbjct: 287 SKVERDLFTYGTFINALAKNGRISAAVKLFKKMWETGINPDVAICNCIIDQLCFKNRIPE 346

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A +   EM ++  +A V  YN     L +  R   + EL   M   G
Sbjct: 347 ALEIFGEMNDRLCQADVATYNTLIKYLCKKKRMEKVYELLDDMEAKG 393


>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 219/457 (47%), Gaps = 42/457 (9%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG-- 256
           EA LD  G  L+  LV DVL R R+  + AFRFF WA  + G++H   TYN ++ IL   
Sbjct: 96  EAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYSHEPTTYNDIIDILSGT 155

Query: 257 --RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK--- 311
             ++RQF  + ++L+ M   G  S+      +     A   K    + +L  K + +   
Sbjct: 156 RYKSRQFGVLCNVLDHMKRHGSRSVPV--EGLLEILRAYTEKHLTHMRKLAKKRRVRMRT 213

Query: 312 -AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               D +N LL+   +  + KEA+ +F ++K +   N  TY+ L  GWCR ++  +A +V
Sbjct: 214 PPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKV 273

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---PSPNVRSYTIMIWK 427
             EMI     P+   +   +E     G  S+A +LFE M+ +G    SP  ++Y+IMI  
Sbjct: 274 LEEMIQMKHTPESFTYVAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYSIMIVA 333

Query: 428 F--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                                C  +   Y  LI G     R+D  Y +L EM   G PPD
Sbjct: 334 LAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPD 393

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN  + ++   +  D+A+ + + M+ +  +P++HTYNM+M  +F+ G       +W 
Sbjct: 394 IVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWL 453

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLS 584
           EM +RGC    ++Y ++I GL     +  A   L+E++ + MK   L Y KF A    LS
Sbjct: 454 EMDKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMK---LSYKKFDAIMLRLS 510

Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
             G    +  L++ MR   KF    +  R+A T K +
Sbjct: 511 AVGNLGAIHRLSEHMR---KFYNVAMSRRFAITQKKK 544


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 216/403 (53%), Gaps = 21/403 (5%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           + +S +LV + L++  +A   A  FF WA  + GF +++ +Y++++  LG+ +QF  + +
Sbjct: 1   MEVSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWN 60

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           ++ +M +KGLL+ ETF +    +A A++ K+AV  F  M K+  K     +N LL+ L +
Sbjct: 61  LVTDMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCK 120

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           S+  + AQL+FDK+  R F  ++ +YT+LL GW + KNL     V+NEM D+GF+PDVV 
Sbjct: 121 SRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVT 180

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPNVR-------------SYTIMIWKFCK 430
           + I++    K  +  DAI+LF  M+AK   PSP++              S  +  ++  K
Sbjct: 181 YGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSK 240

Query: 431 QN-----AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
            +     A  Y  ++  +    RMD V   + EM + G  P   TY+ ++  +       
Sbjct: 241 ASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTK 300

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            A  ++++M   G +P++ TY +I++ +      +M  KVWD+M  +G  P  + ++ LI
Sbjct: 301 IAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLI 360

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             L  + +  EA  Y +EML+ G++ P   ++    +L   G+
Sbjct: 361 NSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGK 403



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 135/307 (43%), Gaps = 16/307 (5%)

Query: 298 AVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A++ F    K K F+   ++ + L+E+LG+ K       L   +K +   N  T+ ++  
Sbjct: 22  ALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVTDMKQKGLLNKETFALISR 81

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            + R + + EA   + +M   G K +    N +L+ L K  +   A  +F+ M  +G   
Sbjct: 82  RYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKMNKRGFVA 141

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +++SYTI               L+ G+G  + +  + ++  EM++ G  PD +TY  LI 
Sbjct: 142 DIKSYTI---------------LLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILIN 186

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
                +  D+A+ ++ EM     KP+ H Y  ++             + ++     G  P
Sbjct: 187 AHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVP 246

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +Y  ++G     +R  +  + ++EM + G+      Y+     L RAG++ +   + 
Sbjct: 247 EAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVF 306

Query: 597 QKMRFSG 603
           QKM   G
Sbjct: 307 QKMSCEG 313



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 3/170 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF   + TYN+++     + + + +   ++EM + G+  S  T+ I ++    A + K A
Sbjct: 243 GFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIA 302

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            ++F+ M+    +  V T   ++           A  ++D++K +   P +  ++ L+  
Sbjct: 303 YSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINS 362

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
            C    L EA   + EM+D G +P     + + + LL  GK+ D + +FE
Sbjct: 363 LCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKK-DTVVVFE 411


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 225/458 (49%), Gaps = 59/458 (12%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           E +C+++    + +  ++  L    + +S  LVV VL +  +A   A  FF WA  + GF
Sbjct: 59  ETICRILST--TPESPVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGF 116

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI 301
            HN+  +++++  LG+ RQF+ + ++++EM ++ LL+ +TF +    +  AK  K+A+  
Sbjct: 117 NHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKT 176

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKE-AQLLFDKLKH-RFTPNLTTYTVLLGGWC 359
           FE M KY  K  +   N L++ L +SK   E AQ LFDK++     PNL +YT+L+ GW 
Sbjct: 177 FERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWS 236

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPN 417
           + +NL++   V  EM D GF+PDVV + I++    K  K  +AI ++  M +K   PSP+
Sbjct: 237 QQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPH 296

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           +                 Y   ITG GN  RMD  ++  ++ +  G PP+  TYNA++  
Sbjct: 297 I-----------------YCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSA 339

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM------------KSYFQ-----TG--- 517
                  D+A RI  EM   G  P   TY++I+             S FQ     TG   
Sbjct: 340 YCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEP 399

Query: 518 ----------------NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
                             +M   VW+EM  +G  P  + ++ LI  L  +++  +A +Y 
Sbjct: 400 SVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYF 459

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           ++ML+ G++     ++ F   L  AG    +   A+K+
Sbjct: 460 QQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKV 497


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 213/449 (47%), Gaps = 23/449 (5%)

Query: 174 STADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFC 233
           S +  + I  + +++ +      ++E  L      ++  LV  VL+R ++    A RFF 
Sbjct: 43  SLSSSQYINEISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHRFFL 102

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM--ETFKIAMNAFAA 291
           WA   PGF H+  +Y+ ++ ILG ++QF  +   L +M E     +  E F +   A+  
Sbjct: 103 WAKRLPGFEHSKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCR 162

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
           A     A+  F  M  +  KAGV  ++ LL  L + K  K+AQ  FDK+     PN  TY
Sbjct: 163 ANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTY 222

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           ++L+ GW  V +  EA +++ EM ++G   DVVA+N +LE L K G   +A KLF  M +
Sbjct: 223 SILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGS 282

Query: 412 KGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDI 451
            G +P+  SY+I I  +C+                     N   Y C++       ++D 
Sbjct: 283 NGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDE 342

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            Y LL EM ERG  PD  +YNA+          ++A+R+   M +    P  HTYNM++K
Sbjct: 343 AYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLK 402

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMK 570
              + G ++    VW  M  RG  P  ++Y V++ G   +  +  EA KY E M++ G+ 
Sbjct: 403 MLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIP 462

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKM 599
                       +   G S  +D LA KM
Sbjct: 463 PYSCTVELLRNRVIGLGFSEQIDVLAGKM 491


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 215/414 (51%), Gaps = 22/414 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+V +++ +  S    +E  L E G+ +   L   VL R   A   A+RF+ WA  + 
Sbjct: 65  DVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQS 124

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G   +   Y +M+ +L R RQF  + +++EEM ++   L++ + F I M  FA+A+   K
Sbjct: 125 GHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHK 184

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M  Y  +       CLL+ L ++   KEA  LF++L++R+ P++  +T LL G
Sbjct: 185 AVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLYG 244

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WC+   LMEA  V  +M D G +PD+V +N +L G  +  K  DA  L + M+ KG  PN
Sbjct: 245 WCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPN 304

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             SYT++I   CK                     +   Y+ LI+GF    ++   Y+LL 
Sbjct: 305 ATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLD 364

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM ++G  P+ + Y  ++   + ++  +E   +  EM + G  P +  YN +++   + G
Sbjct: 365 EMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLG 424

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
             + G ++W+EM   G  P  +++ ++I G + Q    EA +Y +EM+ +G+ A
Sbjct: 425 EVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFA 478



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 38/216 (17%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE- 493
           V+  L+  F + R +     +L EM   GC PD   +  L+  ++      EA  +++E 
Sbjct: 168 VFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEEL 227

Query: 494 ---------------------------------MVRSGFKPTIHTYNMIMKSYFQTGNYE 520
                                            M  +G +P I  YN ++  Y Q     
Sbjct: 228 RYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMG 287

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +  EM R+GC P+  SYTVLI  L   +R  EA +   EM   G +A ++ Y+   
Sbjct: 288 DAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLI 347

Query: 581 ADLSRAG---RSY-VLDELAQKMRFSGKFEVSNVLA 612
           +   + G   R Y +LDE+ Q+  F  +    +++ 
Sbjct: 348 SGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMV 383


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 231/473 (48%), Gaps = 39/473 (8%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           K+   P  +  + +++ +  +   ++E  L     ++S  LV  VL+R ++    A RFF
Sbjct: 36  KNLPSPDLVNEISRILSDHRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFF 95

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFA 290
            WA   PGF H+  +Y+ ++ ILG ++QF  +   L E+ E     +S + F +   A++
Sbjct: 96  LWAKRIPGFDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYS 155

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT 350
            A     A+  F+ M ++  K  +D ++ LL  L + K  K AQ +FD++KH+F     T
Sbjct: 156 RANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAKT 215

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y++L+ GW  +   + A +V++EM ++    DV+A+N +LE   K GK S+A K+F  M 
Sbjct: 216 YSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMG 275

Query: 411 AKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMD 450
           + G  P+  +++I I  +C+                     N   Y C+I     + +++
Sbjct: 276 SNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVE 335

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             Y LL E+ ER   PD  +YNA++         + A R+   MV+    P  H+YNM++
Sbjct: 336 EAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLL 395

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGM 569
           K   + G ++   +VW+ M  +G  P  ++Y+V++ GL  +  +  EA KY E M+++G+
Sbjct: 396 KLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGI 455

Query: 570 KA---------------PVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
                             +LDY +  A       +  + ELA  MR  GK  V
Sbjct: 456 PPYSSTVEILRNRLIGLGLLDYIEILAGKMEHSTACSIQELAIAMR-GGKVHV 507


>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 218/457 (47%), Gaps = 42/457 (9%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG-- 256
           EA LD  G  L+  LV DVL R  +  + AFRFF WA  + G++H   TYN ++ IL   
Sbjct: 96  EAALDALGAELTTPLVADVLHRLLYEEKLAFRFFAWASQQDGYSHEPTTYNDIIDILSGT 155

Query: 257 --RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK--- 311
             ++RQF  + ++L+ M   G  S+      +     A   K    + +L  K + +   
Sbjct: 156 RYKSRQFGVLCNVLDHMKRHGSRSVPV--EGLLEILRAYTEKHLTHMRKLAKKRRVRMRT 213

Query: 312 -AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               D +N LL+   +  + KEA+ +F ++K +   N  TY+ L  GWCR ++  +A +V
Sbjct: 214 PPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKV 273

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---PSPNVRSYTIMIWK 427
             EMI     P+   +   +E     G  S+A +LFE M+ +G    SP  ++Y+IMI  
Sbjct: 274 LEEMIQMKHTPESFTYVAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYSIMIVA 333

Query: 428 F--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                                C  +   Y  LI G     R+D  Y +L EM   G PPD
Sbjct: 334 LAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPD 393

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN  + ++   +  D+A+ + + M+ +  +P++HTYNM+M  +F+ G       +W 
Sbjct: 394 IVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWL 453

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLS 584
           EM +RGC    ++Y ++I GL     +  A   L+E++ + MK   L Y KF A    LS
Sbjct: 454 EMDKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMK---LSYKKFDAIMLRLS 510

Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
             G    +  L++ MR   KF    +  R+A T K +
Sbjct: 511 AVGNLGAIHRLSEHMR---KFYNVAMSRRFAITQKKK 544


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 203/400 (50%), Gaps = 30/400 (7%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA----GDKPGFAHNSRTYNSMM 252
           ++E  L  C + L+ + V+ VL R R    PAF FF W      ++  F   S  YN ++
Sbjct: 109 DIERALSLCDLVLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVIYNEIL 168

Query: 253 SILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
            ILG+ R+FE +  +L EM + K L++ ET+ + +N +AAA + ++A++IF    ++  +
Sbjct: 169 VILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLE 228

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             +     LL  L R K  + A+ LF   KH F  ++ T  ++L GWC + N+ EA R W
Sbjct: 229 MNLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVTDIKTSNIILNGWCVLGNVHEAKRFW 288

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV------------- 418
            E+I+   +PD+  +  ++  L K GK   A+KLF  M  +G + +V             
Sbjct: 289 REIIESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFK 348

Query: 419 -------RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPDGL 469
                    +  M  + C  N A Y  LI      RRM+ V +LL EMEER   C P+ +
Sbjct: 349 KRIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCWPNSV 408

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           T+   I L+   + P+E   +++ M RSG K T   YN+I++ Y      E  +  W+EM
Sbjct: 409 TF---IYLLGSVRGPEEVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQERVKSTWNEM 465

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              G  PD  SYT++I GL  + R+ +  +Y  EM  KG+
Sbjct: 466 KEMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGI 505



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 36/210 (17%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TY ++++ L +  +  T + +   M E+GL + +      ++A    K   +A+ IF+ M
Sbjct: 302 TYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFKKRIPEALEIFKEM 361

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGW---- 358
           N+    A V T N L+++L + +  ++   L ++++ R     PN  T+  LLG      
Sbjct: 362 NERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCWPNSVTFIYLLGSVRGPE 421

Query: 359 -------------CR----VKNLM-----------EAGRVWNEMIDKGFKPDVVAHNIML 390
                        C+    + NL+                WNEM + G  PD  ++ IM+
Sbjct: 422 EVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQERVKSTWNEMKEMGLGPDRRSYTIMI 481

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            GL + G+  D ++ F  M  KG  P  ++
Sbjct: 482 HGLYEKGRTKDGLRYFNEMTLKGIMPEPKT 511



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 20/261 (7%)

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           + +FTP    Y  +L    + +   E  +V  EM  +    +   ++++L       K  
Sbjct: 154 EEKFTPGSVIYNEILVILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVE 213

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFC--KQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
           +AI +F   +  G   N+ ++  ++   C  K   A  T       + ++ + V D+   
Sbjct: 214 EAISIFYRRQEFGLEMNLIAFQSLLMWLCRYKHVEAAETLF-----HSKKHEFVTDIK-- 266

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
                      T N ++    +     EA R ++E++ S  +P I+TY  ++ S  + G 
Sbjct: 267 -----------TSNIILNGWCVLGNVHEAKRFWREIIESKCEPDIYTYGTLINSLTKKGK 315

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                K++  M  RG   D      +I  L  + R  EA +  +EM E+G  A V  YN 
Sbjct: 316 LGTALKLFRAMWERGLTTDVVICNCIIDALCFKKRIPEALEIFKEMNERGCAANVATYNT 375

Query: 579 FAADLSRAGRSYVLDELAQKM 599
               L +  R   ++EL  +M
Sbjct: 376 LIKHLCKIRRMEKVNELLNEM 396


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 214/412 (51%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+V +++ +  S    +E  L E G+ +   L   VL R   A   A+RF+ WA  + 
Sbjct: 91  DVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQS 150

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G   +   Y +M+ +L R RQF  + +++EEM ++   L++ + F I M  FA+A+   K
Sbjct: 151 GHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHK 210

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV + + M KY  +       CLL+ L ++   KEA  LF+ +++R+ P++  +T LL G
Sbjct: 211 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFTSLLYG 270

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WC+   LMEA  V  +M D G +PD+V +N +L G  + GK  DA  L + M+ K   PN
Sbjct: 271 WCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPN 330

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             SYT++I   CK                     +   Y+ LI+GF    ++   Y+LL 
Sbjct: 331 ATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLD 390

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM ++G  P+ + Y  ++   + ++  +E   +  EM + G  P +  YN +++   + G
Sbjct: 391 EMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLG 450

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             + G ++W+EM   G  P  +++ ++I G + Q    EA +Y +EM+ +G+
Sbjct: 451 EVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGL 502



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 38/215 (17%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL----------------M 478
           V+  L+  F + R +    ++L EM + GC PD   +  L+                  M
Sbjct: 194 VFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM 253

Query: 479 KIQKMPD------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           + +  P                   EA  +  +M   G +P I  YN ++  Y Q G   
Sbjct: 254 RYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMG 313

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +  EM R+ C P+  SYTVLI  L   +R  EA +   EM   G +A V+ Y+   
Sbjct: 314 DAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLI 373

Query: 581 ADLSRAG---RSY-VLDELAQKMRFSGKFEVSNVL 611
           +   + G   R Y +LDE+ Q+  F  +    +++
Sbjct: 374 SGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIM 408


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 206/406 (50%), Gaps = 31/406 (7%)

Query: 192 FSLDRNMEAV---LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP-GFAHNSRT 247
           F  D+  E +   LD+CG +L+H+LV+DVL R R   RPA  FF WA     G+  +S  
Sbjct: 45  FRRDKPTEQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNWASKTTTGYQPSSDV 104

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            N ++ ILG+ ++F+ +  +L+EM ++  LL    F   +  F  A +  +A+ +F    
Sbjct: 105 CNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDEAIQLFYRRK 164

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           ++  +   +    LL  L R K  ++A+ LF + +K     ++  + V+L GWC + N  
Sbjct: 165 EFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSH 224

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV------- 418
           EA RVW +++    KPD+  +   ++ L K GK   A+KLF  M  KG  P+V       
Sbjct: 225 EAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCII 284

Query: 419 -------------RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--G 463
                          +  M  + C+ N A Y  LI      +RM  VY+L+ EME +   
Sbjct: 285 DALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVDEMERKKGS 344

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P+ +TY  L+K +K    P E  R+ + M R+G       YNM+++ Y +  + +  R
Sbjct: 345 CLPNAVTYCYLLKSLK---EPGEVCRVLERMERNGCGMNDDVYNMVLRLYMKWDDGDGVR 401

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           K W+EM R G  PD  SYT++I     + R  +A +YLEEM+ KGM
Sbjct: 402 KTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEEMISKGM 447



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 65/146 (44%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           + AV+  L+  F    ++D    L    +E G   +   +  L+  +   K  ++A  ++
Sbjct: 136 DEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALF 195

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
              V+ G +  I  +N+I+  +   GN    ++VW +++   C PD  +Y   I  L  +
Sbjct: 196 HNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKK 255

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYN 577
            + G A K    M +KG K  V+  N
Sbjct: 256 GKLGTALKLFRGMWDKGGKPDVVICN 281



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 21/244 (8%)

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +++   E  +V +EM  +    D      ++   +   K  +AI+LF   K  G   N  
Sbjct: 114 KMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSE 173

Query: 420 SY-TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
           ++ T+++W  C+                + ++    L     ++G   D   +N ++   
Sbjct: 174 AFRTLLMW-LCRY---------------KHVEDAEALFHNSVKKGLRADIKMWNVILNGW 217

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            +     EA R+++++V S  KP I TY   +K+  + G      K++  M  +G  PD 
Sbjct: 218 CVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPDV 277

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN---KFAADLSRAGRSY-VLDE 594
                +I  L  + R  EA +   +M E+G +  V  YN   K+   + R  + Y ++DE
Sbjct: 278 VICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVDE 337

Query: 595 LAQK 598
           + +K
Sbjct: 338 MERK 341



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 36/210 (17%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY + +  L +  +  T + +   M +KG    +      ++A    K   +A+ IF  M
Sbjct: 244 TYATFIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDM 303

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLL------G 356
           ++   +  V T N L++ + + +  K+   L D+++ +     PN  TY  LL      G
Sbjct: 304 SERGCEPNVATYNSLIKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSLKEPG 363

Query: 357 GWCRVKNLMEAG--------------------------RVWNEMIDKGFKPDVVAHNIML 390
             CRV   ME                            + W EM   G+ PD  ++ IM+
Sbjct: 364 EVCRVLERMERNGCGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMI 423

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
               + G+  DA++  E M +KG  P  R+
Sbjct: 424 HENFEKGRVKDAVRYLEEMISKGMVPERRT 453


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 231/466 (49%), Gaps = 39/466 (8%)

Query: 129 LATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVI 188
            +T+I DS  V +   +   DD  D D  C  ++   E+ S          ++ ++ K++
Sbjct: 17  FSTSIADSEQVGFTRSNIEKDDESDIDLGCSISD---ELVS---------EDVGKISKLV 64

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
            +  S  + +   L+EC +  S+ LVV++L R R+    AF FF WAG + G+  + R Y
Sbjct: 65  KDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREY 124

Query: 249 NSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +SM+SILG+ R+F+T  ++++EM +    L++ +T  I +  + A  +  KA+  F    
Sbjct: 125 HSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYK 184

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLM 365
           ++K + G+D    LL  L R K   +A  L    K ++  +  ++ ++L GWC V  +  
Sbjct: 185 RFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPR 244

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA RVW EM + G K DVV+++ M+    K G  +  +KLF+ MK +   P+ + Y  ++
Sbjct: 245 EAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVV 304

Query: 426 WKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
               K                      N   Y  LI      R+ +    +  EM E+G 
Sbjct: 305 HALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGL 364

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P   TY+A    M+I +  +E   +  +M + G +PT+ TY M+++   +  +++    
Sbjct: 365 FPTIRTYHAF---MRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLL 421

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           +WDEM  +   PD +SY V+I GL    +  EAY Y +EM +KGM+
Sbjct: 422 LWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMR 467



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 150/327 (45%), Gaps = 33/327 (10%)

Query: 204 ECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMS----ILGRAR 259
           E GI+   +L+   L R+++        FC   +K  +  +++++N +++    ++G  R
Sbjct: 189 EMGIDDFQSLL-SALCRYKNVSDAGHLIFC---NKDKYPFDAKSFNIVLNGWCNVIGSPR 244

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + E    +  EMG  G+   + ++   ++ ++      K + +F+ M K   +      N
Sbjct: 245 EAE---RVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYN 301

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            ++  L ++    EA+ L   ++      PN+ TY  L+   C+ +   EA +V++EM++
Sbjct: 302 AVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLE 361

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG  P +  ++  +  +L+ G+  +  +L   M+  G  P V +Y ++I K C+      
Sbjct: 362 KGLFPTIRTYHAFMR-ILRTGE--EVFELLAKMRKMGCEPTVETYIMLIRKLCRW----- 413

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                     R  D V  L  EM+E+   PD  +Y  +I  + +    +EA   YKEM  
Sbjct: 414 ----------RDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKD 463

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            G +P  +  +MI +S+F    Y   R
Sbjct: 464 KGMRPNENVEDMI-QSWFSGKQYAEQR 489



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 26/251 (10%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAV 435
           +G+   V  ++ M+  L K+ K   A  L + M+   PS  N ++  IMI K+C  +   
Sbjct: 115 QGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVG 174

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGC-------------------PPDGLTYNALIK 476
                     R ++++  D  + +    C                   P D  ++N ++ 
Sbjct: 175 KAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLN 234

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
               +   P EA R++ EM   G K  + +Y+ ++  Y + G+     K++D M +    
Sbjct: 235 GWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIE 294

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLDYNKFAADLSRAGRS----Y 590
           PD   Y  ++  L       EA   ++ M E KG++  V+ YN     L +A ++     
Sbjct: 295 PDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQ 354

Query: 591 VLDELAQKMRF 601
           V DE+ +K  F
Sbjct: 355 VFDEMLEKGLF 365


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/424 (32%), Positives = 214/424 (50%), Gaps = 52/424 (12%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
           + R+  ++ E  S    ++  L+ CG+  S  LVV+VL R R+    AF FF WA  +PG
Sbjct: 83  VRRIVDILQEPGSSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPG 142

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKERK 296
           +AH+ R Y+SM+SILG+ R+F+T  ++++EM  G  G  L++  T  I +  + A  +  
Sbjct: 143 YAHSLRAYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVG 202

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           KA+  F    ++KF  G++    LL  L R K  ++A+ L    ++ F  +  ++ ++L 
Sbjct: 203 KAINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCNRNVFPFDTKSFNIILN 262

Query: 357 GWCRVKNLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           GWC V   M EA R W EM ++G + DVV+++ ++    K+   +  +KLF  MK    +
Sbjct: 263 GWCNVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIA 322

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+ + Y          NA V+      F     +    +L+K ME +G  PD +TYN+LI
Sbjct: 323 PDRKVY----------NAVVHALAKASF-----VKEALNLMKAMEGKGIAPDSVTYNSLI 367

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN-------------MIMKSYFQTG----- 517
           K +   +  +EA  ++ EM++ G  PTI TY+             M+++   +TG     
Sbjct: 368 KPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDK 427

Query: 518 -NYEM-------------GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             Y M               K+W EM   G  PD +SY VLI GL    +  EAYKY  E
Sbjct: 428 DTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIE 487

Query: 564 MLEK 567
           M EK
Sbjct: 488 MKEK 491


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 231/466 (49%), Gaps = 39/466 (8%)

Query: 129 LATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVI 188
            +T+I DS  V +   +   DD  D D  C  ++   E+ S          ++ ++ K++
Sbjct: 57  FSTSIADSEQVGFTRSNIEKDDESDIDLGCSISD---ELVS---------EDVGKISKLV 104

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
            +  S  + +   L+EC +  S+ LVV++L R R+    AF FF WAG + G+  + R Y
Sbjct: 105 KDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREY 164

Query: 249 NSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +SM+SILG+ R+F+T  ++++EM +    L++ +T  I +  + A  +  KA+  F    
Sbjct: 165 HSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYK 224

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLM 365
           ++K + G+D    LL  L R K   +A  L    K ++  +  ++ ++L GWC V  +  
Sbjct: 225 RFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPR 284

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA RVW EM + G K DVV+++ M+    K G  +  +KLF+ MK +   P+ + Y  ++
Sbjct: 285 EAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVV 344

Query: 426 WKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
               K                      N   Y  LI      R+ +    +  EM E+G 
Sbjct: 345 HALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGL 404

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P   TY+A    M+I +  +E   +  +M + G +PT+ TY M+++   +  +++    
Sbjct: 405 FPTIRTYHAF---MRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLL 461

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           +WDEM  +   PD +SY V+I GL    +  EAY Y +EM +KGM+
Sbjct: 462 LWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMR 507



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 150/327 (45%), Gaps = 33/327 (10%)

Query: 204 ECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMS----ILGRAR 259
           E GI+   +L+   L R+++        FC   +K  +  +++++N +++    ++G  R
Sbjct: 229 EMGIDDFQSLL-SALCRYKNVSDAGHLIFC---NKDKYPFDAKSFNIVLNGWCNVIGSPR 284

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + E    +  EMG  G+   + ++   ++ ++      K + +F+ M K   +      N
Sbjct: 285 EAE---RVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYN 341

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            ++  L ++    EA+ L   ++      PN+ TY  L+   C+ +   EA +V++EM++
Sbjct: 342 AVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLE 401

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG  P +  ++  +  +L+ G+  +  +L   M+  G  P V +Y ++I K C+      
Sbjct: 402 KGLFPTIRTYHAFMR-ILRTGE--EVFELLAKMRKMGCEPTVETYIMLIRKLCRW----- 453

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                     R  D V  L  EM+E+   PD  +Y  +I  + +    +EA   YKEM  
Sbjct: 454 ----------RDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKD 503

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            G +P  +  +MI +S+F    Y   R
Sbjct: 504 KGMRPNENVEDMI-QSWFSGKQYAEQR 529



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 26/251 (10%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAV 435
           +G+   V  ++ M+  L K+ K   A  L + M+   PS  N ++  IMI K+C  +   
Sbjct: 155 QGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVG 214

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGC-------------------PPDGLTYNALIK 476
                     R ++++  D  + +    C                   P D  ++N ++ 
Sbjct: 215 KAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLN 274

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
               +   P EA R++ EM   G K  + +Y+ ++  Y + G+     K++D M +    
Sbjct: 275 GWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIE 334

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLDYNKFAADLSRAGRS----Y 590
           PD   Y  ++  L       EA   ++ M E KG++  V+ YN     L +A ++     
Sbjct: 335 PDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQ 394

Query: 591 VLDELAQKMRF 601
           V DE+ +K  F
Sbjct: 395 VFDEMLEKGLF 405


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 209/416 (50%), Gaps = 53/416 (12%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           M++ +++CGI +S  LV++VL R R+    AF FF WA  +PG+AH+ R Y+SM+SILG+
Sbjct: 42  MKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPGYAHSVREYHSMISILGK 101

Query: 258 ARQFETMVSMLEEM-GEK---GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
            R+F+T   +++EM G K    L++ +T  I +  + A  +  +A+  F    ++KF  G
Sbjct: 102 MRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVGRAINTFYAYKRFKFDMG 161

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR-VKNLMEAGRVWN 372
           ++    LL  L R K  ++A+ L    K  F  N  ++ ++L GWC  + +  E+ RVW 
Sbjct: 162 IEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLNGWCNLIGSPRESERVWR 221

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM  +G + DVV++  M+    K G     ++L++ MK  G  P+ +             
Sbjct: 222 EMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGIEPDRK------------- 268

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
             VY  +I      R ++  ++L+K MEE+G  P+ +TYN+LIK +   +  +EA   + 
Sbjct: 269 --VYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFD 326

Query: 493 EMVRSGFKPTIHTYN--------------------------------MIMKSYFQTGNYE 520
           +M++    PTI TY+                                M+++ + +    E
Sbjct: 327 DMLKRCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLE 386

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAPVLD 575
              K+WDEM   G  PD +SY VLI GL        A+KY  EM EK  +  P +D
Sbjct: 387 NVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLLPEPKID 442



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%)

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P E+ R+++EM + G +  + +Y  +M  Y + G+     +++ +M + G  PD   Y  
Sbjct: 213 PRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGIEPDRKVYNA 272

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +I  L       EA+  ++ M EKG+   ++ YN     L RA
Sbjct: 273 VIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRA 315


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 239/457 (52%), Gaps = 29/457 (6%)

Query: 161 NNSESEITSVSYKSTADPR---EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDV 217
           +N  S+  ++++  TA PR   + E +C+++    +    ++A L       S  LV++V
Sbjct: 36  SNGPSKTHTLAFH-TAQPRPTPDAEAICRILST--TPASTVDACLAAVPAKPSPELVLEV 92

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
           L +  +A   A  FF WA  +  F H +  +++++  LG+ RQF+ + +++ +M ++ LL
Sbjct: 93  LNKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKLL 152

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           + +TF +    +A A++ K+A+  FE M  Y  K  V   N L++ L +SK  +EA  +F
Sbjct: 153 TSDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVF 212

Query: 338 DKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           DK+ K R  P++ +YT+LL GW + +NL++   V  EM DKGF+ DVVA+ I++    K 
Sbjct: 213 DKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKA 272

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------WKFCKQN-----AAVY 436
            K  +AI L+  MKA+G  P+   Y  +I               ++  K +     A  Y
Sbjct: 273 KKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTY 332

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             ++  +    RMD  Y ++ EM++ G  P+  T++ ++  +   +  +EA  +++ M  
Sbjct: 333 NAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNG 392

Query: 497 SGF--KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             F  +P++ TY ++++ +      +M   VWDEM  +G  P  + ++ L+  L  + + 
Sbjct: 393 GEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKL 452

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
            EA KY +EML+ G++ P   ++     L  AG  +V
Sbjct: 453 DEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHV 489


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 209/398 (52%), Gaps = 44/398 (11%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L+  GI+ ++NLV+ VL+R R   +PAF FF W      +  +   YN +++ILG+
Sbjct: 84  IEQALNLIGIHPNNNLVLQVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINILGK 143

Query: 258 ARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            + FE +  +L+EM + K  ++ ETF I +  F AA + ++A+ IF    ++     +D+
Sbjct: 144 MKCFEELHQVLDEMSQRKEFINEETFCILIRRFVAAHKLEEAINIFYRREEFGLDNELDS 203

Query: 317 --INCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
                LL  + R K  +EA+ LF +   K RF  ++ T+ V+L GWC + N  EA R+W 
Sbjct: 204 KAFRTLLMWMCRYKHIEEAETLFHRNLNKFRFCRDIKTWNVILNGWCVLGNTHEAKRLWK 263

Query: 373 EMI-------------------DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++I                   ++  KPDVV  N +++GL    +  +A+++F  MK + 
Sbjct: 264 DIIAYKCKEIGNCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKERD 323

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG--CPPDGLTY 471
             PNV               A Y  LI      RRM+ VY+L+++ME R   C P+G+TY
Sbjct: 324 CLPNV---------------ATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTY 368

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           + L++ +K    P+E   + + M R+G   +    N+I++ Y +  + +  RK WDEM R
Sbjct: 369 SYLLQSLK---APEEVPAVLERMERNGCAMSDDICNLILRLYMKWDDLDGLRKTWDEMER 425

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            G  PD  SYT++I G     R+ +A +Y +EM  KG+
Sbjct: 426 NGLGPDRRSYTIMIHGHYENGRTKDAMRYFQEMTSKGI 463


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 206/395 (52%), Gaps = 26/395 (6%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E +LD+CGI L+  LV +V+ R R   +PA+           +  +S  YN ++ +LG+
Sbjct: 90  IERILDKCGIQLTEELVFEVVNRNRSDWKPAYILSRLIVKHSVYISSSLVYNEILDVLGK 149

Query: 258 ARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            R+FE    +++EM ++ G +  +T+++ +N +AAA +  +AV +FE   ++  +  +  
Sbjct: 150 MRRFEEFHQVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEAVGVFERRREFGIEDDLVA 209

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            + LL  L R K  + A+ LF   +  F  ++ T  ++L GWC + N+ EA R+W ++I 
Sbjct: 210 FHGLLMWLCRYKHVEFAETLFCSRRREFGCDIRTMNIILNGWCVLGNVHEAKRIWKDIIA 269

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC------- 429
              KPDVV++  M+  L K GK   A++L+  +   G +P+V+    +I   C       
Sbjct: 270 SKCKPDVVSYGTMINALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDALCFKKRIPE 329

Query: 430 -------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG--CPPDGLTYNAL 474
                          N   Y  L+      RR + V++L++EME +G  C P+ +T+  L
Sbjct: 330 ALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYL 389

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +K  +  K  D    + + M ++  + T   YN++ + Y Q  N E  R++W EM R G 
Sbjct: 390 LKYSQRSKDVDA---VLERMAKNKCEMTSDLYNLMFRLYVQWDNEEKVREIWGEMERSGL 446

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            PD  +YT+ I GL ++ + GEA  Y +EM+ KGM
Sbjct: 447 GPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGM 481



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 16/254 (6%)

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            Y  +L    +++   E  +V +EM  +    D   + ++L       K  +A+ +FE  
Sbjct: 139 VYNEILDVLGKMRRFEEFHQVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEAVGVFERR 198

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           +  G   ++ ++  ++   C+     +    T F +RRR            E GC  D  
Sbjct: 199 REFGIEDDLVAFHGLLMWLCRYKHVEFA--ETLFCSRRR------------EFGC--DIR 242

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           T N ++    +     EA RI+K+++ S  KP + +Y  ++ +  + G      +++  +
Sbjct: 243 TMNIILNGWCVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRAL 302

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              G  PD      +I  L  + R  EA +  +EM EKG    V+ YN     L +  R+
Sbjct: 303 WETGRNPDVKICNNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRT 362

Query: 590 YVLDELAQKMRFSG 603
             + EL ++M   G
Sbjct: 363 EKVWELVEEMEHKG 376



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 36/213 (16%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           N V+D L  F+     A   F    +K G + N  TYNS++  L + R+ E +  ++EEM
Sbjct: 315 NNVIDAL-CFKKRIPEALEVFKEMSEK-GPSPNVVTYNSLLKHLCKIRRTEKVWELVEEM 372

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
             KG  S     +         +R K V                  + +LE + ++K   
Sbjct: 373 EHKGG-SCSPNDVTFGYLLKYSQRSKDV------------------DAVLERMAKNKCEM 413

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            + L               Y ++   + +  N  +   +W EM   G  PD   + I + 
Sbjct: 414 TSDL---------------YNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIH 458

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           GL   GK  +A+  F+ M +KG  P  R+  ++
Sbjct: 459 GLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLL 491


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 197/399 (49%), Gaps = 28/399 (7%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           L+ C I +S  LVV VL R R+    AF FF WAG +PG+AH+ R Y+SM+SILG+ R+F
Sbjct: 34  LEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQPGYAHSVREYHSMISILGKMRKF 93

Query: 262 ETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
           +T  ++++EM  G  G  L++ +T  I +  + A  +  KA+  F    ++ F  G++  
Sbjct: 94  DTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHDVAKAINTFYAHKRFGFNIGLEEF 153

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
             LL  L R K  K+A+ L    K  F  N  ++ ++L GWC + +L +  RVW EM  +
Sbjct: 154 QSLLSALCRYKNVKDAEYLLFCNKDVFPFNTKSFNIILNGWCVIGSLRDTERVWKEMTRR 213

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------- 430
           G   D V++   +    K+      ++LFE MK     P+ + Y  +I    K       
Sbjct: 214 GISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSLAKGRCLKEA 273

Query: 431 -------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         N   Y  +I      RR D    + +E+ +RG  P   TY+A ++ 
Sbjct: 274 ADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFLRF 333

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           ++ +   +E   + K+M   G  PT  TY M+++ + +    +   ++W EM   G  PD
Sbjct: 334 LRTE---EEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPD 390

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAPVLD 575
            +SY VLI GL    +  +A+KY  EM EK  +  P +D
Sbjct: 391 RSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPEPKID 429



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           R++KEM R G      +Y   +  Y +  N     +++++M R    PD   Y  +I  L
Sbjct: 205 RVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSL 264

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQK 598
                  EA   ++ M EKG+ A V+ YN     L +A R      V +EL Q+
Sbjct: 265 AKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQR 318


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 227/466 (48%), Gaps = 35/466 (7%)

Query: 129 LATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVI 188
            +T+I DS  V +   +   DD  + + + D           +        ++  + K++
Sbjct: 2   FSTSIADSEQVGFTRSNIEKDDESEEEIDLD--------LGFTISDDGVSEDVGTIVKLL 53

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
               S  + +   L+EC +  S+ LVV++L + R+    AF FF WAG + G+  + R Y
Sbjct: 54  KNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQGYVRSVREY 113

Query: 249 NSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +SM+SILG+ R+F+T  ++++EM +    L++ +T  I +  + A  +  KA+  F    
Sbjct: 114 HSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYK 173

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLM 365
           ++K + G+D    LL  L R K   +A+ L    K  +  +  ++ ++L GWC V  +  
Sbjct: 174 RFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPR 233

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA RVW EM + G K DVV+++ M+    K G  +  +KLF+ MK +   P+ + Y  +I
Sbjct: 234 EAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVI 293

Query: 426 WKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
               K                      N   Y  LI      R+ +    +  EM E+G 
Sbjct: 294 HALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGL 353

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P   TY+A    M+I +  +E   +  +M + G +PT+ TY M+++   +  +++    
Sbjct: 354 FPTIRTYHAF---MRILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLL 410

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           +W+EM  +G  PD +SY V+I GL    +  EAY Y +EM EKGM+
Sbjct: 411 LWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMR 456



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 152/329 (46%), Gaps = 33/329 (10%)

Query: 204 ECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMS----ILGRAR 259
           E GI+   +L+   L R+++        FC   +K  +  +++++N +++    ++G  R
Sbjct: 178 EMGIDDFQSLL-SALCRYKNVSDAEHLIFC---NKDTYPFDAKSFNIVLNGWCNVIGSPR 233

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + E    +  EMG  G+   + ++   ++ ++      K + +F+ M K   +      N
Sbjct: 234 EAE---RVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYN 290

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            ++  L ++    EA+ L   ++      PN+ TY  L+   C+ +   EA +V++EM++
Sbjct: 291 AVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLE 350

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG  P +  ++  +  +L+ G+  +  +L   M+  G  P V +Y ++I K C+      
Sbjct: 351 KGLFPTIRTYHAFMR-ILRTGE--EVFELLAKMRKMGCQPTVDTYIMLIRKLCRW----- 402

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                     R  D V  L  EM+E+G  PD  +Y  +I  + +    +EA   YKEM  
Sbjct: 403 ----------RDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKE 452

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            G +P  +  +MI +S+F    Y   R +
Sbjct: 453 KGMRPNENVEDMI-QSWFSGKQYAEQRVI 480



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 26/251 (10%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAV 435
           +G+   V  ++ M+  L K+ K   A  L + M+   PS  N ++  IMI K+C  +   
Sbjct: 104 QGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVG 163

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGC-------------------PPDGLTYNALIK 476
                     R ++++  D  + +    C                   P D  ++N ++ 
Sbjct: 164 KAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLN 223

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
               +   P EA R++ EM   G K  + +Y+ ++  Y + G+     K++D M +    
Sbjct: 224 GWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIE 283

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLDYNKFAADLSRAGRS----Y 590
           PD   Y  +I  L       EA   ++ M E KGM+  V+ YN     L +A ++     
Sbjct: 284 PDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQ 343

Query: 591 VLDELAQKMRF 601
           V DE+ +K  F
Sbjct: 344 VFDEMLEKGLF 354


>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Brachypodium distachyon]
          Length = 548

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 211/436 (48%), Gaps = 39/436 (8%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG-- 256
           EA LD  G  L+  LV DV+ R R+  + AFRFF WA  +  + H+   YN ++  L   
Sbjct: 93  EAALDALGAELTTPLVSDVMHRLRYEEKLAFRFFAWASQQDNYEHDQAAYNEVIDTLSGT 152

Query: 257 --RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK--- 311
             +ARQF  +  +L+ M      S+    +   A   A   K    + +L  K + +   
Sbjct: 153 RYKARQFGVLCDVLDHMKRHRTRSVPVEDLL--AILRAYTEKHLTNLRKLAKKRRVRMRT 210

Query: 312 -AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               D +N LL+   +  + +EA+ +F ++K +   N  TY +L  GWCR ++  +A +V
Sbjct: 211 PPETDALNILLDAFCKCGMVREAETVFGRVKRKLQGNAETYNILFFGWCRARDPKKAMKV 270

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS---PNVRSYTIMIWK 427
             EMI     P+   +   ++     G  S+A +LFE M+ +G S   P  ++Y++MI  
Sbjct: 271 LEEMILMKHAPESFTYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPTAKAYSVMIVA 330

Query: 428 F--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                                C  + + +  LI G     ++D  Y +L+EM + G PPD
Sbjct: 331 LVKADRMDDCFELISDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKAGFPPD 390

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN  ++++   +  D+A+++ + M+ +  +P++HTYNM+M  +FQ         +W 
Sbjct: 391 IVTYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHTYNMLMVMFFQMREPHRALDIWL 450

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLS 584
           EM +RGC    ++Y ++I GL    R+ +A   L+E++   MK   L Y KF A    LS
Sbjct: 451 EMDKRGCRRAVDTYEIMIDGLFDCGRTEDATNLLDEVINHDMK---LSYKKFDAIMLQLS 507

Query: 585 RAGRSYVLDELAQKMR 600
             G    +  L++ MR
Sbjct: 508 AVGNLGAIHRLSEHMR 523


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 213/416 (51%), Gaps = 28/416 (6%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           ++++ +  +I +  S    ++  L++C +  S  LVV+VL R R+    AF FF WAG +
Sbjct: 99  KDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQ 158

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKE 294
           PG+ H+ R Y+SM+S+LG+ R+F+T  +++EEM  G+ G  +++ +T  I +  + A  +
Sbjct: 159 PGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHD 218

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             +A+  F    ++ F+ G+     LL  L R K  ++A+ L    K+ F  +  ++ ++
Sbjct: 219 VGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNII 278

Query: 355 LGGWCR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L GWC  + +   A R+W EM  +  + DVV++  ++    K  K    ++LFE MK + 
Sbjct: 279 LNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRN 338

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            +P+ + Y  +I+   K                     +A  Y  LI      R++D   
Sbjct: 339 ITPDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAK 398

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           ++   M ERG  P   T++A  ++++++   +E   +  +M   G  PTI TY M+++ +
Sbjct: 399 EIFNVMLERGISPSIRTFHAFFRILRVK---EEVFELLDKMKELGCNPTIETYIMLIRKF 455

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +    +  +++W+ M   G   D +SY VLI GL    +  EAYKY  EM EKG 
Sbjct: 456 CRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGF 511



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 7/181 (3%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           + + YN+++  L + R  +  V+++ +M +  +     T+   +     A++  +A  IF
Sbjct: 342 DRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIF 401

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            +M +      + T +     L   ++ +E   L DK+K     P + TY +L+  +CR 
Sbjct: 402 NVMLERGISPSIRTFHAFFRIL---RVKEEVFELLDKMKELGCNPTIETYIMLIRKFCRW 458

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPNVR 419
           + L E  R+WN M + G   D  ++ +++ GL    K  +A K +  M+ KG  P P   
Sbjct: 459 RQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTE 518

Query: 420 S 420
           S
Sbjct: 519 S 519


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 218/447 (48%), Gaps = 53/447 (11%)

Query: 167 ITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARR 226
           I  ++ K     +++  +  ++ +L      M+  ++ CG+ +S  LV++VL R R+   
Sbjct: 83  IRQLNLKDEGLVQDVTIIMSILHQLSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWE 142

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEK---GLLSMETF 282
            AF FF WAG + G++H+ R Y++M+SILG+ R+F+T  ++++EM G K    L++ +T 
Sbjct: 143 AAFTFFLWAGRQLGYSHSVREYHAMISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTL 202

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342
            I +  + A  +  +A+  F    ++KF  G+D    LL  L R K  ++A+ L    K 
Sbjct: 203 LIMIRKYCAVHDVGRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKD 262

Query: 343 RFTPNLTTYTVLLGGWCRV-KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
            F  N  ++ ++L GWC V  +  EA R+W EM  +    DVV++  ++    K G    
Sbjct: 263 VFPFNTKSFNIVLNGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYK 322

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             KL+  MK  G  P+ +               +Y  +I      R +    +L+K MEE
Sbjct: 323 VFKLYNQMKEVGIEPDRK---------------IYNSVIFALAKGRHVSEAINLMKTMEE 367

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY--------------- 506
           +G  P+ +TYN+LIK +   +  DEA  ++ EM++ G  PTI TY               
Sbjct: 368 KGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFFRSLRTGEEVFA 427

Query: 507 -----------------NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
                             M+++ + +   ++   K+W+++   G  PD +SY VLI GL 
Sbjct: 428 LLENMRKLGCHPTIDTYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLF 487

Query: 550 SQDRSGEAYKYLEEMLEKG-MKAPVLD 575
              +  EAYK+  +M EK  +  P LD
Sbjct: 488 LNGKLEEAYKFYADMKEKQLLPDPKLD 514



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%)

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P EA RI++EM +      + +Y  I+  Y + GN     K++++M   G  PD   Y  
Sbjct: 285 PREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNS 344

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +I  L       EA   ++ M EKG+    + YN     L RA
Sbjct: 345 VIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRA 387


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 204/387 (52%), Gaps = 24/387 (6%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           I LS +LV  +L R++   + A   F WA  +P F H+S +Y+ M+ ILGR +  E +  
Sbjct: 71  IPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVMEKLRD 130

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           +LEEM E GL++M T   AM  F  A +   AV IF+ +     +   +++N LL+ L +
Sbjct: 131 LLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDTLCK 190

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K  ++A+ +F +LK    PN  T+ + + GWC++  + EA     EM   GF P V+++
Sbjct: 191 EKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISY 250

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW------KF------------ 428
           + +++   + G  S   +L + M+A+G S NV +YT ++       KF            
Sbjct: 251 STLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRS 310

Query: 429 --CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQKMPD 485
             C+ +   +  LI   G   R+D   D+ K EM + G  P+  TYN++I +        
Sbjct: 311 SGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEK 370

Query: 486 EAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYE-MGRKVWDEMI-RRGCCPDDNSYT 542
            A+ I KEM  S G KP   TY+ ++KS F++G  + +  ++ ++MI ++    D ++YT
Sbjct: 371 RALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYT 430

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +LI GL  +DR   A+   EEM+++ +
Sbjct: 431 LLIHGLCREDRCNWAFSLFEEMIDQDI 457



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 21/201 (10%)

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G+  DA+++F+ ++A G   N  S  +++   CK+           F  + R +I  +L 
Sbjct: 157 GQWVDAVRIFDDLQALGLEKNTESMNLLLDTLCKEK----------FVQQAR-EIFLELK 205

Query: 457 KEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           + +      P+  T+N  I    KI ++ DEA    +EM   GF P + +Y+ +++ Y Q
Sbjct: 206 QHI-----APNAHTFNIFIHGWCKICRV-DEAHWTIQEMKGYGFHPCVISYSTLIQCYCQ 259

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            GN+    ++ DEM  +GC  +  +YT ++  L    +  EA K  E M   G +   L 
Sbjct: 260 EGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLF 319

Query: 576 YNKFAADLSRAGRSYVLDELA 596
           +N     L RAGR   LD+ A
Sbjct: 320 FNSLIHTLGRAGR---LDDAA 337



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 41/212 (19%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMV-------------------SMLEEMGEKGLL--S 278
           G + N  TY S+M  LG+A++FE  +                   S++  +G  G L  +
Sbjct: 277 GCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDA 336

Query: 279 METFKIAM----------------NAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLL 321
            + FK+ M                + F    + K+A+ I  E+ N    K    T + L+
Sbjct: 337 ADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLI 396

Query: 322 ENLGRS-KLPKE-AQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           ++  RS K+    +++L D + K   + +L+TYT+L+ G CR      A  ++ EMID+ 
Sbjct: 397 KSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQD 456

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
             P      ++L+ + +      A K+ ++MK
Sbjct: 457 IIPRYRTCRLLLDEVKQKNMYQAAEKIEDLMK 488


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 210/404 (51%), Gaps = 33/404 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ME+ L   GI LS +LV   L R R+  + A  FF WA D+   +H+  +YN ++ IL +
Sbjct: 70  MESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAK 129

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AGVD 315
            RQF+     + EM +  L  +  TF+I +    +A   ++AV  F+ M+ +  K A  D
Sbjct: 130 VRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSD 189

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
               LL+ L +    K A  +F++ K +F  N   YT+L+ GWC++  +  A R+  EM+
Sbjct: 190 DFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMV 249

Query: 376 DKGFKPDVVAHNIMLEGLLKIG--------KRS--DAIKLFEVMKAKGPSPNVRSYTIMI 425
           ++G + +VV +N++L G+ +          +R+  DA K+ + M+ KG  P+V SY+I+I
Sbjct: 250 ERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVI 309

Query: 426 WKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             + + +                     A YT ++    +  R++   +L+ +M + G  
Sbjct: 310 HVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVS 369

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P   TYN   K  + +K  D A+R+Y++M       P +HTYN+++  + +    E+ ++
Sbjct: 370 PSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQE 429

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +WD+M   G  PD +SYT+LI GL  + +  EA  +  EM+EKG
Sbjct: 430 IWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKG 473



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 136/311 (43%), Gaps = 44/311 (14%)

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLK 341
           KIA++ F  AK++                  V + N +++ L + +    A Q + +  +
Sbjct: 98  KIALSFFLWAKDQAHH------------SHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQ 145

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM---IDKGFKPDVVAHNIMLEGLLKIGK 398
           +   P  TT+ +L+          +A R +++M   ++K    D   +  +L+ L K G 
Sbjct: 146 NSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCY--LLDTLSKYGY 203

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A ++F   K K  + N + YTI+I+ +CK N               R+ I   LL E
Sbjct: 204 VKLASQIFNQRKFKFEA-NAKMYTILIYGWCKIN---------------RVSIAERLLGE 247

Query: 459 MEERGCPPDGLTYNALIKLM----------KIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           M ERG   + +TYN L+  +          + ++   +A ++  EM + G +P + +Y++
Sbjct: 248 MVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSI 307

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++  Y +    E+       M  +G  P   +YT ++  L S  R  +A + + +M++ G
Sbjct: 308 VIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDG 367

Query: 569 MKAPVLDYNKF 579
           +      YN F
Sbjct: 368 VSPSAATYNCF 378



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            +   Y  +I      R+ D+ +  + EM++    P   T+  LI+      +  +AVR 
Sbjct: 115 HDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRA 174

Query: 491 YKEMVRSGF---KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS--YTVLI 545
           + +M  S F         +  ++ +  + G  ++  +++++   R    + N+  YT+LI
Sbjct: 175 FDDM--SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQ---RKFKFEANAKMYTILI 229

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            G    +R   A + L EM+E+G++A V+ YN     + R    +  D   + +R + K
Sbjct: 230 YGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEK 288


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 195/398 (48%), Gaps = 68/398 (17%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA---GDKPGFAHNSRTYNSMMSI 254
           +E  L +C ++L+ +LV+DVL+R R   RPA+ FF WA   G + G++     +N ++ I
Sbjct: 105 IEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHNEILDI 164

Query: 255 LGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAA-KERKKAVAIFELMNKYKFKA 312
           LGR R+F  M  + +EM + KGL++  TF + +N +AAA K  + AV IF     YK K 
Sbjct: 165 LGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAAVKIF-----YKRKG 219

Query: 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
                                              + +  V+L GWC + +L EA R WN
Sbjct: 220 AW---------------------------------IRSMNVILNGWCVLGSLREAKRFWN 246

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------- 425
           ++I    KPD   + I +  L K GK S A+KLF+ M  KG +P+V     +I       
Sbjct: 247 DIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKK 306

Query: 426 -------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                         + C+ + A Y  LI      +R + VY+LL +ME++GC P+  TY 
Sbjct: 307 RIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYG 366

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG-RKVWDEMIR 531
               L+K  K P+E   I + M R+G +     YN+I+K Y   G YE+  R   DEM R
Sbjct: 367 Y---LLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWG-YELKLRSTLDEMER 422

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            G  PD  +YT++I GL  + R  +A  Y ++M   GM
Sbjct: 423 NGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 460



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---- 430
           I+ G+ P    HN +L+ L ++ +  +  +LF+ M  +    N R++ +++ ++      
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKT 206

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           + AAV           R M+++                   N    L  ++    EA R 
Sbjct: 207 EEAAVKIFYKRKGAWIRSMNVIL------------------NGWCVLGSLR----EAKRF 244

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + +++ S  KP   TY + + S  + G      K++  M  +GC PD      +I  L  
Sbjct: 245 WNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCF 304

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + R  EA + L EM E+  +  V  YN     L +  R   + EL   M   G
Sbjct: 305 KKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKG 357


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 201/398 (50%), Gaps = 28/398 (7%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           R +E  L +C   ++ +L++ VL+R R   +PA  FF W          S  YN ++ IL
Sbjct: 65  RKIELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEILDIL 124

Query: 256 GRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           G+ R+F+ +  +L+ M ++ GL++ ET+++ +N +AAA + ++A+ IF        +  +
Sbjct: 125 GKMRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGLEIDL 184

Query: 315 DTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            +   LL  L R K  + A+ LL+ K K  F  ++ T  ++L GWC + N+ EA R W +
Sbjct: 185 VSFQNLLMFLCRYKHVQIAESLLYSKGKD-FGMDIKTMNIVLNGWCVLGNVHEAKRFWKD 243

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV--------------- 418
           +I    KPD+  +   ++ L K GK   A+K++  M  K   P+V               
Sbjct: 244 IIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNR 303

Query: 419 -----RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPDGLTY 471
                  +  M  + C  N A Y  LI  F   RRM+ VY+LL EM ++   C PD +T+
Sbjct: 304 VPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPDHITF 363

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N L+K +   K P+E   + + M R+G   +  TYN+I++ Y      E     W+EM +
Sbjct: 364 NYLLKAL---KKPEELPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDTWNEMEK 420

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            G  PD  SYT++I  L  + R  +A  Y  EM  KGM
Sbjct: 421 LGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGM 458



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA R +K+++ S  KP + TY   +K+  + G      K++  M  + C PD      +I
Sbjct: 236 EAKRFWKDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCII 295

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             L  ++R  EA +   EM ++G       YN      SR  R   + EL  +M
Sbjct: 296 DALCFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEM 349


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 208/404 (51%), Gaps = 33/404 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ME+ L   GI LS +LV   L R R+  + A  FF WA D+   +H+  +YN ++ IL +
Sbjct: 70  MESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAK 129

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AGVD 315
            RQF+     + EM +  L  +  TF+I +    +A   ++AV  F+ M+ +  K A  D
Sbjct: 130 VRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSD 189

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
               LL+ L +    K A  +F++ K +F  N   YT+L+ GWC++  +  A R+  EM+
Sbjct: 190 DFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMV 249

Query: 376 DKGFKPDVVAHNIMLEGLLKIG--------KRS--DAIKLFEVMKAKGPSPNVRSYTIMI 425
           ++G   +VV +N++L G+ +          +R+  DA K+ + M+  G  P+V SY+I+I
Sbjct: 250 ERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVI 309

Query: 426 WKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             + + +                     A YT ++    +  R++   +L+ +M + G  
Sbjct: 310 HVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVS 369

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P   TYN   K  + +K  D A+R+Y++M       P +HTYN+++  + +    E+ ++
Sbjct: 370 PSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQE 429

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +WD+M   G  PD +SYT+LI GL  + +  EA  +  EM+EKG
Sbjct: 430 IWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKG 473



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 136/311 (43%), Gaps = 44/311 (14%)

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLK 341
           KIA++ F  AK++                  V + N +++ L + +    A Q + +  +
Sbjct: 98  KIALSFFLWAKDQAHH------------SHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQ 145

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM---IDKGFKPDVVAHNIMLEGLLKIGK 398
           +   P  TT+ +L+          +A R +++M   ++K    D   +  +L+ L K G 
Sbjct: 146 NSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCY--LLDTLSKYGY 203

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A ++F   K K  + N + YTI+I+ +CK N               R+ I   LL E
Sbjct: 204 VKLASQIFNQRKFKFEA-NAKMYTILIYGWCKIN---------------RVSIAERLLGE 247

Query: 459 MEERGCPPDGLTYNALIKLM----------KIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           M ERG   + +TYN L+  +          + ++   +A ++  EM + G +P + +Y++
Sbjct: 248 MVERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSI 307

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++  Y +    E+       M  +G  P   +YT ++  L S  R  +A + + +M++ G
Sbjct: 308 VIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDG 367

Query: 569 MKAPVLDYNKF 579
           +      YN F
Sbjct: 368 VSPSAATYNCF 378



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            +   Y  +I      R+ D+ +  + EM++    P   T+  LI+      +  +AVR 
Sbjct: 115 HDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRA 174

Query: 491 YKEMVRSGF---KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS--YTVLI 545
           + +M  S F         +  ++ +  + G  ++  +++++   R    + N+  YT+LI
Sbjct: 175 FDDM--SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQ---RKFKFEANAKMYTILI 229

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            G    +R   A + L EM+E+G+ A V+ YN     + R    +  D   + +R + K
Sbjct: 230 YGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAEK 288


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 34/488 (6%)

Query: 94  QVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQD 153
           + P  +P +   H +    LN   ++      +  L  NI      +Y +    +D    
Sbjct: 19  RFPSFIPPAFQFHIISSAQLNPQFSL------HTKLTHNIPSFTNAHYNHSWVSSDTGLT 72

Query: 154 SDGECDGNNSESEITSVSY--KSTADPR------EIERVCKVIDELFSLD-RNMEAVLDE 204
             G+ +G +     TS  +  +S  DP          +V  +  +L SL        LD+
Sbjct: 73  CHGDAEGADLPGGYTSDEHIHESDEDPEVSNEGSGFNKVLSITKDLHSLPIEEARTALDD 132

Query: 205 CGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264
           CG   S NLV  +L R ++  + AFR F WAG +P ++H    Y++M+SILG  R+F+  
Sbjct: 133 CGFIPSPNLVQKLLRRLQYDGKAAFRVFQWAGSQPDYSHTVSVYHTMISILGVHRKFDKG 192

Query: 265 VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
             ++ +M E+ +++ +T  I +  +AAA + +KA+  F  M+K+K  A  D   CLL  L
Sbjct: 193 WGLIRKMHERAMVNRQTLMIMIKRYAAAHDARKAIKTFHAMDKFKLAADSDDFLCLLCAL 252

Query: 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLMEAGRVWNEMIDKGFKPDV 383
            R+   +EA+ L    K  +     ++ V+L GWC +  ++ +  R+W EM +    PD 
Sbjct: 253 CRNMFVEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVDVYQVKRLWEEMSNLCITPDA 312

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
            ++  ++    K GK  D ++L++ MK KG +PN++ Y          NA +Y       
Sbjct: 313 FSYTTVICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVY----------NAVIYV-----L 357

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
              R +    +L  ++ E G  P+ +TY  LI L+     P+EA     +M+  GF PTI
Sbjct: 358 SKERCVKEALNLFNKIREMGFHPNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPTI 417

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             Y+   +     G      K++D+M   GC P   +Y + I    S      A+K   +
Sbjct: 418 DIYHAFFRFVENEGAI---CKLFDKMFENGCAPTMETYIMSIRRCCSWSDYENAFKLWND 474

Query: 564 MLEKGMKA 571
           M +    A
Sbjct: 475 MEKHWFSA 482



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 116/286 (40%), Gaps = 18/286 (6%)

Query: 296 KKAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           K A  +F+   ++  +   V   + ++  LG  +   +   L  K+  R   N  T  ++
Sbjct: 154 KAAFRVFQWAGSQPDYSHTVSVYHTMISILGVHRKFDKGWGLIRKMHERAMVNRQTLMIM 213

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +    +  +A + ++ M       D      +L  L +     +A +L    K   P
Sbjct: 214 IKRYAAAHDARKAIKTFHAMDKFKLAADSDDFLCLLCALCRNMFVEEAEELIHFNKKCYP 273

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
               +S+ ++++ +C     VY               V  L +EM      PD  +Y  +
Sbjct: 274 L-ETKSFNVILYGWCNIFVDVYQ--------------VKRLWEEMSNLCITPDAFSYTTV 318

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I          + VR+Y EM + GF P +  YN ++    +    +    +++++   G 
Sbjct: 319 ICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREMGF 378

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKF 579
            P+  +YT LI  L    +  EAY YL++M+ +G   P +D Y+ F
Sbjct: 379 HPNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGF-VPTIDIYHAF 423


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 211/416 (50%), Gaps = 28/416 (6%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           ++++ +  ++ E+ S     +  L+ C ++LS  LVV+VL R R+    AF FF WAG +
Sbjct: 30  QDVKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAGKQ 89

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKE 294
           PG+AH+ R Y+SM+SILG+ R+F+T  +++EEM  G  G  L++ +T  I +  + A  +
Sbjct: 90  PGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHD 149

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             +A+  F    ++ F+ G++  + LL  L R K  ++A+ L    K+ F  +  ++ ++
Sbjct: 150 VARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKSFNII 209

Query: 355 LGGWCR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L GWC  + +   A R+W+EM  +  + DVV++  ++    K  K    +++F+ MK + 
Sbjct: 210 LNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRK 269

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
            +P+ + Y  +I+   K                     N   Y  LI       ++D   
Sbjct: 270 ITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAK 329

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L  E+ +R   P   T++A  ++++ +   +E   +  +M   G  PTI TY M+M+ +
Sbjct: 330 QLFYEILKRHLSPTIQTFHAFFRILRTK---EEVFELLDKMKELGCYPTIETYIMLMRKF 386

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +    +   K+WD M   G   D +SY VLI GL    +  EA+ Y  EM EKG 
Sbjct: 387 CRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGF 442



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 91/212 (42%), Gaps = 34/212 (16%)

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAI 301
           H+  +Y S++S   ++ +   ++ M +EM ++ +    + +   + A A  +  K+AV +
Sbjct: 237 HDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNL 296

Query: 302 FELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTT---------- 350
              +        V T N L++ L ++ K+ +  QL ++ LK   +P + T          
Sbjct: 297 IGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRT 356

Query: 351 ----------------------YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
                                 Y +L+  +CR + L +  ++W+ M + G   D  ++ +
Sbjct: 357 KEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIV 416

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           ++ GL   GK  +A   +  M+ KG  P  ++
Sbjct: 417 LIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKT 448



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A RI+ EM +   +  + +Y  I+  Y ++       +++DEM +R   PD   Y  +I 
Sbjct: 223 AERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIY 282

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            L       EA   +  + +  +   V+ YN     L +AG+   +DE  Q
Sbjct: 283 ALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGK---VDEAKQ 330


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 209/416 (50%), Gaps = 28/416 (6%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           ++++ +  ++ E+ S    ++  L+ C I LS  LVV+VL R R+    AF FF WAG +
Sbjct: 126 KDVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQ 185

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKGL--LSMETFKIAMNAFAAAKE 294
           PG+AH+ R Y+SM+SILG+ R+F+T  +++EEM  G  GL  ++ +T  I +  + A  +
Sbjct: 186 PGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCAVHD 245

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             +A+  F    ++ F+ G++  + LL  L R K  ++A+ L    K  F  +  ++ ++
Sbjct: 246 VARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSFNII 305

Query: 355 LGGWCR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L GWC  + +   A R+W+EMI +  + DVV++  ++    K  K    +++F+ MK + 
Sbjct: 306 LNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRK 365

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
            +P+ + Y  +I+   K                     +   Y  LI       ++D   
Sbjct: 366 ITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAK 425

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L  EM +R   P   T++A  ++++ +   +E   +  +M      PTI TY M+++ +
Sbjct: 426 QLFDEMLKRHLSPTIQTFHAFFRILRTK---EEVFELLDKMKELRCYPTIETYIMLIRKF 482

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +    +   K+WD M       D +SY VLI GL    +  EA +Y  EM EKG 
Sbjct: 483 CRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEKGF 538



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 148/336 (44%), Gaps = 37/336 (11%)

Query: 181 IERVCKVIDELFSLDR-NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           +  V + I+  ++  R N    L+E      H+L+   L R+++ +   +  FC   +K 
Sbjct: 243 VHDVARAINTFYAYKRFNFRVGLEEF-----HSLL-SALCRYKNVQDAEYLLFC---NKD 293

Query: 240 GFAHNSRTYNSMMS-----ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
            F  +++++N +++     I+  +        M++   +  ++S  +    ++ ++ + +
Sbjct: 294 VFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSI---ISCYSKSSK 350

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTV 353
             K + +F+ M K K        N ++  L + +L KEA  L   ++ +  TP++ TY  
Sbjct: 351 LYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNS 410

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+   C+   + EA ++++EM+ +   P +   +     L     + +  +L + MK   
Sbjct: 411 LIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRIL---RTKEEVFELLDKMKELR 467

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P + +Y ++I KFC+       C         ++D V+ +   M E     D  +Y  
Sbjct: 468 CYPTIETYIMLIRKFCRW------C---------QLDDVFKIWDAMREDEISHDRSSYIV 512

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           LI  + +    +EA R Y EM   GF P   T  M+
Sbjct: 513 LIHGLFLNGKLEEAQRYYAEMQEKGFLPEPKTEEML 548



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A RI+ EM++   +  + +Y  I+  Y ++       +++DEM +R   PD   Y  +I 
Sbjct: 319 AERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIY 378

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            L       EA   +  M    +   V+ YN     L +A +   +DE  Q
Sbjct: 379 ALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHK---VDEAKQ 426


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/475 (27%), Positives = 228/475 (48%), Gaps = 28/475 (5%)

Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
           T  P  +  + +++ +      ++E  L+     LS NLV  VL+R ++    A RFF W
Sbjct: 41  TLLPDLVNEISRLLSDHRYPHHDLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLW 100

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--LSMETFKIAMNAFAAA 292
           A   PGF H+  +++ ++ ILG  +QF  +   L EM E     ++ E F +   A++ A
Sbjct: 101 AKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAYSQA 160

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
                A+  F  M+++  K  +  ++ LL  L + K  K+AQ LF + K+RF+    TY+
Sbjct: 161 NLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAKTYS 220

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L+ GW  + +  +A  ++  M+++G   D++A+N +L+ L K G+  +A  +F  M +K
Sbjct: 221 ILISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSK 280

Query: 413 GPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIV 452
              P+  +Y+I I  +C                      N   Y C+I        ++  
Sbjct: 281 RVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEA 340

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           Y LL EM  RG  PD  +YNA+          + A+R+   M +    P  HTYNM++K 
Sbjct: 341 YQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKL 400

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMKA 571
             + G ++   +VW+ M+ +   P  ++Y+V+I G   +  +  EA KY E M+++G+  
Sbjct: 401 LIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPP 460

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF---EVSNVLA--RWAETTKNR 621
            V         L   G    ++ LA KMR S  +   E++N++   R A  T  R
Sbjct: 461 YVTTVEMLRNRLLGLGFIDHIEILAAKMRQSTSYAIQELANIMIGNRTAHNTLGR 515


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 211/405 (52%), Gaps = 33/405 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ME+ L   GI LS +L+   L R RH  + A  FF ++   P  + N+ TYN ++ IL +
Sbjct: 56  MESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFHYSLSLPSSSVNTTTYNLIIDILSK 115

Query: 258 ARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            RQF+    ++ +M +  L  +  TF I +    +A   ++A+  F+ M  +  +    T
Sbjct: 116 VRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLISAGFTRQAIRAFDDMESFIAETVNQT 175

Query: 317 INC-LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
             C LL+ L +    K A  +F+K K RF PN+  YTVL+ GWC++  +  A R   EM 
Sbjct: 176 HFCFLLDTLCKYGYIKVAVEVFNKRKFRFLPNVRIYTVLIYGWCKIGRIDMAERFIREMD 235

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRS----------DAIKLFEVMKAKGPSPNVRSYTIMI 425
           + G + +VV +N++L+G+ +  K             A K+F+ M+ KG  P+V S++I++
Sbjct: 236 EMGIEANVVTYNVLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGIEPDVTSFSILL 295

Query: 426 WKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             + + +                     A YT ++    +  R+D   +LL++M   G  
Sbjct: 296 HVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLCSCGRIDDAEELLEQMVRNGVS 355

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYEMGRK 524
           P+  TYN   K  + +K P+ A+++Y+++ +     P++HTYN+++  + +   + +  +
Sbjct: 356 PNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDPSVHTYNILLGMFMKLNRFNIVNE 415

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +W+++   G  PD +SYT+L+ GL  + +  +A ++  EM+EKG+
Sbjct: 416 IWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGL 460


>gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15200
 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 204/395 (51%), Gaps = 26/395 (6%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ++ +LD+CGI+L+  LV++V+ R R   +PA+        +     +S  YN ++ +LG+
Sbjct: 96  IKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVKQSVHLSSSMLYNEILDVLGK 155

Query: 258 ARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            R+FE    + +EM ++ G ++ +T+++ +N +AAA +  +AV +FE   ++     +  
Sbjct: 156 MRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVA 215

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            + LL  L R K  + A+ LF   +  F  ++    ++L GWC + N+ EA R W ++I 
Sbjct: 216 FHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIA 275

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC------- 429
              +PDVV++  M+  L K GK   A++L+  M     +P+V+    +I   C       
Sbjct: 276 SKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPE 335

Query: 430 -------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG--CPPDGLTYNAL 474
                          N   Y  L+      RR + V++L++EME +G  C P+ +T++ L
Sbjct: 336 ALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYL 395

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +K  +  K  D    + + M ++  + T   YN++ + Y Q    E  R++W EM R G 
Sbjct: 396 LKYSQRSKDVD---IVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGL 452

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            PD  +YT+ I GL ++ + GEA  Y +EM+ KGM
Sbjct: 453 GPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGM 487



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 143/336 (42%), Gaps = 39/336 (11%)

Query: 287 NAFAAAKERKKAVAIFELMNKYKF-----------KAGVD-TINCLLENLGRSKLPKEAQ 334
           N F   K+++ A+ +  ++  ++            K G+D T   +LE + R++   +  
Sbjct: 67  NRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPA 126

Query: 335 LLFDKLKHRFTPNLTT---YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            +  +L  + + +L++   Y  +L    +++   E  +V++EM  +    +   + ++L 
Sbjct: 127 YILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLN 186

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
                 K  +A+ +FE  K  G   ++ ++  ++   C+     +    T F +RRR   
Sbjct: 187 RYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFA--ETLFCSRRR--- 241

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
                    E GC  D    N ++    +     EA R +K+++ S  +P + +Y  ++ 
Sbjct: 242 ---------EFGC--DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMIN 290

Query: 512 SYFQTGNY----EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +  + G      E+ R +WD   RR   PD      +I  L  + R  EA +   E+ EK
Sbjct: 291 ALTKKGKLGKAMELYRAMWD--TRRN--PDVKICNNVIDALCFKKRIPEALEVFREISEK 346

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G    V+ YN     L +  R+  + EL ++M   G
Sbjct: 347 GPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKG 382



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 40/198 (20%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
            FR     G  P    N  TYNS++  L + R+ E +  ++EEM  KG  S     +  +
Sbjct: 339 VFREISEKGPDP----NVVTYNSLLKHLCKIRRTEKVWELVEEMELKGG-SCSPNDVTFS 393

Query: 288 AFAAAKERKKAVAI-FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                 +R K V I  E M K K +   D  N +                          
Sbjct: 394 YLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFR------------------------ 429

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                  L   W + + + E   +W+EM   G  PD   + I + GL   GK  +A+  F
Sbjct: 430 -------LYVQWDKEEKVRE---IWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYF 479

Query: 407 EVMKAKGPSPNVRSYTIM 424
           + M +KG  P  R+  ++
Sbjct: 480 QEMMSKGMVPEPRTEMLL 497


>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 149/536 (27%), Positives = 245/536 (45%), Gaps = 84/536 (15%)

Query: 116 STNVVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKST 175
           STN V  SL   + A +++  N V      S+   NQ  D    GN+ E  +      S 
Sbjct: 185 STNGVEESLNPEHRALDVVTRNGVE----ESLISVNQTFD-LVGGNDVEERVLV----SD 235

Query: 176 ADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235
           AD     ++ K I    + + +ME  LD  G+ L+ +LV+++L +     + AFRFF WA
Sbjct: 236 AD-----KLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWA 290

Query: 236 GDKPGFAHNSRTYNSMMSILG----RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291
           G +  ++H  R YN M+ IL     + +QF  +  ML+ M                    
Sbjct: 291 GHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYM-------------------- 330

Query: 292 AKERKKAVAI---FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
            +  KK+V +     ++ KY  K         L    + K          K++ +  P +
Sbjct: 331 KRNDKKSVPVEVLLMILRKYTEKHLAH-----LHKFAKKK----------KIRVKTQPEI 375

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
               +LL   C  KN     RV  EMI+ G  PD   +N  ++   K G  ++A +LFE 
Sbjct: 376 NALNLLLDALC--KNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEF 433

Query: 409 MKAKGP---SPNVRSYTIMI------------WKFCKQ--------NAAVYTCLITGFGN 445
           M+ KG    SP  ++Y IMI            +K  K         + + Y  +I G   
Sbjct: 434 MRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCL 493

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             +++  Y  L+EM  +G  PD +TYN  + ++   K  +EA+ +Y  M+ +G  P++HT
Sbjct: 494 AGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHT 553

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +NM++  +F+ G  +   + W EM +RGC  D ++Y V+I GL + ++  +A   L+E++
Sbjct: 554 FNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVV 613

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
            KG+K P   ++ F   LS  G    + +L++ MR   KF    +  R+A   K R
Sbjct: 614 NKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMR---KFYNPAMARRFALNQKRR 666


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 227/482 (47%), Gaps = 30/482 (6%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  +  + +++ +      ++E  L+     +S NLV  VL+R  +    A RFF WA  
Sbjct: 44  PDLVNEISRLLSDHRYPHHDLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKS 103

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKER 295
            PGF H+  +++ ++ ILG  +QF  +   L EM       ++ E F +   A++ A   
Sbjct: 104 IPGFQHSVMSFHILVEILGSCKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQANLP 163

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             A+  F  M+++  K  ++  + LL  L ++K  K+AQ  FD+ K+RF     TY++L+
Sbjct: 164 DGAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILI 223

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GW  + +  +A  ++  M+++G   D++A+N +L+ L K G   +A  +F  M +K   
Sbjct: 224 SGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVE 283

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y+I I  +C                      N   Y C+I        ++  Y L
Sbjct: 284 PDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLL 343

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM  RG  PD  +YNA+          + A+R+   M +    P  HTYNM++K   +
Sbjct: 344 LDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIR 403

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMKAPVL 574
            G ++   KVW  M  +   P  ++Y+V+I G   +  +  EA KY E M+++G+   V 
Sbjct: 404 IGRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVT 463

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKF---EVSNVLARWAETTKNRVYRKDR--IE 629
                   L   G    ++ LA KMR S  +   E++N++      T +   R+D   IE
Sbjct: 464 TVEMLRNQLLGLGFLDHIEILAAKMRQSTSYAIQELANIMI--GNRTTHNTLRRDEMDIE 521

Query: 630 TD 631
           +D
Sbjct: 522 SD 523


>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
          Length = 520

 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 216/457 (47%), Gaps = 42/457 (9%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG-- 256
           +A LD  G  L+  LV DVL R R+  + AFRFF WA  + G+ H   TYN ++ IL   
Sbjct: 65  KAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYNHEPTTYNDIIDILSGT 124

Query: 257 --RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK--- 311
             ++RQF  + ++L+ M   G  S+    + +    A  E K    + +L  K + +   
Sbjct: 125 RYKSRQFGVLCNVLDHMKRHGSRSVPVEDL-LEILRAYTE-KHLTHMRKLAKKRRVRMRT 182

Query: 312 -AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               D +N LL+   +  + KEA+ +F ++K +   N  TY+ L  GWCR ++  +A +V
Sbjct: 183 PPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKV 242

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---PSPNVRSYTIMIWK 427
             EMI     P+   +   +      G  S+A +LFE M+ +G    SP  ++Y+IMI  
Sbjct: 243 LEEMIQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVA 302

Query: 428 F--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                                C  +   Y  LI G     ++D  Y +L EM   G PPD
Sbjct: 303 LAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPD 362

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN  + +    +  D+A+ + + M+ +  +P++HTYNM+M  +F+ G       +  
Sbjct: 363 IVTYNCFLNVFCSHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDICL 422

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLS 584
           EM +R C    ++Y ++I GL     +  A   L+E++ + MK   L Y KF A    LS
Sbjct: 423 EMDKRRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMK---LSYKKFDAIMLRLS 479

Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
             G    +  L++ MR   KF    +  R+A T K +
Sbjct: 480 DVGNLGAIHRLSEHMR---KFYNVAMARRFAITQKKK 513


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 232/485 (47%), Gaps = 35/485 (7%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  +  + +++ +      ++E  L      +S +LV  VL+R  H    A RFF WA  
Sbjct: 40  PELVNEISRIVSDHRHPRHDLELSLTPFSTQISTDLVEQVLKRCNHLGFSAHRFFLWAKS 99

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKE 294
            PGF H+ ++++ ++ ILGR++QF  +   L E  E      ++ E F I   A++ A  
Sbjct: 100 IPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADL 159

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
              A+  F  M+++  K  +  ++ LL  L + K  ++AQ  FD++K  F     TY++L
Sbjct: 160 PDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTKTYSIL 219

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + GW ++ +  +A  +++ M+++G   D++A+N +LE L K G   +A+     M +K  
Sbjct: 220 INGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKV 279

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+  +Y+I I  +C                      N   Y C+I      ++++  Y 
Sbjct: 280 EPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQ 339

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LL EM   G  PD  +YNA+          + A+++   M +    P  HTYNM++K   
Sbjct: 340 LLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLI 399

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMKAPV 573
           + G ++   +VW+ M  +   P  ++Y+V+I GL  +  +  EA KY   M+++G+    
Sbjct: 400 RIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLCKKKGKLEEACKYFAMMIDEGIPPYD 459

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGKF---EVSNVL--ARWAETTKNRVYRKDR- 627
                    L   G    ++ LA KMR S      E++N++  AR A+ T    +R+D  
Sbjct: 460 TTIEMLRNRLLGLGLLDNIEILAAKMRQSTSCSIQELANIMIGARSAQNT----WRRDES 515

Query: 628 -IETD 631
            IE+D
Sbjct: 516 DIESD 520


>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
          Length = 524

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 206/427 (48%), Gaps = 24/427 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L+E G+ +S   V DVL+    A   A +FF W+G K    H+   +N ++ +LG+
Sbjct: 91  VENALNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHSPLAWNLLVDLLGK 150

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            + F+ M   ++ M  +G++SMET       +  A +  +A   F+++ +Y     V  +
Sbjct: 151 EKLFDAMWDCIKVMKNQGIVSMETMSSVFGNYVQAGKVAEARMTFDVIEQYGCPQDVVAL 210

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           NC L    R K  KEA   FDK+K +  P+  TY +LL G     N+ +A   + EMI +
Sbjct: 211 NCFLSAFCRYKQSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGNVSKARTTFGEMIIR 270

Query: 378 -GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY--TIMI-------- 425
            G+ P +  A+N  L  L+   +  +A+K   VMK +   P++  +  T+ I        
Sbjct: 271 HGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFFRNTLQILYQRKDTK 330

Query: 426 -----WKFCKQNAAV-----YTCLITGF--GNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                W+  KQ+  +     Y  +I  F   N  ++D  Y LL EM   G  PD  TYN 
Sbjct: 331 NAYGLWELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVFTGIFPDFKTYNT 390

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           + + +   +  +EA  I++EM ++ F P    Y M +K YF+  + EM   +W  MI++ 
Sbjct: 391 IFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAVMMWKHMIQKA 450

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             P  +   +LI G     R+ EA KY  E + +G++ PV    K      +AG+     
Sbjct: 451 IFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKLKNASRQAGKQDAYG 510

Query: 594 ELAQKMR 600
           +L +KM+
Sbjct: 511 QLEKKMK 517


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 200/408 (49%), Gaps = 39/408 (9%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E+  +++ +  S    +E  L+E G+ L   L+  VL R   A    +RFF WA  +P
Sbjct: 75  DVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQP 134

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
            + H+   Y SM+ IL + RQF  +  ++EEM ++   L+  E F + +  FA+A   KK
Sbjct: 135 RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK 194

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ + + M K+ F+       CLL+ L +    K+A  LF+ ++ R              
Sbjct: 195 AIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR-------------- 240

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              V  +MEA  V  +M + GF+PD+V +  +L G    GK +DA  L   M+ +G  PN
Sbjct: 241 ---VGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPN 297

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
              YT++I   CK                     +   YT L++GF    ++D  Y +L 
Sbjct: 298 ANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLD 357

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M ++G  P  LTY  ++   + ++  +E + + ++M +  + P I  YN++++   + G
Sbjct: 358 DMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLG 417

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +   ++W+EM   G  P  +++ ++I GL SQ    EA  + +EML
Sbjct: 418 EVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEML 465



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 23/186 (12%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-------------KL---- 477
           ++  L+  F +   +    ++L EM + G  PD   +  L+             KL    
Sbjct: 178 LFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM 237

Query: 478 -MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            M++ KM  EA  +  +M  +GF+P I  Y  ++  Y   G       +  +M RRG  P
Sbjct: 238 RMRVGKMM-EAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEP 296

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVL 592
           + N YTVLI  L   DR  EA K   EM     +A V+ Y    +   + G+      VL
Sbjct: 297 NANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVL 356

Query: 593 DELAQK 598
           D++ +K
Sbjct: 357 DDMIKK 362


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 190/384 (49%), Gaps = 26/384 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++ +LV+ VL+R R   +PA+ FF W   +   + +S  YN ++ ILGR R+FE +  +L
Sbjct: 1   MTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVL 60

Query: 269 EEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           +EM ++ G +  +T+++ +N +A A   ++A+  F    +   +  + +   LL  L R 
Sbjct: 61  DEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRY 120

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           K    A+ L     H F  ++ T  ++L GWC + N+ EA R W ++I    KPDV  + 
Sbjct: 121 KHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYG 180

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
             ++ L   GK   A+KL+E M      P+V     +I   C +                
Sbjct: 181 TFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKER 240

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPDGLTYNALIKLMKIQKMPD 485
               N A Y  LI       RM+ VY+LL EM+E+   C PD +T+N L+K +   K P+
Sbjct: 241 GCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSL---KKPE 297

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           E   + + M  +G K    T N+++K +    + E  R  W+EM + G   D  SYT++I
Sbjct: 298 EVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMI 357

Query: 546 GGLISQDRSGEAYKYLEEMLEKGM 569
             L  + R  +A +Y  EM  KGM
Sbjct: 358 HWLYDKGRVEDALRYFGEMENKGM 381



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA R +K+++ S  KP + TY   +K+    G      K+++ M +  C PD      +I
Sbjct: 159 EAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVI 218

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             L  + R  EA    E M E+G    V  YN     + + GR   + EL  +M+
Sbjct: 219 DALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQ 273


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 192/389 (49%), Gaps = 21/389 (5%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           LD  G  +S++LV+ VL+RF +    A+ FF WA  +  + H+   YN M+ ILG+A++F
Sbjct: 168 LDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEF 227

Query: 262 ETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           + M  +++EM   +G + ++T    M  FA A+  + AV  F  M KY  +     +N L
Sbjct: 228 DLMWKLVKEMKRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKL 287

Query: 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           L+ L + +  + A  + D+ K     +  ++ +L+ GWC+V+N  +A +V  E  + GF+
Sbjct: 288 LDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFE 347

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
           PDV  +N  +E            ++ E M+  G  PN  +YTI++  + K          
Sbjct: 348 PDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEE 407

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      +   Y+ L+   G   R+    ++  +M ++G   D +TYN +I     
Sbjct: 408 YERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACA 467

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
               + A+R+ KEM  +  KP + TY+ ++K   +    ++ + + D M +   CPD  +
Sbjct: 468 HSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGT 527

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           YT+L+  L +  +  EA  + EEM+ KG 
Sbjct: 528 YTLLVQSLSNSGKLVEACTFFEEMVSKGF 556



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 134/336 (39%), Gaps = 59/336 (17%)

Query: 217 VLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           V+ RF  A+R   A   F   G K G   ++   N ++  L + +  E   ++L+E    
Sbjct: 252 VMRRFAKAQRHEDAVEAFRGMG-KYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKSS 310

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
             LS  +F I +N +   +  +KA  + E   ++ F+  V T N  +E+    K  ++  
Sbjct: 311 VPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVD 370

Query: 335 LLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEA-------------------------- 367
            + ++++ +   PN  TYT+LL G+ +   L +A                          
Sbjct: 371 EVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYIL 430

Query: 368 ---GR------VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
              GR      V+++M  +G   DVV +N M+       K   A++L + M+     P++
Sbjct: 431 GKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDL 490

Query: 419 RSYTIM-----------IWKFCKQNA---------AVYTCLITGFGNRRRMDIVYDLLKE 458
           ++Y  +           + KF   +            YT L+    N  ++       +E
Sbjct: 491 QTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEE 550

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           M  +G  P   T   L + ++I+ M  E  +I + M
Sbjct: 551 MVSKGFTPMETTVKLLTRKLEIKSMLKEKDQIEELM 586


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 194/387 (50%), Gaps = 23/387 (5%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
            I +S NLV  +L RF+   + A   F WA  + G+ H    Y+ M+ ILG+ +Q + M 
Sbjct: 73  AIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMR 132

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +++EEM +  L+ + T   AM   A A E + AV +F+ +  ++ +   +++N LL+ L 
Sbjct: 133 ALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLC 192

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           + +  ++A+ +F +LK   +PN  T+ + + GWC+   + EA     EM   G +P V++
Sbjct: 193 KERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVIS 252

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----------------- 428
           ++ +++   +        +L + M+A+G +PNV +YT ++                    
Sbjct: 253 YSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMR 312

Query: 429 ---CKQNAAVYTCLITGFGNRRRM-DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
              CK +   Y  LI   G   ++ + V     EM + G PP+  TYN++I +       
Sbjct: 313 SVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQE 372

Query: 485 DEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI-RRGCCPDDNSYT 542
            +A+ + +E+  S F KP I TY  ++KS F+TG  +      D+M+ +     D ++YT
Sbjct: 373 QKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYT 432

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +LI GL   ++    Y   EEM+ K +
Sbjct: 433 LLIHGLCRANKCEWGYNLFEEMVGKAI 459



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 59/306 (19%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           N+ + N ++  L + R+ E   ++  E+      +  TF I ++ +  A    +A    +
Sbjct: 180 NTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQ 239

Query: 304 LMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
            M  +  +  V + + ++++  R S   K  +LL D       PN+ TYT ++    +V+
Sbjct: 240 EMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVE 299

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV-MKAKGPSPNVRSY 421
              EA ++   M   G KPD + +N ++  L + G+  +A+++FEV M   G  PN  +Y
Sbjct: 300 QFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTY 359

Query: 422 TIMIW---------------------KFCKQN---------------------------- 432
             MI                       FCK +                            
Sbjct: 360 NSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMV 419

Query: 433 --------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                    + YT LI G     + +  Y+L +EM  +   P   T   L+  +K + M 
Sbjct: 420 NKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRYKTCALLLDEIKQKNMH 479

Query: 485 DEAVRI 490
           D A RI
Sbjct: 480 DAAERI 485



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 16/192 (8%)

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G+  DA+++F+ +       N  S  +++   CK+               R+++    + 
Sbjct: 160 GEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKE---------------RKVEQARAIF 204

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            E++     P+  T+N  I         DEA    +EM   G +P + +Y+ I++SY + 
Sbjct: 205 LELKPH-ISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQ 263

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            N+    ++ D+M  +GC P+  +YT ++  L   ++  EA +  E M   G K   L Y
Sbjct: 264 SNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFY 323

Query: 577 NKFAADLSRAGR 588
           N     L RAG+
Sbjct: 324 NALIHTLGRAGQ 335



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGL 276
           +E+F  A + A R     G KP    ++  YN+++  LGRA Q    V + E EM + G+
Sbjct: 298 VEQFEEALQIAERMRS-VGCKP----DTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGV 352

Query: 277 L-SMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEA 333
             +  T+   +  F    + +KA+ +  E+ N    K  + T   +L++  ++ K+   +
Sbjct: 353 PPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLS 412

Query: 334 QLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
             L D + KH  + +++ YT+L+ G CR         ++ EM+ K   P      ++L+ 
Sbjct: 413 NFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRYKTCALLLDE 472

Query: 393 LLKIGKRSDAIKLFEVM 409
            +K     DA +  EV 
Sbjct: 473 -IKQKNMHDAAERIEVF 488



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           + N L+  +  ++  ++A  I+ E+ +    P  HT+N+ +  + +    +       EM
Sbjct: 183 SMNLLLDTLCKERKVEQARAIFLEL-KPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEM 241

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              GC P   SY+ +I     Q    + Y+ L++M  +G    V+ Y      L++  + 
Sbjct: 242 KGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQF 301

Query: 590 YVLDELAQKMRFSG 603
               ++A++MR  G
Sbjct: 302 EEALQIAERMRSVG 315


>gi|361070031|gb|AEW09327.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139485|gb|AFG50982.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139486|gb|AFG50983.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139487|gb|AFG50984.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139488|gb|AFG50985.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139490|gb|AFG50987.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139491|gb|AFG50988.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139492|gb|AFG50989.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
 gi|383139493|gb|AFG50990.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
          Length = 164

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 119/179 (66%), Gaps = 15/179 (8%)

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           +  L K+ K  +A K F  M+  G SP               +AAVYTCLITG+GN++++
Sbjct: 1   IRALSKLQKMEEASKFFAEMQEHG-SP--------------LDAAVYTCLITGYGNKKKL 45

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  Y LL+EM+E+G   D  TYNALIK+M I   PDEA ++++EM + GF+PTIHTYNM+
Sbjct: 46  DKAYGLLQEMKEKGIRHDCRTYNALIKVMMILHKPDEATKLFEEMSQCGFQPTIHTYNMM 105

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           MK YF+  N EMG  +WD+M R GCCPD NSYTV IGGLI + RS EA   +E M++KG
Sbjct: 106 MKLYFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 2/161 (1%)

Query: 255 LGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + ++ E       EM E G  L    +   +  +   K+  KA  + + M +   +  
Sbjct: 4   LSKLQKMEEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHD 63

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
             T N L++ +     P EA  LF+++    F P + TY +++  + R +N      +W+
Sbjct: 64  CRTYNALIKVMMILHKPDEATKLFEEMSQCGFQPTIHTYNMMMKLYFRARNPEMGFAIWD 123

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           +M   G  PDV ++ + + GL++ G+  +A    E M  KG
Sbjct: 124 QMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 327 SKLPK--EAQLLFDKLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           SKL K  EA   F +++   +P +   YT L+ G+   K L +A  +  EM +KG + D 
Sbjct: 5   SKLQKMEEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHDC 64

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             +N +++ ++ + K  +A KLFE M   G  P + +Y +M+  + +             
Sbjct: 65  RTYNALIKVMMILHKPDEATKLFEEMSQCGFQPTIHTYNMMMKLYFRA------------ 112

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
              R  ++ + +  +M   GC PD  +Y   I  +  +   +EA    + M+  G
Sbjct: 113 ---RNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++  Y  +++  G  ++ +    +L+EM EKG+     T+   +       +  +A  +F
Sbjct: 28  DAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHDCRTYNALIKVMMILHKPDEATKLF 87

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           E M++  F+  + T N +++   R++ P+    ++D++ ++   P++ +YTV +GG  R 
Sbjct: 88  EEMSQCGFQPTIHTYNMMMKLYFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIRE 147

Query: 362 KNLMEAGRVWNEMIDKG 378
               EA      MIDKG
Sbjct: 148 GRSEEACACIESMIDKG 164



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L K+QKM +EA + + EM   G       Y  ++  Y      +    +  EM  +G   
Sbjct: 4   LSKLQKM-EEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRH 62

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           D  +Y  LI  ++   +  EA K  EEM + G +  +  YN
Sbjct: 63  DCRTYNALIKVMMILHKPDEATKLFEEMSQCGFQPTIHTYN 103


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 192/418 (45%), Gaps = 27/418 (6%)

Query: 209 LSHNLVVDVLERFRHARR--PAFR---FFCWAGDKPGFAHNSRTYNSMMSILGRARQFET 263
           +S +LV  V+E+    R   P F+   FF WA  +PGF H+   YN M+ + G+ R F+ 
Sbjct: 101 VSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDL 160

Query: 264 MVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
              +++ M  + + +S+ETF I +  +  A    +AV  F  M  Y  K      + L+ 
Sbjct: 161 GWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILIS 220

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            L R +   EAQ  FD LK +F P++  YT L+ GWCR  N+ EA RV+ EM   G  P+
Sbjct: 221 ILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPN 280

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN--------------------VRSYT 422
           V  + I+++ L + G+ + A  +F  M   G  PN                    ++ Y 
Sbjct: 281 VYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYN 340

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
            M    C  +   Y  LI        +D    +L  M ++GC P+  T+N L   +   +
Sbjct: 341 QMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLR 400

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             + A R+Y +M     K    TYN++M+ +  T + +M  K+  EM      P+ N+Y 
Sbjct: 401 DVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYC 460

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
           VLI           AYK+  EM+E+    P L  Y K    L +AG+    +EL   M
Sbjct: 461 VLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVM 518



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 107/226 (47%), Gaps = 16/226 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           GF      +N M++   K+       ++ ++MKA+    ++ +++I+I ++ +  A + +
Sbjct: 137 GFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVR--AGLAS 194

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
             +  F NR            ME+  C PD + ++ LI ++  ++   EA   +  + + 
Sbjct: 195 EAVHAF-NR------------MEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSL-KD 240

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            F+P +  Y  +++ + + GN     +V+ EM   GC P+  +YT++I  L    +   A
Sbjct: 241 KFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRA 300

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +    EML+ G +   + +N       +AGR+  + ++  +M+  G
Sbjct: 301 HDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMG 346


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 48/424 (11%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           R++E V    +   +       +L+ CG   S  +VV VL R R++   A   F WA  +
Sbjct: 79  RDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLARLRNSCAAAHAAFRWASAQ 138

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           PG+A     Y+SM++IL + R+F+   ++L++M    L S     + +  + AA++   A
Sbjct: 139 PGYAPGRHAYHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGA 198

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           VA F  +    F+ GV   + LL  L R K  ++A+ L    +  F     ++ V+L GW
Sbjct: 199 VAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNVVLNGW 258

Query: 359 CR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C  V+++ EA R WN M  KG K DVV++  M+    K G     +KLF  MK  G  P+
Sbjct: 259 CNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVVPD 318

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            + Y          NA VY          R ++    L++ MEE+G  PD  T+N+LI+ 
Sbjct: 319 RKIY----------NAVVY-----ALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRP 363

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYN------------------------------ 507
           +   +   EA ++  +M+  G  P++ T++                              
Sbjct: 364 LCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDVARSPIEVFDLLDKMKELQCDPEMDT 423

Query: 508 --MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
             M+++ + +   ++   K+W  M   G  PD ++Y VLI GL    R  E+ KY EEM 
Sbjct: 424 FIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMK 483

Query: 566 EKGM 569
            KG 
Sbjct: 484 AKGF 487



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   + + YN+++  L + R      +++  M EKG+     TF   +     A++ ++A
Sbjct: 314 GVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEA 373

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             + + M        V T + LL ++ RS  P E   L DK+K  +  P + T+ +L+  
Sbjct: 374 RKMLDDMLGRGLSPSVRTFHALL-DVARS--PIEVFDLLDKMKELQCDPEMDTFIMLIRK 430

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR +      ++W+ M   G  PD  A+ +++ GL   G+  ++ K +E MKAKG  P 
Sbjct: 431 FCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPPE 490

Query: 418 VRS-YTIMIW 426
            ++   I  W
Sbjct: 491 KKTEEMIQAW 500



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 50/277 (18%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  G    + +L  L + +   +A+ L D+++     +     +L+  +C  +++  A  
Sbjct: 141 YAPGRHAYHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAVA 200

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
            +  +   GF+P V   + +L  L +     DA  L    + + P    +S+ +++  +C
Sbjct: 201 AFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPF-ETKSFNVVLNGWC 259

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
               +V                                                  EA R
Sbjct: 260 NMVRSVR-------------------------------------------------EAKR 270

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            +  M   G K  + +Y  ++  + + G+ +   K+++ M   G  PD   Y  ++  L 
Sbjct: 271 FWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVVPDRKIYNAVVYALA 330

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
                 EA   +  M EKG+      +N     L +A
Sbjct: 331 KGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKA 367


>gi|383139489|gb|AFG50986.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
          Length = 164

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 119/179 (66%), Gaps = 15/179 (8%)

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           +  L K+ K  +A K F  M+  G SP               +AAVYTCLITG+GN++++
Sbjct: 1   IRALSKLQKMEEASKFFAEMQEHG-SP--------------LDAAVYTCLITGYGNKKKL 45

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  Y LL+EM+E+G   D  TYNALIK+M I   PDEA ++++EM + GF+PTIHTYNM+
Sbjct: 46  DKAYGLLQEMKEKGIRHDCRTYNALIKVMMILHKPDEATKLFEEMSQYGFQPTIHTYNMM 105

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           MK YF+  N EMG  +WD+M R GCCPD NSYTV IGGLI + RS EA   +E M++KG
Sbjct: 106 MKLYFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 2/161 (1%)

Query: 255 LGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + ++ E       EM E G  L    +   +  +   K+  KA  + + M +   +  
Sbjct: 4   LSKLQKMEEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHD 63

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
             T N L++ +     P EA  LF+++ ++ F P + TY +++  + R +N      +W+
Sbjct: 64  CRTYNALIKVMMILHKPDEATKLFEEMSQYGFQPTIHTYNMMMKLYFRARNPEMGFAIWD 123

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           +M   G  PDV ++ + + GL++ G+  +A    E M  KG
Sbjct: 124 QMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 327 SKLPK--EAQLLFDKLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           SKL K  EA   F +++   +P +   YT L+ G+   K L +A  +  EM +KG + D 
Sbjct: 5   SKLQKMEEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHDC 64

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             +N +++ ++ + K  +A KLFE M   G  P + +Y +M+  + +             
Sbjct: 65  RTYNALIKVMMILHKPDEATKLFEEMSQYGFQPTIHTYNMMMKLYFRA------------ 112

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
              R  ++ + +  +M   GC PD  +Y   I  +  +   +EA    + M+  G
Sbjct: 113 ---RNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++  Y  +++  G  ++ +    +L+EM EKG+     T+   +       +  +A  +F
Sbjct: 28  DAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRHDCRTYNALIKVMMILHKPDEATKLF 87

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           E M++Y F+  + T N +++   R++ P+    ++D++ ++   P++ +YTV +GG  R 
Sbjct: 88  EEMSQYGFQPTIHTYNMMMKLYFRARNPEMGFAIWDQMARNGCCPDVNSYTVFIGGLIRE 147

Query: 362 KNLMEAGRVWNEMIDKG 378
               EA      MIDKG
Sbjct: 148 GRSEEACACIESMIDKG 164



 Score = 39.3 bits (90), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L K+QKM +EA + + EM   G       Y  ++  Y      +    +  EM  +G   
Sbjct: 4   LSKLQKM-EEASKFFAEMQEHGSPLDAAVYTCLITGYGNKKKLDKAYGLLQEMKEKGIRH 62

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           D  +Y  LI  ++   +  EA K  EEM + G +  +  YN
Sbjct: 63  DCRTYNALIKVMMILHKPDEATKLFEEMSQYGFQPTIHTYN 103


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 204/415 (49%), Gaps = 21/415 (5%)

Query: 176 ADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235
           A   +I+RV +++ + +    ++   L++CG+N ++NL+  +L RF +   PA   F WA
Sbjct: 96  AQVSDIDRVSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWA 155

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKE 294
             + G+ H    Y+ M+ ILGR ++F  M  +++EM   +G +S+ T K  M   A A  
Sbjct: 156 KHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGN 215

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            + AV  F  + K   +  ++ +N L++ L +    + A   F + K     +  ++ +L
Sbjct: 216 FQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNIL 275

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G+C+ + L +A ++ +EM  +GF+P+VV++   +E   K+    +   +F  M+ K  
Sbjct: 276 LHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSC 335

Query: 415 SPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYD 454
            PNV +YTI +                       C  +A+ Y+ LI       R+   +D
Sbjct: 336 KPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWD 395

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           + ++M+++G  PD LTYN +I         + A+++ + M     KP I TY  ++K   
Sbjct: 396 VFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCC 455

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    ++ + + + M +     D  +Y +L+GGL    +   A  + EEM+ KG+
Sbjct: 456 RKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGL 510


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 210/435 (48%), Gaps = 22/435 (5%)

Query: 156 GECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVV 215
            E   ++  S++     K T D  +I+++ +++    S    +   L  CG+++S +LV 
Sbjct: 65  AENQKHDHRSKVDGYVLKETID-SDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVE 123

Query: 216 DVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-K 274
            VL+RF +   PAF FF WA  + G+ H+  +YNSM+ ILG+ ++F+ M  ++EEM    
Sbjct: 124 QVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLG 183

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
           G +S+ T    M   A A   K A+  F  M ++  K     +N L++ L +    + A 
Sbjct: 184 GYVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHAN 243

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            +F + K     N  T+ VL+ GWC+ + +  A +   EM + GF PDV+++  ++E   
Sbjct: 244 DVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYC 303

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAA 434
           +         +   M+ KG  PNV +YTI++                       C  + +
Sbjct: 304 REKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTS 363

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y+ LI       R+    D+ ++M ++G  PD LTYN +I    +    ++A+++  +M
Sbjct: 364 FYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKM 423

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             S  KP ++TY+ ++K   +    ++   + + M +     +  +Y++L+ GL    + 
Sbjct: 424 EESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKL 483

Query: 555 GEAYKYLEEMLEKGM 569
             A  + EEM+ KG+
Sbjct: 484 EHACLFFEEMVSKGL 498



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 37/214 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  +  +Y S++    R + F  + S+L EM EKG   ++ T+ I M+A    KE  KA
Sbjct: 287 GFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKA 346

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT------------- 345
           + ++E M            + L+  L ++   K+A+ +F+ +  +               
Sbjct: 347 LEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISA 406

Query: 346 -----------------------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                                  P+L TY+ LL   CR   +     + N M       +
Sbjct: 407 ACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLE 466

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           V  +++++ GL K GK   A   FE M +KG  P
Sbjct: 467 VGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLVP 500


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 200/428 (46%), Gaps = 21/428 (4%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           + +   +++   F+    +   +D C + +S  +V  +L RF      AF FF WAG + 
Sbjct: 95  DFDEASRILTSCFASPEAIVIAMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQE 154

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G+ H++ +YNSM+ ILG+ +QF+ M  ++ +M E  GL+S+ T    M   A A     A
Sbjct: 155 GYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDA 214

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M+++        +N LL+ L + +  K A+  F +L+    P+ +++  L+ GW
Sbjct: 215 IDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGW 274

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ + + EA  +  EM + GFKP V+ +  ++E             +   M++KG  PNV
Sbjct: 275 CKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNV 334

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++                       C  +A+ Y  LI   G   R++    ++ +
Sbjct: 335 ITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDK 394

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  P   T+N LI         + A+++  +M     KP I TY  ++K   +   
Sbjct: 395 MRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQW 454

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            ++ R +   M R+   PD ++YT+L+  L    +  ++  +LEEM+ KG       ++ 
Sbjct: 455 IKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAPKKETFDL 514

Query: 579 FAADLSRA 586
            A  L +A
Sbjct: 515 VAEKLDKA 522



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 18/205 (8%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +DAI  F  M   G   +  +  +++   CK+ +            R R           
Sbjct: 212 TDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSV----------KRARGAF-------Q 254

Query: 460 EERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           E RG  PPD  ++N L+      +M +EA  + KEM   GFKP++ TY  ++++Y    +
Sbjct: 255 ELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKD 314

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++    + +EM  +GC P+  +YT+++  L    R+ EA    +++   G       YN 
Sbjct: 315 FQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNS 374

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
               L RAGR    + +  KMR +G
Sbjct: 375 LIYILGRAGRLEDANSVVDKMRMTG 399


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 197/388 (50%), Gaps = 24/388 (6%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           GI+LS NL+  +L R++   + A   F WAG    F H+ ++Y+ M+ ILGR +  + M 
Sbjct: 81  GIHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMR 140

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            +LEEM ++ L+++ T    M  F  A++ K AV IF+ +     +   +++N LL+ L 
Sbjct: 141 EILEEMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLC 200

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           + K  ++A+ ++ +LKH   PN  T+ +L+ GWC ++ + EA     EM   G +P V++
Sbjct: 201 KEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVIS 260

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW------KF----------- 428
           ++ +++   +         L + M+A+  SPNV +YT ++       KF           
Sbjct: 261 YSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMN 320

Query: 429 ---CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQKMP 484
              C+ +   +  LI   G   R+D    + K  M +    P+  TYN++I +       
Sbjct: 321 AVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQE 380

Query: 485 DEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYEMG-RKVWDEMIRR-GCCPDDNSY 541
           + A  I KEM +SG  KP I TY+ ++KS F+    +     + ++M+ +     D ++Y
Sbjct: 381 ERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDLSTY 440

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           T+LI GL   DR   A+   EEM ++ +
Sbjct: 441 TLLIHGLYRADRCKWAFDLFEEMADQDI 468



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 18/195 (9%)

Query: 396 IGKRS--DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
           +G R   DA+++F+ ++  G   N  S  +++   CK+           F  + R   +Y
Sbjct: 165 VGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCKEK----------FVEQARE--IY 212

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
             LK        P+  T+N LI      +  +EA    +EM   G +P + +Y+ I++ Y
Sbjct: 213 LELKHY----IAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCY 268

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            Q  N++    + DEM  + C P+  +YT ++  L   ++  EA + +E M   G +   
Sbjct: 269 CQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMNAVGCRPDT 328

Query: 574 LDYNKFAADLSRAGR 588
           L +N     L RAGR
Sbjct: 329 LFFNSLIYTLGRAGR 343



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +Y++++    + + F+ +  +L+EM  +    ++ T+   M A A A++ ++A+ + E M
Sbjct: 260 SYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERM 319

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKN 363
           N    +      N L+  LGR+    +A  +F     K    PN +TY  ++  +C    
Sbjct: 320 NAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQ 379

Query: 364 LMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
              A  +  EM   G  KPD+  ++ +++   K+  R     L +++     +  V  Y 
Sbjct: 380 EERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKM--REIDTWLNDIL-----NDMVNKYH 432

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           I +      + + YT LI G     R    +DL +EM ++   P   T   L+  +K + 
Sbjct: 433 IGL------DLSTYTLLIHGLYRADRCKWAFDLFEEMADQDIVPRYKTCRLLLDEVKQKN 486

Query: 483 MPDEAVRI 490
           M    V+I
Sbjct: 487 MHLAVVKI 494


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 207/438 (47%), Gaps = 37/438 (8%)

Query: 167 ITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARR 226
           +  V+   TAD  E+ R+       F    +   +L   G++LS  L+V +L R R A +
Sbjct: 36  LPPVAPSPTAD--ELARLLLAHHNPFHPSESPLQLLSGGGVSLSQGLLVQILLRLRGASK 93

Query: 227 PAFRFFCWAGDKPGFAH--NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI 284
            A          P  +   N+  Y++++  LGRA QF+    ++ E    G  +  TF +
Sbjct: 94  LALSLLNAVRLHPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAV 153

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFK-AGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343
               + AA   ++AV  F+ M  +  +         LL+ L + K PK A  +F+K K++
Sbjct: 154 LARRYVAAGLTRQAVRAFDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYK 213

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL-----LKIGK 398
           + PN   YT+L+ GWC+V     A +   +MID G +P++V +NI+L G+     L    
Sbjct: 214 YEPNEKMYTILIYGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDN 273

Query: 399 RSD-----AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------A 433
           R D     A  L + M  +G  P+V SY+I++  + + +                     
Sbjct: 274 RFDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTV 333

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
           A YT +I    +  R++    LL EM   G  P   TYN   K  + +K    A+ +Y +
Sbjct: 334 ATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNK 393

Query: 494 MVR--SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           M    S   P IH+YN+++  + +   +E   ++W++M  R   PD +SYT+L+ G  ++
Sbjct: 394 MKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAK 453

Query: 552 DRSGEAYKYLEEMLEKGM 569
           ++  EA ++  EM+EKG 
Sbjct: 454 EKWREACQFFMEMIEKGF 471



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 27/277 (9%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            D  + +++ LGR+     A  L  +          T+ VL   +       +A R +++
Sbjct: 114 ADAYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGLTRQAVRAFDD 173

Query: 374 M-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           M    G +PD      +L+ L K      A+++F   K K   PN + YTI+I+ +CK N
Sbjct: 174 MEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKY-EPNEKMYTILIYGWCKVN 232

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQK 482
                          R D+    LK+M + G  P+ +TYN L+  +          +  +
Sbjct: 233 ---------------RSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDR 277

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             + A  + KEM   G +P + +Y++I+  Y +    E+   ++  M  RG CP   +YT
Sbjct: 278 TVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYT 337

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            +I  L S  R  +A   L EM+ +G+      YN F
Sbjct: 338 SVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCF 374



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 4/182 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  +Y+ ++ +  RA + E  + M   M ++G+  ++ T+   +   A+    + A
Sbjct: 293 GIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDA 352

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP---NLTTYTVLL 355
            ++   M          T NC  +     K    A  L++K+K   +P   ++ +Y +LL
Sbjct: 353 ESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKMKAPCSPTAPDIHSYNILL 412

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G + ++        +WN+M ++   PD+ ++ +++ G     K  +A + F  M  KG  
Sbjct: 413 GMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFMEMIEKGFL 472

Query: 416 PN 417
           P 
Sbjct: 473 PQ 474



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      TY S++  L    + E   S+L EM  +G+  S  T+      F   + RK  
Sbjct: 328 GICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYNCF---FKEYRGRKDV 384

Query: 299 VAIFELMNKYKFKAG-----VDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYT 352
               EL NK K         + + N LL    +    +    L++ +  R   P+L +YT
Sbjct: 385 SGALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYT 444

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           +L+ G+C  +   EA + + EMI+KGF P  +       GL++
Sbjct: 445 LLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETPYRGLIQ 487


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 214/436 (49%), Gaps = 39/436 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ME+ L   GI+L+ NL+   L R RH  + A  FF +    P  +    ++N ++ ILGR
Sbjct: 58  MESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGR 117

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE----LMNKYKFKAG 313
            RQF+ +  ++ EM +    S ETF I +    AA   ++AV  F+     +   +F+  
Sbjct: 118 VRQFDVVRQLIVEMDQT---SPETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRRFR-- 172

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           +     LL+ L +    K A  +F++ K  F  +   YT+L+ GWC+++ +  A +   E
Sbjct: 173 LVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVE 232

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRS----------DAIKLFEVMKAKGPSPNVRSYTI 423
           MI+ G +P+VV +N++L G+ +               +A K+F+ M+ +G  P+V S++I
Sbjct: 233 MIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSI 292

Query: 424 MIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++  + + + A                     YT ++    +  R++   +LL+ M E G
Sbjct: 293 VLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESG 352

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P   TYN   K  K +K  + A+ +Y++M     KP+  TYN+++ ++   G  E  +
Sbjct: 353 ISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVK 412

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           ++WD++      PD +SYT L+ GL S+++  EA  Y  EM+E+G     L +      L
Sbjct: 413 EIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGL 472

Query: 584 SRAGRSYVLDELAQKM 599
            ++ +      L +K+
Sbjct: 473 IQSNKMRTWRRLKKKL 488


>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
 gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
 gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
          Length = 530

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 194/424 (45%), Gaps = 48/424 (11%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           R++E V    +   +       +L+ CG   S  +VV VL+R R++   A   F WA  +
Sbjct: 81  RDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSCAAAHAAFRWASAQ 140

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           PG+A      +SM++IL + R+F+   ++L++M    L S     + +  + AA++   A
Sbjct: 141 PGYAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGA 200

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           VA F  +    F+ GV   + LL  L R K  ++A+ L    +  F     ++ V+L GW
Sbjct: 201 VAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNVVLNGW 260

Query: 359 CR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C  V+++ EA R WN M  KG K DVV++  M+    K G     +KLF  MK  G  P+
Sbjct: 261 CNMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVIPD 320

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            + Y  +++   K                  ++    L++ MEE+G  PD  T+N+LI+ 
Sbjct: 321 RKIYNAVVYALAKGQC---------------VNEAKALVRSMEEKGVAPDTATFNSLIRP 365

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYN------------------------------ 507
           +   +   EA ++  +M+  G  P++ T++                              
Sbjct: 366 LCKARQVQEARKMLDDMLGRGLSPSVRTFHALLDVARSPIEVFDLLDKMKELQCDPEMDT 425

Query: 508 --MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
             M+++ + +   ++   K+W  M   G  PD ++Y VLI GL    R  E+ KY EEM 
Sbjct: 426 FIMLIRKFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMK 485

Query: 566 EKGM 569
            KG 
Sbjct: 486 AKGF 489



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   + + YN+++  L + +      +++  M EKG+     TF   +     A++ ++A
Sbjct: 316 GVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEA 375

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             + + M        V T + LL ++ RS  P E   L DK+K  +  P + T+ +L+  
Sbjct: 376 RKMLDDMLGRGLSPSVRTFHALL-DVARS--PIEVFDLLDKMKELQCDPEMDTFIMLIRK 432

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR +      ++W+ M   G  PD  A+ +++ GL   G+  ++ K +E MKAKG  P 
Sbjct: 433 FCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPPE 492

Query: 418 VRS-YTIMIW 426
            ++   I  W
Sbjct: 493 KKTEEMIQAW 502



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 50/277 (18%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  G    + +L  L + +   +A+ L D+++     +     +L+  +C  +++  A  
Sbjct: 143 YAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAVA 202

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
            +  + + GF+P V   + +L  L +     DA  L    + + P    +S+ +++  +C
Sbjct: 203 AFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPF-ETKSFNVVLNGWC 261

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
               +V                                                  EA R
Sbjct: 262 NMVRSVR-------------------------------------------------EAKR 272

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            +  M   G K  + +Y  ++  + + G+ +   K+++ M   G  PD   Y  ++  L 
Sbjct: 273 FWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVIPDRKIYNAVVYALA 332

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
                 EA   +  M EKG+      +N     L +A
Sbjct: 333 KGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKA 369


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 201/411 (48%), Gaps = 21/411 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E++++  +++  +    N+   L+     +S+ LV  +L+RF +    A+  F WA D+ 
Sbjct: 142 EVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQI 201

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
            + H+  +YNSM+ ILG+A+ F  M  +++EM    G +S+ET    +   A A   ++A
Sbjct: 202 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEA 261

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  + KY        +N L++ L +    ++A  +F +LK     NL ++ VL+ G+
Sbjct: 262 IHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGY 321

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ K L EA ++  E+   G +PDV+++   +E   +     +  K+   M+ KG  PNV
Sbjct: 322 CKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNV 381

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            ++TI++                       C  +++ Y+ LI   G   R+  V +++++
Sbjct: 382 ITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVED 441

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME++G  PD LTYN LI         + A+ +  +M     KP + TY+ ++K + +   
Sbjct: 442 MEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKR 501

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            ++ + + D M +     +  +Y +L+ GL    +   A  +  EML K M
Sbjct: 502 MKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAM 552



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 127/309 (41%), Gaps = 53/309 (17%)

Query: 297 KAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVL 354
           +A  IF+   ++  ++   ++ N +++ LG++K  +    L D++ H   + +L T + +
Sbjct: 189 QAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKV 248

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    R     EA   +  +   G   D  A N++++ L+K     DA  +F  +K   P
Sbjct: 249 IRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIP 308

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            N A +  LI G+   +++D                        
Sbjct: 309 F----------------NLASFNVLIHGYCKAKKLD------------------------ 328

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
                      EA +I  E+ +SG +P + +Y   ++++ +  ++    KV  +M  +GC
Sbjct: 329 -----------EAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGC 377

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++T+++  L    +  EA K  E+M ++G       Y+     L +AGR   + E
Sbjct: 378 KPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKE 437

Query: 595 LAQKMRFSG 603
           + + M   G
Sbjct: 438 IVEDMEKQG 446


>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
 gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 188/394 (47%), Gaps = 22/394 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L EC ++LS ++V +VL R          FF WA  +P  + +  +YN ++  LGR
Sbjct: 120 IERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGR 179

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVD 315
            +  + MV  L E+  +G+ ++ ETF I +++   A+   KA+ +F  L  ++ F+   +
Sbjct: 180 RKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDAE 239

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           ++N LL+ L R      A   F+ +K +   N  TY V++GGW +   + E  RV+ EM 
Sbjct: 240 SLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEME 299

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF------- 428
           + GF PD ++ + +LEGL + GK  DA+ +F  M+ KG  P+   Y  MI  F       
Sbjct: 300 EDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNFD 359

Query: 429 -------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C  N   YT +I+G     ++    ++  EM +RG      T  + I
Sbjct: 360 ECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFI 419

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           + +     P  A+ IY +  + G K ++  Y +++    + G   M  K+WDEM   G  
Sbjct: 420 EPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYS 479

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            D   Y  LI GL +  +   A   +EE + KG 
Sbjct: 480 SDMEVYEYLISGLCNIGQFENAVLVMEESMRKGF 513



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 18/292 (6%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           VD+ N ++  LGR K          +L+    + N  T+++++    R + + +A +++ 
Sbjct: 167 VDSYNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFG 226

Query: 373 EMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
            + ++ GF+ D  + N++L+ L +      A   F  +K K P                 
Sbjct: 227 NLEEEFGFERDAESLNVLLQCLCRRSHVGAANSYFNSVKGKIPF---------------- 270

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   Y  +I G+    R+  +  + +EMEE G  PD L+++ L++ +      ++AV I+
Sbjct: 271 NCMTYNVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIF 330

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             M   G  P  + YN ++ ++   GN++   K +  ++ + C P+ ++YT +I GLI  
Sbjct: 331 GSMEEKGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKA 390

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +  +A +  +EML++GM         F   L   G  +    +  K R  G
Sbjct: 391 SKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVG 442



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 2/178 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY  M+S L +A +    + M +EM ++G+++   T    +    +      A+ I+
Sbjct: 376 NIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIY 435

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
               K   K  +     LL  L R         ++D+++   ++ ++  Y  L+ G C +
Sbjct: 436 TKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNI 495

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                A  V  E + KGF P     + +   LL   K   A +LF  +K    S N R
Sbjct: 496 GQFENAVLVMEESMRKGFCPSRFICSKLNNKLLASNKVERAYRLFLKIKHARHSENAR 553


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 200/394 (50%), Gaps = 26/394 (6%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
            I LSH+LV  +L+RF+   + A   F WA    GF H    Y+ ++  LG+ +Q   M 
Sbjct: 99  SIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMR 158

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            MLEEM E  L++++T   AM  FA A + + AV IF+ +  Y  +   +++N LL+ L 
Sbjct: 159 GMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTLC 218

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           + K  ++A+ ++ +LK    PN  T+ + + GWC+V  + EA     EM   G +P V++
Sbjct: 219 KEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVIS 278

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
           ++ ++         +   +L + M A+G   NV +YT ++    K               
Sbjct: 279 YSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMK 338

Query: 432 ------NAAVYTCLITGFGNRRRM-DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                 +   Y CLI   G   ++ + ++    EM  +   P+  TYN++I +   +   
Sbjct: 339 SAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRARE 398

Query: 485 DEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTG--NYEMGRKVWDEMI-RRGCCPDDNS 540
           ++A+++ +EM +S   KP + TY  ++KS F+TG  +Y++   + DEMI +     D ++
Sbjct: 399 EKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSN-LLDEMINKHHLSLDIST 457

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           Y++LI GL   ++   AY+  E+M+ + +K   L
Sbjct: 458 YSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYL 491



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +  ++E  G   +  + N L+  +  +K  ++A ++Y E+ +S   P  +T+NM +  + 
Sbjct: 194 IFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLEL-KSHIAPNANTFNMFIHGWC 252

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +    +      +EM   G  P   SY+ +I     +    + Y+ L+EM  +G  A V+
Sbjct: 253 KVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVI 312

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y      L+++       ++A++M+ +G
Sbjct: 313 TYTTIMCSLTKSEEFEEALQIAERMKSAG 341


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 201/411 (48%), Gaps = 21/411 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E++++  +++  +    N+   L+     +S+ LV  +L+RF +    A+  F WA D+ 
Sbjct: 165 EVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQI 224

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
            + H+  +YNSM+ ILG+A+ F  M  +++EM    G +S+ET    +   A A   ++A
Sbjct: 225 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEA 284

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  + KY        +N L++ L +    ++A  +F +LK     NL ++ VL+ G+
Sbjct: 285 IHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGY 344

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ K L EA ++  E+   G +PDV+++   +E   +     +  K+   M+ KG  PNV
Sbjct: 345 CKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNV 404

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            ++TI++                       C  +++ Y+ LI   G   R+  V +++++
Sbjct: 405 ITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVED 464

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME++G  PD LTYN LI         + A+ +  +M     KP + TY+ ++K + +   
Sbjct: 465 MEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKR 524

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            ++ + + D M +     +  +Y +L+ GL    +   A  +  EML K M
Sbjct: 525 MKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAM 575



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 127/309 (41%), Gaps = 53/309 (17%)

Query: 297 KAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVL 354
           +A  IF+   ++  ++   ++ N +++ LG++K  +    L D++ H   + +L T + +
Sbjct: 212 QAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKV 271

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    R     EA   +  +   G   D  A N++++ L+K     DA  +F  +K   P
Sbjct: 272 IRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIP 331

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            N A +  LI G+   +++D                        
Sbjct: 332 F----------------NLASFNVLIHGYCKAKKLD------------------------ 351

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
                      EA +I  E+ +SG +P + +Y   ++++ +  ++    KV  +M  +GC
Sbjct: 352 -----------EAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGC 400

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++T+++  L    +  EA K  E+M ++G       Y+     L +AGR   + E
Sbjct: 401 KPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKE 460

Query: 595 LAQKMRFSG 603
           + + M   G
Sbjct: 461 IVEDMEKQG 469


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 188/410 (45%), Gaps = 21/410 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           +++ V +++   F+    +   +D C + +S  LV  VL RF +    AF FF WAG + 
Sbjct: 132 DMDEVSRILRSRFASPEAIVITMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQE 191

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G+ H + +Y+ M+ ILG+ +QF+ M  ++ +M E  GL+S+ T    M     A     A
Sbjct: 192 GYCHCADSYDMMVDILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDA 251

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M+++        +N LL+ L + +  K A+  F  LK    P+ +++  L+ GW
Sbjct: 252 IDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLVHGW 311

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ + L EA     EM   GF P V  +  ++E             + + M  KG +PN+
Sbjct: 312 CKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNI 371

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++                       C  +A+ Y CLI       R+     +++E
Sbjct: 372 ITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEE 431

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  P+  T+N LI       + + A+++  +M      P I TY  ++K   +   
Sbjct: 432 MHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKW 491

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            +    +   M R+   PD ++YT+L+  L    R  ++  +LEEM+ KG
Sbjct: 492 VKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKG 541



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 20/200 (10%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           SDAI  F  M   G + + ++  +++   CK+ +             +R    +  LK  
Sbjct: 249 SDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSV------------KRARGAFQALKGT 296

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
                PPD  ++N L+      +M  EA    KEM R GF P++ TY  ++++Y    ++
Sbjct: 297 ----IPPDESSFNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDF 352

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +    + DEM  +GC P+  +YT+++  L    R+ EA    +++ + G       YN  
Sbjct: 353 QTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCL 412

Query: 580 AADLSRAGR----SYVLDEL 595
              L RAGR    ++V++E+
Sbjct: 413 IYILCRAGRLQDANFVVEEM 432



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +L T T ++   C      +A   +++M   G   D  A N++L+ L K      A   F
Sbjct: 231 SLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAF 290

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + +K   P P+  S+  ++  +CK                R +    + +KEME  G  P
Sbjct: 291 QALKGTIP-PDESSFNTLVHGWCKA---------------RMLKEARETMKEMERHGFSP 334

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
              TY  LI+   ++K       I  EM   G  P I TY ++M +  + G  +     +
Sbjct: 335 SVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALDTF 394

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           D++ + GC  D + Y  LI  L    R  +A   +EEM   G+   +  +N
Sbjct: 395 DKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFN 445



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A ++  YN ++ IL RA + +    ++EEM   G+  ++ TF   ++A       + A
Sbjct: 401 GCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENA 460

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + +   M +      + T   LL+   R K  K    L   + +   TP+ +TYT+L+  
Sbjct: 461 LKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCW 520

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            CR   L ++     EM+ KGF P     +++LE L
Sbjct: 521 LCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLEKL 556


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 200/394 (50%), Gaps = 26/394 (6%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
            I LSH+LV  +L+RF+   + A   F WA    GF H    Y+ ++  LG+ +Q   M 
Sbjct: 68  SIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMR 127

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            MLEEM E  L++++T   AM  FA A + + AV IF+ +  Y  +   +++N LL+ L 
Sbjct: 128 GMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTLC 187

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           + K  ++A+ ++ +LK    PN  T+ + + GWC+V  + EA     EM   G +P V++
Sbjct: 188 KEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVIS 247

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
           ++ ++         +   +L + M A+G   NV +YT ++    K               
Sbjct: 248 YSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMK 307

Query: 432 ------NAAVYTCLITGFGNRRRM-DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                 +   Y CLI   G   ++ + ++    EM  +   P+  TYN++I +   +   
Sbjct: 308 SAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRARE 367

Query: 485 DEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTG--NYEMGRKVWDEMI-RRGCCPDDNS 540
           ++A+++ +EM +S   KP + TY  ++KS F+TG  +Y++   + DEMI +     D ++
Sbjct: 368 EKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLS-NLLDEMINKHHLSLDIST 426

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           Y++LI GL   ++   AY+  E+M+ + +K   L
Sbjct: 427 YSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYL 460



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +  ++E  G   +  + N L+  +  +K  ++A ++Y E+ +S   P  +T+NM +  + 
Sbjct: 163 IFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLEL-KSHIAPNANTFNMFIHGWC 221

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +    +      +EM   G  P   SY+ +I     +    + Y+ L+EM  +G  A V+
Sbjct: 222 KVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVI 281

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y      L+++       ++A++M+ +G
Sbjct: 282 TYTTIMCSLTKSEEFEEALQIAERMKSAG 310


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 196/416 (47%), Gaps = 23/416 (5%)

Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
           DP+ +  +C+V+ +      ++ A LD     L+     DVL R R+   P+ RFF +A 
Sbjct: 46  DPQLVGALCRVLSDFRGPRHDLRAALDGFAPRLTPAAAADVLRRCRNLPVPSLRFFLFAA 105

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
             PGF H   +   +   L  AR F  + S+L ++  +  LS + F +   A+A A    
Sbjct: 106 ALPGFTHLPESLLILAGSLAGARLFPLLRSLLSDL-PRPALSRDLFPLLFRAYARAGLPD 164

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A+  F  M ++ F   V  ++ LL  L  + L + A+  F +   +F  +  TYT+L+ 
Sbjct: 165 DAIRAFSSMERFGFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPIQFDVSAKTYTILIS 224

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPS 415
           GW  V    +A ++++EMI++G +PDV A+N +++ L + G  + A  +L ++ +++G +
Sbjct: 225 GWAVVAKPEKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRGLA 284

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y   +   C                      N   Y  +I        +D  Y++
Sbjct: 285 PDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEVDEAYNI 344

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM   G  PD  +YN L+      K  ++A+R+   M      P  H+YNMI+K    
Sbjct: 345 LNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMILKMLIA 404

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL-ISQDRSGEAYKYLEEMLEKGMK 570
            G  +   +VWD M +RG  P   +Y V+I GL   + R+ EA  Y   M++ G+ 
Sbjct: 405 IGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGLSCKKGRAEEACSYFLRMVDDGIP 460


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 194/425 (45%), Gaps = 21/425 (4%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E+E V KV+ + +         LD      S  LV  VL RF +   PA  FF WA    
Sbjct: 96  ELEAVTKVLQKRYPSPELASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLT 155

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G+ H+   YN M+ ILG+ R F++M  ++EEM   +G +++ET    M   A A++ + A
Sbjct: 156 GYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHEDA 215

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M K+  K     +N L++ L +    + A  +  + K     +  ++ VL+ GW
Sbjct: 216 IEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGW 275

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR ++   A +   +M + GF+PDV ++   +E            ++ E M+  G  PN 
Sbjct: 276 CRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNA 335

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT ++                       C  +   Y+ +I   G   R+    D+ ++
Sbjct: 336 VTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFED 395

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M ++G   D +TYN++I         + A+R+ KEM     KP + TY+ ++K   +   
Sbjct: 396 MPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKR 455

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            ++ + + D M +    PD  +Y++L+  L    +  +AY +LEEM+ +G         K
Sbjct: 456 MKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKK 515

Query: 579 FAADL 583
            A +L
Sbjct: 516 LAGEL 520


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 202/407 (49%), Gaps = 24/407 (5%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFR-- 230
           ++T D  ++E V +++    S  RN++  L   G+ LS++L+  VL+R R +    F+  
Sbjct: 52  ETTVDNGDVETVFRIVSSA-SSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQAL 110

Query: 231 -FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMN 287
            FF +   + GF H   + ++M+ ILGR+R+F+ +  +L +M  K   L+S  + ++ + 
Sbjct: 111 AFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVLG 170

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN 347
             A     K+ V  F    K   +      N LL  L + K  ++A+ ++  LKH F P+
Sbjct: 171 RIAKVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPD 230

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L T+ +LL GW   K+  EA   ++EM + G +PDVV++N +++   K  +   A K+ +
Sbjct: 231 LRTFNILLSGW---KSAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVID 287

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            M+ +  SP+V SYT                +I G G   + D   D+LKEM+E GC PD
Sbjct: 288 KMRDEQISPDVISYT---------------SIIGGLGLVGQPDKARDVLKEMKEYGCYPD 332

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
              YNA I+   I     +A  +  EMV  G  P   TYN+  + ++ + +      ++ 
Sbjct: 333 VAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQ 392

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
            M + GC P+  S   L      Q++   A +   +M+EKG  + +L
Sbjct: 393 RMKKTGCLPNTQSCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYIL 439



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 140/319 (43%), Gaps = 40/319 (12%)

Query: 297 KAVAIFELMNKYK-FKAGVDTINCLLENLGRSK-LPKEAQLLFD-KLKHRFTPNLTTYTV 353
           +A+A F   NK K F     +++ +L  LGRS+   +  +LL D + K +   +  +  V
Sbjct: 108 QALAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQV 167

Query: 354 LLG---GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           +LG     C VK  +E+ R + +++ +    D    N +L  L +     DA  ++  +K
Sbjct: 168 VLGRIAKVCSVKQTVESFRKFKKLVPEF---DTACFNALLRTLCQEKSMRDARNVYHSLK 224

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                P++R++ I               L++G+ +    +  +D   EM E G  PD ++
Sbjct: 225 HDF-RPDLRTFNI---------------LLSGWKSAEEAEGFFD---EMREMGVEPDVVS 265

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN LI +    +  + A ++  +M      P + +Y  I+      G  +  R V  EM 
Sbjct: 266 YNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMK 325

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF------AADLS 584
             GC PD  +Y   I      +R G+A   ++EM+ KG+      YN F      + DL 
Sbjct: 326 EYGCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLG 385

Query: 585 RAGRSYVLDELAQKMRFSG 603
           R+   Y      Q+M+ +G
Sbjct: 386 RSCGLY------QRMKKTG 398



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 51/259 (19%), Positives = 99/259 (38%), Gaps = 53/259 (20%)

Query: 216 DVLERFRHARRPAFRFF-----CW--AGDKPGFAHNSR---------TYNSMMSILGRAR 259
           +V    +H  RP  R F      W  A +  GF    R         +YN ++ +  + R
Sbjct: 218 NVYHSLKHDFRPDLRTFNILLSGWKSAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGR 277

Query: 260 QFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + E    ++++M ++ +   + ++   +       +  KA  + + M +Y     V   N
Sbjct: 278 EIERAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYN 337

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL---------LGGWC--------- 359
             + N   +    +A  L D++  +  +PN TTY +          LG  C         
Sbjct: 338 AAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKT 397

Query: 360 -----------------RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
                            R + +  A  +WN+M++KGF   ++  +++ + L  +GK  + 
Sbjct: 398 GCLPNTQSCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEV 457

Query: 403 IKLFEVMKAKGPSPNVRSY 421
            K    M  KG  P+  S+
Sbjct: 458 EKCCLQMIEKGHKPSNVSF 476


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 190/412 (46%), Gaps = 22/412 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E++ + KV+ + +         LD      S  LV  VL RF +   PA  FF WA  + 
Sbjct: 93  ELDAITKVLKKRYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQT 152

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSMETFKIAMNAFAAAKERKK 297
           G+ H+    N M+ ILG+ + F+ M  ++EEM   E+G +++ET    +   A A++ + 
Sbjct: 153 GYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHED 212

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+  F  M+K+        +N L++ L +    + A  +  + K     +  ++ VL+ G
Sbjct: 213 AIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMHG 272

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WCR +    A +   +M + GF+PDV ++   +E            ++ E M+  G  PN
Sbjct: 273 WCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPPN 332

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT ++                       C  +  VY+C+I   G   R+    D+ +
Sbjct: 333 AVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFE 392

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M ++G   D +TYN +I         + A+R+ KEM     KP + TY+ ++K   +  
Sbjct: 393 DMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKK 452

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             ++ + + D M +    PD  +Y++L+  L    +  +AY +LEEM+ KG 
Sbjct: 453 RMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGF 504



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 165/399 (41%), Gaps = 45/399 (11%)

Query: 141 YRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEA 200
           YR+   + +   D  G+C   +  S++     K       +E + KVI  L    ++ +A
Sbjct: 154 YRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHEDA 213

Query: 201 V-----LDECGIN---LSHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYN 249
           +     +D+ G+N    + N+++D L   +   HA +    F      K     +S ++N
Sbjct: 214 IEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEF------KGLIPLSSHSFN 267

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
            +M    RAR+F+     +E+M E G    + ++   + A+   ++ +K   + E M + 
Sbjct: 268 VLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMREN 327

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK----HRFTPNLTTYTVLLGGWCRVKNL 364
                  T   ++ +LG++    +A  +++K+K       TP  +    +LG   R+K+ 
Sbjct: 328 GCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKD- 386

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  V+ +M  +G   DVV +N M+       +   A++L + M+     PNV +Y  +
Sbjct: 387 --ACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPL 444

Query: 425 -----------IWKF---------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                      + KF            + A Y+ L+       ++   Y  L+EM  +G 
Sbjct: 445 LKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGF 504

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
            P   T   L   ++   M +E  R+ + M R   K  I
Sbjct: 505 TPKPSTLKGLAGELESLSMLEEKERVEEWMDRFSQKQNI 543



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           +I      R+ +   +  + M++ G   D    N LI  +      + A ++  E    G
Sbjct: 200 VIRRLAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEF--KG 257

Query: 499 FKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
             P + H++N++M  + +   ++  RK  ++M   G  PD  SYT  I     +    + 
Sbjct: 258 LIPLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKV 317

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            + LEEM E G     + Y      L +AG+     E+ +KM+  G
Sbjct: 318 DQVLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDG 363


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 202/405 (49%), Gaps = 35/405 (8%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME+ L    I+ S +L+   L R  H  + A  FF +A   P    ++ +YN ++ IL 
Sbjct: 54  SMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSFFDYANSLPSNPISTTSYNILLDILA 113

Query: 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGVD 315
           + RQF+    ++ +M  KG    +TF + +    ++   ++A+  F+ +      K G+D
Sbjct: 114 KVRQFDAAWHLILQMDHKG---TDTFLLLIRRLISSGRTRQAIRAFDDIEGLTGNKVGID 170

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
               LL+ L +    K A  +F+K K  F  ++  YT+L+ GWC++     A R   +M+
Sbjct: 171 DFCYLLDVLCKYGYVKVAVEVFNKRKEEFGVDVKIYTILIYGWCKIGRFEMAERFLKDMV 230

Query: 376 DKGFKPDVVAHNIMLEGLLK------IGKRSDAI----KLFEVMKAKGPSPNVRSYTIMI 425
           ++G +P+VV +N++L G+ +       G+    I    K+F+ M+ +G  P+V S++I++
Sbjct: 231 ERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIRHAEKVFDEMRKRGIEPDVTSFSIVL 290

Query: 426 WKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             + + +                     A YT +I    +  R++   +L++EM   G  
Sbjct: 291 HVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCLCSCGRLEDGENLIEEMVRSGIS 350

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYEMGRK 524
           P   TYN   K  + +K    A+R+YK+M       P++HTYN+++  +      E  ++
Sbjct: 351 PSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCLCAPSLHTYNILLALFLNLDKKETLKE 410

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +W++M   G  PD +SYT +I GL  + R  EA ++  EM+E+G 
Sbjct: 411 LWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEACQFFVEMIERGF 455


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 198/388 (51%), Gaps = 24/388 (6%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
            I+LSH LV  +L RF+   + A   F WA  + G+ H+   Y++M+ I+G+ +Q + M 
Sbjct: 46  SIHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQME 105

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            +LEEM +   ++++T   AM  FA A++ +  + +F+ +  +  +   +++N LL+ L 
Sbjct: 106 FLLEEMEKGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLC 165

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           + +  + A+ +F  LK   +PN  T+ + + GWC+V  + EA     EM   G  P V++
Sbjct: 166 KERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVIS 225

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----------------- 428
           ++ +++        S   +L + M+A+G  PNV +YT ++                    
Sbjct: 226 YSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMK 285

Query: 429 ---CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQKMP 484
              CK +   Y  LI   G   R +    + + EM   G PP+  TYN++I ++      
Sbjct: 286 SVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQE 345

Query: 485 DEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYE-MGRKVWDEMIRR-GCCPDDNSY 541
            +A+ + KE+  S   KP + TY  ++KS F+ G+ + +  ++ D+M+++     D ++Y
Sbjct: 346 RKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSAY 405

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           T+L+ GL   ++   AY   EEM+ K M
Sbjct: 406 TLLVHGLCRANKCEWAYCLFEEMIGKDM 433



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 21/250 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           +Y++++        F  +  +L+EM  +GL+ ++ T+   M+A A ++E ++A+ I + M
Sbjct: 225 SYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRM 284

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD--KLKHRFTPNLTTYTVLLGGWCRVKN 363
                K      N L+  LG++  P+EA  +F+         PN +TY  ++   C    
Sbjct: 285 KSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQ 344

Query: 364 LMEAGRVWNEMIDKGF--KPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPSPNVRS 420
             +A  +  E I+     KPDV  +  +L+   K G     + +L + M        V+ 
Sbjct: 345 ERKALNLLKE-IEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDM--------VKK 395

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           + + +      + + YT L+ G     + +  Y L +EM  +   P   T   L+  +K+
Sbjct: 396 HHLSL------DFSAYTLLVHGLCRANKCEWAYCLFEEMIGKDMTPKYQTCRLLLDEVKL 449

Query: 481 QKMPDEAVRI 490
           + M D A +I
Sbjct: 450 KHMYDAAQKI 459



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 18/189 (9%)

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           + +++F+ +   G   N  S  +++   CK+               R++++  ++  +++
Sbjct: 137 NVLRVFDKLGTFGLEKNTESMNLLLDTLCKE---------------RKVELAREIFLDLK 181

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
                P+  T+N  I    K+ ++ +EA    +EM   G  P + +Y+ I++ Y    N+
Sbjct: 182 SH-ISPNANTFNIFIHGWCKVNRV-EEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNF 239

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               ++ DEM  +G  P+  +YT ++  L   +   EA +  + M   G K   L YN  
Sbjct: 240 SKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSL 299

Query: 580 AADLSRAGR 588
              L +AGR
Sbjct: 300 IHTLGKAGR 308



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 35/192 (18%)

Query: 224 ARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
           A RP  A + F       G   N+ TYNSM+++L    Q    +++L+E+ E  ++    
Sbjct: 306 AGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEI-EASIIC--- 361

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
                         K  V  +  + K  FKAG  +I+ LL           +QLL D +K
Sbjct: 362 --------------KPDVQTYYPLLKSCFKAG--SIDSLL-----------SQLLDDMVK 394

Query: 342 -HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
            H  + + + YT+L+ G CR      A  ++ EMI K   P      ++L+  +K+    
Sbjct: 395 KHHLSLDFSAYTLLVHGLCRANKCEWAYCLFEEMIGKDMTPKYQTCRLLLDE-VKLKHMY 453

Query: 401 DAIKLFEVMKAK 412
           DA +  E++  K
Sbjct: 454 DAAQKIEIVMQK 465



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           F   R+ + V  +  ++   G   +  + N L+  +  ++  + A  I+ ++ +S   P 
Sbjct: 129 FAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLDL-KSHISPN 187

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
            +T+N+ +  + +    E       EM   GC P   SY+ ++     +    + Y+ L+
Sbjct: 188 ANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLD 247

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EM  +G+   V+ Y    + L+++       ++AQ+M+  G
Sbjct: 248 EMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVG 288


>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
          Length = 504

 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 198/433 (45%), Gaps = 30/433 (6%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L+  G+ +S   V DVL+    A   A +FF WAG K    H+   +N ++ +LG 
Sbjct: 65  IENTLNGLGLGVSIKFVEDVLKLSYGAGMEAMKFFRWAGLKLSSKHSPLAWNLLVDLLGS 124

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            + F+ M   ++ M  +G++S ET       +  A +  +A   FE+M +Y  +  V  +
Sbjct: 125 DKLFDAMWDCIKIMKNQGIVSTETLSSVFGNYVQAGKVDEARMTFEVMEQYGCRQDVVAL 184

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           NC +  L R K  K A   FD +K R  P+  TY +LL GW    N+  A   + EMI +
Sbjct: 185 NCYISALCRYKQVKAALEFFDSVKERIAPDADTYALLLEGWEIEGNVSNARSTFGEMIAR 244

Query: 378 -GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY-------------- 421
            G+ P +  A+N  L  L+   +  +A+K   VMK K   P++  +              
Sbjct: 245 LGWMPNNTSAYNAFLSTLVNGFQVDEALKYLGVMKTKKCLPDLGFFRNTLQILYQRKAMK 304

Query: 422 -------TIMIWKFCKQNAAV-----YTCLI--TGFGNRRRMDIVYDLLKEMEERGCPPD 467
                   + +W+F +Q+  V     Y  +I      N  +++  Y LL EM   G  PD
Sbjct: 305 EPYGLWQLMSLWEFMRQSGIVPDLPTYNTMIGVCCSANPIQVNSAYSLLDEMALTGAFPD 364

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
             TYN + +     +  +EA  I++EM ++ F P    Y M +K YF+  + EM   +W 
Sbjct: 365 SKTYNTIFEAFITARKVEEASSIFREMTKNEFCPLYANYVMAIKMYFEADDSEMAVMMWR 424

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            MI++   P  +   +LI G +   R   A KY  E + +G++ PV    K      + G
Sbjct: 425 HMIQKAIFPKSDCAAILIDGFLDLGRVSAALKYSLEAITRGVQIPVETMIKLKNASIQTG 484

Query: 588 RSYVLDELAQKMR 600
           +     +L  KM+
Sbjct: 485 KQDAYGQLEIKMK 497


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 194/414 (46%), Gaps = 22/414 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           +I+ V +++   F+    +   +D C + ++  LV  +L RF +    AF FF W G + 
Sbjct: 160 DIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQG 219

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G+ H + +Y+ M+ ILG+ +QF+ M  ++ +M E  GL+S+ T    M   A A    +A
Sbjct: 220 GYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEA 279

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M+++        +N LL+ L + +  K A+ +F +L+    P+  ++  L+ GW
Sbjct: 280 IDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGW 339

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ + L EA     EM   GF P VV +  ++E             L + M+ +   PNV
Sbjct: 340 CKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNV 399

Query: 419 RSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++    K                     +A+ Y  LI   G   R++  Y +++E
Sbjct: 400 VTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 459

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  P+  T+N LI         + A+++  +M      P I TY  ++K   +   
Sbjct: 460 MRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQW 519

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
            ++   +   M R+   PD ++YT+L+  L    +  ++  +LEEM+ KG  AP
Sbjct: 520 VKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGF-AP 572



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           N+M++ G    ++    ++  L    + ++AI  F  M   G   + ++  +++   CK+
Sbjct: 249 NQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKE 308

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRI 490
            +             +R   V+      E RG  PPD  ++N L+      +M  EA+  
Sbjct: 309 RSV------------KRARGVFQ-----ELRGTIPPDENSFNTLVHGWCKARMLKEALDT 351

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            +EM + GF P++ TY  ++++Y    +++    + DEM +R C P+  +YT+L+  L  
Sbjct: 352 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGK 411

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             R+ EA    +++ E G+      YN     L RAGR      + ++MR +G
Sbjct: 412 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 464



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 27/236 (11%)

Query: 361 VKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ L  A R W E ID        G   D  A N++L+ L K      A  +F+ ++   
Sbjct: 267 MRRLAGASR-WTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTI 325

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
           P P+  S+  ++  +CK                R +    D ++EM++ G  P  +TY +
Sbjct: 326 P-PDENSFNTLVHGWCKA---------------RMLKEALDTMEEMKQHGFSPSVVTYTS 369

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L++   ++K       +  EM +    P + TY ++M +  + G        +D++   G
Sbjct: 370 LVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG 429

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF---AADLSRA 586
             PD + Y  LI  L    R  +AY  +EEM   G+   V  +N     A D S+A
Sbjct: 430 VAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQA 485



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A ++  YNS++ ILGRA + E   S++EEM   G+  ++ TF   ++A     + + A
Sbjct: 429 GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENA 488

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----TPNLTTYTVL 354
           + +   M +      + T   LL+   + +  K   +L   + H F    +P+ +TYT+L
Sbjct: 489 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVK---ILLFLVCHMFRKDISPDFSTYTLL 545

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           +   CR   + ++     EM+ KGF P     ++++E L K
Sbjct: 546 VSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 586



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF+ +  TY S++      + F+T+ ++L+EM ++    ++ T+ I M+A   A   ++A
Sbjct: 359 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 418

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +  F+ + +          N L+  LGR+   ++A  + ++++     PN+TT+  L+  
Sbjct: 419 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 478

Query: 358 WC---RVKNLME------------------------AGRVWNE--------MIDKGFKPD 382
            C   + +N ++                          R W +        M  K   PD
Sbjct: 479 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 538

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
              + +++  L + GK + +    E M +KG +P   ++ +++ K  K+N
Sbjct: 539 FSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRN 588


>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
 gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 195/394 (49%), Gaps = 25/394 (6%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA 258
           E V D   I +S++LV  +L RF+   + A   F WAG +PG+ H    Y+ M+ ILG+ 
Sbjct: 30  EQVCD--NIEVSNDLVDKLLLRFKDDWKSALGVFRWAGLRPGYKHRPEAYDMMVDILGKM 87

Query: 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +Q + M  +LEEM    L+++ T   AM  F+ A + + AV +F+ +  +  +   +++N
Sbjct: 88  KQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWEDAVRMFDELGTFGLEKNAESMN 147

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
            LL+ L +    ++A+ +F +LK    PN  T+ + + GWC+   + EA     EM    
Sbjct: 148 LLLDTLCKEGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDEAHWTLQEMKGHA 207

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF---------- 428
           F+P V++++ ++    +    S   +L + M+A+G  PNV +YT +I             
Sbjct: 208 FRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTIIVFLAKSQNTEEAL 267

Query: 429 ----------CKQNAAVYTCLITGFGNRRRMDIVYDLL-KEMEERGCPPDGLTYNALIKL 477
                     CK +   +  LI   G   R     D+  KEM   G   D  TYN++I +
Sbjct: 268 QLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAM 327

Query: 478 MKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCC 535
           +       +A+ + +EM  S  FK    T+  ++KS  +TG+  +  ++ D+M+++    
Sbjct: 328 LCHHGHVSKALSLLREMETSAPFKLDGQTFYPLLKSCLRTGDMNLLSQLLDDMVKKHQLS 387

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            D ++Y +LI GL   ++   AY   EEM+ K +
Sbjct: 388 LDRSAYALLIHGLCRANKCQWAYHLFEEMISKDI 421



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 16/192 (8%)

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           GK  DA+++F+ +   G   N  S  +++   CK+            G   +   ++  L
Sbjct: 122 GKWEDAVRMFDELGTFGLEKNAESMNLLLDTLCKE------------GKVEQARAIFLEL 169

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           K        P+  T+N  I       + DEA    +EM    F+P + +Y+ I+  Y + 
Sbjct: 170 KS----HILPNAHTFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQ 225

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            N+    ++ DEM  +GC P+  +YT +I  L     + EA +  + M   G K     +
Sbjct: 226 HNFSKVYELLDEMEAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFF 285

Query: 577 NKFAADLSRAGR 588
           N     L RAGR
Sbjct: 286 NSLIYILGRAGR 297



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGL-LSMETFKIAMNAFAAA 292
           AG KP    ++  +NS++ ILGRA +F+  V + E EM   G+     T+   +      
Sbjct: 276 AGCKP----DTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHH 331

Query: 293 KERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLK-HRFTPNLT 349
               KA+++  E+     FK    T   LL++  R+  +   +QLL D +K H+ + + +
Sbjct: 332 GHVSKALSLLREMETSAPFKLDGQTFYPLLKSCLRTGDMNLLSQLLDDMVKKHQLSLDRS 391

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            Y +L+ G CR      A  ++ EMI K   P     +++LE
Sbjct: 392 AYALLIHGLCRANKCQWAYHLFEEMISKDIVPKYQTCHMLLE 433



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +  E+   G   +  + N L+  +  +   ++A  I+ E+ +S   P  HT+N+ +  + 
Sbjct: 130 MFDELGTFGLEKNAESMNLLLDTLCKEGKVEQARAIFLEL-KSHILPNAHTFNIFIHGWC 188

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +    +       EM      P   SY+ +I     Q    + Y+ L+EM  +G    V+
Sbjct: 189 KANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPNVV 248

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y      L+++  +    +L Q+M+ +G
Sbjct: 249 TYTTIIVFLAKSQNTEEALQLTQRMKSAG 277


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 198/425 (46%), Gaps = 22/425 (5%)

Query: 169 SVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA 228
           + S++      +I+ V +++   F+    +   +D C + ++  LV  +L RF +    A
Sbjct: 90  TASHEDAEFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAA 149

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMN 287
           F FF W G + G+ H + +Y+ M+ ILG+ +QF+ M  ++ +M E  GL+S+ T    M 
Sbjct: 150 FGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMR 209

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN 347
             A A    +A+  F  M+++        +N LL+ L + +  K A+ +F +L+    P+
Sbjct: 210 RLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPD 269

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
             ++  L+ GWC+ + L EA     EM   GF P VV +  ++E             L +
Sbjct: 270 ENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLD 329

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRR 447
            M+ +   PNV +YTI++    K                     +A+ Y  LI   G   
Sbjct: 330 EMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAG 389

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R++  Y +++EM   G  P+  T+N LI         + A+++  +M      P I TY 
Sbjct: 390 RLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYT 449

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++K   +    ++   +   M R+   PD ++YT+L+  L    +  ++  +LEEM+ K
Sbjct: 450 PLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSK 509

Query: 568 GMKAP 572
           G  AP
Sbjct: 510 GF-AP 513



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           N+M++ G    ++    ++  L    + ++AI  F  M   G   + ++  +++   CK+
Sbjct: 190 NQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKE 249

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRI 490
            +             +R   V+      E RG  PPD  ++N L+      +M  EA+  
Sbjct: 250 RSV------------KRARGVFQ-----ELRGTIPPDENSFNTLVHGWCKARMLKEALDT 292

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            +EM + GF P++ TY  ++++Y    +++    + DEM +R C P+  +YT+L+  L  
Sbjct: 293 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGK 352

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             R+ EA    +++ E G+      YN     L RAGR      + ++MR +G
Sbjct: 353 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 405



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 27/236 (11%)

Query: 361 VKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ L  A R W E ID        G   D  A N++L+ L K      A  +F+ ++   
Sbjct: 208 MRRLAGASR-WTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTI 266

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
           P P+  S+  ++  +CK                R +    D ++EM++ G  P  +TY +
Sbjct: 267 P-PDENSFNTLVHGWCKA---------------RMLKEALDTMEEMKQHGFSPSVVTYTS 310

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L++   ++K       +  EM +    P + TY ++M +  + G        +D++   G
Sbjct: 311 LVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG 370

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF---AADLSRA 586
             PD + Y  LI  L    R  +AY  +EEM   G+   V  +N     A D S+A
Sbjct: 371 VAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQA 426



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A ++  YNS++ ILGRA + E   S++EEM   G+  ++ TF   ++A     + + A
Sbjct: 370 GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENA 429

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----TPNLTTYTVL 354
           + +   M +      + T   LL+   + +  K   +L   + H F    +P+ +TYT+L
Sbjct: 430 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVK---ILLFLVCHMFRKDISPDFSTYTLL 486

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           +   CR   + ++     EM+ KGF P     ++++E L K
Sbjct: 487 VSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 527



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF+ +  TY S++      + F+T+ ++L+EM ++    ++ T+ I M+A   A   ++A
Sbjct: 300 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 359

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +  F+ + +          N L+  LGR+   ++A  + ++++     PN+TT+  L+  
Sbjct: 360 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 419

Query: 358 WC---RVKNLME------------------------AGRVWNE--------MIDKGFKPD 382
            C   + +N ++                          R W +        M  K   PD
Sbjct: 420 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 479

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
              + +++  L + GK + +    E M +KG +P   ++ +++ K  K+N
Sbjct: 480 FSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRN 529


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 176/367 (47%), Gaps = 16/367 (4%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           +I+ V +++   F+    +   +D C + +S  +V  +L RF      AF FF WAG + 
Sbjct: 95  DIDEVSRILSSHFASPEAIVIAMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQE 154

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G+ H++  YN M+ ILG+ +QF+ +  ++ +M E G L+S+ T    M   A A     A
Sbjct: 155 GYCHHADLYNLMVDILGKFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDA 214

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M+++        +N LL+ L + K  K A+ +F +L+    P+ +++  L+ GW
Sbjct: 215 IDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHGW 274

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ + L EA     EM + GF P V+ +  ++E             +   M +KG  PNV
Sbjct: 275 CQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNV 334

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +YTI               ++   G   R     D+  +++  GC PD   YN++I ++
Sbjct: 335 ITYTI---------------VMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYIL 379

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                 ++A  ++ EM R+G  PT+  +N ++ +       E   K+  +M  + C PD 
Sbjct: 380 GRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDI 439

Query: 539 NSYTVLI 545
            +YT L+
Sbjct: 440 KTYTPLL 446



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +DAI  F  M   G   + ++   ++   CK+ +             +R   V+  L+ +
Sbjct: 212 TDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSV------------KRARGVFQELRGV 259

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
                PPD  ++N L+      +M +EA    KEM   GF P++ TY  ++++Y    ++
Sbjct: 260 ----VPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDF 315

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +    + +EM  +GC P+  +YT+++  L    R+ EA    +++   G       YN  
Sbjct: 316 QTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSI 375

Query: 580 AADLSRAGR----SYVLDELAQ 597
              L RAGR    + V DE+ +
Sbjct: 376 IYILGRAGRLEDANSVFDEMCR 397



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 1/175 (0%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C  + A  T ++       R     D   +M++ G   D    NAL+  +  +K    A 
Sbjct: 191 CLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRAR 250

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +++E+ R    P   ++N ++  + Q       R    EM   G  P   +YT LI   
Sbjct: 251 GVFQEL-RGVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAY 309

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +      Y  L EM  KG +  V+ Y      L +AGR+    ++  K++  G
Sbjct: 310 CMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDG 364


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 198/426 (46%), Gaps = 22/426 (5%)

Query: 168  TSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP 227
             + S++      +I+ V +++   F+    +   +D C + ++  LV  +L RF +    
Sbjct: 1368 ATASHEDAEFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVA 1427

Query: 228  AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAM 286
            AF FF W G + G+ H + +Y+ M+ ILG+ +QF+ M  ++ +M E  GL+S+ T    M
Sbjct: 1428 AFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVM 1487

Query: 287  NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
               A A    +A+  F  M+++        +N LL+ L + +  K A+ +F +L+    P
Sbjct: 1488 RRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPP 1547

Query: 347  NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
            +  ++  L+ GWC+ + L EA     EM   GF P VV +  ++E             L 
Sbjct: 1548 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1607

Query: 407  EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
            + M+ +   PNV +YTI++    K                     +A+ Y  LI   G  
Sbjct: 1608 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1667

Query: 447  RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             R++  Y +++EM   G  P+  T+N LI         + A+++  +M      P I TY
Sbjct: 1668 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1727

Query: 507  NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
              ++K   +    ++   +   M R+   PD ++YT+L+  L    +  ++  +LEEM+ 
Sbjct: 1728 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 1787

Query: 567  KGMKAP 572
            KG  AP
Sbjct: 1788 KGF-AP 1792



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 372  NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
            N+M++ G    ++    ++  L    + ++AI  F  M   G   + ++  +++   CK+
Sbjct: 1469 NQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKE 1528

Query: 432  NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRI 490
             +             +R   V+      E RG  PPD  ++N L+      +M  EA+  
Sbjct: 1529 RSV------------KRARGVFQ-----ELRGTIPPDENSFNTLVHGWCKARMLKEALDT 1571

Query: 491  YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             +EM + GF P++ TY  ++++Y    +++    + DEM +R C P+  +YT+L+  L  
Sbjct: 1572 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGK 1631

Query: 551  QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              R+ EA    +++ E G+      YN     L RAGR      + ++MR +G
Sbjct: 1632 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 1684



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 27/236 (11%)

Query: 361  VKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            ++ L  A R W E ID        G   D  A N++L+ L K      A  +F+ ++   
Sbjct: 1487 MRRLAGASR-WTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTI 1545

Query: 414  PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            P P+  S+  ++  +CK                R +    D ++EM++ G  P  +TY +
Sbjct: 1546 P-PDENSFNTLVHGWCKA---------------RMLKEALDTMEEMKQHGFSPSVVTYTS 1589

Query: 474  LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            L++   ++K       +  EM +    P + TY ++M +  + G        +D++   G
Sbjct: 1590 LVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG 1649

Query: 534  CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF---AADLSRA 586
              PD + Y  LI  L    R  +AY  +EEM   G+   V  +N     A D S+A
Sbjct: 1650 VAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQA 1705



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            G A ++  YNS++ ILGRA + E   S++EEM   G+  ++ TF   ++A     + + A
Sbjct: 1649 GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENA 1708

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----TPNLTTYTVL 354
            + +   M +      + T   LL+   + +  K   +L   + H F    +P+ +TYT+L
Sbjct: 1709 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVK---ILLFLVCHMFRKDISPDFSTYTLL 1765

Query: 355  LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            +   CR   + ++     EM+ KGF P     ++++E L K
Sbjct: 1766 VSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 1806



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            GF+ +  TY S++      + F+T+ ++L+EM ++    ++ T+ I M+A   A   ++A
Sbjct: 1579 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 1638

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            +  F+ + +          N L+  LGR+   ++A  + ++++     PN+TT+  L+  
Sbjct: 1639 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 1698

Query: 358  WC---RVKNLME------------------------AGRVWNE--------MIDKGFKPD 382
             C   + +N ++                          R W +        M  K   PD
Sbjct: 1699 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 1758

Query: 383  VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
               + +++  L + GK + +    E M +KG +P   ++ +++ K  K+N
Sbjct: 1759 FSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRN 1808


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 198/426 (46%), Gaps = 22/426 (5%)

Query: 168  TSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP 227
             + S++      +I+ V +++   F+    +   +D C + ++  LV  +L RF +    
Sbjct: 1409 ATASHEDAEFEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVA 1468

Query: 228  AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAM 286
            AF FF W G + G+ H + +Y+ M+ ILG+ +QF+ M  ++ +M E  GL+S+ T    M
Sbjct: 1469 AFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVM 1528

Query: 287  NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
               A A    +A+  F  M+++        +N LL+ L + +  K A+ +F +L+    P
Sbjct: 1529 RRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPP 1588

Query: 347  NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
            +  ++  L+ GWC+ + L EA     EM   GF P VV +  ++E             L 
Sbjct: 1589 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1648

Query: 407  EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
            + M+ +   PNV +YTI++    K                     +A+ Y  LI   G  
Sbjct: 1649 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1708

Query: 447  RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             R++  Y +++EM   G  P+  T+N LI         + A+++  +M      P I TY
Sbjct: 1709 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1768

Query: 507  NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
              ++K   +    ++   +   M R+   PD ++YT+L+  L    +  ++  +LEEM+ 
Sbjct: 1769 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 1828

Query: 567  KGMKAP 572
            KG  AP
Sbjct: 1829 KGF-AP 1833



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 372  NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
            N+M++ G    ++    ++  L    + ++AI  F  M   G   + ++  +++   CK+
Sbjct: 1510 NQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKE 1569

Query: 432  NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRI 490
             +             +R   V+      E RG  PPD  ++N L+      +M  EA+  
Sbjct: 1570 RSV------------KRARGVFQ-----ELRGTIPPDENSFNTLVHGWCKARMLKEALDT 1612

Query: 491  YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             +EM + GF P++ TY  ++++Y    +++    + DEM +R C P+  +YT+L+  L  
Sbjct: 1613 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGK 1672

Query: 551  QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              R+ EA    +++ E G+      YN     L RAGR      + ++MR +G
Sbjct: 1673 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 1725



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 27/236 (11%)

Query: 361  VKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            ++ L  A R W E ID        G   D  A N++L+ L K      A  +F+ ++   
Sbjct: 1528 MRRLAGASR-WTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTI 1586

Query: 414  PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            P P+  S+  ++  +CK                R +    D ++EM++ G  P  +TY +
Sbjct: 1587 P-PDENSFNTLVHGWCKA---------------RMLKEALDTMEEMKQHGFSPSVVTYTS 1630

Query: 474  LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            L++   ++K       +  EM +    P + TY ++M +  + G        +D++   G
Sbjct: 1631 LVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG 1690

Query: 534  CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF---AADLSRA 586
              PD + Y  LI  L    R  +AY  +EEM   G+   V  +N     A D S+A
Sbjct: 1691 VAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQA 1746



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            G A ++  YNS++ ILGRA + E   S++EEM   G+  ++ TF   ++A     + + A
Sbjct: 1690 GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENA 1749

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----TPNLTTYTVL 354
            + +   M +      + T   LL+   + +  K   +L   + H F    +P+ +TYT+L
Sbjct: 1750 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVK---ILLFLVCHMFRKDISPDFSTYTLL 1806

Query: 355  LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            +   CR   + ++     EM+ KGF P     ++++E L K
Sbjct: 1807 VSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEK 1847



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 37/230 (16%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            GF+ +  TY S++      + F+T+ ++L+EM ++    ++ T+ I M+A   A   ++A
Sbjct: 1620 GFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREA 1679

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            +  F+ + +          N L+  LGR+   ++A  + ++++     PN+TT+  L+  
Sbjct: 1680 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 1739

Query: 358  WC---RVKNLME------------------------AGRVWNE--------MIDKGFKPD 382
             C   + +N ++                          R W +        M  K   PD
Sbjct: 1740 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 1799

Query: 383  VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
               + +++  L + GK + +    E M +KG +P   ++ +++ K  K+N
Sbjct: 1800 FSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRN 1849


>gi|413932621|gb|AFW67172.1| PHD finger protein [Zea mays]
          Length = 1166

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 199/424 (46%), Gaps = 56/424 (13%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG-- 256
           +A LD  G  L+  LV DVL R R+  + AFRFF WA  + G+ H   TYN ++ IL   
Sbjct: 457 KAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYNHEPTTYNDIIDILSGT 516

Query: 257 --RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK--- 311
             ++RQF  + ++L+ M   G  S+    + +    A  E K    + +L  K + +   
Sbjct: 517 RYKSRQFGVLCNVLDHMKRHGSRSVPVEDL-LEILRAYTE-KHLTHMRKLAKKRRVRMRT 574

Query: 312 -AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               D +N LL+   +  + KEA+ +F ++K +   N  TY+ L  GWCR ++  +A +V
Sbjct: 575 PPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKV 634

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---PSPNVRSYTIMIWK 427
             EMI     P+   +   +      G  S+A +LFE M+ +G    SP  ++Y+IMI  
Sbjct: 635 LEEMIQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVA 694

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
             K +               RM+  ++LL +M   GC PD  TY  LI+ M +    D A
Sbjct: 695 LAKAD---------------RMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAA 739

Query: 488 VRIYKEMVRSGF-------------------------KPTIHTYNMIMKSYFQTGNYEMG 522
            R+  EM R+GF                         +P++HTYNM+M  +F+ G     
Sbjct: 740 YRVLDEMGRAGFPPDIVTHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRA 799

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +  EM +R C    ++Y ++I GL     +  A   L+E++ + MK   L Y KF A 
Sbjct: 800 LDICLEMDKRRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMK---LSYKKFDAI 856

Query: 583 LSRA 586
           + R+
Sbjct: 857 MLRS 860


>gi|357131182|ref|XP_003567219.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Brachypodium distachyon]
          Length = 518

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 203/464 (43%), Gaps = 48/464 (10%)

Query: 139 VNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNM 198
           +N   +S+  +     DGE +G +                R ++ V    +   +     
Sbjct: 28  LNASRLSTSREPVAGGDGESEGEDDPFSFPDHQQLPADVVRGVDAVVAAAEGSHADATRA 87

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA 258
             +L+ CG   S  LVV  L R R++   A   F WA  +P +A      +SM++IL + 
Sbjct: 88  RTLLERCGAAASETLVVAALSRLRNSWAAAHAAFLWAAAQPDYAPGRHACHSMLAILAKH 147

Query: 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           R+F+   ++L+EM  K L S     + +  + AA++  +A+A F  +  + F+ GV   +
Sbjct: 148 RRFDDARALLDEMRRKSLASPRAVLLLVRRYCAARDVTRAIAAFHALPSFGFEPGVAQFH 207

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR-VKNLMEAGRVWNEMIDK 377
            LL  L R K  ++A+ L    +  F     ++ ++L GWC  V ++ EA R W  M  +
Sbjct: 208 GLLSALCRYKNVQDAEHLLLSSEKEFPFETKSFNIVLNGWCNMVCSVREAKRFWTAMEVR 267

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G + DV ++  M+    K G     +KLF  MK  G  P+ + Y          NA VY 
Sbjct: 268 GIERDVASYGSMISCFSKAGSLDSVLKLFNGMKEAGIVPDRKVY----------NAVVY- 316

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                    R +D    L++ MEERG PPD  TYN+LI  +   +   EA +++ EM+  
Sbjct: 317 ----ALAKGRCVDEAKALVRSMEERGTPPDTATYNSLIGPLCKARQVQEATQMFDEMIGR 372

Query: 498 GF--------------------------------KPTIHTYNMIMKSYFQTGNYEMGRKV 525
           G                                 +P I TY M+++ + +   ++   K+
Sbjct: 373 GLLASVRTFHALFDVATSPSEVFDVLDKMKTLHCEPEIDTYIMLIRKFCRWRQHDSVEKL 432

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           W  M   G  PD ++Y VLI GL    +  EA KY EEM  KG 
Sbjct: 433 WSAMPTNGLNPDRSAYIVLIHGLFLNGKLEEAAKYYEEMKAKGF 476



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 39/189 (20%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYNS++  L +ARQ +    M +EM  +GLL S+ TF    +   +  E    
Sbjct: 338 GTPPDTATYNSLIGPLCKARQVQEATQMFDEMIGRGLLASVRTFHALFDVATSPSE---- 393

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             +F++++K K      T++C                          P + TY +L+  +
Sbjct: 394 --VFDVLDKMK------TLHC-------------------------EPEIDTYIMLIRKF 420

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR +      ++W+ M   G  PD  A+ +++ GL   GK  +A K +E MKAKG  P  
Sbjct: 421 CRWRQHDSVEKLWSAMPTNGLNPDRSAYIVLIHGLFLNGKLEEAAKYYEEMKAKGFPPEQ 480

Query: 419 RSYT-IMIW 426
           ++ + I  W
Sbjct: 481 KTESMIQAW 489


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 171/365 (46%), Gaps = 23/365 (6%)

Query: 258 ARQFETMVSMLEEMGEKGLLSM--ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           ++QF  +   L +M E     +  E F +   A+  A     A+  F  M  +  KAGV 
Sbjct: 100 SKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVG 159

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            ++ LL  L + K  K+AQ  FDK+     PN  TY++L+ GW  V +  EA +++ EM 
Sbjct: 160 DVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMR 219

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK----- 430
           ++G   DVVA+N +LE L K G   +A KLF  M + G +P+  SY+I I  +C+     
Sbjct: 220 ERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIH 279

Query: 431 ---------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                           N   Y C++       ++D  Y LL EM ERG  PD  +YNA+ 
Sbjct: 280 SAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQ 339

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    ++A+R+   M +    P  HTYNM++K   + G ++    VW  M  RG  
Sbjct: 340 AFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFY 399

Query: 536 PDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
           P  ++Y V++ G   +  +  EA KY E M++ G+             +   G S  +D 
Sbjct: 400 PAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSEQIDV 459

Query: 595 LAQKM 599
           LA KM
Sbjct: 460 LAGKM 464



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 26/315 (8%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A R F   GD  G        + ++ +L + +  +      +++  + + + +T+ I M 
Sbjct: 142 AIRAFHQMGDF-GVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMR 200

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTP 346
            +    +  +A  +FE M +      V   N LLE L +     EA  LF ++  +   P
Sbjct: 201 GWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAP 260

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +  +Y++ +  +C V ++  A +V + M      P+V  +N +++ L K  K  +A +L 
Sbjct: 261 DACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLL 320

Query: 407 EVMKAKGPSPNVRSYTIMIWKF----CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           + M  +G SP++ SY   I  F    C+ N A+                   L+  ME+ 
Sbjct: 321 DEMIERGVSPDLWSYN-AIQAFHCDHCEVNKAL------------------RLISRMEKE 361

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF-QTGNYEM 521
            C PD  TYN ++K++      D    ++  M   GF P   TY +++  +  + G  E 
Sbjct: 362 NCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEE 421

Query: 522 GRKVWDEMIRRGCCP 536
             K ++ MI  G  P
Sbjct: 422 ACKYFEMMIDDGIPP 436



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 438 CLITGFG--NRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           C   GF   + ++  +++D L +M E R C      +  + +      +P +A+R + +M
Sbjct: 90  CKNLGFSAHSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQM 149

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G K  +   + ++    +  + +  ++ +D+ +     P+  +Y++L+ G      S
Sbjct: 150 GDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDK-VNVEVMPNAKTYSILMRGWGDVGDS 208

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            EA K  EEM E+G    V+ YN     L + G
Sbjct: 209 SEARKLFEEMRERGCAVDVVAYNSLLEALCKGG 241


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 194/389 (49%), Gaps = 29/389 (7%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +NLS  LV  +L RFR   R A     WA    G  H+S  Y+  + ILG+A++++ M  
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            +E M    L+++ T    M  FA A E ++AV IF+ + ++  +   +++N LL+ L +
Sbjct: 143 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K  ++A+++  +LK   TPN  T+ + + GWC+   + EA     EM   GF+P V+++
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262

Query: 387 NIMLEGLLKIGKRSDAIKLFEV---MKAKGPSPNVRSYTIMIWKF--------------- 428
             ++       ++ + IK++E+   M+A G  PN  +YT ++                  
Sbjct: 263 TTIIRCYC---QQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319

Query: 429 -----CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQK 482
                CK ++  Y CLI       R++    + + EM E G   +  TYN++I +     
Sbjct: 320 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHD 379

Query: 483 MPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNS 540
             D+A+ + KEM  S    P +HTY  +++S F+ G+  E+G+ + + + +     D+++
Sbjct: 380 EEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDEST 439

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           YT LI  L   +    AY   EEM+ + +
Sbjct: 440 YTFLIQRLCRANMCEWAYCLFEEMISQDI 468



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 23/231 (9%)

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W R+K  +E  R      DK    + VA   ++      G+  +A+ +F+ +   G   N
Sbjct: 137 WDRMKEFVERMRG-----DKLVTLNTVAK--IMRRFAGAGEWEEAVGIFDRLGEFGLEKN 189

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             S  +++   CK+               +R++    +L +++     P+  T+N  I  
Sbjct: 190 TESMNLLLDTLCKE---------------KRVEQARVVLLQLKSH-ITPNAHTFNIFIHG 233

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                  +EA+   +EM   GF+P + +Y  I++ Y Q   +    ++  EM   G  P+
Sbjct: 234 WCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPN 293

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +YT ++  L +Q    EA +    M   G K   L YN     L+RAGR
Sbjct: 294 SITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 20/256 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF     +Y +++    +  +F  +  ML EM   G      T+   M++  A KE ++A
Sbjct: 254 GFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEA 313

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLG 356
           + +   M +   K      NCL+  L R+   +EA+ +F  +  +   + N +TY  ++ 
Sbjct: 314 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 373

Query: 357 GWCRVKNLMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP- 414
            +C      +A  +  EM       PDV  +  +L    K G   +  KL + M  K   
Sbjct: 374 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           S +  +YT +I + C+ N   +                Y L +EM  +   P   T   L
Sbjct: 434 SLDESTYTFLIQRLCRANMCEW---------------AYCLFEEMISQDITPRHRTCLLL 478

Query: 475 IKLMKIQKMPDEAVRI 490
           ++ +K + M + A RI
Sbjct: 479 LEEVKKKNMHESAERI 494



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGL-LS 278
           F  A R A R       + G   +S  YN ++  L RA + E    +   EM E G+ ++
Sbjct: 310 FEEALRVATRM-----KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSIN 364

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGVDTINCLLEN-LGRSKLPKEAQLL 336
             T+   +  +    E  KA+ + + M         V T   LL +   R  + +  +LL
Sbjct: 365 TSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLL 424

Query: 337 FDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            + + KH  + + +TYT L+   CR      A  ++ EMI +   P      ++LE + K
Sbjct: 425 KEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKK 484

Query: 396 IGKRSDAIKLFEVMKA 411
                 A ++  +MK 
Sbjct: 485 KNMHESAERIEHIMKT 500


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 194/389 (49%), Gaps = 29/389 (7%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +NLS  LV  +L RFR   R A     WA    G  H+S  Y+  + ILG+A++++ M  
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            +E M    L+++ T    M  FA A E ++AV IF+ + ++  +   +++N LL+ L +
Sbjct: 143 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K  ++A+++  +LK   TPN  T+ + + GWC+   + EA     EM   GF+P V+++
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262

Query: 387 NIMLEGLLKIGKRSDAIKLFEV---MKAKGPSPNVRSYTIMIWKF--------------- 428
             ++       ++ + IK++E+   M+A G  PN  +YT ++                  
Sbjct: 263 TTIIRCYC---QQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319

Query: 429 -----CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQK 482
                CK ++  Y CLI       R++    + + EM E G   +  TYN++I +     
Sbjct: 320 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHD 379

Query: 483 MPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNS 540
             D+A+ + KEM  S    P +HTY  +++S F+ G+  E+G+ + + + +     D+++
Sbjct: 380 EEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDEST 439

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           YT LI  L   +    AY   EEM+ + +
Sbjct: 440 YTFLIQRLCRANMCEWAYCLFEEMISQDI 468



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 23/231 (9%)

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W R+K  +E  R      DK    + VA   ++      G+  +A+ +F+ +   G   N
Sbjct: 137 WDRMKEFVERMRG-----DKLVTLNTVAK--IMRRFAGAGEWEEAVGIFDRLGEFGLEKN 189

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             S  +++   CK+               +R++    +L +++     P+  T+N  I  
Sbjct: 190 TESMNLLLDTLCKE---------------KRVEQARVVLLQLKSH-ITPNAHTFNIFIHG 233

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                  +EA+   +EM   GF+P + +Y  I++ Y Q   +    ++  EM   G  P+
Sbjct: 234 WCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPN 293

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +YT ++  L +Q    EA +    M   G K   L YN     L+RAGR
Sbjct: 294 SITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 20/256 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF     +Y +++    +  +F  +  ML EM   G      T+   M++  A KE ++A
Sbjct: 254 GFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEA 313

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLG 356
           + +   M +   K      NCL+  L R+   +EA+ +F  +  +   + N +TY  ++ 
Sbjct: 314 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 373

Query: 357 GWCRVKNLMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP- 414
            +C      +A  +  EM       PDV  +  +L    K G   +  KL + M  K   
Sbjct: 374 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           S +  +YT +I + C+ N   +                Y L +EM  +   P   T   L
Sbjct: 434 SLDESTYTFLIQRLCRANMCEW---------------AYCLFEEMISQDITPRHRTCLLL 478

Query: 475 IKLMKIQKMPDEAVRI 490
           ++ +K + M + A RI
Sbjct: 479 LEEVKKKNMHESAERI 494



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGL-LS 278
           F  A R A R       + G   +S  YN ++  L RA + E    +   EM E G+ ++
Sbjct: 310 FEEALRVATRM-----KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSIN 364

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGVDTINCLLEN-LGRSKLPKEAQLL 336
             T+   +  +    E  KA+ + + M         V T   LL +   R  + +  +LL
Sbjct: 365 TSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLL 424

Query: 337 FDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            + + KH  + + +TYT L+   CR      A  ++ EMI +   P      ++LE + K
Sbjct: 425 KEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKK 484

Query: 396 IGKRSDAIKLFEVMKA 411
                 A ++  +MK 
Sbjct: 485 KNMHESAERIEHIMKT 500


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 188/386 (48%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+++  LG+A QF+  + +L EM + G +  + T+   ++    A    +A
Sbjct: 74  GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEA 133

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F  M +        T N L+  LG+    ++A  L +++ +H   P++ TY+ L+ G
Sbjct: 134 FTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITG 193

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +    ++A +++ EM  +G KPD +    +++ L K G+  DA++L + MK +G  P 
Sbjct: 194 LGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPG 253

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I  F                    CK +   Y+CLITG     ++D    +LK
Sbjct: 254 VVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLK 313

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +ME+ GCPPD +TYN LI  +    + ++A R++  M   G  P + TY+ ++ +  +  
Sbjct: 314 KMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAA 373

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    +++EM   G  PD  +Y  +I  L    +  +A +   EM  KG+   V+ YN
Sbjct: 374 RVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYN 433

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
            F   L R GR     ++ + M+ SG
Sbjct: 434 AFLNSLGRGGRFKEARKIFEDMKESG 459



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 192/397 (48%), Gaps = 26/397 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AF  F    ++ G   ++ TYNS++  LG+  + +  + +LEEM   G    + T+   +
Sbjct: 133 AFTLFAEMRER-GCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLI 191

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
                  E  KA  +F+ M +   K    T   L++ LG++    +A  L D++K R   
Sbjct: 192 TGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVK 251

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P + TY  L+ G+ +V +L+EA  + +EM   G KPDVV ++ ++ GL+K  +  +A ++
Sbjct: 252 PGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQV 311

Query: 406 FEVMKAKGPSPNVRSYTIMI--------------------WKFCKQNAAVYTCLITGFGN 445
            + M+ +G  P+  +Y  +I                     K C  +   Y+ LIT  G 
Sbjct: 312 LKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGK 371

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             R++    L +EME  G  PD  TY ++I ++      D+A R++ EM   G  P + T
Sbjct: 372 AARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVIT 431

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN  + S  + G ++  RK++++M   G  PD  +Y  L+ GL       +A   L+E++
Sbjct: 432 YNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELI 491

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           E+G     L +++    L+  G    +DE  + ++F+
Sbjct: 492 EQGCAFDSLKFDECLEILTSWGN---VDEAHELLQFA 525



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 173/351 (49%), Gaps = 18/351 (5%)

Query: 240 GF-AHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKK 297
           GF + N  TYNS+++ L +A Q E    + EE+   K    + ++   +N+   A + + 
Sbjct: 3   GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLG 356
           A+ +   M     K  + T N L++ LG++    EA +LL +   +   P++ TY  L+ 
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIS 122

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
              +   L EA  ++ EM ++G  PD   +N ++ GL K+G+   A++L E M+  G  P
Sbjct: 123 TLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V +               Y+ LITG G        + L +EM+ RG  PD +T+ AL+ 
Sbjct: 183 DVMT---------------YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +      D+A+ +  EM   G KP + TYN ++  + + G+      + DEM R GC P
Sbjct: 228 ALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           D  +Y+ LI GLI   +  EA + L++M ++G     + YN     L +AG
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 20/287 (6%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V T N LL  L ++   +EAQLLF++LK  ++TP++ +Y+ L+    R      A  V  
Sbjct: 9   VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVA 68

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM  KG KP++  +N +++ L K G+  +A++L   M+  G  P+VR+Y           
Sbjct: 69  EMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYN---------- 118

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                CLI+  G   R+   + L  EM ERGC PD  TYN+LI  +       +A+ + +
Sbjct: 119 -----CLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM R G  P + TY+ ++    + G      K++ EM RRG  PD  ++T L+  L    
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAG 233

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG---RSY-VLDEL 595
           R  +A + L+EM E+G+K  V+ YN   A   + G    +Y +LDE+
Sbjct: 234 RVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 188/424 (44%), Gaps = 57/424 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           ++ G   +  TY+S+++ LG+  +      + +EM  +G      TF   M+A   A   
Sbjct: 176 ERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRV 235

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             A+ + + M +   K GV T N L+   G+     EA  L D++K     P++ TY+ L
Sbjct: 236 DDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL 295

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G  +   L EA +V  +M  +G  PD + +N ++ GL K G  +DA +LF+ MK+KG 
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGC 355

Query: 415 SPNVRSYTIMIWKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYD 454
           +P+V +Y+ +I    K    ++A V                Y  +IT  G   ++D    
Sbjct: 356 NPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADR 415

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  EM  +G  PD +TYNA +  +       EA +I+++M  SG  P + TY+ ++    
Sbjct: 416 LFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLS 475

Query: 515 QTGNYEMGRKVWDEMIRRGCC-----------------------------------PDDN 539
           +T   +    +  E+I +GC                                    P  +
Sbjct: 476 KTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGAS 535

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           SY  LI  L    R  EA+  LE++ E+G K  ++ Y+   + L + G+     EL ++M
Sbjct: 536 SYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595

Query: 600 RFSG 603
              G
Sbjct: 596 SKRG 599



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 168/374 (44%), Gaps = 26/374 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           G KPG      TYN++++  G+        ++L+EM   G    + T+   +     A +
Sbjct: 249 GVKPGVV----TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ 304

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
             +A  + + M K        T N L+  LG++ L  +A  LFD++K +   P++ TY+ 
Sbjct: 305 LDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYST 364

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+    +   +  A  ++ EM   G +PD+  +  ++  L K G+  DA +LF  M+ KG
Sbjct: 365 LITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG 424

Query: 414 PSPNVRSYTIM---------------IWKFCKQ-----NAAVYTCLITGFGNRRRMDIVY 453
            SP+V +Y                  I++  K+     + A Y  L+ G    + +D   
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDAC 484

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            LLKE+ E+GC  D L ++  ++++      DEA  + +     G  P   +YN ++ + 
Sbjct: 485 GLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDAL 544

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G         +++  +G  PD  SY+ LI  L    +   A++ LEEM ++G+K   
Sbjct: 545 AKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSP 604

Query: 574 LDYNKFAADLSRAG 587
             Y+     L   G
Sbjct: 605 RSYSNLVRKLQDWG 618



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 16/229 (6%)

Query: 377 KGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           KGF  P+VV +N +L  L K G+  +A  LFE +KA   +P+V SY+             
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYS------------- 48

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
             CLI   G   + +   +++ EM+ +GC P+  TYN L+  +      DEA+R+  EM 
Sbjct: 49  --CLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMR 106

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
            +G  P + TYN ++ +  + G       ++ EM  RGC PD  +Y  LI GL    RS 
Sbjct: 107 DNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQ 166

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
           +A + LEEM   G    V+ Y+     L + G +    +L Q+M+  G+
Sbjct: 167 KAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR 215


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 187/373 (50%), Gaps = 21/373 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A  FF WAG++ GF H+  TYN +M++L   + +    ++ EEM + G+  +  +F I +
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--F 344
            +FA  +    AV  FE+M + + K  + T   L++ L ++ + ++A  +F ++      
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P+   +T ++    + K + EA  V+ +M   GF PD +A+N M++GL K G   +A+K
Sbjct: 222 PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALK 281

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           + + M AK   P   +Y I++   CK             G   R +   +L + M   G 
Sbjct: 282 VLDNMLAKACVPTEVTYGILVNSLCKA------------GTLERAE---ELFRVMAASGF 326

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+ + Y +LI          EA  ++ EMV +G++P + T+ +++    ++GN+E   K
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
            ++EM+R GC P+  +YT +I GL    R   A++ ++ M+  G     + Y        
Sbjct: 387 SFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446

Query: 585 RAGRSYVLDELAQ 597
           + GR   LDE AQ
Sbjct: 447 KLGR---LDEAAQ 456



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 186/395 (47%), Gaps = 31/395 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           +K GF  ++  YN+M+  L +A   +  + +L+ M  K  +  E T+ I +N+   A   
Sbjct: 252 EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTL 311

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
           ++A  +F +M    F+        L+    +S   KEA  LFD++ +  + P++ T+TV+
Sbjct: 312 ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+  N  +A + + EM+  G KP+VV +  +++GL KIG+ ++A ++ + M A G 
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGC 431

Query: 415 SPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGN----RRRMD 450
            P+  +Y  ++  FCK                     N  +Y+ L+ G  +     + +D
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLD 491

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            +++  K   E   P  GL  + ++ L K  ++ DEA RI++ MV  G KP   TYN+++
Sbjct: 492 DLFEQSKAAAETLDP--GLCCSIIVGLCKTGRL-DEACRIFQRMVSEGCKPDATTYNILI 548

Query: 511 KSYFQT--GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
               ++     E    +  ++ + G  PD  +YT L  GL        A K LEE   +G
Sbjct: 549 NGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRG 608

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             A V+ Y      L   G+      L Q+M   G
Sbjct: 609 WNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG 643



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 38/381 (9%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G+  +  T+  M+  L ++  FE      EEM   G   ++ T+   +   +      
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A  I + M  +       T  CLL+   +  +L + AQLL +  K   +PNL  Y+ L+
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 356 GGWC-------RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            G C        + +L E  +   E +D G    ++       GL K G+  +A ++F+ 
Sbjct: 478 NGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIV------GLCKTGRLDEACRIFQR 531

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ----------------------NAAVYTCLITGFGNR 446
           M ++G  P+  +Y I+I   C+                       +A  YT L  G    
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKI 591

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +D    +L+E   RG   D + Y AL   +  Q   D AV +++EMVR G  P    Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             I+    +    E   K +DEMI +G  P   +YT L+  L       EA+   E ML 
Sbjct: 652 CCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLA 711

Query: 567 KG-MKAPVLDYNKFAADLSRA 586
           +G +   V+ Y+       +A
Sbjct: 712 RGELVGSVMIYDALIHGFCKA 732



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 136/306 (44%), Gaps = 19/306 (6%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSK---LPKEAQLLFDKLKHRFTPNLTTYTV 353
           +A  IF+ M     K    T N L+  L RS+   + +   LL D  K  + P+  TYT 
Sbjct: 524 EACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTP 583

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G C++  +  A ++  E   +G+  DVVA+  +  GL   G+   A+ LF+ M  +G
Sbjct: 584 LCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG 643

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            +P+               AA Y C+I G    ++++       EM  +G  P   TY A
Sbjct: 644 GAPD---------------AAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           L++ +      DEA   ++ M+  G    ++  Y+ ++  + +    +   K++++MI R
Sbjct: 689 LVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  P   +   L  GL+   ++ +A + L+EM   G       +      L ++  S  L
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKL 808

Query: 593 DELAQK 598
            +L Q+
Sbjct: 809 LKLVQE 814



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 20/229 (8%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           GF+ DV  +N ++  L+     S    + E M   G +PN  S+ I              
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNI-------------- 159

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI  F   RR D      + M+ + C PD  T+  L+  +    M ++A  ++ EM+  
Sbjct: 160 -LIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAM 218

Query: 498 GFKP---TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           GF P    +HT   ++++  +    +  R+V+ +M + G  PD  +Y  +I GL     +
Sbjct: 219 GFVPPDRALHT--AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHA 276

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EA K L+ ML K      + Y      L +AG     +EL + M  SG
Sbjct: 277 QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 128/321 (39%), Gaps = 52/321 (16%)

Query: 155 DGECDGNNSESEITSVSYKSTADPREIER--VCKVIDELFSLDRNMEA-------VLDEC 205
           +G CDG + E  +  +  +S A    ++    C +I  L    R  EA       V + C
Sbjct: 478 NGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC 537

Query: 206 GIN-LSHNLVVDVLERFRHARRPAFRFFCWAGD--KPGFAHNSRTYNSMMSILGRARQFE 262
             +  ++N++++ L R R  R    R F    D  K G+  ++ TY  +   L +  + +
Sbjct: 538 KPDATTYNILINGLCRSRENRVE--RAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVD 595

Query: 263 TMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
             V MLEE   +G    +  +           +  +AV++F+ M +           C++
Sbjct: 596 RAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCII 655

Query: 322 ENLGRSKLPKEAQLLFDKLK----------------------------HRFTPNLT---- 349
             L + K  ++A   FD++                             HRF   L     
Sbjct: 656 NGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGEL 715

Query: 350 -----TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
                 Y  L+ G+C+   +  A +++ +MI +G  P  V    + +GL++ GK   A +
Sbjct: 716 VGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQE 775

Query: 405 LFEVMKAKGPSPNVRSYTIMI 425
           L + M A G  P+  ++T ++
Sbjct: 776 LLQEMAAGGSPPHAATFTAIL 796


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 187/373 (50%), Gaps = 21/373 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A  FF WAG++ GF H+  TYN +M++L   + +    ++ EEM + G+  +  +F I +
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--F 344
            +FA  +    AV  FE+M + + K  + T   L++ L ++ + ++A  +F ++      
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P+   +T ++    + K + EA  V+ +M   GF PD +A+N M++GL K G   +A+K
Sbjct: 222 PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALK 281

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           + + M AK   P   +Y I++   CK             G   R +   +L + M   G 
Sbjct: 282 VLDNMLAKACVPTEVTYGILVNSLCKA------------GTLERAE---ELFRVMAASGF 326

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+ + Y +LI          EA  ++ EMV +G++P + T+ +++    ++GN+E   K
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
            ++EM+R GC P+  +YT +I GL    R   A++ ++ M+  G     + Y        
Sbjct: 387 SFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446

Query: 585 RAGRSYVLDELAQ 597
           + GR   LDE AQ
Sbjct: 447 KLGR---LDEAAQ 456



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 31/395 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           +K GF  ++  YN+M+  L +A   +  + +L+ M  K  +  E T+ I +N+   A   
Sbjct: 252 EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTL 311

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
           ++A  +F +M    F+        L+    +S   KEA  LFD++ +  + P++ T+TV+
Sbjct: 312 ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+  N  +A + + EM+  G KP+VV +  +++GL KIG+ ++A ++ + M A G 
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGC 431

Query: 415 SPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGN----RRRMD 450
            P+  +Y  ++  FCK                     N  +Y+ L+ G  +       +D
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLD 491

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            +++  K   E   P  GL  + ++ L K  ++ DEA RI++ MV  G KP   TYN+++
Sbjct: 492 DLFEQSKAAAENLDP--GLCCSIIVGLCKTGRL-DEACRIFQRMVSEGCKPDATTYNILI 548

Query: 511 KSYFQT--GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
               ++     E    +  ++   G  PD  +YT L  GL        A K LEE   +G
Sbjct: 549 NGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRG 608

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             A V+ Y      L   G+      L Q+M   G
Sbjct: 609 WNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG 643



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 171/374 (45%), Gaps = 27/374 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  NS  Y S++    ++ + +   S+ +EM E G    + T  + ++    +   ++A
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQA 384

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
              FE M +   K  V T   +++ L +  ++    +++   + H   P+  TY  LL G
Sbjct: 385 AKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDG 444

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPS- 415
           +C++  L EA ++ +E+      P++  ++ +++GL   G   + +  LFE  KA   + 
Sbjct: 445 FCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENL 504

Query: 416 -PNV------------------RSYTIMIWKFCKQNAAVYTCLITGFGNRR--RMDIVYD 454
            P +                  R +  M+ + CK +A  Y  LI G    R  R++  + 
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFA 564

Query: 455 LLKEMEERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           LL ++E  G  PD +TY  L I L KI ++ D AV++ +E    G+   +  Y  +    
Sbjct: 565 LLHDLEMVGYLPDAVTYTPLCIGLCKIGEV-DRAVKMLEEASSRGWNADVVAYTALCTGL 623

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
              G  +    ++ EM+R+G  PD  +Y  +I GLI   +  +A K+ +EM+ KG K  V
Sbjct: 624 CYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTV 683

Query: 574 LDYNKFAADLSRAG 587
             Y      L  AG
Sbjct: 684 ATYTALVQALCHAG 697



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 169/428 (39%), Gaps = 63/428 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G+  +  T+  M+  L ++  FE      EEM   G   ++ T+   +   +      
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A  I + M  +       T  CLL+   +  +L + AQLL +  K   +PNL  Y+ L+
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 356 GGWC------------------------------------RVKNLMEAGRVWNEMIDKGF 379
            G C                                    +   L EA R++  M+ +G 
Sbjct: 478 KGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC 537

Query: 380 KPDVVAHNIMLEGLLKI--GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------- 430
           KPD   +NI++ GL +    +   A  L   ++  G  P+  +YT +    CK       
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRA 597

Query: 431 -------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                         +   YT L TG   + ++D    L +EM  +G  PD   Y  +I  
Sbjct: 598 VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIING 657

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CC 535
           L+K +K+ D A + + EM+  G KPT+ TY  ++++    GN +     ++ M+ RG   
Sbjct: 658 LIKGKKLED-ACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELV 716

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
                Y  LI G     +   A K  E+M+ +G     +        L R+G++    EL
Sbjct: 717 GSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQEL 776

Query: 596 AQKMRFSG 603
            Q+M   G
Sbjct: 777 LQEMAAGG 784



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 135/306 (44%), Gaps = 19/306 (6%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSK---LPKEAQLLFDKLKHRFTPNLTTYTV 353
           +A  IF+ M     K    T N L+  L RS+   + +   LL D     + P+  TYT 
Sbjct: 524 EACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTP 583

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G C++  +  A ++  E   +G+  DVVA+  +  GL   G+   A+ LF+ M  +G
Sbjct: 584 LCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG 643

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            +P+               AA Y C+I G    ++++       EM  +G  P   TY A
Sbjct: 644 GAPD---------------AAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           L++ +      DEA   ++ M+  G    ++  Y+ ++  + +    +   K++++MI R
Sbjct: 689 LVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  P   +   L  GL+   ++ +A + L+EM   G       +      L ++  S  L
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKL 808

Query: 593 DELAQK 598
            +L Q+
Sbjct: 809 LKLVQE 814



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 20/229 (8%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           GF+ DV  +N ++  L+     S    + E M   G +PN  S+ I              
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNI-------------- 159

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI  F   RR D      + M+ + C PD  T+  L+  +    M ++A  ++ EM+  
Sbjct: 160 -LIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAM 218

Query: 498 GFKP---TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           GF P    +HT   ++++  +    +  R+V+ +M + G  PD  +Y  +I GL     +
Sbjct: 219 GFVPPDRALHT--AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHA 276

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EA K L+ ML K      + Y      L +AG     +EL + M  SG
Sbjct: 277 QEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 3/189 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G+  +   Y ++ + L    Q +  VS+ +EM  +G       +   +N     K+ + A
Sbjct: 608 GWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDA 667

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLG 356
              F+ M     K  V T   L++ L  +    EA   F+ +  R     ++  Y  L+ 
Sbjct: 668 CKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIH 727

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+   +  A +++ +MI +G  P  V    + +GL++ GK   A +L + M A G  P
Sbjct: 728 GFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787

Query: 417 NVRSYTIMI 425
           +  ++T ++
Sbjct: 788 HAATFTAIL 796


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 194/400 (48%), Gaps = 24/400 (6%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR---RPAFRFFCWAG 236
           ++E V ++I    S+ +N++  L   GI LS++L+  VL+R R +      A  FF +  
Sbjct: 38  DVEVVYRIITSSSSV-QNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFYYTD 96

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKE 294
           ++ GF H   + ++++ ILGR+R+F+ +  +L +M  K   L+S  T +I +   A    
Sbjct: 97  NRKGFYHTPYSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCS 156

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            ++ V  F    K+         N LL  L + K   +A+ ++ +LK  F PNL T+ +L
Sbjct: 157 VRQTVESFRKFKKFVSVLDTTCFNALLRTLCQEKSMTDARNVYHRLKKEFKPNLQTFNIL 216

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L GW   K   EA   + EM + G KPDVV++N +++   K  +   A K+ E M+ +  
Sbjct: 217 LSGW---KQSEEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDI 273

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SP+V                 YT +I G G   + D   D+L EM+E GC PD   YNA+
Sbjct: 274 SPDV---------------ITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAV 318

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I+   I K   +A  +  EM   G  P   TYN+  + ++ + +      ++  M+  GC
Sbjct: 319 IRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGC 378

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
            P+  S   LI      ++   A     +M+EKG  + +L
Sbjct: 379 LPNTQSCMFLIRLFRKHEKVEMALTLWNDMVEKGFGSYIL 418



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 27/269 (10%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLG---GWCRVKNLMEAGRV 370
           +++ +L  LGRS+       +  K+K   RF  +  T  ++L      C V+  +E+ R 
Sbjct: 107 SLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFRK 166

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           + + +      D    N +L  L +    +DA  ++  +K K   PN++++ I       
Sbjct: 167 FKKFVSVL---DTTCFNALLRTLCQEKSMTDARNVYHRLK-KEFKPNLQTFNI------- 215

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   L++G+      ++ ++   EM E G  PD ++YN+LI +    +  ++A ++
Sbjct: 216 --------LLSGWKQSEEAELFFE---EMRELGIKPDVVSYNSLIDVYCKDREMEKAYKV 264

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            ++M      P + TY  I+      G  +  R + +EM   GC PD  +Y  +I     
Sbjct: 265 VEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCI 324

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             R G+A   ++EM  KG+      YN F
Sbjct: 325 AKRLGDASNLMDEMASKGLSPNATTYNLF 353



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  T+N L   +   K  +EA   ++EM   G KP + +YN ++  Y +    E   KV
Sbjct: 208 PNLQTFNIL---LSGWKQSEEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKV 264

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            ++M      PD  +YT +IGGL    +  +A   L EM E G    V  YN    +   
Sbjct: 265 VEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCI 324

Query: 586 AGR----SYVLDELAQK 598
           A R    S ++DE+A K
Sbjct: 325 AKRLGDASNLMDEMASK 341



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D   +NAL++ +  +K   +A  +Y  + +  FKP + T+N+++  + Q+   E+    +
Sbjct: 175 DTTCFNALLRTLCQEKSMTDARNVYHRL-KKEFKPNLQTFNILLSGWKQSEEAEL---FF 230

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGE-AYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +EM   G  PD  SY  LI  +  +DR  E AYK +E+M E+ +   V+ Y      L  
Sbjct: 231 EEMRELGIKPDVVSYNSLID-VYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGL 289

Query: 586 AGR 588
            G+
Sbjct: 290 VGQ 292


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 213/449 (47%), Gaps = 34/449 (7%)

Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVD----VLERFRHARRPAFRFF 232
           D R +E +  ++++  S   +++A+L+     +S  L  D    VL R R     A  F+
Sbjct: 28  DTRHVESLLAILEDKAS---DVQALLERSHAAVSTKLSRDTFGGVLGRLRCTCN-ALGFY 83

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
            WA  +PGF+H   T NS++  L R       +   +    +  +S  +F I +  FAA 
Sbjct: 84  HWAATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISEPNVS--SFNILLRGFAAR 141

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTY 351
            + +   A+   M      +   T   +L  L  R  L K          ++  P L TY
Sbjct: 142 DDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTY 201

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           TVL+ G C+   +  A  V+ EMI KG+KPD++A++ +++GL K G+  +A KL ++M A
Sbjct: 202 TVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVA 261

Query: 412 KGPSPNVRSYTIMIWKFCK----QNAA----------------VYTCLITGFGNRRRMDI 451
           +GP P   +YT ++   CK    Q A                  Y+ ++TG+    +++ 
Sbjct: 262 RGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEK 321

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            + +++EM +R C PD ++Y   I+ +      +EA ++++ MV  G KP +HTY +I+ 
Sbjct: 322 AFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIID 381

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           ++ + G+      V   M +    P+   YT+++ G +   R  EA +  + +L+ G+  
Sbjct: 382 NFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILP 441

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             + YN     L +  +   +DE  + +R
Sbjct: 442 STVTYNTVINALCKLKK---MDEALELLR 467



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/510 (20%), Positives = 212/510 (41%), Gaps = 54/510 (10%)

Query: 74  LSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLATNI 133
           L+L R  H S     ++S    P    + SS + L +    +    V ++L    + +  
Sbjct: 104 LALVRGGHLSDALGFFQSSISEP----NVSSFNILLRGFAARDDFEVVNALLR-EMKSRG 158

Query: 134 LDSNCVNYRNVSSVTDDNQDSDGECDGNNSES----EITSVSYKSTAD----PREIERVC 185
           + SN   +  + S     +D D      NS S    E T  +Y    D      ++ER C
Sbjct: 159 ITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERAC 218

Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLE---RFRHARRPAFRFFCWAGDKPGFA 242
            V +E+       + +        +++ ++D L    R   AR+         G  P   
Sbjct: 219 DVFEEMIRKGYKPDII--------AYSSLIDGLSKAGRVDEARK-LVDLMVARGPPP--- 266

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAI 301
             +  Y S+++ L +  + +  V  ++EM  + L   ++T+   +  +    + +KA A+
Sbjct: 267 -TAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAV 325

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
            E M          +    +E L      +EA+ +F+ +  +   P++ TY +++  +C+
Sbjct: 326 MEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCK 385

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             ++  A  V   M     KP+   + ++++G +K  +  +A++L++ +   G  P+  +
Sbjct: 386 EGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVT 445

Query: 421 YTIMIWKFCK----------------------QNAAVYTCLITGFGNRRRMDIVYDLLKE 458
           Y  +I   CK                       +   Y+ +I G G     +  +DLL E
Sbjct: 446 YNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAE 505

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + G  PD  TY +LI+ +        A+ + +EM+++G  P  HTY  +++   ++ +
Sbjct: 506 MIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS-D 564

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +    +  EM+R G  P++ ++  +  G 
Sbjct: 565 VDAAWDLLQEMMRNGHTPNEFTFKAVEKGF 594



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 19/203 (9%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
           + + M+ F  +   ++A+ +++ + K        T N ++  L + K   EA  L  +++
Sbjct: 411 YTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQ 470

Query: 342 HR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
            R     P++ TY++++ G  +V     A  +  EMID G  PD   +  +++ L   GK
Sbjct: 471 RRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGK 530

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            S A++L E M   G  P+  +Y  ++   C+ +                +D  +DLL+E
Sbjct: 531 VSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSD----------------VDAAWDLLQE 574

Query: 459 MEERGCPPDGLTYNALIKLMKIQ 481
           M   G  P+  T+ A+ K  ++Q
Sbjct: 575 MMRNGHTPNEFTFKAVEKGFRLQ 597


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 194/389 (49%), Gaps = 29/389 (7%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +NLS  LV  +L RFR   R A     WA    G  H+S  Y+  + ILG+A++++ M  
Sbjct: 147 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 206

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            +E M    L+++ T    M  FA A E ++AV IF+ + ++  +   +++N LL+ L +
Sbjct: 207 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 266

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K  ++A+++  +LK   TPN  T+ + + GWC+   + EA     EM   GF+P V+++
Sbjct: 267 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 326

Query: 387 NIMLEGLLKIGKRSDAIKLFEV---MKAKGPSPNVRSYTIMIWKF--------------- 428
             ++       ++ + IK++E+   M+A G  PN  +YT ++                  
Sbjct: 327 TTIIRCYC---QQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 383

Query: 429 -----CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQK 482
                CK ++  Y CLI       R++    + + EM E G   +  TYN++I +     
Sbjct: 384 MKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHD 443

Query: 483 MPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNS 540
             D+A+ + KEM  S    P +HTY  +++S F+ G+  E+G+ + + + +     D+++
Sbjct: 444 EEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDEST 503

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           YT LI  L   +    AY   EEM+ + +
Sbjct: 504 YTFLIQRLCRANMCEWAYCLFEEMISQDI 532



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 23/231 (9%)

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W R+K  +E  R      DK    + VA   ++      G+  +A+ +F+ +   G   N
Sbjct: 201 WDRMKEFVERMRG-----DKLVTLNTVAK--IMRRFAGAGEWEEAVGIFDRLGEFGLEKN 253

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             S  +++   CK+               +R++    +L +++     P+  T+N  I  
Sbjct: 254 TESMNLLLDTLCKE---------------KRVEQARVVLLQLKSH-ITPNAHTFNIFIHG 297

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                  +EA+   +EM   GF+P + +Y  I++ Y Q   +    ++  EM   G  P+
Sbjct: 298 WCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPN 357

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +YT ++  L +Q    EA +    M   G K   L YN     L+RAGR
Sbjct: 358 SITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 408



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 20/256 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF     +Y +++    +  +F  +  ML EM   G      T+   M++  A KE ++A
Sbjct: 318 GFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEA 377

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLG 356
           + +   M +   K      NCL+  L R+   +EA+ +F  +  +   + N +TY  ++ 
Sbjct: 378 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 437

Query: 357 GWCRVKNLMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP- 414
            +C      +A  +  EM       PDV  +  +L    K G   +  KL + M  K   
Sbjct: 438 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 497

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           S +  +YT +I + C+ N   +                Y L +EM  +   P   T   L
Sbjct: 498 SLDESTYTFLIQRLCRANMCEW---------------AYCLFEEMISQDITPRHRTCLLL 542

Query: 475 IKLMKIQKMPDEAVRI 490
           ++ +K + M + A RI
Sbjct: 543 LEEVKKKNMHESAERI 558



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGL-LS 278
           F  A R A R       + G   +S  YN ++  L RA + E    +   EM E G+ ++
Sbjct: 374 FEEALRVATRM-----KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSIN 428

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGVDTINCLLEN-LGRSKLPKEAQLL 336
             T+   +  +    E  KA+ + + M         V T   LL +   R  + +  +LL
Sbjct: 429 TSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLL 488

Query: 337 FDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            + + KH  + + +TYT L+   CR      A  ++ EMI +   P      ++LE + K
Sbjct: 489 KEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKK 548

Query: 396 IGKRSDAIKLFEVMKA 411
                 A ++  +MK 
Sbjct: 549 KNMHESAERIEHIMKT 564


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 192/406 (47%), Gaps = 25/406 (6%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAF 289
           FF WAG +  + H + +YN ++ +L ++ + + +     +M   G + +  T+   + + 
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNL 348
             A+  ++A ++F  M        V + + L+  L R  K+ + A+LL + +     PN+
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TY  LL G C++  L EA  +++ M+ +G  PD V +N++++G  K G   +A +LFE 
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 409 MKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRR 448
           M  KG  P V +Y  ++  F                    C  N   +  L+ GF     
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           M   + L  EM   GCPPD ++YN LI+ M  +  P EA R+ +EM+RSG  P I +YN+
Sbjct: 243 MVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNI 302

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++  Y ++G  +   K++ E+ + G  PD  SY+ +I  L    + G A+   ++M+  G
Sbjct: 303 LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG 362

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
                         L R  R     EL Q M    KFE   ++  +
Sbjct: 363 SAPDAAVVIPLVIGLCRGERLTESCELFQAMV---KFECVPLIPEY 405



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 22/320 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N  TY S++S L +  + +  V +   M  +G       + + ++ F+   +  +A
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
             +FE M +      V T N LL    R       Q LF D L+    PN+ T+  LL G
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++ +++EA R++ EM   G  PDVV++N ++ G+   GK  +A +L   M   G  P+
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + SY I+I  + K                     +A  Y+ +I       ++   + + K
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  PD      L+  +   +   E+  +++ MV+    P I  YN++M    +  
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAK 416

Query: 518 NYEMGRKVWDEMIRRGCCPD 537
             +   +++ E+  RG  PD
Sbjct: 417 RSDDVCEIFHELTERGFSPD 436



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 22/295 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +   YN ++    +         + EEM EKG + ++ T+   ++ F+   E  + 
Sbjct: 152 GCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRV 211

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
            ++F+ M +      + T N LL+   +     EA  LF +++     P++ +Y  L+ G
Sbjct: 212 QSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRG 271

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      EA R+  EMI  G  PD+V++NI+++G  K G    AIKLF  +   G  P+
Sbjct: 272 MCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             SY+ +I   C+                     +AAV   L+ G     R+    +L +
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQ 391

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            M +  C P    YN L+  +   K  D+   I+ E+   GF P +    +I+++
Sbjct: 392 AMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILET 446


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 205/467 (43%), Gaps = 59/467 (12%)

Query: 193 SLDRNMEAVLDECGINLSHNLVVDVLERFRHAR---RPAFRFFCWAGDKPGFAHNSRTYN 249
           S    ++  L   G+ LS++++  VL+R R +         FF + G + GF H+S + +
Sbjct: 45  STPEQLKQSLKSSGVFLSNDVIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHSSFSLD 104

Query: 250 SMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +M+ ILGR+R F  +  +L E   K    ++  T  + +   A     ++ V  F    K
Sbjct: 105 TMLYILGRSRMFGQVWELLIEARRKDQTAITARTVMVVLGRIAKVCSVRQTVESFRKFRK 164

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367
              +   +  N LL  L + K   +A+ ++  LKHRF PNL T+ +LL GW   K   +A
Sbjct: 165 LVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHRFRPNLQTFNILLSGW---KTPEDA 221

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
              + EM + G  PDVV +N +++   K  +   A K+ + M+ +  SP+V         
Sbjct: 222 DLFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKMLDEMRDQDFSPDV--------- 272

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
                   YTC+I G G   + D   ++LKEM+E GC PD   YNA I+   I K   +A
Sbjct: 273 ------ITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDA 326

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN-------- 539
             + +EMV  G  P   TYN+  + ++ + + +    ++  M+  GC P+          
Sbjct: 327 HGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEGCLPNTQSCMFLIRL 386

Query: 540 -----------------------SYT----VLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
                                  SYT    VL   L    +  EA K   EM+EKG K  
Sbjct: 387 FRRHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCFLEMVEKGQKPS 446

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSGK-FEVSNVLARWAETT 618
            + + +    +  A R   L  L QKM   G+  +V       AET+
Sbjct: 447 HVSFRRIKVLMELANRHEALQSLMQKMAMFGRPLQVDQSTVNPAETS 493



 Score = 38.9 bits (89), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 51/258 (19%)

Query: 170 VSYKSTADP----REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR 225
           V+Y S  D     REIE+  K++DE+   D                              
Sbjct: 238 VTYNSLMDVYCKGREIEKAYKMLDEMRDQD------------------------------ 267

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKI 284
                          F+ +  TY  ++  LG   Q +   ++L+EM E G       +  
Sbjct: 268 ---------------FSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNA 312

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HR 343
           A+  F  AK    A  + E M          T N        S   + +  ++ ++    
Sbjct: 313 AIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEG 372

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             PN  +   L+  + R + +  A + W +M++KGF    +  +++ + L  +GK  +A 
Sbjct: 373 CLPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLLCDMGKLEEAE 432

Query: 404 KLFEVMKAKGPSPNVRSY 421
           K F  M  KG  P+  S+
Sbjct: 433 KCFLEMVEKGQKPSHVSF 450


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 224/486 (46%), Gaps = 76/486 (15%)

Query: 181 IERVCKVI--DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           + ++CK I  D+   L  N    L+    +L+ + VV VL     A+  A RFF WA  +
Sbjct: 154 VNKICKAIEEDQWECLQDNF---LNSMAQDLNPDAVVKVLNLQTDAQN-ALRFFQWADKQ 209

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER--- 295
            G+ HN+  Y +M+ ILGRA+ F  + S+L++M  +G    E  +  +++F  +  R   
Sbjct: 210 EGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQG---REITRSMLHSFVMSYGRSGR 266

Query: 296 -KKAVAIFELMNKYKFKAG-VDTI-NCLL------------ENLG--------------- 325
            K+++  F LM +  ++ G +DT  N +L            ENL                
Sbjct: 267 FKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTY 326

Query: 326 ---------RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
                    + K+    +LL D +++ + P++ TYT+++   C+ K + +A  V  +M +
Sbjct: 327 TSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRE 386

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC------- 429
            G +P++  +N +++GL  + +  +A++L  +M+  G  PN+ +YTI+    C       
Sbjct: 387 NGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDR 446

Query: 430 -------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                        K N   Y  L+ G+    R+    D+LKEM +  C PD +TY  LI+
Sbjct: 447 AKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQ 506

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L++  ++PD A+R++ EM   G+     T N++ +   + GN++     +  M  RG  
Sbjct: 507 GLVQGNQLPD-ALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFA 565

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
              + Y + I  L +     EA   L EM+ KG    +  YN       R GR   LD+ 
Sbjct: 566 YSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGR---LDDA 622

Query: 596 AQKMRF 601
              + F
Sbjct: 623 DAMLNF 628



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 159/355 (44%), Gaps = 28/355 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + N+ TY SM+       + E  + +L++M +      + T+ I ++A    K  ++A
Sbjct: 318 GVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQA 377

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M +   +  + T N L++ L   + P+EA  L   ++     PN+ TYT+L  G
Sbjct: 378 YGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHG 437

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+++ L  A  ++NE + +G KP+ V +N +L G  +  +  +A+ + + M     +P+
Sbjct: 438 LCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPD 497

Query: 418 VRSYTIMIWKFCKQNAA--------------------VYTCLITGF---GNRRRMDIVYD 454
             +YT +I    + N                          L  G    GN +   I Y 
Sbjct: 498 HVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFY- 556

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
             + M++RG       Y   I  +      +EA  +  EM+  G+ P + TYN ++K + 
Sbjct: 557 --RRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFC 614

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + G  +    + + MI  G  PD  SY +LI    +Q R+ +A +     LE+G+
Sbjct: 615 RQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGV 669



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 1/152 (0%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            ++L+KEM       D    + L+ L+K +K+ D A  ++ +M+ +G      TY  +++
Sbjct: 273 AFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKL-DMAENLFAQMINNGVSCNNLTYTSMIQ 331

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            +F     E   K+ D+MI+    PD  +YT++I  L  +    +AY  L++M E G + 
Sbjct: 332 CFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEP 391

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +  YN     L    R     EL   M   G
Sbjct: 392 NIYTYNALIQGLCAVRRPEEALELVTLMEQGG 423


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 189/395 (47%), Gaps = 23/395 (5%)

Query: 228 AFRFFCWAGDKPGFAHNS-RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIA 285
           +  FF WA  +  + H S   YN M+ + G+ RQF+    +++ M  + + +S+ETF I 
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
           +  +  A    +AV  F  M  Y         + ++ NL R +   EAQ  FD LK RF 
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE 252

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++  YT L+ GWCR   + EA +V+ EM   G +P+V  ++I+++ L + G+ S A  +
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDV 312

Query: 406 FEVMKAKGPSPN--------------------VRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           F  M   G +PN                    ++ Y  M    C+ +   Y  LI     
Sbjct: 313 FADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCR 372

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              ++    +L  M ++ C  +  T+N + + ++ ++  + A R+Y +M+ +  +P   T
Sbjct: 373 DENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVT 432

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN++M+ +  + + +M  K+  EM  +   P+ N+Y +L+           AYK  +EM+
Sbjct: 433 YNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMV 492

Query: 566 EKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
           E+    P L  Y    A L RAG+    +EL +KM
Sbjct: 493 EEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 106/233 (45%), Gaps = 31/233 (13%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           +NEMID             L G  K+ +   A  L ++MK++    ++ ++TI+I ++ +
Sbjct: 154 YNEMID-------------LSG--KVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVR 198

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
             A + +  +  F NR            ME+ GC PD + ++ +I  +  ++   EA   
Sbjct: 199 --AGLASEAVHCF-NR------------MEDYGCVPDKIAFSIVISNLSRKRRASEAQSF 243

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           +  + +  F+P +  Y  +++ + + G      KV+ EM   G  P+  +Y+++I  L  
Sbjct: 244 FDSL-KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCR 302

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +   A+    +ML+ G     + +N       +AGR+  + ++  +M+  G
Sbjct: 303 CGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLG 355


>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g43820
 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 546

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 242/523 (46%), Gaps = 37/523 (7%)

Query: 105 LHSLQKVLLNKSTNVVASSLTNHNLAT-------NILDSNCVNYRNVSSVTDDNQDSDGE 157
           + SL++V  +   N++++SL N  L T        ++D + V     S +   +  +   
Sbjct: 9   IESLRRVHSSDLENLISASLYNRTLCTASESLNHGVVDESYVLAELSSLLPISSNKTSVS 68

Query: 158 CDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDV 217
            + ++S++++   S+ S  D     ++  V  +       ++  L   GI LS ++V DV
Sbjct: 69  KEDSSSKNQVAIDSFLSAED-----KLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADV 123

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL- 276
           L R   +      FF WA  +PG   +  +Y+ ++  LGR + F  M+ +L+ M  +G+ 
Sbjct: 124 LNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVN 183

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             +E   IAM++F      ++A+ +FE    +  K   ++ N LL  L        A+ +
Sbjct: 184 PDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSV 243

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           F+  K     +  +Y +++ GW ++  + E  +V  EM++ GF PD ++++ ++EGL + 
Sbjct: 244 FNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRT 303

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVY 436
           G+ +D++++F+ +K KG  P+   Y  MI  F                    C+ N   Y
Sbjct: 304 GRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETY 363

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           + L++G    R++    ++ +EM  RG  P      + +K +     P  A+ IY++  +
Sbjct: 364 SKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRK 423

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
           +G + +   Y +++K   + G   M   VWDEM   G   D   Y  ++ GL        
Sbjct: 424 AGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLEN 483

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           A   +EE + KG       Y++ ++ L  + ++    ELA K+
Sbjct: 484 AVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKT----ELAYKL 522



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 158/349 (45%), Gaps = 28/349 (8%)

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT------INCLLENLGRSKLPKEAQLL 336
           ++A+++F +A+++ + V + +L  K   +  + +      I+ + + L R  L  EA + 
Sbjct: 77  QVAIDSFLSAEDKLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVT 136

Query: 337 FDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           F     R    T ++ +Y+V+L    R K       V   M+ +G  PD+    I ++  
Sbjct: 137 FFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSF 196

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAA 434
           +++     AI+LFE  ++ G   +  S+  ++   C++                   ++ 
Sbjct: 197 VRVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSC 256

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  +I+G+     ++ +  +LKEM E G  PD L+Y+ LI+ +      +++V I+  +
Sbjct: 257 SYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNI 316

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G  P  + YN ++ ++    +++   + +  M+   C P+  +Y+ L+ GLI   + 
Sbjct: 317 KHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKV 376

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +A +  EEML +G+         F   L   G  +    + QK R +G
Sbjct: 377 SDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAG 425



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 154/337 (45%), Gaps = 27/337 (8%)

Query: 213 LVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           + +D   R  + RR A   F    +  G   ++ ++N+++  L          S+     
Sbjct: 191 IAMDSFVRVHYVRR-AIELF-EESESFGVKCSTESFNALLRCLCERSHVSAAKSVFN--A 246

Query: 273 EKGLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
           +KG +  ++  + I ++ ++   E ++   + + M +  F     + + L+E LGR+   
Sbjct: 247 KKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRI 306

Query: 331 KEAQLLFDKLKHRF-TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++  +FD +KH+   P+   Y  ++  +   ++  E+ R +  M+D+  +P++  ++ +
Sbjct: 307 NDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKL 366

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPN---VRSY------------TIMIWK-----FC 429
           + GL+K  K SDA+++FE M ++G  P    V S+             ++I++      C
Sbjct: 367 VSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGC 426

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           + + + Y  L+       +  ++ ++  EM+E G P D   Y  ++  + I    + AV 
Sbjct: 427 RISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVL 486

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +E +R GF P    Y+ +      +   E+  K++
Sbjct: 487 VMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLF 523



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD----GLTYNALIKLMKIQKMPDE 486
           ++   Y+ ++   G R+    + D+LK M   G  PD     +  ++ +++  +++    
Sbjct: 149 KDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRR---- 204

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN-SYTVLI 545
           A+ +++E    G K +  ++N +++   +  +    + V++   ++G  P D+ SY ++I
Sbjct: 205 AIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNA--KKGNIPFDSCSYNIMI 262

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            G        E  K L+EM+E G     L Y+     L R GR     E+   ++  G  
Sbjct: 263 SGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNV 322

Query: 606 EVSNV 610
             +NV
Sbjct: 323 PDANV 327



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA-MNAFAAAKERKKAVAIF 302
           N  TY+ ++S L + R+    + + EEM  +G+L       + +    +      A+ I+
Sbjct: 359 NLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIY 418

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL--FDKLKHRFTP-NLTTYTVLLGGWC 359
           +   K   +        LL+ L  S+  K   LL  +D+++    P ++  Y  ++ G C
Sbjct: 419 QKSRKAGCRISESAYKLLLKRL--SRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLC 476

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            + +L  A  V  E + KGF P+   ++ +   L+   K   A KLF  +K    + N R
Sbjct: 477 IIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLFLKIKKARATENAR 536

Query: 420 SY 421
           S+
Sbjct: 537 SF 538


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 196/457 (42%), Gaps = 55/457 (12%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
            L   +V  VL+R +  +  A  FF WAGD+ GF H++ T N  +  L      + + +M
Sbjct: 90  TLQPAVVSRVLQRLKDPQT-AIVFFVWAGDR-GFKHSTFTRNCFLQTLLENGSSDRIPAM 147

Query: 268 LEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-- 324
            E M + G      T+ + + +     +  KA  + +      FK  V     L      
Sbjct: 148 FERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCK 207

Query: 325 -GRSK--------LPKEAQLLFDKLKH---------------------RFTPNLTTYTVL 354
            GR K        +P    + ++ + H                     +  P++ TY +L
Sbjct: 208 TGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNIL 267

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+     +A  + +EM+D+G  PD V  N +++GL K GK   A  L  VM  +  
Sbjct: 268 IDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 327

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+  +Y  +I   CKQ                    +   Y+ L  G   R R+D  ++
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFE 387

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L+KEM  +GC P+ +TYN LI  +      ++A  + + +V SGF P + TY +I+    
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLC 447

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +   K+ + M++RGC P   +YT L+ GL    R  EA+   +EM+ K   A  L
Sbjct: 448 KEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADAL 507

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
            Y        ++ R+    ++   +R +   +V N L
Sbjct: 508 AYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNAL 544



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 180/376 (47%), Gaps = 19/376 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++S L + +  +    +++E    G +  + T+ I  +         +A  + + M
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM 392

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           +       + T N L++ L + SK  K  +LL   +   F P++ TYT+++ G C+   L
Sbjct: 393 SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRL 452

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A ++   M+ +G  P V+ +  ++EGL + G+  +A  +F+ M +K  + +  +Y  +
Sbjct: 453 DKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSL 512

Query: 425 IWKFCKQNAA-----------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
           +  +CK +                   VY  L+ G+    R+D + ++ ++M  RGC P+
Sbjct: 513 VNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN 572

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
             TYN ++  +      DEA    + M  +G  P + +YN+I+   F+    +  R+V D
Sbjct: 573 IKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLD 632

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +MI+ G  PD  +Y  L+     ++R  +A   L+ M++ G+    + YN   + LS+  
Sbjct: 633 QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTN 692

Query: 588 RSYVLDELAQKMRFSG 603
           R     EL  +M  +G
Sbjct: 693 RLGDAYELMHEMLRNG 708



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 50/383 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  +  TY+ +   L +  + +    +++EM  KG   ++ T+   ++    A + +KA
Sbjct: 361 GFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKA 420

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + E +    F   V T   +++ L +  +L K  +++   LK   TP++ TYT L+ G
Sbjct: 421 YELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEG 480

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAH------------------------------- 386
            CR   + EA  ++ EM+ K    D +A+                               
Sbjct: 481 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDV 540

Query: 387 -NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
            N +++G  K G+  +   +FE M  +G  PN+++Y I++   CK               
Sbjct: 541 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHG------------- 587

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             ++D  +  L+ M   GC PD ++YN +I  +     P EA ++  +M+++G  P   T
Sbjct: 588 --KVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 645

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN +M  + +   ++    +   MI+ G  PD+ +Y  LI GL   +R G+AY+ + EML
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 566 EKG-MKAPVLDYNKFAADLSRAG 587
             G + +    YN     L + G
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEG 728



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 159/374 (42%), Gaps = 56/374 (14%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN++M    +  + + + ++ E+M  +G + +++T+ I M+      +  +A    E M
Sbjct: 540 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 599

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
           +       V + N +++ L ++  PKEA+ + D++ +    P+  TY  L+  +C+ +  
Sbjct: 600 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 659

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---------------------- 402
            +A  +   MI  G  PD V +N ++ GL +  +  DA                      
Sbjct: 660 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNT 719

Query: 403 --------------IKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
                         + L + M   G   N  +Y I I + CK+                 
Sbjct: 720 IIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR 779

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           +   YT +I G     ++D    L +EM   +G      T+N LI      K  DEA+ +
Sbjct: 780 DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTL 839

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
              MV+ G  P++ TYNM++    +    +   +++DEM  RG      SYTVLI GL  
Sbjct: 840 LGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCG 899

Query: 551 QDRSGEAYKYLEEM 564
           Q R  EA + LEEM
Sbjct: 900 QGRGKEALQVLEEM 913



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 25/257 (9%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKER 295
           K G   ++ TYN+++S L +  +      ++ EM   G +  +  T+   ++        
Sbjct: 671 KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCL 730

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           K+A+ + + M  +  +A   T N  ++ L +     EA  L  ++      +  +YT ++
Sbjct: 731 KQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT--LRDEVSYTTVI 788

Query: 356 GGWCRVKNLMEAGRVWNEMID-KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
            G C+ + L  A ++  EM+  KG        N++++   K  +  +A+ L  +M  +G 
Sbjct: 789 IGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGC 848

Query: 415 SPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYD 454
           SP+V +Y ++I   CK                     ++  YT LI G   + R      
Sbjct: 849 SPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQ 908

Query: 455 LLKEMEERGCPPDGLTY 471
           +L+EM    C  D L +
Sbjct: 909 VLEEMASSDCEIDDLKW 925


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 192/406 (47%), Gaps = 25/406 (6%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAF 289
           FF WAG +  + H + +YN ++ +L ++ + + +     +M G   + +  T+   + + 
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSL 62

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNL 348
             A+  ++A ++F  M        V + + L+  L R  K+ + A+LL + +     PN+
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TY  LL G C++  L EA  +++ M+ +G  PD V +N++++G  K G   +A +LFE 
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 409 MKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRR 448
           M  KG  P V +Y  ++  F                    C  N   +  L+ GF     
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           M   + L  EM   GCPPD ++YN L++ M  +  P EA R+ +EM+RSG  P I +YN+
Sbjct: 243 MVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNI 302

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++  Y ++G  +   K++ E+ + G  PD  SY+ +I  L    + G A+   ++M+  G
Sbjct: 303 LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG 362

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
                         L R  R     EL Q M    KFE   ++  +
Sbjct: 363 SAPDAAVVIPLVIGLCRGERLTESCELFQAMV---KFECVPLIPEY 405



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 22/320 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N  TY S++S L +  + +  V +   M  +G       + + ++ F+   +  +A
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
             +FE M +      V T N LL    R       Q LF D L+    PN+ T+  LL G
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++ +++EA R++ EM   G  PDVV++N ++ G+   GK  +A +L   M   G  P+
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + SY I+I  + K                     +A  Y+ +I       ++   + + K
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  PD      L+  +   +   E+  +++ MV+    P I  YN++M    +  
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAK 416

Query: 518 NYEMGRKVWDEMIRRGCCPD 537
             +   +++ E+  RG  PD
Sbjct: 417 RSDDVCEIFHELTERGFSPD 436



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 22/295 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +   YN ++    +         + EEM EKG + ++ T+   ++ F+   E  + 
Sbjct: 152 GCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRV 211

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
            ++F+ M +      + T N LL+   +     EA  LF +++     P++ +Y  L+ G
Sbjct: 212 QSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRG 271

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      EA R+  EMI  G  PD+V++NI+++G  K G    AIKLF  +   G  P+
Sbjct: 272 MCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             SY+ +I   C+                     +AAV   L+ G     R+    +L +
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQ 391

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            M +  C P    YN L+  +   K  D+   I+ E+   GF P +    +I+++
Sbjct: 392 AMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILET 446


>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 21/393 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L   GI+L+ ++V +V+ R          FF WA  +P    +  TYN ++  LGR
Sbjct: 78  IELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKALGR 137

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            +  E +V +L++M  +G+  + ET  I M++F  A++  KA+ +F  + ++  K   ++
Sbjct: 138 RKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTES 197

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +N LL+ L +      A L F+ +K     N  TY +++GGW +   + E  R    M+ 
Sbjct: 198 LNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVA 257

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------- 428
            GF P+ +  + ++EGL + G+  DA+++F  M+  G  PN   Y  +I  F        
Sbjct: 258 DGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDE 317

Query: 429 ------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  N   YT LI  F   R++    ++L EM  RG  P      + I+
Sbjct: 318 CLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIE 377

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +     P  A+ IYK+  + G + ++  Y +++    + G   M   +WDEM   G   
Sbjct: 378 PLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSS 437

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           D   Y  +I GL +  +   A   +EE L KG 
Sbjct: 438 DTEVYEYVINGLCNIGQLDTAVLVMEESLHKGF 470



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 33/345 (9%)

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFK-----AGVD-TINCLLENLGRSKLPKEAQLLFD 338
           A++ F +  E+ + V I  L  K   +      G+D TI+ + E + R  L  EA ++F 
Sbjct: 53  AVDGFLSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFF 112

Query: 339 K--LKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
              +K    P ++ TY V++    R K +    +V  +M  +G  P+    +I+++  +K
Sbjct: 113 NWAVKQPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIK 172

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
             + S AI++F  ++  G   +  S  +++   C+++         G  N     + ++ 
Sbjct: 173 ARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSH-------VGAAN-----LFFNA 220

Query: 456 LKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           +K     G P + +TYN +I    K  KI +M     R  K MV  GF P   T++ +++
Sbjct: 221 MKG----GIPFNCMTYNIIIGGWSKYGKIGEME----RCLKAMVADGFSPNCLTFSHLIE 272

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              + G  +   +V+  M   GC P+   Y  LI   IS     E  KY   M+      
Sbjct: 273 GLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDP 332

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
            +  Y K      +A +     E+  +M   G    +  +  + E
Sbjct: 333 NMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIE 377



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY  ++    +AR+    + ML+EM  +G++ +       +           A+ I+
Sbjct: 333 NMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIY 392

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           +   K   +  +     LL  L R         L+D+++   ++ +   Y  ++ G C +
Sbjct: 393 KKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNI 452

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  V  E + KGF P  +  + +   LL   K   A KLF  +K    + N R +
Sbjct: 453 GQLDTAVLVMEESLHKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKIARQNDNARRF 512


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 36/387 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK--IAMNAFAAAKERKK 297
           G   ++  YN++++ L +  Q E +  +LEEM E G    +TF     +     + + ++
Sbjct: 192 GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGR-EPDTFSYNTVVACLCESGKYEE 250

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A  I E M + K    V T N L++   + SK+ +  +LL D +  R  P + TYT L+G
Sbjct: 251 AGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIG 310

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ R   L +A RV  +M   G  PD+V +N +L+GL K GK  +A +L EVM  K  +P
Sbjct: 311 GFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAP 370

Query: 417 NVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
           +V +Y+I++   CK                     N   +  +I GF    ++D  + +L
Sbjct: 371 DVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVL 430

Query: 457 KEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           + M+E  C PD +TY+ LI    K  +M D    +       G  P   +Y+ +++    
Sbjct: 431 ELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL-------GISPDKASYSSMLEGLCS 483

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           TG  E  ++V D M ++GC P  + Y ++IGGL   +R  EA K L+ M E+G +  +  
Sbjct: 484 TGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYT 543

Query: 576 YNKFAADLSRAGRSY----VLDELAQK 598
           Y+     L +  R      VLD + +K
Sbjct: 544 YSILINGLCKTKRVEDAINVLDVMLEK 570



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 186/373 (49%), Gaps = 16/373 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS+M    +  + +    +LE+M G +   ++ T+   +  F+ A     A  + E M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328

Query: 306 NKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            K      + T NCLL+ L ++ KL +  +LL   ++    P++ TY++L+ G C++  +
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  +   M+++G +P++V  N M++G  K GK  +  K+ E+MK    +P+V +Y+ +
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL 448

Query: 425 IWKFCKQN--------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
           I  +CK N               A Y+ ++ G  +  +++   +++  M ++GCPP    
Sbjct: 449 IDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSH 508

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  +I  +   +  DEA+++ + M   G +P ++TY++++    +T   E    V D M+
Sbjct: 509 YALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVML 568

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
            +GC PD  +YT LI G    ++   AY+  + M + G +   L YN   +   ++G   
Sbjct: 569 EKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVE 628

Query: 591 VLDELAQKMRFSG 603
              E+ Q M   G
Sbjct: 629 KAIEVMQLMLEKG 641



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 160/342 (46%), Gaps = 21/342 (6%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           S  T+   +  F+ A   K  + I   M   +F   V T N +L+   +      A   F
Sbjct: 23  SNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHF 82

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
            + K   +P   TY +L+ G C+ + + EA ++ +EMI K   PD   +N ++ GL K+G
Sbjct: 83  -RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMG 141

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA--------------------AVYT 437
           K   A  + ++M  +   P+V +YT +I   C+ NA                      Y 
Sbjct: 142 KIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYN 201

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+ G   + +++ V  LL+EM E G  PD  +YN ++  +      +EA +I ++M+  
Sbjct: 202 ALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEK 261

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
              P + TYN +M  + +    +   ++ ++M+ R C P   +YT LIGG    DR  +A
Sbjct: 262 KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADA 321

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           Y+ +E+M + G+   ++ YN     L +AG+     EL + M
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVM 363



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 159/337 (47%), Gaps = 30/337 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G + +  TYN ++  L +A + E    +LE M EK     + T+ I +N      +  
Sbjct: 330 KAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVD 389

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
            A  + E+M +   +  + T N +++   ++    E   + + +K    TP++ TY+ L+
Sbjct: 390 DARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLI 449

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+   + +A  +       G  PD  +++ MLEGL   GK  +A ++ ++M  +G  
Sbjct: 450 DGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCP 503

Query: 416 PNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           P    Y ++I   C                    + N   Y+ LI G    +R++   ++
Sbjct: 504 PTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 456 LKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  M E+GC PD  TY +LI    KI KM D A + +K M  SG +P    YN+++  + 
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKM-DAAYQCFKTMRDSGCEPDKLAYNILISGFC 622

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           Q+GN E   +V   M+ +GC PD  +Y  L+  L ++
Sbjct: 623 QSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 125/265 (47%), Gaps = 23/265 (8%)

Query: 340 LKHRFT----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            + RF+    P+ +TY  L+ G+ R  N      + NEM+ + F PDV+ HN +L+   +
Sbjct: 12  FRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQ 71

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           IG    A+  F   + K            +W  C   A  Y  LI G    +R+D  Y L
Sbjct: 72  IGDLDRALSHF---RGK------------MW--CSPTAFTYCILIHGLCQCQRIDEAYQL 114

Query: 456 LKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L EM ++ C PD   YN LI  L K+ K+ D A  + K M+     P + TY  ++    
Sbjct: 115 LDEMIQKDCHPDAAVYNCLIAGLCKMGKI-DAARNVLKMMLERSCVPDVITYTSLIVGCC 173

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           QT   +  RK+ ++M   G  PD  +Y  L+ GL  Q++  E  K LEEM+E G +    
Sbjct: 174 QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233

Query: 575 DYNKFAADLSRAGRSYVLDELAQKM 599
            YN   A L  +G+     ++ +KM
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKM 258



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 31/264 (11%)

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +E    + E      KP    +  ++ G  + G     +++   M A+  SP+V ++  +
Sbjct: 6   LEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTI 65

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE-RG---CPPDGLTYNALIK-LMK 479
           +  +C+                     + DL + +   RG   C P   TY  LI  L +
Sbjct: 66  LKAYCQ---------------------IGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQ 104

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
            Q++ DEA ++  EM++    P    YN ++    + G  +  R V   M+ R C PD  
Sbjct: 105 CQRI-DEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVI 163

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDEL 595
           +YT LI G    +   EA K +E+M E G+    + YN     L +  +    S +L+E+
Sbjct: 164 TYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEM 223

Query: 596 AQKMRFSGKFEVSNVLARWAETTK 619
            +  R    F  + V+A   E+ K
Sbjct: 224 VEAGREPDTFSYNTVVACLCESGK 247


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 185/388 (47%), Gaps = 22/388 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N  T N M++ L + ++ E   S L +M EKG+   + T+   +NA+      +
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  + + M+    K  V T N ++  L ++ K  +   +L + LK   +P+  TY +LL
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 366

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR  N+M+A R+++EM  +G  PD+V+ + ++  L K G    A+K F  MK  G +
Sbjct: 367 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 426

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+   YTI+I  FC+                     +   Y  ++ G    + +    +L
Sbjct: 427 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 486

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM ERG  PD  T+  LI         ++AV +++ M++   KP + TYN ++  + +
Sbjct: 487 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 546

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               E   ++W++MI R   P+  SY +LI G  +     EA++  +EM+EKG +A ++ 
Sbjct: 547 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT 606

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
            N       RAG +   DE    M   G
Sbjct: 607 CNTIVKGYCRAGNAVKADEFLSNMLLKG 634



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 141/294 (47%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ L + +       +  EM E+G+     TF   +N ++      KAV +FE+M
Sbjct: 466 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 525

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   K  V T N L++   + S++ K  +L  D +  R  PN  +Y +L+ G+C +  +
Sbjct: 526 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 585

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA R+W+EM++KGF+  ++  N +++G  + G    A +    M  KG  P+       
Sbjct: 586 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD------- 638

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  LI GF     MD  + L+ +ME  G  PD +TYN ++     Q   
Sbjct: 639 --------GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRM 690

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA  I  +M+  G  P   TY  ++  +    N +   +V DEM++RG  PDD
Sbjct: 691 QEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 744



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 173/409 (42%), Gaps = 57/409 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   +  TYN++++   R    E    +++ M  KGL   + T+   +N      + 
Sbjct: 281 EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 340

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------------ 343
            +A  + + M K        T N LL    R+    +A+ +FD++  +            
Sbjct: 341 LRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 400

Query: 344 ------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
                                     P+   YT+L+GG+CR   + EA +V +EM+++G 
Sbjct: 401 IGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 460

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT----------------- 422
             DVV +N +L GL K    S+A +LF  M  +G  P+  ++T                 
Sbjct: 461 VLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVT 520

Query: 423 ---IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
              +MI +  K +   Y  LI GF     M+ V +L  +M  R   P+ ++Y  LI    
Sbjct: 521 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 580

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA R++ EMV  GF+ TI T N I+K Y + GN     +    M+ +G  PD  
Sbjct: 581 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI 640

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +Y  LI G I ++    A+  + +M   G+   V+ YN      SR GR
Sbjct: 641 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGR 689



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 158/331 (47%), Gaps = 17/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G A ++  Y  ++    R       + + +EM E+G +L + T+   +N     K   +A
Sbjct: 424 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEA 483

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M +        T   L+    +     +A  LF+ +  R   P++ TY  L+ G
Sbjct: 484 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 543

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + +   +WN+MI +   P+ +++ I++ G   +G  S+A +L++ M  KG    
Sbjct: 544 FCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 603

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +   ++  +C+             GN  + D   + L  M  +G  PDG+TYN LI  
Sbjct: 604 IITCNTIVKGYCRA------------GNAVKAD---EFLSNMLLKGIVPDGITYNTLING 648

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              ++  D A  +  +M  SG  P + TYN+I+  + + G  +    +  +MI RG  PD
Sbjct: 649 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 708

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            ++YT LI G ++Q+   EA++  +EML++G
Sbjct: 709 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 739



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 167/387 (43%), Gaps = 36/387 (9%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSME----------------- 280
           P F H+ +++++M+ IL R+R+     +++  M  K G+  +E                 
Sbjct: 126 PNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPL 185

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            F + +  +  A++ ++    F ++        ++  N LL  L +      A  ++ ++
Sbjct: 186 VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 245

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            +     N+ T  +++   C+ + +       ++M +KG  PDVV +N ++    + G  
Sbjct: 246 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 305

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A +L + M  KG  P V +Y  +I   CK             G   R   V D   EM
Sbjct: 306 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKT------------GKYLRAKGVLD---EM 350

Query: 460 EERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
            + G  PD  TYN L ++  +   M D A RI+ EM   G  P + +++ ++    + G 
Sbjct: 351 LKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGLLSKNGC 409

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   K + +M   G  PD+  YT+LIGG        EA K  +EMLE+G    V+ YN 
Sbjct: 410 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNT 469

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKF 605
               L +       DEL  +M   G F
Sbjct: 470 ILNGLCKEKMLSEADELFTEMTERGVF 496


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 195/389 (50%), Gaps = 29/389 (7%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +NLS  LV  +L RFR   + A     WA    G  H++  Y+  + ILG+A++++ +  
Sbjct: 81  VNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYDMAVDILGKAKKWDRLKV 140

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            +E M    L+++ T    M  FA A E ++AV IF+ + ++  +   +++N LL+ L +
Sbjct: 141 FVERMRGDKLVTLNTIAKIMRRFAGAGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCK 200

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K  ++A+++  +LK   TPN  T+ + + GWC+   + EA     EM   GF+P V+++
Sbjct: 201 EKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 260

Query: 387 NIMLEGLLKIGKRSDAIKLFEV---MKAKGPSPNVRSYTIMIWKF--------------- 428
             ++       ++S+ +K++E+   M+A G  PN  +YT ++                  
Sbjct: 261 TTIIRCYC---QQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 317

Query: 429 -----CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQK 482
                C+ ++  Y CLI       R++    + + EM E G   +  TYN++I +     
Sbjct: 318 MKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHD 377

Query: 483 MPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNS 540
             D+A+ + KEM  S    P +HTY  +++S F+ G+  E+G+ + + + +     D+++
Sbjct: 378 EEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDEST 437

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           YT LI  L   +    AY   EEM+ + +
Sbjct: 438 YTFLIQRLCRANICEWAYCLFEEMISQDI 466



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 16/192 (8%)

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G+  +A+ +F+ +   G   N  S  +++   CK+               +R++    +L
Sbjct: 167 GEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCKE---------------KRVEQARVVL 211

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            E++     P+  T+N  I         +EA+   +EM   GF+P + +Y  I++ Y Q 
Sbjct: 212 LELKSH-ITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQ 270

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             +    ++  EM   G  P+  +YT ++  L +Q    EA +    M   G +   L Y
Sbjct: 271 SEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFY 330

Query: 577 NKFAADLSRAGR 588
           N     L+R+GR
Sbjct: 331 NCLIHTLARSGR 342



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 20/256 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF     +Y +++    +  +F  +  ML EM   G      T+   M++  A KE ++A
Sbjct: 252 GFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEA 311

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLG 356
           + +   M +   +      NCL+  L RS   +EA+ +F  +  +   + N +TY  ++ 
Sbjct: 312 LRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIA 371

Query: 357 GWCRVKNLMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP- 414
            +C      +A  +  EM       PDV  +  +L    K G   +  KL + M  K   
Sbjct: 372 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 431

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           S +  +YT +I + C+ N   +                Y L +EM  +   P   T   L
Sbjct: 432 SLDESTYTFLIQRLCRANICEWA---------------YCLFEEMISQDITPRHRTCLLL 476

Query: 475 IKLMKIQKMPDEAVRI 490
           ++ +K + M + A RI
Sbjct: 477 LEEVKKKNMHESAERI 492



 Score = 38.9 bits (89), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGL-LS 278
           F  A R A R       + G   +S  YN ++  L R+ + E    +   EM E G+ ++
Sbjct: 308 FEEALRVATRM-----KRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSIN 362

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGVDTINCLLEN-LGRSKLPKEAQLL 336
             T+   +  +    E  KA+ + + M         V T   LL +   R  + +  +LL
Sbjct: 363 TSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLL 422

Query: 337 FDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            + + KH  + + +TYT L+   CR      A  ++ EMI +   P      ++LE + K
Sbjct: 423 KEMVTKHHLSLDESTYTFLIQRLCRANICEWAYCLFEEMISQDITPRHRTCLLLLEEVKK 482

Query: 396 IGKRSDAIKLFEVMKA 411
                 A ++  +MK 
Sbjct: 483 KNMHESAERIEHIMKT 498


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 185/388 (47%), Gaps = 22/388 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N  T N M++ L + ++ E   S L +M EKG+   + T+   +NA+      +
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  + + M+    K  V T N ++  L ++ K  +   +L + LK   +P+  TY +LL
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 470

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR  N+M+A R+++EM  +G  PD+V+ + ++  L K G    A+K F  MK  G +
Sbjct: 471 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 530

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+   YTI+I  FC+                     +   Y  ++ G    + +    +L
Sbjct: 531 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADEL 590

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM ERG  PD  T+  LI         ++AV +++ M++   KP + TYN ++  + +
Sbjct: 591 FTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 650

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               E   ++W++MI R   P+  SY +LI G  +     EA++  +EM+EKG +A ++ 
Sbjct: 651 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT 710

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
            N       RAG +   DE    M   G
Sbjct: 711 CNTIVKGYCRAGNAVKADEFLSNMLLKG 738



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 140/294 (47%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ L + +       +  EM E+G+     TF   +N +       KAV +FE+M
Sbjct: 570 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMM 629

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   K  V T N L++   + S++ K  +L  D +  R  PN  +Y +L+ G+C +  +
Sbjct: 630 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 689

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA R+W+EM++KGF+  ++  N +++G  + G    A +    M  KG  P+       
Sbjct: 690 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD------- 742

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  LI GF     MD  + L+ +ME  G  PD +TYN ++     Q   
Sbjct: 743 --------GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRM 794

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA  I  +M+  G  P   TY  ++  +    N +   +V DEM++RG  PDD
Sbjct: 795 QEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 848



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 177/420 (42%), Gaps = 57/420 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   +  TYN++++   R    E    +++ M  KGL   + T+   +N      + 
Sbjct: 385 EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 444

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------------ 343
            +A  + + M K        T N LL    R+    +A+ +FD++  +            
Sbjct: 445 LRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 504

Query: 344 ------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
                                     P+   YT+L+GG+CR   + EA +V +EM+++G 
Sbjct: 505 IGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 564

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT----------------- 422
             DVV +N +L GL K    S+A +LF  M  +G  P+  ++T                 
Sbjct: 565 XLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVT 624

Query: 423 ---IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
              +MI +  K +   Y  LI GF     M+ V +L  +M  R   P+ ++Y  LI    
Sbjct: 625 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 684

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA R++ EMV  GF+ TI T N I+K Y + GN     +    M+ +G  PD  
Sbjct: 685 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI 744

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y  LI G I ++    A+  + +M   G+   V+ YN      SR GR    + +  KM
Sbjct: 745 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKM 804



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 168/355 (47%), Gaps = 28/355 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   +  ++++++ +L +    +  +    +M   GL      + I +  F       +A
Sbjct: 493 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 552

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + + M +      V T N +L  L + K+  EA  LF ++  R   P+  T+T L+ G
Sbjct: 553 LKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 612

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  N+ +A  ++  MI +  KPDVV +N +++G  K  +     +L+  M ++   PN
Sbjct: 613 YXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 672

Query: 418 VRSYTIMIWKFCKQN------------------AAVYTC--LITGF---GNRRRMDIVYD 454
             SY I+I  +C                     A + TC  ++ G+   GN  + D   +
Sbjct: 673 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD---E 729

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
            L  M  +G  PDG+TYN LI     ++  D A  +  +M  SG  P + TYN+I+  + 
Sbjct: 730 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + G  +    +  +MI RG  PD ++YT LI G ++Q+   EA++  +EML++G 
Sbjct: 790 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 844



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 167/387 (43%), Gaps = 36/387 (9%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSME----------------- 280
           P F H+ +++++M+ IL R+R+     +++  M  K G+  +E                 
Sbjct: 230 PNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPL 289

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            F + +  +  A++ ++    F ++        ++  N LL  L +      A  ++ ++
Sbjct: 290 VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 349

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            +     N+ T  +++   C+ + +       ++M +KG  PDVV +N ++    + G  
Sbjct: 350 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 409

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A +L + M  KG  P V +Y  +I   CK             G   R   V D   EM
Sbjct: 410 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKT------------GKYLRAKGVLD---EM 454

Query: 460 EERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
            + G  PD  TYN L ++  +   M D A RI+ EM   G  P + +++ ++    + G 
Sbjct: 455 LKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGLLSKNGC 513

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   K + +M   G  PD+  YT+LIGG        EA K  +EMLE+G    V+ YN 
Sbjct: 514 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNT 573

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKF 605
               L +       DEL  +M   G F
Sbjct: 574 ILNGLCKEKMLSEADELFTEMTERGVF 600


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 199/407 (48%), Gaps = 21/407 (5%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           L E G  L  ++V  VL++     + A +FF W   +PG+ H+  T N ++S   R ++ 
Sbjct: 90  LCEFGGYLVPSVVGRVLQQLDDLDK-AVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKA 148

Query: 262 ETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
           +    + +     GL S +  T+   +N F  A++ ++A  + + M K          N 
Sbjct: 149 QEAYDLFKNH-RCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNT 207

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +++ L  +     A + +  ++    P++ TYT+L+   C+   + +A  +  +MI+ G 
Sbjct: 208 IIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGC 267

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
            P+VV +N ++ G  K+G   +A+ LF  M     SP+V +Y I+I  +CKQ        
Sbjct: 268 APNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQ-------- 319

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSG 498
                  R  D    LL+EM + GC P+ +TYN L+  L+K  K  D A  + + M+R  
Sbjct: 320 ------ERPQDGA-KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID-AFNLAQMMLRRD 371

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            KP+  T+N+++  + + G  ++  +++  M  RGC PD  +Y ++I G    +R  +A 
Sbjct: 372 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 431

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           + LE M E G    V+ YN   + L +A +     E+ + +R  G F
Sbjct: 432 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYF 478



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 185/364 (50%), Gaps = 21/364 (5%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           + + NL++D+  +       A+  F    D+ G   +  TYN M+S   RA + +    +
Sbjct: 376 HFTFNLMIDMFCKVGQLDL-AYELFQLMTDR-GCLPDIYTYNIMISGACRANRIDDARQL 433

Query: 268 LEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           LE M E G    + T+   ++    A +  +A  ++E++    +   V T + L++ L +
Sbjct: 434 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 493

Query: 327 SKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           S+   +A+ L  +++   + P++  YT+L+ G+C+   L ++   ++EM+DKG  P V+ 
Sbjct: 494 SRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVIT 553

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           ++I+++ L K  +  D   L + M  +G +P+               A VYT +I G   
Sbjct: 554 YSIVIDKLCKSARVRDGCMLLKTMLERGVTPD---------------AIVYTSVIDGLCK 598

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
               D  Y+L K M++ GC P  +TYN L+ KL K+ ++ DEA+ + + M   G  P   
Sbjct: 599 SDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRL-DEAIHLLEVMESDGCLPDTV 657

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN +   ++++  ++   +++  M  RGC P    Y++L+  L+++++  +A +  EE 
Sbjct: 658 TYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEA 717

Query: 565 LEKG 568
           LE G
Sbjct: 718 LEAG 721



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 168/377 (44%), Gaps = 25/377 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A N  TYN++++   +    +  V +  +M E      + T+ I ++ +   +  +  
Sbjct: 266 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDG 325

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M KY  +    T N L+++L +S K      L    L+    P+  T+ +++  
Sbjct: 326 AKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDM 385

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+V  L  A  ++  M D+G  PD+  +NIM+ G  +  +  DA +L E M   G  P+
Sbjct: 386 FCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPD 445

Query: 418 VRSYTIMIWKFCKQNAA------------------VYTC--LITGFGNRRRMDIVYDLLK 457
           V +Y  ++   CK +                    V TC  LI G    RR+D    LL+
Sbjct: 446 VVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLR 505

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EME  G  PD + Y  LI         D+++  + EM+  G  PT+ TY++++    ++ 
Sbjct: 506 EMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSA 565

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
               G  +   M+ RG  PD   YT +I GL   D   EAY+  + M + G    V+ YN
Sbjct: 566 RVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYN 625

Query: 578 KFAADLSRAGRSYVLDE 594
                L +  R   LDE
Sbjct: 626 VLVDKLCKVSR---LDE 639



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 158/343 (46%), Gaps = 19/343 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   N  TYN++M  L ++ ++    ++ + M  +    S  TF + ++ F    +  
Sbjct: 334 KYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLD 393

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +F+LM        + T N ++    R+    +A+ L +++      P++ TY  ++
Sbjct: 394 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   + EA  V+  + + G+  DVV  + +++GL K  +  DA KL   M+  G +
Sbjct: 454 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 513

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V +YTI+I  FCK +               ++D       EM ++GC P  +TY+ +I
Sbjct: 514 PDVVAYTILIHGFCKAD---------------QLDKSLAFFSEMLDKGCVPTVITYSIVI 558

Query: 476 -KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
            KL K  ++ D    + K M+  G  P    Y  ++    ++ +Y+   +++  M + GC
Sbjct: 559 DKLCKSARVRD-GCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGC 617

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            P   +Y VL+  L    R  EA   LE M   G     + YN
Sbjct: 618 APTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYN 660


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 213/487 (43%), Gaps = 67/487 (13%)

Query: 163 SESEITSVSYK-STADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           S+S  TS+  + ST +P +       I    S    ++  L    I LS+ L+  VL+R 
Sbjct: 8   SKSPFTSILRRLSTFNPNDDVHKVYTILTTTSSPETLKQSLKSTQIFLSNELIDQVLKRV 67

Query: 222 R--HAR-RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GL 276
           R  HA       FF + G + GF H + + ++M+ ILGR+R F+ +  +L E   K   +
Sbjct: 68  RFGHANPNQTLEFFRYTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEARRKDQNV 127

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
           ++  T  + +   A     ++ V  F    K     GV+  N LL  L + K   +A+ +
Sbjct: 128 ITPRTVMVVLGRVAKVCSVRQTVETFRKFKKIVPDYGVNCFNALLRTLCQEKSMTDARNV 187

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           +  LKH F PNL T+ +LL GW   KN+ +A    NEM + G +PDVV +N +++   K 
Sbjct: 188 YHSLKHNFRPNLQTFNILLSGW---KNVEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKG 244

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
            +   A K+F+ M+ K  SP+V                 YT +I G G   + D   D+L
Sbjct: 245 REIEKAYKVFDEMREKDLSPDV---------------ITYTSVIGGLGLVGQPDKARDVL 289

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           KEM+E G  PD   YNA I+   I K    A  +  EMV  G  P   TYN+  + ++ +
Sbjct: 290 KEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWS 349

Query: 517 GNY-----------------------------------EMGRKVWDEMIRRGCCPDDNSY 541
            +                                    EM  ++W EM+ +G      SY
Sbjct: 350 NDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGF----GSY 405

Query: 542 T----VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
           T    VL   L    +  EA K   EM+EKG +   + + +    +  A +   +  L Q
Sbjct: 406 TLVSDVLFDMLCDMGKLMEAEKCFLEMIEKGQRPSNVSFKRIKVLMELANKHEAIQNLTQ 465

Query: 598 KMRFSGK 604
           KM   G+
Sbjct: 466 KMAIFGR 472



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           +NAL++ +  +K   +A  +Y  + +  F+P + T+N+++  +    N E      +EM 
Sbjct: 168 FNALLRTLCQEKSMTDARNVYHSL-KHNFRPNLQTFNILLSGW---KNVEDAELFVNEMK 223

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
             G  PD  +Y  L+          +AYK  +EM EK +   V+ Y      L   G+  
Sbjct: 224 EMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPD 283

Query: 591 VLDELAQKMRFSGKF 605
              ++ ++M+  G +
Sbjct: 284 KARDVLKEMKEYGVY 298


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 178/367 (48%), Gaps = 36/367 (9%)

Query: 239 PGFAHNSRT---YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           P  A +SR    Y++++  LGRARQF+    ++ E    G  +  TF +    + AA   
Sbjct: 94  PPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMT 153

Query: 296 KKAVAIFELMNKYKFK-AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           ++AV  F+ M  +  +         LL+ L + K PK A  +F+K K+++ PN   YTVL
Sbjct: 154 RQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVL 213

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL-----LKIGKRSD-----AIK 404
           + GWC+V     A +   +MI  G +P++V +NI+L G+     L    R D     A  
Sbjct: 214 IYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAED 273

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFG 444
           L + M  +G  PNV SY++++  + + +                     A YT +I    
Sbjct: 274 LLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLA 333

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG--FKPT 502
           +  R+D    LL EM   G  P   TYN   K  + +K  + A+++Y +M   G    P 
Sbjct: 334 SCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPD 393

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           IHTYN+++  + +   ++   +VW++M      PD NSYT+L+ GL    +  EA ++  
Sbjct: 394 IHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFM 453

Query: 563 EMLEKGM 569
           EM+E+G 
Sbjct: 454 EMIERGF 460



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 27/278 (9%)

Query: 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
             D  + +++ LGR++    A  L  +          T+ VL   +       +A R ++
Sbjct: 102 AADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFD 161

Query: 373 EM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           +M    G +PD      +L+ L K      A ++F   K K   PN + YT++I+ +CK 
Sbjct: 162 DMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKY-EPNEKMYTVLIYGWCKV 220

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQ 481
           N               R D+    LK+M   G  P+ +TYN L+  +          +  
Sbjct: 221 N---------------RNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFD 265

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +    A  + KEM + G +P + +Y++I+  Y +    E+   ++  M  RG CP   +Y
Sbjct: 266 RTVRAAEDLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATY 325

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           T +I  L S  R  +A   L+EM  +G+      YN F
Sbjct: 326 TSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCF 363



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  +Y+ ++ +  RA + E  + M   M E+G+  ++ T+   +   A+      A
Sbjct: 282 GIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDA 341

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---HRFTPNLTTYTVLL 355
            ++ + M          T NC  +     K    A  L++K+K      TP++ TY +LL
Sbjct: 342 ESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILL 401

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G + ++       +VWN+M +    PD+ ++ +++ GL    K  +A + F  M  +G  
Sbjct: 402 GMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 416 PN 417
           P 
Sbjct: 462 PQ 463


>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
          Length = 561

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 181/393 (46%), Gaps = 21/393 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L   GI+L+ ++V +V  R          FF WA  +P    +  TYN ++  LGR
Sbjct: 119 IELALTNVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGR 178

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            +  E  V +L++M  +G+  + ET  I M++F  A++  KA+ +F  + ++  K   ++
Sbjct: 179 RKFIEFXVXVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTES 238

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +N LL+ L +      A L F+ +K     N  TY +++GGW +   + E  R    M+ 
Sbjct: 239 LNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVA 298

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------- 428
            GF P+ +  + ++EGL + G+  DA+++F  M+  G  PN   Y  +I  F        
Sbjct: 299 DGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDE 358

Query: 429 ------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  N   YT LI  F   R++    ++L EM  RG  P      + I+
Sbjct: 359 CLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIE 418

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +     P  A+ IYK+  + G + ++  Y +++    + G   M   +WDEM   G   
Sbjct: 419 PLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSS 478

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           D   Y  +I GL +  +   A   +EE L KG 
Sbjct: 479 DTEVYEYVINGLCNIGQLDTAVLVMEESLXKGF 511



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 25/341 (7%)

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFK-----AGVD-TINCLLENLGRSKLPKEAQLLFD 338
           A++ F +  E+ + V I  L  K   +      G+D TI+ + E   R  L  EA + F 
Sbjct: 94  AVDGFLSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVXNRGNLGGEAMVXFF 153

Query: 339 K--LKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
              +K    P ++ TY V++    R K +     V  +M  +G  P+    +I+++  +K
Sbjct: 154 NWAVKQPTIPKDVDTYNVIIKALGRRKFIEFXVXVLKDMHIQGISPNYETLSIVMDSFIK 213

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
             + S AI++F  ++  G   +  S  +++   C+++         G  N     + ++ 
Sbjct: 214 ARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSH-------VGAAN-----LFFNA 261

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           +K     G P + +TYN +I          E  R  K MV  GF P   T++ +++   +
Sbjct: 262 MKG----GIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGR 317

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  +   +V+  M   GC P+   Y  LI   IS     E  KY   M+       +  
Sbjct: 318 AGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDT 377

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
           Y K      +A +     E+  +M   G    +  +  + E
Sbjct: 378 YTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIE 418



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY  ++    +AR+    + ML+EM  +G++ +       +           A+ I+
Sbjct: 374 NMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIY 433

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           +   K   +  +     LL  L R         L+D+++   ++ +   Y  ++ G C +
Sbjct: 434 KKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNI 493

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  V  E + KGF P  +  + +   LL   K   A KLF  +K    + N R +
Sbjct: 494 GQLDTAVLVMEESLXKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKXARQNDNARRF 553


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 185/388 (47%), Gaps = 22/388 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N  T N M++ L + ++ E   S L +M EKG+   + T+   +NA+      +
Sbjct: 90  RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 149

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  + + M+    K  V T N ++  L ++ K  +   +L + LK   +P+  TY +LL
Sbjct: 150 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 209

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR  N+M+A R+++EM  +G  PD+V+ + ++  L K G    A+K F  MK  G +
Sbjct: 210 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 269

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+   YTI+I  FC+                     +   Y  ++ G    + +    +L
Sbjct: 270 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 329

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM ERG  PD  T+  LI         ++AV +++ M++   KP + TYN ++  + +
Sbjct: 330 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 389

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               E   ++W++MI R   P+  SY +LI G  +     EA++  +EM+EKG +A ++ 
Sbjct: 390 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT 449

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
            N       RAG +   DE    M   G
Sbjct: 450 CNTIVKGYCRAGNAVKADEFLSNMLLKG 477



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 17/301 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TYN++++ L + +       +  EM E+G+     TF   +N ++      KA
Sbjct: 302 GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 361

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           V +FE+M +   K  V T N L++   + S++ K  +L  D +  R  PN  +Y +L+ G
Sbjct: 362 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 421

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C +  + EA R+W+EM++KGF+  ++  N +++G  + G    A +    M  KG  P+
Sbjct: 422 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD 481

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                             Y  LI GF     MD  + L+ +ME  G  PD +TYN ++  
Sbjct: 482 ---------------GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 526

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              Q    EA  I  +M+  G  P   TY  ++  +    N +   +V DEM++RG  PD
Sbjct: 527 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586

Query: 538 D 538
           D
Sbjct: 587 D 587



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 173/409 (42%), Gaps = 57/409 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   +  TYN++++   R    E    +++ M  KGL   + T+   +N      + 
Sbjct: 124 EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 183

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------------ 343
            +A  + + M K        T N LL    R+    +A+ +FD++  +            
Sbjct: 184 LRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 243

Query: 344 ------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
                                     P+   YT+L+GG+CR   + EA +V +EM+++G 
Sbjct: 244 IGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 303

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT----------------- 422
             DVV +N +L GL K    S+A +LF  M  +G  P+  ++T                 
Sbjct: 304 VLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVT 363

Query: 423 ---IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
              +MI +  K +   Y  LI GF     M+ V +L  +M  R   P+ ++Y  LI    
Sbjct: 364 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 423

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA R++ EMV  GF+ TI T N I+K Y + GN     +    M+ +G  PD  
Sbjct: 424 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI 483

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +Y  LI G I ++    A+  + +M   G+   V+ YN      SR GR
Sbjct: 484 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGR 532



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 158/331 (47%), Gaps = 17/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G A ++  Y  ++    R       + + +EM E+G +L + T+   +N     K   +A
Sbjct: 267 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEA 326

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M +        T   L+    +     +A  LF+ +  R   P++ TY  L+ G
Sbjct: 327 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 386

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + +   +WN+MI +   P+ +++ I++ G   +G  S+A +L++ M  KG    
Sbjct: 387 FCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 446

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +   ++  +C+             GN  + D   + L  M  +G  PDG+TYN LI  
Sbjct: 447 IITCNTIVKGYCRA------------GNAVKAD---EFLSNMLLKGIVPDGITYNTLING 491

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              ++  D A  +  +M  SG  P + TYN+I+  + + G  +    +  +MI RG  PD
Sbjct: 492 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 551

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            ++YT LI G ++Q+   EA++  +EML++G
Sbjct: 552 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 582



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 18/327 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            F + +  +  A++ ++    F ++        ++  N LL  L +      A  ++ ++
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            +     N+ T  +++   C+ + +       ++M +KG  PDVV +N ++    + G  
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 148

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A +L + M  KG  P V +Y  +I   CK          TG   R +      +L EM
Sbjct: 149 EEAFELMDSMSGKGLKPCVFTYNAIINGLCK----------TGKYLRAK-----GVLDEM 193

Query: 460 EERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
            + G  PD  TYN L ++  +   M D A RI+ EM   G  P + +++ ++    + G 
Sbjct: 194 LKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGLLSKNGC 252

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   K + +M   G  PD+  YT+LIGG        EA K  +EMLE+G    V+ YN 
Sbjct: 253 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNT 312

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKF 605
               L +       DEL  +M   G F
Sbjct: 313 ILNGLCKEKMLSEADELFTEMTERGVF 339


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 190/422 (45%), Gaps = 18/422 (4%)

Query: 167 ITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARR 226
           I S        P  +  + +V+ +  +   ++E  L      +S NLV  VL+R ++   
Sbjct: 24  IFSTLLHDPPSPELVNEISRVLSDHRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGF 83

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM--ETFKI 284
           PA RFF WA   P F H+  +Y+ ++ ILG ++QF  +   L E  E     +  + F I
Sbjct: 84  PAHRFFLWAKRIPDFEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWI 143

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HR 343
              A++ A    +A   F  M ++  K  VD ++ LL +L   K    AQ  FDK K   
Sbjct: 144 VFRAYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFG 203

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P+  TY++L+ GW R+++   A +V++EM++     D++A+N +L+ L K G    A 
Sbjct: 204 IVPSAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAY 263

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           K+F+ M   G  P+  S+ I I  +C  +                +   Y +L  M+   
Sbjct: 264 KMFQEMGNLGLKPDAYSFAIFIHSYCDASD---------------VHSAYQVLDRMKRYD 308

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+  T+N +IK +   +  D+A  +  EM++ G  P   TYN IM  +          
Sbjct: 309 LVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRAT 368

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K+   M R  C PD ++Y +++  LI   R     +  E M E+     V  Y      L
Sbjct: 369 KLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGL 428

Query: 584 SR 585
            R
Sbjct: 429 VR 430



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 22/280 (7%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           S +T+ I +  +A  ++   A  +F+ M +      +   N LL+ L +S     A  +F
Sbjct: 207 SAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMF 266

Query: 338 DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            ++ +    P+  ++ + +  +C   ++  A +V + M      P+V   N +++ L K 
Sbjct: 267 QEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKN 326

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSY-TIMIWK--FCKQNAAV-----------------Y 436
            K  DA  L + M  KG +P+  +Y +IM +    C+ N A                  Y
Sbjct: 327 EKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTY 386

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMV 495
             ++       R D V ++ + M ER   P   TY  +I  L++ +   +EA R ++ M+
Sbjct: 387 NMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMI 446

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             G  P   T  M+       G  ++   +  +M R   C
Sbjct: 447 DEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSC 486



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 1/153 (0%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           Y  L+   G  ++  +++D L E  E          +  + +      +P EA R +  M
Sbjct: 105 YHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEASRAFNRM 164

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           V  G KP +   + ++ S     +    ++ +D+    G  P   +Y++L+ G      +
Sbjct: 165 VEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTYSILVRGWARIRDA 224

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             A K  +EMLE      +L YN     L ++G
Sbjct: 225 SGARKVFDEMLENNCVVDLLAYNALLDALCKSG 257



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  T+N ++  L +  + +    +L+EM +KG      T+   M       E  +A  + 
Sbjct: 312 NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLL 371

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
             M++ K      T N +L+ L R  +  +  ++     + +F P + TYTV++ G  R 
Sbjct: 372 SRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRK 431

Query: 362 K-NLMEAGRVWNEMIDKGFKP 381
           K  L EA R +  MID+G  P
Sbjct: 432 KGKLEEACRYFEMMIDEGIPP 452


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 191/422 (45%), Gaps = 18/422 (4%)

Query: 167 ITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARR 226
           I S        P  +  + +V+ +  +   ++E  L      +S NLV  VL+R ++   
Sbjct: 24  IFSTLLHDPPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGF 83

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--LSMETFKI 284
           PA RFF WA   P FAH+  +Y+ ++ ILG ++QF  +   L E  E     +S + F I
Sbjct: 84  PAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWI 143

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HR 343
              A++ A    +A   F  M ++  K  VD ++ LL +L   K    AQ  F K K   
Sbjct: 144 VFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFG 203

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P+  TY++L+ GW R+++   A +V++EM+++    D++A+N +L+ L K G      
Sbjct: 204 IVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGY 263

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           K+F+ M   G  P+  S+ I I  +C                   +   Y +L  M+   
Sbjct: 264 KMFQEMGNLGLKPDAYSFAIFIHAYCDAGD---------------VHSAYKVLDRMKRYD 308

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+  T+N +IK +   +  D+A  +  EM++ G  P   TYN IM  +          
Sbjct: 309 LVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRAT 368

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K+   M R  C PD ++Y +++  LI   R   A +  E M E+     V  Y      L
Sbjct: 369 KLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGL 428

Query: 584 SR 585
            R
Sbjct: 429 VR 430



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           Y  L+   G+ ++  +++D L E  E          +  + +      +P EA R +  M
Sbjct: 105 YHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRM 164

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           V  G KP +   + ++ S     +    ++ + +    G  P   +Y++L+ G      +
Sbjct: 165 VEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDA 224

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             A K  +EMLE+     +L YN     L ++G
Sbjct: 225 SGARKVFDEMLERNCVVDLLAYNALLDALCKSG 257



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M E G  P     + L+  +  +K  + A   + +    G  P+  TY+++++ + +  +
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
               RKV+DEM+ R C  D  +Y  L+  L         YK  +EM   G+K     +  
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283

Query: 579 FAADLSRAGRSYVLDELAQKMR 600
           F      AG  +   ++  +M+
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMK 305



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  T+N ++  L +  + +    +L+EM +KG      T+   M       E  +A  + 
Sbjct: 312 NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLL 371

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M++ K      T N +L+ L R      A  +++ +  R F P + TYTV++ G  R 
Sbjct: 372 SRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRK 431

Query: 362 K-NLMEAGRVWNEMIDKGFKP 381
           K  L EA R +  MID+G  P
Sbjct: 432 KGKLEEACRYFEMMIDEGIPP 452


>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
          Length = 680

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/547 (23%), Positives = 247/547 (45%), Gaps = 47/547 (8%)

Query: 105 LHSLQKVLLNKSTNVVASSLTNHNLAT-------NILDSNCVNYRNVSSVTDDNQDSDGE 157
           + SL++V  +   N++++SL N  L T        ++D + V     S +   +  +   
Sbjct: 9   IESLRRVHSSDLENLISASLYNRTLCTASESLNHGVVDESYVLAELSSLLPISSNKTSVS 68

Query: 158 CDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDV 217
            + ++S++++   S+ S  D     ++  V  +       ++  L   GI LS ++V DV
Sbjct: 69  KEDSSSKNQVAIDSFLSAED-----KLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADV 123

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL- 276
           L R   +      FF WA  +PG   +  +Y+ ++  LGR + F  M+ +L+ M  +G+ 
Sbjct: 124 LNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVN 183

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             +E   IAM++F      ++A+ +FE    +  K   ++ N LL  L        A+ +
Sbjct: 184 PDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSV 243

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           F+  K     +  +Y +++ GW ++  + E  +V  EM++ GF PD ++++ ++EGL + 
Sbjct: 244 FNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRT 303

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVY 436
           G+ +D++++F+ +K KG  P+   Y  MI  F                    C+ N   Y
Sbjct: 304 GRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETY 363

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           + L++G    R++    ++ +EM  RG  P      + +K +     P  A+ IY++  +
Sbjct: 364 SKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRK 423

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
           +G + +   Y +++K   + G   M   VWDEM   G   D   Y  ++ GL        
Sbjct: 424 AGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLEN 483

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN---VLAR 613
           A   +EE + KG       Y++ +          ++ +  QK R  GK E+     +  R
Sbjct: 484 AVLVMEEAMRKGFCPNRFVYSRLS----------IIRKWQQKFR-KGKEEMEKWEALQVR 532

Query: 614 WAETTKN 620
           W    +N
Sbjct: 533 WVSLFRN 539


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 191/401 (47%), Gaps = 37/401 (9%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWA----GDKPGFAHNSRTYNSMMSILGRARQF 261
           G++LS +L+V +L R R A + A      A            N+  Y++++  LGRA QF
Sbjct: 71  GVSLSQSLLVQILLRLRGASKLALSLLNSARLHPSPSVSSPPNADAYDAVVDALGRAHQF 130

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AGVDTINCL 320
           +    ++ E    G  +  TF +    + AA   ++AV  F+ M  +  +         L
Sbjct: 131 DAAWRLVVEAAADGAATSRTFAVLARRYVAAGMTRQAVRAFDDMEAFVGREPDAGEFTTL 190

Query: 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           L+ L + K PK A  +F+K K+++ PN   YT+L+ GWC+V     + +   +MID G +
Sbjct: 191 LDTLCKYKYPKVATEVFNKRKYKYEPNEKMYTILIYGWCKVNRNDMSQKFLKDMIDHGIE 250

Query: 381 PDVVAHNIMLEGL-----LKIGKRSD-----AIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           P+VV +NI+L G+     L    R D     A  L + M+ +G  P+V SY+I++  + +
Sbjct: 251 PNVVTYNILLNGVCRHASLHPDNRFDRTVRAAEDLLKEMRDRGIEPDVTSYSIVLHVYSR 310

Query: 431 QN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
            +                     A YT +I    +  R++    LL EM   G  P   T
Sbjct: 311 AHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAERLLHEMASEGVCPSPAT 370

Query: 471 YNALIKLMKIQKMPDEAVRIYKEM--VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           YN   K  + +K    A+ +YK+M    S   P IH+Y++++  + +   +    ++W++
Sbjct: 371 YNCFFKEYRGRKDVIGALELYKKMKAPASPTAPDIHSYHILLGMFVKLNQHGTVTELWND 430

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           M      PD +SYT+LI G    ++  EA ++  EM+EKG 
Sbjct: 431 MCESTVGPDLDSYTLLIHGFCENEKWREACQFFMEMIEKGF 471



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 31/300 (10%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            D  + +++ LGR+     A  L  +          T+ VL   +       +A R +++
Sbjct: 114 ADAYDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVLARRYVAAGMTRQAVRAFDD 173

Query: 374 M-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           M    G +PD      +L+ L K      A ++F   K K   PN + YTI+I+ +CK N
Sbjct: 174 MEAFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRKYKY-EPNEKMYTILIYGWCKVN 232

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQK 482
                          R D+    LK+M + G  P+ +TYN L+  +          +  +
Sbjct: 233 ---------------RNDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDR 277

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A  + KEM   G +P + +Y++++  Y +    E+   ++  M  RG CP   +YT
Sbjct: 278 TVRAAEDLLKEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYT 337

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD--ELAQKMR 600
            +I  L S  R  +A + L EM  +G+      YN F  +    GR  V+   EL +KM+
Sbjct: 338 SVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYR--GRKDVIGALELYKKMK 395



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  +Y+ ++ +  RA + E  + M   M ++G+  ++ T+   +   A+    + A
Sbjct: 293 GIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDA 352

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP---NLTTYTVLL 355
             +   M          T NC  +     K    A  L+ K+K   +P   ++ +Y +LL
Sbjct: 353 ERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASPTAPDIHSYHILL 412

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G + ++        +WN+M +    PD+ ++ +++ G  +  K  +A + F  M  KG  
Sbjct: 413 GMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREACQFFMEMIEKGFL 472

Query: 416 PNVRSYTIM 424
           P   ++ I+
Sbjct: 473 PQKITFEIL 481



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      TY S++  L    + E    +L EM  +G+  S  T+      F   + RK  
Sbjct: 328 GICPTVATYTSVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCF---FKEYRGRKDV 384

Query: 299 VAIFELMNKYKFKAG-----VDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYT 352
           +   EL  K K  A      + + + LL    + ++     +L  D  +    P+L +YT
Sbjct: 385 IGALELYKKMKAPASPTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYT 444

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           +L+ G+C  +   EA + + EMI+KGF P  +   I+  GL++
Sbjct: 445 LLIHGFCENEKWREACQFFMEMIEKGFLPQKITFEILYRGLIQ 487


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 227/480 (47%), Gaps = 57/480 (11%)

Query: 142 RNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAV 201
           R  SS+ + N  SD +     +++ + ++   + AD      + +++    +    ME+ 
Sbjct: 23  RFFSSIQNHNFSSDNDAFSPRNDTLLPTLQPSNDAD-----LLSQILLHHHNPFHAMESS 77

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR--------------- 246
           L   GI+L+ +L+   L R RH  + A   F  +   P  + ++                
Sbjct: 78  LQLPGISLTPSLLHQTLLRLRHNSKIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSST 137

Query: 247 ----TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAI 301
               TYN M+ IL + RQF+    ++ EM ++ +  + ETF + +    AA   ++A+  
Sbjct: 138 ATTVTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRA 197

Query: 302 FELMNKYKFKAGVDTINC-LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           F+ M  +  +   +T  C LL+ L +    K    +F+K KHRF+PN+  YTVL+ GWC+
Sbjct: 198 FDDMESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCK 257

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD----------AIKLFEVMK 410
           +  +  A R   E  ++G +  VV +N++L G+ +                A  LF+ M+
Sbjct: 258 IGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMR 317

Query: 411 AKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMD 450
            +G  P+V S++I++  + + +                       YT ++    +  R++
Sbjct: 318 ERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIE 377

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMI 509
              +LL EM   G     +TYN   K    +K  + A+++YK+M   G     +H+YN++
Sbjct: 378 DAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYNIL 437

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           ++ +      ++  ++W+++   G  PD +SYT+LI GL  +++  EA K+  EM+EKG+
Sbjct: 438 LRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGL 497



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 118/285 (41%), Gaps = 30/285 (10%)

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TY +++    +V+      ++  EM  +  KP      +++  L+  G    AI+ F+ 
Sbjct: 141 VTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDD 200

Query: 409 MKAKGPSP-NVRSYTIMIWKFCK-------------------QNAAVYTCLITGFGNRRR 448
           M++    P N   +  ++   CK                    N  +YT LI G+    R
Sbjct: 201 MESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGR 260

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQKMPDEAVRIYKEMVRSG 498
           +D+    LKE  ERG     +TYN L+  +          + ++    A  ++ EM   G
Sbjct: 261 IDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERG 320

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P + ++++++  Y +    E+       M  +G CP   +YT ++  L S  R  +A 
Sbjct: 321 IEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAE 380

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + L EM+  G+    + YN F  +      +    +L +KMR  G
Sbjct: 381 ELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDG 425


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 196/401 (48%), Gaps = 24/401 (5%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-RP--AFRFFCWA 235
           + IE V ++I    S   +M+  L+   + LS+ L+  VL+R R +   P  A  FF + 
Sbjct: 40  QNIETVFRIITTS-SSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYT 98

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAAK 293
             + GF H S + ++M+ ILGR+R+F+ +  +L ++  K   L+S+ T  + +   A   
Sbjct: 99  AKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVC 158

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
             ++ V  F    K+  +  V   N LL  L + K   +A+ ++  LK  F PNL T+ +
Sbjct: 159 SVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKSMFRPNLQTFNI 218

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           LL GW   K+  EA   ++EMI+ G KPDVV++N +++   K  +   A K+   M+ + 
Sbjct: 219 LLSGW---KSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDED 275

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
              +V                 YT +I G G   + D   ++LKEM+E GC PD   YNA
Sbjct: 276 IPADV---------------ITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNA 320

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            I+   I K   EA  +  EMV  G  P   TYN+  + +F + + +    ++  M+  G
Sbjct: 321 TIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTG 380

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           C P+  S   L+      ++   A +   +M++KG  + +L
Sbjct: 381 CLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYIL 421



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 27/269 (10%)

Query: 316 TINCLLENLGRS-KLPKEAQLLFD-KLKHRFTPNLTTYTVLLG---GWCRVKNLMEAGRV 370
           +++ +L  LGRS K  K   +L D K K     +L T  V+LG     C V+  +E+ R 
Sbjct: 110 SVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRK 169

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           + + + +    DV   N +L  L +     DA  ++  +K+    PN++++ I       
Sbjct: 170 FKKFVPEF---DVTCFNALLRTLCQEKSMMDARNVYHGLKSMF-RPNLQTFNI------- 218

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   L++G+ +    +  +D   EM E G  PD ++YN L+ +    +  D+A ++
Sbjct: 219 --------LLSGWKSSEEAEGFFD---EMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKV 267

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             +M        + TY  I+      G  +  R +  EM   GC PD  +Y   I     
Sbjct: 268 VGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCI 327

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             R  EA+  L+EM+ KG+      YN F
Sbjct: 328 AKRLHEAFDLLDEMVNKGLSPNATTYNLF 356



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 31/240 (12%)

Query: 369 RVWNEMIDKGFK-PDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKAKGPSPNVRSYTIM 424
           ++W+ ++D  FK P +++   ++  L +I K       ++ F   K   P  +V  +  +
Sbjct: 126 KIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNAL 185

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDI--VYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           +   C++ +               MD   VY  LK M      P+  T+N L+   K   
Sbjct: 186 LRTLCQEKSM--------------MDARNVYHGLKSMFR----PNLQTFNILLSGWKSS- 226

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             +EA   + EM+  G KP + +YN ++  Y +    +   KV  +M       D  +YT
Sbjct: 227 --EEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYT 284

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQK 598
            +IGGL    +  +A   L+EM E G    V  YN    +   A R +    +LDE+  K
Sbjct: 285 SIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNK 344



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 37/219 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  +YN ++ +  + R+ +    ++ +M ++ + + + T+   +       +  KA
Sbjct: 240 GVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKA 299

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL-- 355
             I + M +Y     V   N  + N   +K   EA  L D++ ++  +PN TTY +    
Sbjct: 300 RNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRI 359

Query: 356 --------GGWCRVKNLMEAG-------------------------RVWNEMIDKGFKPD 382
                     W   + +M+ G                          +WN+MI KGF   
Sbjct: 360 FFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSY 419

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           ++    + + L  +GK  +A   F  M  KG  P+  S+
Sbjct: 420 ILVSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSF 458


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 196/401 (48%), Gaps = 24/401 (5%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-RP--AFRFFCWA 235
           + IE V ++I    S   +M+  L+   + LS+ L+  VL+R R +   P  A  FF + 
Sbjct: 40  QNIETVFRIITTS-SSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYT 98

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAAK 293
             + GF H S + ++M+ ILGR+R+F+ +  +L ++  K   L+S+ T  + +   A   
Sbjct: 99  AKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVC 158

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
             ++ V  F    K+  +  V   N LL  L + K   +A+ ++  LK  F PNL T+ +
Sbjct: 159 SVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKSMFRPNLQTFNI 218

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           LL GW   K+  EA   ++EMI+ G KPDVV++N +++   K  +   A K+   M+ + 
Sbjct: 219 LLSGW---KSSEEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDED 275

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
              +V                 YT +I G G   + D   ++LKEM+E GC PD   YNA
Sbjct: 276 IPADV---------------ITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNA 320

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            I+   I K   EA  +  EMV  G  P   TYN+  + +F + + +    ++  M+  G
Sbjct: 321 TIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTG 380

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           C P+  S   L+      ++   A +   +M++KG  + +L
Sbjct: 381 CLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYIL 421



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 27/269 (10%)

Query: 316 TINCLLENLGRS-KLPKEAQLLFD-KLKHRFTPNLTTYTVLLG---GWCRVKNLMEAGRV 370
           +++ +L  LGRS K  K   +L D K K     +L T  V+LG     C V+  +E+ R 
Sbjct: 110 SVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRK 169

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           + + + +    DV   N +L  L +     DA  ++  +K+    PN++++ I       
Sbjct: 170 FKKFVPEF---DVTCFNALLRTLCQEKSMMDARNVYHGLKSMF-RPNLQTFNI------- 218

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   L++G+ +    +  +D   EM E G  PD ++YN L+ +    +  D+A ++
Sbjct: 219 --------LLSGWKSSEEAEGFFD---EMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKV 267

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             +M        + TY  I+      G  +  R +  EM   GC PD  +Y   I     
Sbjct: 268 VGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCI 327

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             R  EA+  L+EM+ KG+      YN F
Sbjct: 328 AKRLHEAFDLLDEMVNKGLSPNATTYNLF 356



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 31/240 (12%)

Query: 369 RVWNEMIDKGFK-PDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKAKGPSPNVRSYTIM 424
           ++W+ ++D  FK P +++   ++  L +I K       ++ F   K   P  +V  +  +
Sbjct: 126 KIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNAL 185

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDI--VYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           +   C++ +               MD   VY  LK M      P+  T+N L+   K   
Sbjct: 186 LRTLCQEKSM--------------MDARNVYHGLKSMFR----PNLQTFNILLSGWKSS- 226

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             +EA   + EM+  G KP + +YN ++  Y +    +   KV  +M       D  +YT
Sbjct: 227 --EEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYT 284

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQK 598
            +IGGL    +  +A   L+EM E G    V  YN    +   A R +    +LDE+  K
Sbjct: 285 SIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNK 344



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 37/219 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  +YN ++ +  + R+ +    ++ +M ++ + + + T+   +       +  KA
Sbjct: 240 GVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKA 299

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL-- 355
             I + M +Y     V   N  + N   +K   EA  L D++ ++  +PN TTY +    
Sbjct: 300 RNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRI 359

Query: 356 --------GGWCRVKNLMEAG-------------------------RVWNEMIDKGFKPD 382
                     W   + +M+ G                          +WN+MI KGF   
Sbjct: 360 FFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSY 419

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           ++    + + L  +GK  +A   F  M  KG  P+  S+
Sbjct: 420 ILVSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSF 458


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 178/367 (48%), Gaps = 36/367 (9%)

Query: 239 PGFAHNSRT---YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           P  A +SR    Y++++  LGRARQF+    ++ E    G  +  TF +    + AA   
Sbjct: 94  PPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMT 153

Query: 296 KKAVAIFELMNKYKFK-AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           ++AV  F+ M  +  +         LL+ L + K PK A  +F+K K+++ PN   YTVL
Sbjct: 154 RQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVL 213

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL-----LKIGKRSD-----AIK 404
           + GWC+V     A +   +MI  G +P++V +NI+L G+     L    R D     A  
Sbjct: 214 IYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAED 273

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFG 444
           L + M  +G  P+V SY++++  + + +                     A YT +I    
Sbjct: 274 LLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLA 333

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG--FKPT 502
           +  R+D    LL EM   G  P   TYN   K  + +K  + A+++Y +M   G    P 
Sbjct: 334 SCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPD 393

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           IHTYN+++  + +   ++   +VW++M      PD NSYT+L+ GL    +  EA ++  
Sbjct: 394 IHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFM 453

Query: 563 EMLEKGM 569
           EM+E+G 
Sbjct: 454 EMIERGF 460



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 27/278 (9%)

Query: 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
             D  + +++ LGR++    A  L  +          T+ VL   +       +A R ++
Sbjct: 102 AADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFD 161

Query: 373 EM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           +M    G +PD      +L+ L K      A ++F   K K   PN + YT++I+ +CK 
Sbjct: 162 DMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKY-EPNEKMYTVLIYGWCKV 220

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQ 481
           N               R D+    LK+M   G  P+ +TYN L+  +          +  
Sbjct: 221 N---------------RNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFD 265

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +    A  + KEM + G +P + +Y++I+  Y +    E+   ++  M  RG CP   +Y
Sbjct: 266 RTVRAAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATY 325

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           T +I  L S  R  +A   L+EM  +G+      YN F
Sbjct: 326 TSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCF 363



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  +Y+ ++ +  RA + E  + M   M E+G+  ++ T+   +   A+      A
Sbjct: 282 GIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDA 341

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---HRFTPNLTTYTVLL 355
            ++ + M          T NC  +     K    A  L++K+K      TP++ TY +LL
Sbjct: 342 ESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILL 401

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G + ++       +VWN+M +    PD+ ++ +++ GL    K  +A + F  M  +G  
Sbjct: 402 GMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 416 PN 417
           P 
Sbjct: 462 PQ 463


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 185/367 (50%), Gaps = 19/367 (5%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           ++ ++ T   ++  L ++ + E     +E++  KGL  + TF I ++    A     A  
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQT 71

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWC 359
           +F+ M K+ F     T N LL  L       +AQ L+++ +K  ++P++ TY  LL G+C
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +V  L EA ++++  + +GF PDVV +N ++ G  K  K  +A ++ + M ++   P+V 
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 420 SYTIMIWKFCKQ-----------------NAAVYTCLITGFGNR-RRMDIVYDLLKEMEE 461
           +Y  ++   CK                  N   Y+ LI+G     RR++    LL++M  
Sbjct: 192 TYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVL 251

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            GC PD ++YNALI  +  ++   EA++++  ++R G++P + TYN+++    +      
Sbjct: 252 NGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNE 311

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             +++  +++ G  PD  +YTV I GL    R  +A   L++M EKG    V+ +N    
Sbjct: 312 AFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVIN 371

Query: 582 DLSRAGR 588
            L +  R
Sbjct: 372 GLCKEKR 378



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 184/376 (48%), Gaps = 27/376 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G++ +  TYN+++    +  + +  + + +   ++G +  + T+   +N F  A +  
Sbjct: 113 KAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A  I + M        V T N L+  L ++    EA++L   +   F+PN+ TY+ L+ 
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSPNVITYSTLIS 230

Query: 357 GWCR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G CR ++ L  A ++  +M+  G KPD+V++N ++ GL +    S+A+KLF  +  +G  
Sbjct: 231 GLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYE 290

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           P V +Y I+I    K++                    A  YT  I G     R++    +
Sbjct: 291 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 350

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           LK+M+E+GC PD +++NA+I  +  +K  DEA  +   M   G  P   ++N ++    +
Sbjct: 351 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 410

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG---EAYKYLEEMLEKGMKAP 572
            G ++     + EM++RG  P   +Y +L+ GL    + G   EA    + M+EKG    
Sbjct: 411 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 470

Query: 573 VLDYNKFAADLSRAGR 588
           V+ Y+     L +AG+
Sbjct: 471 VVTYSALIDGLGKAGK 486



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 172/352 (48%), Gaps = 21/352 (5%)

Query: 240 GFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           GF+ N  TY++++S L R  R+ E+   +LE+M   G    + ++   ++  A  +   +
Sbjct: 217 GFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSE 276

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A+ +F  + +  ++  V T N L++ L +     EA  LF  L KH   P+  TYTV + 
Sbjct: 277 ALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 336

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   + +A  +  +M +KG  PDVV+HN ++ GL K  +  +A  L   M+AKG SP
Sbjct: 337 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 396

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           N  S+  +I   C+  A  +   +T F             KEM +RG  P  +TYN L+ 
Sbjct: 397 NAISFNTLICGQCR--AGKWKKAMTTF-------------KEMLKRGVKPTVVTYNILVD 441

Query: 477 LM---KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            +   + +    EA+ ++  M+  G  P + TY+ ++    + G  +  R++   M  +G
Sbjct: 442 GLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKG 501

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           C P+  +Y  LI GL   D+  EA +    M+EKG     + Y    + L +
Sbjct: 502 CIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCK 553



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 139/340 (40%), Gaps = 87/340 (25%)

Query: 336 LFDKLKHRFTP----------------------------------NLTTYTVLLGGWCRV 361
           ++DKL   ++P                                  +++T+ + + G CR 
Sbjct: 4   VYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRA 63

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  V++ M   GF P+ + +N +L GL   G+ SDA  L+E M   G SP+V +Y
Sbjct: 64  SRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTY 123

Query: 422 TIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             ++  FCK                     +   Y  LI GF    ++D    +L+ M  
Sbjct: 124 NTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 183

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDE---------------------------------AV 488
               PD +TYN+L+  +      DE                                 A 
Sbjct: 184 ESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESAR 243

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++ ++MV +G KP I +YN ++    +        K++  ++R+G  P+  +Y +LI GL
Sbjct: 244 QLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGL 303

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           + +DR  EA++    +++ G++   + Y  F   L +AGR
Sbjct: 304 LKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGR 343


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 189/378 (50%), Gaps = 22/378 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ T N M+    +A +F+ + +++ EM ++ +   + T  + ++A   A + + A+A+ 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRV 361
           + M     K G+ T N +L+ L RS +  +A  +F ++      P++ ++T+L+GG+CRV
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 213

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA +++ EM  +G KPD+V+ + ++    + GK   A+     M+  G  P+   Y
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 273

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           T++I  FC+                     +   Y  L+ G    RR+     LL EM E
Sbjct: 274 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 333

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           RG PPD  T+  LI    I+   D+A++++  M+    +P I TYN ++    + G+ + 
Sbjct: 334 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK 393

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              +WD+M  R   P+  +Y++LI     + +  +A+ +L+EM+ KG+   ++ YN    
Sbjct: 394 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 453

Query: 582 DLSRAGRSYVLDELAQKM 599
              R+G      +  QKM
Sbjct: 454 GYCRSGNVSKGQKFLQKM 471



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 186/401 (46%), Gaps = 24/401 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++HN++VD   RFR     A      +    G      TYNS++  L R+  ++    + 
Sbjct: 131 VTHNVMVDA--RFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVF 188

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR- 326
           +EM + G+   + +F I +  F    E ++A+ I++ M     K  + + +CL+    R 
Sbjct: 189 KEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARR 248

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K+      L +       P+   YT+++GG+CR   + +A RV +EM+  G  PDVV +
Sbjct: 249 GKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTY 308

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----------------- 429
           N +L GL K  +  DA  L   M+ +G  P++ ++T +I  +C                 
Sbjct: 309 NTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN 368

Query: 430 ---KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
              + +   Y  LI G   +  +D   DL  +M  R   P+ +TY+ LI     +   ++
Sbjct: 369 QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVED 428

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A     EM+  G  P I TYN I+K Y ++GN   G+K   +M+     PD  +Y  LI 
Sbjct: 429 AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH 488

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           G I +D+  +A+K L  M ++ ++  V+ YN      S  G
Sbjct: 489 GYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHG 529



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 170/352 (48%), Gaps = 24/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   +  +++ ++ +  R  + +  ++ L EM   GL+     + + +  F  A     A
Sbjct: 230 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 289

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + + M        V T N LL  L + +   +A+ L ++++ R   P+L T+T L+ G
Sbjct: 290 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 349

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C    L +A ++++ M+++  +PD+V +N +++G+ + G    A  L++ M ++   PN
Sbjct: 350 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN 409

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y+I+I   C++                    N   Y  +I G+     +      L+
Sbjct: 410 HVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQ 469

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M      PD +TYN LI   +K  KM D A ++   M +   +P + TYNM++  +   
Sbjct: 470 KMMVNKVSPDLITYNTLIHGYIKEDKMHD-AFKLLNMMEKEKVQPDVVTYNMLINGFSVH 528

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           GN +    ++++M  +G  PD  +Y  +I G ++   S EA++  +EML++G
Sbjct: 529 GNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 54/119 (45%)

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+   +  EM +    P + T+N+++ + F+ G+ E    + D M+ +G  P   +Y  +
Sbjct: 112 DKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSV 171

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + GL       +A++  +EM + G+   V  +        R G      ++ ++MR  G
Sbjct: 172 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG 230



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 48/104 (46%)

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P  A   Y+ +  S  +   +T N+++ +Y +   ++    V  EM +R   PD  ++ V
Sbjct: 76  PHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNV 135

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           ++        +  A   ++ M+ KG+K  ++ YN     L R+G
Sbjct: 136 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 179


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 189/378 (50%), Gaps = 22/378 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ T N M+    +A +F+ + +++ EM ++ +   + T  + ++A   A + + A+A+ 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRV 361
           + M     K G+ T N +L+ L RS +  +A  +F ++      P++ ++T+L+GG+CRV
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 274

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA +++ EM  +G KPD+V+ + ++    + GK   A+     M+  G  P+   Y
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           T++I  FC+                     +   Y  L+ G    RR+     LL EM E
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 394

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           RG PPD  T+  LI    I+   D+A++++  M+    +P I TYN ++    + G+ + 
Sbjct: 395 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK 454

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              +WD+M  R   P+  +Y++LI     + +  +A+ +L+EM+ KG+   ++ YN    
Sbjct: 455 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514

Query: 582 DLSRAGRSYVLDELAQKM 599
              R+G      +  QKM
Sbjct: 515 GYCRSGNVSKGQKFLQKM 532



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 186/401 (46%), Gaps = 24/401 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++HN++VD   RFR     A      +    G      TYNS++  L R+  ++    + 
Sbjct: 192 VTHNVMVDA--RFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVF 249

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR- 326
           +EM + G+   + +F I +  F    E ++A+ I++ M     K  + + +CL+    R 
Sbjct: 250 KEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARR 309

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K+      L +       P+   YT+++GG+CR   + +A RV +EM+  G  PDVV +
Sbjct: 310 GKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTY 369

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----------------- 429
           N +L GL K  +  DA  L   M+ +G  P++ ++T +I  +C                 
Sbjct: 370 NTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN 429

Query: 430 ---KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
              + +   Y  LI G   +  +D   DL  +M  R   P+ +TY+ LI     +   ++
Sbjct: 430 QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVED 489

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A     EM+  G  P I TYN I+K Y ++GN   G+K   +M+     PD  +Y  LI 
Sbjct: 490 AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH 549

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           G I +D+  +A+K L  M ++ ++  V+ YN      S  G
Sbjct: 550 GYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHG 590



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ L + R+      +L EM E+G+   + TF   ++ +    +  KA+ +F+ M
Sbjct: 368 TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 427

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
              + +  + T N L++ + R     +A  L+D +  R   PN  TY++L+   C    +
Sbjct: 428 LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQV 487

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A    +EMI+KG  P+++ +N +++G  + G  S   K  + M     SP++ +Y  +
Sbjct: 488 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 547

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I  + K++               +M   + LL  ME+    PD +TYN LI    +    
Sbjct: 548 IHGYIKED---------------KMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNV 592

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA  I+++M   G +P  +TY  ++  +   GN +   ++ DEM++RG  PDD
Sbjct: 593 QEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 172/356 (48%), Gaps = 25/356 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   +  +++ ++ +  R  + +  ++ L EM   GL+     + + +  F  A     A
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + + M        V T N LL  L + +   +A+ L ++++ R   P+L T+T L+ G
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 410

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C    L +A ++++ M+++  +PD+V +N +++G+ + G    A  L++ M ++   PN
Sbjct: 411 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN 470

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y+I+I   C++                    N   Y  +I G+     +      L+
Sbjct: 471 HVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQ 530

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M      PD +TYN LI   +K  KM D A ++   M +   +P + TYNM++  +   
Sbjct: 531 KMMVNKVSPDLITYNTLIHGYIKEDKMHD-AFKLLNMMEKEKVQPDVVTYNMLINGFSVH 589

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           GN +    ++++M  +G  PD  +Y  +I G ++   S EA++  +EML++G  AP
Sbjct: 590 GNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF-AP 644



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 54/119 (45%)

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+   +  EM +    P + T+N+++ + F+ G+ E    + D M+ +G  P   +Y  +
Sbjct: 173 DKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSV 232

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + GL       +A++  +EM + G+   V  +        R G      ++ ++MR  G
Sbjct: 233 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG 291



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 48/104 (46%)

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P  A   Y+ +  S  +   +T N+++ +Y +   ++    V  EM +R   PD  ++ V
Sbjct: 137 PHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNV 196

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           ++        +  A   ++ M+ KG+K  ++ YN     L R+G
Sbjct: 197 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 240


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 165/335 (49%), Gaps = 20/335 (5%)

Query: 240 GFAHNSRTYNSMMS---ILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           GF  N  TYN+++     +GR  +     ++L+EM E  +     TF + ++ F   +  
Sbjct: 260 GFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENL 319

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
             A+ +FE M     K  V T N L+  L       EA++L D+ L     PN+ TY  L
Sbjct: 320 SAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNAL 379

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+ K L EA  +++ +  +G  P+V+  N +L G  K GK  +A  L +VM  KG 
Sbjct: 380 INGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGF 439

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            PN               A+ Y CLI GF    +M+ V +LL EM+ RG   D +TYN L
Sbjct: 440 LPN---------------ASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNIL 484

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I     +K P +A R+  EM+  G KP+  TYN+++  Y   GN      +  +M + G 
Sbjct: 485 ISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGR 544

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +  +Y VLI G   + +  +A   L EMLEKG+
Sbjct: 545 WANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGL 579



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 185/392 (47%), Gaps = 36/392 (9%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N ++S L +  +F  +  + +EM  + +  ++ TF   +N      +  KA  + + M  
Sbjct: 199 NPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKV 258

Query: 308 YKFKAGVDTINCLLEN---LGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           + F   V T N L++    +GR  K+ K   +L + ++++ +PN  T+ VL+ G+C+ +N
Sbjct: 259 WGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDEN 318

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L  A +V+ EM  +G KP VV +N ++ GL   GK ++A  L + M +    PNV +Y  
Sbjct: 319 LSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNA 378

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQK 482
           +I  +CK               ++ ++   +L   + ++G  P+ +T+N L+    K  K
Sbjct: 379 LINGYCK---------------KKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGK 423

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M +EA  + K M+  GF P   TYN ++  + + G  E  + + +EM  RG   D  +Y 
Sbjct: 424 M-EEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYN 482

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           +LI     +    +A + ++EML+KG+K   L YN         G       L ++M   
Sbjct: 483 ILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKE 542

Query: 603 GKFEVSNVLARWAETTKNRVY-----RKDRIE 629
           G         RWA      V      RK ++E
Sbjct: 543 G---------RWANVVTYNVLIQGYCRKGKLE 565



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 179/395 (45%), Gaps = 47/395 (11%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKGL---LSMETF 282
             R+F W+  +    ++      ++++L  A+ +  + S+L+    GE      L   + 
Sbjct: 90  VLRYFNWSRRELNVNYSIELICRLLNLLANAKHYPKIRSILDSFVKGETNCSISLIFHSL 149

Query: 283 KIAMNAFAAAK-----------ERKKAVAIFELMNK---YKFKAGVDTINCLLENLGRSK 328
            +    F A             E  K V   E   +   Y++K  V + N LL  L +  
Sbjct: 150 SVCSGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKEN 209

Query: 329 LPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
                + ++ + ++ + +PNL T+  ++ G C+V  L +AG V ++M   GF P+VV +N
Sbjct: 210 EFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYN 269

Query: 388 IMLEGLLKIGK-----RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
            +++G  K+G+     ++DAI L E+++ K  SPN  ++ ++I  FCK            
Sbjct: 270 TLIDGYCKMGRVGKMYKADAI-LKEMVENK-VSPNSVTFNVLIDGFCKDENLSAALKVFE 327

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                        Y  L+ G  N  +++    LL EM      P+ +TYNALI     +K
Sbjct: 328 EMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKK 387

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           + +EA  ++  + + G  P + T+N ++  Y + G  E    +   M+ +G  P+ ++Y 
Sbjct: 388 LLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYN 447

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            LI G   + +  E    L EM  +G+KA  + YN
Sbjct: 448 CLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYN 482



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 21/168 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           GF  N+ TYN ++    R  + E + ++L EM  +G+ +   T+ I ++A+   KE KKA
Sbjct: 438 GFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKA 497

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             + + M     K    T N LL         + A  L  ++ K     N+ TY VL+ G
Sbjct: 498 ARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQG 557

Query: 358 WCR----------VKNLMEAGRVWN---------EMIDKGFKPDVVAH 386
           +CR          +  ++E G + N         EM++KGF PD+  H
Sbjct: 558 YCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIEGH 605


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 184/377 (48%), Gaps = 17/377 (4%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAM 286
           A++FF       G   +  TY +++ +L +AR+ +  V + EE+   + +  +  +   +
Sbjct: 292 AWKFF-HEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMI 350

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
             + +A +  +A ++ E   +      V   NC+L  LGR    +EA  + D+++    P
Sbjct: 351 MGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAP 410

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NLTTY +L+   C+   L  A +V + M + G  P+++  NIM++ L K  K  +A  +F
Sbjct: 411 NLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIF 470

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             +  K  SP+ R+       FC         LI G G R R+D  Y L ++M +    P
Sbjct: 471 LGLDHKVCSPDSRT-------FCS--------LIDGLGRRGRVDDAYSLYEKMLDSDQIP 515

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + + Y +LI+        ++  +IYKEMV  G  P +   N  M   F+ G  E GR ++
Sbjct: 516 NVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALF 575

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +E+  +G  PD  SY++LI GL+    S E YK   EM E+G+   VL YN       ++
Sbjct: 576 EEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKS 635

Query: 587 GRSYVLDELAQKMRFSG 603
           G+     +L ++M+  G
Sbjct: 636 GKVDKAYQLLEEMKTKG 652



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 187/433 (43%), Gaps = 59/433 (13%)

Query: 213 LVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           ++V V++R +     AF++F W   K   AH    YN+ + ++ R R  + +  +LEEM 
Sbjct: 102 VIVGVMKRLKDVN-VAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMS 160

Query: 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
             G  LS       + +F  + + K+A  + E+M K+KF+        L+  L  +  P 
Sbjct: 161 VAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPD 220

Query: 332 EAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
               LF +++   +  N+  +T L+  + R   +  A  + +EM    F  D+V +N+ +
Sbjct: 221 PMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCI 280

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAV------------ 435
           +   K+GK   A K F  MKA+G  P+  +YT +I   CK    + AV            
Sbjct: 281 DCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSV 340

Query: 436 -----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                Y  +I G+G+  + D  Y LL+  + +GC P  + YN ++  +  +   +EA+RI
Sbjct: 341 PCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRI 400

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG----------------- 533
           + EM R    P + TYN+++    + G  E   KV D M   G                 
Sbjct: 401 HDEM-RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCK 459

Query: 534 ------------------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
                             C PD  ++  LI GL  + R  +AY   E+ML+      V+ 
Sbjct: 460 AQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVV 519

Query: 576 YNKFAADLSRAGR 588
           Y     +  + GR
Sbjct: 520 YTSLIQNFFKCGR 532



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 170/368 (46%), Gaps = 22/368 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           +SRT+ S++  LGR  + +   S+ E+M +   + ++  +   +  F     ++    I+
Sbjct: 481 DSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIY 540

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M        +  +N  ++ + ++   ++ + LF+++K +   P++ +Y++L+ G  + 
Sbjct: 541 KEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKA 600

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               E  +++ EM ++G   DV+A+N +++G  K GK   A +L E MK KG  P V +Y
Sbjct: 601 GFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTY 660

Query: 422 ---------------TIMIWKFCKQ-----NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
                            M+++  K      N  +Y+ LI GFG   R+D  Y +L+E+ +
Sbjct: 661 GSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQ 720

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           +G  P+  T+N L+  +   +  DEA   ++ M      P   TY++++        +  
Sbjct: 721 KGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNK 780

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
               W EM ++G  P++ +YT +I GL       EA    +     G       YN    
Sbjct: 781 AFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIE 840

Query: 582 DLSRAGRS 589
            LS A ++
Sbjct: 841 GLSSANKA 848



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 17/315 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + R+Y+ ++  L +A        +  EM E+GL L +  +   ++ F  + +  KA
Sbjct: 582 GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             + E M     +  V T   +++ L +     EA +LF++ K      N+  Y+ L+ G
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDG 701

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +V  + EA  +  E++ KG  P+    N +L+ L+K  +  +A   F+ MK    SPN
Sbjct: 702 FGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPN 761

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y+IMI   C                 R+ +  +   +EM+++G  P+ +TY  +I  
Sbjct: 762 AMTYSIMINGLCMI---------------RKFNKAFVFWQEMQKQGLKPNNITYTTMIAG 806

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       EA  ++     SG  P    YN +++             V++E   +GC  +
Sbjct: 807 LAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVN 866

Query: 538 DNSYTVLIGGLISQD 552
             +  VL+  L   D
Sbjct: 867 SKTCVVLLDALHKAD 881


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 182/350 (52%), Gaps = 20/350 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           +S T +S++  L +A + ++ +S+LE M ++G    M T  + +N    A + ++A    
Sbjct: 373 SSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFL 432

Query: 303 ELMNK--YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGW 358
           + M++      +   + N LL +L ++K   +A  +F  +  +  F P++ +Y++L+ G+
Sbjct: 433 QGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGF 492

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C++  L  A +++ +MID    P+V  +N  L GL++ G+ +DA  ++E M A G SP+V
Sbjct: 493 CKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDV 552

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y+                LI GF   R+ D  ++L + M  RGC P+ +TYN L+  +
Sbjct: 553 ITYST---------------LIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGL 597

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             +  PDEA  ++++MV  G  P   TY  ++  +   G  E   +V+DEM+ +G  PD 
Sbjct: 598 CKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 657

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +Y  L+ G     + GEA +  + M+ +  K   + +N     LS+A R
Sbjct: 658 VAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKR 707



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 18/272 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+ ++ L R  +      + EEM   G    + T+   ++ F+ A++  +A  +F
Sbjct: 516 NVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELF 575

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E M     +    T NCLL  L +   P EA  LF K+  R   P+  TYT LL G+C V
Sbjct: 576 ETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNV 635

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  V++EM+ KG  PDVVA+N +L+G  + GK  +A +LF+VM ++   P+  S+
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSH 695

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKI 480
            IMI                G    +R+D   ++ + ME+  GC PD +TYN+LI  +  
Sbjct: 696 NIMI---------------DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCG 740

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           ++   EA++++KE+ R    P  H +N+++++
Sbjct: 741 EQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 772



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 155/337 (45%), Gaps = 28/337 (8%)

Query: 248 YNSMMSILGRARQFETMVSMLEEM-GEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           YNS+++ L +A++     ++   M  E+  +  + ++ I ++ F    E  +A  +++ M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
                   V T N  L  L R     +AQ +++++     +P++ TY+ L+ G+   +  
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  ++  MI +G +P+ V +N +L GL K  K  +A +LF  M  +G  P+  +YT +
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 425 IWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           ++ FC                      +   Y CL+ GF    +      L + M  R C
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGR 523
            PD +++N +I  +   K  D+AV +++ M +  G  P + TYN ++             
Sbjct: 689 KPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 748

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           KV+ E+ R    PD +++ VL+  +    + G  Y++
Sbjct: 749 KVFKEIDRLKLSPDPHAFNVLLEAI----KCGIVYQF 781



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 133/325 (40%), Gaps = 58/325 (17%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
           +A+  F  +    FK  V T NCLL+ L R +  K+A  +F+K+      PN  TY VL+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--------------- 400
              C  +N  EA R + EM+DKGFKP    +  + E L   GK                 
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 401 --------------------DAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
                               +A KLF  M   G  P+   Y+ M+   CK          
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 431 -----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   +T  ++G     +++  ++  + M+E         Y+ LI+L+ 
Sbjct: 292 FLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLI 350

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                D+A     E+     +P+  T + +++   + G  +    + + MI+RG CPD  
Sbjct: 351 ESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMA 410

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEM 564
           ++++LI  L   D+  EA ++L+ M
Sbjct: 411 THSMLINELCKADKIQEAQEFLQGM 435



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 24/272 (8%)

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--GFKPDVVAHNIMLEG 392
           LL   +K  + P++ T+++L+   C+   + EA      M  K         ++N +L  
Sbjct: 396 LLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNS 455

Query: 393 LLKIGKRSDAIKLFEVMKA-KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           L K  K   A  +F  M + +   P+V SY+I+I  FCK         I   G   +   
Sbjct: 456 LCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCK---------IDELGRAEK--- 503

Query: 452 VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              L K+M +  C P+  TYNA +  LM+  ++ D A  +Y+EMV +G  P + TY+ ++
Sbjct: 504 ---LYKQMIDLNCVPNVTTYNAFLNGLMRKGRIAD-AQGVYEEMVAAGCSPDVITYSTLI 559

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             +     ++   ++++ MI RGC P+  +Y  L+ GL  + +  EA++   +M+E+G  
Sbjct: 560 HGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 619

Query: 571 APVLDYNKFAADLSRAGR----SYVLDELAQK 598
              + Y          G+      V DE+  K
Sbjct: 620 PDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSK 651



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           K +   Y CL+      R +     + ++M  +G  P+G TY  L++    ++  DEAVR
Sbjct: 126 KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVR 185

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            + EMV  GFKP+   Y  + +    TG      +V+   + +    +      L+   +
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFV 245

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            QD++ EA K    M++ G K     Y+
Sbjct: 246 IQDKAIEASKLFRAMVKSGCKPDATIYS 273



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 51/103 (49%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+  ++ +    FK  + TYN ++    +  + +   +V+++M+ +G  P+  +Y VL+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
                +  S EA ++  EM++KG K     Y K    L   G+
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGK 214


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 186/381 (48%), Gaps = 33/381 (8%)

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SME 280
           +H  + A     ++   P    + ++YN ++ I+ +  QF+    ++ EM +  L  +  
Sbjct: 72  KHHSKIALSLHNFSKSLPNPPLSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPT 131

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
           TF I +    +A   ++AV  F  +  Y   K   D    LL+ L +    K A  LF++
Sbjct: 132 TFFILIKRLISANLTRQAVRAFNEIESYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNR 191

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG-- 397
             +RF  ++  YTVL+ GWC++     A    NEM  KG +P+VV +N++L G+ +    
Sbjct: 192 NSNRFVADVKMYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASL 251

Query: 398 ------KRS--DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
                 +R+  DA K+F+ M+  G  P+V S++I++  + +                   
Sbjct: 252 HPEERFERTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGI 311

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N   YT +I    +  R++   DL+ EM   G  P   TYN   K  + +K  D+A++
Sbjct: 312 CPNVVTYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALK 371

Query: 490 IYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +K+M   G  +PT HTY +++  + +     + +++W++M+  G  PD +SYTVLI GL
Sbjct: 372 FFKKMKEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGL 431

Query: 549 ISQDRSGEAYKYLEEMLEKGM 569
               +  EA +Y  EM+EKG 
Sbjct: 432 CESKKWREACQYFVEMIEKGF 452



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 21/229 (9%)

Query: 196 RNMEAVLDE---CGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK------PGFAHNSR 246
           R+ E V DE    GI         VL  +  A +P         DK       G   N  
Sbjct: 262 RDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVL-----DKLGLMKEKGICPNVV 316

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TY S++  L    + E    +++EM   G+     T+      +   K+  KA+  F+ M
Sbjct: 317 TYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKM 376

Query: 306 NKYKF-KAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKN 363
            +    +    T   L+    ++ +    + ++ D ++    P+L +YTVL+ G C  K 
Sbjct: 377 KEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKK 436

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
             EA + + EMI+KGF P  V    +  GL++    SD ++ +  +K +
Sbjct: 437 WREACQYFVEMIEKGFLPQKVTFETLYRGLIQ----SDMLRTWRRLKKR 481



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 2/166 (1%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM- 494
           Y  LI       + D+   L+ EM++   PP   T+  LIK +    +  +AVR + E+ 
Sbjct: 98  YNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTFFILIKRLISANLTRQAVRAFNEIE 157

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             +  K T   +  ++ +  + G  +   ++++    R    D   YTVLI G     R 
Sbjct: 158 SYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNRNSNRFVA-DVKMYTVLIYGWCKIGRF 216

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             A  +L EM  KG++  V+ YN     + R    +  +   + +R
Sbjct: 217 KTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIR 262


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 210/445 (47%), Gaps = 26/445 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++  +C++I    S    +E VL +  I +S   V D L+        A +FF W+G + 
Sbjct: 58  KVRLLCEIIANTPS--STVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQL 115

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
              H+  ++N ++ +LG+   F+ M   ++ M ++GLLS+ TF    +++  A   ++A+
Sbjct: 116 NDNHSPYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASIFSSYVIADRVREAI 175

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
             F++M +Y     +  +N LL  + R     +A      ++    P+  TY +LL GW 
Sbjct: 176 MTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWE 235

Query: 360 RVKNLMEAGRVWNEMI-DKGFKP-DVVAHNIMLEGLLK-IGKRSDAIKLFEVMKAKGPSP 416
              N   A + ++EM+ D G+ P +V A++  L  LL     R +A+K FE+M+ +  SP
Sbjct: 236 SEGNCGAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGRREAMKFFEIMRDRQCSP 295

Query: 417 NVRSYTI---------------MIWK------FCKQNAAVYTCLITGFGNRRRMDIVYDL 455
            +R Y I               ++W+       C+ +  +Y  +I    +   + +   +
Sbjct: 296 GMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGM 355

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM   G  PD  TYN L + +  ++  +EA  I+ EMV++   P +   N  ++ Y  
Sbjct: 356 LDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLD 415

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G+     KVW  +I       + +  +L+ GL   DR  EA KY ++M+ +G+K     
Sbjct: 416 LGDVYKAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSST 475

Query: 576 YNKFAADLSRAGRSYVLDELAQKMR 600
            +K    L   G+  V DEL +K +
Sbjct: 476 LSKLKHALVEVGKGPVYDELLRKWK 500


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 205/435 (47%), Gaps = 34/435 (7%)

Query: 169 SVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA 228
           S+   S  D  + E + K++ +  +     E+ L   GI L+  L+   L R ++  + A
Sbjct: 25  SLPPPSPRDESDAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRLKNHSKIA 84

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM--ETFKIAM 286
              F +A   P    +  ++  ++  + + RQF+    ++ EM ++  L+    TF   +
Sbjct: 85  LSLFHYAKTLPNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLI 144

Query: 287 NAFAAAKERKKAVAIFELMNKY-KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
                A   ++AV  F  ++ + + K        LL+ L +    + A  +F+K KH F 
Sbjct: 145 RRLICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFNKNKHTFP 204

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL-----LKIGKR- 399
           P +  YTVL+ GWC++  +  A    NEMIDKG +P+VV +N++L G+     L   +R 
Sbjct: 205 PTVKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERF 264

Query: 400 ----SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAV 435
                +A ++F+ M+  G  P+V S++I++  + +                     N  +
Sbjct: 265 ERTIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVM 324

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           YT +I    +   ++    LL EM   G  P   TYN   K  + +K  + A+R++K M 
Sbjct: 325 YTSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMK 384

Query: 496 RSGF-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             G   P+ HTY ++++ + +    ++ +++W +M   G  PD + YTVLI GL  + R 
Sbjct: 385 EDGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRW 444

Query: 555 GEAYKYLEEMLEKGM 569
            EA  Y  EM+E G 
Sbjct: 445 REACHYFVEMIENGF 459



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 29/251 (11%)

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN--IMLEGLLKIGK 398
           +H  TP  +T+  L+          +A R +++ ID   +      +  ++L+ L K G 
Sbjct: 130 RHHLTPTPSTFLTLIRRLICAGLTRQAVRAFHD-IDAFSETKTTPQDFCVLLDTLCKYGH 188

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A+++F   K   P P V+ YT++I+ +CK                 R+      L E
Sbjct: 189 VRLAVEVFNKNKHTFP-PTVKMYTVLIYGWCKIG---------------RIKTAQSFLNE 232

Query: 459 MEERGCPPDGLTYNALIKLM--KIQKMPDE--------AVRIYKEMVRSGFKPTIHTYNM 508
           M ++G  P+ +TYN L+  +  K+   P+E        A  ++ +M  SG +P + ++++
Sbjct: 233 MIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERTIRNAEEVFDQMRESGIEPDVTSFSI 292

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++  Y +    ++       M  +G CP+   YT +I  L S     +A + L EM+  G
Sbjct: 293 LLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYTSVIKCLASCGWLEDAERLLGEMVRDG 352

Query: 569 MKAPVLDYNKF 579
           +      YN F
Sbjct: 353 VSPCAATYNCF 363


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 193/416 (46%), Gaps = 23/416 (5%)

Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
           D R +  +C+V+ +     +++ A L              VL R RH   P+ RFF +AG
Sbjct: 54  DARLVGSLCRVLSDFRGRGQDLPAALRGFAPGFQPRDAAAVLRRCRHLPLPSLRFFLFAG 113

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           + PGF+H+  +   + + L  AR F  + S+L ++    L S   F +   A++ A+  +
Sbjct: 114 ELPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSAL-SRGLFPLLFRAYSRARLPE 172

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A+  F  M  + F   +   + LL  L R+ L +  +  F +   +F  +   YT+L+ 
Sbjct: 173 DAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESTAQFDVSAKAYTILIS 232

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPS 415
           GW  VK    A  +++EM+ +G + DV  +N +++ L + G  + A  +L  + K+ G  
Sbjct: 233 GWAVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLV 292

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PN  +Y   +   C                      N   Y  +I    +   ++  Y++
Sbjct: 293 PNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNI 352

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L E+  +G  PD  +YN L+      K  ++A+R+   M +    P  H+YNM++K    
Sbjct: 353 LDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIS 412

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMK 570
            G ++   +VWD M +RG  P   +Y V+I GL S+  R+ +A  Y   M+++G+ 
Sbjct: 413 VGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGIP 468


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 182/405 (44%), Gaps = 51/405 (12%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           FF WA +   F H+   Y  M+ + G+ RQF+    +++ M  + + + +ETF I +  +
Sbjct: 132 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRY 191

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
             A    +AV  F  M  Y  K      + ++ +L + +   EAQ  FD LK RF P++ 
Sbjct: 192 VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVV 251

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            YT L+ GWCR  N+ EA RV+ EM   G +P+V  ++I+++ L + G+ + A  +F  M
Sbjct: 252 VYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEM 311

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              G               C  NA  +  L+       R + V  +  +M+  GCPPD +
Sbjct: 312 IDVG---------------CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAI 356

Query: 470 TYNALI-------------KLMK-------------------IQKMPD--EAVRIYKEMV 495
           TYN LI             K++                    I K+ D   A R++ +M 
Sbjct: 357 TYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK 416

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
               +P   TYN++M+ +    + +M  K+  EM      P+ N+Y VLI          
Sbjct: 417 DLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWN 476

Query: 556 EAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
            AY + +EM+E+    P L  Y      L +AG+    +EL +KM
Sbjct: 477 NAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 521



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 18/226 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G  P+     I L G  K+ +   A +L ++MK +     V ++TI++ ++ K   A   
Sbjct: 143 GHSPEPYMEMIDLAG--KVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEA 200

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
             +  F NR            ME+ GC PD + ++ +I  +  ++   EA   +  + + 
Sbjct: 201 --VHAF-NR------------MEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KD 244

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            F+P +  Y  ++  + + GN     +V+ EM   G  P+  +Y+++I  L    +   A
Sbjct: 245 RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRA 304

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +    EM++ G     + +N       +AGR+  + ++  +M+  G
Sbjct: 305 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG 350



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 17/262 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY+ ++  L R+ Q      +  EM + G   +  TF   M     A   +K 
Sbjct: 280 GIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKV 339

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + ++  M +        T N L+E+  R    +EA  + + +K     N +++  + G  
Sbjct: 340 LQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCI 399

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            ++ ++  A R++ +M D   +P+ V +NI++            +KL + M      PN 
Sbjct: 400 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 459

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKL 477
            +Y ++I  FC            G G+    +  Y   KEM E  C  P    Y  +++ 
Sbjct: 460 NTYRVLISTFC------------GIGH---WNNAYSFFKEMIEEKCLRPSLPVYEMVLQQ 504

Query: 478 MKIQKMPDEAVRIYKEMVRSGF 499
           ++      +   + ++MV  GF
Sbjct: 505 LRKAGQLKKHEELVEKMVNRGF 526


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 194/414 (46%), Gaps = 23/414 (5%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           R +  +C+V+ +      ++ A L      L+      VL R RH   P+ RFF +AG+ 
Sbjct: 63  RVVGSLCRVLSDFRGPRHDLPAALRGFAPWLTPGDAAAVLRRCRHLPLPSLRFFLFAGEL 122

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           PGF+H+  +   + + L  AR F  + S+L ++    L S   F +   A++ A+  + A
Sbjct: 123 PGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSAL-SRGLFPLLFRAYSRARLPEDA 181

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M  + F   +   + LL  L R+ L +  +  F +   +F  +   YT+L+ GW
Sbjct: 182 IRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESSAQFDVSAKAYTILISGW 241

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPSPN 417
             VK    A  +++EM+++G + DV  +N +++ L + G  + A  +L  + K+ G  PN
Sbjct: 242 AVVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPN 301

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y   +   C                      N   Y  +I    +   ++  Y++L 
Sbjct: 302 AATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILD 361

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+  +G  PD  +YN L+      K  ++A+R+   M +    P  H+YNM++K     G
Sbjct: 362 EITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIGVG 421

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEMLEKGMK 570
            ++   +VWD M +RG  P   +Y V+I GL S+  R+ +A  Y   M+++G+ 
Sbjct: 422 RFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGIP 475


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 210/445 (47%), Gaps = 26/445 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++  +C++I    S    +E VL +  I +S   V D L+        A +FF W+G + 
Sbjct: 62  KVRLLCEIIANTPS--STVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQL 119

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
              H+  ++N ++ +LG+   F+ M   ++ M ++GLLS+ TF    +++  A   ++A+
Sbjct: 120 NDNHSPYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASIFSSYVIADRVREAI 179

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
             F++M +Y     +  +N LL  + R     +A      ++    P+  TY +LL GW 
Sbjct: 180 MTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWE 239

Query: 360 RVKNLMEAGRVWNEMI-DKGFKP-DVVAHNIMLEGLLK-IGKRSDAIKLFEVMKAKGPSP 416
              N   A + ++EM+ D G+ P +V A++  L  LL     R +A+K FE+M+ +  SP
Sbjct: 240 SEGNCGAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGRREAMKFFEIMRDRQCSP 299

Query: 417 NVRSYTI---------------MIWK------FCKQNAAVYTCLITGFGNRRRMDIVYDL 455
            +R Y I               ++W+       C+ +  +Y  +I    +   + +   +
Sbjct: 300 GMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGM 359

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM   G  PD  TYN L + +  ++  +EA  I+ EMV++   P +   N  ++ Y  
Sbjct: 360 LDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLD 419

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G+     KVW  +I       + +  +L+ GL   DR  EA KY ++M+ +G+K     
Sbjct: 420 LGDVYKAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSST 479

Query: 576 YNKFAADLSRAGRSYVLDELAQKMR 600
            +K    L   G+  V DEL +K +
Sbjct: 480 LSKLKHALVEVGKGPVYDELLRKWK 504


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 180/391 (46%), Gaps = 22/391 (5%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           FF WA ++ GF  +   YN M+   G+   F+     ++ M  + + +++ETF I M  +
Sbjct: 80  FFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRY 139

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
             A    +A+  F  M  Y  K      + L+  L R +   +AQ  FD LK +F P++ 
Sbjct: 140 VRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDKFEPDVI 199

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            YT L+ GWCR  N+ EA RV+ EM   G KP+V  ++I+++ L + G+ + A  +F  M
Sbjct: 200 VYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEM 259

Query: 410 KAKGPSPN--------------------VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
              G  PN                    ++ Y  M    C+ +   Y  LI        +
Sbjct: 260 LDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENL 319

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           +    ++  M ++GC P+  T+N L   +      + A R+YK+M     +    TYN +
Sbjct: 320 EDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTL 379

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML-EKG 568
           MK +  + + +M  K+  EM      P+ N+Y VLI           AYK+  EM+ EK 
Sbjct: 380 MKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKC 439

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           ++  +  Y+     L +AG+    +EL +KM
Sbjct: 440 LRPSLPVYDMVLQQLRKAGQLKKHEELVEKM 470



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 17/296 (5%)

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           N+  F+   +  N +++  G+  +   A    D +K R     + T+ +L+  + R    
Sbjct: 86  NQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLA 145

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA   +N M D   KPD +A +I++  L +  + S A + F+ +K K   P+V  YT +
Sbjct: 146 AEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDKF-EPDVIVYTNL 204

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +  +C+             GN    + V+    EM+  G  P+  TY+ +I  +      
Sbjct: 205 VRGWCRA------------GNISEAERVFG---EMKVAGIKPNVYTYSIVIDSLCRCGQI 249

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             A  I+ EM+ +G +P   TYN +M+ + + G  E   +V+++M R GC PD  +Y  L
Sbjct: 250 TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFL 309

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           I      +   +A K +  M +KG       +N     +++ G       + +KM+
Sbjct: 310 IETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMK 365



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           GF+    A+N M++   ++     A    ++MKA+     V ++ I++ ++ +   A   
Sbjct: 89  GFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEA 148

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
             I  F NR            ME+  C PD + ++ LI ++  ++   +A   +  + + 
Sbjct: 149 --IHAF-NR------------MEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL-KD 192

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            F+P +  Y  +++ + + GN     +V+ EM   G  P+  +Y+++I  L    +   A
Sbjct: 193 KFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRA 252

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +    EML+ G +   + YN       +AGR+  + ++  +M+  G
Sbjct: 253 HDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLG 298


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 18/362 (4%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A RFF WA  + GF HN  TYN +   L RAR+ +    +L+     G+  ++ T+ + +
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                + +  KA  + E M +          N ++  L +++   +A   F  ++     
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECE--K 124

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ T+T+++ G C+   L EA   + +M  KG  P+   +N+++ G  K+ K   A  L 
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + MK  G +PNV +Y+ +I  FC+Q                ++D  Y L ++M E GC P
Sbjct: 185 KEMKESGLAPNVVTYSTVIHGFCRQT---------------KVDTAYKLFRQMVENGCMP 229

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TYN L+  +    + DEA  +  EM   G +P   +Y+ +M    +TG  +M  KV+
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 289

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           ++     C PD  +Y+ LI GL    R  EA K  E+M E   +  V+ +      L + 
Sbjct: 290 EDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKG 349

Query: 587 GR 588
            R
Sbjct: 350 DR 351



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 182/405 (44%), Gaps = 57/405 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---------------------LS 278
           G   N  TYN+++S L R    +    +L+EM E+GL                     ++
Sbjct: 226 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 285

Query: 279 METFK-----------IAMNAFAA----AKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           ++ F+           +A +   A    A    +A  +FE M +   +  V T   L++ 
Sbjct: 286 LKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDG 345

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +    +EAQ + + ++ R  TPN+ TY+ L+ G C+   + +A  V+  MI +G +P+
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI----------------- 425
           VV +N ++ G         A+ L E M A G  P++ +Y  +I                 
Sbjct: 406 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 465

Query: 426 ---WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
               KFC  +   Y+CLI GF    R+D+   L  +M ++   PD +T++ L++      
Sbjct: 466 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 525

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           + D+A R+ +EMV S   P ++TY  ++  + + G     R+V   M +RGC P+  +YT
Sbjct: 526 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 585

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            LI       +   AY+ LEEM+  G++  V+ Y          G
Sbjct: 586 ALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTG 630



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 161/328 (49%), Gaps = 18/328 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY+S++  L +  Q      + + M  +G+  ++ T+   ++ F        A+ + 
Sbjct: 370 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLM 429

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRV 361
           E M        + T N L++ L ++    EA  LF  +K +F  P++ TY+ L+GG+C++
Sbjct: 430 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 489

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + +  A  ++++M+ +   PDVV  + ++EG    G   DA +L E M A   SP+V +Y
Sbjct: 490 ERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTY 549

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           T ++  FCK                 RM     +LK M +RGC P+ +TY ALI      
Sbjct: 550 TSLVDGFCKVG---------------RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 594

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNS 540
             P  A R+ +EMV +G +P + TY  ++  +  TG+ E  RK+ + + R   C  D  +
Sbjct: 595 GKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFA 654

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           Y V++ GL    R   A + LE + + G
Sbjct: 655 YRVMMDGLCRTGRMSAALELLEAIKQSG 682



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 144/312 (46%), Gaps = 24/312 (7%)

Query: 310 FKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
           F   V T N L E L R++ + +   +L +      TPN+ TY V++ G C+  +L +A 
Sbjct: 20  FDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKAC 79

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
            +  EM + G  PD   +N ++  L K    + A+  F  M+ +    NV ++TIMI   
Sbjct: 80  ELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECE---KNVITWTIMIDGL 136

Query: 429 CKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           CK N                       Y  LI GF    ++   Y LLKEM+E G  P+ 
Sbjct: 137 CKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNV 196

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TY+ +I     Q   D A +++++MV +G  P + TYN ++    + G  +   ++ DE
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDE 256

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M  RG  PD  SY  L+ GL    +   A K  E+         V+ Y+   A L +AGR
Sbjct: 257 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR 316

Query: 589 SYVLDELAQKMR 600
                +L +KMR
Sbjct: 317 LDEACKLFEKMR 328



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 23/273 (8%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +  F   +    A  +F+ M K      V T + L+E    + L  +A+ L +++
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                +P++ TYT L+ G+C+V  ++EA RV   M  +G +P+VV +  +++   + GK 
Sbjct: 538 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKP 597

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFC---------------------KQNAAVYTC 438
           + A +L E M   G  PNV +Y  +I  FC                     K +   Y  
Sbjct: 598 TVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRV 657

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS- 497
           ++ G     RM    +LL+ +++ G PP    Y ALI+ +   K   +A+ + +EM  S 
Sbjct: 658 MMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSR 717

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
             +P    Y  +++   + G +E    + DE++
Sbjct: 718 KSRPNAEAYEAVIQELAREGRHEEANALADELL 750



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 120/284 (42%), Gaps = 24/284 (8%)

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           +  F  N+ TY  L     R + + E   +       G  P+V  + ++++GL K G   
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            A +L E M+  GP P+   Y  +I   CK                R      D  + ME
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKA---------------RNTAKALDYFRSME 121

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              C  + +T+  +I  L K  ++P EA   + +M + G  P   TYN+++  + +    
Sbjct: 122 ---CEKNVITWTIMIDGLCKANRLP-EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 177

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                +  EM   G  P+  +Y+ +I G   Q +   AYK   +M+E G    ++ YN  
Sbjct: 178 HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 237

Query: 580 AADLSRAG---RSY-VLDELAQKMRFSGKFEVSNVLARWAETTK 619
            + L R G    +Y +LDE+ ++     KF    ++A   +T K
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 189/400 (47%), Gaps = 36/400 (9%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHN---SRTYNSMMSILGRARQFE 262
           G++LS +L+V +L R R A + A      A   P F +    S  Y++++  LGRARQF+
Sbjct: 76  GVSLSGDLLVQILLRLRGASKLALSLLHAARLHPSFVNTQPRSDAYDAVVDALGRARQFD 135

Query: 263 TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AGVDTINCLL 321
               ++ +    G  S  TF +    + AA   ++A+  F+ M  +  +         LL
Sbjct: 136 AAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQAIRAFDDMEAFVSREPDAAEFATLL 195

Query: 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           + L + K PK A  +F+K K+++ PN   Y++L+ GWC+V     A +   +M+  G +P
Sbjct: 196 DTLCKYKYPKVATEVFNKRKYKYGPNEKMYSILIYGWCKVNRSDMAKKFLKDMLVHGIEP 255

Query: 382 DVVAHNIMLEGL-----LKIGKRSD-----AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           ++V +NI+L G+     L    R D     A  L + M+ +G  P+V SY+I++  + + 
Sbjct: 256 NIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGRGIEPDVTSYSIILHVYSRA 315

Query: 432 N--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +                     A YT +I    +  R++    LL EM   G  P   TY
Sbjct: 316 HKPELCLCMFRSMKERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPATY 375

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           N  +K  + +K    A+ +Y +M   G    P IHTYN+++  + +   +     +W +M
Sbjct: 376 NCFLKEYRGRKDVTAALELYNKMKAPGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDM 435

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                 PD +SYT+LI       +  EA ++  EM+EKG 
Sbjct: 436 CESTVGPDLDSYTLLIHCFCDSQKWREACQFFMEMIEKGF 475



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 31/309 (10%)

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           D  + +++ LGR++    A  +          +  T+ VL   +       +A R +++M
Sbjct: 119 DAYDAVVDALGRARQFDAAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQAIRAFDDM 178

Query: 375 IDKGF---KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
             + F   +PD      +L+ L K      A ++F   K K   PN + Y+I+I+ +CK 
Sbjct: 179 --EAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYKY-GPNEKMYSILIYGWCKV 235

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQ 481
           N               R D+    LK+M   G  P+ +TYN L+  +          +  
Sbjct: 236 N---------------RSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFD 280

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +    A  + KEM   G +P + +Y++I+  Y +    E+   ++  M  RG CP   +Y
Sbjct: 281 RTVHAAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVATY 340

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           T +I  L S  R  +    L+EM+ +G+      YN F  +           EL  KM+ 
Sbjct: 341 TSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKA 400

Query: 602 SGKFEVSNV 610
            G     ++
Sbjct: 401 PGSLTAPDI 409


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 188/395 (47%), Gaps = 23/395 (5%)

Query: 228 AFRFFCWAGDKPGFAHNS-RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIA 285
           +  FF WA  +  +   S   YN M+ + G+ RQF+    +++ M  + + +S+ETF I 
Sbjct: 133 SLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
           +  +  A    +AV  F  M  Y         + ++ NL R +   EAQ  FD LK RF 
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFE 252

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++  YT L+ GWCR   + EA +V+ +M   G +P+V  ++I+++ L + G+ S A  +
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDV 312

Query: 406 FEVMKAKGPSPN--------------------VRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           F  M   G +PN                    ++ Y  M    C+ +   Y  LI     
Sbjct: 313 FADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCR 372

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              ++    +L  M ++ C  +  T+N + + ++ ++  + A R+Y +M+ +  +P   T
Sbjct: 373 DENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVT 432

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN++M+ +  + + +M  K+  +M  +   P+ N+Y +L+           AYK  +EM+
Sbjct: 433 YNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMV 492

Query: 566 EKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
           E+    P L  Y    A L RAG+    +EL +KM
Sbjct: 493 EEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 102/218 (46%), Gaps = 16/218 (7%)

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N M++   K+ +   A  L ++MK++    ++ ++TI+I ++ +  A + +  +  F N
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVR--AGLASEAVHCF-N 210

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           R            ME+ GC PD + ++ +I  +  ++   EA   +  + +  F+P +  
Sbjct: 211 R------------MEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIV 257

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  +++ + + G      KV+ +M   G  P+  +Y+++I  L    +   A+    +ML
Sbjct: 258 YTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADML 317

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + G     + +N       +AGR   + ++  +M+  G
Sbjct: 318 DSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLG 355


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 179/347 (51%), Gaps = 20/347 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T +S++  L +A + ++ +S+LE M ++G    M T  + +N    A + ++A    + M
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110

Query: 306 NKY--KFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRV 361
           N+      +   + N LL +L ++K   +A  +F  +  +    P++ +Y++L+ G+C++
Sbjct: 111 NRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKI 170

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A +++ +MID    P+V  +N  L GL++ G+ +DA  ++E M + G SP+V +Y
Sbjct: 171 DELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITY 230

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           +                LI GF   R+ D  ++L + M  RGC P+ +TYN L+  +  +
Sbjct: 231 ST---------------LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKE 275

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
             PDEA  ++++MV  G  P   TY  ++  +   G  E   +V+DEM+ +G  PD  +Y
Sbjct: 276 SKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAY 335

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             L+ G     + GEA +  + M+ +  K   + +N     LS+A R
Sbjct: 336 NCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKR 382



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 147/278 (52%), Gaps = 18/278 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+ ++ L R  +      + EEM   G    + T+   ++ F+ A++  +A  +F
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E M     +    T NCLL  L +   P EA  LF K+  R   P+  TYT LL G+C V
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNV 310

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  V++EM+ KG  PDVVA+N +L+G  + GK  +A +LF+VM ++   P+  S+
Sbjct: 311 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSH 370

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKI 480
            IMI                G    +R+D   ++ + ME+  GC PD +TYN+LI  +  
Sbjct: 371 NIMI---------------DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCG 415

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++   EA++++KE+ R    P  H +N+++++ +  G+
Sbjct: 416 EQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAGH 453



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 154/331 (46%), Gaps = 24/331 (7%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLL-SMETFKIAMNAFAAAKERKKAV 299
           A +  +YNS+++ L +A++     ++   M  E+ ++  + ++ I ++ F    E  +A 
Sbjct: 118 ASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAE 177

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGW 358
            +++ M        V T N  L  L R     +AQ +++++     +P++ TY+ L+ G+
Sbjct: 178 KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGF 237

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
              +   +A  ++  MI +G +P+ V +N +L GL K  K  +A +LF  M  +G  P+ 
Sbjct: 238 SLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDK 297

Query: 419 RSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT +++ FC                      +   Y CL+ GF    +      L + 
Sbjct: 298 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQV 357

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTG 517
           M  R C PD +++N +I  +   K  D+AV +++ M +  G  P + TYN ++       
Sbjct: 358 MVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQ 417

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
                 KV+ E+ R    PD +++ VL+  +
Sbjct: 418 RLSEAMKVFKEIDRLKLSPDPHAFNVLLEAM 448



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 24/272 (8%)

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM--IDKGFKPDVVAHNIMLEG 392
           LL   +K  + P++ T+++L+   C+   + EA      M            ++N +L  
Sbjct: 71  LLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNS 130

Query: 393 LLKIGKRSDAIKLFEVMKA-KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           L K  K   A  +F  M + +   P+V SY+I+I  FCK         I   G   +   
Sbjct: 131 LCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCK---------IDELGRAEK--- 178

Query: 452 VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              L K+M +  C P+  TYNA +  LM+  ++ D A  +Y+EM+ +G  P + TY+ ++
Sbjct: 179 ---LYKQMIDLNCVPNVTTYNAFLNGLMRKGRIAD-AQGVYEEMISAGCSPDVITYSTLI 234

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             +     ++   ++++ MI RGC P+  +Y  L+ GL  + +  EA++   +M+E+G  
Sbjct: 235 HGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 294

Query: 571 APVLDYNKFAADLSRAGR----SYVLDELAQK 598
              + Y          G+      V DE+  K
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSK 326



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++       + E  V + +EM  KG    +  +   +  F  A +  +A  +F++M
Sbjct: 299 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVM 358

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK--HRFTPNLTTYTVLLGGWCRVKN 363
              + K    + N +++ L ++K   +A  +F++++  H  +P+L TY  L+ G C  + 
Sbjct: 359 VSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQR 418

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L EA +V+ E+      PD  A N++LE +   G +
Sbjct: 419 LSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAGHK 454



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA R  +E + S   P+  T + +++   + G  +    + + MI+RG CPD  ++++LI
Sbjct: 32  EACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLI 91

Query: 546 GGLISQDRSGEAYKYLEEM 564
             L   D+  EA ++L+ M
Sbjct: 92  NELCKADKIQEAQEFLQGM 110


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 189/410 (46%), Gaps = 22/410 (5%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           ++ +   LDE    LS  +V  VL+R       A  FF WA  + G+ H     N ++++
Sbjct: 77  EQALRVALDEYRGQLSPEIVGKVLQRLIDPG-AALVFFEWAETRDGYQHEIFCCNCLLNV 135

Query: 255 LGRARQFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
           L +A Q+     +      G+ G  ++ T+   ++ F  A +   A  +F+ MN+   KA
Sbjct: 136 LVKAHQYSQAHDLFRSRIEGQWGGDTV-TYSTLISGFIRAGKILPAYELFDEMNRKGLKA 194

Query: 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
                  +L  L  +    +A L F ++     P+  TY  ++ G  +   L +A R+  
Sbjct: 195 HAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLE 254

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM+D GF P+V ++N +L G  K  +  +A+ L E M  +G  P+V SYT +I   CK +
Sbjct: 255 EMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLD 314

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                C        R MD       +M +RGC P+ +TY  L+         D AV + +
Sbjct: 315 QVDEAC--------RVMD-------KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 359

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           +M   G++P   TYN IM  + +  + E   +V   MI+ GC PD  +Y+ +I G     
Sbjct: 360 KMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAG 419

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           +  EA+  LE+M+ +G +  V   +     L +A     +D   + +R S
Sbjct: 420 KLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAA---AIDSAQELLRMS 466



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 184/382 (48%), Gaps = 29/382 (7%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-S 278
           FC  GD            + G+  N+ TYN++M +  R    E    +L+ M + G    
Sbjct: 345 FCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPD 404

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLF 337
              +   ++ F  A + ++A  + E M +   +  V  ++ L++ L ++     AQ LL 
Sbjct: 405 AINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLR 464

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
             +     P++  Y++L+   C+ K L EA    + M+     PDVV +N +++GL K  
Sbjct: 465 MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSR 524

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +DA  LF+ M+A G  P+V +Y+I+I  FCK N                +D  + +L+
Sbjct: 525 RINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDN---------------NLDSAFKMLE 569

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M+E  C PD +TY+ALI  +      D+A  +++EM+  G  P + TYN ++    +  
Sbjct: 570 RMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKIN 629

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E   ++ + M ++ C PD  +YT LI GL +  R  EA++ L EM +KG     + Y 
Sbjct: 630 KVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYG 689

Query: 578 KFAADLSRAGRSYVLDELAQKM 599
                L +     ++++L ++M
Sbjct: 690 TLLRALQKTNNLELVEQLLKEM 711



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 211/458 (46%), Gaps = 28/458 (6%)

Query: 150  DNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL 209
            D++D  G+      +  +T+V+ +         ++ ++++  F+ +   E  L+     L
Sbjct: 755  DSKDQQGQFSPRPHQYRVTAVATQGGFH----HKIVRILNSRFAWEY-AETALERFTGKL 809

Query: 210  SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
            +  +V  VL+  R+    A  FF WA  + G+ H++ T N ++  L R ++ +     L+
Sbjct: 810  TTTVVGKVLQGVRNGD-AALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPK---DALQ 865

Query: 270  EMGEKGLLS--METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
                K   S  M TF I ++    A +   A  + + M ++     V   N +++ L  +
Sbjct: 866  VYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSA 925

Query: 328  KLPKEAQLLFDKLKHRFT--PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            +    A  LF +++   +  P++ TY+ ++    +   + +A R+  +M+ KG  P+VV 
Sbjct: 926  RKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVT 985

Query: 386  HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
            ++ +L GL K GK  +A  L + M   G SPN+ +Y  +I   CK               
Sbjct: 986  YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLG------------- 1032

Query: 446  RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              R+D  Y LL+EM + GC P+ +TY  L+         ++A+ + + MV  G+ P + T
Sbjct: 1033 --RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 1090

Query: 506  YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            YN ++  + +    E   ++   MI++GC P+  SY  +I GL    +  E    LE+ML
Sbjct: 1091 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML 1150

Query: 566  EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                   ++ +N     + +  R  +  EL   ++ SG
Sbjct: 1151 SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 1188



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 24/370 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA--MNAFAAAKERKK 297
            G   N   +N ++  L  AR+ ++ + + +EM E G    + F  +  +++   + +   
Sbjct: 907  GVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDD 966

Query: 298  AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
            A  + E M        V T + LL  L ++    EA  L  ++ +   +PN+ TY  ++ 
Sbjct: 967  ACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIID 1026

Query: 357  GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            G C++  + EA  +  EM+D G +P+VV + ++L+   K GK  DAI L EVM  KG  P
Sbjct: 1027 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP 1086

Query: 417  NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
            N+ +Y  ++  FCK+                    N   Y  +I G     ++     LL
Sbjct: 1087 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 1146

Query: 457  KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            ++M    C PD +T+N +I  M      D A  ++  +  SG  P + TYN ++    ++
Sbjct: 1147 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 1206

Query: 517  GNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
              ++    +  EM R+ GC PD  +Y  +I GL    R   AYK   +ML  G+    + 
Sbjct: 1207 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 1266

Query: 576  YNKFAADLSR 585
            Y+   + L +
Sbjct: 1267 YSIVISSLCK 1276



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 181/389 (46%), Gaps = 23/389 (5%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
            + G + N  TYN+++    +  + +    +LEEM + G   ++ T+ + ++AF    + +
Sbjct: 1011 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 1070

Query: 297  KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             A+ + E+M +  +   + T N LL+    + ++ +  QLL   ++    PN+ +Y  ++
Sbjct: 1071 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 1130

Query: 356  GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             G C+   + E   +  +M+     PD+V  N +++ + K  +   A +LF +++  G +
Sbjct: 1131 AGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCT 1190

Query: 416  PNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN+ +Y  ++   CK                      +   Y  +I G    +R+D  Y 
Sbjct: 1191 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 1250

Query: 455  LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
            L  +M   G  PD +TY+ +I  +   +  DEA  + + M+++GF P   TY  ++  + 
Sbjct: 1251 LFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 1310

Query: 515  QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
            +TGN +   ++   ++ +G  PD  ++++ I  L  + R  +A + LE ML  G+    +
Sbjct: 1311 KTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTV 1370

Query: 575  DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             YN        A  +    +L + MR  G
Sbjct: 1371 TYNTLLKGFCDASLTEDAVDLFEVMRQCG 1399



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 168/383 (43%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GFA N  +YN+++    +A + E  + +LE+M  +G    + ++   +N      +  +A
Sbjct: 260 GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEA 319

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M +   +  V T   L++   R      A  L  K+  R + PN  TY  ++  
Sbjct: 320 CRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHV 379

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  ++  A +V   MI  G  PD + ++ ++ G  K GK  +A  L E M  +G  P+
Sbjct: 380 FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPD 439

Query: 418 VRSYTIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIVYDLLK 457
           V   + +I   CK  A                      Y+ LI      +R+      L 
Sbjct: 440 VACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLD 499

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M +  C PD +TYN+++  +   +  ++A  ++  M  +G  P + TY++++ S+ +  
Sbjct: 500 VMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDN 559

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   K+ + M    C PD  +Y+ LI GL       +A+   +EML  G    ++ YN
Sbjct: 560 NLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYN 619

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                L +  +     E+ + MR
Sbjct: 620 TLIDGLCKINKVEQAAEMLEIMR 642



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 166/353 (47%), Gaps = 27/353 (7%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            G+  N  TYNS++ +  +  + E    +L  M +KG + ++ ++   +     A +  + 
Sbjct: 1083 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 1142

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            V + E M        + T N +++ + ++     A  LF+ ++    TPNL TY  L+ G
Sbjct: 1143 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 1202

Query: 358  WCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C+ +   +A  +  EM  K G  PD++ +N +++GL K  +   A KLF  M + G +P
Sbjct: 1203 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 1262

Query: 417  NVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
            +  +Y+I+I   CK                      A  Y  LI GF     +D   ++L
Sbjct: 1263 DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEIL 1322

Query: 457  KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            + +  +G  PD +T++  I  +  +    +A  + + M+R+G  P   TYN ++K +   
Sbjct: 1323 QLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDA 1382

Query: 517  GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
               E    +++ M + GC PD+ +YT L+G L+ +    ++YK L   + K M
Sbjct: 1383 SLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDK----KSYKDLLAEVSKSM 1431



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 128/276 (46%), Gaps = 18/276 (6%)

Query: 330 PKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           P  A + F+  + R  +   +     LL    +     +A  ++   I+  +  D V ++
Sbjct: 106 PGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYS 165

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            ++ G ++ GK   A +LF+ M  KG                K +A V+  ++ G  +  
Sbjct: 166 TLISGFIRAGKILPAYELFDEMNRKG---------------LKAHAGVHKSILRGLCDAG 210

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +        +EM  + CPPD +TYN +I  +      D+A+R+ +EMV +GF P + +YN
Sbjct: 211 QCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYN 269

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++  + +    E    + ++M+ RGC PD  SYT +I GL   D+  EA + +++M+++
Sbjct: 270 TVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 329

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G +  V+ Y        R G      EL +KM   G
Sbjct: 330 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 365



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 57/269 (21%)

Query: 249 NSMMSILGRARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           ++++  L +A   ++   +L   +G      +  + I ++A   AK   +A +  ++M K
Sbjct: 444 STLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVK 503

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLME 366
            +    V T N +++ L +S+   +A LLFD+++     P++ TY++++  +C+  NL  
Sbjct: 504 NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDS 563

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A ++   M +    PDVV ++ ++ GL K G    A  +F+ M   G +PN+ +Y  +I 
Sbjct: 564 AFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLID 623

Query: 427 KFCKQN--------------------AAVYTCLITGFGNRRRMD---------------- 450
             CK N                    +  YTCLI G  N  R++                
Sbjct: 624 GLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLP 683

Query: 451 -------------------IVYDLLKEME 460
                              +V  LLKEME
Sbjct: 684 DRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDK---PGFAHNSRTYNSMMSILGRARQFETMV 265
           +++N VVD L + R     AF  F    D+    G   +  TY+ ++    +    ++  
Sbjct: 511 VTYNSVVDGLCKSRRIN-DAFLLF----DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAF 565

Query: 266 SMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
            MLE M E K +  + T+   +N    A    KA  +F+ M        + T N L++ L
Sbjct: 566 KMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGL 625

Query: 325 GR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            + +K+ + A++L    K   TP+  TYT L+ G C    L EA RV  EM DKG  PD 
Sbjct: 626 CKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDR 685

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + +  +L  L K        +L + M+A
Sbjct: 686 MTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 47/328 (14%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERK 296
            K GF   + TY +++    +    +  + +L+ +  KG    + TF I ++  +     +
Sbjct: 1292 KNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLR 1351

Query: 297  KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
            +A  + E M +        T N LL+    + L ++A  LF+ ++     P+  TYT L+
Sbjct: 1352 QAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411

Query: 356  GGWCRVKNLMEA-GRVWNEMIDKGFK----------------PDVVAHNIMLEGLLKIGK 398
            G     K+  +    V   M+D GFK                 DV     +++   K G 
Sbjct: 1412 GHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGS 1471

Query: 399  RSDAIKLFEVMKAKGPSPNVRSYTIM--IWKFCKQ------------------NAAVYTC 438
              DA K+FE M  +    NV  ++ M  ++ F KQ                  +A  +  
Sbjct: 1472 PQDARKVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLS 1527

Query: 439  LITGFGNRRRMDIVYDLLKEME-ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+T   +   +D   D    +  + G  P    ++ +I L+    + +EA  +   M+  
Sbjct: 1528 LLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDL---MLGM 1584

Query: 498  GFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
              KP+  T+N ++ +Y   G++E   +V
Sbjct: 1585 PCKPSAATWNCLLSAYKICGDFERALRV 1612


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 176/386 (45%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+N ++  L RA Q    + M+EEMG  GL   E TF   M  F        A
Sbjct: 206 GIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGA 265

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I E M      +   T+N L+    +    +E     D++ +  F P+  T+  L+ G
Sbjct: 266 LRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNG 325

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR+ ++  A  + + M+ +GF PD+  +N ++ GL K+G+  +A+++   M  +  SPN
Sbjct: 326 LCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPN 385

Query: 418 VRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+N                       +  LI G        +  +L +
Sbjct: 386 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFE 445

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ +GC PD  TYN LI  +  +   +EA+ + KEM  SG    + TYN ++  + +  
Sbjct: 446 EMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNK 505

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E   +++DEM  +G   +  +Y  LI GL    R  EA + +++ML +G+K     YN
Sbjct: 506 RIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYN 565

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  RAG      ++ Q M  +G
Sbjct: 566 SLLTYFCRAGDIKKAADIVQTMTSNG 591



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 165/372 (44%), Gaps = 22/372 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ T N ++    +  + E ++S ++EM  +G      TF   +N        K A
Sbjct: 276 GCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHA 335

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I ++M +  F   + T N L+  L +    +EA  + +++  R F+PN  TY  L+  
Sbjct: 336 LEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLIST 395

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA  +   +  KG  PDV   N +++GL        A++LFE MK KG  P+
Sbjct: 396 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPD 455

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y ++I   C +                    N   Y  LI GF   +R++   ++  
Sbjct: 456 EFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFD 515

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EME +G   + +TYN LI  +   +  +EA ++  +M+  G KP   TYN ++  + + G
Sbjct: 516 EMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAG 575

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           + +    +   M   GC PD  +Y  LI GL    R   A + L  +  KGM      YN
Sbjct: 576 DIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYN 635

Query: 578 KFAADLSRAGRS 589
                L R  R+
Sbjct: 636 PVIKALFREKRT 647



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 189/443 (42%), Gaps = 88/443 (19%)

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAA 292
           WA  +P F  +S  Y  ++  LG+   F +M  +L+EM   G  +   TF I + ++A  
Sbjct: 94  WASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKF 153

Query: 293 KERKKAVAIFELM-----------------------NKYKF-------------KAGVDT 316
           +   +AVA+ ++M                       NK K              K  V T
Sbjct: 154 ELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTT 213

Query: 317 INCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYT----------------------- 352
            N L++ L R+   + A L+ +++  +  +P+  T+T                       
Sbjct: 214 FNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMV 273

Query: 353 ------------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
                       VL+ G+C+   + E     +EM ++GF+PD    N ++ GL +IG   
Sbjct: 274 AAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVK 333

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            A+++ +VM  +G  P++ +Y  +I+  CK                  ++   ++L +M 
Sbjct: 334 HALEILDVMLQEGFDPDIFTYNSLIFGLCKLG---------------EVEEAVEILNQMI 378

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            R   P+ +TYN LI  +  +   +EA  + + +   G  P + T+N +++    T N+ 
Sbjct: 379 LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHR 438

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           +  ++++EM  +GC PD+ +Y +LI  L S+ R  EA   L+EM   G    V+ YN   
Sbjct: 439 LAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLI 498

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               +  R    +E+  +M   G
Sbjct: 499 DGFCKNKRIEEAEEIFDEMELQG 521



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 170/373 (45%), Gaps = 18/373 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAV 299
           F+ N+ TYN+++S L +  Q E    +   +  KG+L  + TF   +         + A+
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 300 AIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            +FE M          T N L+++L  R +L +   LL +      + N+ TY  L+ G+
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ K + EA  +++EM  +G   +VV +N +++GL K  +  +A +L + M  +G  P+ 
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y  ++  FC+             G+ ++     D+++ M   GC PD +TY  LI  +
Sbjct: 562 FTYNSLLTYFCRA------------GDIKK---AADIVQTMTSNGCEPDSVTYGTLILGL 606

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                 + A R+ + +   G      TYN ++K+ F+        +++ EM+ +G  PD 
Sbjct: 607 SKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDA 666

Query: 539 NSYTVLIGGLISQDRS-GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            +Y V+  GL S     GEA  +L EM +KG       +   A  L        L +L  
Sbjct: 667 VTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVN 726

Query: 598 KMRFSGKFEVSNV 610
           ++     F  S V
Sbjct: 727 RVMKQANFSDSEV 739



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 107/272 (39%), Gaps = 51/272 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G + N  TYN++                                  ++ F   K  ++A 
Sbjct: 486 GCSRNVVTYNTL----------------------------------IDGFCKNKRIEEAE 511

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGW 358
            IF+ M        V T N L++ L +++  +EA  L D+ L     P+  TY  LL  +
Sbjct: 512 EIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYF 571

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR  ++ +A  +   M   G +PD V +  ++ GL K G+   A +L   ++ KG     
Sbjct: 572 CRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKG----- 626

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                M+          Y  +I      +R      L +EM E+G PPD +TY  + + +
Sbjct: 627 -----MVLA-----PQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL 676

Query: 479 KIQKMP-DEAVRIYKEMVRSGFKPTIHTYNMI 509
                P  EAV    EM   GF P   ++ M+
Sbjct: 677 CSGGGPIGEAVDFLVEMTDKGFLPDFSSFLML 708


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 178/369 (48%), Gaps = 17/369 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKER 295
           ++ G   N  TYN+++  L + R     +  L EM  +G+     T+   ++      + 
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQL 284

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVL 354
            +A  +F+ M +   K  V T N ++++L + +L  +A   L + +     P++ TYT +
Sbjct: 285 NEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTI 344

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G C +  L EA R++ +M  KG KPDVVA+N +++ L K    +DA++    M  +G 
Sbjct: 345 LHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI 404

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            PN               A  Y+ ++ GF N  ++D    L KEM  R   P+ LT++ L
Sbjct: 405 PPN---------------AVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSIL 449

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +  + M  EA  +++ M   G +P I+TYN +M  Y         RKV++ M+ +GC
Sbjct: 450 VDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGC 509

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD +SY +LI G  +  R  +A   L +M  K +    + YN     L   GR     E
Sbjct: 510 APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQE 569

Query: 595 LAQKMRFSG 603
           L +KM  SG
Sbjct: 570 LFKKMCSSG 578



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 181/377 (48%), Gaps = 24/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN ++  L + R        L EM ++G+   + T+   ++      +  +A+ +F+ M
Sbjct: 305 TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            +   K  V   N ++++L + +L  +A     ++  R   PN  TY+ +L G+C +  L
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT-- 422
            EA +++ EM+ +   P+ +  +I+++GL + G  S+A  +FE M  KG  PN+ +Y   
Sbjct: 425 DEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNAL 484

Query: 423 ------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                             IM+ K C  +   Y  LI G+ N RRMD    LL +M  +  
Sbjct: 485 MNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKL 544

Query: 465 PPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            P+ +TYN ++K L  + ++ D A  ++K+M  SG  PT+ TY++++    + G+ +   
Sbjct: 545 TPNTVTYNTIMKGLCYVGRLLD-AQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEAL 603

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K++  M  +   PD   YT+LI G+    +   A     ++   G++ P   YN     L
Sbjct: 604 KLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663

Query: 584 SRAGRSYVLDELAQKMR 600
            + G S    EL +K +
Sbjct: 664 LKEGLSDEAYELFRKWK 680



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 157/352 (44%), Gaps = 20/352 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +   +  + + +Q+ T+V +  +M   G+  ++ +  I +N          AV+++  M 
Sbjct: 96  FGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMF 155

Query: 307 KYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +  V T   L+  +    K+    +L  + ++    P++ +Y  L+ G C   N  
Sbjct: 156 KLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTN 215

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  V+ +M   G KP+VV +N +++ L K    +DA+     M  +G  P+  +Y  ++
Sbjct: 216 MAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIV 275

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C        CL        +++    L K ME+ GC PD +TYN +I  +   ++ +
Sbjct: 276 HGLC--------CL-------GQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVN 320

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A     EMV  G  P + TY  I+      G      +++ +M ++GC PD  +Y  +I
Sbjct: 321 DAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTII 380

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             L       +A ++L EM+++G+    + Y+         G+   LDE  Q
Sbjct: 381 DSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQ---LDEATQ 429



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 15/259 (5%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           T  + +  +L+   CR+ ++  A  VW +M   G +PDV+    ++ G+   GK   A++
Sbjct: 125 THTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVE 184

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L+  M   G  P+V SY                 LI G  N    ++   + K+ME+ GC
Sbjct: 185 LYNEMVRSGHEPDVISYNT---------------LINGLCNSGNTNMAVHVFKKMEQNGC 229

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+ +TYN +I  +   ++ ++A+    EMV  G  P   TYN I+      G      +
Sbjct: 230 KPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATR 289

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M + GC PD  +Y ++I  L       +A  +L EM+++G+   V+ Y      L 
Sbjct: 290 LFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLC 349

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G+      L +KM   G
Sbjct: 350 YLGQLNEAIRLFKKMEQKG 368



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 15/185 (8%)

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           DA+  F  M    P P++  +   +    K               ++   +VY L  +M+
Sbjct: 76  DALASFYRMARMNPRPSIVEFGKFLGSIAKM--------------KQYSTVVY-LCNQMD 120

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             G      + N LI  +      D AV ++ +M + G +P + T+  ++      G  +
Sbjct: 121 LFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIK 180

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           +  ++++EM+R G  PD  SY  LI GL +   +  A    ++M + G K  V+ YN   
Sbjct: 181 VAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTII 240

Query: 581 ADLSR 585
             L +
Sbjct: 241 DSLCK 245



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 477 LMKIQKMPDEAVRIY--KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           L  I KM   +  +Y   +M   G   T+++ N+++    +  + +    VW +M + G 
Sbjct: 100 LGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGI 159

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  ++T LI G+ ++ +   A +   EM+  G +  V+ YN     L  +G + +   
Sbjct: 160 QPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVH 219

Query: 595 LAQKMRFSG 603
           + +KM  +G
Sbjct: 220 VFKKMEQNG 228


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 187/398 (46%), Gaps = 22/398 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           +  FF WA    GF  +   YN M+ + G+ R F+    +++ M  +G+ +++ TF + +
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLV 185

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
             +  A    +AV  F  M  Y  K    + + ++ +L + +   EA+L FD LKH+F P
Sbjct: 186 RRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEP 245

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++  YT L+ GWCR  ++ +A  V+++M + G KP+V  ++I+++ L + G+ + A  +F
Sbjct: 246 DVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVF 305

Query: 407 EVMKAKGPSPN--------------------VRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
             M   G  PN                    ++ Y  M    C  +   Y  LI      
Sbjct: 306 SEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKD 365

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +D    +L  M ++G  P+  T+N++   +      + A R+Y +M      P   TY
Sbjct: 366 ENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTY 425

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N++M+ +  + + +M  K+  EM      P+ N+Y +LI     +     AY  ++EM+E
Sbjct: 426 NILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVE 485

Query: 567 KGMKAPVLDYNKFAADLSR-AGRSYVLDELAQKMRFSG 603
           +    P L   +   +L R AG+    +EL +KM   G
Sbjct: 486 EKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARG 523


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 206/448 (45%), Gaps = 36/448 (8%)

Query: 184 VCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFA 242
           +C ++ D    L  ++   LD  GI     L+  V + F  + +     F WA  KPGF 
Sbjct: 85  LCNILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQ 144

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKERKKA 298
            ++  +NSM++ LG+AR+F +   +L +   G +G  L+S +TF I +  +  A   + A
Sbjct: 145 SSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAA 204

Query: 299 VAIFELMNK----YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTY 351
           +  FE  +     +  +AG      LL++L +    + A   FD+   +   + P++  Y
Sbjct: 205 IRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIY 264

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            +LL GW R + L  A R+W EM  K  KP VV +  ++EG  ++ +   AI+L + MK 
Sbjct: 265 NILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKR 324

Query: 412 KGPSPNVRSYTIMI------------------WKFCKQNAAV--YTCLITGFGNRRRMDI 451
           +G   N   Y  +I                  +  C++   +  Y  L+ G+     +  
Sbjct: 325 EGIKSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVG 384

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              +LK M  R   P   TYN   +     +  +E + +Y +M+ SG+ P   TY++++K
Sbjct: 385 ASKILKMMISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLK 444

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              +    ++  ++  EM  RGC  D  + T+    L    R  EA+   E+ML +G+  
Sbjct: 445 MLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVP 504

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
             L +++   +  + G    L ELA+++
Sbjct: 505 QYLTFHRLNDEFRKQG----LTELARRL 528



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 140/331 (42%), Gaps = 30/331 (9%)

Query: 204 ECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET 263
           E G +L   +++D L +  H R     F       P +  + R YN +++   R+R+ + 
Sbjct: 221 EAGTSL-FEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKH 279

Query: 264 MVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
              +  EM +K +  S+ T+   +  ++  +  ++A+ + + M +   K+     N +++
Sbjct: 280 AERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIID 339

Query: 323 NLGRSKLPKEAQLLFDKLKHRFT----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
            L  +   KE   +   ++H F     P ++TY  L+ G+C+  +L+ A ++   MI + 
Sbjct: 340 ALAEAGRFKE---VLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMMISRE 396

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------- 431
             P    +N       K  K  + + L+  M   G +P+  +Y +++   C++       
Sbjct: 397 VFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAV 456

Query: 432 -------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                        + A  T         +R +  +   ++M  RG  P  LT++ L    
Sbjct: 457 QISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRLNDEF 516

Query: 479 KIQKMPDEAVRIYKEMVR-SGFKPTIHTYNM 508
           + Q + + A R+ K M   S  K   +TYN+
Sbjct: 517 RKQGLTELARRLCKLMSSVSHSKNLPNTYNV 547


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 201/420 (47%), Gaps = 26/420 (6%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKP-GFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           NLV  VL+R  +    A +FF +  +    + H++ +++  + I  R     T+ S++  
Sbjct: 55  NLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHIHPTVWSLIHR 114

Query: 271 MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M    +  S +TF I    +A++ +  KAV +F  M+++     + + N +L+ L +SK 
Sbjct: 115 MRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 174

Query: 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++A  LF  L+ RF+ +  TY V++ GWC +K   +A  V  EM+D+G  P++  +N M
Sbjct: 175 VEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTM 234

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L+G  + G+   A + F  MK +                C+ +   YT ++ GFG    +
Sbjct: 235 LQGFFRAGQIRQAWEFFLEMKKRN---------------CEIDVVTYTTVVHGFGVAGEI 279

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
               ++  EM   G  P   TYNA I+++  +   + AV +++EMVR G++P + TYN++
Sbjct: 280 KRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVL 339

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           ++  F  G +  G ++   M   GC P+  +Y ++I          +A    E+M   G 
Sbjct: 340 IRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM-GTGD 398

Query: 570 KAPVLD-YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
             P LD YN   + +    RS       + M  +G    +  + R    +  R+ RK R+
Sbjct: 399 CLPNLDTYNILISGMFVRKRS-------EDMVVAGNQAFAKEILRLQSKSGGRLLRKFRL 451


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 181/405 (44%), Gaps = 51/405 (12%)

Query: 231  FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
            FF WA +   F H+   Y  M+ + G+ RQF+    +++ M  + + + +ETF I +  +
Sbjct: 1164 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRY 1223

Query: 290  AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
              A    +AV  F  M  Y  K      + ++ +L + +   EAQ  FD LK RF P++ 
Sbjct: 1224 VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVV 1283

Query: 350  TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
             YT L+ GWCR  N+ EA RV+ EM   G  P+V  ++I+++ L + G+ + A  +F  M
Sbjct: 1284 VYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEM 1343

Query: 410  KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
               G               C  NA  +  L+       R + V  +  +M+  GCPPD +
Sbjct: 1344 IDVG---------------CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAI 1388

Query: 470  TYNALI-------------KLMK-------------------IQKMPD--EAVRIYKEMV 495
            TYN LI             K++                    I K+ D   A R++ +M 
Sbjct: 1389 TYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK 1448

Query: 496  RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
                +P   TYN++M+ +    + +M  K+  EM      P+ N+Y VLI          
Sbjct: 1449 DLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWN 1508

Query: 556  EAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
             AY + +EM+E+    P L  Y      L +AG+    +EL +KM
Sbjct: 1509 NAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 1553



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 18/226 (7%)

Query: 378  GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
            G  P+     I L G  K+ +   A +L ++MK +     V ++TI++ ++ K   A   
Sbjct: 1175 GHSPEPYMEMIDLAG--KVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEA 1232

Query: 438  CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
              +  F NR            ME+ GC PD + ++ +I  +  ++   EA   +  + + 
Sbjct: 1233 --VHAF-NR------------MEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KD 1276

Query: 498  GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
             F+P +  Y  ++  + + GN     +V+ EM   G  P+  +Y+++I  L    +   A
Sbjct: 1277 RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRA 1336

Query: 558  YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +    EM++ G     + +N       +AGR+  + ++  +M+  G
Sbjct: 1337 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG 1382



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 17/262 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
            G   N  TY+ ++  L R+ Q      +  EM + G   +  TF   M     A   +K 
Sbjct: 1312 GIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKV 1371

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            + ++  M +        T N L+E+  R    +EA  + + +K     N +++  + G  
Sbjct: 1372 LQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCI 1431

Query: 359  CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
             ++ ++  A R++ +M D   +P+ V +NI++            +KL + M      PN 
Sbjct: 1432 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 1491

Query: 419  RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKL 477
             +Y ++I  FC            G G+    +  Y   KEM E  C  P    Y  +++ 
Sbjct: 1492 NTYRVLISTFC------------GIGH---WNNAYSFFKEMIEEKCLRPSLPVYEMVLQQ 1536

Query: 478  MKIQKMPDEAVRIYKEMVRSGF 499
            ++      +   + ++MV  GF
Sbjct: 1537 LRKAGQLKKHEELVEKMVNRGF 1558


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 203/420 (48%), Gaps = 26/420 (6%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKP-GFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           NLV  VL+R  +    A +FF +  +    + H++ +++  + I  R     T+ S++  
Sbjct: 57  NLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHR 116

Query: 271 MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M    +  S +TF I    +A+A +  KAV +F  M+++     + + N +L+ L +SK 
Sbjct: 117 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176

Query: 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++A  LF  L+ RF+ +  TY V+L GWC +K   +A  V  EM+++G  P++  +N M
Sbjct: 177 VEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTM 236

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L+G  + G+   A + F  MK +                C+ +   YT ++ GFG    +
Sbjct: 237 LKGFFRAGQIRHAWEFFLEMKKRD---------------CEIDVVTYTTVVHGFGVAGEI 281

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
               ++  EM   G  P   TYNA+I+++  +   + AV +++EMVR G++P + TYN++
Sbjct: 282 KRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVL 341

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           ++  F  G +  G ++   M   GC P+  +Y ++I          +A    E+M   G 
Sbjct: 342 IRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM-GSGD 400

Query: 570 KAPVLD-YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
             P LD YN   + +    RS       + M  +G    +  + R    + +R+ RK R+
Sbjct: 401 CLPNLDTYNILISGMFVRKRS-------EDMVVAGNQAFAKEILRLQSKSGSRLLRKFRL 453


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 180/366 (49%), Gaps = 17/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF+ N   Y +++    +  + E    +  EMG+ GL++ E T+ + +N       +K+ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             ++E M +      + T NC++  L +    K+A  +FD+++ R  + N+ TY  L+GG
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR   L EA +V ++M   G  P+++ +N +++G   +GK   A+ L   +K++G SP+
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y I++  FC++         +G            ++KEMEERG  P  +TY  LI  
Sbjct: 373 LVTYNILVSGFCRKGDT------SG---------AAKMVKEMEERGIKPSKVTYTILIDT 417

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                  ++A+++   M   G  P +HTY++++  +   G      +++  M+ + C P+
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN 477

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
           +  Y  +I G   +  S  A K L+EM EK +   V  Y      L +  +S   + L +
Sbjct: 478 EVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVE 537

Query: 598 KMRFSG 603
           KM  SG
Sbjct: 538 KMIDSG 543



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 164/416 (39%), Gaps = 89/416 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF   S  +N +++ +  +  F    S   E   K +L + +F I +     A E +K+ 
Sbjct: 124 GFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSF 183

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
                                              LL +  +  F+PN+  YT L+ G C
Sbjct: 184 ----------------------------------DLLIELTEFGFSPNVVIYTTLIDGCC 209

Query: 360 RVKNLMEA----------GRVWNE-------------------------MIDKGFKPDVV 384
           +   + +A          G V NE                         M + G  P++ 
Sbjct: 210 KKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLY 269

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
            +N ++  L K G+  DA ++F+ M+ +G S N+ +Y  +I   C++             
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N   Y  LI GF    ++     L ++++ RG  P  +TYN L+     +   
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             A ++ KEM   G KP+  TY +++ ++ ++ N E   ++   M   G  PD ++Y+VL
Sbjct: 390 SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           I G   + +  EA +  + M+EK  +   + YN       + G SY   +L ++M 
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEME 505



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 146/332 (43%), Gaps = 57/332 (17%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N RTY  +++ L +    +    M E+M E G+  ++ T+   MN        K
Sbjct: 226 KLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTK 285

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +F+ M +      + T N L+  L R     EA  + D++K     PNL TY  L+
Sbjct: 286 DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLI 345

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C V  L +A  +  ++  +G  P +V +NI++ G  + G  S A K+ + M+ +G  
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM------ 449
           P+  +YTI+I  F + +                       Y+ LI GF  + +M      
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 450 ------------DIVYD-----------------LLKEMEERGCPPDGLTYNALIKLMKI 480
                       +++Y+                 LLKEMEE+   P+  +Y  +I+++  
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           ++   EA R+ ++M+ SG  P+    ++I ++
Sbjct: 526 ERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 55/252 (21%)

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y V++  + + ++L  +   +NEM+D GF P     N +L     +G  S          
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLT--FVVGSSSFN-------- 146

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                          W F  +N +     +  FG              +  +GC   G  
Sbjct: 147 -------------QWWSFFNENKSKVVLDVYSFG--------------ILIKGCCEAG-- 177

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
                   +I+K  D  +    E+   GF P +  Y  ++    + G  E  + ++ EM 
Sbjct: 178 --------EIEKSFDLLI----ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMG 225

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS- 589
           + G   ++ +YTVLI GL       + ++  E+M E G+   +  YN     L + GR+ 
Sbjct: 226 KLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTK 285

Query: 590 ---YVLDELAQK 598
               V DE+ ++
Sbjct: 286 DAFQVFDEMRER 297


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 211/503 (41%), Gaps = 95/503 (18%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDK 238
           + ++ K++D   +++ N+++   +  I LS N V  VL+      +P  AFRFF WAG +
Sbjct: 89  VNQILKLLDGSVNMESNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQ 148

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--------------------- 277
             + H    Y S++ +L  +  F+ +  +  E  EKG L                     
Sbjct: 149 KNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEE 208

Query: 278 ---------------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
                          S+ TF   +N    +   + A  +FE+M   K    V + N +++
Sbjct: 209 LLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIK 268

Query: 323 NLGRSKLPKEAQLLFDKLKHR-FTPNLTTY------------------------------ 351
              ++   K+A   F  ++ R   P+  TY                              
Sbjct: 269 GYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEI 328

Query: 352 -----TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                ++++GG C+    +E   V+  M  KG K +V  +  +++   K G  ++AI LF
Sbjct: 329 PPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLF 388

Query: 407 EVMKAKGPSPNVRSYTIMI---------------WKFCKQN-----AAVYTCLITGFGNR 446
           E MK +G  P+  +Y +++               ++FCK N     A  Y+ LI G G  
Sbjct: 389 ERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKA 448

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R+D      +EM ERGCP D   YNALI  +      +EA+ ++K M + G   T++TY
Sbjct: 449 GRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTY 508

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            +++   F+    E   K+WD MI +G  P   S+  L  GL    +   A K L+E+  
Sbjct: 509 TILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAP 568

Query: 567 KGMKAPVLDYNKFAADLSRAGRS 589
            G+  P   +      L +AGR+
Sbjct: 569 MGV-IPETAFEDMINVLCKAGRT 590


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 180/361 (49%), Gaps = 24/361 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           TYN M+S   +A +    +S+L+ M       + T+   + +   + + K+A+ + + M 
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSP--DVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           +      V T   L+E   R     +A  L D+++ R  TP++ TY VL+ G C+   L 
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA +  N+M   G +P+V+ HNI+L  +   G+  DA KL   M  KG SP+V ++ I+I
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C++          G   R       D+L++M + GC P+ L+YN L+     +K  D
Sbjct: 352 NFLCRK----------GLLGR-----AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            A+   + MV  G  P I TYN ++ +  + G  E   ++ +++  +GC P   +Y  +I
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            GL    ++G+A K L+EM  K +K   + Y+     LSR G+   +DE    ++F  +F
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK---VDE---AIKFFHEF 510

Query: 606 E 606
           E
Sbjct: 511 E 511



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 21/347 (6%)

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           +G+ R+   ++ +LE  G   +  + T+ + ++ +  A E   A+++ + M+       V
Sbjct: 150 MGKTRKAAKILEVLE--GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDV 204

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +L +L  S   K+A  + D++  R   P++ TYT+L+   CR   + +A ++ +E
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDE 264

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M D+G  PDVV +N+++ G+ K G+  +AIK    M + G  PNV ++ I++   C    
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS--- 321

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                  TG    R MD    LL +M  +G  P  +T+N LI  +  + +   A+ I ++
Sbjct: 322 -------TG----RWMD-AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + G +P   +YN ++  + +    +   +  + M+ RGC PD  +Y  ++  L    +
Sbjct: 370 MPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             +A + L ++  KG    ++ YN     L++AG++    +L  +MR
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 153/332 (46%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TYN +++ + +  + +  +  L +M   G   ++ T  I + +  +      A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +   M +  F   V T N L+  L R  L   A  + +K+ KH   PN  +Y  LL G
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHG 388

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K +  A      M+ +G  PD+V +N ML  L K GK  DA+++   + +KG SP 
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP- 447

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                ++I          Y  +I G     +      LL EM  +   PD +TY++L+  
Sbjct: 448 -----VLI---------TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +   DEA++ + E  R G +P   T+N IM    +T   +        MI RGC P 
Sbjct: 494 LSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPT 553

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + SYT+LI GL  +  + EA + L E+  KG+
Sbjct: 554 ETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 166/377 (44%), Gaps = 37/377 (9%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV- 314
           GRA++F+T+ S        G  S       +    +    ++ V   EL   +KF   + 
Sbjct: 70  GRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMV 129

Query: 315 ------DTINC--LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
                 D I C  L+    R    ++A  + + L+     P++ TY V++ G+C+   + 
Sbjct: 130 YHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEIN 189

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  V + M      PDVV +N +L  L   GK   A+++ + M  +   P+V +YTI+I
Sbjct: 190 NALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILI 246

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C+                     +   Y  L+ G     R+D     L +M   GC 
Sbjct: 247 EATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ 306

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +T+N +++ M       +A ++  +M+R GF P++ T+N+++    + G       +
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            ++M + GC P+  SY  L+ G   + +   A +YLE M+ +G    ++ YN     L +
Sbjct: 367 LEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426

Query: 586 AGR----SYVLDELAQK 598
            G+      +L++L+ K
Sbjct: 427 DGKVEDAVEILNQLSSK 443



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 21/258 (8%)

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R   L E  +    M+  G  PD++    ++ G  ++GK   A K+ EV++  G  P+V 
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVI 173

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
           +Y +MI  +CK                     + + L  ++     PD +TYN +++ + 
Sbjct: 174 TYNVMISGYCKAGE------------------INNALSVLDRMSVSPDVVTYNTILRSLC 215

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 +A+ +   M++    P + TY +++++  +        K+ DEM  RGC PD  
Sbjct: 216 DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVV 275

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y VL+ G+  + R  EA K+L +M   G +  V+ +N     +   GR    ++L   M
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM 335

Query: 600 ---RFSGKFEVSNVLARW 614
               FS      N+L  +
Sbjct: 336 LRKGFSPSVVTFNILINF 353



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 17/264 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + GF+ +  T+N +++ L R       + +LE+M + G      ++   ++ F   K+  
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+   E M        + T N +L  L +    ++A  + ++L  +  +P L TY  ++
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  +     +A ++ +EM  K  KPD + ++ ++ GL + GK  +AIK F   +  G  
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVR 516

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  ++  ++   CK                R+ D   D L  M  RGC P   +Y  LI
Sbjct: 517 PNAVTFNSIMLGLCKT---------------RQTDRAIDFLVYMINRGCKPTETSYTILI 561

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGF 499
           + +  + M  EA+ +  E+   G 
Sbjct: 562 EGLAYEGMAKEALELLNELCNKGL 585


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 202/412 (49%), Gaps = 30/412 (7%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKP-GFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           NLV  VL+R  +    A +FF +  +    + H++ +++  + I  R     T+ S++  
Sbjct: 57  NLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHR 116

Query: 271 MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M    +  S +TF I    +A+A +  KAV +F  M+++     + + N +L+ L +SK 
Sbjct: 117 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176

Query: 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++A  LF  L+ RF+ +  TY V+L GWC +K   +A  V  EM+++G  P++  +N M
Sbjct: 177 VEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTM 236

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L+G  + G+   A + F  MK +                C+ +   YT ++ GFG    +
Sbjct: 237 LKGFFRAGQIRHAWEFFLEMKKRD---------------CEIDVVTYTTVVHGFGVAGEI 281

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
               ++  EM   G  P   TYNA+I+++  +   + AV +++EMVR G++P + TYN++
Sbjct: 282 KRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVL 341

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           ++  F  G +  G ++   M   GC P+  +Y ++I          +A    E+M   G 
Sbjct: 342 IRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM-GSGD 400

Query: 570 KAPVLD-YN---------KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
             P LD YN         K + D+  AG+  +L E+ ++     KF  + VL
Sbjct: 401 CLPNLDTYNILISGMFVRKRSEDMVVAGK--LLLEMVERGFIPRKFTFNRVL 450



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 156/321 (48%), Gaps = 23/321 (7%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S N ++DVL + +   +    F    G    F+ ++ TYN +++     ++    + +L+
Sbjct: 163 SFNTILDVLCKSKRVEKAYELFRALRGR---FSVDTVTYNVILNGWCLIKRTPKALEVLK 219

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EM E+G+  ++ T+   +  F  A + + A   F  M K   +  V T   ++   G + 
Sbjct: 220 EMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAG 279

Query: 329 LPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
             K A+ +FD++ +    P++ TY  ++   C+  N+  A  ++ EM+ +G++P+V  +N
Sbjct: 280 EIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYN 339

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           +++ GL   G+ S   +L + M+ +G  PN ++Y +MI ++  + + V   L        
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMI-RYYSECSEVEKAL-------- 390

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV---RIYKEMVRSGFKPTIH 504
                  L ++M    C P+  TYN LI  M ++K  ++ V   ++  EMV  GF P   
Sbjct: 391 ------GLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKF 444

Query: 505 TYNMIMKSYFQTGNYEMGRKV 525
           T+N ++     TGN    +++
Sbjct: 445 TFNRVLNGLLLTGNQAFAKEI 465



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 5/172 (2%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+M+ +L +    E  V M EEM  +G   ++ T+ + +     A E  +   + + M
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 361

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWC---RV 361
                +    T N ++         ++A  LF+K+      PNL TY +L+ G     R 
Sbjct: 362 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRS 421

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++++ AG++  EM+++GF P     N +L GLL  G ++ A ++  +    G
Sbjct: 422 EDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG 473


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 196/419 (46%), Gaps = 30/419 (7%)

Query: 210 SHNLVVDVLERFRH---ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           S N++++ L R  H   A     + F     K G   ++ T+N++++ L    + +  V 
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMF-----KLGIQPDAITFNTLINGLCNEGKIKEAVG 187

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  EM   G   ++ ++   +N          AV +F  M + + K  V T N ++++L 
Sbjct: 188 LFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLC 247

Query: 326 RSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           + +L  EA + L + +     P++ TY  +L G+C +  L EA R++ EM+ +   PD V
Sbjct: 248 KDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTV 307

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------IM 424
             NI+++GL K G  S+A  + E M  KG  PN  +Y                     IM
Sbjct: 308 TFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM 367

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I K C  N + Y  LI G+   +RM+    LL EM E+   PD +TY+ L++ +     P
Sbjct: 368 IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP 427

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA+ ++KEM  SG  P +  Y++++  + + G+ +   K+  EM  R   P+   YT+L
Sbjct: 428 REALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTIL 487

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           I G+    +   A +   ++   G++  +  YN     L + G S    E  +KM   G
Sbjct: 488 IRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDG 546



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 177/369 (47%), Gaps = 27/369 (7%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D L + R     A  F     D+ G   +  TYN+++       Q      + 
Sbjct: 237 VTYNTIIDSLCKDRLVNE-AVEFLSEMVDR-GIPPDVVTYNTILHGFCSLGQLNEATRLF 294

Query: 269 EEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
           +EM G   +    TF I ++         +A  + E M +   +    T N L++     
Sbjct: 295 KEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLH 354

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           +++ +  ++L   +     PNL++Y +L+ G+C+ K + EA R+ +EM +K   PD V +
Sbjct: 355 NQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTY 414

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           + +++GL ++G+  +A+ LF+ M + G  P++ +Y+I++  FCK                
Sbjct: 415 STLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHG-------------- 460

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +D    LLKEM ER   P+ + Y  LI+ M I    + A  ++ ++   G +P I TY
Sbjct: 461 -HLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTY 519

Query: 507 NMIMKSYFQTG----NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           N+++K   + G     YE  RK+ D+    G  PD  SY V+I G +    S  A + ++
Sbjct: 520 NVMIKGLLKEGLSDEAYEFFRKMEDD----GFLPDSCSYNVIIQGFLQNQDSSTAIQLID 575

Query: 563 EMLEKGMKA 571
           EM+ K   A
Sbjct: 576 EMVGKRFSA 584



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 127/348 (36%), Gaps = 90/348 (25%)

Query: 346 PNLTTY-----------------------------------TVLLGGWCRVKNLMEAGRV 370
           P++  +                                    VL+   CR+ ++  A  V
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
             +M   G +PD +  N ++ GL   GK  +A+ LF  M   G  PNV SY  +I   CK
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 431 Q--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                                N   Y  +I      R ++   + L EM +RG PPD +T
Sbjct: 214 NGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVT 273

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMV----------------------------------- 495
           YN ++         +EA R++KEMV                                   
Sbjct: 274 YNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMT 333

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G +P  +TYN +M  Y      +   KV   MI +GC P+ +SY +LI G     R  
Sbjct: 334 EKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMN 393

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA + L EM EK +    + Y+     L + GR      L ++M  SG
Sbjct: 394 EAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 4/163 (2%)

Query: 442 GFGNRRRMDIVYD----LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
           GFG+    DI  D        M      P  + +   +  +  +K    AV +  +M   
Sbjct: 66  GFGSNTSNDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLF 125

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G    +++ N+++    +  + +    V  +M + G  PD  ++  LI GL ++ +  EA
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
                EM+  G +  V+ YN     L + G + +   + +KM 
Sbjct: 186 VGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKME 228



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           DA+  F  M    P P+V  +   +    K               +++      L  +M+
Sbjct: 79  DALTSFYRMVRMNPRPSVVEFGKFLGSIAK---------------KKQYSSAVSLCNQMD 123

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             G   +  + N LI  +      D AV +  +M + G +P   T+N ++      G  +
Sbjct: 124 LFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIK 183

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +++EM+  G  P+  SY  +I GL     +  A +   +M +   K  V+ YN   
Sbjct: 184 EAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTII 243

Query: 581 ADLSR 585
             L +
Sbjct: 244 DSLCK 248



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           F+  C +G  P        Y+ ++    +    +  + +L+EM E+ +  ++  + I + 
Sbjct: 434 FKEMCSSGLLPDLM----AYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIR 489

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
               A + + A  +F  ++    +  + T N +++ L +  L  EA   F K++   F P
Sbjct: 490 GMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLP 549

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           +  +Y V++ G+ + ++   A ++ +EM+ K F  D     ++L+
Sbjct: 550 DSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 183/373 (49%), Gaps = 32/373 (8%)

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           LG+ R+   ++ +LE  G   +  + T+ + ++ +  A E   A+++ + M+       V
Sbjct: 150 LGKTRKAAKILEILE--GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDV 204

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +L +L  S   K+A  + D++  R   P++ TYT+L+   CR   +  A ++ +E
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDE 264

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-- 431
           M D+G  PDVV +N+++ G+ K G+  +AIK    M + G  PNV ++ I++   C    
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 432 ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                             +   +  LI     +  +    D+L++M + GC P+ L+YN 
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+     +K  D A+   + MV  G  P I TYN ++ +  + G  E   ++ +++  +G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C P   +Y  +I GL    ++G+A K L+EM  K +K   + Y+     LSR G+   +D
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK---VD 501

Query: 594 ELAQKMRFSGKFE 606
           E    ++F  +FE
Sbjct: 502 E---AIKFFHEFE 511



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 28/334 (8%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV- 314
           GRA++FET+ S        G  S      A+    +    ++ V   EL   +KF   + 
Sbjct: 70  GRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMV 129

Query: 315 ------DTINC--LLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                 D I C  L+    R  K  K A++L         P++ TY V++ G+C+   + 
Sbjct: 130 YHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEIN 189

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  V + M      PDVV +N +L  L   GK   A+++ + M  +   P+V +YTI+I
Sbjct: 190 NALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILI 246

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C+          +G G+  +      LL EM +RGC PD +TYN L+  +  +   D
Sbjct: 247 EATCRD---------SGVGHAMK------LLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA++   +M  SG +P + T+N+I++S   TG +    K+  +M+R+G  P   ++ +LI
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             L  +   G A   LE+M + G +   L YN  
Sbjct: 352 NFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 172/414 (41%), Gaps = 93/414 (22%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           TYN M+S   +A +    +S+L+ M       + T+   + +   + + K+A+ + + M 
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSP--DVVTYNTILRSLCDSGKLKQAMEVLDRML 231

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           +      V T   L+E   R      A  L D+++ R  TP++ TY VL+ G C+   L 
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA +  N+M   G +P+V+ HNI+L  +   G+  DA KL   M  KG SP+V ++ I+I
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C++                    N+  Y  L+ GF   ++MD   + L+ M  RGC 
Sbjct: 352 NFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411

Query: 466 PD-----------------------------------GLTYNALI----------KLMKI 480
           PD                                    +TYN +I          K +K+
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 481 -------------------------QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
                                    +   DEA++ + E  R G +P   T+N IM    +
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +   +        MI RGC P++ SYT+LI GL  +  + EA + L E+  KG+
Sbjct: 532 SRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 21/258 (8%)

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R   L E  +    M+  G  PD++    ++ G  ++GK   A K+ E+++  G  P+V 
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
           +Y +MI  +CK                     + + L  ++     PD +TYN +++ + 
Sbjct: 174 TYNVMISGYCKAGE------------------INNALSVLDRMSVSPDVVTYNTILRSLC 215

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 +A+ +   M++    P + TY +++++  +        K+ DEM  RGC PD  
Sbjct: 216 DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV 275

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y VL+ G+  + R  EA K+L +M   G +  V+ +N     +   GR    ++L   M
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM 335

Query: 600 ---RFSGKFEVSNVLARW 614
               FS      N+L  +
Sbjct: 336 LRKGFSPSVVTFNILINF 353



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 17/264 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + GF+ +  T+N +++ L R       + +LE+M + G      ++   ++ F   K+  
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+   E M        + T N +L  L +    ++A  + ++L  +  +P L TY  ++
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  +     +A ++ +EM  K  KPD + ++ ++ GL + GK  +AIK F   +  G  
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR 516

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  ++  ++   CK                R+ D   D L  M  RGC P+  +Y  LI
Sbjct: 517 PNAVTFNSIMLGLCKS---------------RQTDRAIDFLVFMINRGCKPNETSYTILI 561

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGF 499
           + +  + M  EA+ +  E+   G 
Sbjct: 562 EGLAYEGMAKEALELLNELCNKGL 585



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 21/220 (9%)

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           ++  F  + V  N  L  +++ G+  +  K  E M   G  P++   T +I  FC+    
Sbjct: 94  VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCR---- 149

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                    G  R+   + ++L   E  G  PD +TYN +I         + A+ +   M
Sbjct: 150 --------LGKTRKAAKILEIL---EGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM 198

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             S   P + TYN I++S   +G  +   +V D M++R C PD  +YT+LI         
Sbjct: 199 SVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
           G A K L+EM ++G    V+ YN     + + GR   LDE
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR---LDE 292


>gi|116790303|gb|ABK25569.1| unknown [Picea sitchensis]
          Length = 541

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 198/427 (46%), Gaps = 25/427 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L+E  + +S   V DVL+    A   A +FF WAG K    H+   +N ++ +LG+
Sbjct: 112 VENALNELRLGVSIQFVEDVLKLSYGAGMEAVKFFRWAGLKLTRKHSPLAWNLLVDLLGK 171

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            + F+ M   ++ M  +G + ME F      +  A +  +A   FE+M +Y  +  V  +
Sbjct: 172 EKLFDAMWDCIKVMKNEGTVPMEIFSSVFGNYVQAGKLDEAKMTFEVMEQYGCRHDVVAL 231

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI-D 376
           NC +  L R K  K A   FD++K R  P+  TY ++L GW    N+  A   + EMI  
Sbjct: 232 NCYISALCRYKQAKAALEFFDRVKARIAPDADTYALMLEGWEIEGNVSMAKTTFGEMIVH 291

Query: 377 KGFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY-------------- 421
            G+ P +  A+N  L  L+   +  +A+K   +MK+    P++  +              
Sbjct: 292 LGWVPNNTSAYNAFLSTLVNGFQVEEALKFLVMMKSLKCLPDLGFFRNTLQLLYQRKDTK 351

Query: 422 -TIMIWKFCKQNAAV-----YTCLI--TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
               +W+  +Q+  V     Y  +I      N  ++D    LL EM   G  PD  +YN 
Sbjct: 352 NAYGLWELMRQSGIVPDLPTYNTMIGVCCSVNPIQVDFADRLLVEMVCNGAFPDFRSYNT 411

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           + + + I +  +EA  I++EM ++ F P    Y   +K YF+  + +M   +W  MI++ 
Sbjct: 412 IFEALIIARKVEEASSIFREMTKNEFCPLYANYVRAIKMYFEVEDPDMAVIMWKHMIQKA 471

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             P  +    LI G     R  EA KY  E + +G++ PV    K   +  +AG+     
Sbjct: 472 IFPKSDCAATLIDGFCDLGRVSEALKYSLETINRGVEIPVETMTKL-KNARQAGKQDAYG 530

Query: 594 ELAQKMR 600
           +L +KM+
Sbjct: 531 QLEKKMK 537


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 200/436 (45%), Gaps = 43/436 (9%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           N +     ++L + ++ +    +F  WA     F    +     + IL R + ++T  ++
Sbjct: 45  NFTPEAASNLLLKSQNNQELILKFLTWANPHQFFTLRCKCIT--LHILTRFKLYKTAQTL 102

Query: 268 LEEMGEKGL--------------------LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
            E++  K L                     +   F + + +++      KA++I  L   
Sbjct: 103 AEDVAAKTLDDEDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQA 162

Query: 308 YKFKAGVDTINCLLENLGRSK--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           + F  GV + N +L+   RSK  +     +  + L+ + +PN+ TY +L+ G+C   NL 
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLD 222

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R ++ M  KG  P+VV +N +++G  K+ K  D  +L   M  KG  PN+ SY ++I
Sbjct: 223 VALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVI 282

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C++                RM  +  +L EM +RG   D +TYN LIK    +    
Sbjct: 283 NGLCREG---------------RMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A+ ++ EM+R G  P++ TY  ++ S  + GN     +  D+M  RG CP++ +YT L+
Sbjct: 328 QALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLV 387

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRF 601
            G   +    EAY+ L+EM++ G    V+ YN        AG+      VL+++ +K   
Sbjct: 388 DGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLT 447

Query: 602 SGKFEVSNVLARWAET 617
                 S VL+ +  +
Sbjct: 448 PDVVSYSTVLSGFCRS 463



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 164/328 (50%), Gaps = 17/328 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +YN +++ L R  + + +  +L EM ++G  L   T+   +  +       +A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQA 329

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M ++     V T   L+ ++ ++     A    D+++ R   PN  TYT L+ G
Sbjct: 330 LVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   + EA RV  EMID GF P VV +N ++ G    GK  DAI + E MK KG +P+
Sbjct: 390 FSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPD 449

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY+ ++  FC+                  +D    + ++M  +G  PD +TY++LI+ 
Sbjct: 450 VVSYSTVLSGFCRS---------------YDVDEALRVKRKMVAKGIKPDTITYSSLIQG 494

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              Q+   EA  ++ EM+R G  P   TY  ++ +Y   G+ +   ++ +EM+ +G  PD
Sbjct: 495 FCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPD 554

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +Y+VLI GL  Q R+ EA + L ++ 
Sbjct: 555 VVTYSVLINGLNKQARTREAKRLLLKLF 582



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 163/360 (45%), Gaps = 23/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           GF     +YN+++    R+ R      ++ +EM +  +  ++ T+ I +  F  A     
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV 223

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A+  F+ M K      V T N L++   +  K+    +LL         PNL +Y V++ 
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR   + E   V  EM  +G+  D V +N +++G  K G    A+ +   M   G SP
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSP 343

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           +V +YT +I   CK                     N   YT L+ GF  +  M+  Y +L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           KEM + G  P  +TYNALI    I     +A+ + ++M   G  P + +Y+ ++  + ++
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRS 463

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + +   +V  +M+ +G  PD  +Y+ LI G   Q R+ EA    +EML  G+      Y
Sbjct: 464 YDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTY 523



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 148/338 (43%), Gaps = 37/338 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF+ +  TYN++++    A +    +++LE+M EKGL   + ++   ++ F  + +  +A
Sbjct: 410 GFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEA 469

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           + +   M     K    T + L++     +  KEA  LFD+ L+    P+  TYT L+  
Sbjct: 470 LRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINA 529

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C   +L +A ++ NEM++KG  PDVV +++++ GL K  +  +A +L   +  +   P+
Sbjct: 530 YCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPS 589

Query: 418 ---------------VRSYTIMIWKFC--------------------KQNAAVYTCLITG 442
                           +S   +I  FC                    K +   Y  +I G
Sbjct: 590 DVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHG 649

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                 +   Y L KEM + G     +T  AL+K +  +   +E   +   ++RS     
Sbjct: 650 HCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSE 709

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
                ++++   + GN ++   V  EM + G  P+  S
Sbjct: 710 AEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGKS 747


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 214/456 (46%), Gaps = 36/456 (7%)

Query: 178 PREIERVCKVI-DELFSLDRNMEAVLDECGIN---LSHNLVVDVLERFRHARRPAFRFFC 233
           P EIER+ ++I  ++    R  E +    G+    L  +LV  V+ R       A+  F 
Sbjct: 32  PAEIERLAEIILRQVVDSKRAGEGIEKSLGLYGDILVPDLVGKVIHRIPDPNT-AWEVFQ 90

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFET----MVSMLEEMGEKGLLSMETFKIAMNAF 289
           WAG +  F HN  T N+++S+  +AR+ E       S ++ + E   +S  T    MN F
Sbjct: 91  WAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTL---MNGF 147

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
             A + KKA+A+F  M      A + + N +L  L        A  +F  +   F+PNL 
Sbjct: 148 FKAGDVKKALALFGEMKDSGI-AVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLI 206

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           +YT+++ G C+ + + +A  ++ +M+DK   PDVV +  +++GL K  +  +A  LFE  
Sbjct: 207 SYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEA 266

Query: 410 KAKGPSPNVRSYTIMIWKFCK----QNAA-----------------VYTCLITGFGNRRR 448
           +AKG  P V +Y  MI   CK    +NA                   Y+ LI G     R
Sbjct: 267 RAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNR 326

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGFKPTIHTYN 507
            +  Y+L +EM + GC PD +TYN L+  +      D+A+ I+++M V +   P + TY 
Sbjct: 327 GEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYT 386

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  + +        K+  EM  R   PD  ++T +I  L  + R  EA++  E  + K
Sbjct: 387 VLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFES-IGK 445

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             K   + +N   A   +  R     +L  +M  SG
Sbjct: 446 TCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSG 481



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 159/333 (47%), Gaps = 20/333 (6%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAV 299
           F+ N  +Y  M+  L ++R+ +  +++ ++M +K +   + T+   ++     +  K+A 
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAY 260

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGG 357
            +FE          V T N +++ L +    + A  L+D +  +    P++ TY+ L+ G
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING 320

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SP 416
                   +A  ++ EM+D G  PDVV +N +L+GL K G    A+++F  M       P
Sbjct: 321 LNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDP 380

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           NV +YT++I +FCK +               R+     L KEME R   PD +T+  +I+
Sbjct: 381 NVITYTVLIDRFCKVD---------------RLGDAVKLAKEMEGRSLLPDAVTFTTVIQ 425

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  +   DEA  +++ + ++  KP    +N ++  Y +    +  +K+ D M+  GC P
Sbjct: 426 KLCKESRIDEAHELFESIGKT-CKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAP 484

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +YT L+ G     R  +A     EM+E G 
Sbjct: 485 TLATYTALVTGFCRTGRYSDALIMYHEMIEMGF 517



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 29/337 (8%)

Query: 181 IERVCKV--IDELFSLDRNM--EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
           I+ +CK   +D+  +L + M  +A+  +    +++  ++D L + R  +  A+  F  A 
Sbjct: 212 IDGLCKSRKVDKAITLFKQMVDKAIYPDV---VTYGALIDGLGKQRRVKE-AYDLFEEAR 267

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKE 294
            K G      TYN+M+  L +  + E  +++ ++M  +  L   M T+   +N    +  
Sbjct: 268 AK-GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNR 326

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK--HRFTPNLTTYT 352
            +KA  ++E M        V T N LL+ L +S    +A  +F K+   +   PN+ TYT
Sbjct: 327 GEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYT 386

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           VL+  +C+V  L +A ++  EM  +   PD V    +++ L K  +  +A +LFE     
Sbjct: 387 VLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFE----- 441

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                       I K CK ++ ++  ++ G+    R+D    L   M + GC P   TY 
Sbjct: 442 -----------SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYT 490

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           AL+          +A+ +Y EM+  GF P  H   ++
Sbjct: 491 ALVTGFCRTGRYSDALIMYHEMIEMGFPPERHLAELV 527


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 202/420 (48%), Gaps = 26/420 (6%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKP-GFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           NLV  VL+R  +    A +FF +  +    + H++ +++  + I  R     T+ S++  
Sbjct: 51  NLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHR 110

Query: 271 MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M    +  S +TF I    +A+A +  KAV +F  M+++     + + N +L+ L +SK 
Sbjct: 111 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 170

Query: 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++A  LF  L+ RF+ +  TY V+L GWC +K   +   V  EM+++G  P++  +N M
Sbjct: 171 VEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTM 230

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L+G  + G+   A + F  MK +                C+ +   YT ++ GFG    +
Sbjct: 231 LKGFFRAGQIRHAWEFFLEMKKRD---------------CEIDVVTYTTVVHGFGVAGEI 275

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
               ++  EM   G  P   TYNA+I+++  +   + AV +++EMVR G++P + TYN++
Sbjct: 276 KRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVL 335

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           ++  F  G +  G ++   M   GC P+  +Y ++I          +A    E+M   G 
Sbjct: 336 IRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM-GSGD 394

Query: 570 KAPVLD-YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
             P LD YN   + +    RS       + M  +G    +  + R    + +R+ RK R+
Sbjct: 395 CLPNLDTYNILISGMFVRKRS-------EDMVVAGNQAFAKEILRLQSKSGSRLLRKFRL 447


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 189/405 (46%), Gaps = 29/405 (7%)

Query: 221 FRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-L 277
            R + RP  A +FF WAG++ G+ H+  +YN ++ IL ++        + +++   G   
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSP 60

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ TFKI +     A +  +A+     ++++     V   N L+  L +   P +A  LF
Sbjct: 61  NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120

Query: 338 DKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK--PDVVAHNIMLEGLL 394
           + ++  R  P + TY  ++ G C+  NL +A  +  EMI KG K  PD+V +N ++    
Sbjct: 121 ENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFY 180

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           +  +  +A    E MKA G +P+V +  I++   CK                     +  
Sbjct: 181 RASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVI 240

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  +I       ++    ++LK M    C PD +T+N L+       M   A+ + +EM
Sbjct: 241 TYNSIIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            R    P + TY +++    + G  ++   + +E++R+G  PD  +YT L+ GL      
Sbjct: 298 CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI 357

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            EA+K ++EM  +G +  V+ Y+   +   RAG  +   E+  +M
Sbjct: 358 EEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEM 402



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 172/403 (42%), Gaps = 29/403 (7%)

Query: 209 LSHNLVVDVLERFRHARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           +++N +++   R    R   AFR    A    G   +  T N ++S + +    E  + +
Sbjct: 170 VTYNTLINAFYRASRIREACAFREKMKAA---GINPDVLTCNILVSGICKDGDVEEALEI 226

Query: 268 LEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           L+ M   G +  + T+   ++A   A    K V   E++        + T N LL+   +
Sbjct: 227 LDGMKLAGPVPDVITYNSIIHALCVAG---KVVEAAEILKTMSCSPDLVTFNTLLDGFCK 283

Query: 327 SK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +  LP+  ++L +  +    P++ TYT+L+ G CRV  +  A  +  E++ +G+ PDV+A
Sbjct: 284 AGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIA 343

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA----------- 434
           +  +++GL K G+  +A KL + M  +G    V  Y+ ++  +C+               
Sbjct: 344 YTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMV 403

Query: 435 ---------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                     Y  ++ G      +     L+ ++  RG  PD +TYN LI  +       
Sbjct: 404 SINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVR 463

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +  EM   G  P   T   ++    + G  +    +  EM R+   P+   YT LI
Sbjct: 464 EACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLI 523

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            GL   DR  +A   L+ M  +G+      Y K    +S  GR
Sbjct: 524 DGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGR 566



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 140/321 (43%), Gaps = 24/321 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++    +A      + +LEEM  + +L  + T+ I +N      + + A  + E +
Sbjct: 273 TFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEI 332

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNL 364
            +  +   V     L++ L +S   +EA  L  ++  R     +  Y+ L+ G+CR  N+
Sbjct: 333 VRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNV 392

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  +  EM+     P +  +NI+L GL+K G  S A+ L   + A+G  P+V +Y  +
Sbjct: 393 HKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTL 452

Query: 425 IWKFCKQNAAVYTC--------------------LITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK N     C                    ++ G     R+D  + L+ EM  +  
Sbjct: 453 IDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRH 512

Query: 465 PPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            P+ + Y +LI  L K  +M D+A  +   M   G       Y  ++ S    G      
Sbjct: 513 APNVVVYTSLIDGLCKSDRM-DDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAM 571

Query: 524 KVWDEMIRRGCCPDDNSYTVL 544
            ++DEM+ RG  PD ++   L
Sbjct: 572 AMYDEMVARGFLPDGSTSKTL 592



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 17/285 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G+  +   Y S++  L ++ + E    +++EM  +G  + +  +   ++ +  A    
Sbjct: 334 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH 393

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KA  I   M        + T N +L  L +   + K   L+ D +   + P++ TY  L+
Sbjct: 394 KAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 453

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   + EA  + +EM  +G  P+ V    ++ GL ++G+  DA  L   M  K  +
Sbjct: 454 DGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA 513

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV                VYT LI G     RMD    +L  M  +G   D   Y  LI
Sbjct: 514 PNV---------------VVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLI 558

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             M       EA+ +Y EMV  GF P   T   + ++      +E
Sbjct: 559 VSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE 603



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 19/290 (6%)

Query: 326 RSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           RS  P  A   FD    +  +  ++ +Y  LL    +  +    G+V+ +++  G  P++
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNL 62

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           V   I++ G  K G+   A++    +     +P+V  + ++I    K             
Sbjct: 63  VTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKD------------ 110

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK--P 501
           GN    D    L + ME     P+ +TYN +I  +      ++A  + +EM+R G K  P
Sbjct: 111 GNP---DQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAP 167

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            I TYN ++ ++++           ++M   G  PD  +  +L+ G+       EA + L
Sbjct: 168 DIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEIL 227

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           + M   G    V+ YN     L  AG+     E+ + M  S      N L
Sbjct: 228 DGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTL 277



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 38/187 (20%)

Query: 478 MKIQKMPDEAVRIYK-EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-- 534
           M+    PD A++ +     + G+K  +H+YN ++    ++G++    KV+ +++  GC  
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSP 60

Query: 535 ---------------------------------CPDDNSYTVLIGGLISQDRSGEAYKYL 561
                                             PD   + VLI GL       +A K  
Sbjct: 61  NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
           E M    +K  ++ YN   + L ++G      EL ++M   G     +++     T  N 
Sbjct: 121 ENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTY--NTLINA 178

Query: 622 VYRKDRI 628
            YR  RI
Sbjct: 179 FYRASRI 185


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 180/389 (46%), Gaps = 27/389 (6%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAK 293
            G KP       TY ++++ L   + F+++ S++ ++ E G+     F    +NAF+ + 
Sbjct: 101 GGHKPSLV----TYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESG 156

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTY 351
             ++A+  F  M +   K    T N L++  G +  P+E+Q L + +       PNL TY
Sbjct: 157 NMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTY 216

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            VL+  WC  KN+M+A  V  +M+  G +PD V +N +     + G+ S A  +   M+ 
Sbjct: 217 NVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
               PN R+  I+I  +CK+                    N  V+  LI GF +    D 
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDG 336

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V ++L  MEE G  PD +T++ ++         D+   I+ +MV++  +P  H Y+++ K
Sbjct: 337 VNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAK 396

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y + G  E   ++ + MI+ G  P+   +T +I G  S  R   A K  E+M E G+  
Sbjct: 397 GYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAP 456

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +  +         A + +  +E+ Q M 
Sbjct: 457 NLKTFETLIWGYGEARQPWKSEEVLQIME 485



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F   +  F  A +R     +  LM ++  K  V T + ++     +    + + +FD + 
Sbjct: 321 FNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMV 380

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           K R  P+   Y++L  G+ R     +A  + N MI  GF P+VV    ++ G    G+  
Sbjct: 381 KARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRME 440

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            AIK+FE M   G +PN++++  +IW               G+G  R+     ++L+ ME
Sbjct: 441 YAIKIFEKMCECGIAPNLKTFETLIW---------------GYGEARQPWKSEEVLQIME 485

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           E    P+  T   + +  +   +  EA RI
Sbjct: 486 EFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 404 KLFEVMKAKGPSPNVRSY-TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           KL  +M  KG    V+S    +I    K +   YT L+     ++  D ++ ++ ++EE 
Sbjct: 77  KLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEEN 136

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NA+I          EA++ + +M  SG KPT  T+N ++K Y   G  E  
Sbjct: 137 GMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEES 196

Query: 523 RKVW-----DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +K+      DE +R    P+  +Y VL+    ++    +A+  + +M+  G++   + YN
Sbjct: 197 QKLLELMSQDENVR----PNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYN 252

Query: 578 KFAADLSRAGRSYVLDELAQKMRFS 602
             A   ++ G +   + +  +M+ S
Sbjct: 253 TIATAYAQNGEASQAEGIILEMQNS 277



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/348 (18%), Positives = 135/348 (38%), Gaps = 59/348 (16%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSMETFKIA 285
           A ++F W   + G    + T+N+++   G A + E    +LE M   E    ++ T+ + 
Sbjct: 161 AMKYF-WKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVL 219

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRF 344
           + A+   K   KA  +   M     +    T N +     ++    +A+ ++ +      
Sbjct: 220 VRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNV 279

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL---------- 394
            PN  T  +++GG+C+   + EA +    M D G +P++V  N +++G +          
Sbjct: 280 QPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNE 339

Query: 395 ------KIGKRSDAIKLFEVMKAKGPS-------------------PNVRSYTIMIWKFC 429
                 + G + D I    +M A   +                   P+   Y+I+   + 
Sbjct: 340 VLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYV 399

Query: 430 KQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           +                     N  ++T +I G+ +  RM+    + ++M E G  P+  
Sbjct: 400 RAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLK 459

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           T+  LI      + P ++  + + M     +P   T  ++ +++  TG
Sbjct: 460 TFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATG 507



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 4/144 (2%)

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+ +M  +  P E   I   ++  G KP++ TY  ++ +     +++    +  ++   G
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENG 137

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----S 589
             PD   +  +I          EA KY  +M E G K     +N        AG      
Sbjct: 138 MEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQ 197

Query: 590 YVLDELAQKMRFSGKFEVSNVLAR 613
            +L+ ++Q           NVL R
Sbjct: 198 KLLELMSQDENVRPNLRTYNVLVR 221


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 180/389 (46%), Gaps = 27/389 (6%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAK 293
            G KP       TY ++++ L   + F+++ S++ ++ E G+     F    +NAF+ + 
Sbjct: 101 GGHKPSLV----TYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESG 156

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTY 351
             ++A+  F  M +   K    T N L++  G +  P+E+Q L + +       PNL TY
Sbjct: 157 NMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTY 216

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            VL+  WC  KN+M+A  V  +M+  G +PD V +N +     + G+ S A  +   M+ 
Sbjct: 217 NVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
               PN R+  I+I  +CK+                    N  V+  LI GF +    D 
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDG 336

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V ++L  MEE G  PD +T++ ++         D+   I+ +MV++  +P  H Y+++ K
Sbjct: 337 VNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAK 396

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y + G  E   ++ + MI+ G  P+   +T +I G  S  R   A K  E+M E G+  
Sbjct: 397 GYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAP 456

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +  +         A + +  +E+ Q M 
Sbjct: 457 NLKTFETLIWGYGEARQPWKSEEVLQIME 485



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F   +  F  A +R     +  LM ++  K  V T + ++     +    + + +FD + 
Sbjct: 321 FNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMV 380

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           K R  P+   Y++L  G+ R     +A  + N MI  GF P+VV    ++ G    G+  
Sbjct: 381 KARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRME 440

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            AIK+FE M   G +PN++++  +IW               G+G  R+     ++L+ ME
Sbjct: 441 YAIKIFEKMCECGIAPNLKTFETLIW---------------GYGEARQPWKSEEVLQIME 485

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           E    P+  T   + +  +   +  EA RI
Sbjct: 486 EFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 404 KLFEVMKAKGPSPNVRSY-TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           KL  +M  KG    V+S    +I    K +   YT L+     ++  D ++ ++ ++EE 
Sbjct: 77  KLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEEN 136

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NA+I          EA++ + +M  SG KPT  T+N ++K Y   G  E  
Sbjct: 137 GMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEES 196

Query: 523 RKVW-----DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +K+      DE +R    P+  +Y VL+    ++    +A+  + +M+  G++   + YN
Sbjct: 197 QKLLELMSQDENVR----PNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYN 252

Query: 578 KFAADLSRAGRSYVLDELAQKMRFS 602
             A   ++ G +   + +  +M+ S
Sbjct: 253 TIATAYAQNGEASQAEGIILEMQNS 277



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/348 (18%), Positives = 135/348 (38%), Gaps = 59/348 (16%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSMETFKIA 285
           A ++F W   + G    + T+N+++   G A + E    +LE M   E    ++ T+ + 
Sbjct: 161 AMKYF-WKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVL 219

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRF 344
           + A+   K   KA  +   M     +    T N +     ++    +A+ ++ +      
Sbjct: 220 VRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNV 279

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL---------- 394
            PN  T  +++GG+C+   + EA +    M D G +P++V  N +++G +          
Sbjct: 280 QPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNE 339

Query: 395 ------KIGKRSDAIKLFEVMKAKGPS-------------------PNVRSYTIMIWKFC 429
                 + G + D I    +M A   +                   P+   Y+I+   + 
Sbjct: 340 VLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYV 399

Query: 430 KQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           +                     N  ++T +I G+ +  RM+    + ++M E G  P+  
Sbjct: 400 RAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLK 459

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           T+  LI      + P ++  + + M     +P   T  ++ +++  TG
Sbjct: 460 TFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATG 507



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 4/144 (2%)

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+ +M  +  P E   I   ++  G KP++ TY  ++ +     +++    +  ++   G
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENG 137

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----S 589
             PD   +  +I          EA KY  +M E G K     +N        AG      
Sbjct: 138 MEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQ 197

Query: 590 YVLDELAQKMRFSGKFEVSNVLAR 613
            +L+ ++Q           NVL R
Sbjct: 198 KLLELMSQDENVRPNLRTYNVLVR 221


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 196/436 (44%), Gaps = 60/436 (13%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDE---CGINLSHNLVVDVLERFRHARRPAFRFFCWA 235
           + +E + KV D L   D + E V+ E   C + ++ +LV+ VL RF +    A+ FF WA
Sbjct: 97  KPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWA 156

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG---EKGLLSMETFKIAMNAFAAA 292
             + G+ H+  TYN+M+ +LG+ R F+ M  ++ EM    E  L++++T    M   A +
Sbjct: 157 NSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKS 216

Query: 293 KERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
            +  KAV A  E+   Y  K     +N L++ L +    + A  +F KL     P+  T+
Sbjct: 217 GKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTF 276

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            +L+ G+C+ +   +A  + + M    F PDVV +   +E   K G      ++ E M+ 
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G +PNV +YTI               ++   G  +++     + ++M+E GC PD   Y
Sbjct: 337 NGCNPNVVTYTI---------------VMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFY 381

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG----RKVWD 527
           ++LI ++       +A  I+++M   G +  +  YN ++ +       EM     +++ D
Sbjct: 382 SSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMED 441

Query: 528 E----------------------------------MIRRGCCPDDNSYTVLIGGLISQDR 553
           E                                  M++     D ++Y +LI GL    +
Sbjct: 442 EEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGK 501

Query: 554 SGEAYKYLEEMLEKGM 569
             EA  + EE + KGM
Sbjct: 502 VEEACLFFEEAVRKGM 517



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 28/226 (12%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDA----IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           G K D +A N +++ L+K      A    +KLF+ +K     P+ R++ I+I  FCK   
Sbjct: 234 GVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIK-----PDARTFNILIHGFCKARK 288

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                    F + R M    DL+K  E     PD +TY + ++    +        + +E
Sbjct: 289 ---------FDDARAM---MDLMKVTE---FTPDVVTYTSFVEAYCKEGDFRRVNEMLEE 333

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M  +G  P + TY ++M S  ++        V+++M   GC PD   Y+ LI  L    R
Sbjct: 334 MRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGR 393

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             +A +  E+M  +G++  VL YN   +    A   +  DE+A ++
Sbjct: 394 FKDAAEIFEDMTNQGVRRDVLVYNTMIS----AALHHSRDEMALRL 435



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 25/260 (9%)

Query: 350 TYTVLLG--GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM---LEGLLKIGKRSDAIK 404
           TY  ++   G CR  +LM    + NEM +K  +  +V  + M   +  L K GK + A+ 
Sbjct: 168 TYNAMVDVLGKCRNFDLM--WELVNEM-NKNEESKLVTLDTMSKVMRRLAKSGKYNKAVD 224

Query: 405 LF-EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            F E+ K+ G   +  +   ++    K+N+  +               ++D +K      
Sbjct: 225 AFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHA--------HEVFLKLFDTIK------ 270

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD  T+N LI      +  D+A  +   M  + F P + TY   +++Y + G++    
Sbjct: 271 --PDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVN 328

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           ++ +EM   GC P+  +YT+++  L    +  EA    E+M E G       Y+     L
Sbjct: 329 EMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHIL 388

Query: 584 SRAGRSYVLDELAQKMRFSG 603
           S+ GR     E+ + M   G
Sbjct: 389 SKTGRFKDAAEIFEDMTNQG 408



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 5/200 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER-KKA 298
           G   N  TY  +M  LG+++Q    + + E+M E G +    F  ++    +   R K A
Sbjct: 338 GCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDA 397

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLL---FDKLKHRFTPNLTTYTVL 354
             IFE M     +  V   N ++   L  S+     +LL    D+     +PN+ TY  L
Sbjct: 398 AEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPL 457

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L   C  K +   G + + M+      DV  + +++ GL   GK  +A   FE    KG 
Sbjct: 458 LKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGM 517

Query: 415 SPNVRSYTIMIWKFCKQNAA 434
            P   +  +++ +  K+N A
Sbjct: 518 VPRDSTCKMLVDELEKKNMA 537


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 34/383 (8%)

Query: 221 FRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGLL 277
            R + RP  A +FF WAG++ G+ H+  +YN ++ IL ++  QF T     + +      
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSP 60

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ TFKI +     A +  +A+     ++++     V   N L+  L +   P +A  LF
Sbjct: 61  NLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLF 120

Query: 338 DKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK--PDVVAHNIMLE-GL 393
           + ++  R  P++ TY  ++ G C+  NL +A  +  EMI +G K  PD+V +N ++  G+
Sbjct: 121 ENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGI 180

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
            K G   +A+++ + MK  GP+P+V +Y  +I   C     V                  
Sbjct: 181 CKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAA--------------- 225

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           ++LK M    C PD +T+N L+       M   A+ + +EM R    P + TY +++   
Sbjct: 226 EILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGL 282

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK---------YLEEM 564
            + G  ++   + +E++R+G  PD  +YT L+ GL       EA+K          L EM
Sbjct: 283 CRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEM 342

Query: 565 LEKGMKAPVLDYNKFAADLSRAG 587
           +   M  P+  YN     L + G
Sbjct: 343 VSINMVPPLFTYNIVLGGLIKDG 365



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 27/314 (8%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
           +K  V + N LL+ L +S        ++  L H   +PNL T+ +L+ G C+      A 
Sbjct: 23  YKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRAL 82

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
                + +    PDV   N ++ GL K G    A+KLFE M++   +P++ +Y  +I   
Sbjct: 83  EFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGL 142

Query: 429 CKQ----------------------NAAVYTCLI-TGFGNRRRMDIVYDLLKEMEERGCP 465
           CK                       +   Y  LI  G      ++   ++L  M+  G  
Sbjct: 143 CKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPA 202

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN++I  + +     EA  I K M  S   P + T+N ++  + + G      +V
Sbjct: 203 PDVITYNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEV 259

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            +EM R    PD  +YT+L+ GL    +   A+  LEE++ +G    V+ Y      L +
Sbjct: 260 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 319

Query: 586 AGRSYVLDELAQKM 599
           +G      +L ++M
Sbjct: 320 SGEIEEAHKLVKEM 333



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 152/375 (40%), Gaps = 35/375 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM---GEKGLLSMETFKIAMNA-FAAAKERKKAVAIF 302
           TYN+++S L ++   E    +LEEM   G K    + T+   +NA      + ++A+ I 
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEIL 193

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
           + M        V T N ++  L  +    EA  +   +    +P+L T+  LL G+C+  
Sbjct: 194 DGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS--CSPDLVTFNTLLDGFCKAG 251

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            L  A  V  EM  +   PDV+ + I++ GL ++G+   A  L E +  +G  P+V +YT
Sbjct: 252 MLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT 311

Query: 423 IMIWKFCKQNAA-----------------------------VYTCLITGFGNRRRMDIVY 453
            ++   CK                                  Y  ++ G      +    
Sbjct: 312 SLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAV 371

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L+ ++  RG  PD +TYN LI  +       EA  +  EM   G  P   T   ++   
Sbjct: 372 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGL 431

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  +    +  EM R+   P+   YT LI GL   DR  +A   L+ M  +G+    
Sbjct: 432 CRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDD 491

Query: 574 LDYNKFAADLSRAGR 588
             Y K    +   GR
Sbjct: 492 FAYRKLIVSMIHGGR 506



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 18/237 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+K DV ++N +L+ L+K G +    K+++ +   G SPN+ ++ I+I   CK   A   
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                           + L+ ++E    PD   +N LI  +     PD+AV++++ M  S
Sbjct: 82  ---------------LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESS 126

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG--CCPDDNSYTVLIGGLISQDRS- 554
              P I TYN ++    ++GN E  R++ +EMIRRG    PD  +Y  LI   I +D   
Sbjct: 127 RVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDV 186

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
            EA + L+ M   G    V+ YN     L  AGR     E+ + M  S      N L
Sbjct: 187 EEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTL 243



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 140/336 (41%), Gaps = 34/336 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G A +  TYNS++  L  A +      +L+ M       + TF   ++ F  A    +A+
Sbjct: 200 GPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSP--DLVTFNTLLDGFCKAGMLPRAL 257

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGW 358
            + E M +      V T   L+  L R    + A  L +++ +  + P++  YT L+ G 
Sbjct: 258 EVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 317

Query: 359 CRVKNLMEAGR---------VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           C+   + EA +         +  EM+     P +  +NI+L GL+K G  S A+ L   +
Sbjct: 318 CKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDL 377

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTC--------------------LITGFGNRRRM 449
            A+G  P+V +Y  +I   CK N     C                    ++ G     R+
Sbjct: 378 VARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRV 437

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           D  + L+ EM  +   P+ + Y +LI  L K  +M D+A  +   M   G       Y  
Sbjct: 438 DDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM-DDACVVLDAMRGQGVALDDFAYRK 496

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           ++ S    G       ++DEM+ RG  PD ++   L
Sbjct: 497 LIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 26/285 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY  +++ L R  Q +    +LEE+  +G +  +  +   ++    + E ++A  + + M
Sbjct: 274 TYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 333

Query: 306 NKYKFKAGVDTIN---------CLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +  +  A + +IN          +L  L +   + K   L+ D +   + P++ TY  L+
Sbjct: 334 SAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 393

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   + EA  + +EM   G  P+ V    ++ GL ++G+  DA  L   M  K  +
Sbjct: 394 DGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA 453

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV  YT +I   CK +               RMD    +L  M  +G   D   Y  LI
Sbjct: 454 PNVVVYTSLIDGLCKSD---------------RMDDACVVLDAMRGQGVALDDFAYRKLI 498

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             M       EA+ +Y EMV  GF P   T   + ++      +E
Sbjct: 499 VSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE 543


>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 481

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 198/432 (45%), Gaps = 27/432 (6%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
            +ME+ L   GINL+ +++ +VL+        A  FF WAG + G  H   ++N M+ +L
Sbjct: 52  HDMESALSSTGINLTCDIIHEVLKLSYSNPASAVEFFRWAG-RSG-THTPYSWNLMVDLL 109

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+ + FE M   +  M ++ +LSM TF     ++  A    +A+  F++M+KY  +  V 
Sbjct: 110 GKNQLFEAMWDAIRSMKQENVLSMATFASVFGSYCKAGSFSEAIMSFDIMDKYGIQQDVI 169

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
            +N LL  +        +A   FD++K +  P+  TY +LL GW +  N  +A  ++ EM
Sbjct: 170 AVNSLLSAICNEDNQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEKEGNAAKAKNIFGEM 229

Query: 375 -IDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT---------- 422
            I  G+ P+ + A+N  L  L++  +  DA     +MK KG  P ++ Y+          
Sbjct: 230 VIHVGWSPENMPAYNAFLNLLVRESQTDDAFDFLRLMKEKGCLPGLKFYSDALDMLLKRN 289

Query: 423 ----------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                     IM+      N  +Y  +I    N   +D  + L  +M   G  PD LTY 
Sbjct: 290 DVLHAVPMWDIMVDTGLMPNLLMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPDFLTYK 349

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            + + +   K   +A   + EM+++   PT       +  +    + EM  ++W+ M+  
Sbjct: 350 MIFRCLVKNKKVSQAASFFHEMIKNENPPTHLDCAAAITMFMGGDDPEMAIEIWNYMVDD 409

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY-- 590
              P D S   L+ GL +  R  E  ++ E+ML++ +        K  A   + GRS   
Sbjct: 410 QELPLDESANALLVGLGNLGRLSEVSRFAEDMLDRRINIHESTMAKLKASFYKEGRSSRD 469

Query: 591 VLDELAQKMRFS 602
             D L++K + S
Sbjct: 470 RFDSLSRKWKAS 481


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 192/414 (46%), Gaps = 33/414 (7%)

Query: 209 LSHNLVVDVLERFRHARRPA---FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           LS+N ++D + R + + + A   F+    +G  P    N  TYN ++     A   E  +
Sbjct: 168 LSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSP----NVYTYNILIRGFCTAGNLEMGL 223

Query: 266 SMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
               EM   G L ++ T+   ++A+   ++  +A  +  LM        + + N ++  L
Sbjct: 224 XFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGL 283

Query: 325 GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R    KE   + +++ K R+ P+  T+  L+ G+C V N  +A  +  EM+  G  P+V
Sbjct: 284 CREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNV 343

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           V +  ++  + K G  + A++  + M+ +G  PN R+YT                LI GF
Sbjct: 344 VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT---------------LIDGF 388

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             +  +   Y ++KEM E G  P  +TYNALI    I    ++A  + +EM+  GF P +
Sbjct: 389 SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV 448

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            +Y+ I+  + +    E   ++  EM+ +G  PD  +Y+ LI GL  Q R GE     +E
Sbjct: 449 VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQE 508

Query: 564 MLEKGMKAPVLDYNKFA------ADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           ML  G+    + Y           DL +A R +  DE+ QK  FS      NVL
Sbjct: 509 MLSLGLPPDEVTYTSLINAYCIEGDLDKALRLH--DEMIQK-GFSPDIVTYNVL 559



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 198/432 (45%), Gaps = 39/432 (9%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D   + R     AF+       K G   N  +YN +++ L R  Q +    +L
Sbjct: 239 VTYNTIIDAYCKLRKIGE-AFKLLRLMALK-GLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           EEM ++  +    TF   +N +       +A+ +   M K      V T   L+ ++ ++
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                A    D+++ R   PN  TYT L+ G+ +   L +A ++  EM++ GF P ++ +
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N ++ G   +G+  DA  L + M  +G  P+V SY+ +I  FC+                
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                + A Y+ LI G   +RR+  V DL +EM   G PPD +TY +LI    I+   D+
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+R++ EM++ GF P I TYN+++  + +    +  +++  +++     P++ +Y  LI 
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLID 596

Query: 547 ---------------GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
                          G   +    EA + LE ML+KG K     YN      S+ G    
Sbjct: 597 NCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEK 656

Query: 592 LDELAQKMRFSG 603
              L ++M  SG
Sbjct: 657 AYNLYKEMLHSG 668



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 18/363 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           GF     +YN+++  + R +Q  +    + +EM E G+  ++ T+ I +  F  A   + 
Sbjct: 162 GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEM 221

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
            +  F  M +      V T N +++   + +   EA  L   +  +   PNL +Y V++ 
Sbjct: 222 GLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVIN 281

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR   + E   +  EM  + + PD V  N ++ G   +G    A+ L   M   G SP
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSP 341

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           NV +YT +I   CK             GN  R     + L +M +RG  P+G TY  LI 
Sbjct: 342 NVVTYTTLINSMCKA------------GNLNR---AMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               Q    +A +I KEMV +GF PTI TYN ++  +   G  E    +  EMI RG  P
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY+ +I G        +A++   EM+ KG+   V  Y+     L +  R   + +L 
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506

Query: 597 QKM 599
           Q+M
Sbjct: 507 QEM 509



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 182/393 (46%), Gaps = 38/393 (9%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--------GEKGLLSM 279
             +F  WA  +  F+   +     + IL R + ++T  S+ EE+        GE     +
Sbjct: 64  VLKFLDWARSQQFFSFQCKCL--ALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCL 121

Query: 280 E-----------TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           +            F + + + A      KA++I  L   Y F  GV + N +L+ + R+K
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK 181

Query: 329 LP-KEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              K A+ +F ++ +   +PN+ TY +L+ G+C   NL      + EM   G  P+VV +
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTY 241

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N +++   K+ K  +A KL  +M  KG +PN+ SY ++I   C++               
Sbjct: 242 NTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREG-------------- 287

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            +M    ++L+EM +R   PD +T+N LI          +A+ ++ EMV++G  P + TY
Sbjct: 288 -QMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY 346

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++ S  + GN     +  D+M  RG  P+  +YT LI G   Q    +AY+ ++EM+E
Sbjct: 347 TTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVE 406

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            G    ++ YN         GR      L Q+M
Sbjct: 407 NGFTPTIITYNALINGHCILGRMEDASGLLQEM 439



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 171/368 (46%), Gaps = 41/368 (11%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G + N  TY ++++ + +A      +  L++M ++GL  +  T+   ++ F+     K
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
           +A  I + M +  F   + T N L+     LGR  +   + LL + ++  F P++ +Y+ 
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGR--MEDASGLLQEMIERGFIPDVVSYST 453

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G+CR + L +A ++  EM+ KG  PDV  ++ +++GL K  +  +   LF+ M + G
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
             P+  +YT +I  +C +                    +   Y  LI GF  + R     
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 454 DLLKEMEERGCPPDGLTYNALI------------KLMK---IQKMPDEAVRIYKEMVRSG 498
            LL ++      P+ +TYN LI             LMK   ++ + +EA R+ + M++ G
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           +K     YN+I+  + + GN E    ++ EM+  G  P   +   L   L  + +  E  
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELN 693

Query: 559 KYLEEMLE 566
           + L+  L+
Sbjct: 694 QLLDYTLK 701



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 43/267 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + +  TY+S++  L + R+   +  + +EM   GL   E T+   +NA+    +  KA
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLG- 356
           + + + M +  F   + T N L+    +    KEA+ LL   L     PN  TY  L+  
Sbjct: 538 LRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN 597

Query: 357 --------------GWCRVKNLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
                         G+C +K LM EA RV   M+ KG+K +   +N+++ G  K+G    
Sbjct: 598 CNNLEFKSALALMKGFC-MKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEK 656

Query: 402 AIKLFEVMKAKGPSPNVRSYTIM---------------------IWKFCKQNAAVYTCLI 440
           A  L++ M   G +P+  S TIM                       K C+   A    ++
Sbjct: 657 AYNLYKEMLHSGFAPH--SVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVL 714

Query: 441 TGFGNRR-RMDIVYDLLKEMEERGCPP 466
            G  ++   MD V+++LK+M   G  P
Sbjct: 715 IGINSKEGNMDAVFNVLKDMALSGLLP 741


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 182/379 (48%), Gaps = 22/379 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            +  ++ IL  + +FE    + +++ +KG  L    + + +  F  + +   A+ +F  M
Sbjct: 67  AFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREM 126

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +    T   L+  LG++   +EA+  FD +  R  TPN+ TY +L+  + +V  L
Sbjct: 127 KIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQL 186

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  ++ EM  +GF+P VV +NI+L+ L   G+   A KLF  M   G SP+  +Y+ +
Sbjct: 187 DMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTL 246

Query: 425 IWKFCK----------------QNAAV----YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +    K                +  AV    Y  L+        MD V+ L+KEM  +G 
Sbjct: 247 VNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGF 306

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  ++N ++  +     PD A  ++  MV SG KP + +YN+++ SY + G+    R+
Sbjct: 307 HPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQ 366

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + +EM+  G  P+  +Y  LI  L +  +  EA+  LEEM   G +  V+ YN+    L 
Sbjct: 367 MLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLG 426

Query: 585 RAGRSYVLDELAQKMRFSG 603
           + G +     L Q+M+  G
Sbjct: 427 KRGENQRAARLFQQMKDKG 445



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 177/395 (44%), Gaps = 26/395 (6%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMN 287
           FR     G +P    +  TY  +++ LG+A + +   S  + M E+GL  ++ T+ + M+
Sbjct: 123 FREMKIKGSEP----DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMD 178

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTP 346
           AF    +   A+ +F  M +  F+  V T N LL+ L  +     A+ LF K+     +P
Sbjct: 179 AFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSP 238

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +  TY+ L+ G  +   + EA +V+ EM+D+G   D+V +N +L  L K G      KL 
Sbjct: 239 DSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLM 298

Query: 407 EVMKAKGPSPNVRSYTI--------------------MIWKFCKQNAAVYTCLITGFGNR 446
           + M  KG  P+  S+                      M+   CK +   Y  LI  +   
Sbjct: 299 KEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARF 358

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
                   +L+EM E G  P+  TYN+LI  +      DEA  + +EM  +G +P + TY
Sbjct: 359 GDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTY 418

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N +M    + G  +   +++ +M  +G  PD  SY V I GL   DR  EA    ++M  
Sbjct: 419 NRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKA 478

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
            G       Y        RAG + +  +L  + +F
Sbjct: 479 VGCPVDKAMYRILIRAAHRAGDTELEAQLKHESQF 513



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 16/274 (5%)

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           +T+  L+   GR     +A  LF++ +    +P +  +T L+           A  V+ +
Sbjct: 31  NTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKK 90

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           ++ KG + D  A+N+++    + G+   A+++F  MK KG  P+   YT           
Sbjct: 91  LVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPD--EYT----------- 137

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  L+   G   R+         M ERG  P+  TYN L+   +     D A+ ++ E
Sbjct: 138 --YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAE 195

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M R GF+P++ TYN+++ +    G     RK++ +M   GC PD  +Y+ L+ GL    R
Sbjct: 196 MKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGR 255

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             EA+K   EM+++G+   +++YN   A L++AG
Sbjct: 256 VEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAG 289



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 151/318 (47%), Gaps = 25/318 (7%)

Query: 209 LSHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           +++N+++D L    R   AR+    F    GD  G + +S TY+++++ LG++ + E   
Sbjct: 206 VTYNILLDALCSAGRVGAARK---LFHKMTGD--GCSPDSYTYSTLVNGLGKSGRVEEAH 260

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
            +  EM ++G+ + +  +   +   A A    +   + + M++  F     + N +++ L
Sbjct: 261 KVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDAL 320

Query: 325 GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           G++  P  A+ +F ++ +    P+L +Y +L+  + R  +  +A ++  EM++ GF P+ 
Sbjct: 321 GKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPET 380

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             +N ++  L   G+  +A  + E M+  G               C+ +   Y  L+   
Sbjct: 381 KTYNSLIHWLATDGQVDEAFAVLEEMETAG---------------CRPDVVTYNRLMDML 425

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G R        L ++M+++G  PD L+Y   I  +      DEA+ ++K+M   G     
Sbjct: 426 GKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDK 485

Query: 504 HTYNMIMKSYFQTGNYEM 521
             Y +++++  + G+ E+
Sbjct: 486 AMYRILIRAAHRAGDTEL 503



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 22/253 (8%)

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKG--FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           V+L  W  +  L     +  EM+ +G   +P+ +   I   G  +  K  DA  LF   +
Sbjct: 3   VVLASWGILDPLET---LLKEMVAEGRPLRPNTLVKLITAYG--RGNKSGDAFDLFNQAE 57

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
           +   SP V ++T +I             ++   G   R ++VY   K++ ++GC  D   
Sbjct: 58  SFACSPTVHAFTKLI------------DILVNSGEFERAELVY---KKLVQKGCQLDRFA 102

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN LI+        D A+ +++EM   G +P  +TY  ++ +  + G  +  R  +D M+
Sbjct: 103 YNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAML 162

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
            RG  P+  +Y +L+       +   A     EM  +G +  V+ YN     L  AGR  
Sbjct: 163 ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVG 222

Query: 591 VLDELAQKMRFSG 603
              +L  KM   G
Sbjct: 223 AARKLFHKMTGDG 235


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 34/388 (8%)

Query: 193 SLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-RP--AFRFFCWAGDKPGFAHNSRTYN 249
           +L   ++  L   GI+LS +L+  VL+R R +   P     F+ +AG + GF H+S + +
Sbjct: 52  NLQGELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYAGARRGFYHSSFSLD 111

Query: 250 SMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +M+ ILGR R+F+ +  +L E   K   L+S  T ++ +   A     ++ V  F     
Sbjct: 112 TMLYILGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESF----- 166

Query: 308 YKFKAGV----DT--INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           +KFK  V    DT   N LL  L + K   +A+ ++  LKH+F P+L T+ +LL GW   
Sbjct: 167 WKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGW--- 223

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K+  EA   + EM  KG KPDVV +N +++   K  +   A KL + M+ +  +P+V   
Sbjct: 224 KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDV--- 280

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                         YT +I G G   + D   ++LKEM+E GC PD   YNA I+   I 
Sbjct: 281 ------------ITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNYCIA 328

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +   +A ++  EMV+ G  P   TYN+  +      +     ++++ M+  GC P+  S 
Sbjct: 329 RRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYERMLGNGCLPNTQSC 388

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             LI      ++   A +  E+M+ KG 
Sbjct: 389 MFLIKMFKRHEKVDMAMRLWEDMVVKGF 416



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 36/298 (12%)

Query: 316 TINCLLENLGRS-KLPKEAQLLFD-KLKHRFTPNLTTYTVLLG---GWCRVKNLMEAGRV 370
           +++ +L  LGR+ K  +  ++L + K K R   +  T  V+LG     C V+  +E+   
Sbjct: 109 SLDTMLYILGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWK 168

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--WKF 428
           +  ++   F  D    N +L  L +    +DA  ++  +K +   P+++++ I++  WK 
Sbjct: 169 FKRLVPDFF--DTACFNALLRTLCQEKSMTDARNVYHSLKHQF-QPDLQTFNILLSGWKS 225

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
            ++  A +                     EM+ +G  PD +TYN+LI +    +  ++A 
Sbjct: 226 SEEAEAFFE--------------------EMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 265

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++  +M      P + TY  I+      G  +  R+V  EM   GC PD  +Y   I   
Sbjct: 266 KLIDKMREEDETPDVITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNY 325

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVLDELAQKMRFSG 603
               R G+A K ++EM++KG+      YN F   LS A   GRS+   EL ++M  +G
Sbjct: 326 CIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSW---ELYERMLGNG 380


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 192/414 (46%), Gaps = 33/414 (7%)

Query: 209 LSHNLVVDVLERFRHARRPA---FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           LS+N ++D + R + + + A   F+    +G  P    N  TYN ++     A   E  +
Sbjct: 168 LSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSP----NVYTYNILIRGFCTAGNLEMGL 223

Query: 266 SMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
               EM   G L ++ T+   ++A+   ++  +A  +  LM        + + N ++  L
Sbjct: 224 FFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGL 283

Query: 325 GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R    KE   + +++ K R+ P+  T+  L+ G+C V N  +A  +  EM+  G  P+V
Sbjct: 284 CREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNV 343

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           V +  ++  + K G  + A++  + M+ +G  PN R+YT                LI GF
Sbjct: 344 VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT---------------LIDGF 388

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             +  +   Y ++KEM E G  P  +TYNALI    I    ++A  + +EM+  GF P +
Sbjct: 389 SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV 448

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            +Y+ I+  + +    E   ++  EM+ +G  PD  +Y+ LI GL  Q R GE     +E
Sbjct: 449 VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQE 508

Query: 564 MLEKGMKAPVLDYNKFA------ADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           ML  G+    + Y           DL +A R +  DE+ QK  FS      NVL
Sbjct: 509 MLSLGLPPDEVTYTSLINAYCIEGDLDKALRLH--DEMIQK-GFSPDIVTYNVL 559



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 198/432 (45%), Gaps = 39/432 (9%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D   + R     AF+       K G   N  +YN +++ L R  Q +    +L
Sbjct: 239 VTYNTIIDAYCKLRKIGE-AFKLLRLMALK-GLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           EEM ++  +    TF   +N +       +A+ +   M K      V T   L+ ++ ++
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                A    D+++ R   PN  TYT L+ G+ +   L +A ++  EM++ GF P ++ +
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N ++ G   +G+  DA  L + M  +G  P+V SY+ +I  FC+                
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                + A Y+ LI G   +RR+  V DL +EM   G PPD +TY +LI    I+   D+
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+R++ EM++ GF P I TYN+++  + +    +  +++  +++     P++ +Y  LI 
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLID 596

Query: 547 ---------------GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
                          G   +    EA + LE ML+KG K     YN      S+ G    
Sbjct: 597 NCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEK 656

Query: 592 LDELAQKMRFSG 603
              L ++M  SG
Sbjct: 657 AYNLYKEMLHSG 668



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 18/363 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           GF     +YN+++  + R +Q  +    + +EM E G+  ++ T+ I +  F  A   + 
Sbjct: 162 GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEM 221

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
            +  F  M +      V T N +++   + +   EA  L   +  +   PNL +Y V++ 
Sbjct: 222 GLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVIN 281

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR   + E   +  EM  + + PD V  N ++ G   +G    A+ L   M   G SP
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSP 341

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           NV +YT +I   CK             GN  R     + L +M +RG  P+G TY  LI 
Sbjct: 342 NVVTYTTLINSMCKA------------GNLNR---AMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               Q    +A +I KEMV +GF PTI TYN ++  +   G  E    +  EMI RG  P
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY+ +I G        +A++   EM+ KG+   V  Y+     L +  R   + +L 
Sbjct: 447 DVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506

Query: 597 QKM 599
           Q+M
Sbjct: 507 QEM 509



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 182/393 (46%), Gaps = 38/393 (9%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--------GEKGLLSM 279
             +F  WA  +  F+   +     + IL R + ++T  S+ EE+        GE     +
Sbjct: 64  VLKFLDWARSQQFFSFQCKCL--ALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCL 121

Query: 280 E-----------TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           +            F + + + A      KA++I  L   Y F  GV + N +L+ + R+K
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK 181

Query: 329 LP-KEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              K A+ +F ++ +   +PN+ TY +L+ G+C   NL      + EM   G  P+VV +
Sbjct: 182 QSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTY 241

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N +++   K+ K  +A KL  +M  KG +PN+ SY ++I   C++               
Sbjct: 242 NTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREG-------------- 287

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            +M    ++L+EM +R   PD +T+N LI          +A+ ++ EMV++G  P + TY
Sbjct: 288 -QMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY 346

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++ S  + GN     +  D+M  RG  P+  +YT LI G   Q    +AY+ ++EM+E
Sbjct: 347 TTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVE 406

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            G    ++ YN         GR      L Q+M
Sbjct: 407 NGFTPTIITYNALINGHCILGRMEDASGLLQEM 439



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 171/368 (46%), Gaps = 41/368 (11%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G + N  TY ++++ + +A      +  L++M ++GL  +  T+   ++ F+     K
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
           +A  I + M +  F   + T N L+     LGR  +   + LL + ++  F P++ +Y+ 
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGR--MEDASGLLQEMIERGFIPDVVSYST 453

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G+CR + L +A ++  EM+ KG  PDV  ++ +++GL K  +  +   LF+ M + G
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
             P+  +YT +I  +C +                    +   Y  LI GF  + R     
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 454 DLLKEMEERGCPPDGLTYNALI------------KLMK---IQKMPDEAVRIYKEMVRSG 498
            LL ++      P+ +TYN LI             LMK   ++ + +EA R+ + M++ G
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           +K     YN+I+  + + GN E    ++ EM+  G  P   +   L   L  + +  E  
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELN 693

Query: 559 KYLEEMLE 566
           + L+  L+
Sbjct: 694 QLLDYTLK 701



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 43/267 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + +  TY+S++  L + R+   +  + +EM   GL   E T+   +NA+    +  KA
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLG- 356
           + + + M +  F   + T N L+    +    KEA+ LL   L     PN  TY  L+  
Sbjct: 538 LRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN 597

Query: 357 --------------GWCRVKNLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
                         G+C +K LM EA RV   M+ KG+K +   +N+++ G  K+G    
Sbjct: 598 CNNLEFKSALALMKGFC-MKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEK 656

Query: 402 AIKLFEVMKAKGPSPNVRSYTIM---------------------IWKFCKQNAAVYTCLI 440
           A  L++ M   G +P+  S TIM                       K C+   A    ++
Sbjct: 657 AYNLYKEMLHSGFAPH--SVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVL 714

Query: 441 TGFGNRR-RMDIVYDLLKEMEERGCPP 466
            G  ++   MD V+++LK+M   G  P
Sbjct: 715 IGINSKEGNMDAVFNVLKDMALSGLLP 741


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 200/452 (44%), Gaps = 70/452 (15%)

Query: 222 RHARRPAFRFFCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           R+  R   + FC  G               G + +   YN ++    +  + +    + E
Sbjct: 8   RYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYE 67

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS- 327
           EM   GL  S+ T+   +NAF    + K+A+ +F+ M +  F+  V T + ++  L ++ 
Sbjct: 68  EMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTG 127

Query: 328 KLPKEAQLLFDKLKHR------------------------------------FTPNLTTY 351
           K+ +  ++LF K+  R                                    + P+  TY
Sbjct: 128 KVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITY 187

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
             +L G CR+  + EA + ++ M  +G+ PDVVA+N +L+ L K GK  +A+KLF+ + A
Sbjct: 188 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIA 247

Query: 412 KGPSPNVRSYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           KG  P+  +Y                      M+   C  N A Y+ +++G    +++D 
Sbjct: 248 KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDD 307

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            + +L+EM + G  PD +TYN L+  +    + D+A  ++  MV +G  P I +Y++++ 
Sbjct: 308 AHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN 367

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              +T      R ++D MI R   PD  ++ +L+ GL    +  EA   L++M   G   
Sbjct: 368 GLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAP 427

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + YN     L + GR    D L Q M+  G
Sbjct: 428 DYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 24/342 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N+  YN++++ L +    E    +LEEM  KG +    T+   ++      +  +A
Sbjct: 144 GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEA 203

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
              F+ M    +   V   N LL+ L +     EA  LF D +   + P+  TY  +L G
Sbjct: 204 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLG 263

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R  N+ EA  ++ +M+  G  P+   ++I+L G  +  K  DA K+ E M   G  P+
Sbjct: 264 LARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPD 323

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
           V +Y I++   CK N                +D  ++L   M + GC PD ++Y+ ++  
Sbjct: 324 VVTYNILLDGLCKTNL---------------VDKAHELFSTMVDNGCAPDIVSYSVVLNG 368

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L K  K+ D  V ++  M+     P + T+N++M    + G  +  + + D+M   GC P
Sbjct: 369 LCKTNKVHDARV-LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAP 427

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-----MKAPV 573
           D  +Y  L+ GL  Q R  +A +  + M EKG      KAP+
Sbjct: 428 DYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCFKAPL 469



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 21/280 (7%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +PN  T+ V+L  +C+   L +  +++ +M+D G  PD + +NI+++G  K G+  +A +
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           L+E M + G  P++ +Y  ++  FCK+                    +   Y+ +I+G  
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 445 NRRRMDIVYDLL-KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
              ++    ++L  +M ERGC  + + YNALI  +   +  + A ++ +EM   G+ P  
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TYN I+    + G     ++ +D M  RG  PD  +Y  L+  L  + ++ EA K  ++
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD 244

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++ KG     + YN     L+R       +E+ +KM  SG
Sbjct: 245 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG 284



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           R C P+  T+  ++K    Q    +  +++++M+ +G  P    YN+++  Y + G  + 
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             ++++EM+  G  P   +Y  L+     + +  EA +  + M EKG +  V+ Y+   +
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 582 DLSRAGR-SYVLDELAQKM 599
            L + G+ +  L+ L  KM
Sbjct: 122 GLCKTGKVTEALEMLFHKM 140


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 185/400 (46%), Gaps = 18/400 (4%)

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
           D  GI L+ N+V  +L +F    + A  FF WA  +  + H +   N M+ +LG+ RQ +
Sbjct: 40  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 99

Query: 263 TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
            M  +L +M  +GL+++ET   ++   A A+  K  V +F+ +     +   +T+N LL+
Sbjct: 100 QMWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 159

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            L + +  + A+ +F  L     P+  T+ + + GWC ++ + EA     EM  +GF P 
Sbjct: 160 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 219

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V+ +  +LE   K        ++ + M ++G  PNV +YT+               ++T 
Sbjct: 220 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM---------------IMTS 264

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK-EMVRSGFKP 501
                R +    +   M+  GC PD L YN+LI L+       EA ++++ EM  +G   
Sbjct: 265 LAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSH 324

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY- 560
            + TYN ++  +   G  +    V  EM  + C PD  SY  L+   +S+    +  ++ 
Sbjct: 325 NLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHL 384

Query: 561 LEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
           L E+  K      LD Y      L R G +    +L  +M
Sbjct: 385 LSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEM 424



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 2/160 (1%)

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G RR  D+V  L  ++E+ G   +  T N L+ ++  ++  + A  ++  ++     P  
Sbjct: 128 GARRWKDVVL-LFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFA-VLSPHIPPDA 185

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           +T+N+ +  +      +      +EM RRG  P   +YT ++     Q      Y+ L+ 
Sbjct: 186 YTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDS 245

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M  +G    V+ Y      L++  R      ++ +M+ SG
Sbjct: 246 MGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSG 285



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 219 ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEKGL- 276
           ERF  A   + R    +G KP    ++  YNS++++LG++   FE       EM   G+ 
Sbjct: 269 ERFEEALSVSHRMKS-SGCKP----DTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVS 323

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQL 335
            ++ T+   ++ F        A+ + + M     K  + +   LL   L R       + 
Sbjct: 324 HNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRH 383

Query: 336 LFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           L  +L  KH    +L TYT+L+ G CRV + + A ++++EM+     P
Sbjct: 384 LLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAP 431


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+N ++  L +A Q    + MLEEM   GL   E TF   M  F    +   A
Sbjct: 153 GIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGA 212

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + + + M  Y       ++  L+    +    +EA + + +  +  F+P+  T+  L+ G
Sbjct: 213 LKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNG 272

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+ N+ +A  + + MI+KGF PDV  +N ++ G+ K+G+   AI++ + M  +  SPN
Sbjct: 273 FCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPN 332

Query: 418 VRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+N                       +  LI G    +  DI  ++ +
Sbjct: 333 TVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFE 392

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ +GC PD  TY+ LI  +  ++   EA+ + KEM  SG       YN ++    ++ 
Sbjct: 393 EMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSR 452

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E   +++D+M   G      +Y  LI GL    R  EA + +++M+ +G+K     YN
Sbjct: 453 RIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYN 512

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  R G      ++ Q M  +G
Sbjct: 513 SLLTYFCRVGDIEKAGDIVQTMASNG 538



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 140/318 (44%), Gaps = 21/318 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDK 339
           TF   +N F        A+ I + M +  F   V T N L+  + +  +  K  ++L   
Sbjct: 265 TFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQM 324

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +    +PN  TY  L+   C+   +  A  +   ++ KG  PDV   N +++GL     +
Sbjct: 325 ILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQ 384

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCL 439
             A+++FE MK KG  P+  +Y+I+I   C                     +NA VY  L
Sbjct: 385 DIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTL 444

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G    RR++   ++  +ME  G     +TYN LI  +   K  +EA ++  +M+  G 
Sbjct: 445 IDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGL 504

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TYN ++  + + G+ E    +   M   GC PD  +Y  LIGGL    R   A K
Sbjct: 505 KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 560 YLEEMLEKGMKAPVLDYN 577
            L  +  KG+      YN
Sbjct: 565 LLRSVQMKGIVLTPHAYN 582



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 175/401 (43%), Gaps = 54/401 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N+ T+ +++       + E ++ +LE E+G K       + IA+NA     + K  
Sbjct: 85  GSIPNATTFATLIQSFTNFHEIENLLKILENELGFKP--DTNFYNIALNALVEDNKLKLV 142

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYT----- 352
             +   M        V T N L++ L ++   + A L+ +++  H   P+  T+T     
Sbjct: 143 EMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQG 202

Query: 353 ------------------------------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                                         VL+ G+C+   + EA R   E+ ++GF PD
Sbjct: 203 FIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPD 262

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
            V  N ++ G  +IG  +DA+ + + M  KG  P+V +Y  +I   CK            
Sbjct: 263 QVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLG---------- 312

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                  +   ++L++M  R C P+ +TYN LI  +  +   + A  + + +V  G  P 
Sbjct: 313 -----EFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPD 367

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + T+N +++    + N ++  ++++EM  +GC PD+ +Y++LI  L  + R  EA   L+
Sbjct: 368 VCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLK 427

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EM   G     + YN     L ++ R    +E+  +M   G
Sbjct: 428 EMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLG 468



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 179/394 (45%), Gaps = 25/394 (6%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGIN-LSHNLVVDVL--ERFRHARRPAFRFFCWAGD 237
           I  +CK+ +   +++   + +L EC  N +++N ++  L  E    A     R     G 
Sbjct: 305 ISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGL 364

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
            P       T+N+++  L  ++  +  + M EEM  KG    E T+ I +++    +  K
Sbjct: 365 LPDVC----TFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ + + M            N L++ L +S+  ++A+ +FD+++    + +  TY  L+
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLI 480

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+ K + EA ++ ++MI +G KPD   +N +L    ++G    A  + + M + G  
Sbjct: 481 DGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCE 540

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ +Y  +I   C+                 R+D+   LL+ ++ +G       YN +I
Sbjct: 541 PDIFTYGTLIGGLCRAG---------------RVDVASKLLRSVQMKGIVLTPHAYNPVI 585

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRRGC 534
           + + ++K   E +R+++EM+     P   T+ ++ +     G   +       EM+ +G 
Sbjct: 586 QALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGI 645

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            P+  S+  L  GL S        + +  ++EK 
Sbjct: 646 LPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKA 679



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 21/216 (9%)

Query: 393 LLKIGKRS--DAIK-LFEVMKAKGPSPNVRSYTIMIWKFC------------------KQ 431
           LL++ + S  D+I  L + +K+ G  PN  ++  +I  F                   K 
Sbjct: 62  LLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILENELGFKP 121

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +   Y   +       ++ +V  L  +M   G   D  T+N LIK +        A+ + 
Sbjct: 122 DTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILML 181

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           +EM   G KP   T+  +M+ + + G+     K+  +M+  GC   + S  VL+ G   +
Sbjct: 182 EEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKE 241

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            R  EA +++ E+ E+G     + +N       R G
Sbjct: 242 GRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIG 277


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 185/400 (46%), Gaps = 18/400 (4%)

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
           D  GI L+ N+V  +L +F    + A  FF WA  +  + H +   N M+ +LG+ RQ +
Sbjct: 28  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 87

Query: 263 TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
            M  +L +M  +GL+++ET   ++   A A+  K  V +F+ +     +   +T+N LL+
Sbjct: 88  QMWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 147

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            L + +  + A+ +F  L     P+  T+ + + GWC ++ + EA     EM  +GF P 
Sbjct: 148 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 207

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V+ +  +LE   K        ++ + M ++G  PNV +YT+               ++T 
Sbjct: 208 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM---------------IMTS 252

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK-EMVRSGFKP 501
                R +    +   M+  GC PD L YN+LI L+       EA ++++ EM  +G   
Sbjct: 253 LAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSH 312

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY- 560
            + TYN ++  +   G  +    V  EM  + C PD  SY  L+   +S+    +  ++ 
Sbjct: 313 NLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHL 372

Query: 561 LEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
           L E+  K      LD Y      L R G +    +L  +M
Sbjct: 373 LSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEM 412



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 2/160 (1%)

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G RR  D+V  L  ++E+ G   +  T N L+ ++  ++  + A  ++  ++     P  
Sbjct: 116 GARRWKDVVL-LFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFA-VLSPHIPPDA 173

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           +T+N+ +  +      +      +EM RRG  P   +YT ++     Q      Y+ L+ 
Sbjct: 174 YTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDS 233

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M  +G    V+ Y      L++  R      ++ +M+ SG
Sbjct: 234 MGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSG 273



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 219 ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEKGL- 276
           ERF  A   + R    +G KP    ++  YNS++++LG++   FE       EM   G+ 
Sbjct: 257 ERFEEALSVSHRMKS-SGCKP----DTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVS 311

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQL 335
            ++ T+   ++ F        A+ + + M     K  + +   LL   L R       + 
Sbjct: 312 HNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRH 371

Query: 336 LFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           L  +L  KH    +L TYT+L+ G CRV + + A ++++EM+     P
Sbjct: 372 LLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAP 419


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 185/400 (46%), Gaps = 18/400 (4%)

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
           D  GI L+ N+V  +L +F    + A  FF WA  +  + H +   N M+ +LG+ RQ +
Sbjct: 74  DCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQID 133

Query: 263 TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
            M  +L +M  +GL+++ET   ++   A A+  K  V +F+ +     +   +T+N LL+
Sbjct: 134 QMWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLD 193

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            L + +  + A+ +F  L     P+  T+ + + GWC ++ + EA     EM  +GF P 
Sbjct: 194 VLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPS 253

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V+ +  +LE   K        ++ + M ++G  PNV +YT+               ++T 
Sbjct: 254 VITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM---------------IMTS 298

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK-EMVRSGFKP 501
                R +    +   M+  GC PD L YN+LI L+       EA ++++ EM  +G   
Sbjct: 299 LAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSH 358

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY- 560
            + TYN ++  +   G  +    V  EM  + C PD  SY  L+   +S+    +  ++ 
Sbjct: 359 NLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHL 418

Query: 561 LEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKM 599
           L E+  K      LD Y      L R G +    +L  +M
Sbjct: 419 LSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEM 458



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 2/160 (1%)

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G RR  D+V  L  ++E+ G   +  T N L+ ++  ++  + A  ++  ++     P  
Sbjct: 162 GARRWKDVVL-LFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFA-VLSPHIPPDA 219

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           +T+N+ +  +      +      +EM RRG  P   +YT ++     Q      Y+ L+ 
Sbjct: 220 YTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDS 279

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M  +G    V+ Y      L++  R      ++ +M+ SG
Sbjct: 280 MGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSG 319



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 219 ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEKGLL 277
           ERF  A   + R    +G KP    ++  YNS++++LG++   FE       EM   G+ 
Sbjct: 303 ERFEEALSVSHRMKS-SGCKP----DTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVS 357

Query: 278 -SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQL 335
            ++ T+   ++ F        A+ + + M     K  + +   LL   L R       + 
Sbjct: 358 HNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRH 417

Query: 336 LFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           L  +L  KH    +L TYT+L+ G CRV + + A ++++EM+     P
Sbjct: 418 LLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAP 465


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 181/376 (48%), Gaps = 20/376 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N    +S    L  A ++E   S++ EM  +G +    T+   +     A + + A
Sbjct: 443 GVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELA 502

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +    A V T   ++++  ++ L ++A+  F++++    TPN+ TYT L+  
Sbjct: 503 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA 562

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + + K +  A  ++  M+ +G  P++V ++ +++G  K G+   A ++FE M      P+
Sbjct: 563 YLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPD 622

Query: 418 VRSYTIMIWKFCKQ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           V  Y        KQ         N  +Y  L+ GF    R++    LL  M   GC P+ 
Sbjct: 623 VDMYF-------KQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQ 675

Query: 469 LTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           + Y+ALI  L K+ K+ DEA  +  EM   GF  T++TY+ ++  YF+    ++  KV  
Sbjct: 676 IVYDALIDGLCKVGKL-DEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 734

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +M+   C P+   YT +I GL    ++ EAYK ++ M EKG +  V+ Y        R G
Sbjct: 735 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIG 794

Query: 588 RSYVLDELAQKMRFSG 603
           +     EL ++M   G
Sbjct: 795 KIETCLELLERMGSKG 810



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 123/548 (22%), Positives = 226/548 (41%), Gaps = 72/548 (13%)

Query: 86  CSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLATNILDS--------N 137
           C L RSH     L+P S++L  L +V         +  LT   ++T   D         +
Sbjct: 8   CLLSRSHHP---LIPFSTNLSLLHRVF------TCSRYLTTRFMSTPPPDEMFGFDDPFS 58

Query: 138 CVNYRNVSSVTDDN---QDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSL 194
            +  R V  +T +     DS  +  GN    ++  +  +S+ D R I       D++F  
Sbjct: 59  PIESREVVDLTKEYSFLHDSLLD-SGNVDLHQVVPIITQSSIDARAIADAVSGGDDVFG- 116

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMM 252
               +  L +    LS +LV++VL   R   RP+    FF WAG + G+ H S  YN+++
Sbjct: 117 -SKSQKFLRQFREKLSESLVIEVL---RLIERPSAVISFFVWAGRQIGYKHTSPVYNALV 172

Query: 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA--VAIFEL--MNKY 308
            ++ R    +    +L+++ +      E F   +N       R  +  +A+ EL  +  +
Sbjct: 173 DLIVRDDDEKVPEELLQQIRDD---DKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDF 229

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW---CRVKNLM 365
           +F+    T NCL++   ++     A L+     HR    ++   + + G+   C   +L 
Sbjct: 230 RFRPSRSTYNCLIQAFLKADCLDSASLV-----HR---EMSLANLRMDGFTLRCYAYSLC 281

Query: 366 EAGRVWNE----MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + G+ W E    M  + F PD V +  ++ GL +     +A+     M+A    PNV +Y
Sbjct: 282 KVGK-WREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTY 340

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           +                L+ G  N++++     +L  M   GC P    +N+L+      
Sbjct: 341 ST---------------LLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTS 385

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIM------KSYFQTGNYEMGRKVWDEMIRRGCC 535
                A ++ K+MV+ G  P    YN+++      K        E+  K + EM+  G  
Sbjct: 386 GDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVV 445

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            +  + +     L S  +  +A+  + EM+ +G       Y+K    L  A +  +   L
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLL 505

Query: 596 AQKMRFSG 603
            ++M+  G
Sbjct: 506 FEEMKRGG 513



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N   Y +++    +  + E    +L+ M  +G    +  +   ++      +  +A  + 
Sbjct: 639 NVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 698

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
             M+++ F A + T + L++   + K    A  +  K L++   PN+  YT ++ G C+V
Sbjct: 699 AEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 758

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA ++   M +KG +P+VV +  M++G  +IGK    ++L E M +KG +PN  +Y
Sbjct: 759 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTY 818

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
            ++I   CK  A               +D+ ++LL+EM++   P     Y  +I+     
Sbjct: 819 RVLIDHCCKNGA---------------LDVAHNLLEEMKQTHWPTHAAGYRKVIE--GFN 861

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD--N 539
           K   E++ +  E+ +    P +  Y +++ +  +    EM  ++ +E+        D  +
Sbjct: 862 KEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSS 921

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +Y  LI  L   ++  +A++   EM +KG+
Sbjct: 922 TYNSLIESLCLANKVDKAFRLFSEMSKKGV 951



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 10/195 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY +M+   GR  + ET + +LE MG KG+  +  T+++ ++        
Sbjct: 772 EEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 831

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
             A  + E M +  +         ++E   +  +  E+  L D++    T P L+ Y +L
Sbjct: 832 DVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSLYRLL 889

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV----AHNIMLEGLLKIGKRSDAIKLFEVMK 410
           +    + + L  A R+  E+    F   +V     +N ++E L    K   A +LF  M 
Sbjct: 890 VDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMS 947

Query: 411 AKGPSPNVRSYTIMI 425
            KG  P ++++  +I
Sbjct: 948 KKGVIPEMQTFCSLI 962


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 17/328 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN +++ L R  + E    +L EM  KG      T+   +N +       +A
Sbjct: 268 GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M +      V T   L+  + ++     A   FD++  R   PN  TYT L+ G
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLING 387

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   + EA R+W+EMI  GF P +V +N +L G    G+  +AI L   M+ KG SP+
Sbjct: 388 FSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD 447

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY+ +I  FC+                + +D  + +  EM E+G  PD +TY++LI+ 
Sbjct: 448 VVSYSTIIAGFCRY---------------QELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  Q+  +EA  +++EM+     P   TY  ++  Y + G+      + DEMI++G  PD
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +Y VLI GL  Q R+ EA + L ++ 
Sbjct: 553 TVTYNVLINGLNKQARTREAKRLLLKLF 580



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 168/363 (46%), Gaps = 18/363 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVS-MLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           GF     +YN+++  + R R+       +  EM   G+ L++ ++ I +  F AA   + 
Sbjct: 162 GFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEM 221

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLG 356
            +  FE M + +    V T N ++    + K   EA +LL         PNL TY +++ 
Sbjct: 222 GLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVIN 281

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CRV  + E   V  EM  KGF PD V +N ++ G  K+G    A+ L   M   G  P
Sbjct: 282 GLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPP 341

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V +YT +I   CK             GN  R    +D   +M  RG  P+G+TY +LI 
Sbjct: 342 DVVTYTSLINTMCKA------------GNLNRAMEFFD---QMHVRGLRPNGVTYTSLIN 386

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               +   DEA RI+ EM+RSGF PTI TYN ++  +  +G  E    +   M  +G  P
Sbjct: 387 GFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSP 446

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY+ +I G         A++   EM+EKG+    + Y+     L    R     +L 
Sbjct: 447 DVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 597 QKM 599
           Q+M
Sbjct: 507 QEM 509



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 16/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSD-AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           GF P V+++N +L+ +++  K    A K++  M A G S NV SY I+I  FC       
Sbjct: 162 GFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAA----- 216

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                  GN   +++     +EME   C P+ +TYN +I      K  DEA ++ + M  
Sbjct: 217 -------GN---LEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGL 266

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P + TYNM++    + G  E    V  EM R+G  PD  +Y  L+ G        +
Sbjct: 267 EGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQ 326

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A     EML  G+   V+ Y      + +AG      E   +M   G
Sbjct: 327 ALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRG 373



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 2/296 (0%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + GF     TYN++++    + + E  + +L  M  KGL   + ++   +  F   +E  
Sbjct: 406 RSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELD 465

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A  +   M +        T + L++ L   +   EA  LF ++ ++   P+  TYT L+
Sbjct: 466 RAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLI 525

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+  +L EA  + +EMI KGF PD V +N+++ GL K  +  +A +L   +      
Sbjct: 526 NGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESI 585

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  +Y  +I             LI GF  +  M+    + + M +R   P+   YN +I
Sbjct: 586 PNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVII 645

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
                     +A ++YKEMV  GF P   T   ++K+ +  G  E    V  +++R
Sbjct: 646 HGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILR 701


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 180/395 (45%), Gaps = 22/395 (5%)

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIA 285
           PA  FF WA    GF H+ + YN M+ + G+ +QF     +++ M  + + +++ TF + 
Sbjct: 130 PALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSML 189

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
           +  +  A    +AV  F  M  Y   A +   + ++  L + +   EAQ  FD LKH+F 
Sbjct: 190 VRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHKFE 249

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++  YT L+ GWCR  ++ EA  V+ EM   G  P+V  ++I+++ L + G+ + A  +
Sbjct: 250 PDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDV 309

Query: 406 FEVMKAKGPSPN--------------------VRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           F  M   G +PN                    ++ Y  M    C  +   Y  LI     
Sbjct: 310 FAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCK 369

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +     +L  M +  C P+  ++N + + +   +  + A R++  M   G KP   T
Sbjct: 370 DDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVT 429

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN++M+ +    + +M  K+  EM      P+ N+Y  LI           AY +  EM+
Sbjct: 430 YNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMI 489

Query: 566 -EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            EK +K  +  Y     +L +AG+    +EL  KM
Sbjct: 490 DEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKM 524



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 114/261 (43%), Gaps = 18/261 (6%)

Query: 342 HRFTPNLTTYTVLLGGWCRVK-NLMEAGRVWN-EMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           H  +P +  Y +   G  R     + A   +N     +GF+     +N M++   K+ + 
Sbjct: 105 HSVSPAVVRYVIEKSGAVRHGIPFLPALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQF 164

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
             A  L ++MKA+     V ++++++ ++ +   A     +  F NR            M
Sbjct: 165 GLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEA--VHAF-NR------------M 209

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           E+ GC  D + ++ +I ++  ++   EA   +  + +  F+P +  Y  ++  + + G+ 
Sbjct: 210 EDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNL-KHKFEPDVIVYTSLVHGWCRAGDI 268

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                V+ EM   G  P+  +Y+++I  L    +   A+    EML+ G     + +N  
Sbjct: 269 SEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNL 328

Query: 580 AADLSRAGRSYVLDELAQKMR 600
                RAGR+  + ++  +M+
Sbjct: 329 IRVHLRAGRTEKVLQVYNQMK 349


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 182/405 (44%), Gaps = 57/405 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---------------------LS 278
           G   N  TYN+++S L R    +    +L+EM E+GL                     ++
Sbjct: 107 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 166

Query: 279 METFK-----------IAMNAFAAAKERK----KAVAIFELMNKYKFKAGVDTINCLLEN 323
           ++ F+           +A +   A   +     +A  +FE M +   +  V T   L++ 
Sbjct: 167 LKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDG 226

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +    +EAQ + + ++ R  TPN+ TY+ L+ G C+   + +A  V+  MI +G +P+
Sbjct: 227 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI----------------- 425
           VV +N ++ G         A+ L E M A G  P++ +Y  +I                 
Sbjct: 287 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFG 346

Query: 426 ---WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
               KFC  +   Y+CLI GF    R+D+   L  +M ++   PD +T++ L++      
Sbjct: 347 DMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 406

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           + D+A R+ +EMV S   P ++TY  ++  + + G     R+V   M +RGC P+  +YT
Sbjct: 407 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 466

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            LI       +   AYK LEEM+  G++  V+ Y          G
Sbjct: 467 ALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTG 511



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 168/354 (47%), Gaps = 19/354 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N  TYN +++   +  +      +L+EM E GL  ++ T+   ++ F    +  
Sbjct: 35  KKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVD 94

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +F  M +      + T N LL  L R+ L  EA  L D+++ R   P+  +Y  L+
Sbjct: 95  TAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLM 154

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   +  A +V+ +  +    PDVVA++ ++ GL K G+  +A KLFE M+     
Sbjct: 155 AGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCE 214

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V ++T ++   CK +               R+     +L+ ME+R C P+ +TY++LI
Sbjct: 215 PDVVTFTALMDGLCKGD---------------RLQEAQQVLETMEDRNCTPNVITYSSLI 259

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             L K  ++ D A  ++K M+  G +P + TYN ++  +  T   +    + +EM   GC
Sbjct: 260 DGLCKTGQVRD-AQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGC 318

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y  LI GL    R+ EA +   +M  K     V+ Y+       +  R
Sbjct: 319 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 372



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 18/328 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY+S++  L +  Q      + + M  +G+  ++ T+   ++ F        A+ + 
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLM 310

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRV 361
           E M        + T N L++ L ++    EA  LF  +K +F  P++ TY+ L+GG+C++
Sbjct: 311 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 370

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + +  A  ++++M+ +   PDVV  + ++EG    G   DA +L E M A   SP+V +Y
Sbjct: 371 ERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTY 430

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           T ++  FCK                 RM     +LK M +RGC P+ +TY ALI      
Sbjct: 431 TSLVDGFCKVG---------------RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 475

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNS 540
             P  A ++ +EMV +G +P + TY  ++  +  TG+ E  RK+ + + R   C  D  +
Sbjct: 476 GKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFA 535

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           Y V++ GL    R   A + LE + + G
Sbjct: 536 YRVMMDGLCRTGRMSAALELLEAIKQSG 563



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 15/242 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ T+T+++ G C+   L EA   + +M  KG  P+   +N+++ G  K+ K   A  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + MK  G +PNV +Y+ +I  FC+Q                ++D  Y L ++M E GC P
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQT---------------KVDTAYKLFRQMVENGCMP 110

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TYN L+  +    + DEA  +  EM   G +P   +Y+ +M    +TG  +M  KV+
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 170

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           ++     C PD  +Y+ LI GL    R  EA K  E+M E   +  V+ +      L + 
Sbjct: 171 EDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKG 230

Query: 587 GR 588
            R
Sbjct: 231 DR 232



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 148/341 (43%), Gaps = 21/341 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+ I ++    A    +A   F  M K        T N L+    +      A LL  ++
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           K     PN+ TY+ ++ G+CR   +  A +++ +M++ G  P++V +N +L GL + G  
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            +A +L + M+ +G  P+  SY  ++   CK                     +   Y+ L
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D    L ++M E  C PD +T+ AL+  +       EA ++ + M     
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY+ ++    +TG     ++V+  MI RG  P+  +Y  LI G    +    A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +EEM   G    ++ YN     L + GR+   + L   M+
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 349



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 15/219 (6%)

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           +V+   IM++GL K  +  +A   F  MK KG  PN  +Y ++I  FCK +         
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVH--------- 56

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                 ++   Y LLKEM+E G  P+ +TY+ +I     Q   D A +++++MV +G  P
Sbjct: 57  ------KVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMP 110

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TYN ++    + G  +   ++ DEM  RG  PD  SY  L+ GL    +   A K  
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 170

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           E+         V+ Y+   A L + GR     +L +KMR
Sbjct: 171 EDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMR 209



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 23/273 (8%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +  F   +    A  +F+ M K      V T + L+E    + L  +A+ L +++
Sbjct: 359 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 418

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                +P++ TYT L+ G+C+V  ++EA RV   M  +G +P+VV +  +++   + GK 
Sbjct: 419 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKP 478

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFC---------------------KQNAAVYTC 438
           + A KL E M   G  PNV +Y  +I  FC                     K +   Y  
Sbjct: 479 TVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRV 538

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS- 497
           ++ G     RM    +LL+ +++ G PP    Y ALI+ +   K   +A+ + +EM  S 
Sbjct: 539 MMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSR 598

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
             +P    Y  +++   + G +E    + DE++
Sbjct: 599 KSRPNAEAYEAVIQELAREGRHEEANALADELL 631



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           C  + +T+  +I  L K  ++P EA   + +M + G  P   TYN+++  + +       
Sbjct: 3   CEKNVITWTIMIDGLCKANRLP-EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +  EM   G  P+  +Y+ +I G   Q +   AYK   +M+E G    ++ YN   + 
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 121

Query: 583 LSRAG---RSY-VLDELAQKMRFSGKFEVSNVLARWAETTK 619
           L R G    +Y +LDE+ ++     KF    ++A   +T K
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 10/199 (5%)

Query: 220 RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-S 278
           R   ARR   R       K G   N  TY +++    RA +      +LEEM   G+  +
Sbjct: 442 RMVEARRVLKRMA-----KRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPN 496

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLF 337
           + T++  +  F    + ++A  + E + + +  KA +     +++ L R+     A  L 
Sbjct: 497 VITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL 556

Query: 338 DKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEM-IDKGFKPDVVAHNIMLEGLLK 395
           + +K   T P    Y  L+ G C+ K L +A  V  EM + +  +P+  A+  +++ L +
Sbjct: 557 EAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAR 616

Query: 396 IGKRSDAIKLF-EVMKAKG 413
            G+  +A  L  E++  KG
Sbjct: 617 EGRHEEANALADELLGNKG 635


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 22/383 (5%)

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAI 301
           H+  T+N ++  L +A Q    + M+EEM   GL   ET F   M  +        A+ I
Sbjct: 201 HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260

Query: 302 FELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
            E M +Y       T+N L+    +  ++ +    + + +   F P+  TY  L+ G C+
Sbjct: 261 KEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCK 320

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           + +   A  V + M+  G  PD+  +N ++ GL K+G+  +A+K+ + M ++  SPN  +
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380

Query: 421 YTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y  +I   CK+N                       +  LI G           DL +EM+
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMK 440

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +GC PD  TYN LI  +   +  +EA+ + KEM  +G    +  YN ++  + +    E
Sbjct: 441 GKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIE 500

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              +++DEM  +G   D  +Y  LI GL    R  +A + +++M+ +G++     YN   
Sbjct: 501 EAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLL 560

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               + G      ++ Q M  SG
Sbjct: 561 THFCKTGDIKKAADIVQTMTSSG 583



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 186/434 (42%), Gaps = 58/434 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--------LLSM 279
           A R F WA  +P F  +S  Y  ++  LG+A  FE M  +LEEM   G        L+ +
Sbjct: 80  ALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFV 139

Query: 280 ETF-----------------------------KIAMNAFAAAKERKKAVAIFELMNKYKF 310
           E++                              + +N    A + K   +    M + + 
Sbjct: 140 ESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRI 199

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  V T N L++ L ++   + A L+ +++  +  +P+ TT+T ++ G+    NL  A R
Sbjct: 200 RHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALR 259

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +  +M++ G     V  N+++ G  K G+   A+   +   ++G  P+  +Y  ++   C
Sbjct: 260 IKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLC 319

Query: 430 KQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           K   A                     Y  LI+G      ++    +L +M  R C P+ +
Sbjct: 320 KIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAV 379

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TYNA+I  +  +   DEA  I + +   G  P + T+N +++    + N++    +++EM
Sbjct: 380 TYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +GC PD+ +Y +LI  L S  +  EA   L+EM   G    V+ YN       +  R 
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRI 499

Query: 590 YVLDELAQKMRFSG 603
              +E+  +M   G
Sbjct: 500 EEAEEIFDEMELQG 513



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 22/375 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           T N +++   +  + +  +S ++E   +G    + T+   +N        K A+ + + M
Sbjct: 275 TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAM 334

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                   + T N L+  L +    +EA  + D++  R  +PN  TY  ++   C+   +
Sbjct: 335 LLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRV 394

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  +   +  KG  PDV   N +++GL        A+ LFE MK KG  P+  +Y ++
Sbjct: 395 DEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNML 454

Query: 425 IWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   C                     +N  +Y  LI GF   +R++   ++  EME +G 
Sbjct: 455 IDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGV 514

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D +TYN LI  +   K  ++A ++  +M+  G +P   TYN ++  + +TG+ +    
Sbjct: 515 SRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAAD 574

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +   M   GC PD  +Y  LI GL    R   A + L  +  KGM      YN     L 
Sbjct: 575 IVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALF 634

Query: 585 RAGRSYVLDELAQKM 599
           +  R++    L ++M
Sbjct: 635 KRNRTHEAMRLFREM 649



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 202/442 (45%), Gaps = 46/442 (10%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVL---ERFRHARRPAFRFFCWAG 236
           EIE   K++D++ S D +  AV        ++N ++  L    R   A   A R     G
Sbjct: 358 EIEEAVKILDQMVSRDCSPNAV--------TYNAIISSLCKENRVDEATEIA-RLLTSKG 408

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
             P       T+NS++  L  +   ++ + + EEM  KG    E T+ + +++  ++++ 
Sbjct: 409 ILPDVC----TFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKL 464

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           ++A+ + + M        V   N L++   ++K  +EA+ +FD+++ +  + +  TY  L
Sbjct: 465 EEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTL 524

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+ K + +A ++ ++MI +G +PD   +N +L    K G    A  + + M + G 
Sbjct: 525 IDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           +P++ +Y  +I   CK                 R+ +   LL+ ++ +G       YN +
Sbjct: 585 NPDIVTYATLISGLCKAG---------------RVQVASRLLRSIQMKGMVLTPHAYNPV 629

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV--WDEMIRR 532
           I+ +  +    EA+R+++EM+     P   TY ++ +     G   +G  V    EMI R
Sbjct: 630 IQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGG-PIGEAVDFTVEMIER 688

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP--------VLDYNKFAADLS 584
           G  P+ +S+ +L  GL +        K ++ ++EK   +          L   KF   LS
Sbjct: 689 GNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREISTIRGFLKIRKFQDALS 748

Query: 585 RAGRSYVLDELAQKMRFSGKFE 606
             G   +LD++  +  + G+ E
Sbjct: 749 TLGG--ILDDMYPRRSYRGRRE 768


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 185/395 (46%), Gaps = 29/395 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G    + + N++++ LGRAR+F+ M ++L EM E  +  ++ TF I +N     +   
Sbjct: 298 KLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVD 357

Query: 297 KAVAIFELMNK-----YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLT 349
           +A+ +FE MN      +  +  V T N L++ L +    +E   L ++++   R  PN  
Sbjct: 358 EALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTV 417

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY  L+ G+C+   +  A  ++++M   G  P+VV  N +++G+ K G+ + A++ F  M
Sbjct: 418 TYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM 477

Query: 410 KAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM 449
           + KG   N  +YT +I  FC  N                    A VY  LI+G     ++
Sbjct: 478 QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKL 537

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D    +L +M+E G  PD +++N LI     +   DEA  + KEM  +G KP   TYN +
Sbjct: 538 DRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTL 597

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + +TG++    ++  +M++ G  P   +Y  LI          EA K   +M     
Sbjct: 598 ISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK 657

Query: 570 KAP-VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             P  + YN     L R  +  +   L   M+  G
Sbjct: 658 VPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKG 692



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 178/410 (43%), Gaps = 29/410 (7%)

Query: 209 LSH--NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL------GRARQ 260
           L+H  N+++DVL R                 K  F  NS T + + S L      GRA  
Sbjct: 191 LTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVD 250

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
            E +V ++ +  E  +     +   + +    +    +A  +   + K        + N 
Sbjct: 251 EEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNA 310

Query: 320 LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM---I 375
           LL  LGR++  K    L  ++K     PN+ T+ +L+   C+ + + EA  V+ +M    
Sbjct: 311 LLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGE 370

Query: 376 DKGF--KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
             GF  +PDV+ +N +++GL K+G++ + + L E M+++   P            C  N 
Sbjct: 371 SNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQ---PR-----------CMPNT 416

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y CLI G+     ++   +L  +M + G PP+ +T N L+  M      + AV  + E
Sbjct: 417 VTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNE 476

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M   G K    TY  +++++    N E   +++DEM+  GC PD   Y  LI GL    +
Sbjct: 477 MQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              A   L +M E G    ++ +N       R  +     E+ ++M  +G
Sbjct: 537 LDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAG 586



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 132/304 (43%), Gaps = 18/304 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           +K G   N  T N+++  + +  +    V    EM  KGL  +  T+   + AF      
Sbjct: 443 NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNI 502

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           +KA+ +F+ M +            L+  L ++     A  +  K+K   F+P++ ++ VL
Sbjct: 503 EKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVL 562

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+CR   L EA  +  EM + G KPD V +N ++    K G  S A +L + M  +G 
Sbjct: 563 INGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGL 622

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNA 473
            P V +Y  +I  +C              GN   +D    + ++M      PP+ + YN 
Sbjct: 623 VPTVVTYGALIHAYCLN------------GN---LDEAMKIFRDMSSTSKVPPNTVIYNI 667

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  +  +   D A+ +  +M   G KP  +T+N + K   +        ++ D M    
Sbjct: 668 LINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHA 727

Query: 534 CCPD 537
           C PD
Sbjct: 728 CNPD 731



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 155/397 (39%), Gaps = 39/397 (9%)

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF 302
           HN      ++    +A +F   V       +  LLS     +  +A        K + +F
Sbjct: 88  HNLLQITRLLGSTAKALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNSHNKLLDLF 147

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCR 360
           +    +K    V+    L+   GR+++  E+ L++++L    R T       +L+    R
Sbjct: 148 KTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCPSRRLT---HIRNILIDVLFR 204

Query: 361 VKNLMEAGRVWNEMIDKG--FKPDVVAHNIMLEGLL---KIGKRSD---AIKLFEVMKAK 412
              + +A  + +EM+     F P+    +I+   L    K+G+  D    + L       
Sbjct: 205 KGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEH 264

Query: 413 GPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIV 452
              PN    T +I + C+                      AA    L+T  G  R    +
Sbjct: 265 EVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRM 324

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM---VRSGF--KPTIHTYN 507
             LL EM+E    P+ +T+  LI  +   +  DEA+ ++++M     +GF  +P + TYN
Sbjct: 325 NTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYN 384

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            ++    + G  E G  + + M  +  C P+  +Y  LI G         A +  ++M +
Sbjct: 385 TLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNK 444

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            G+   V+  N     + + GR     E   +M+  G
Sbjct: 445 DGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKG 481



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 39/211 (18%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAK 293
           AG KP    +  TYN+++S   +   F T   ++++M ++GL+ ++ T+   ++A+    
Sbjct: 585 AGIKP----DGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNG 640

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
              +A+ IF  M+                    SK+P               PN   Y +
Sbjct: 641 NLDEAMKIFRDMS------------------STSKVP---------------PNTVIYNI 667

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+   CR   +  A  + ++M  KG KP+    N M +GL +    S A +L + M    
Sbjct: 668 LINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHA 727

Query: 414 PSPNVRSYTIMI-WKFCKQNAAVYTCLITGF 443
            +P+  +  I+  W       A     + G+
Sbjct: 728 CNPDYITMEILTEWLSAVGETAKLKSFVQGY 758


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 206/438 (47%), Gaps = 38/438 (8%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHAR-RP--AFRFFCWAGDKPGFAHNSRTYNSMM 252
           +N++  L   G+ LS++L+  VL+R R +   P  A  FF +  D+ GF H+S + ++M+
Sbjct: 57  QNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTML 116

Query: 253 SILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
            ILGR+R+F+ +  +L ++  K   L++  T ++ +   A     +  V  F     +KF
Sbjct: 117 YILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMTVESF-----WKF 171

Query: 311 KAGV---DT--INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  V   DT   N LL  L + K   +A+ ++  LK  F PNL T+ +LL GW   K+  
Sbjct: 172 KRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGW---KSSE 228

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA   + EM + G KPD+V +N +++   K  +   A  +   M+ +   P+V +YT +I
Sbjct: 229 EAELFYEEMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSII 288

Query: 426 WKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                                  C  + A Y  +I  +   +R+D  Y L+ EME +G  
Sbjct: 289 GGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMS 348

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  +YN   ++         +   Y  M+ +G  P   +   ++K + +    EM  ++
Sbjct: 349 PNATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEKVEMALQL 408

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           W++M+ +G         VL+G L    +  EA K   +M+EKG K   + + +    +  
Sbjct: 409 WNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSNVSFRRIKVLMEL 468

Query: 586 AGRSYVLDELAQKMRFSG 603
           A +   +  L++KM   G
Sbjct: 469 ANKHDAIRNLSEKMAIFG 486



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 204/478 (42%), Gaps = 57/478 (11%)

Query: 87  SLYRSHCQVPCLLPHSSSL-HSLQKVLLNKSTNVVASSLTNHNL-----ATNILDSNCVN 140
           S Y S  ++P L  H++   H+ + + ++   N++++S ++ NL     +T +  SN + 
Sbjct: 16  SRYVSSSKIPFLSLHTNPQNHNNKDIQVDAIYNIISNSTSSQNLKQSLKSTGVFLSNDLI 75

Query: 141 YRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTA---------DPREIERVCKVIDEL 191
            + +  V   + +     D  N  ++     + S +           R+ + +  V+ ++
Sbjct: 76  DKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTMLYILGRSRKFDHIWDVLIDI 135

Query: 192 FSLDRNM------EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNS 245
              DRN+      + VL       S  + V+   +F+    P F   C            
Sbjct: 136 KRKDRNLITPRTLQVVLGRVAKVCSVRMTVESFWKFKRLV-PVFDTSC------------ 182

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
             +N+++  L + +      ++   + +    +++TF I ++ + +++E   A   +E M
Sbjct: 183 --FNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSSEE---AELFYEEM 237

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            +   K  + T N L++   + +  ++A  +  +++     P++ TYT ++GG   V   
Sbjct: 238 KELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQP 297

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPSPNVRSYTI 423
            +A  +  EM + G  PDV A+N ++     I KR DA   L   M++KG SPN  SY +
Sbjct: 298 DKARDMLKEMKEHGCYPDVAAYNAVIRNYC-IAKRLDAAYSLMAEMESKGMSPNATSYNL 356

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
               F   N    +               +D    M + GC P+  +   LIKL K  + 
Sbjct: 357 FFRVFSWSNDLRNS---------------WDFYGRMMDAGCLPNTQSCMFLIKLFKRHEK 401

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
            + A++++ +MV  GF   I   ++++      G      K + +M+ +G  P + S+
Sbjct: 402 VEMALQLWNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSNVSF 459


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 180/368 (48%), Gaps = 5/368 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N    +S    L  A ++E   S++ EM  +G +    T+   +N    A + + A
Sbjct: 443 GVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELA 502

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +    A V T   ++++  ++ L ++A+  F++++    TPN+ TYT L+  
Sbjct: 503 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA 562

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + + K +  A  ++  M+ +G  P++V ++ +++G  K G+   A ++FE M      P+
Sbjct: 563 YLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622

Query: 418 VRSYTIMIWKFCKQ-NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           V  Y        ++ N   Y  L+ GF    R++    LL  M   GC P+ + Y+ALI 
Sbjct: 623 VDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALID 682

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L K+ K+ DEA  +  EM   GF  T++TY+ ++  YF+    ++  KV  +M+   C 
Sbjct: 683 GLCKVGKL-DEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCA 741

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P+   YT +I GL    ++ EAYK ++ M EKG +  V+ Y          G+     EL
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 596 AQKMRFSG 603
            ++M   G
Sbjct: 802 LERMGSKG 809



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 40/364 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ +++ L  A + E    + EEM   GL++ + T+ I +++F  A   ++A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F  M +      V T   L+    ++K    A  LF+  L     PN+ TY+ L+ G
Sbjct: 538 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
            C+   + +A +++  M        +D  FK        P+VV +  +L+G  K  +  +
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 657

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A KL + M  +G  PN   Y  +I   CK                         Y+ LI 
Sbjct: 658 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLID 717

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
            +   +R D+   +L +M E  C P+ + Y  +I  L K+ K  DEA ++ + M   G +
Sbjct: 718 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK-TDEAYKLMQMMEEKGCQ 776

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++  +   G  E   ++ + M  +G  P+  +Y VLI           A+  
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836

Query: 561 LEEM 564
           LEEM
Sbjct: 837 LEEM 840



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 161/391 (41%), Gaps = 72/391 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY +++    +A++      + E M  +G L ++ T+   ++    A + +KA
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607

Query: 299 VAIFELMNKYKFKAGVD----------------TINCLLENLGRSKLPKEAQLLFDKLKH 342
             IFE M   K    VD                T   LL+   +S   +EA+ L D +  
Sbjct: 608 CQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSM 667

Query: 343 R-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF---------------------- 379
               PN   Y  L+ G C+V  L EA  V  EM + GF                      
Sbjct: 668 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 727

Query: 380 -------------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
                         P+VV +  M++GL K+GK  +A KL ++M+ KG  PNV +YT MI 
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI- 786

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                          GFG   +++   +LL+ M  +G  P+ +TY  LI         D 
Sbjct: 787 --------------DGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDV 832

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  + +EM ++ +      Y  +++ + +     +G  + DE+ +    P  + Y +LI 
Sbjct: 833 AHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG--LLDEIGQDDTAPFLSVYRLLID 890

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            LI   R   A + LEE+      A ++DY+
Sbjct: 891 NLIKAQRLEMALRLLEEV--ATFSATLVDYS 919



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 174/437 (39%), Gaps = 64/437 (14%)

Query: 160 GNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLE 219
           GN +  ++  +  +S+ D R I      +D++F   R  +  L +    LS +LV++VL 
Sbjct: 83  GNVNVHQVVPIITQSSIDARAIADAVSGVDDVFG--RKSQKFLRQFREKLSESLVIEVL- 139

Query: 220 RFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
             R   RP+    FF WAG + G+ H +  YN+++ ++ R    +     L+++ +    
Sbjct: 140 --RLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD--- 194

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
             E F   +N       R  + +I                   LE LGR K         
Sbjct: 195 DKEVFGEFLNVLVRKHCRNGSFSI------------------ALEELGRLK--------- 227

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
                RF P+ +TY  L+  + +   L  A  +  EM     + D          L K+G
Sbjct: 228 ---DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG 284

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  +A+ L E       + N    T+            YT LI+G       +   D L 
Sbjct: 285 KWREALTLVE-------TENFVPDTVF-----------YTKLISGLCEASLFEEAMDFLN 326

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M    C P+ +TY+ L+     +K      R+   M+  G  P+   +N ++ +Y  +G
Sbjct: 327 RMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL------ISQDRSGEAYKYLEEMLEKGMKA 571
           ++    K+  +M++ G  P    Y +LIG +      ++ D    A K   EML  G+  
Sbjct: 387 DHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVL 446

Query: 572 PVLDYNKFAADLSRAGR 588
             ++ + F   L  AG+
Sbjct: 447 NKINVSSFTRCLCSAGK 463



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 32/346 (9%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++    ++ + E    +L+ M  +G    +  +   ++      +  +A  + 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
             M+++ F A + T + L++   + K    A  +  K L++   PN+  YT ++ G C+V
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA ++   M +KG +P+VV +  M++G   IGK    ++L E M +KG +PN  +Y
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 422 TIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            ++I   CK  A                    A Y  +I GF N+  ++ +  LL E+ +
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF-NKEFIESL-GLLDEIGQ 875

Query: 462 RGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQT 516
               P    Y  LI  L+K Q++ + A+R+ +E+  + F  T+     TYN +++S    
Sbjct: 876 DDTAPFLSVYRLLIDNLIKAQRL-EMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLA 932

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              E   +++ EM ++G  P+  S+  LI GL    +  EA   L+
Sbjct: 933 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 16/366 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK--KA 298
           F  +  TYN ++    +A + ++   +  EM    L  M+ F +   A++  K  K  +A
Sbjct: 231 FRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANL-RMDGFTLRCFAYSLCKVGKWREA 289

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + + E  N   F         L+  L  + L +EA    ++++     PN+ TY+ LL G
Sbjct: 290 LTLVETEN---FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCG 346

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
               K L    RV N M+ +G  P     N ++      G  S A KL + M   G  P 
Sbjct: 347 CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPG 406

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              Y I+I   C    ++         N   +D+      EM   G   + +  ++  + 
Sbjct: 407 YVVYNILIGSICGDKDSL---------NCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 457

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      ++A  + +EM+  GF P   TY+ ++         E+   +++EM R G   D
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT+++          +A K+  EM E G    V+ Y        +A +    +EL +
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 598 KMRFSG 603
            M   G
Sbjct: 578 TMLSEG 583



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 10/195 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY +M+   G   + ET + +LE MG KG+  +  T+++ ++        
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
             A  + E M +  +         ++E   +  +  E+  L D++    T P L+ Y +L
Sbjct: 831 DVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLL 888

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV----AHNIMLEGLLKIGKRSDAIKLFEVMK 410
           +    + + L  A R+  E+    F   +V     +N ++E L    K   A +LF  M 
Sbjct: 889 IDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946

Query: 411 AKGPSPNVRSYTIMI 425
            KG  P ++S+  +I
Sbjct: 947 KKGVIPEMQSFCSLI 961


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 179/389 (46%), Gaps = 27/389 (6%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAK 293
            G KP       TY ++++ L   + F+++ S++ ++ E G+     F    +NAF+ + 
Sbjct: 101 GGHKPSLV----TYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESG 156

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTY 351
             ++A+  F  M +   K    T N L++  G +  P+E+Q L + +       PNL TY
Sbjct: 157 NMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTY 216

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            VL+  WC   N+M+A  V  +M+  G +PD V +N +     + G+ S A  +   M+ 
Sbjct: 217 NVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
               PN R+  I+I  +CK+                    N  V+  LI GF +    D 
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDG 336

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V ++L  MEE G  PD +T++ ++         D+   I+ +MV++  +P  H Y+++ K
Sbjct: 337 VNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAK 396

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y + G  E   ++ + MI+ G  P+   +T +I G  S  R   A K  E+M E G+  
Sbjct: 397 GYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAP 456

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +  +         A + +  +E+ Q M 
Sbjct: 457 NLKTFETLIWGYGEARQPWKSEEVLQIME 485



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F   +  F  A +R     +  LM ++  K  V T + ++     +    + + +FD + 
Sbjct: 321 FNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMV 380

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           K R  P+   Y++L  G+ R     +A  + N MI  GF P+VV    ++ G    G+  
Sbjct: 381 KARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRME 440

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            AIK+FE M   G +PN++++  +IW               G+G  R+     ++L+ ME
Sbjct: 441 YAIKIFEKMCECGIAPNLKTFETLIW---------------GYGEARQPWKSEEVLQIME 485

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           E    P+  T   + +  +   +  EA RI
Sbjct: 486 EFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 404 KLFEVMKAKGPSPNVRSY-TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           KL  +M  KG    V+S    +I    K +   YT L+     ++  D ++ ++ ++EE 
Sbjct: 77  KLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEEN 136

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NA+I          EA++ + +M  SG KPT  T+N ++K Y   G  E  
Sbjct: 137 GMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEES 196

Query: 523 RKVW-----DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +K+      DE +R    P+  +Y VL+    ++    +A+  + +M+  G++   + YN
Sbjct: 197 QKLLZLMSQDENVR----PNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYN 252

Query: 578 KFAADLSRAGRSYVLDELAQKMRFS 602
             A   ++ G +   + +  +M+ S
Sbjct: 253 TIATAYAQNGEASQAEGIILEMQNS 277


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 172/329 (52%), Gaps = 19/329 (5%)

Query: 240 GFAHNSRTYNSMMSIL-GRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           G A N  +YNS+++ L G+ R  E +  ++EEM  KGL+  E T+   +N F       +
Sbjct: 272 GVAANLISYNSVINGLCGKGRMSE-VGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQ 330

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
            + +   M        V T   L+  + ++     A  +FD+++ R   PN  TYT L+ 
Sbjct: 331 GLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLID 390

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+   + EA +V +EMI  GF P VV +N ++ G   +G+  +A+ +   M  +G  P
Sbjct: 391 GFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPP 450

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V SY+ +I  FC++               R +   + + +EM E+G  PD +TY++LI+
Sbjct: 451 DVVSYSTVIAGFCRE---------------RELGKAFQMKEEMVEKGVLPDTVTYSSLIQ 495

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            + +Q+   EA  +++EM+R G  P   TY  ++ +Y   G      ++ DEM++RG  P
Sbjct: 496 GLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLP 555

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           D+ +Y+VLI GL  + R+  A + L ++ 
Sbjct: 556 DNVTYSVLINGLNKKARTKVAKRLLLKLF 584



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 198/423 (46%), Gaps = 35/423 (8%)

Query: 209 LSHNLVVDVLER--------FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ 260
           LS+N V+D L R        +  A R  FR     G  P    N  TYN ++  +     
Sbjct: 168 LSYNAVLDALLRRSSSNHRDYDDAER-VFRDMVRNGVSP----NVYTYNVIIRGVVSQGD 222

Query: 261 FETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
            E  +  + +M ++G+  ++ T+   ++A    K+ K+A+A+   M      A + + N 
Sbjct: 223 LEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNS 282

Query: 320 LLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           ++  L G+ ++ +  +L+ +       P+  TY  L+ G+C+  NL +   + +EM+ KG
Sbjct: 283 VINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKG 342

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------- 431
             P+VV +  ++  + K G  S A+++F+ M+ +G  PN R+YT +I  FC++       
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAY 402

Query: 432 -------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                        +   Y  L+ G+    R+     +L+ M ERG PPD ++Y+ +I   
Sbjct: 403 KVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF 462

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             ++   +A ++ +EMV  G  P   TY+ +++             ++ EM+RRG  PD+
Sbjct: 463 CRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDE 522

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT LI          +A +  +EM+++G     + Y+     L++  R+ V   L  K
Sbjct: 523 VTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLK 582

Query: 599 MRF 601
           + +
Sbjct: 583 LFY 585



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 146/346 (42%), Gaps = 29/346 (8%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK-----E 332
           S   F + + + +      KA+ +  L N++ F   V + N +L+ L R          +
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 333 AQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A+ +F D +++  +PN+ TY V++ G     +L +      +M  +G  P+VV +N +++
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
              K  K  +A+ L   M   G + N+ SY  +I   C +                    
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +   Y  L+ GF     +     LL EM  +G  P+ +TY  LI  M        AV I+
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIF 370

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M   G +P   TY  ++  + Q G      KV  EMI  G  P   +Y  L+ G    
Sbjct: 371 DQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFL 430

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVLDE 594
            R  EA   L  M+E+G+   V+ Y+   A   R    G+++ + E
Sbjct: 431 GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKE 476



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 41/365 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N  TY ++++ + +A      V + ++M  +GL   E T+   ++ F       +A
Sbjct: 342 GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEA 401

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             +   M    F   V T N L+     LGR +  +   +L   ++    P++ +Y+ ++
Sbjct: 402 YKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQ--EAVGILRGMVERGLPPDVVSYSTVI 459

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+CR + L +A ++  EM++KG  PD V ++ +++GL    K  +A  LF  M  +G  
Sbjct: 460 AGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLP 519

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +YT +I  +C                      +   Y+ LI G   + R  +   L
Sbjct: 520 PDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRL 579

Query: 456 LKEMEERGCPPDGLTYNALIK------------LMK---IQKMPDEAVRIYKEMVRSGFK 500
           L ++      PD +TYN LI+            L+K   ++ + +EA R++K M++   K
Sbjct: 580 LLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHK 639

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P    YN+++  + + GN      ++ E+          +   L+  L  +  + E  + 
Sbjct: 640 PNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRL 699

Query: 561 LEEML 565
           L+ +L
Sbjct: 700 LQNIL 704



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 145/338 (42%), Gaps = 43/338 (12%)

Query: 240 GFAHNSRTYNSMMS---ILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKER 295
           GF+ +  TYN+++     LGR ++    V +L  M E+GL   + ++   +  F   +E 
Sbjct: 412 GFSPSVVTYNALVHGYCFLGRVQE---AVGILRGMVERGLPPDVVSYSTVIAGFCREREL 468

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            KA  + E M +        T + L++ L   +   EA  LF ++  R   P+  TYT L
Sbjct: 469 GKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSL 528

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +C    L +A R+ +EM+ +GF PD V +++++ GL K  +   A +L   +  +  
Sbjct: 529 INAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEES 588

Query: 415 SPNVRSYTIMIWK---------------FC--------------------KQNAAVYTCL 439
            P+  +Y  +I                 FC                    K NAA+Y  +
Sbjct: 589 VPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLM 648

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G      +   Y+L  E+E        +   AL+K +  + M DE  R+ + ++RS  
Sbjct: 649 IHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCR 708

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   ++++  F+ GN +    V  EM + G  PD
Sbjct: 709 LNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRS-----DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           GF P V+++N +L+ LL+    +     DA ++F  M   G SPNV +Y ++I     Q 
Sbjct: 162 GFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQG 221

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                 L  G G           +++ME+ G  P+ +TYN LI     +K   EA+ + +
Sbjct: 222 D-----LEKGLG----------FMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLR 266

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            M   G    + +YN ++      G      ++ +EM  +G  PD+ +Y  L+ G   + 
Sbjct: 267 AMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEG 326

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              +    L EM+ KG+   V+ Y      + +AG      E+  +MR  G
Sbjct: 327 NLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRG 377



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 39/267 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ TY+S++  L   ++      +  EM  +GL   E T+   +NA+    E  KA
Sbjct: 482 GVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKA 541

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL-- 355
           + + + M +  F     T + L+  L +    K A+ L  KL +  + P+  TY  L+  
Sbjct: 542 LRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIEN 601

Query: 356 -------------GGWCRVKNLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
                         G+C +K LM EA RV+  M+ +  KP+   +N+M+ G  + G    
Sbjct: 602 CSNNEFKSVEGLVKGFC-MKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHK 660

Query: 402 A-------------------IKLFEVMKAKGPSPNVRSYTIMIWKFCKQN-AAVYTCLIT 441
           A                   I L + +  +G +  +      I + C+ N A V   L+ 
Sbjct: 661 AYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVE 720

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDG 468
                  MD V ++L EM + G  PDG
Sbjct: 721 VNFKEGNMDAVLNVLTEMAKDGLLPDG 747


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 180/368 (48%), Gaps = 5/368 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N    +S    L  A ++E   S++ EM  +G +    T+   +N    A + + A
Sbjct: 443 GVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELA 502

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +    A V T   ++++  ++ L ++A+  F++++    TPN+ TYT L+  
Sbjct: 503 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA 562

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + + K +  A  ++  M+ +G  P++V ++ +++G  K G+   A ++FE M      P+
Sbjct: 563 YLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622

Query: 418 VRSYTIMIWKFCKQ-NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           V  Y        ++ N   Y  L+ GF    R++    LL  M   GC P+ + Y+ALI 
Sbjct: 623 VDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALID 682

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L K+ K+ DEA  +  EM   GF  T++TY+ ++  YF+    ++  KV  +M+   C 
Sbjct: 683 GLCKVGKL-DEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCA 741

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P+   YT +I GL    ++ EAYK ++ M EKG +  V+ Y          G+     EL
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 596 AQKMRFSG 603
            ++M   G
Sbjct: 802 LERMGSKG 809



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 40/364 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ +++ L  A + E    + EEM   GL++ + T+ I +++F  A   ++A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F  M +      V T   L+    ++K    A  LF+  L     PN+ TY+ L+ G
Sbjct: 538 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
            C+   + +A +++  M        +D  FK        P+VV +  +L+G  K  +  +
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 657

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A KL + M  +G  PN   Y  +I   CK                         Y+ LI 
Sbjct: 658 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLID 717

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
            +   +R D+   +L +M E  C P+ + Y  +I  L K+ K  DEA ++ + M   G +
Sbjct: 718 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK-TDEAYKLMQMMEEKGCQ 776

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++  +   G  E   ++ + M  +G  P+  +Y VLI           A+  
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836

Query: 561 LEEM 564
           LEEM
Sbjct: 837 LEEM 840



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 161/391 (41%), Gaps = 72/391 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY +++    +A++      + E M  +G L ++ T+   ++    A + +KA
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607

Query: 299 VAIFELMNKYKFKAGVD----------------TINCLLENLGRSKLPKEAQLLFDKLKH 342
             IFE M   K    VD                T   LL+   +S   +EA+ L D +  
Sbjct: 608 CQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSM 667

Query: 343 R-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF---------------------- 379
               PN   Y  L+ G C+V  L EA  V  EM + GF                      
Sbjct: 668 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 727

Query: 380 -------------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
                         P+VV +  M++GL K+GK  +A KL ++M+ KG  PNV +YT MI 
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI- 786

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                          GFG   +++   +LL+ M  +G  P+ +TY  LI         D 
Sbjct: 787 --------------DGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDV 832

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  + +EM ++ +      Y  +++ + +     +G  + DE+ +    P  + Y +LI 
Sbjct: 833 AHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG--LLDEIGQDDTAPFLSVYRLLID 890

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            LI   R   A + LEE+      A ++DY+
Sbjct: 891 NLIKAQRLEMALRLLEEV--ATFSATLVDYS 919



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 174/437 (39%), Gaps = 64/437 (14%)

Query: 160 GNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLE 219
           GN +  ++  +  +S+ D R I      +D++F   R  +  L +    LS +LV++VL 
Sbjct: 83  GNVNVHQVVPIITQSSIDARAIADAVSGVDDVFG--RKSQKFLRQFREKLSESLVIEVL- 139

Query: 220 RFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
             R   RP+    FF WAG + G+ H +  YN+++ ++ R    +     L+++ +    
Sbjct: 140 --RLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD--- 194

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
             E F   +N       R  + +I                   LE LGR K         
Sbjct: 195 DKEVFGEFLNVLVRKHCRNGSFSI------------------ALEELGRLK--------- 227

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
                RF P+ +TY  L+  + +   L  A  +  EM     + D          L K+G
Sbjct: 228 ---DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG 284

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  +A+ L E       + N    T+            YT LI+G       +   D L 
Sbjct: 285 KWREALTLVE-------TENFVPDTVF-----------YTKLISGLCEASLFEEAMDFLN 326

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M    C P+ +TY+ L+     +K      R+   M+  G  P+   +N ++ +Y  +G
Sbjct: 327 RMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 386

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL------ISQDRSGEAYKYLEEMLEKGMKA 571
           ++    K+  +M++ G  P    Y +LIG +      ++ D    A K   EML  G+  
Sbjct: 387 DHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVL 446

Query: 572 PVLDYNKFAADLSRAGR 588
             ++ + F   L  AG+
Sbjct: 447 NKINVSSFTRCLCSAGK 463



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 32/346 (9%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++    ++ + E    +L+ M  +G    +  +   ++      +  +A  + 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
             M+++ F A + T + L++   + K    A  +  K L++   PN+  YT ++ G C+V
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA ++   M +KG +P+VV +  M++G   IGK    ++L E M +KG +PN  +Y
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 422 TIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            ++I   CK  A                    A Y  +I GF N+  ++ +  LL E+ +
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF-NKEFIESL-GLLDEIGQ 875

Query: 462 RGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQT 516
               P    Y  LI  L+K Q++ + A+R+ +E+  + F  T+     TYN +++S    
Sbjct: 876 DDTAPFLSVYRLLIDNLIKAQRL-EMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLA 932

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              E   +++ EM ++G  P+  S+  LI GL    +  EA   L+
Sbjct: 933 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 16/366 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK--KA 298
           F  +  TYN ++    +A + ++   +  EM    L  M+ F +   A++  K  K  +A
Sbjct: 231 FRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANL-RMDGFTLRCFAYSLCKVGKWREA 289

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + + E  N   F         L+  L  + L +EA    ++++     PN+ TY+ LL G
Sbjct: 290 LTLVETEN---FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCG 346

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
               K L    RV N M+ +G  P     N ++      G  S A KL + M   G  P 
Sbjct: 347 CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPG 406

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              Y I+I   C    ++         N   +D+      EM   G   + +  ++  + 
Sbjct: 407 YVVYNILIGSICGDKDSL---------NCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 457

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      ++A  + +EM+  GF P   TY+ ++         E+   +++EM R G   D
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT+++          +A K+  EM E G    V+ Y        +A +    +EL +
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 598 KMRFSG 603
            M   G
Sbjct: 578 TMLSEG 583



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 10/195 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY +M+   G   + ET + +LE MG KG+  +  T+++ ++        
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
             A  + E M +  +         ++E   +  +  E+  L D++    T P L+ Y +L
Sbjct: 831 DVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLL 888

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV----AHNIMLEGLLKIGKRSDAIKLFEVMK 410
           +    + + L  A R+  E+    F   +V     +N ++E L    K   A +LF  M 
Sbjct: 889 IDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946

Query: 411 AKGPSPNVRSYTIMI 425
            KG  P ++S+  +I
Sbjct: 947 KKGVIPEMQSFCSLI 961


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 21/278 (7%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
              CLL+ L ++   KEA  LF+ ++ RFTP L  +T LL GWCR   LMEA  V  ++ 
Sbjct: 87  VFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR 146

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---- 431
           + GF+PD+V +N +L G    GK  DA  L + M+ K   PNV S+T +I   C +    
Sbjct: 147 EAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKME 206

Query: 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                           +A  YT LI+GF    ++   Y+LL  M ++G  P+ +TY  ++
Sbjct: 207 EAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIM 266

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
              + ++  +E + + +EM + G  P ++ YN++++   + G  + G +VW+EM   G  
Sbjct: 267 AAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLS 326

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAP 572
           P  +++ ++I G +SQ    EA ++ +EM+ +G + AP
Sbjct: 327 PGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAP 364



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 23/216 (10%)

Query: 384 VAH--NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------- 431
           VAH    +L+ L K G   +A  LFE M+ +  +P ++ +T +++ +C++          
Sbjct: 84  VAHVFGCLLDALCKNGSVKEAASLFEDMRIRF-TPTLKHFTSLLYGWCREGKLMEAKYVL 142

Query: 432 ----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                     +  VY  L+TG+    +M   YDLLKEM  + C P+ +++  LI+ +  +
Sbjct: 143 VQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAK 202

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           K  +EA+R++ EM   G      TY  ++  + + G    G ++ D MI++G  P+  +Y
Sbjct: 203 KKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTY 262

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             ++     ++   E  + +EEM + G    +  YN
Sbjct: 263 LHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYN 298


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 209/459 (45%), Gaps = 31/459 (6%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           ME  L++    LS  +V DV+   R  RRP   FRFF W   +  F  +  T+N ++ +L
Sbjct: 51  MEDALEKLAPFLSSEIVNDVM---REQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDML 106

Query: 256 GRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
            +   F+T   +LEE+    + +   TF + + A+A +   +KAV  F  M  +  K  V
Sbjct: 107 AKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDV 166

Query: 315 DTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +L  + + ++   A  ++++ LK  + PN  T+ +LL G C+     +A ++++E
Sbjct: 167 FTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDE 226

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--- 430
           M  KG  P+ + + I+L GL +  +  D  +L   MK  G  P+  +   ++  FCK   
Sbjct: 227 MTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQ 286

Query: 431 --QNAAV---------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             +  A+               Y+ LI G    +R D V +  ++M + G  PD + Y  
Sbjct: 287 IDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTI 346

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI+      M D A+ +  +M + G  P  + YN ++K +   G  +  R +  E+ +  
Sbjct: 347 LIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKND 406

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C P   +YT+LI G+       EA +   +M   G    ++ +N     L +AG      
Sbjct: 407 CFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEAR 466

Query: 594 ELAQKMRFSGKFEVSNVLARWAE---TTKNRVYRKDRIE 629
            L  KM       +   L++ A+    T N  +R DR E
Sbjct: 467 HLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREE 505



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 146/376 (38%), Gaps = 78/376 (20%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G   N+  Y  ++S L +A++ + +  +L  M   G      T    ++ F    +  
Sbjct: 229 QKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQID 288

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
           +A A+ +L  K  +  G+   + L++ L R+K   E Q    K+ K    P++  YT+L+
Sbjct: 289 EAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILI 348

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C V  +  A  + N+M  +G  PD   +N +++G   +G    A             
Sbjct: 349 RGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA------------- 395

Query: 416 PNVRSYTIMIWKF-CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
              RS  + I K  C   +  YT LI G      +D    +  +ME  GC P  +T+NAL
Sbjct: 396 ---RSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNAL 452

Query: 475 IK----------------LMKIQKMP--------------------------DEAVRIYK 492
           I                  M+I K P                          ++A R+  
Sbjct: 453 IDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLD 512

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           +MV++G  P+   Y  +M    + G   +   +W + +R                L SQ+
Sbjct: 513 QMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLR---------------SLPSQE 557

Query: 553 RSGEAYKYLEEMLEKG 568
              E  K  EE  EKG
Sbjct: 558 --DETLKLAEEHFEKG 571


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 200/454 (44%), Gaps = 48/454 (10%)

Query: 184 VCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFA 242
           +C ++ D   S    +E  L+  GI     L+  +   F  + +P F  F WA  +PGF 
Sbjct: 75  ICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFE 134

Query: 243 HNSRTYNSMMSILGRARQFET----MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
            +   +NSM+ +L ++R F++    ++  +E   E  L+S  TF + +  +A A     A
Sbjct: 135 SSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSA 194

Query: 299 VAIFELMNKYKFKAGVDTI----------NCLLENLGRSKLPKEAQLLFDK---LKHRFT 345
           +  FE      F   +D+I            LL++L +    + A   FD+   L   + 
Sbjct: 195 IRTFE------FAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWV 248

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++  Y VLL GW R + L  A ++W  M  +  KP VV +  ++EG  ++ +   AI+L
Sbjct: 249 PSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIEL 308

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGN 445
              M+ KG  PNV  Y  +I    +                       + Y  L+ GF  
Sbjct: 309 VGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCK 368

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +     +LK M  RG  P   TYN   +        +E + +Y +M+ SG  P   T
Sbjct: 369 AGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLT 428

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y++++K   +    ++  +V  EM  RGC  D  + T+L+  L    R  EA+   E+M+
Sbjct: 429 YHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMI 488

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            +G+    L + +    L + G    L E+A+K+
Sbjct: 489 RRGIVPQYLTFERMNNALRKRG----LTEMARKL 518



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 145/319 (45%), Gaps = 17/319 (5%)

Query: 213 LVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           +++D L +  H R  +  F    G  P +  + R YN +++   R+R+ +    +   M 
Sbjct: 219 ILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTMK 278

Query: 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
            + +  ++ T+   +  +   +  +KA+ +   M     +  V   N ++++L  +   K
Sbjct: 279 RENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFK 338

Query: 332 EAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           EA  + ++ L     P ++TY  L+ G+C+  +L+ A +V   MI +GF P +  +N   
Sbjct: 339 EAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFF 398

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
               + GK  + + L+  M   G +P+  +Y ++I   C++                R+D
Sbjct: 399 RYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEE---------------RLD 443

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +   + KEM  RGC  D  T   L+ L+      +EA   +++M+R G  P   T+  + 
Sbjct: 444 LAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMN 503

Query: 511 KSYFQTGNYEMGRKVWDEM 529
            +  + G  EM RK+ D M
Sbjct: 504 NALRKRGLTEMARKLCDMM 522



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 33/313 (10%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLL-FDKLKHRFTPNLT---TYTVLLGGWCR 360
           M +  F++ +   N +++ L +S+    A LL  D+++    P L    T+ VL+  + R
Sbjct: 128 MKQPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYAR 187

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVV--------AHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
               + A R +    +  F  D +           I+L+ L K G    A + F+  +  
Sbjct: 188 AGMTLSAIRTF----EFAFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGL 243

Query: 413 GPS--PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
            PS  P++R               VY  L+ G+   R++     L + M+     P  +T
Sbjct: 244 DPSWVPSIR---------------VYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVT 288

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  L++     +  ++A+ +  EM   G +P +  YN I+ S  + G ++    + +  +
Sbjct: 289 YGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCL 348

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
                P  ++Y  L+ G         A K L+ M+ +G    +  YN F    SR G++ 
Sbjct: 349 VSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTE 408

Query: 591 VLDELAQKMRFSG 603
               L  KM  SG
Sbjct: 409 EGMNLYTKMIESG 421


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 193/418 (46%), Gaps = 28/418 (6%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           + +E  LD+ GI    +L+  V + F  + +     F WA  +P F  ++  +NS+++ L
Sbjct: 74  KPLETALDQTGIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINAL 133

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+ ++F++   ++  +   GL+S +TF I +  +  A   + A+  FE      F    +
Sbjct: 134 GKMKEFDSAWCLV--LDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDFICDYN 191

Query: 316 T---INCLLENLGRSKLPKEAQLLFD---KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
               +  LL++L +    + A+  FD   +L   + P++  Y ++L GW R + L  A R
Sbjct: 192 CDALLEILLDSLCKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAER 251

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +W EM      P VV +  ++EG  ++ +   AI+L +VM+ +G  PN   Y  +I    
Sbjct: 252 LWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALA 311

Query: 430 KQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           ++                      + Y  L+ G+   +       +LK M  RG  P   
Sbjct: 312 EEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPT 371

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TYN   +      M +E + +Y +M+ SG+ P   T+++++K   +    ++  ++  EM
Sbjct: 372 TYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEM 431

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             RGC  D  + T+LI       R  EA+   E+M++KG+    L + +   +L + G
Sbjct: 432 RSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRG 489



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 129/299 (43%), Gaps = 24/299 (8%)

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAA 291
           CW         + R YN M++   R+R+ +    +  EM +  +  S+ T+   +  +  
Sbjct: 225 CWIP-------HVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCR 277

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTT 350
            +  ++A+ + ++M K   +      N +++ L      KE   + +  L+    P ++T
Sbjct: 278 MRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTIST 337

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y  L+ G+C+ K+ + A +V   MI +GF P    +N       K G   + + L+  M 
Sbjct: 338 YNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMI 397

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G +P+  ++ +++   C++                R+D+   + KEM  RGC  D  T
Sbjct: 398 ESGYTPDRLTFHLLLKMLCEEE---------------RLDLAVQISKEMRSRGCDMDLAT 442

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
              LI L       +EA   +++M++ G  P   T+  +     + G  E  RK+ D M
Sbjct: 443 STMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKLSDMM 501


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 204/428 (47%), Gaps = 31/428 (7%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           +++   L    +  +  LV  VL+R       A +FF      P +AH++ +++  + I 
Sbjct: 63  KSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIA 122

Query: 256 GRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           GR R ++T+ +++  M  + +  S +TF I    F AA +  +A+ +F  M ++     +
Sbjct: 123 GRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDL 182

Query: 315 DTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            + N +L+ L +SK  + A   LF  L+ +F  ++ +Y ++  GWC +K   +A  V  E
Sbjct: 183 HSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKE 242

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M+++G  P +  +NI+L+G  + G+  +A + F  MK +    +V +YT M+        
Sbjct: 243 MVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMV-------- 294

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                   GFG    +     +  EM   G  P   TYNA+I+++  +   + AV +++E
Sbjct: 295 -------HGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEE 347

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV+ G+ P + TYN++++  F  GN +   +  + M   GC P+  +Y V I        
Sbjct: 348 MVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGD 407

Query: 554 SGEAYKYLEEMLEKGMKAPVLD-YN---------KFAADLSRAGRSYVLDELAQKMRFSG 603
             +     E+M +  +  P LD YN         K + DL  AG+  +L E+  +     
Sbjct: 408 VEKGLSMFEKMGQGSL--PNLDTYNVLISAMFVRKKSEDLVVAGK--LLLEMVDRGFIPR 463

Query: 604 KFEVSNVL 611
           KF  + VL
Sbjct: 464 KFTFNRVL 471



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN+M+ +L +    E  V M EEM +KG + ++ T+ + +     A    KA
Sbjct: 317 GILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKA 376

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG- 357
           +   E M     +  V T N  +     +   ++   +F+K+     PNL TY VL+   
Sbjct: 377 MEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSLPNLDTYNVLISAM 436

Query: 358 WCRVK--NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           + R K  +L+ AG++  EM+D+GF P     N +L GLL  G ++ A ++  +    G  
Sbjct: 437 FVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKCGRL 496

Query: 416 P 416
           P
Sbjct: 497 P 497


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 187/400 (46%), Gaps = 60/400 (15%)

Query: 228 AFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIA 285
           A + F +AG   P F HN  TY++++  L RAR FE + S+L E+ + G+  S + F   
Sbjct: 68  ALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFITV 127

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF- 344
           + ++  A   K A+  F  +  +  +  V ++N LL  L ++       LLF   K +F 
Sbjct: 128 IRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFG 187

Query: 345 ------------------------------------TPNLTTYTVLLGGWCRVKNLMEAG 368
                                                PN+ TYT +LGG+    +++ A 
Sbjct: 188 VVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAK 247

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           RV+ E+ D G+ PD   + I+++G +K G+ +DA+K+ + M+  G  PN  +Y ++I  +
Sbjct: 248 RVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGY 307

Query: 429 CKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           CK+                    N+A+   +I       R+     + +++ ++ C PD 
Sbjct: 308 CKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDN 367

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
              + LI  +  +    EA +++ E  R G   ++ TYN ++    + G      ++WD+
Sbjct: 368 AITSTLIHWLCKEGNIWEARKLFNEFER-GTISSLLTYNTLIAGMCEMGELCEAARLWDD 426

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           M+ +GC P++ +Y +LI G +   ++ E  K +EEML+KG
Sbjct: 427 MLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKG 466



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI-AMNAFAAAKERKKA 298
           G   N  TY  ++    + R+    +++L +M EK  +         ++        K+A
Sbjct: 292 GVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEA 351

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             ++E + K          + L+  L +     EA+ LF++ +     +L TY  L+ G 
Sbjct: 352 CKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGM 411

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C +  L EA R+W++M++KG  P+   +N++++G LK+GK  + IK+ E M  KG   N 
Sbjct: 412 CEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNE 471

Query: 419 RSYTIMI 425
            +Y I++
Sbjct: 472 STYLILV 478



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK--PDVVAHNIMLEGLLKIGKRSD 401
           FT N  TY  ++    R +       +  E+ D G     D+    I   GL    K   
Sbjct: 82  FTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKM-- 139

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A+K F  ++  G   +VRS   ++    + N               R   V+ L K  + 
Sbjct: 140 ALKTFLRIQTFGVRRSVRSLNTLLNALVQNN---------------RFSSVHLLFKYSKS 184

Query: 462 R-GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           + G  P+  T N LIK +  +   + A +++ EM   G  P + TY  I+  Y   G+  
Sbjct: 185 KFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMI 244

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             ++V+ E+   G  PD  +YT+L+ G + Q R  +A K ++EM E G++   + Y
Sbjct: 245 GAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITY 300



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           + G  P + T N+++K+  +  + E  RKV+DEM   G  P+  +YT ++GG +S+    
Sbjct: 185 KFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMI 244

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQ 597
            A +   E+ + G       Y        + GR      V+DE+ +
Sbjct: 245 GAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEE 290


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 181/377 (48%), Gaps = 32/377 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G   N  T N M++ L + R+FE ++  L +M  KG+ + + T+   +NA+      +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 297 KAVAIFELMNKYK---FKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYT 352
           +A   F+L+N +     + G+ T N +L  L +  K  +   +L + L+   TPN  TY 
Sbjct: 310 EA---FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            LL   CR  N++EA  +++EM  +G  PD+V+ + ++  L + G    A+  F  M+  
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426

Query: 413 GPSPNVRSYTIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIV 452
           G  P+   YTI+I  FC+  A                      Y   + G   ++     
Sbjct: 427 GIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADA 486

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L  EM ERG  PD  T+  LI+        D+A+ +++ MVR+  KP   TYN ++  
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 513 YFQTGNYEMGR--KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           + + G  EMGR  ++WD+MIR+   PD  SY  ++ G  S     EA    ++MLEKG++
Sbjct: 547 FCKAG--EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIR 604

Query: 571 APVLDYNKFAADLSRAG 587
             ++  N       R+G
Sbjct: 605 PNLVTCNTLIKGYCRSG 621



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 22/345 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELM 305
           +++S++ +L R       +    EM   G++     + I ++ F        A+ + + M
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                   V T N  L  L + K+  +A +LF+++  R   P+  T+T L+ G+C+  N+
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  ++  M+    KPD V +N +++G  K G+   A +L++ M  K   P+  SY  +
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 425 IWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  FC                    + N      LI G+     M   Y+ L +M   G 
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  +YN LI     +   ++A  +  EM + G +  I TYN+I+  +   G  +   +
Sbjct: 639 IPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           V  +MI  G  PD  +Y+ LI G +SQD   EA+++ +EML++G+
Sbjct: 699 VLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+ ++ L + + F     +  EM E+G++    TF   +  +       KA+ +FE M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 306 NKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   K    T N L++   ++ ++ +  +L  D ++    P+  +Y  +L G+C    L
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLL 588

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  + ++M++KG +P++V  N +++G  + G    A +    M + G  P+  SY   
Sbjct: 589 PEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYN-- 646

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                         LI G+     ++  + L+ EME+RG   + +TYN ++     +   
Sbjct: 647 -------------TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA ++ ++M+  G  P   TY+ ++  +    N +   +  DEM++RG  PDD
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 184/435 (42%), Gaps = 51/435 (11%)

Query: 191 LFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-DKPGFAHNSRTYN 249
           LF+L +N  + L +  + LS +L++ VL R R       +F        P F H+S + +
Sbjct: 80  LFTLKQNNVSYLRDSLLRLSPSLLLQVLFRCRGDLHLGLKFIGLVSYHFPNFKHSSXSLS 139

Query: 250 SMMSILGRARQF----------------------ETMVSMLEEMGEKGLLSMETFKIAMN 287
           +M+  L R R+                       E+++S     G  GL+    + + + 
Sbjct: 140 AMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLI----YDLLVR 195

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTP 346
            +  AK+ ++    F+++ +      ++  N LL  L R+     A  ++ + ++     
Sbjct: 196 TYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIEL 255

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ T  +++   C+ +         ++M  KG   D+V +N ++    + G   +A +L 
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
               ++G  P + +Y  +++  CK                     NAA Y  L+     R
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR 375

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +    ++  EM  RG  PD +++++LI ++       +A+  ++EM RSG  P    Y
Sbjct: 376 DNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIY 435

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            +++  + + G      K+ DEM+ RGC  D  +Y   + GL  +    +A     EM+E
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 567 KGMKAPVLDYNKFAA 581
           +GM   V D+  F  
Sbjct: 496 RGM---VPDFYTFTT 507



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 154/353 (43%), Gaps = 24/353 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ TYN+++  + R         + +EM  +G+L  + +F   +   A      +A
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           +  F  M +            L++   R+    +A  + D++  R    ++ TY   L G
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ K   +A  ++NEM+++G  PD      ++ G  K G    A+ LFE M      P+
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I  FCK                     +   Y  ++ GF +   +    +L  
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M E+G  P+ +T N LIK   +   MP +A     +M+ +G  P   +YN ++  Y + 
Sbjct: 597 QMLEKGIRPNLVTCNTLIKGYCRSGDMP-KAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            N E    + +EM +RG   +  +Y +++ G  ++ +  EA + L +M+E G+
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGI 708



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y +L+  + + K L E    +  +  KG    + A N +L GL++ G    A +++  + 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G   NV +  IM+   CK                R+ + V   L +ME +G   D +T
Sbjct: 250 RGGIELNVYTLNIMVNALCKD---------------RKFENVMFFLSDMEGKGVFADIVT 294

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN LI     + + +EA ++       G +P + TYN I+    + G Y+  + V  EM+
Sbjct: 295 YNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEML 354

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           + G  P+  +Y  L+  +  +D   EA +  +EM  +G+   ++ ++     L+R G  Y
Sbjct: 355 QLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLY 414



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 265 VSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           +++ ++M EKG+  ++ T    +  +  + +  KA      M          + N L++ 
Sbjct: 592 LNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDG 651

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             +    ++A +L ++++ R    N+ TY ++L G+C    + EA +V  +MI+ G  PD
Sbjct: 652 YLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPD 711

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
              ++ ++ G +      +A +  + M  +G  P+ R
Sbjct: 712 GATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 54/120 (45%)

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           GL Y+ L++     K   E    ++ + R G   +I+  N ++    +TG  ++  +++ 
Sbjct: 187 GLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYG 246

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           E++R G   +  +  +++  L    +      +L +M  KG+ A ++ YN       R G
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 180/368 (48%), Gaps = 5/368 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N    +S    L  A ++E   S++ EM  +G +    T+   +N    A + + A
Sbjct: 402 GVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELA 461

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +    A V T   ++++  ++ L ++A+  F++++    TPN+ TYT L+  
Sbjct: 462 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA 521

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + + K +  A  ++  M+ +G  P++V ++ +++G  K G+   A ++FE M      P+
Sbjct: 522 YLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 581

Query: 418 VRSYTIMIWKFCKQ-NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           V  Y        ++ N   Y  L+ GF    R++    LL  M   GC P+ + Y+ALI 
Sbjct: 582 VDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALID 641

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L K+ K+ DEA  +  EM   GF  T++TY+ ++  YF+    ++  KV  +M+   C 
Sbjct: 642 GLCKVGKL-DEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCA 700

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P+   YT +I GL    ++ EAYK ++ M EKG +  V+ Y          G+     EL
Sbjct: 701 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 760

Query: 596 AQKMRFSG 603
            ++M   G
Sbjct: 761 LERMGSKG 768



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 40/364 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ +++ L  A + E    + EEM   GL++ + T+ I +++F  A   ++A
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 496

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F  M +      V T   L+    ++K    A  LF+  L     PN+ TY+ L+ G
Sbjct: 497 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 556

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
            C+   + +A +++  M        +D  FK        P+VV +  +L+G  K  +  +
Sbjct: 557 HCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 616

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A KL + M  +G  PN   Y  +I   CK                         Y+ LI 
Sbjct: 617 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLID 676

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
            +   +R D+   +L +M E  C P+ + Y  +I  L K+ K  DEA ++ + M   G +
Sbjct: 677 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK-TDEAYKLMQMMEEKGCQ 735

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++  +   G  E   ++ + M  +G  P+  +Y VLI           A+  
Sbjct: 736 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 795

Query: 561 LEEM 564
           LEEM
Sbjct: 796 LEEM 799



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 161/391 (41%), Gaps = 72/391 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY +++    +A++      + E M  +G L ++ T+   ++    A + +KA
Sbjct: 507 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 566

Query: 299 VAIFELMNKYKFKAGVD----------------TINCLLENLGRSKLPKEAQLLFDKLKH 342
             IFE M   K    VD                T   LL+   +S   +EA+ L D +  
Sbjct: 567 CQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSM 626

Query: 343 R-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK--------------------- 380
               PN   Y  L+ G C+V  L EA  V  EM + GF                      
Sbjct: 627 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 686

Query: 381 --------------PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
                         P+VV +  M++GL K+GK  +A KL ++M+ KG  PNV +YT MI 
Sbjct: 687 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI- 745

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                          GFG   +++   +LL+ M  +G  P+ +TY  LI         D 
Sbjct: 746 --------------DGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDV 791

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  + +EM ++ +      Y  +++ + +     +G  + DE+ +    P  + Y +LI 
Sbjct: 792 AHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG--LLDEIGQDDTAPFLSVYRLLID 849

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            LI   R   A + LEE+      A ++DY+
Sbjct: 850 NLIKAQRLEMALRLLEEV--ATFSATLVDYS 878



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 174/437 (39%), Gaps = 64/437 (14%)

Query: 160 GNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLE 219
           GN +  ++  +  +S+ D R I      +D++F   R  +  L +    LS +LV++VL 
Sbjct: 42  GNVNVHQVVPIITQSSIDARAIADAVTGVDDVFG--RKSQKFLRQFREKLSESLVIEVL- 98

Query: 220 RFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
             R   RP+    FF WAG + G+ H +  YN+++ ++ R    +     L+++ +    
Sbjct: 99  --RLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD--- 153

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
             E F   +N       R  + +I                   LE LGR K         
Sbjct: 154 DKEVFGQFLNVLVRKHCRNGSFSI------------------ALEELGRLK--------- 186

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
                RF P+ +TY  L+  + +   L  A  +  EM     + D          L K+G
Sbjct: 187 ---DFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG 243

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  +A+ L E       + N    T+            YT LI+G       +   D L 
Sbjct: 244 KWREALTLVE-------TENFVPDTVF-----------YTKLISGLCEASLFEEAMDFLN 285

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M    C P+ +TY+ L+     +K      R+   M+  G  P+   +N ++ +Y  +G
Sbjct: 286 RMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSG 345

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL------ISQDRSGEAYKYLEEMLEKGMKA 571
           ++    K+  +M++ G  P    Y +LIG +      ++ D    A K   EML  G+  
Sbjct: 346 DHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVL 405

Query: 572 PVLDYNKFAADLSRAGR 588
             ++ + F   L  AG+
Sbjct: 406 NKINVSSFTRCLCSAGK 422



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 32/346 (9%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++    ++ + E    +L+ M  +G    +  +   ++      +  +A  + 
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
             M+++ F A + T + L++   + K    A  +  K L++   PN+  YT ++ G C+V
Sbjct: 657 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 716

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA ++   M +KG +P+VV +  M++G   IGK    ++L E M +KG +PN  +Y
Sbjct: 717 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 776

Query: 422 TIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            ++I   CK  A                    A Y  +I GF N+  ++ +  LL E+ +
Sbjct: 777 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF-NKEFIESL-GLLDEIGQ 834

Query: 462 RGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQT 516
               P    Y  LI  L+K Q++ + A+R+ +E+  + F  T+     TYN +++S    
Sbjct: 835 DDTAPFLSVYRLLIDNLIKAQRL-EMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLA 891

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              E   +++ EM ++G  P+  S+  LI GL    +  EA   L+
Sbjct: 892 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 937



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 147/366 (40%), Gaps = 16/366 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK--KA 298
           F  +  TYN ++    +A + ++   +  EM    L  M+ F +   A++  K  K  +A
Sbjct: 190 FRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANL-RMDGFTLRCFAYSLCKVGKWREA 248

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + + E  N   F         L+  L  + L +EA    ++++     PN+ TY+ LL G
Sbjct: 249 LTLVETEN---FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCG 305

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
               K L    RV N M+ +G  P     N ++      G  S A KL + M   G  P 
Sbjct: 306 CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPG 365

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              Y I+I   C    ++         N   +D+      EM   G   + +  ++  + 
Sbjct: 366 YVVYNILIGSICGDKDSL---------NFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 416

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      ++A  + +EM+  GF P   TY+ ++         E+   +++EM R G   D
Sbjct: 417 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 476

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT+++          +A K+  EM E G    V+ Y        +A +    +EL +
Sbjct: 477 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 536

Query: 598 KMRFSG 603
            M   G
Sbjct: 537 TMLSEG 542



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 10/195 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY +M+   G   + ET + +LE MG KG+  +  T+++ ++        
Sbjct: 730 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 789

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
             A  + E M +  +         ++E   +  +  E+  L D++    T P L+ Y +L
Sbjct: 790 DVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI--ESLGLLDEIGQDDTAPFLSVYRLL 847

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV----AHNIMLEGLLKIGKRSDAIKLFEVMK 410
           +    + + L  A R+  E+    F   +V     +N ++E L    K   A +LF  M 
Sbjct: 848 IDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 905

Query: 411 AKGPSPNVRSYTIMI 425
            KG  P ++S+  +I
Sbjct: 906 KKGVIPEMQSFCSLI 920


>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 188/404 (46%), Gaps = 21/404 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           ++  L   GI+LS ++V DVL R   +      FF WA  +PG + +  +Y  ++  LGR
Sbjct: 99  IQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFFNWAIREPGVSKDVDSYCVILRALGR 158

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            + F  M+ +L  M  +G+   +    IAM++F  A   ++A+ +FE    Y  K   ++
Sbjct: 159 RKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVRAHYVRRAIELFEESESYGVKCSTES 218

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            N LL  L        A  +F+  K +   +  +Y +++ GW ++  +    +V  EM++
Sbjct: 219 FNALLRCLCERSHVSAANSVFNAKKGKIPFDSCSYNIMISGWSKLGEIEGMEKVLKEMVE 278

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------- 428
            GF PD ++++ ++EGL + G+ +D++++F+ MK KG   +   Y  MI  F        
Sbjct: 279 GGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNMKHKGSVLDANVYNAMICNFISARDFDE 338

Query: 429 ------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C+ N   Y+ L++G    R++    ++ +EM  RG  P      + +K
Sbjct: 339 SMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGILPTTGLVTSFLK 398

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +     P  A+ IY++  ++G + +   Y +++K   + G   M   VWDEM   G   
Sbjct: 399 PLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQECGYPS 458

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           D   Y  ++ GL        A   +EE + KG       Y++ +
Sbjct: 459 DVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLS 502



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 155/349 (44%), Gaps = 28/349 (8%)

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFK-----AGVD-TINCLLENLGRSKLPKEAQLL 336
           ++++++F +  E+ + V + +L  K   +      G+D +I+ + + L R  L  EA + 
Sbjct: 72  QVSIDSFLSPAEKLRGVFLQKLKGKSAIQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVT 131

Query: 337 FDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           F     R    + ++ +Y V+L    R K       V   M+ +G  PD+    I ++  
Sbjct: 132 FFNWAIREPGVSKDVDSYCVILRALGRRKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSF 191

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAA 434
           ++      AI+LFE  ++ G   +  S+  ++   C++                   ++ 
Sbjct: 192 VRAHYVRRAIELFEESESYGVKCSTESFNALLRCLCERSHVSAANSVFNAKKGKIPFDSC 251

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  +I+G+     ++ +  +LKEM E G  PD L+Y+ LI+ +      +++V I+  M
Sbjct: 252 SYNIMISGWSKLGEIEGMEKVLKEMVEGGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNM 311

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G     + YN ++ ++    +++   + +  M+   C P+  +Y+ L+ GLI   + 
Sbjct: 312 KHKGSVLDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKV 371

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +A +  EEML +G+         F   L   G  +    + QK R +G
Sbjct: 372 SDALEIFEEMLSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAG 420


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 181/377 (48%), Gaps = 32/377 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G   N  T N M++ L + R+FE ++  L +M  KG+ + + T+   +NA+      +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 297 KAVAIFELMNKYK---FKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYT 352
           +A   F+L+N +     + G+ T N +L  L +  K  +   +L + L+   TPN  TY 
Sbjct: 310 EA---FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            LL   CR  N++EA  +++EM  +G  PD+V+ + ++  L + G    A+  F  M+  
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426

Query: 413 GPSPNVRSYTIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIV 452
           G  P+   YTI+I  FC+  A                      Y   + G   ++     
Sbjct: 427 GIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADA 486

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L  EM ERG  PD  T+  LI+        D+A+ +++ MVR+  KP   TYN ++  
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 513 YFQTGNYEMGR--KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           + + G  EMGR  ++WD+MIR+   PD  SY  ++ G  S     EA    ++MLEKG++
Sbjct: 547 FCKAG--EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIR 604

Query: 571 APVLDYNKFAADLSRAG 587
             ++  N       R+G
Sbjct: 605 PNLVTCNTLIKGYCRSG 621



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 22/345 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELM 305
           +++S++ +L R       +    EM   G++     + I ++ F        A+ + + M
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                   V T N  L  L + K+  +A +LF+++  R   P+  T+T L+ G+C+  N+
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  ++  M+    KPD V +N +++G  K G+   A +L++ M  K   P+  SY  +
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 425 IWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  FC                    + N      LI G+     M   Y+ L +M   G 
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  +YN LI     +   ++A  +  EM + G +  I TYN+I+  +   G  +   +
Sbjct: 639 IPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           V  +MI  G  PD  +Y+ LI G +SQD   EA+++ +EML++G+
Sbjct: 699 VLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+ ++ L + + F     +  EM E+G++    TF   +  +       KA+ +FE M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 306 NKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   K    T N L++   ++ ++ +  +L  D ++    P+  +Y  +L G+C    L
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLL 588

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  + ++M++KG +P++V  N +++G  + G    A +    M + G  P+  SY   
Sbjct: 589 PEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYN-- 646

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                         LI G+     ++  + L+ EME+RG   + +TYN ++     +   
Sbjct: 647 -------------TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA ++ ++M+  G  P   TY+ ++  +    N +   +  DEM++RG  PDD
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 184/435 (42%), Gaps = 51/435 (11%)

Query: 191 LFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-DKPGFAHNSRTYN 249
           LF+L +N  + L +  + LS +L++ VL R R       +F        P F H+S + +
Sbjct: 80  LFTLKQNNVSYLRDSLLRLSPSLLLQVLFRCRGDLHLGLKFIGLVSYHFPNFKHSSLSLS 139

Query: 250 SMMSILGRARQF----------------------ETMVSMLEEMGEKGLLSMETFKIAMN 287
           +M+  L R R+                       E+++S     G  GL+    + + + 
Sbjct: 140 AMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLI----YDLLVR 195

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTP 346
            +  AK+ ++    F+++ +      ++  N LL  L R+     A  ++ + ++     
Sbjct: 196 TYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIEL 255

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ T  +++   C+ +         ++M  KG   D+V +N ++    + G   +A +L 
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
               ++G  P + +Y  +++  CK                     NAA Y  L+     R
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR 375

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +    ++  EM  RG  PD +++++LI ++       +A+  ++EM RSG  P    Y
Sbjct: 376 DNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIY 435

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            +++  + + G      K+ DEM+ RGC  D  +Y   + GL  +    +A     EM+E
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 567 KGMKAPVLDYNKFAA 581
           +GM   V D+  F  
Sbjct: 496 RGM---VPDFYTFTT 507



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 154/353 (43%), Gaps = 24/353 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ TYN+++  + R         + +EM  +G+L  + +F   +   A      +A
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           +  F  M +            L++   R+    +A  + D++  R    ++ TY   L G
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ K   +A  ++NEM+++G  PD      ++ G  K G    A+ LFE M      P+
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I  FCK                     +   Y  ++ GF +   +    +L  
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M E+G  P+ +T N LIK   +   MP +A     +M+ +G  P   +YN ++  Y + 
Sbjct: 597 QMLEKGIRPNLVTCNTLIKGYCRSGDMP-KAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            N E    + +EM +RG   +  +Y +++ G  ++ +  EA + L +M+E G+
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGI 708



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y +L+  + + K L E    +  +  KG    + A N +L GL++ G    A +++  + 
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G   NV +  IM+   CK                R+ + V   L +ME +G   D +T
Sbjct: 250 RGGIELNVYTLNIMVNALCKD---------------RKFENVMFFLSDMEGKGVFADIVT 294

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN LI     + + +EA ++       G +P + TYN I+    + G Y+  + V  EM+
Sbjct: 295 YNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEML 354

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           + G  P+  +Y  L+  +  +D   EA +  +EM  +G+   ++ ++     L+R G  Y
Sbjct: 355 QLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLY 414



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 265 VSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           +++ ++M EKG+  ++ T    +  +  + +  KA      M          + N L++ 
Sbjct: 592 LNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDG 651

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             +    ++A +L ++++ R    N+ TY ++L G+C    + EA +V  +MI+ G  PD
Sbjct: 652 YLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPD 711

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
              ++ ++ G +      +A +  + M  +G  P+ R
Sbjct: 712 GATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 54/120 (45%)

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           GL Y+ L++     K   E    ++ + R G   +I+  N ++    +TG  ++  +++ 
Sbjct: 187 GLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYG 246

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           E++R G   +  +  +++  L    +      +L +M  KG+ A ++ YN       R G
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 173/370 (46%), Gaps = 25/370 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  N  TY  +M  L +  + +   ++L ++    ++   T    +N F       +A 
Sbjct: 310 GFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTL---VNGFVRNGRLNEAT 366

Query: 300 A-IFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           A +++ M    +   V T + L+  L +  L   A +L+ D       PNL TYT+L+ G
Sbjct: 367 AFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDG 426

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   L EAG +  EM+ KGF  + V +N ++  L K GK  +A+ +F  M +KG  P+
Sbjct: 427 FCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPD 486

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + ++  +I+  C+                     N+  +  LI  F  R  +     L+ 
Sbjct: 487 IFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVN 546

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M  RGCP D +TYN LIK +      ++ + +++EM+R G  P+I T N+++  +   G
Sbjct: 547 DMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAG 606

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                 +   +MI RG  PD  +Y  LI GL  + R  EA    E++  +G++   + YN
Sbjct: 607 KVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYN 666

Query: 578 KFAADLSRAG 587
                L R G
Sbjct: 667 TLICWLCREG 676



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 178/385 (46%), Gaps = 28/385 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAM 286
           +   F WAG + G+ H+   Y  ++  LG A  F+ +  +L +M E+G++  E+ F + M
Sbjct: 87  SMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIM 146

Query: 287 NAFAAAKERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRF 344
             +  A    +A   + ++   Y  +    + N +L+ L     P  A  + +D L    
Sbjct: 147 KYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGV 206

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +PN  T+ +++   C V  +  A  +  +M   G  P+ + +  +++ L K  +  +A+K
Sbjct: 207 SPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALK 266

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV--------------------YTCLITGFG 444
           L E M   G  P+V ++  +I+ FC+ N  +                    Y  L+ G  
Sbjct: 267 LLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLC 326

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
              R+D    LL ++      P+ + +N L+   ++  ++ +    +Y +M+ +G+ P +
Sbjct: 327 KTCRIDEAQALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDV 382

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            T++ ++    + G +    ++ ++M  +GC P+ N+YT+LI G   + +  EA   L E
Sbjct: 383 FTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILRE 442

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           ML KG     + YN   + L + G+
Sbjct: 443 MLTKGFSLNTVGYNALISALCKHGK 467



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF+ N+  YN+++S L +  +    + M  EM  KG    + TF   +       E + A
Sbjct: 447 GFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDA 506

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGG 357
           +A++  M      A   T N L+    R    +EA  L + +  R  P +  TY  L+  
Sbjct: 507 LALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKA 566

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + +   ++ EMI KG  P ++  NI++ G    GK  +A++    M  +G SP+
Sbjct: 567 LCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPD 626

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y  +I   CK               R R+    +L ++++  G  PD +TYN LI  
Sbjct: 627 IVTYNSLINGLCK---------------RGRIQEALNLFEKLQAEGIQPDSITYNTLICW 671

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           +  +   D+A  +    V +GF P   T+N+++ ++ +  N E
Sbjct: 672 LCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSE 714



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%)

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P   +YN ++ ++ +   P  A  ++ +M+  G  P  +T+ ++MK+       +   
Sbjct: 171 CEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNAC 230

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M + GC P+   Y  LI  L  +DR  EA K LEEM   G    V  +N      
Sbjct: 231 LLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            R  R     +L  +M   G
Sbjct: 291 CRLNRVLEGAKLVDRMILKG 310


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 172/356 (48%), Gaps = 33/356 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            Y++++  L RARQF+    ++ +    G  S  +F +    + AA   ++AV  F+ M 
Sbjct: 122 AYDAVVDALARARQFDAAWRVVVDASADGAASPRSFAVLARRYVAAGMTRQAVRAFDDME 181

Query: 307 KYKFK-AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
            +  + A       LL+ L + K PK A  +F+K K+++ PN   YT+L+ GWC+V    
Sbjct: 182 AFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRKYKYNPNEKMYTILIYGWCKVNRND 241

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGL-----LKIGKRSD-----AIKLFEVMKAKGPS 415
            A +   +M+D G +P++V +NI+L G+     L    R D     A  + + M+ +G  
Sbjct: 242 MARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHSAEDVLKEMRDRGIE 301

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           P+V SY+I++  + + +                     A YT +I    +  R++    L
Sbjct: 302 PDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAETL 361

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSY 513
           L EM   G  P   TYN   K  + +     A+++Y +M + G    P IHTYN+++  +
Sbjct: 362 LDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPGSLTAPDIHTYNILLGMF 421

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +   +   + +W +M      PD +SYT+LI G  +  +  EA ++  EM+EKG 
Sbjct: 422 IKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQKWREACQFFMEMIEKGF 477



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 30/234 (12%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           +L+ L K      A ++F   K K  +PN + YTI+I+ +CK N               R
Sbjct: 196 LLDTLCKYKYPKVATEIFNKRKYKY-NPNEKMYTILIYGWCKVN---------------R 239

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLM----------KIQKMPDEAVRIYKEMVRSG 498
            D+    LK+M + G  P+ +TYN L+  +          +  +    A  + KEM   G
Sbjct: 240 NDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHSAEDVLKEMRDRG 299

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P + +Y++I+  Y +    E+   ++  M  RG CP   +YT +I  L S  R  +A 
Sbjct: 300 IEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAE 359

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD--ELAQKMRFSGKFEVSNV 610
             L+EM+ +G+      YN F  +    GR+ V    +L  KM+  G     ++
Sbjct: 360 TLLDEMVAEGVCPSPATYNCFFKEYR--GRNDVSGALQLYNKMKQPGSLTAPDI 411



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  +Y+ ++ +  RA + E  V M   M ++G+  ++ T+   +   A+    + A
Sbjct: 299 GIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDA 358

Query: 299 VAIFELMNKYKFKAGVDTINCLL-ENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVL 354
             + + M          T NC   E  GR+ +    QL ++K+K   +   P++ TY +L
Sbjct: 359 ETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQL-YNKMKQPGSLTAPDIHTYNIL 417

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           LG + ++        +W++M +    PD+ ++ +++ G     K  +A + F  M  KG 
Sbjct: 418 LGMFIKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQKWREACQFFMEMIEKGF 477

Query: 415 SPN 417
            P 
Sbjct: 478 LPQ 480



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 14/165 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      TY S++  L    + E   ++L+EM  +G+  S  T+      +   + R   
Sbjct: 334 GICPTVATYTSVIKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEY---RGRNDV 390

Query: 299 VAIFELMNKYKFKAG-----VDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTT 350
               +L NK K         + T N LL     L R    K+  +  D  +    P+L +
Sbjct: 391 SGALQLYNKMKQPGSLTAPDIHTYNILLGMFIKLNRHGSVKD--IWSDMCESTVGPDLDS 448

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           YT+L+ G+C  +   EA + + EMI+KGF P  +    +  GL++
Sbjct: 449 YTLLIHGFCASQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQ 493


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 193/405 (47%), Gaps = 25/405 (6%)

Query: 189 DELFSLDRNMEAVLDECGINLS---HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNS 245
           +E F++ R ME   ++ G+  S   HNLV+  L +          F     +  G   + 
Sbjct: 111 EEAFAVIREME---EDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTN--GCTIDI 165

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
            TY +++  L + ++ +  V+++E++   G   ++ T+   +N        ++A+ +   
Sbjct: 166 HTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRK 225

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           +        V T   L++ LG+ K   EA  LF ++  R    +   YT L+ G  +   
Sbjct: 226 IVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGK 285

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  V+  M  +G  PDVV  + M++GL K G+   A+++F+ M+A+G +PN      
Sbjct: 286 IPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN------ 339

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                      VY+ LI G    R+MD   ++L +M++  C PD +TYN LI  +     
Sbjct: 340 ---------EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 390

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            + A   + EM+ +G KP ++TYN+++  + + GN +    V+D+M    C P+  +Y  
Sbjct: 391 VEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGT 450

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           LI GL  + +  +A  Y + M E+G       Y+     L ++G+
Sbjct: 451 LISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 155/336 (46%), Gaps = 24/336 (7%)

Query: 289 FAAAKERKKAVAIFELMN--KYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFT 345
           F   K+   A  +F+ ++  ++ F+  V T N LL+   R+K  +EA  LL ++L   F 
Sbjct: 32  FQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFL 91

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           P++ T+ VL+ G+C  +   EA  V  EM  D G  P +  HN++L GL K GK   A+ 
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 405 LFEVMKAKGPSPNVRSYTIMI-W-------------------KFCKQNAAVYTCLITGFG 444
            FE     G + ++ +YT ++ W                     C    A Y  L+ G  
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              R++   DLL+++ + GC PD +TY +LI  +  +K   EA +++KEM   G      
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            Y  +++   Q G       V+  M  +GC PD  + + +I GL    R G A +  + M
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             +G+    + Y+     L +A +     E+  +M+
Sbjct: 332 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 367



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 192/447 (42%), Gaps = 60/447 (13%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +EA +      +S + VV + +  + A      F C +  + GF H+  T N+++ +  R
Sbjct: 12  IEAAVGRLRREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFAR 71

Query: 258 ARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVD 315
            ++     ++L+ E+    L  +ET+ + +  +  A+E ++A A+  E+   Y     + 
Sbjct: 72  TKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLK 131

Query: 316 TINCLLENLGRS-----------------------------------KLPKEAQLLFDKL 340
           T N +L  L +S                                   K  ++A  L +K+
Sbjct: 132 THNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKI 191

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             +  TP + TY  LL G C++  L EA  +  +++D G  PDVV +  +++GL K  + 
Sbjct: 192 TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRS 251

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCL 439
            +A KLF+ M  +G   +   YT +I                       C  +    + +
Sbjct: 252 FEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 311

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSG 498
           I G     R+     + K ME RG  P+ + Y+ALI  L K +KM D A+ +  +M ++ 
Sbjct: 312 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM-DCALEMLAQMKKAF 370

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P   TYN+++    ++G+ E  R  +DEM+  GC PD  +Y +L+ G      +  A 
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAAC 430

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSR 585
              ++M        V+ Y    + L +
Sbjct: 431 GVFDDMSSSHCSPNVVTYGTLISGLCK 457



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 155/351 (44%), Gaps = 19/351 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TY S++  LG+ ++      + +EM  +GL L    +   +     A +  +A
Sbjct: 230 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQA 289

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            ++++ M        V T++ +++ L ++     A  +F  ++ R   PN   Y+ L+ G
Sbjct: 290 SSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 349

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ + +  A  +  +M      PD + +NI+++GL K G    A   F+ M   G  P+
Sbjct: 350 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 409

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y I++  FCK             GN      V+D   +M    C P+ +TY  LI  
Sbjct: 410 VYTYNILVSGFCKA------------GNTDAACGVFD---DMSSSHCSPNVVTYGTLISG 454

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  ++   +A   ++ M   G  P    Y+ ++    ++G  E G  ++DEM R G   +
Sbjct: 455 LCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG-VAN 513

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             + T LI  L   +R  EA      + ++GM  P   YN   + L ++ +
Sbjct: 514 SQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP-YAYNSIISTLIKSAK 563



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 16/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           GF+  V   N +L+   +  +  +A  L +   A    P+V ++ +              
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNV-------------- 99

Query: 438 CLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
            LITG+   R  +  + +++EMEE  G  P   T+N ++  +        A+  ++    
Sbjct: 100 -LITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTT 158

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
           +G    IHTY  I+    +    +    + +++   GC P   +Y  L+ GL    R  E
Sbjct: 159 NGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 218

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A   L ++++ G    V+ Y      L +  RS+   +L ++M   G
Sbjct: 219 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 265


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 164/328 (50%), Gaps = 17/328 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  +YN +++ L R    +    +LEEMG KG    E T+   +N +       +A
Sbjct: 279 GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 338

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I   M +      V T   L+ ++ +++    A   FD+++ R   PN  TYT L+ G
Sbjct: 339 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   L EA R+ NEM + GF P VV +N  + G   + +  +A+ + + M  KG +P+
Sbjct: 399 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY+ +I  FC++                 +D  + + +EM E+G  PD +TY++LI+ 
Sbjct: 459 VVSYSTIISGFCRKG---------------ELDRAFQMKQEMVEKGVSPDAVTYSSLIQG 503

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   +   EA  + +EM+  G  P   TY  ++ +Y   G+      + DEMI +G  PD
Sbjct: 504 LCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 563

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +Y+VLI GL  Q R+ EA + L +++
Sbjct: 564 AVTYSVLINGLNKQARTREAKRLLFKLI 591



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 178/391 (45%), Gaps = 36/391 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-----METFKIAMNAFAAAKE 294
           GF     +YNS++  + R+R    + +  EE+  + + S     + T+ I +  F +  E
Sbjct: 172 GFMPGVLSYNSVLDAIVRSRGSVKLSA--EEVYREMIRSRVSPNVYTYNILIRGFCSVGE 229

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
            +K +  F  M +      V T N L++   +     EA  L   +  +   PNL +Y V
Sbjct: 230 LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNV 289

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G CR  ++ EA  +  EM  KGF PD V +N +L G  K G    A+ +   M   G
Sbjct: 290 IINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG 349

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            SP+V +YT +I   CK                     N   YT LI GF  +  ++  Y
Sbjct: 350 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAY 409

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            +L EM E G  P  +TYNA I    + +  +EA+ + +EMV  G  P + +Y+ I+  +
Sbjct: 410 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  +   ++  EM+ +G  PD  +Y+ LI GL    R  EA    +EML+ G+    
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 574 LDYNKFA------ADLSRAGRSYVLDELAQK 598
             Y           DL++A   ++ DE+  K
Sbjct: 530 FTYTTLINAYCVEGDLNKA--LHLHDEMIHK 558



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 194/459 (42%), Gaps = 77/459 (16%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           I+  CK+  IDE F L ++M +   +  + +S+N++++ L R   + + A+      G K
Sbjct: 256 IDAYCKMGRIDEAFGLLKSMSSKGMQPNL-ISYNVIINGLCR-EGSMKEAWEILEEMGYK 313

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
            GF  +  TYN++++   +   F   + +  EM   G+  S+ T+   +N+   A+   +
Sbjct: 314 -GFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 372

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A+  F+ M     +    T   L++   R  L  EA  + +++    F+P++ TY   + 
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C ++ + EA  V  EM++KG  PDVV+++ ++ G  + G+   A ++ + M  KG SP
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           +  +Y+ +I   C+                     +   YT LI  +     ++    L 
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 552

Query: 457 KEMEERGCPPDGLTYNALI-----------------KLMKIQKMPD-------------- 485
            EM  +G  PD +TY+ LI                 KL+  + +P               
Sbjct: 553 DEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNI 612

Query: 486 -------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
                              EA R+++ MV    KP    YN+I+  + + GN      ++
Sbjct: 613 EFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLY 672

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            EMI  G  P   +   LI  L  +  + E  + + + L
Sbjct: 673 KEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 711



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 161/396 (40%), Gaps = 83/396 (20%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-----EKGLLSMETF 282
             +F  WA + P F  + +  +  + IL R + ++T  ++ +E+        G    +  
Sbjct: 74  TLKFLTWARNHPFFDSHCKCLS--LHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCL 131

Query: 283 KIAMNAFAAAKERKKAVAIFELMNK-YKFKAGVD-TINCLLENLGRSKLPKEAQLLFDKL 340
           K + + + ++       A+F+LM K Y     +D  +N +  NL +S             
Sbjct: 132 KDSYHVYNSSS------AVFDLMVKSYSHLNMIDQAVNTI--NLAKSS------------ 171

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNL--MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
              F P + +Y  +L    R +    + A  V+ EMI     P+V  +NI++ G   +G+
Sbjct: 172 --GFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGE 229

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
               +  F  M+  G  PNV +Y  +I  +CK                 R+D  + LLK 
Sbjct: 230 LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG---------------RIDEAFGLLKS 274

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  +G  P+ ++YN +I  +  +    EA  I +EM   GF P   TYN ++  Y + GN
Sbjct: 275 MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 334

Query: 519 YEMGRKVWDEMIR-----------------------------------RGCCPDDNSYTV 543
           +     +  EM+R                                   RG  P++ +YT 
Sbjct: 335 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           LI G   Q    EAY+ L EM E G    V+ YN F
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 430



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 38/345 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           GF+ +  TYN+ +       + E  + +++EM EKGL   + ++   ++ F    E  +A
Sbjct: 419 GFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRA 478

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M +        T + L++ L   +   EA  L  + L     P+  TYT L+  
Sbjct: 479 FQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 538

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL-FEVMKAKGPSP 416
           +C   +L +A  + +EMI KGF PD V +++++ GL K  +  +A +L F+++  +    
Sbjct: 539 YCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS 598

Query: 417 NV--------------RSYTIMIWKFC--------------------KQNAAVYTCLITG 442
           +V              +S   +I  FC                    K   AVY  +I G
Sbjct: 599 DVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHG 658

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                 +   ++L KEM   G  P  +T   LIK +  + M +E   +  + +RS     
Sbjct: 659 HCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNE 718

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
                ++++   + GN E    V  +M + G  P+    T   GG
Sbjct: 719 AELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPNSGK-TAYAGG 762


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 171/353 (48%), Gaps = 20/353 (5%)

Query: 240 GFAHNSRTYNSMMS---ILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           G + N  TYN+++     +G+  +     ++L+EM   G+   E TF I ++ F   K  
Sbjct: 193 GVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNV 252

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             A+ +F  MN+   K  V T N L+  L  +    EA  L D++ +    PN+ T+  L
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNAL 312

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G+C+ K + +AG ++++M  +G  P+V  +NI+++   K     DA  L+ +M  KG 
Sbjct: 313 LNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGV 372

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P+V               + Y CLI G   +  ++   +L+ EM+ +    D +TYN L
Sbjct: 373 CPDV---------------STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNIL 417

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +  +    +A+R+  EM R G KP+  TYN ++  Y + GN      +  +M + G 
Sbjct: 418 IDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGR 477

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +  +Y VLI G   +D+  +A   L EMLEKG+    + Y     ++   G
Sbjct: 478 LANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 187/405 (46%), Gaps = 26/405 (6%)

Query: 210 SHNLVVDVLERFRHAR----RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           +++++VD+L  + +A+    R  F  F  A D  G   +  + N +MS L +  +   M 
Sbjct: 91  ANSIIVDIL-VWAYAKNLRTRLGFEAFKRASDY-GLKLSVTSCNPLMSGLVKVGEIGDME 148

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN- 323
            + +EM  + +  ++ +F I +N      +  KA  I E M      A V T N L++  
Sbjct: 149 FVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208

Query: 324 --LGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
             +G+  K+ K   +L +       PN  T+ +L+ G+C+ KN+  A +V+ EM  +G K
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVK 268

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P+VV +N ++ GL   GK ++A  L + M      PN+ ++  ++  FCK          
Sbjct: 269 PNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKN--------- 319

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
                 + +    +L  +M ++G  P+  TYN LI      +  ++A  +Y+ M+  G  
Sbjct: 320 ------KMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVC 373

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TYN ++    + G+ E  R +  EM  +    D  +Y +LI  L ++    +A + 
Sbjct: 374 PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRL 433

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           L+EM  KG+K   L YN       + G       L  +M   G+ 
Sbjct: 434 LDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRL 478



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 122/317 (38%), Gaps = 62/317 (19%)

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME--AGRVWNEMIDKGFKPDVVAHNI 388
           ++ Q+L       F  N     +L+  W   KNL        +    D G K  V + N 
Sbjct: 76  EQTQILLSVSGDSFCANSIIVDILV--WAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNP 133

Query: 389 MLEGLLKIGKRSD-----------------------------------AIKLFEVMKAKG 413
           ++ GL+K+G+  D                                   A  + E MK +G
Sbjct: 134 LMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRG 193

Query: 414 PSPNVRSYTIMIWKFCKQ-----------------------NAAVYTCLITGFGNRRRMD 450
            S NV +Y  +I  +CK                        N   +  LI GF   + + 
Sbjct: 194 VSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVS 253

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
               +  EM  +G  P+ +TYN+LI  +      +EA  +  +MV S  KP I T+N ++
Sbjct: 254 AAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALL 313

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             + +    +   +++D+M ++G  P+  +Y +LI      +   +A+     ML KG+ 
Sbjct: 314 NGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVC 373

Query: 571 APVLDYNKFAADLSRAG 587
             V  YN   A L R G
Sbjct: 374 PDVSTYNCLIAGLCRKG 390



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  TYN +++ L R    E   +++ EM  K L + + T+ I +++     E KKA
Sbjct: 371 GVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKA 430

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + + + M +   K    T N +++   +    + A  L  ++ K     N+ TY VL+ G
Sbjct: 431 LRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKG 490

Query: 358 WCRVKNLMEAGRVWNEMIDKG-------------------FKPDVVAH 386
           +C+   L +A  + NEM++KG                   F PD+  H
Sbjct: 491 FCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGH 538


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 185/385 (48%), Gaps = 30/385 (7%)

Query: 228 AFRFF---CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI 284
            F+F     + GD P     +        I G+ ++   ++ +LE+ G   +  + T+ +
Sbjct: 133 GFKFLESMVYRGDIPDIIPCTSLIRGFCRI-GKTKKATWVMEILEQSG--AVPDVITYNV 189

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHR 343
            ++ +  + E   A+ + + MN       V T N +L  L  S KL +  ++L  +L+  
Sbjct: 190 LISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE 246

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P++ TYT+L+   C+   + +A ++ +EM +KG KPDVV +N+++ G+ K G+  +AI
Sbjct: 247 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAI 306

Query: 404 KLFEVMKAKGPSPNVRSYTI--------------------MIWKFCKQNAAVYTCLITGF 443
           K    M + G  PNV ++ I                    M+ K C  +   +  LI   
Sbjct: 307 KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 366

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             +  +    D+L++M   GC P+ L+YN L+     +K  D A+     MV  G  P I
Sbjct: 367 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 426

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TYN ++ +  + G  ++  ++ +++  +GC P   +Y  +I GL    ++  A K L+E
Sbjct: 427 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 486

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M  KG+K  ++ Y+   + LSR G+
Sbjct: 487 MRRKGLKPDIITYSSLVSGLSREGK 511



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 180/391 (46%), Gaps = 35/391 (8%)

Query: 229 FRFFCWAG------------DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
            R FC  G            ++ G   +  TYN ++S   ++ + +  + +L+ M     
Sbjct: 156 IRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAP- 214

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             + T+   +     + + K+A+ + +   + +    V T   L+E   +     +A  L
Sbjct: 215 -DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 273

Query: 337 FDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            D+++++ + P++ TY VL+ G C+   L EA +  N M   G +P+V+ HNI+L  +  
Sbjct: 274 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 333

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAV 435
            G+  DA KL   M  KG SP+V ++ I+I   C+Q                    N+  
Sbjct: 334 TGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLS 393

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  L+ GF   ++MD   + L  M  RGC PD +TYN L+  +      D AV I  ++ 
Sbjct: 394 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 453

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + TYN ++    + G  E   K+ DEM R+G  PD  +Y+ L+ GL  + +  
Sbjct: 454 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVD 513

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           EA K+  ++   G++   + YN     L ++
Sbjct: 514 EAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 544



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 167/373 (44%), Gaps = 22/373 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKER 295
           D+   A +  TYN+++  L  + + +  + +L+ ++ ++    + T+ I + A       
Sbjct: 208 DRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGV 267

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            +A+ + + M     K  V T N L+  + +  +L +  + L +   +   PN+ T+ ++
Sbjct: 268 GQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 327

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L   C     M+A ++ ++M+ KG  P VV  NI++  L + G    AI + E M   G 
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 387

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
           +PN  SY  ++  FCK+                    +   Y  L+T      ++D+  +
Sbjct: 388 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 447

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L ++  +GC P  +TYN +I  +      + A+++  EM R G KP I TY+ ++    
Sbjct: 448 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 507

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +   K + ++   G  P+  +Y  ++ GL    ++  A  +L  M+ K  K    
Sbjct: 508 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 567

Query: 575 DYNKFAADLSRAG 587
            Y      ++  G
Sbjct: 568 TYTILIEGIAYEG 580



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 21/336 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKE 294
           G KP       TYN +++ + +  + +  +  L  M   G   ++ T  I + +  +   
Sbjct: 281 GSKPDVV----TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTV 353
              A  +   M +      V T N L+  L R  L   A  + +K+  H  TPN  +Y  
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 396

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           LL G+C+ K +  A    + M+ +G  PD+V +N +L  L K GK   A+++   + +KG
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 456

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            SP      ++I          Y  +I G     + +    LL EM  +G  PD +TY++
Sbjct: 457 CSP------VLI---------TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS 501

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+  +  +   DEA++ + ++   G +P   TYN IM    ++   +        MI + 
Sbjct: 502 LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 561

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           C P + +YT+LI G+  +  + EA   L E+  +G+
Sbjct: 562 CKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 52/268 (19%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +  +    M+ +G  PD++    ++ G  +IGK   A  + E+++  G  P+V +Y +
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 189

Query: 424 MIWKFCKQ---------------------------------------------------- 431
           +I  +CK                                                     
Sbjct: 190 LISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYP 249

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +   YT LI        +     LL EM  +G  PD +TYN LI  +  +   DEA++  
Sbjct: 250 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 309

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             M   G +P + T+N+I++S   TG +    K+  +M+R+GC P   ++ +LI  L  Q
Sbjct: 310 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 369

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
              G A   LE+M   G     L YN  
Sbjct: 370 GLLGRAIDILEKMPMHGCTPNSLSYNPL 397



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L  L++ G+  D  K  E M  +G  P++   T +I  FC+             G  ++ 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCR------------IGKTKKA 168

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
             V ++L   E+ G  PD +TYN LI         D A+++   M      P + TYN I
Sbjct: 169 TWVMEIL---EQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTI 222

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +++   +G  +   +V D  +++ C PD  +YT+LI     +   G+A K L+EM  KG 
Sbjct: 223 LRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS 282

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDE 594
           K  V+ YN     + + GR   LDE
Sbjct: 283 KPDVVTYNVLINGICKEGR---LDE 304


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 202/449 (44%), Gaps = 47/449 (10%)

Query: 189 DELFSLDRNMEAVLDECGI-------NLSHNLVVD----VLERFRHARRPAFRFFCWAGD 237
           DE+ S+   ++ ++DE G+       N   NL+VD     L    HA+        W G 
Sbjct: 135 DEILSV---VDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSV-----W-GI 185

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           KP  +    T+N ++  L RA Q    + MLE+M   GL+  E TF   M  +    +  
Sbjct: 186 KPDVS----TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLD 241

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVL 354
            A+ I E M ++       ++N ++    +    ++A     ++ ++  F P+  T+  L
Sbjct: 242 GALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTL 301

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+  ++  A  + + M+ +G+ PDV  +N ++ GL K+G+  +A+++ + M  +  
Sbjct: 302 VNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361

Query: 415 SPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYD 454
           SPN  +Y  +I   CK+N                       +  LI G    R   +  +
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L +EM  +GC PD  TYN LI  +  +   DEA+ + K+M  SG   ++ TYN ++  + 
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +        +++DEM   G   +  +Y  LI GL    R  +A + +++M+ +G K    
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            YN       R G      ++ Q M  +G
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNG 570



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 188/435 (43%), Gaps = 59/435 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAM 286
           A R F  A  KP F+     Y  ++  LGR+  F+ M  +LE+M   +  +   TF I +
Sbjct: 66  ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILI 125

Query: 287 NAFAAAKERKKAVAIFEL------------------------------------MNKYKF 310
            ++A  + + + +++ +                                     M+ +  
Sbjct: 126 ESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGI 185

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           K  V T N L++ L R+   + A L+ + +  +   P+  T+T ++ G+    +L  A R
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVRSYTIMIWKF 428
           +  +M++ G     V+ N+++ G  K G+  DA+   + M  + G  P+  ++  ++   
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305

Query: 429 CKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           CK                     +   Y  +I+G      +    ++L +M  R C P+ 
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN LI  +  +   +EA  + + +   G  P + T+N +++    T N+ +  ++++E
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE 425

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M  +GC PD+ +Y +LI  L S+ +  EA   L++M   G    V+ YN       +A +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

Query: 589 SYVLDELAQKMRFSG 603
           +   +E+  +M   G
Sbjct: 486 TREAEEIFDEMEVHG 500



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 21/326 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           TF   +N    A   K A+ I ++M +  +   V T N ++  L +    KEA  + D++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R  +PN  TY  L+   C+   + EA  +   +  KG  PDV   N +++GL      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A++LFE M++KG  P+  +Y ++I   C +                    +   Y  L
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I GF    +     ++  EME  G   + +TYN LI  +   +  ++A ++  +M+  G 
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP  +TYN ++  + + G+ +    +   M   GC PD  +Y  LI GL    R   A K
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSR 585
            L  +  KG+      YN     L R
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFR 622



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 24/375 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TYN+++S L +  Q E    +   +  KG+L  + TF   +      +  + A+ +F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 303 ELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           E M     +    T N L+++L  + KL +   +L          ++ TY  L+ G+C+ 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA  +++EM   G   + V +N +++GL K  +  DA +L + M  +G  P+  +Y
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             ++  FC+           G   ++  DIV    + M   GC PD +TY  LI  +   
Sbjct: 544 NSLLTHFCR-----------GGDIKKAADIV----QAMTSNGCEPDIVTYGTLISGLCKA 588

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN-S 540
              + A ++ + +   G   T H YN +++  F+         ++ EM+ +   P D  S
Sbjct: 589 GRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVS 648

Query: 541 YTVLIGGLISQDRS-GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA--- 596
           Y ++  GL +      EA  +L E+LEKG           A  L        L +L    
Sbjct: 649 YRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMV 708

Query: 597 -QKMRFSGKFEVSNV 610
            QK RFS + EVS V
Sbjct: 709 MQKARFSEE-EVSMV 722


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 185/385 (48%), Gaps = 30/385 (7%)

Query: 228 AFRFF---CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI 284
            F+F     + GD P     +        I G+ ++   ++ +LE+ G   +  + T+ +
Sbjct: 76  GFKFLESMVYRGDIPDIIPCTSLIRGFCRI-GKTKKATWVMEILEQSG--AVPDVITYNV 132

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHR 343
            ++ +  + E   A+ + + MN       V T N +L  L  S KL +  ++L  +L+  
Sbjct: 133 LISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE 189

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P++ TYT+L+   C+   + +A ++ +EM +KG KPDVV +N+++ G+ K G+  +AI
Sbjct: 190 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAI 249

Query: 404 KLFEVMKAKGPSPNVRSYTI--------------------MIWKFCKQNAAVYTCLITGF 443
           K    M + G  PNV ++ I                    M+ K C  +   +  LI   
Sbjct: 250 KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 309

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             +  +    D+L++M   GC P+ L+YN L+     +K  D A+     MV  G  P I
Sbjct: 310 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 369

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TYN ++ +  + G  ++  ++ +++  +GC P   +Y  +I GL    ++  A K L+E
Sbjct: 370 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 429

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M  KG+K  ++ Y+   + LSR G+
Sbjct: 430 MRRKGLKPDIITYSSLVSGLSREGK 454



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 180/391 (46%), Gaps = 35/391 (8%)

Query: 229 FRFFCWAG------------DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
            R FC  G            ++ G   +  TYN ++S   ++ + +  + +L+ M     
Sbjct: 99  IRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAP- 157

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             + T+   +     + + K+A+ + +   + +    V T   L+E   +     +A  L
Sbjct: 158 -DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 216

Query: 337 FDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            D+++++ + P++ TY VL+ G C+   L EA +  N M   G +P+V+ HNI+L  +  
Sbjct: 217 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 276

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAV 435
            G+  DA KL   M  KG SP+V ++ I+I   C+Q                    N+  
Sbjct: 277 TGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLS 336

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  L+ GF   ++MD   + L  M  RGC PD +TYN L+  +      D AV I  ++ 
Sbjct: 337 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 396

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + TYN ++    + G  E   K+ DEM R+G  PD  +Y+ L+ GL  + +  
Sbjct: 397 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVD 456

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           EA K+  ++   G++   + YN     L ++
Sbjct: 457 EAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 487



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 167/373 (44%), Gaps = 22/373 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKER 295
           D+   A +  TYN+++  L  + + +  + +L+ ++ ++    + T+ I + A       
Sbjct: 151 DRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGV 210

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            +A+ + + M     K  V T N L+  + +  +L +  + L +   +   PN+ T+ ++
Sbjct: 211 GQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 270

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L   C     M+A ++ ++M+ KG  P VV  NI++  L + G    AI + E M   G 
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 330

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
           +PN  SY  ++  FCK+                    +   Y  L+T      ++D+  +
Sbjct: 331 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 390

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L ++  +GC P  +TYN +I  +      + A+++  EM R G KP I TY+ ++    
Sbjct: 391 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 450

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +   K + ++   G  P+  +Y  ++ GL    ++  A  +L  M+ K  K    
Sbjct: 451 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 510

Query: 575 DYNKFAADLSRAG 587
            Y      ++  G
Sbjct: 511 TYTILIEGIAYEG 523



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 21/336 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKE 294
           G KP       TYN +++ + +  + +  +  L  M   G   ++ T  I + +  +   
Sbjct: 224 GSKPDVV----TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTV 353
              A  +   M +      V T N L+  L R  L   A  + +K+  H  TPN  +Y  
Sbjct: 280 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 339

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           LL G+C+ K +  A    + M+ +G  PD+V +N +L  L K GK   A+++   + +KG
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 399

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            SP      ++I          Y  +I G     + +    LL EM  +G  PD +TY++
Sbjct: 400 CSP------VLI---------TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS 444

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+  +  +   DEA++ + ++   G +P   TYN IM    ++   +        MI + 
Sbjct: 445 LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 504

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           C P + +YT+LI G+  +  + EA   L E+  +G+
Sbjct: 505 CKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 52/268 (19%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +  +    M+ +G  PD++    ++ G  +IGK   A  + E+++  G  P+V +Y +
Sbjct: 73  LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 132

Query: 424 MIWKFCKQ---------------------------------------------------- 431
           +I  +CK                                                     
Sbjct: 133 LISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYP 192

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +   YT LI        +     LL EM  +G  PD +TYN LI  +  +   DEA++  
Sbjct: 193 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 252

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             M   G +P + T+N+I++S   TG +    K+  +M+R+GC P   ++ +LI  L  Q
Sbjct: 253 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 312

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
              G A   LE+M   G     L YN  
Sbjct: 313 GLLGRAIDILEKMPMHGCTPNSLSYNPL 340



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L  L++ G+  D  K  E M  +G  P++   T +I  FC+             G  ++ 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCR------------IGKTKKA 111

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
             V ++L   E+ G  PD +TYN LI         D A+++   M      P + TYN I
Sbjct: 112 TWVMEIL---EQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTI 165

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +++   +G  +   +V D  +++ C PD  +YT+LI     +   G+A K L+EM  KG 
Sbjct: 166 LRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS 225

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDE 594
           K  V+ YN     + + GR   LDE
Sbjct: 226 KPDVVTYNVLINGICKEGR---LDE 247


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 186/413 (45%), Gaps = 25/413 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY ++++   RA++ E  + +LEEM E+G   ++ T+ + ++A         A
Sbjct: 174 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 233

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M +  F   V T N L++    R  +    +LL   +     PN+ TY+ L+ G
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ +  +EA  V  EM  +G  PD   ++ ++ GL K  K  +A ++   M   G +P+
Sbjct: 294 LCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y+ +I  FCK                     +   Y  +I G     ++     +L+
Sbjct: 354 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILE 413

Query: 458 EMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M+E G   PD +TY+ +I  +    M  EA ++   M ++G  P + TY  I+    + 
Sbjct: 414 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 473

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E    +   M R GC P+  +YT LI GL    +  EA + +EEM   G    ++ Y
Sbjct: 474 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 533

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRIE 629
           N     L  +GR     +L Q+M+  G+ E S   A +  T  N +   D ++
Sbjct: 534 NTMVNGLCVSGRIKEAQQLVQRMK-DGRAECSPDAATY-RTIVNALMSSDLVQ 584



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 196/454 (43%), Gaps = 57/454 (12%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWA-GDKPGFAHNSRTYNSMMSILGRARQFETM 264
           G + +  +V  V+   + A+  A  FF WA    PGF+H + ++NS++ +L R ++    
Sbjct: 38  GASTTPRIVGRVVNSLKDAKL-ALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREA 96

Query: 265 VSML-EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF------------- 310
             +   E+       + ++ I ++ F  A +   A+ + E M    F             
Sbjct: 97  GDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITA 156

Query: 311 --KAG-----------------VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
              AG                 V T   L+    R+K  +EA  L ++++ R   PNL T
Sbjct: 157 MANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVT 216

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y VL+   C++  +  A  V  +MI+ GF P+V+  N +++G  K G   DA KL  +M 
Sbjct: 217 YNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMV 276

Query: 411 AKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMD 450
           AKG  PNV +Y+ +I   CK                     +A  Y+ LI G     +++
Sbjct: 277 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIE 336

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
               +L+ M   GC PD + Y+++I          EA +  +EM +    P + TYN ++
Sbjct: 337 EAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI 396

Query: 511 KSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
               + G     + + ++M   G   PD  +Y+ +I GL   D   EA K L+ M + G 
Sbjct: 397 DGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 456

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              V+ Y      L + GR    + L Q M+ +G
Sbjct: 457 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 490



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 167/350 (47%), Gaps = 25/350 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GFA N  T+NS++    +    +    +L  M  KG+  ++ T+   ++    +++  +A
Sbjct: 244 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 303

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + E M          T + L+  L ++   +EA+ +  ++     TP++  Y+ ++  
Sbjct: 304 KEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 363

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-P 416
           +C+   L+EA +   EM  +   PDVV +N +++GL K+GK ++A  + E M+  G   P
Sbjct: 364 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLP 423

Query: 417 NVRSYTIMIWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLL 456
           +V +Y+ +I   CK +  V                    YT +I G     R++    LL
Sbjct: 424 DVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 483

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           + M+  GC P+ +TY  LI  +   +  DEA R+ +EM  +G  P + TYN ++     +
Sbjct: 484 QGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 543

Query: 517 GNYEMGRKVWDEMI--RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           G  +  +++   M   R  C PD  +Y  ++  L+S D   EA + LE+M
Sbjct: 544 GRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 162/324 (50%), Gaps = 17/324 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +YN +++ L R  + + +  +L EM  +G  L   T+   +  +       +A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M ++     V T   L+ ++ ++     A    D+++ R   PN  TYT L+ G
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   + EA RV  EM D GF P VV +N ++ G    GK  DAI + E MK KG SP+
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY+ ++  FC+                  +D    + +EM E+G  PD +TY++LI+ 
Sbjct: 450 VVSYSTVLSGFCRS---------------YDVDEALRVKREMVEKGIKPDTITYSSLIQG 494

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              Q+   EA  +Y+EM+R G  P   TY  ++ +Y   G+ E   ++ +EM+ +G  PD
Sbjct: 495 FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPD 554

Query: 538 DNSYTVLIGGLISQDRSGEAYKYL 561
             +Y+VLI GL  Q R+ EA + L
Sbjct: 555 VVTYSVLINGLNKQSRTREAKRLL 578



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 23/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           GF     +YN+++    R+ R      ++ +EM E  +  ++ T+ I +  F  A     
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A+ +F+ M        V T N L++   +  K+    +LL         PNL +Y V++ 
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR   + E   V  EM  +G+  D V +N +++G  K G    A+ +   M   G +P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           +V +YT +I   CK                     N   YT L+ GF  +  M+  Y +L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +EM + G  P  +TYNALI    +    ++A+ + ++M   G  P + +Y+ ++  + ++
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + +   +V  EM+ +G  PD  +Y+ LI G   Q R+ EA    EEML  G+      Y
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 173/368 (47%), Gaps = 22/368 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN ++     A   +  +++ ++M  KG L ++ T+   ++ +   ++      + 
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M     +  + + N ++  L R    KE   +  ++  R ++ +  TY  L+ G+C+ 
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE 323

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N  +A  +  EM+  G  P V+ +  ++  + K G  + A++  + M+ +G  PN R+Y
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           T ++  F ++                    +   Y  LI G     +M+    +L++M+E
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           +G  PD ++Y+ ++         DEA+R+ +EMV  G KP   TY+ +++ + +    + 
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              +++EM+R G  PD+ +YT LI     +    +A +   EM+EKG+   V+ Y+    
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN 563

Query: 582 DLSRAGRS 589
            L++  R+
Sbjct: 564 GLNKQSRT 571



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 182/418 (43%), Gaps = 55/418 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TY S++  + +A      +  L++M  +GL   E T+   ++ F+      +A
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   MN   F   V T N L+     +   ++A  + + +K +  +P++ +Y+ +L G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  ++ EA RV  EM++KG KPD + ++ +++G  +  +  +A  L+E M   G  P+
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I  +C +                    +   Y+ LI G   + R      LL 
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 458 EMEERGCPPDGLTYNALIK------------LMK---IQKMPDEAVRIYKEMVRSGFKPT 502
           ++      P  +TY+ LI+            L+K   ++ M  EA ++++ M+    KP 
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              YN+++  + + G+      ++ EM++ G      +   L+  L  + +  E    + 
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIV 699

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKN 620
            +L              + +LS A ++ VL E+  +    G  +V  VL   AE  K+
Sbjct: 700 HVLR-------------SCELSEAEQAKVLVEINHR---EGNMDV--VLDVLAEMAKD 739



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 141/312 (45%), Gaps = 33/312 (10%)

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKE-AQLLFDKLKHRFTPNLTTYTV---LLGG 357
             ++ K+K      T   L E++    L  E A L+F  L+  +    +T +V   ++  
Sbjct: 87  LHILTKFKL---YKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKS 143

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR--SDAIKLFEVMKAKGPS 415
           + R+  + +A  + +     GF P V+++N +L+  ++  KR  S A  +F+ M     S
Sbjct: 144 YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR-SKRNISFAENVFKEMLESQVS 202

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV +Y I+I  FC              GN   +D+   L  +ME +GC P+ +TYN LI
Sbjct: 203 PNVFTYNILIRGFCFA------------GN---IDVALTLFDKMETKGCLPNVVTYNTLI 247

Query: 476 ----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
               KL KI    D+  ++ + M   G +P + +YN+++    + G  +    V  EM R
Sbjct: 248 DGYCKLRKI----DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           RG   D+ +Y  LI G   +    +A     EML  G+   V+ Y      + +AG    
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 592 LDELAQKMRFSG 603
             E   +MR  G
Sbjct: 364 AMEFLDQMRVRG 375



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 148/335 (44%), Gaps = 37/335 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF+ +  TYN++++      + E  +++LE+M EKGL   + ++   ++ F  + +  +A
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           + +   M +   K    T + L++     +  KEA  L+++ L+    P+  TYT L+  
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C   +L +A ++ NEM++KG  PDVV +++++ GL K  +  +A +L   +  +   P+
Sbjct: 530 YCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589

Query: 418 ---------------VRSYTIMIWKFC--------------------KQNAAVYTCLITG 442
                           +S   +I  FC                    K +   Y  +I G
Sbjct: 590 DVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHG 649

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                 +   Y L KEM + G     +T  AL+K +  +   +E   +   ++RS     
Sbjct: 650 HCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSE 709

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                ++++   + GN ++   V  EM + G  P+
Sbjct: 710 AEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 115/268 (42%), Gaps = 37/268 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ TY+S++      R+ +    + EEM   GL   E T+   +NA+    + +KA
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTY------ 351
           + +   M +      V T + L+  L +    +EA+ L  KL +  + P+  TY      
Sbjct: 540 LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN 599

Query: 352 ---------TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
                      L+ G+C    + EA +V+  M+ K  KPD  A+NIM+ G  + G    A
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKA 659

Query: 403 -------------------IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
                              I L + +  +G    + S  + + + C+ + A    ++   
Sbjct: 660 YTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI 719

Query: 444 GNRR-RMDIVYDLLKEMEERGCPPDGLT 470
            +R   MD+V D+L EM + G  P+G++
Sbjct: 720 NHREGNMDVVLDVLAEMAKDGFLPNGIS 747


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 186/390 (47%), Gaps = 40/390 (10%)

Query: 215 VDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           V  L  F    + A  FF W   +PGF HN  +Y+SM++IL RAR        L  + EK
Sbjct: 71  VSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRAR--------LLGVAEK 122

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMN---KYKFKAGVDTINCLLENLGRSKLPK 331
             +SM      + +  + ++    + +F  MN   ++KFK  +   N +L +L +  L  
Sbjct: 123 IRISM------IKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLID 176

Query: 332 EAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           E + ++ + L ++ +PN+ T+  ++ G+C++ N++EA    ++++  G  PD   +  ++
Sbjct: 177 EMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLI 236

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAV------------ 435
            G  +     +A ++F +M  KG   N  SYT +I   C+    N A+            
Sbjct: 237 LGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCC 296

Query: 436 -----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVR 489
                YT LI       R     +L  EM+E+GC P+  TY  LI  L K  KM DEA +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKM-DEARK 355

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  EM   G  P++ TYN ++  Y + G  +   ++ D M    C P+  +Y  LI GL 
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC 415

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            + +  +A   L +MLE+ +   ++ YN  
Sbjct: 416 KKRKVHKAMALLNKMLERKLSPSLITYNSL 445



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 169/353 (47%), Gaps = 17/353 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY  ++  L +  + +    ML EM EKGL+ S+ T+   ++ +        A
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             I +LM          T N L+  L + +   +A  L +K L+ + +P+L TY  L+ G
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +L  A R+ + M + G  PD   +++ ++ L K G+  +A  LF+ +KAKG    
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG---- 504

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                       K N  +YT LI G+    ++D+ Y LL+ M    C P+  TYN LI+ 
Sbjct: 505 -----------VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEG 553

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +K   EA  +  +M+  G KPT+ TY +++    + G ++   KV++ M+  G  PD
Sbjct: 554 LCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPD 613

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
             +YT  +    SQ    E    + +M E+G+   ++ Y       +R G ++
Sbjct: 614 VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTH 666



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 169/387 (43%), Gaps = 51/387 (13%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+RTYN ++  L + R+    +++L +M E+ L  S+ T+   ++      + + A  + 
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL 462

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            LMN+        T +  ++ L +    +EA  LFD +K +    N   YT L+ G+C+V
Sbjct: 463 SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKV 522

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             +  A  +   M++    P+   +N+++EGL K  K  +A  L   M   G  P V +Y
Sbjct: 523 GKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTY 582

Query: 422 TIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           TI+I +  K  A                      YT  +  + ++  ++ V D++ +M E
Sbjct: 583 TILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNE 642

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY-------- 513
            G  PD +TY  LI       +   A    K MV +G KP+++  ++++K+         
Sbjct: 643 EGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKE 702

Query: 514 ---------------------FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
                                ++T  YE+  K++++M+  GC  D + Y  LI G   Q+
Sbjct: 703 TRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQE 762

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           R  EA   +  M E+GM      YN  
Sbjct: 763 RLEEAQGLVHHMKERGMSPSEDIYNSL 789



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 169/425 (39%), Gaps = 61/425 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQ--FETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKE 294
           + G   ++ TY S+  ILG  R    +    +   M +KG    E ++   ++    A  
Sbjct: 222 QAGLHPDTFTYTSL--ILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGR 279

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
             +A+ +F  M +      V T   L+  L  S    EA  LF+++K +   PN+ TYTV
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G C+   + EA ++ +EM +KG  P VV +N +++G  K G   DA ++ ++M++  
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
             PN R+Y  +I   CK+                    +   Y  LI G      ++  Y
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            LL  M E G  PD  TY+  I  +  +   +EA  ++  +   G K     Y  ++  Y
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSY-------------------------------- 541
            + G  ++   + + M+   C P+  +Y                                
Sbjct: 520 CKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTV 579

Query: 542 ---TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
              T+LIG ++       A K    M+  G +  V  Y  F       G    +D++  K
Sbjct: 580 VTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAK 639

Query: 599 MRFSG 603
           M   G
Sbjct: 640 MNEEG 644



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 157/344 (45%), Gaps = 16/344 (4%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           NS TYN ++  L + ++ +   S++ +M   G+  ++ T+ I +           A+ +F
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVF 602

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M    ++  V T    L       + +E   +  K+      P+L TYTVL+ G+ R+
Sbjct: 603 NHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL----------KIGKRS----DAIKLFE 407
                A      M+D G KP +   +I+++ L           +IG  S    +++ + +
Sbjct: 663 GLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIAD 722

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
           V K       ++ +  M+   C  + ++Y  LI GF  + R++    L+  M+ERG  P 
Sbjct: 723 VWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPS 782

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
              YN+L+       +  EAVR+   MV +G  P + +Y +++   +  G+ E  + V+ 
Sbjct: 783 EDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFH 842

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            ++  G   D+ ++ VLI GL+ +D   E  + ++ M EK   A
Sbjct: 843 GLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATA 886



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 150/392 (38%), Gaps = 52/392 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM- 286
           A+R      +  G   +  TY+  +  L +  + E   ++ + +  KG+ + E    A+ 
Sbjct: 458 AYRLLSLMNEN-GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFT 345
           + +    +   A ++ E M          T N L+E L + K  KEA  L  K L     
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK 576

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P + TYT+L+G   +      A +V+N M+  G++PDV  +   L      G   +   +
Sbjct: 577 PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDV 636

Query: 406 FEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGN 445
              M  +G  P++ +YT++I  +                    CK +  + + LI    +
Sbjct: 637 IAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSH 696

Query: 446 RRRM-----------------------------DIVYDLLKEMEERGCPPDGLTYNALIK 476
             RM                             +I   L ++M E GC  D   Y ALI 
Sbjct: 697 ENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIA 756

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               Q+  +EA  +   M   G  P+   YN ++    + G Y    ++ D M+  G  P
Sbjct: 757 GFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP 816

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
              SY +L+ GL  +  + +A      +L  G
Sbjct: 817 LLESYKLLVCGLYIEGSNEKAKAVFHGLLSCG 848



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 22/249 (8%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKG---FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           ++   C +++++    V+ +M   G   FKP +  +N +L  L K     +   ++  + 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
               SPN+ ++  M+  +CK             GN    ++      ++ + G  PD  T
Sbjct: 187 NNQISPNIYTFNAMVNGYCK------------IGNVVEAELYAS---KIVQAGLHPDTFT 231

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y +LI      K  D A  ++  M + G +    +Y  ++    + G      K++ +M 
Sbjct: 232 YTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMT 291

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
              CCP   +YTVLI  L    R  EA     EM EKG +  V  Y      L +  +  
Sbjct: 292 EDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK-- 349

Query: 591 VLDELAQKM 599
            +DE A+KM
Sbjct: 350 -MDE-ARKM 356



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 111/280 (39%), Gaps = 37/280 (13%)

Query: 330 PKEAQLLFD--KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           P+ A   F+   L+  F  N+ +Y+ +L    R + L  A ++   MI            
Sbjct: 81  PQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCS------- 133

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
             +E +L +      +++F  M A G     P +R Y  ++    K            F 
Sbjct: 134 --IEDVLFV------LEVFRKMNADGEFKFKPTLRCYNTILMSLSK------------FL 173

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               M  VY    E+      P+  T+NA++    KI  +  EA     ++V++G  P  
Sbjct: 174 LIDEMKTVY---LELLNNQISPNIYTFNAMVNGYCKIGNVV-EAELYASKIVQAGLHPDT 229

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY  ++  + +    +   +V+  M ++GC  ++ SYT LI GL    R  EA K   +
Sbjct: 230 FTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFAD 289

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M E      V  Y      LS +GR      L  +M+  G
Sbjct: 290 MTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 193/414 (46%), Gaps = 28/414 (6%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           ME  L++    LS  +V DV+   R  RRP   FRFF W   +  F  +  T+N ++ +L
Sbjct: 51  MEDALEKLAPFLSSEIVNDVM---REQRRPELGFRFFIWTTRRRSF-RSWVTHNLVIDML 106

Query: 256 GRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
            +   F+T   +LEE+    + +   TF + + A+A +   +KAV  F  M  +  K  V
Sbjct: 107 AKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDV 166

Query: 315 DTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +L  + + ++   A  ++++ LK  + PN  T+ +LL G C+     +A ++++E
Sbjct: 167 FTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDE 226

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--- 430
           M  KG  P+ + + I+L GL +  +  D  +L   MK  G  P+  +   ++  FCK   
Sbjct: 227 MTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQ 286

Query: 431 --QNAAV---------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             +  A+               Y+ LI G    +R D V +  ++M + G  PD + Y  
Sbjct: 287 IDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTI 346

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI+      M D A+ +  +M + G  P  + YN ++K +   G  +  R +  E+ +  
Sbjct: 347 LIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKND 406

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           C P   +YT+LI G+       EA +   +M   G    ++ +N     L +AG
Sbjct: 407 CFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAG 460



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 142/324 (43%), Gaps = 30/324 (9%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K G+    + Y+S++  L RA++++ +     +M + G+   +  + I +  F      
Sbjct: 298 EKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMV 357

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVL 354
             A+ +   M +          N L++      L  +A+ L  +  K+   P   TYT+L
Sbjct: 358 DYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTIL 417

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKG 413
           + G CR   L EA +++N+M + G  P ++  N +++GL K G+  +A  LF  M+  K 
Sbjct: 418 ICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKN 477

Query: 414 PSPNVR------------SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           PS  +R            S   M+ + C+    +                 Y LL ++ +
Sbjct: 478 PSLFLRLSQGADRVMDTASLQTMVERLCESGLILKA---------------YKLLMQLAD 522

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD +TYN LI      K  + A ++++E+   G  P   TY  ++  + +    E 
Sbjct: 523 SGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREED 582

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLI 545
             +V D+M++ GC P    Y  L+
Sbjct: 583 AFRVLDQMVKNGCTPSSAVYKCLM 606



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 75/154 (48%)

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  + +L+E++         T++ LI       M ++AV  + +M   G KP + TYN I
Sbjct: 113 DTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSI 172

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    Q   + +   V+++M++    P+  ++ +L+ GL    ++ +A K  +EM +KG+
Sbjct: 173 LHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGI 232

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               + Y    + L +A R+  +  L   M+ SG
Sbjct: 233 PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSG 266



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 70/320 (21%)

Query: 254 ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK---- 309
           +L  ARQ   + + +E +G     S+ TF   ++    A E ++A  +F  M   K    
Sbjct: 426 LLDEARQ---IFNQMENLGCSP--SIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSL 480

Query: 310 ---FKAGVD------TINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWC 359
                 G D      ++  ++E L  S L  +A +LL         P++ TY VL+ G+C
Sbjct: 481 FLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFC 540

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           + KN+  A +++ E+  KG  PD V +  +++G  ++ +  DA ++ + M   G +P   
Sbjct: 541 KAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTP--- 597

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       ++AVY CL+T    + ++ + + L             L Y     L  
Sbjct: 598 ------------SSAVYKCLMTWSCRKGKLSVAFSL------------WLKY-----LRS 628

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           +    DE +++ +E    G          +++  F+  N+E+                  
Sbjct: 629 LPSQEDETLKLAEEHFEKG--ELEKAVRCLLEMNFKLNNFEIA----------------- 669

Query: 540 SYTVLIGGLISQDRSGEAYK 559
            YT+ + GL    RS EA K
Sbjct: 670 PYTIWLIGLCQARRSEEALK 689



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 51/263 (19%)

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           V HN++++ L K        K+ E +K         +++++I  + K   A     +  F
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKA--VESF 154

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G             +M++ GC PD  TYN+++ +M  +++   A+ +Y +M++  + P  
Sbjct: 155 G-------------KMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNR 201

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRR------------------------------- 532
            T+ +++    + G  +   K++DEM ++                               
Sbjct: 202 ATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNT 261

Query: 533 ----GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
               GCCPD  +   L+ G     +  EA+  L+   ++G    +  Y+     L RA R
Sbjct: 262 MKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKR 321

Query: 589 SYVLDELAQKMRFSGKFEVSNVL 611
              + E  +KM F    E   VL
Sbjct: 322 YDEVQEWCRKM-FKAGIEPDVVL 343


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 186/390 (47%), Gaps = 40/390 (10%)

Query: 215 VDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           V  L  F    + A  FF W   +PGF HN  +Y+SM++IL RAR        L  + EK
Sbjct: 71  VSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRAR--------LLGVAEK 122

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMN---KYKFKAGVDTINCLLENLGRSKLPK 331
             +SM      + +  + ++    + +F  MN   ++KFK  +   N +L +L +  L  
Sbjct: 123 IRISM------IKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLID 176

Query: 332 EAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           E + ++ + L ++ +PN+ T+  ++ G+C++ N++EA    ++++  G  PD   +  ++
Sbjct: 177 EMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLI 236

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAV------------ 435
            G  +     +A ++F +M  KG   N  SYT +I   C+    N A+            
Sbjct: 237 LGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCC 296

Query: 436 -----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVR 489
                YT LI       R     +L  EM+E+GC P+  TY  LI  L K  KM DEA +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKM-DEARK 355

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  EM   G  P++ TYN ++  Y + G  +   ++ D M    C P+  +Y  LI GL 
Sbjct: 356 MLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC 415

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            + +  +A   L +MLE+ +   ++ YN  
Sbjct: 416 KKRKVHKAMALLNKMLERKLSPSLITYNSL 445



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 169/353 (47%), Gaps = 17/353 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY  ++  L +  + +    ML EM EKGL+ S+ T+   ++ +        A
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             I +LM          T N L+  L + +   +A  L +K L+ + +P+L TY  L+ G
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +L  A R+ + M + G  PD   +++ ++ L K G+  +A  LF+ +KAKG    
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG---- 504

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                       K N  +YT LI G+    ++D+ Y LL+ M    C P+  TYN LI+ 
Sbjct: 505 -----------VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEG 553

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +K   EA  +  +M+  G KPT+ TY +++    + G ++   KV++ M+  G  PD
Sbjct: 554 LCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPD 613

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
             +YT  +    SQ    E    + +M E+G+   ++ Y       +R G ++
Sbjct: 614 VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTH 666



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 158/348 (45%), Gaps = 5/348 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           NS TYN ++  L + ++ +   S++ +M   G+  ++ T+ I +           A+ +F
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVF 602

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M    ++  V T    L       + +E   +  K+      P+L TYTVL+ G+ R+
Sbjct: 603 NHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL---KIGKRSDAIKLFEVMKAKGPSPNV 418
                A      M+D G KP +   +I+++ L    ++ +    I +  V         +
Sbjct: 663 GLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIAL 722

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
           + +  M+   C  + ++Y  LI GF  + R++    L+  M+ERG  P    YN+L+   
Sbjct: 723 KLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCC 782

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
               +  EAVR+   MV +G  P + +Y +++   +  G+ E  + V+  ++  G   D+
Sbjct: 783 CKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDE 842

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            ++ VLI GL+ +D   E  + ++ M EKG +   L Y+     L R 
Sbjct: 843 VAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLERT 890



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 22/249 (8%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKG---FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           ++   C +++++    V+ +M   G   FKP +  +N +L  L K     +   ++  + 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
               SPN+ ++  M+  +CK             GN    ++      ++ + G  PD  T
Sbjct: 187 NNQISPNIYTFNAMVNGYCK------------IGNVVEAELYAS---KIVQAGLHPDTFT 231

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y +LI      K  D A  ++  M + G +    +Y  ++    + G      K++ +M 
Sbjct: 232 YTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMT 291

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
              CCP   +YTVLI  L    R  EA     EM EKG +  V  Y      L +  +  
Sbjct: 292 EDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK-- 349

Query: 591 VLDELAQKM 599
            +DE A+KM
Sbjct: 350 -MDE-ARKM 356



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 40/316 (12%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SM 279
           F HA +  F      G +P       TY + +         E +  ++ +M E+G+L  +
Sbjct: 595 FDHALK-VFNHMVSLGYQPDVC----TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDL 649

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE------- 332
            T+ + ++ +A      +A    + M     K  +  ++ L++NL      KE       
Sbjct: 650 VTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGI 709

Query: 333 -----------AQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
                      A  LF+K+ +H  T +++ Y  L+ G+C+ + L EA  + + M ++G  
Sbjct: 710 DSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMS 769

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P    +N +L+   K+G  ++A++L + M   G  P + SY +++         +Y   I
Sbjct: 770 PSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLV-------CGLY---I 819

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G  N +   + + LL      G   D + +  LI  +  + + DE   +   M   G +
Sbjct: 820 EG-SNEKAKAVFHGLLS----CGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQ 874

Query: 501 PTIHTYNMIMKSYFQT 516
           P   TY+++++   +T
Sbjct: 875 PNPLTYSLLIEGLERT 890



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 111/280 (39%), Gaps = 37/280 (13%)

Query: 330 PKEAQLLFD--KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           P+ A   F+   L+  F  N+ +Y+ +L    R + L  A ++   MI            
Sbjct: 81  PQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCS------- 133

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
             +E +L +      +++F  M A G     P +R Y  ++    K            F 
Sbjct: 134 --IEDVLFV------LEVFRKMNADGEFKFKPTLRCYNTILMSLSK------------FL 173

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               M  VY    E+      P+  T+NA++    KI  +  EA     ++V++G  P  
Sbjct: 174 LIDEMKTVY---LELLNNQISPNIYTFNAMVNGYCKIGNVV-EAELYASKIVQAGLHPDT 229

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY  ++  + +    +   +V+  M ++GC  ++ SYT LI GL    R  EA K   +
Sbjct: 230 FTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFAD 289

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M E      V  Y      LS +GR      L  +M+  G
Sbjct: 290 MTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 175/387 (45%), Gaps = 23/387 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+N ++  L RA Q    + MLE+M   GL+  E TF   M  +    +   A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLG 356
           + I E M ++       ++N ++    +    ++A     ++ ++  F P+  T+  L+ 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+  ++  A  + + M+ +G+ PDV  +N ++ GL K+G+  +A++  + M  +  SP
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSP 363

Query: 417 NVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLL 456
           N  +Y  +I   CK+N                       +  LI G    R   +  +L 
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +EM  +GC PD  TYN LI  +  +   DEA+ + K+M  SG   ++ TYN ++  + + 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                  +++DEM   G   +  +Y  LI GL    R  +A + +++M+ +G K     Y
Sbjct: 484 NKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTY 543

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           N       R G      ++ Q M  +G
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNG 570



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 185/435 (42%), Gaps = 59/435 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           A R F  A  KP F+     Y  ++  LGR+  F+ M  +LE+M   G  +    F I +
Sbjct: 66  ALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILI 125

Query: 287 NAFAAAKERKKAVAI-------FEL-----------------------------MNKYKF 310
            ++A  + + + + +       F L                             M+ +  
Sbjct: 126 ESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGI 185

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           K  V T N L++ L R+   + A L+ + +  +   P+  T+T ++ G+    +L  A R
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR 245

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVRSYTIMIWKF 428
           +  +M++ G     V+ N+++ G  K G+  DA+   + M  + G  P+  ++  ++   
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305

Query: 429 CKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           CK                     +   Y  +I+G      +    + L +M  R C P+ 
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNT 365

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN LI  +  +   +EA  + + +   G  P + T+N +++    T N+ +  ++++E
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE 425

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M  +GC PD+ +Y +LI  L S+ +  EA   L++M   G    V+ YN       +A +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

Query: 589 SYVLDELAQKMRFSG 603
               +E+  +M   G
Sbjct: 486 IREAEEIFDEMEVHG 500



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 141/326 (43%), Gaps = 21/326 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           TF   +N    A   K A+ I ++M +  +   V T N ++  L +    KEA    D++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R  +PN  TY  L+   C+   + EA  +   +  KG  PDV   N +++GL      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A++LFE M++KG  P+  +Y ++I   C +                    +   Y  L
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I GF    ++    ++  EME  G   + +TYN LI  +   +  ++A ++  +M+  G 
Sbjct: 477 IDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQ 536

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TYN ++  + + G+ +    +   M   GC PD  +Y  LI GL    R   A K
Sbjct: 537 KPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSR 585
            L  +  KG+      YN     L R
Sbjct: 597 LLRSIQMKGIALTPHAYNPVIQGLFR 622



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 166/375 (44%), Gaps = 24/375 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TYN+++S L +  Q E    +   +  KG+L  + TF   +      +  + A+ +F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 303 ELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           E M     +    T N L+++L  + KL +   +L          ++ TY  L+ G+C+ 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA  +++EM   G   + V +N +++GL K  +  DA +L + M  +G  P+  +Y
Sbjct: 484 NKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTY 543

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             ++  FC+           G   ++  DIV    + M   GC PD +TY  LI  +   
Sbjct: 544 NSLLTHFCR-----------GGDIKKAADIV----QAMTSNGCEPDIVTYGTLISGLCKA 588

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNS 540
              + A ++ + +   G   T H YN +++  F+         ++ EM+ +    PD  S
Sbjct: 589 GRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVS 648

Query: 541 YTVLIGGLISQDRS-GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA--- 596
           Y ++  GL +      EA  +L E+LEKG           A  L        L +L    
Sbjct: 649 YRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMV 708

Query: 597 -QKMRFSGKFEVSNV 610
            QK RFS + EVS V
Sbjct: 709 MQKARFSEE-EVSMV 722


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 22/368 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G   +  TY SM+ +L +A + +  V + E++ + + +     +   +  + +A +  +A
Sbjct: 295 GLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEA 354

Query: 299 VAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
              + L+ + K K  + ++   NC+L  LG+ +  +EA  +F+++K    PN+ TY +L+
Sbjct: 355 ---YGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILI 411

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR   L  A  + ++M   G  P+V+  NIM++ L K  K  +A  +FE M  K   
Sbjct: 412 DMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK--- 468

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C  NA  ++ LI G G   R+D  Y L ++M + G  P  + Y +LI
Sbjct: 469 ------------VCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 516

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           +        ++  +IYKEMV +G  P +   N  M   F+ G  E GR ++ E+   G  
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 576

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PD  SY++LI GL+    + E Y+    M E+G       YN       ++G+     +L
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636

Query: 596 AQKMRFSG 603
            ++M+  G
Sbjct: 637 LEEMKVKG 644



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 198/450 (44%), Gaps = 30/450 (6%)

Query: 178 PREIERVCKVIDELFSL------DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRF 231
           PR  E + K +D++  +         +E  L   G      LV+ VL+R + A   A  +
Sbjct: 53  PRNNEGIRKGVDDVCCILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKDANT-AVNY 111

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA-FA 290
           F WA  +    H    YNS++ ++ R  +F+ +  +LEEM   G        I + A   
Sbjct: 112 FQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCV 171

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
            +++ ++A  I + M K+KF+        L+  L   + P    +LF +++   +  N+ 
Sbjct: 172 KSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVH 231

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            +T L+  + R   +  A  + +EM       D+V +N+ ++   K GK   + K F  M
Sbjct: 232 LFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEM 291

Query: 410 KAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM 449
           K+ G  P+  +YT MI   CK N                    A  Y  +I G+G+  + 
Sbjct: 292 KSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKF 351

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  Y LL+  + +G  P  + YN ++  +  ++  +EA+RI++EM R    P + TYN++
Sbjct: 352 DEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNIL 410

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    + G      ++ D+M R G  P+  +  ++I  L    +  EA    E M +K  
Sbjct: 411 IDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVC 470

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
               + ++     L + GR      L +KM
Sbjct: 471 TPNAVTFSSLIDGLGKCGRVDDAYSLYEKM 500



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 168/383 (43%), Gaps = 59/383 (15%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ T++S++  LG+  + +   S+ E+M + G +     +   + +F     ++    I+
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIY 532

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRV 361
           + M        +  IN  ++ + ++   ++ + LF ++  H F P+  +Y++L+ G  + 
Sbjct: 533 KEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 592

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               E   ++  M ++G   D  A+N +++G  K GK + A +L E MK KG  P V +Y
Sbjct: 593 GLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTY 652

Query: 422 TIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I    K                     N  VY+ LI GFG   R+D  Y +++E+ +
Sbjct: 653 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 712

Query: 462 RG-----------------------------------CPPDGLTYNALIK-LMKIQKMPD 485
           +G                                   CPP+ +TY+ LI  L +++K  +
Sbjct: 713 KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKF-N 771

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A   ++EM + G KP   TY  ++    + GN      ++      G  PD  SY  +I
Sbjct: 772 KAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMI 831

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
            GL S +++ +AY   EE   KG
Sbjct: 832 EGLSSANKAMDAYALFEETRLKG 854



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N   Y+S++   G+  + +    ++EE+ +KGL  ++ T+   ++A   A+E  +A
Sbjct: 679 GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 738

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           +  F+ M   K      T + L+  L R +   +A + + ++ K    PN  TYT ++ G
Sbjct: 739 LICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISG 798

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +  N++EA  +++     G  PD  ++N M+EGL    K  DA  LFE  + KG + +
Sbjct: 799 LAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIH 858

Query: 418 VRSYTIMIWKF----CKQNAAV 435
            ++  +++       C + AA+
Sbjct: 859 TKTCVVLLDALHKAECLEQAAI 880


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 183/410 (44%), Gaps = 52/410 (12%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           FF W+    GF  +   YN M+ + G+ RQF+    +++ M  +G+ +++ TF   +  +
Sbjct: 164 FFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRY 223

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
             A    +AV  F  M  Y     +   + ++ +L + +   EAQ  FD LKHRF P++ 
Sbjct: 224 VRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVV 283

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            YT L+ GWCR  ++ +A  V+++M   G KP+V  ++I+++ L + G+ + A  +F  M
Sbjct: 284 VYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEM 343

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              G               C  NA  +  L+       R + V  +  +M+  GCP D +
Sbjct: 344 IDAG---------------CDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTI 388

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-------------IH------------ 504
           +YN +I+     +  +EA +I   MV+ G  P              +H            
Sbjct: 389 SYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARM 448

Query: 505 ----------TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
                     TYN++M+ + ++ + +M  K+  EM      P+ N+Y +LI         
Sbjct: 449 KELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHW 508

Query: 555 GEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKMRFSG 603
             AYK + EM+E+    P L  Y      L +AG+    +EL  KM   G
Sbjct: 509 NNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVARG 558


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 26/354 (7%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+ ++   ++ +LE  G   +  + T+ + +  +  + E  KA+ + E M+       V 
Sbjct: 155 GKTKKATRIMEILENSG--AVPDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVV 209

Query: 316 TINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N +L +L  S   KEA  + D+ L+    P++ TYT+L+   C    + +A ++ +EM
Sbjct: 210 TYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 269

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI----------- 423
             KG KPDVV +N+++ G+ K G+  +AIK    M + G  PNV ++ I           
Sbjct: 270 RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRW 329

Query: 424 ---------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                    M+ K C  +   +  LI     +R +    D+L++M + GC P+ L+YN L
Sbjct: 330 MDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPL 389

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +     +K  D A+   + MV  G  P I TYN ++ +  + G  +   ++ +++  +GC
Sbjct: 390 LHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGC 449

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P   +Y  +I GL    ++  A + LEEM  KG+K  ++ Y+     L R G+
Sbjct: 450 SPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGK 503



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 182/402 (45%), Gaps = 36/402 (8%)

Query: 229 FRFFCWAG------------DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
            R FC +G            +  G   +  TYN ++    ++ + +  + +LE M     
Sbjct: 148 IRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAP- 206

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             + T+   + +   + + K+A+ + +   + +    V T   L+E         +A  L
Sbjct: 207 -DVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKL 265

Query: 337 FDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            D+++ +   P++ TY VL+ G C+   L EA +  N M   G KP+V+ HNI+L  +  
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCS 325

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAV 435
            G+  DA +L   M  KG SP+V ++ I+I   C++                    N+  
Sbjct: 326 TGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLS 385

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  L+ GF   ++MD   + L+ M  RGC PD +TYN L+  +      D AV I  ++ 
Sbjct: 386 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + TYN ++    + G  E   ++ +EM R+G  PD  +Y+ L+ GL  + +  
Sbjct: 446 SKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVD 505

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELA 596
           EA K   +M    +K   + YN     L +A + S  +D LA
Sbjct: 506 EAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 547



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 22/304 (7%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L+EM +KG    + T+ + +N         +A+     M  Y  K  V T N +L ++ 
Sbjct: 265 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMC 324

Query: 326 RSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +    +A+ LL D L+   +P++ T+ +L+   CR + L  A  V  +M   G  P+ +
Sbjct: 325 STGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSL 384

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAV------ 435
           ++N +L G  +  K   AI+  E+M ++G  P++ +Y  ++   CK    +AAV      
Sbjct: 385 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQL 444

Query: 436 -----------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  +I G     + +   +LL+EM  +G  PD +TY+ L++ +  +   
Sbjct: 445 SSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKV 504

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           DEA++I+ +M     KP+  TYN IM    +             M+ +GC P + +YT+L
Sbjct: 505 DEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTIL 564

Query: 545 IGGL 548
           I G+
Sbjct: 565 IEGI 568



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 23/254 (9%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++   T L+ G+CR     +A R+   + + G  PDV+ +N+++ G  K G+   A+++
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEV 198

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
            E M     +P+V +Y  ++   C                      +   YT LI    N
Sbjct: 199 LERMSV---APDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCN 255

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +     LL EM ++GC PD +TYN LI  +  +   DEA++    M   G KP + T
Sbjct: 256 DSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVIT 315

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +N+I++S   TG +    ++  +M+R+GC P   ++ +LI  L  +   G A   LE+M 
Sbjct: 316 HNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP 375

Query: 566 EKGMKAPVLDYNKF 579
           + G     L YN  
Sbjct: 376 KHGCVPNSLSYNPL 389



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 22/296 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +  TYN +++ + +  + +  +  L  M   G   ++ T  I + +  +     
Sbjct: 271 KKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWM 330

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
            A  +   M +      V T N L+  L R +L   A  + +K+ KH   PN  +Y  LL
Sbjct: 331 DAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLL 390

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+ K +  A      M+ +G  PD+V +N +L  L K GK   A+++   + +KG S
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCS 450

Query: 416 PNVRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           P + +Y  +I                     K  K +   Y+ L+ G G   ++D    +
Sbjct: 451 PVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKI 510

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             +ME     P  +TYNA++  +   +    A+     MV  G KPT  TY ++++
Sbjct: 511 FHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           A NI L  L++ G+  + +K  E M  +G  P+V + T +I  FC+             G
Sbjct: 108 ASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRS------------G 155

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             ++   + ++L   E  G  PD +TYN LI         D+A+ + + M      P + 
Sbjct: 156 KTKKATRIMEIL---ENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVV 209

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN I++S   +G  +   +V D  ++R C PD  +YT+LI    +    G+A K L+EM
Sbjct: 210 TYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 269

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            +KG K  V+ YN     + + GR   LDE
Sbjct: 270 RKKGCKPDVVTYNVLINGICKEGR---LDE 296


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 164/328 (50%), Gaps = 17/328 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  +YN +++ L R    +    +LEEMG KG    E T+   +N +       +A
Sbjct: 75  GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 134

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I   M +      V T   L+ ++ +++    A   FD+++ R   PN  TYT L+ G
Sbjct: 135 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   L EA R+ NEM + GF P VV +N  + G   + +  +A+ + + M  KG +P+
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY+ +I  FC++                 +D  + + +EM E+G  PD +TY++LI+ 
Sbjct: 255 VVSYSTIISGFCRKG---------------ELDRAFQMKQEMVEKGVSPDAVTYSSLIQG 299

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   +   EA  + +EM+  G  P   TY  ++ +Y   G+      + DEMI +G  PD
Sbjct: 300 LCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 359

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +Y+VLI GL  Q R+ EA + L +++
Sbjct: 360 AVTYSVLINGLNKQARTREAKRLLFKLI 387



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 29/345 (8%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+ I +  F +  E +K +  F  M +      V T N L++   +     EA  L   +
Sbjct: 12  TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 71

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             +   PNL +Y V++ G CR  ++ EA  +  EM  KGF PD V +N +L G  K G  
Sbjct: 72  SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A+ +   M   G SP+V +YT +I   CK                     N   YT L
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I GF  +  ++  Y +L EM E G  P  +TYNA I    + +  +EA+ + +EMV  G 
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + +Y+ I+  + + G  +   ++  EM+ +G  PD  +Y+ LI GL    R  EA  
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 560 YLEEMLEKGMKAPVLDYNKF------AADLSRAGRSYVLDELAQK 598
             +EML+ G+      Y           DL++A   ++ DE+  K
Sbjct: 312 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKA--LHLHDEMIHK 354



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 15/240 (6%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           ++ R +PN+ TY +L+ G+C V  L +    + EM   G  P+VV +N +++   K+G+ 
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 61

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A  L + M +KG  PN+ SY ++I   C++ +               M   +++L+EM
Sbjct: 62  DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGS---------------MKEAWEILEEM 106

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             +G  PD +TYN L+     +    +A+ I+ EMVR+G  P++ TY  ++ S  +  N 
Sbjct: 107 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 166

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               + +D+M  RG  P++ +YT LI G   Q    EAY+ L EM E G    V+ YN F
Sbjct: 167 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 226



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 194/459 (42%), Gaps = 77/459 (16%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           I+  CK+  IDE F L ++M +   +  + +S+N++++ L R   + + A+      G K
Sbjct: 52  IDAYCKMGRIDEAFGLLKSMSSKGMQPNL-ISYNVIINGLCR-EGSMKEAWEILEEMGYK 109

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
            GF  +  TYN++++   +   F   + +  EM   G+  S+ T+   +N+   A+   +
Sbjct: 110 -GFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 168

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A+  F+ M     +    T   L++   R  L  EA  + +++    F+P++ TY   + 
Sbjct: 169 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 228

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C ++ + EA  V  EM++KG  PDVV+++ ++ G  + G+   A ++ + M  KG SP
Sbjct: 229 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 288

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           +  +Y+ +I   C+                     +   YT LI  +     ++    L 
Sbjct: 289 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 348

Query: 457 KEMEERGCPPDGLTYNALI-----------------KLMKIQKMPD-------------- 485
            EM  +G  PD +TY+ LI                 KL+  + +P               
Sbjct: 349 DEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNI 408

Query: 486 -------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
                              EA R+++ MV    KP    YN+I+  + + GN      ++
Sbjct: 409 EFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLY 468

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            EMI  G  P   +   LI  L  +  + E  + + + L
Sbjct: 469 KEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 507



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 5/298 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF+ +  TYN+ +       + E  + +++EM EKGL   + ++   ++ F    E  +A
Sbjct: 215 GFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRA 274

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M +        T + L++ L    +L +   L  + L     P+  TYT L+  
Sbjct: 275 FQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 334

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C   +L +A  + +EMI KGF PD V +++++ GL K  +  +A +L   +  +   P+
Sbjct: 335 YCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS 394

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  +I             LI GF  +  M     + + M ER   P    YN +I  
Sbjct: 395 DVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHG 454

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGC 534
                   +A  +YKEM+ SGF P   T   ++K+ F+ G N EM   + D +  R C
Sbjct: 455 HCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL--RSC 510


>gi|147789025|emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera]
          Length = 515

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 206/460 (44%), Gaps = 30/460 (6%)

Query: 171 SYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGIN--LSHNLVVDVLERFRHARR-- 226
           S+ S     EI+RV ++I++    D  + + L +      LS+  V +VL R   A    
Sbjct: 33  SHPSLEIKSEIDRVTRIINDHPFPDHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHSNG 92

Query: 227 -PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFK 283
             AF FF ++     F  +S  +   + IL R R F+    ++EE+ +    LL++++  
Sbjct: 93  FKAFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMS 152

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           I ++  A  +  +  +  F  M K  F   + G +  N LL      +  KEA+ +F K+
Sbjct: 153 IMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFHKM 212

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
             RF+PN  T  +LL G+    ++      ++EMI +GFKP+ V +NI ++   K G   
Sbjct: 213 HSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNSVTYNIRIDAYCKKGCFG 272

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIW--------------------KFCKQNAAVYTCLI 440
           D ++L E M+     P + + T +I                     +  + +  VY   +
Sbjct: 273 DGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIRNLQPDIGVYNAFM 332

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +     R +     L+ EMEE G   D +TY+ + + +      +    +Y +M+R  F 
Sbjct: 333 SSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFV 392

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   T  M+MK + Q    ++   +W  +I RG CP  ++  +L+ GL S  +  EA + 
Sbjct: 393 PKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVEC 452

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            ++ LE+G       +      L  AG   +L +L Q ++
Sbjct: 453 AKQTLERGRPMSEGVFRMLERYLVEAGEGEMLWKLDQMIK 492


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 143/289 (49%), Gaps = 20/289 (6%)

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           +L +  K    PN  T++ LL G      +++A ++++EM+  G++PDV+ ++ ++ GL 
Sbjct: 34  VLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLC 93

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           K+G  + AI+L + M+ KG  PNV  Y+ +I   CK                     N  
Sbjct: 94  KMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVV 153

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y+ ++ GF N  R +    L K+M ER   PD +T+N L+  +  + M  EA  +++ M
Sbjct: 154 TYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETM 213

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +  G +P ++TYN +M  Y      +  +K+++ M+R+GC P   SY +LI G     R 
Sbjct: 214 IEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRI 273

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EA   L EM  K +    + Y+       + GR     +L ++MR  G
Sbjct: 274 DEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYG 322



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 184/408 (45%), Gaps = 25/408 (6%)

Query: 221 FRHARRPAFRF-FCWAGD--KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL- 276
           F H+    F F F   G+  K G   N  T++++++ L    +    V + +EM + G  
Sbjct: 20  FCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYE 79

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             + T+   +N          A+ + + M +   K  V   + ++++L + KL  EA   
Sbjct: 80  PDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEF 139

Query: 337 FDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
             ++ +R  +PN+ TY+ +L G+C +    EA  ++ +M+++   PD V  NI+++GL K
Sbjct: 140 LSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSK 199

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------IMIWKFCKQNAAV 435
            G   +A  +FE M  KG  PNV +Y                     IM+ K C  +   
Sbjct: 200 EGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRS 259

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  LI G     R+D    LL EM  +   PD +TY+ L+K       P +A ++ +EM 
Sbjct: 260 YNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMR 319

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + TY++++    + G+ +   ++   M      P+   YT+LI G+ +  +  
Sbjct: 320 SYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLE 379

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            A +    +  KG++  V+ Y    + L + G S    EL + M   G
Sbjct: 380 AARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG 427



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 169/357 (47%), Gaps = 22/357 (6%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   N   Y++++  L + +     +  L EM  +G+  ++ T+   ++ F      
Sbjct: 109 EEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRS 168

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A ++F+ M +        T N L++ L +  +  EAQ +F+ +  +   PN+ TY  L
Sbjct: 169 NEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNAL 228

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C    + EA +++N M+ KG  P V ++NI+++G  K G+  +A  L   M  K  
Sbjct: 229 MDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 415 SPNVRSYTIMIWKFCK----QNAA----------------VYTCLITGFGNRRRMDIVYD 454
           +P+  +Y+ ++  FC+    Q+A                  Y+ ++ G   +  +D  ++
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LLK M+E    P+   Y  LI+ M      + A  ++  +   G +P + TY +++    
Sbjct: 349 LLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLL 408

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           + G      +++ +M   GC P+  +Y V+I G +    +  A + +EEM+ +G  A
Sbjct: 409 KGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSA 465



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 163/330 (49%), Gaps = 28/330 (8%)

Query: 240 GFAHNSRTYNSMM---SILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           G + N  TY+S++     LGR+ +     S+ ++M E+ ++    TF I ++  +     
Sbjct: 147 GISPNVVTYSSILHGFCNLGRSNE---ATSLFKQMVERNVMPDTVTFNILVDGLSKEGMI 203

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A  +FE M +   +  V+T N L++         EAQ LF+ +  +   P++ +Y +L
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+   + EA  +  EM  K   PD V ++ +++G  + G+  DA KL E M++ G 
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P++ +Y+I++   CKQ                    N  +YT LI G  N  +++   +
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARE 383

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L   +  +G  PD +TY  +I  +    + +EA  ++++M   G  P   TYN+I++ + 
Sbjct: 384 LFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFL 443

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           + G+     ++ +EM+ RG   D +++ +L
Sbjct: 444 RNGDTSNAGRLIEEMVGRGFSADSSTFQML 473


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 190/435 (43%), Gaps = 62/435 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G    + T+N++++ L    + +  V +  EM  +G   ++ ++   +N         
Sbjct: 151 KLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTS 210

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLL 355
            AV +F+ M +   K  V T N ++++L + +L  +A + L + L     PN+ TY  ++
Sbjct: 211 MAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMV 270

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C +  L EA R++ EM+ +   PD V   I+++GL K G  S+A  +FE M  KG  
Sbjct: 271 HGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVE 330

Query: 416 PNVRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           PN+ +Y                     IMI + C      Y  LI GF   RRMD    L
Sbjct: 331 PNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSL 390

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY-- 513
           L EM  +   PD +TY+ L++ +     P EA+ I+KEM   G  P + TY++++  +  
Sbjct: 391 LAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCK 450

Query: 514 ---------------------------------FQTGNYEMGRKVWDEMIRRGCCPDDNS 540
                                            F  G  E+ ++++ ++   G  P   +
Sbjct: 451 HGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRT 510

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN----KFAADLSRAGRSYVLDELA 596
           YTV+I GL+ +  S EAY    +M + G       YN     F  +   +    ++DE+ 
Sbjct: 511 YTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 570

Query: 597 QKMRFSGKFEVSNVL 611
            K RFS       +L
Sbjct: 571 GK-RFSANLSTFQML 584



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 21/332 (6%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL 336
           S+  F   + +FA  K+    V++   M+ +     V ++N L+  L R + +     +L
Sbjct: 87  SVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSIL 146

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               K    P  +T+  L+ G C    + EA  ++NEM+ +G +P+V+++N ++ GL K 
Sbjct: 147 GKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKT 206

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           G  S A+ +F+ M+  G  P+V +Y  +I   CK                     N   Y
Sbjct: 207 GNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTY 266

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
            C++ GF    +++    L KEM  R   PD +T   L+  +  + M  EA  +++ M  
Sbjct: 267 NCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTE 326

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P I TYN +M  Y         +KV++ MIR+GC P  +SY +LI G     R  E
Sbjct: 327 KGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDE 386

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           A   L EM  K +    + Y+     L + GR
Sbjct: 387 AKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 172/366 (46%), Gaps = 25/366 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D L + R     A  F     D+ G   N  TYN M+       Q      + 
Sbjct: 229 VTYNTIIDSLCKDRLVND-AMEFLSEMLDR-GIPPNVFTYNCMVHGFCILGQLNEATRLF 286

Query: 269 EEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           +EM G   +    T  I ++         +A  +FE M +   +  + T N L++     
Sbjct: 287 KEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQ 346

Query: 328 KLPKEAQLLFD-KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           +L  EA+ +F+  ++    P + +Y +L+ G+C+ + + EA  +  EM  K   PD V +
Sbjct: 347 RLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTY 406

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           + +++GL + G+  +A+ +F+ M + G  PN+ +Y+I++  FCK                
Sbjct: 407 STLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQE 466

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N   +T LI G     ++++  +L  ++   G  P   TY  +IK +  + + DE
Sbjct: 467 KKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDE 526

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  ++++M   GF P   +YN++++ + Q  +     ++ DEM+ +    + +++ +L+ 
Sbjct: 527 AYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL- 585

Query: 547 GLISQD 552
            L SQD
Sbjct: 586 DLESQD 591



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 58/123 (47%)

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           +K     V +  +M   G    +++ N+++    +  + +    +  +M + G  P  ++
Sbjct: 101 KKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTAST 160

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           +  LI GL ++ +  EA +   EM+ +G +  V+ YN     L + G + +  ++ +KM 
Sbjct: 161 FNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKME 220

Query: 601 FSG 603
            +G
Sbjct: 221 QNG 223


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 192/443 (43%), Gaps = 43/443 (9%)

Query: 194  LDRNMEAVLDE-----CGINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSR 246
            L+  ME V +      CG  LS ++VVDVL    HAR   P  +FF W   + G+ H + 
Sbjct: 1607 LETEMEEVREHKLREYCG-KLSTDIVVDVLN---HARDVEPTIQFFEWCHGRHGYTHTAF 1662

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME----TFKIAMNAFAAAKERKKAVAIF 302
             +N ++  L   RQ++    ML  + E    S +    T+   +  +    E ++A+A+ 
Sbjct: 1663 AFNRLLEFLVNKRQYKRAHQML--IAESKPSSFQANAFTYSTIVRGYCEDGETRQALALL 1720

Query: 303  ELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
            E M K +  A     N +L +L +    KEA  LL         P++ TY +L+   C+V
Sbjct: 1721 EHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKV 1780

Query: 362  KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG----KRSDAIKLFEVMKAKGPSPN 417
              L +A  +   M  +    D+V +N ++ GL + G    +   A +LFE M  KG +P 
Sbjct: 1781 GRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPT 1840

Query: 418  VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
              +YT++I                       C  +   Y  LI  F     MD   DL  
Sbjct: 1841 SVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFV 1900

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            EM  RGC PD +TYN+++         +EA +++ EM   G  P   TY  I  +  + G
Sbjct: 1901 EMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAG 1960

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
              +       EM + G   D  SY  LI  +    +    ++ L EMLEKG K  ++ +N
Sbjct: 1961 RMQDAHAYLVEMRKEGLV-DAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFN 2019

Query: 578  KFAADLSRAGRSYVLDELAQKMR 600
                 LS+   +     + Q++R
Sbjct: 2020 VVFEALSKESNTDDAKIMIQELR 2042



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 119/280 (42%), Gaps = 49/280 (17%)

Query: 181  IERVCKV--IDELFSLDRNMEAVLDECGINL-SHNLVVDVL-----ERFRHARRPAFRFF 232
            I  +CKV  +++   L   M+A   EC  ++ ++N ++  L      RFR  R  AFR F
Sbjct: 1774 INALCKVGRLEDAQGLVEMMQA--RECPTDIVTYNTLIHGLCRKGNGRFRVER--AFRLF 1829

Query: 233  CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAA 291
                DK G    S TY  ++  L R +  E    +L+ M E G    + T+ + +N FA 
Sbjct: 1830 EEMVDK-GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAK 1888

Query: 292  AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
            A    KA+ +F  M        V T N +++   ++   +EA  LF ++K R   PN  T
Sbjct: 1889 AGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRT 1948

Query: 351  YT----------------------------------VLLGGWCRVKNLMEAGRVWNEMID 376
            YT                                   L+   C++       ++  EM++
Sbjct: 1949 YTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGFQLLREMLE 2008

Query: 377  KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            KGFKP++V  N++ E L K     DA  + + ++ +  SP
Sbjct: 2009 KGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSP 2048


>gi|225460540|ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360
           [Vitis vinifera]
 gi|296081020|emb|CBI18524.3| unnamed protein product [Vitis vinifera]
          Length = 513

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 206/460 (44%), Gaps = 30/460 (6%)

Query: 171 SYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGIN--LSHNLVVDVLERFRHARR-- 226
           S+ S     EI+RV ++I++    D  + + L +      LS+  V +VL R   A    
Sbjct: 33  SHPSLEIKSEIDRVTRIINDHPFPDHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHSNG 92

Query: 227 -PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFK 283
             AF FF ++     F  +S  +   + IL R R F+    ++EE+ +    LL++++  
Sbjct: 93  FKAFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMS 152

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           I ++  A  +  +  +  F  M K  F   + G +  N LL      +  KEA+ +F K+
Sbjct: 153 IMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFHKM 212

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
             RF+PN  T  +LL G+    ++      ++EMI +GFKP+ V +NI ++   K G   
Sbjct: 213 HSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNSVTYNIRIDAYCKKGCFG 272

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIW--------------------KFCKQNAAVYTCLI 440
           D ++L E M+     P + + T +I                     +  + +  VY   +
Sbjct: 273 DGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIRNLQPDIGVYNAFM 332

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +     R +     L+ EMEE G   D +TY+ + + +      +    +Y +M+R  F 
Sbjct: 333 SSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFV 392

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   T  M+MK + Q    ++   +W  +I RG CP  ++  +L+ GL S  +  EA + 
Sbjct: 393 PKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVEC 452

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            ++ LE+G       +      L  AG   +L +L Q ++
Sbjct: 453 AKQTLERGRPMSEGVFRMLERYLVEAGEGEMLWKLDQMIK 492


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 183/371 (49%), Gaps = 20/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF     TY++++  L R  + +    +LEEM  +G   +  T+   +NA       K+A
Sbjct: 96  GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEA 155

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK---LKHRFTPNLTTYTVLL 355
            ++ E M        + T   +++ L +    + A  + D+   ++   +P++ T+  +L
Sbjct: 156 FSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+ + +++A  V+   +++G +P+VV ++ +++GL K+ K  +A++L   M   G  
Sbjct: 216 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG-- 273

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C+ N   Y+ ++ G     RM+    +L++M + GC PD +TYN LI
Sbjct: 274 -------------CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLI 320

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                ++   EAV + +EM+ +GF P++ TY  +     ++G ++   ++ D M  RGC 
Sbjct: 321 DGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCA 380

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGRSYVLDE 594
           P+  +Y+ ++ GL    R  EA  Y E+M    + AP V+ Y+     L +AG+     E
Sbjct: 381 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYE 440

Query: 595 LAQKMRFSGKF 605
             ++M  +G+ 
Sbjct: 441 FLERMIRAGRI 451



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 155/363 (42%), Gaps = 61/363 (16%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-- 343
           ++    +++  KA+ +F+ M        V T   L++ LG+ +  KEA  LF++ + +  
Sbjct: 2   IDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 61

Query: 344 -----------------------------------FTPNLTTYTVLLGGWCRVKNLMEAG 368
                                              F P + TY+ L+ G CR   + +  
Sbjct: 62  HPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGC 121

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           ++  EM  +G  P+ V +N ++  LL  G+  +A  L E M A G  P + ++ ++I   
Sbjct: 122 KLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGL 181

Query: 429 CKQ----------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           CK+                      +   +  ++ G    +R+   +++ K   ERGC P
Sbjct: 182 CKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRP 241

Query: 467 DGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           + +TY+ LI  L K+ KM DEA+++  +MV  G +    TY+ ++    + G  E    V
Sbjct: 242 NVVTYSTLIDGLSKMAKM-DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M   GC PD  +Y  LI G   + R  EA   L EMLE G    V+ Y      L R
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 586 AGR 588
           +GR
Sbjct: 361 SGR 363



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 181/390 (46%), Gaps = 27/390 (6%)

Query: 240 GFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
           G A N+ TYN+++ ++LG+ R  E   S+LE+M   G    + TF + +       E + 
Sbjct: 131 GCAPNAVTYNTLVNALLGQGRSKEAF-SLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 298 AVAIFE--LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
           A  + +   M +      V T N +L+ L + +   +A  +F + L+    PN+ TY+ L
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL 249

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G  ++  + EA ++  +M++ G + + V ++ +++GLLK+G+  DA+ +   M+  G 
Sbjct: 250 IDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGC 309

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+  +Y  +I  F K+                    +   YT L  G     R D   +
Sbjct: 310 LPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVE 369

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSY 513
           +L  M  RGC P+ +TY++++  +       EA+  +++M R     P +  Y+ ++   
Sbjct: 370 ILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGL 429

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  +   +  + MIR G  PD  ++++LI GL    R     +    M E+G    +
Sbjct: 430 CKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDM 489

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + Y      L RA R     +L Q+MR  G
Sbjct: 490 VTYATLVDRLCRASRVDEAFDLFQQMRSDG 519



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 26/267 (9%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G C+ + + +A  ++ +M+DK   PDVV +  +++GL K  +  +A  LFE  +AKG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 414 PSPNVRSYTIMIWKFCK----QNA-----------------AVYTCLITGFGNRRRMDIV 452
             P V +Y  MI   CK    +NA                   Y+ LI G      +D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             LL+EM  RGC P+ +TYN L+  +  Q    EA  + ++M  +G  P + T+ +I+K 
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 513 YFQTGNYEMGRKVWDE--MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             + G  E   +V DE  MI  G  PD  ++  ++ GL  + R  +A+   +  LE+G +
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQ 597
             V+ Y+     LS+  +   +DE  Q
Sbjct: 241 PNVVTYSTLIDGLSKMAK---MDEALQ 264



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 168/375 (44%), Gaps = 37/375 (9%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVL---ERFRHARRPAFRFFCWAG 236
           EIE   +V+DE+F ++  +   +      ++ N V+D L   +R   A    F+     G
Sbjct: 186 EIEAAFRVVDEMFMIESGLSPDV------ITFNSVLDGLCKEQRILDAHN-VFKRALERG 238

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
            +P    N  TY++++  L +  + +  + +L +M E G   +  T+   ++        
Sbjct: 239 CRP----NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 294

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           + AV +   M          T N L++    R +L +   LL + L+  F P++ TYT L
Sbjct: 295 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 354

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKG 413
             G CR     EA  + + M  +G  P+ + ++ +++GL K G+ ++A+  FE M + + 
Sbjct: 355 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            +P+V +Y+ +I   CK                     +   ++ LI G  +  R+D   
Sbjct: 415 VAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 474

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +L + M ERGC PD +TY  L+  +      DEA  ++++M   G  P   T   ++   
Sbjct: 475 ELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL 534

Query: 514 FQTGNYEMGRKVWDE 528
            +    E  +++ DE
Sbjct: 535 LEVNRDEDAKRIQDE 549



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 1/166 (0%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           +I G    R++D    L K+M ++   PD +TY ALI  +  Q+   EA  +++E    G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM-IRRGCCPDDNSYTVLIGGLISQDRSGEA 557
             PT+ TYN ++    + G  E    ++D+M I  G  P   +Y+ LI GL       + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            K LEEM  +G     + YN     L   GRS     L ++M  +G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANG 166


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 186/418 (44%), Gaps = 58/418 (13%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           +S TYN+M++ L ++ + +  + +LEEM + G   ++ ++   ++ F  A   + A+ + 
Sbjct: 43  DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 102

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E M        V +   ++  L +     EA  + DK+  R   PN+ TY  L+ G+CRV
Sbjct: 103 EQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL---------------------------- 393
            +L  A  +  +M ++G++P+ + +N ++ GL                            
Sbjct: 163 GDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFT 222

Query: 394 --------LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
                   +K GK  DA +L E M +KG SPNV +Y+ ++   CK               
Sbjct: 223 YSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282

Query: 432 ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                 N   Y  +I G     R+D  Y LL+EM + GC P+ +TY  L+         +
Sbjct: 283 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 342

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A+ + + MV  G+ P + TYN ++  + +    E   ++   MI++GC P+  SY  +I
Sbjct: 343 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 402

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL    +  E    LE+ML       ++ +N     + +  R  +  EL   ++ SG
Sbjct: 403 AGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 460



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 189/445 (42%), Gaps = 71/445 (15%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM 279
           FC  GD            + G+  N+ TYN++M  L   R+ ++ + + +EM E G    
Sbjct: 159 FCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPP 218

Query: 280 E--TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           +  T+   +++   + +   A  + E M        V T + LL  L ++    EA  L 
Sbjct: 219 DVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALL 278

Query: 338 DKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            ++ +   +PN+ TY  ++ G C++  + EA  +  EM+D G +P+VV + ++L+   K 
Sbjct: 279 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 338

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           GK  DAI L EVM  KG  PN+ +Y  ++  FCK+                    N   Y
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398

Query: 437 TCLITGFGNRR-----------------------------------RMDIVYDLLKEMEE 461
             +I G                                        R+DI Y+L   ++E
Sbjct: 399 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE 458

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYE 520
            GC P+ +TYN+L+  +   +  D+A  + +EM R  G  P I TYN ++    ++   +
Sbjct: 459 SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVD 518

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              K++ +M+  G  PDD +Y+++I  L       EA   LE ML+ G     + Y    
Sbjct: 519 RAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLI 578

Query: 581 ADLSRAGRSYVLDELAQKMRFSGKF 605
               + G      E+ Q +   G +
Sbjct: 579 DGFCKTGNLDKALEILQLLLSKGSY 603



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 182/389 (46%), Gaps = 23/389 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G + N  TYN+++    +  + +    +LEEM + G   ++ T+ + ++AF    + +
Sbjct: 283 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 342

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A+ + E+M +  +   + T N LL+   +  ++ +  QLL   ++    PN+ +Y  ++
Sbjct: 343 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 402

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   + E   +  +M+     PD+V  N +++ + K  +   A +LF +++  G +
Sbjct: 403 AGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCT 462

Query: 416 PNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYD 454
           PN+ +Y  ++   CK                      +   Y  +I G    +R+D  Y 
Sbjct: 463 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 522

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  +M   G  PD +TY+ +I  +   +  DEA  + + M+++GF P   TY  ++  + 
Sbjct: 523 LFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 582

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +TGN +   ++   ++ +G  PD  ++++ I  L  + R  +A + LE ML  G+    +
Sbjct: 583 KTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTV 642

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            YN        A R+    +L + MR  G
Sbjct: 643 TYNTLLKGFCDASRTEDAVDLFEVMRQCG 671



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           MN+   KA       +L  L  +    +A L F ++     P+  TY  ++ G  +   L
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI- 423
            +A R+  EM+D GF P+V ++N +L G  K  +  +A+ L E M  +G  P+V SYT  
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 424 -------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                              MI + C+ N   Y  L+ GF     +D   +L+++M ERG 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGR 523
            P+ +TYN ++  +   +  D A++++KEM  SG   P + TY+ I+ S  ++G  +   
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           ++ + M+ +GC P+  +Y+ L+ GL    +  EA   L+ M   G    ++ YN      
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300

Query: 584 SRAGR 588
            + GR
Sbjct: 301 CKLGR 305



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 166/353 (47%), Gaps = 27/353 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  N  TYNS++ +  +  + E    +L  M +KG + ++ ++   +     A +  + 
Sbjct: 355 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 414

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V + E M        + T N +++ + ++     A  LF+ ++    TPNL TY  L+ G
Sbjct: 415 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474

Query: 358 WCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            C+ +   +A  +  EM  K G  PD++ +N +++GL K  +   A KLF  M + G +P
Sbjct: 475 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 534

Query: 417 NVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
           +  +Y+I+I   CK                      A  Y  LI GF     +D   ++L
Sbjct: 535 DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEIL 594

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           + +  +G  PD +T++  I  +  +    +A  + + M+R+G  P   TYN ++K +   
Sbjct: 595 QLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDA 654

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              E    +++ M + GC PD+ +YT L+G L+ +    ++YK L   + K M
Sbjct: 655 SRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDK----KSYKDLLAEVSKSM 703



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 1/174 (0%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           K +A V+  ++ G  +  +        +EM  + CPPD +TYN +I  +      D+A+R
Sbjct: 7   KAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIR 65

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           + +EMV +GF P + +YN ++  + +    E    + ++M+ RGC PD  SYT +I GL 
Sbjct: 66  LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLC 125

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             D+  EA + +++M+++G +  V+ Y        R G      EL +KM   G
Sbjct: 126 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 16/227 (7%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG K     H  +L GL   G+ SDA+  F  M                 K C  ++  Y
Sbjct: 4   KGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS----------------KTCPPDSVTY 47

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             +I G     R+D    LL+EM + G  P+  +YN ++         + A+ + ++MV 
Sbjct: 48  NTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVM 107

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G  P + +Y  ++    +    +   +V D+MI+RGC P+  +Y  L+ G         
Sbjct: 108 RGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDG 167

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A + + +M E+G +   + YN     L    +     +L ++M  SG
Sbjct: 168 AVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESG 214


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 181/404 (44%), Gaps = 27/404 (6%)

Query: 223 HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF 282
           H  +  F      G KP       TY ++++ L R ++F+++ ++L ++ + G+      
Sbjct: 39  HEAQAVFNNLTEEGHKPTLI----TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSIL 94

Query: 283 KIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
             AM NAF+ + +  +A+ IF+ M +Y  K    T N L++  G +  P E+  L + + 
Sbjct: 95  LNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMG 154

Query: 342 H--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 PN  TY +L+  WC  K L EA  V ++M+  G +PDVV +N M     + G+ 
Sbjct: 155 QDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGET 214

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A +L   M      PN R+  I+I  +CK+                    N  V+  L
Sbjct: 215 ERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSL 274

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G+ +    + V + L  MEE G  PD +T++ ++       + +    I+ +MV++G 
Sbjct: 275 IKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGI 334

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P IH Y+++ K Y + G       +   M + G  P+   +T +I G  +  +   A++
Sbjct: 335 EPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFR 394

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             E+M E G    +  Y         A + +  +EL   M   G
Sbjct: 395 LCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERG 438



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 18/258 (6%)

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +G+ K P EAQ +F+ L      P L TYT L+    R K       + +++ D G KPD
Sbjct: 33  IGKGK-PHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPD 91

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
            +  N M+    + GK  +A+K+F+ MK  G               CK   + Y  LI G
Sbjct: 92  SILLNAMINAFSESGKVDEAMKIFQKMKEYG---------------CKPTTSTYNTLIKG 136

Query: 443 FGNRRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           FG   R      LL+ M ++    P+  TYN LI+    +K  +EA  +  +MV SG +P
Sbjct: 137 FGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQP 196

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TYN + ++Y Q G  E   ++  +M      P++ +  ++I G   +    EA ++L
Sbjct: 197 DVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFL 256

Query: 562 EEMLEKGMKAPVLDYNKF 579
             M E G+    + +N  
Sbjct: 257 YRMKELGVDPNPVVFNSL 274



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 140/345 (40%), Gaps = 60/345 (17%)

Query: 240 GFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERK 296
           G    + TYN+++   G A R +E+M  +LE MG+   +     T+ I + A+   K+ +
Sbjct: 122 GCKPTTSTYNTLIKGFGIAGRPYESM-KLLEMMGQDENVKPNDRTYNILIQAWCTKKKLE 180

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL 355
           +A  +   M     +  V T N +     ++   + A+ L  K+ +    PN  T  +++
Sbjct: 181 EAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIII 240

Query: 356 GGWCRVKNLMEAGR---------------VWNEMI--------------------DKGFK 380
            G+C+  N+ EA R               V+N +I                    + G K
Sbjct: 241 SGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIK 300

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
           PDVV  + ++      G   +  ++F  M   G  P++ +Y+I+   + +          
Sbjct: 301 PDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEAL 360

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      N  ++T +I+G+    +MD  + L ++M E G  P+  TY  LI     
Sbjct: 361 LTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGE 420

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            K P +A  +   M   G  P + T  ++  ++   G ++   ++
Sbjct: 421 AKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANRI 465



 Score = 45.4 bits (106), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 470 TYNALIKLMKI---QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           T +A  KLM     +  P EA  ++  +   G KPT+ TY  ++ +  +   ++    + 
Sbjct: 21  TVHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALL 80

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            ++   G  PD      +I       +  EA K  ++M E G K     YN        A
Sbjct: 81  SKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIA 140

Query: 587 GRSY 590
           GR Y
Sbjct: 141 GRPY 144


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 181/397 (45%), Gaps = 23/397 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
           TY ++++ L + + FE++  ++ ++ E G+        AM NAF+ +   K+A+ IF+ M
Sbjct: 95  TYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKM 154

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEA--QLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
                K    T N L++  G +  P+E    L    L     PN  TY +L+  WC  KN
Sbjct: 155 KDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKN 214

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + EA  V ++M+  G +PDVV +NI+     + G+   A  L   M+ +  +PN R+  I
Sbjct: 215 IEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGI 274

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++  +CK+                    N  ++  LI GF +    D V + L  MEE G
Sbjct: 275 IVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYG 334

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +T++ ++       + D+   I+ +M ++G +P IH ++++ K Y + G  E   
Sbjct: 335 VKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAE 394

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            V   M + G  P+    T +I G  S  +   A    E+M E G+   +  +       
Sbjct: 395 SVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGY 454

Query: 584 SRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKN 620
           + A +    +EL Q M   G F   + +   A+  +N
Sbjct: 455 AEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAWRN 491



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 324 LGRSKLPKEAQLLFDKL---KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           +G+ K P EA L+FD L    HR  P L TYT L+    ++K+      + +++ + G K
Sbjct: 69  IGKGK-PHEANLIFDNLVEDGHR--PTLITYTTLVAALTKLKHFESIFLLISKVEENGMK 125

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           PD + +N M+    + G   +A+K+F+ MK  G               CK   + +  LI
Sbjct: 126 PDSILYNAMINAFSESGNVKEAMKIFQKMKDTG---------------CKPTTSTFNTLI 170

Query: 441 TGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
            G+GN  + +    +L  M   G   P+  TYN L++    +K  +EA  +  +MV SG 
Sbjct: 171 KGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGI 230

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P + TYN++ ++Y Q G       +  EM      P++ +  +++ G   +    EA +
Sbjct: 231 QPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALR 290

Query: 560 YLEEMLEKGMKAPVLDYNKF 579
           ++  M E G+   ++ +N  
Sbjct: 291 FVYRMKELGVHPNLVIFNSL 310



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 7/158 (4%)

Query: 470 TYNALIKLMKI---QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           T ++  KLM I   +  P EA  I+  +V  G +PT+ TY  ++ +  +  ++E    + 
Sbjct: 57  TVHSRTKLMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLI 116

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            ++   G  PD   Y  +I          EA K  ++M + G K     +N        A
Sbjct: 117 SKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNA 176

Query: 587 GRSYVLDELAQKMRFSGKFEVS----NVLARWAETTKN 620
           G+     ++   M   G  + +    N+L R   + KN
Sbjct: 177 GKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKN 214


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 170/351 (48%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY +++  L + ++ +  V+++E++   G   ++ T+   +N        ++A
Sbjct: 29  GCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 88

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   +        V T   L++ LG+ K   EA  LF ++  R    +   YT L+ G
Sbjct: 89  IDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRG 148

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +   + +A  V+  M  +G  PDVV  + M++GL K G+   A+++F+ M+A+G +PN
Sbjct: 149 LLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN 208

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                            VY+ LI G    R+MD   ++L +M++  C PD +TYN LI  
Sbjct: 209 ---------------EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 253

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +        A   + EM+ +G KP ++TYN+++  + + GN +    V+D+M    C P+
Sbjct: 254 LCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPN 313

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y  LI GL  + +  +A  Y + M E+G       Y+     L ++G+
Sbjct: 314 VVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 19/342 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T++ +++ L +A       S+ +E    G  + + T+   ++  A  K+ ++AVA+ E +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N LL  L +  +L +   LL   + +  TP++ TYT L+ G  + K  
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA +++ EM  +G   D V +  ++ GLL+ GK   A  +++ M ++G  P+V + + M
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKM 483
           I   CK                 R+     + K ME RG  P+ + Y+ALI  L K +KM
Sbjct: 181 IDGLCKAG---------------RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 225

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            D A+ +  +M ++   P   TYN+++    ++G+    R  +DEM+  GC PD  +Y +
Sbjct: 226 -DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNI 284

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           LI G      +  A    ++M        V+ Y    + L +
Sbjct: 285 LISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCK 326



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 140/310 (45%), Gaps = 16/310 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           TF I +N    A    +A ++ +          + T   +++ L ++K  +EA  L +K+
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             +  TP + TY  LL G C++  L EA  +  +++D G  PDVV +  +++GL K  + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A KLF+ M ++G +                +   YT LI G     ++     + K M
Sbjct: 121 FEAYKLFKEMASRGLA---------------LDTVCYTALIRGLLQAGKIPQASSVYKTM 165

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             +GC PD +T + +I  +        AVRI+K M   G  P    Y+ ++    +    
Sbjct: 166 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 225

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +   ++  +M +  C PD  +Y +LI GL        A  + +EMLE G K  V  YN  
Sbjct: 226 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL 285

Query: 580 AADLSRAGRS 589
            +   +AG +
Sbjct: 286 ISGFCKAGNT 295



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 140/326 (42%), Gaps = 52/326 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A ++  Y +++  L +A +     S+ + M  +G +  + T    ++    A     A
Sbjct: 134 GLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAA 193

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           V IF+ M            + L+  L +++    A  +  ++K  F TP+  TY +L+ G
Sbjct: 194 VRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 253

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++  A   ++EM++ G KPDV  +NI++ G  K G    A  +F+ M +   SPN
Sbjct: 254 LCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPN 313

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
           V +Y  +I   CK               RR++       + M+ERGCPPD   Y++L+  
Sbjct: 314 VVTYGTLISGLCK---------------RRQLTKASLYYQHMKERGCPPDSFVYSSLVDG 358

Query: 477 LMKIQKMP---------------------------------DEAVRIYKEMVRSGFKPTI 503
           L K  K+                                  DEAV ++  + + G  P  
Sbjct: 359 LCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHP 417

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEM 529
           + YN I+ +  ++G    G+ V+ EM
Sbjct: 418 YAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 16/249 (6%)

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           T+++L+ G  +   L++A  +  E    G   D+  +  +++ L K  K  +A+ L E +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
            A G +P + +Y  ++   CK                 R++   DLL+++ + GC PD +
Sbjct: 61  TANGCTPTIATYNALLNGLCKMG---------------RLEEAIDLLRKIVDNGCTPDVV 105

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TY +LI  +  +K   EA +++KEM   G       Y  +++   Q G       V+  M
Sbjct: 106 TYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTM 165

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR- 588
             +GC PD  + + +I GL    R G A +  + M  +G+    + Y+     L +A + 
Sbjct: 166 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 225

Query: 589 SYVLDELAQ 597
              L+ LAQ
Sbjct: 226 DCALEMLAQ 234



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%)

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           T++ LI  +    M  +A  + +E   +G    IHTY  I+    +    +    + +++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              GC P   +Y  L+ GL    R  EA   L ++++ G    V+ Y      L +  RS
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 590 YVLDELAQKMRFSG 603
           +   +L ++M   G
Sbjct: 121 FEAYKLFKEMASRG 134


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 184/413 (44%), Gaps = 25/413 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY ++++   RA++ E  + +LEEM E+G   ++ T+ + ++A         A
Sbjct: 52  GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 111

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M +  F   V T N L++    R  +    +LL   +     PN+ TY+ L+ G
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ +  +EA  V  EM   G  PD   ++ ++ GL K  K  +A ++   M   G +P+
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y+ +I  FCK                     +   Y  +I G     ++     +L 
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291

Query: 458 EMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M+E G   PD +TY+ +I  +    M  EA ++   M ++G  P + TY  I+    + 
Sbjct: 292 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 351

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E    +   M R GC P+  +YT LI GL    +  EA + +EEM   G    ++ Y
Sbjct: 352 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 411

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRIE 629
           N     L  +GR     +L Q+M+  G+ E S   A +  T  N +   D ++
Sbjct: 412 NTMVNGLCVSGRIKEAQQLVQRMK-DGRAECSPDAATY-RTIVNALMSSDLVQ 462



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 167/350 (47%), Gaps = 25/350 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GFA N  T+NS++    +    +    +L  M  KG+  ++ T+   ++    +++  +A
Sbjct: 122 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + E M          T + L+  L ++   +EA+ +  ++     TP++  Y+ ++  
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-P 416
           +C+   L+EA +   EM  +   PDVV +N +++GL K+GK ++A  + + M+  G   P
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLP 301

Query: 417 NVRSYTIMIWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLL 456
           +V +Y+ +I   CK +  V                    YT +I G     R++    LL
Sbjct: 302 DVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 361

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           + M+  GC P+ +TY  LI  +   +  DEA R+ +EM  +G  P + TYN ++     +
Sbjct: 362 QGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 421

Query: 517 GNYEMGRKVWDEMI--RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           G  +  +++   M   R  C PD  +Y  ++  L+S D   EA + LE+M
Sbjct: 422 GRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 18/245 (7%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C   +L  A  +  EM   GF PD   H  ++  +   G    A+   + +++ G  PNV
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLRSMGCDPNV 57

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +YT                LI  F   ++++    LL+EM ERGCPP+ +TYN L+  +
Sbjct: 58  VTYTA---------------LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDAL 102

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
               M   A  + K+M+  GF P + T+N ++  + + GN +  RK+   M+ +G  P+ 
Sbjct: 103 CKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNV 162

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y+ LI GL    +  EA + LEEM   G+      Y+     L +A +    +++ ++
Sbjct: 163 VTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRR 222

Query: 599 MRFSG 603
           M  SG
Sbjct: 223 MAGSG 227



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 26/290 (8%)

Query: 336 LFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           L +++K   F P+  T+T ++       +L  A    + +   G  P+VV +  ++    
Sbjct: 12  LLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFA 68

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAA 434
           +  K  +A+KL E M+ +G  PN+ +Y +++   CK                     N  
Sbjct: 69  RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 128

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKE 493
            +  L+ GF  R  +D    LL  M  +G  P+ +TY+ALI  L K QK   EA  + +E
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFL-EAKEVLEE 187

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M  SG  P   TY+ ++    +    E   ++   M   GC PD   Y+ +I       +
Sbjct: 188 MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             EA K L+EM ++     V+ YN     L + G+      +  +M+ SG
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 204/445 (45%), Gaps = 25/445 (5%)

Query: 163 SESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           SE  +  +  + T   R + ER  +++ ++F    + E  L+   + + H LV +V+ + 
Sbjct: 38  SEEAVAPIERRYTRSVRVMDERFIRIL-KIFKWGPDAEKALEVLMLKVDHWLVREVM-KT 95

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
                   +FF WA  K  + H++ TY +++  L    Q+  M  M++EM    +  +  
Sbjct: 96  DVGVNVKMQFFRWAAKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTP 155

Query: 282 FKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +++  +     AK   KAVAIF  +   K +      N ++  L      ++   L+++
Sbjct: 156 MELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNE 215

Query: 340 LK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           +    H F P+  TY+ L+  +C++     A R+ NEM D G +P    + +++    K+
Sbjct: 216 MSNEGHCF-PDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKL 274

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
                A+ LFE M+                ++C+ +   YT LI G G   R D  Y+  
Sbjct: 275 NNVHGALGLFEEMRH---------------QYCRPDVFTYTELIRGLGKAGRFDEAYNFF 319

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM   GC PD +  N +I  +      D+AV++++EM      P++ TYN I+K+ F++
Sbjct: 320 HEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFES 379

Query: 517 GNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            +       W E ++  G  P   +Y++LI G    +R+ +A   LEEM EKG       
Sbjct: 380 KSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAA 439

Query: 576 YNKFAADLSRAGRSYVLDELAQKMR 600
           Y      L +A R  +  EL Q+++
Sbjct: 440 YCSLIDALGKAKRYDIAHELFQELK 464



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 171/416 (41%), Gaps = 62/416 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAI 301
            ++ YNSM+ +L    Q+E +  +  EM  +G       T+   ++AF     +  A+ +
Sbjct: 189 TAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRL 248

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
              M     +        L+    +      A  LF++++H++  P++ TYT L+ G  +
Sbjct: 249 LNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGK 308

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM----------- 409
                EA   ++EM  +G +PD V  N M+  L K G+  DA+KLFE M           
Sbjct: 309 AGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVT 368

Query: 410 -------------------------KAKGPSPNVRSYTIMIWKFCKQN------------ 432
                                    K  G SP+  +Y+I+I  FCK N            
Sbjct: 369 YNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 433 --------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                    A Y  LI   G  +R DI ++L +E++E         Y  +IK +      
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+AV ++ EM + G  P ++ YN +M    + G  +        M   GC PD NSY ++
Sbjct: 489 DDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNII 548

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           + GL        A + L  M +  +K   + YN     +S AG   + +E A+ M+
Sbjct: 549 LNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAG---LFEEAAKLMK 601



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 153/335 (45%), Gaps = 20/335 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI--AMNAFAAAKERKKAVAIFEL 304
           TY  ++  LG+A +F+   +   EM  +G    +T  I   +N    A     AV +FE 
Sbjct: 298 TYTELIRGLGKAGRFDEAYNFFHEMRREGCRP-DTVVINNMINFLGKAGRLDDAVKLFEE 356

Query: 305 MNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
           M   +    V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+  
Sbjct: 357 MGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTN 416

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
              +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y 
Sbjct: 417 RTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYA 476

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           +MI                  G   R+D   +L  EM + GC P+   YNAL+  +    
Sbjct: 477 VMI---------------KHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAG 521

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M DEA+   + M   G  P I++YN+I+    +TG      ++   M +    PD  SY 
Sbjct: 522 MLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYN 581

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            ++G +       EA K ++EM   G +  ++ Y+
Sbjct: 582 TVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYS 616



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 130/269 (48%), Gaps = 18/269 (6%)

Query: 247 TYNSMMSILGRAR-QFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           TYN+++  L  ++ +   + S  E M   G+  S  T+ I ++ F      +KA+ + E 
Sbjct: 368 TYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGGWCRVKN 363
           M++  F         L++ LG++K    A  LF +LK    + +   Y V++    +   
Sbjct: 428 MDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGR 487

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  +++EM   G  P+V A+N ++ GL + G   +A+     M+  G  P++ SY I
Sbjct: 488 LDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNI 547

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           ++    K          TG G  R M+    +L  M++    PD ++YN ++  M    +
Sbjct: 548 ILNGLAK----------TG-GPHRAME----MLSNMKQSAIKPDAVSYNTVLGAMSHAGL 592

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            +EA ++ KEM   GF+  + TY+ I+++
Sbjct: 593 FEEAAKLMKEMNVLGFEYDLITYSSILEA 621



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 2/188 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             AV +F+ MNK      V   N L+  L R+ +  EA     +++ H   P++ +Y ++
Sbjct: 489 DDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNII 548

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G  +      A  + + M     KPD V++N +L  +   G   +A KL + M   G 
Sbjct: 549 LNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGF 608

Query: 415 SPNVRSYT 422
             ++ +Y+
Sbjct: 609 EYDLITYS 616



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++R Y  M+  LG+A + +  V++ +EM + G   ++  +   M+  A A    +A+   
Sbjct: 471 SARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTM 530

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M ++     +++ N +L  L ++  P  A  +   +K     P+  +Y  +LG     
Sbjct: 531 RRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHA 590

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               EA ++  EM   GF+ D++ ++ +LE + K+
Sbjct: 591 GLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKV 625


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 197/430 (45%), Gaps = 32/430 (7%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDE-----CGINL-SHNLVVDVLERFRHARRPAFRFFCW 234
           +E VCK         + ME VLDE     C  N+ ++N++++ +   R  R    R F  
Sbjct: 218 LEAVCKST----GFGQAME-VLDEMRAKGCTPNIVTYNVIINGM--CREGRVDDAREFLN 270

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAK 293
                GF  ++ +Y +++  L  A+++E +  +  EM EK  +  E TF + +  F    
Sbjct: 271 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 330

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYT 352
             ++A+ + E M+ +   A     N ++  + +     +A Q L +   +  +P+  +YT
Sbjct: 331 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 390

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            +L G CR +   +A  +  EM+ K   P+ V  N  +  L + G    A  L E M   
Sbjct: 391 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEH 450

Query: 413 GPSPNVRSYTIMIWKFC-----------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           G   N+ +Y  ++  FC                 K N   YT L+TG  N  R+D   +L
Sbjct: 451 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAEL 510

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM ++ C P+ +T+N L+     + + DEA+ + ++M+  G  P + TYN ++    +
Sbjct: 511 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITK 570

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
             N E   ++   ++  G  PD  +Y+ +IG L  +DR  EA K    + + GM+   + 
Sbjct: 571 DCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVI 630

Query: 576 YNKFAADLSR 585
           YNK    L +
Sbjct: 631 YNKILLALCK 640



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 16/257 (6%)

Query: 332 EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           EA  L D + HR   P++ TYTVLL   C+     +A  V +EM  KG  P++V +N+++
Sbjct: 194 EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVII 253

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
            G+ + G+  DA +    + + G  P+  SYT ++   C                 +R +
Sbjct: 254 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA---------------KRWE 298

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            V +L  EM E+ C P+ +T++ L++      M + A+++ ++M   G        N+++
Sbjct: 299 DVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 358

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            +  + G  +   +  + M   GC PD  SYT ++ GL   +R  +A + L+EM+ K   
Sbjct: 359 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 418

Query: 571 APVLDYNKFAADLSRAG 587
              + +N F   L + G
Sbjct: 419 PNEVTFNTFICILCQKG 435



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 157/346 (45%), Gaps = 25/346 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AF+F    G   G + ++ +Y +++  L RA ++E    +L+EM  K     E TF   +
Sbjct: 370 AFQFLNNMGSY-GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 428

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                    ++A  + E M+++  +  + T N L+           A  LF  +  +  P
Sbjct: 429 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--P 486

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  TYT LL G C  + L  A  +  EM+ K   P+VV  N+++    + G   +AI+L 
Sbjct: 487 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 546

Query: 407 EVMKAKGPSPNVRSYTIM---IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           E M   G +PN+ +Y  +   I K C    A+                  +LL  +   G
Sbjct: 547 EQMMEHGCTPNLITYNTLLDGITKDCNSEEAL------------------ELLHGLVSNG 588

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +TY+++I ++  +   +EA++++  +   G +P    YN I+ +  +  N +   
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +  M+  GC P++ +Y  LI GL ++D   E    L E+  +G+
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 17/238 (7%)

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A R+ +    +G  PDV     ++  L + G+ SDA ++    +  G + +V +Y  ++ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 427 KFCK-----------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
            +C+                  +A  YT +I G  +R R+     LL +M  RGC P  +
Sbjct: 153 GYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVV 212

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TY  L++ +       +A+ +  EM   G  P I TYN+I+    + G  +  R+  + +
Sbjct: 213 TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 272

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
              G  PD  SYT ++ GL +  R  +  +   EM+EK      + ++       R G
Sbjct: 273 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 330


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 175/354 (49%), Gaps = 26/354 (7%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+  +   ++ +LE+ G   +  + T+ + ++ +    E   A+   +L+++      V 
Sbjct: 159 GKTWKATRVMEILEDSG--AVPDVITYNVLISGYCKTGEIGSAL---QLLDRMSVSPDVV 213

Query: 316 TINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N +L  L  S   KEA  + D+ ++    P++ TYT+L+   C+   + +A ++ +EM
Sbjct: 214 TYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEM 273

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI----------- 423
            DKG KPDVV +N+++ G+ K G+  +AI+    M + G  PNV ++ I           
Sbjct: 274 RDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRW 333

Query: 424 ---------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                    MI K C  +   +  LI     +  +    D+L++M + GC P+ L+YN L
Sbjct: 334 MDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPL 393

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +   K  + A+     MV  G  P I TYN ++ +  + G  ++  ++ +++  +GC
Sbjct: 394 LHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P   +Y  +I GL    ++ +A K L+EM  KG+K  ++ Y+     LSR G+
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGK 507



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 23/368 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   +  TYN ++S   +  +  + + +L+ M       + T+   +     + + K+A+
Sbjct: 175 GAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSP--DVVTYNTILRTLCDSGKLKEAM 232

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
            + +   + +    V T   L+E   +     +A  L D+++ +   P++ TY VL+ G 
Sbjct: 233 EVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGI 292

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   L EA R  N M   G +P+V+ HNI+L  +   G+  DA K    M  KG SP+V
Sbjct: 293 CKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSV 352

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            ++ I+I   C++                    N+  Y  L+      ++M+   + L  
Sbjct: 353 VTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDI 412

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  RGC PD +TYN L+  +      D AV I  ++   G  P + TYN ++    + G 
Sbjct: 413 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGK 472

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   K+ DEM  +G  PD  +Y+ L+GGL  + +  EA  +  ++ E G+K   + YN 
Sbjct: 473 TDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNS 532

Query: 579 FAADLSRA 586
               L +A
Sbjct: 533 IMLGLCKA 540



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 23/260 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++   T L+ G C+     +A RV   + D G  PDV+ +N+++ G  K G+   A++L
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQL 202

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
            + M     SP+V +Y  ++   C                      +   YT LI     
Sbjct: 203 LDRMSV---SPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +     LL EM ++GC PD +TYN LI  +  +   DEA+R    M   G +P + T
Sbjct: 260 ESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT 319

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +N+I++S   TG +    K   EMIR+GC P   ++ +LI  L  +   G A   LE+M 
Sbjct: 320 HNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMP 379

Query: 566 EKGMKAPVLDYNKFAADLSR 585
           + G     L YN     L +
Sbjct: 380 QHGCTPNSLSYNPLLHALCK 399



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 57/390 (14%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKER 295
           D+   + +  TYN+++  L  + + +  + +L+ +M  +    + T+ I + A       
Sbjct: 204 DRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGV 263

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            +A+ + + M     K  V T N L+  + +  +L +  + L     +   PN+ T+ ++
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNII 323

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L   C     M+A +   EMI KG  P VV  NI++  L + G    AI + E M   G 
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGC 383

Query: 415 SPNVRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           +PN  SY                     IM+ + C  +   Y  L+T      ++D+  +
Sbjct: 384 TPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 443

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L ++  +GC P  +TYN +I  +      D+A+++  EM   G KP I TY+ ++    
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLS 503

Query: 515 QTGNY-----------EMGRK------------------------VWDEMIRRGCCPDDN 539
           + G             EMG K                            M+ RGC P + 
Sbjct: 504 REGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTET 563

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           SY +LI GL  +  + EA + L E+  +G+
Sbjct: 564 SYMILIEGLAYEGLAKEALELLNELCSRGV 593



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  T+N ++  +    ++      L EM  KG   S+ TF I +N         +A
Sbjct: 312 GCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRA 371

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           + + E M ++       + N LL  L + K  + A    D +  R   P++ TY  LL  
Sbjct: 372 IDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTA 431

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  + N++  KG  P ++ +N +++GL K+GK  DAIKL + MK KG  P+
Sbjct: 432 LCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPD 491

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+                L+ G     ++D       ++EE G  P+ +TYN+++  
Sbjct: 492 IITYST---------------LVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLG 536

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   +    A+     MV  G KPT  +Y ++++     G  +   ++ +E+  RG    
Sbjct: 537 LCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKK 596

Query: 538 DNSYTVLI 545
            ++  V++
Sbjct: 597 SSAEQVVV 604


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 187/420 (44%), Gaps = 54/420 (12%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           I  +  LV  +L+R  +    A  FF      P + H + +++  + I  R R F T+  
Sbjct: 54  IQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWF 113

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++  M    L  S  TF I    +AA  +  +AV +F  M++Y     + + N +L+ L 
Sbjct: 114 LVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLC 173

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +SK  + A  LF  LK +F  +  +Y +++ GWC +K   +A  +  EM+++G  P++  
Sbjct: 174 KSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTT 233

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +NIML G  + G+ ++A   F  MK +                C  +   YT +I G G 
Sbjct: 234 YNIMLNGYFRAGQTNEAWGFFLEMKKRK---------------CDIDVVTYTSVIHGLGV 278

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF------ 499
              +    ++  +M + G  P   T+NALI+++  +   + A+ I++EMV+ G+      
Sbjct: 279 VGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSIT 338

Query: 500 -----------------------------KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
                                        +P + TYN++++ +   G  E G  ++ +M 
Sbjct: 339 YNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMG 398

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGE---AYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
              C P+ ++Y +LI  +  +  S     A K L EM+++G     L +N+    L   G
Sbjct: 399 NGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTG 458



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 161/330 (48%), Gaps = 25/330 (7%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S N ++DVL +   ++R    +  +   K  F  +  +YN +++     ++    + ML+
Sbjct: 164 SFNTILDVLCK---SKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLK 220

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EM E+GL  ++ T+ I +N +  A +  +A   F  M K K    V T   ++  LG   
Sbjct: 221 EMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVG 280

Query: 329 LPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
             K A+ +F+++ K    P++ T+  L+   C+  ++  A  ++ EM+ +G+ P+ + +N
Sbjct: 281 EIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYN 340

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           +++ GL  +G+   A++L E M+     PNV++Y I+I  FC                  
Sbjct: 341 LVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAG--------------- 385

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE---AVRIYKEMVRSGFKPTIH 504
            ++   DL ++M    C P+  TYN LI  M ++K  D    A ++  EMV  GF P   
Sbjct: 386 EIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKL 445

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           T+N ++     TGN +  +++    ++ GC
Sbjct: 446 TFNRVLDGLLLTGNQDFAKEILS--LQGGC 473



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 5/184 (2%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           K G   +  T+N+++ IL +    E  + + EEM ++G +    T+ + +       E +
Sbjct: 294 KDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQ 353

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
           +A+ + E M     +  V T N L+     +   ++   LF K+ +    PNL TY +L+
Sbjct: 354 RAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILI 413

Query: 356 GGWCRVKN---LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
                 KN   L+ AG++  EM+D+GF P  +  N +L+GLL  G +  A ++  +    
Sbjct: 414 NSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGGC 473

Query: 413 GPSP 416
           G  P
Sbjct: 474 GRLP 477


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 197/430 (45%), Gaps = 32/430 (7%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDE-----CGINL-SHNLVVDVLERFRHARRPAFRFFCW 234
           +E VCK         + ME VLDE     C  N+ ++N++++ +   R  R    R F  
Sbjct: 187 LEAVCKST----GFGQAME-VLDEMRAKGCTPNIVTYNVIINGM--CREGRVDDAREFLN 239

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAK 293
                GF  ++ +Y +++  L  A+++E +  +  EM EK  +  E TF + +  F    
Sbjct: 240 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 299

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYT 352
             ++A+ + E M+ +   A     N ++  + +     +A Q L +   +  +P+  +YT
Sbjct: 300 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 359

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            +L G CR +   +A  +  EM+ K   P+ V  N  +  L + G    A  L E M   
Sbjct: 360 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEH 419

Query: 413 GPSPNVRSYTIMIWKFC-----------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           G   N+ +Y  ++  FC                 K N   YT L+TG  N  R+D   +L
Sbjct: 420 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAEL 479

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM ++ C P+ +T+N L+     + + DEA+ + ++M+  G  P + TYN ++    +
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITK 539

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
             N E   ++   ++  G  PD  +Y+ +IG L  +DR  EA K    + + GM+   + 
Sbjct: 540 DCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVI 599

Query: 576 YNKFAADLSR 585
           YNK    L +
Sbjct: 600 YNKILLALCK 609



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 16/257 (6%)

Query: 332 EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           EA  L D + HR   P++ TYTVLL   C+     +A  V +EM  KG  P++V +N+++
Sbjct: 163 EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVII 222

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
            G+ + G+  DA +    + + G  P+  SYT ++   C                 +R +
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA---------------KRWE 267

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            V +L  EM E+ C P+ +T++ L++      M + A+++ ++M   G        N+++
Sbjct: 268 DVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 327

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            +  + G  +   +  + M   GC PD  SYT ++ GL   +R  +A + L+EM+ K   
Sbjct: 328 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 571 APVLDYNKFAADLSRAG 587
              + +N F   L + G
Sbjct: 388 PNEVTFNTFICILCQKG 404



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 157/346 (45%), Gaps = 25/346 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AF+F    G   G + ++ +Y +++  L RA ++E    +L+EM  K     E TF   +
Sbjct: 339 AFQFLNNMGSY-GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 397

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                    ++A  + E M+++  +  + T N L+           A  LF  +  +  P
Sbjct: 398 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--P 455

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  TYT LL G C  + L  A  +  EM+ K   P+VV  N+++    + G   +AI+L 
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 407 EVMKAKGPSPNVRSYTIM---IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           E M   G +PN+ +Y  +   I K C    A+                  +LL  +   G
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITKDCNSEEAL------------------ELLHGLVSNG 557

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +TY+++I ++  +   +EA++++  +   G +P    YN I+ +  +  N +   
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +  M+  GC P++ +Y  LI GL ++D   E    L E+  +G+
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L EA R+ +    +G  PDV     ++  L + G+ SDA ++    +  G + +V +Y 
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 423 IMIWKFCK-----------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            ++  +C+                  +A  YT +I G  +R R+     LL +M  RGC 
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  +TY  L++ +       +A+ +  EM   G  P I TYN+I+    + G  +  R+ 
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            + +   G  PD  SYT ++ GL +  R  +  +   EM+EK      + ++       R
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 586 AG 587
            G
Sbjct: 298 GG 299



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N  L  L+     ++A +L +   ++G +P+V   T +I   C++               
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +   Y  L+ G+    ++D    L+  M      PD  TY  +I+ +  +    E
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGE 163

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+ +  +M+  G +P++ TY +++++  ++  +    +V DEM  +GC P+  +Y V+I 
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIIN 223

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G+  + R  +A ++L  +   G +   + Y      L  A R   ++EL  +M
Sbjct: 224 GMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM 276


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 178/382 (46%), Gaps = 30/382 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288
           F+     G KP    N+ TY +++  L  A++ E   +  +E      L + ++   +  
Sbjct: 322 FKLLSSYGCKP----NAATYTTIIQGLYDAQRMEEAKAFFDEA-----LDVISYTTVIKG 372

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPN 347
            A +K   +A  +FE +        V     +++ L ++   ++    F+ +      P 
Sbjct: 373 LADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPT 432

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
            TTYTV++ G C+ + L +A +V+ +M+ KG  PD + +  +++G  K  K  +A KL +
Sbjct: 433 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 492

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRR 447
           VM  KGP P   +Y  ++  FCK +                      ++T L++ + ++ 
Sbjct: 493 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKG 552

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R +  Y +L EM  RGC PD + Y +LI L+       EA  ++  M+  G  P   TY 
Sbjct: 553 RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYG 612

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            I++++ + GN E   ++ + M + G  PD  +Y  L+ G +  +R  +A+   + M+  
Sbjct: 613 TIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS 672

Query: 568 GMKAPVLDYNKFAADLSRAGRS 589
           G+K   + +N     L + G++
Sbjct: 673 GIKPNAVTFNVLMHGLFKDGKT 694



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 171/383 (44%), Gaps = 26/383 (6%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVA 300
           A +   YNS+M    +  + +  + +L +M E      ++T+ I +  F+ A     A+ 
Sbjct: 261 ATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALE 320

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           +F+L++ Y  K    T   +++ L  ++  +EA+  FD+       ++ +YT ++ G   
Sbjct: 321 LFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE-----ALDVISYTTVIKGLAD 375

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            K + EA  ++ ++   G  P+VVA+  +++GLLK G+  D +K FE M      P   +
Sbjct: 376 SKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTT 435

Query: 421 YTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           YT+                    M+ K C  +   YT LI GF    +MD    LL  M 
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G  P  +TY +++       M +EA  +  +M   G +P +  +  ++  Y   G  E
Sbjct: 496 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 555

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              +V  EM  RGC PD   YT LI  L S  R  EA    + M+EKG     L Y    
Sbjct: 556 EAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII 615

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
            + S+ G      E+ + M  SG
Sbjct: 616 QNFSKIGNVEAAGEILELMAKSG 638



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 25/386 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ TY +++    +A + +    +L+ M  KG   +  T+   ++ F       +A
Sbjct: 463 GCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA 522

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +   M +   + G+     LL   L + +  +  Q+L +       P++  YT L+  
Sbjct: 523 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 582

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
                 + EA  V++ MI+KG  PD + +  +++   KIG    A ++ E+M   G  P+
Sbjct: 583 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPD 642

Query: 418 VRSYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y                      M+    K NA  +  L+ G     + D  + L K
Sbjct: 643 CFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFK 702

Query: 458 EMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           EM E+   PP  ++Y  LI  +       EA   ++EM+  G  P  HTY  ++ S  + 
Sbjct: 703 EMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKA 762

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G     +K+ ++M++ G  PD  +Y+ LI GLI       A+   +EM+++G     + Y
Sbjct: 763 GRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTY 822

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFS 602
                    AGR+  LD  A K  FS
Sbjct: 823 KVLRRGFRAAGRA--LDLEAVKQHFS 846



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 153/346 (44%), Gaps = 26/346 (7%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N +++ L +AR+ +  + +  EM   G   ++ ++   ++  A+  +  +A   F  M  
Sbjct: 24  NIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID 83

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367
              +  V     L+    ++  P+   +L ++   RF P++  YT ++ G+C+  +L   
Sbjct: 84  NGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTG 143

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
            ++  EM+  G  PD  A+ ++++ L K+G+  +A +LFE M+  G              
Sbjct: 144 FKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG-------------- 189

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP-----DGLTYNALIKLMKIQK 482
            C  +   +  LI    N  ++D   +L +EM ERG  P     D L + AL K  K+  
Sbjct: 190 -CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIF-ALCKAGKV-- 245

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             DEA  IY+ +V      +   YN +M  Y + G  + G K+  +M+     PD  +Y 
Sbjct: 246 --DEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYN 303

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +L+ G    +R  +A +  + +   G K     Y      L  A R
Sbjct: 304 ILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQR 349



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 144/329 (43%), Gaps = 18/329 (5%)

Query: 262 ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           E  +  L+EM   GL+  +    I +N    A++  KA+ +F  M     +  + + N +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 321 LENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +  L       EA   F+  + +   P++  +T L+ G+C+         + N+ + K F
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQAL-KRF 120

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +PDV  +  ++ G  K G      K+ E M A G  P+  +Y ++I   CK         
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLG------- 173

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                   R+D  Y+L + M + GC  D +T+  LI+ +      DEA  +Y+EM+  G+
Sbjct: 174 --------RVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGY 225

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P +   + ++ +  + G  +   +++  ++ +       +Y  L+ G     R  +  K
Sbjct: 226 EPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLK 285

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            L +M+E      +  YN   A  SRA R
Sbjct: 286 LLLQMVECDNFPDIQTYNILVAGFSRANR 314



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 102/235 (43%), Gaps = 19/235 (8%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA     EM   G  PDVV  NI+L GL K  K   AI+LF  M + G  P + SY    
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT-- 60

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        +I+G  +  +MD  Y     M + GC PD + +  LI        P 
Sbjct: 61  -------------VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQ 107

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
               +  + ++  F+P +  Y  ++  Y + G+ + G K+ +EM+  GC PD  +Y VLI
Sbjct: 108 VGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLI 166

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             L    R  EAY+  E M + G     + +      LS  G+   LDE  +  R
Sbjct: 167 DPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGK---LDEACELYR 218



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 18/204 (8%)

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +A+   + M   G  P+V +  I++   CK                R++D   +L  EM 
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKA---------------RKIDKAIELFLEMP 47

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             GC P  ++YN +I  L  I KM DEA + +  M+ +G +P +  +  ++  + + G  
Sbjct: 48  SMGCEPTIVSYNTVISGLASIDKM-DEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP 106

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           ++G  + ++ ++R   PD   YT +I G          +K LEEML  G       Y   
Sbjct: 107 QVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVL 165

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
              L + GR     EL ++MR SG
Sbjct: 166 IDPLCKLGRVDEAYELFERMRKSG 189



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%)

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +EA+   KEM  +G  P +   N+++    +    +   +++ EM   GC P   SY  +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           I GL S D+  EAYK+   M++ G +  V+ +        +AG+  V
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 108


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 176/384 (45%), Gaps = 26/384 (6%)

Query: 202 LDECGINLSHNLVVDVLERFRHAR---------RPAFRFFCWAGDKPGFAHNSRTYNSMM 252
           LDE  + +S  LV +VL+    ++         +  ++FF W+G    + H   +Y+ +M
Sbjct: 99  LDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKFFIWSGRIENYRHTVNSYHIIM 158

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
            I     +F+ M  +L+EM EKG  ++  TF I +     A   K+ V  F     + F+
Sbjct: 159 KIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFR 218

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               + N +L  L   K  K    ++D+ L    +P++ TY VLL   C++  L +  R+
Sbjct: 219 PYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRL 278

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
            +EM  KGF PD   +NI+L  L K  K   A+ L   M+  G  PNV  +T        
Sbjct: 279 LDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTT------- 331

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   LI G      +D       E+   GC PD + Y  +I         ++A   
Sbjct: 332 --------LINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAF 383

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + EM+  G  P + TYN +++ +   G ++    +  EM  RGC P+   Y+ L+  L +
Sbjct: 384 FDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRN 443

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVL 574
             + GEA+K +++M+E G  A ++
Sbjct: 444 AGKLGEAHKVIKQMVENGQYAHLM 467



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
           F+P   ++N +L GL+ + +      +++ M     SP++ +Y ++++  CK        
Sbjct: 217 FRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLG------ 270

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
                    ++D  + LL EM  +G  PD  TYN L+ ++     P  A+ +   M   G
Sbjct: 271 ---------KLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVG 321

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           F P +  +  ++    + GN +  +  +DE+   GC PD   YTV+I       +  +A 
Sbjct: 322 FGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKAR 381

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + +EM+ KG    V  YN         G+
Sbjct: 382 AFFDEMIMKGQLPNVFTYNSMIRGFCMVGK 411


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 193/417 (46%), Gaps = 19/417 (4%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           +D   SL   M++   +  I L +N+ +D   +       A++FF       G   +  T
Sbjct: 112 VDAALSLLDEMKSNTFDADIVL-YNVCIDCFGKVGKVDM-AWKFF-HEMKANGLVPDDVT 168

Query: 248 YNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y SMM +L +A + +  V + E+M + + +     +   +  + +A +  +A ++ E   
Sbjct: 169 YTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQR 228

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
                  V   NC+L  LG+     +A  +F+++K    PNL TY +++G  C+  N+  
Sbjct: 229 AKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEA 288

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A +V + M + G  P+V   NIM++ L K  K  +A  +FE M                +
Sbjct: 289 AFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMD---------------Y 333

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           K C  + A +  LI G G + R+D  Y + + M +    P+ + Y +LI+        ++
Sbjct: 334 KVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKED 393

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
             ++YKEM+RSG  P +   N  M   F+ G  E GR +++E+  RG  PD  SY++LI 
Sbjct: 394 GHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIH 453

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L+    + E Y+    M ++G       YN       ++G+     +L ++M+  G
Sbjct: 454 SLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMG 510



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 159/365 (43%), Gaps = 23/365 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG----LLSMETFKIAMNAFAAAKERKKAV 299
           N   Y S++    +  + E    M +EM   G    L+ + T+   M+    A E +K  
Sbjct: 374 NVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTY---MDCVFKAGETEKGR 430

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+FE +    F     + + L+ +L ++   +E   L+  +K +    +   Y  ++ G+
Sbjct: 431 ALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGF 490

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + +A ++  EM   G  P VV +  +++GL KI +  +A  LFE  K+ G     
Sbjct: 491 CKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNG----- 545

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                      + N  +Y+ LI GFG   R+D  Y +++EM ++G  P+  T+N L+  +
Sbjct: 546 ----------IELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGL 595

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +  +EA+  ++ M      P   TY +++    +   +      W EM ++G  P+ 
Sbjct: 596 VKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNT 655

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT +I GL       +A    E     G       YN     LS A R+    +L ++
Sbjct: 656 ITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEE 715

Query: 599 MRFSG 603
            R  G
Sbjct: 716 TRLKG 720



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 17/231 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY S++  L +  + +    + EE    G+ L+   +   ++ F       +A  + E M
Sbjct: 517 TYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEM 576

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      V T NCLL+ L +++   EA + F  +K  + TPN  TY +L+ G C+V+  
Sbjct: 577 MQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKF 636

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A   W EM  +G KP+ + +  M+ GL K G  + A  LFE  +A G  P+  SY  M
Sbjct: 637 NKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAM 696

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           I      N              R +D  Y L +E   +GC     T  AL+
Sbjct: 697 IEGLSIAN--------------RALD-AYQLFEETRLKGCSIHTKTCVALL 732



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 23/283 (8%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           F P   T   L+    + + L+EA  +   M    F+P   A+  ++  L ++G+    +
Sbjct: 22  FGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRML 81

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
            LF  M+  G   NV   T +I  F ++                    +  +Y   I  F
Sbjct: 82  ALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCF 141

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G   ++D+ +    EM+  G  PD +TY +++ ++      DEAV I+++M ++   P  
Sbjct: 142 GKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCA 201

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           + YN ++  Y   G ++    + +    +GC P   +Y  ++  L  + ++ +A +  EE
Sbjct: 202 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEE 261

Query: 564 MLEKGMKAPVL-DYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           M    M  P L  YN     L +AG      ++   M+ +G F
Sbjct: 262 MKRDAM--PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLF 302



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 6/202 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N   Y+S++   G+  + +    ++EEM +KGL  ++ T+   ++    A+E  +A
Sbjct: 545 GIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEA 604

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           +  F+ M   K      T   L+  L + +   +A + + ++ K    PN  TYT ++ G
Sbjct: 605 LVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISG 664

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +  N+ +A  ++      G  PD  ++N M+EGL    +  DA +LFE  + KG S +
Sbjct: 665 LAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIH 724

Query: 418 VRSYTIMIWKF----CKQNAAV 435
            ++   ++       C + AA+
Sbjct: 725 TKTCVALLDALHKAECLEQAAI 746


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 196/430 (45%), Gaps = 32/430 (7%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDE-----CGINL-SHNLVVDVLERFRHARRPAFRFFCW 234
           +E VCK         + ME VLDE     C  N+ ++N++++ +   R  R    R F  
Sbjct: 187 LEAVCKST----GFGQAME-VLDEMRAKGCTPNIVTYNVIINGM--CREGRVDDAREFLN 239

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAK 293
                GF  ++ +Y +++  L  A+++E +  +  EM EK  +  E TF + +  F    
Sbjct: 240 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 299

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYT 352
             ++A+ + E M+ +   A     N ++  + +     +A Q L +   +  +P+  +YT
Sbjct: 300 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 359

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            +L G CR +   +A  +  EM+ K   P+ V  N  +  L + G    A  L E M   
Sbjct: 360 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEH 419

Query: 413 GPSPNVRSYTIMIWKFC-----------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           G   N+ +Y  ++  FC                 K N   YT L+TG  N  R+D   +L
Sbjct: 420 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAEL 479

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L EM ++ C P+ +T+N L+     + + DEA+ + ++M+  G  P + TYN ++     
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITN 539

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
             N E   ++   ++  G  PD  +Y+ +IG L  +DR  EA K    + + GM+   + 
Sbjct: 540 DCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVI 599

Query: 576 YNKFAADLSR 585
           YNK    L +
Sbjct: 600 YNKILLALCK 609



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 156/343 (45%), Gaps = 19/343 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AF+F    G   G + ++ +Y +++  L RA ++E    +L+EM  K     E TF   +
Sbjct: 339 AFQFLNNMGSY-GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 397

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                    ++A  + E M+++  +  + T N L+           A  LF  +  +  P
Sbjct: 398 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--P 455

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  TYT LL G C  + L  A  +  EM+ K   P+VV  N+++    + G   +AI+L 
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           E M   G +PN+ +Y                 L+ G  N    +   +LL  +   G  P
Sbjct: 516 EQMMEHGCTPNLITYNT---------------LLDGITNDCNSEEALELLHGLVSNGVSP 560

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TY+++I ++  +   +EA++++  +   G +P    YN I+ +  +  N +     +
Sbjct: 561 DIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFF 620

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             M+  GC P++ +Y  LI GL ++D   E    L E+  +G+
Sbjct: 621 AYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 16/257 (6%)

Query: 332 EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           EA  L D + HR   P++ TYTVLL   C+     +A  V +EM  KG  P++V +N+++
Sbjct: 163 EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVII 222

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
            G+ + G+  DA +    + + G  P+  SYT ++   C                 +R +
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA---------------KRWE 267

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            V +L  EM E+ C P+ +T++ L++      M + A+++ ++M   G        N+++
Sbjct: 268 DVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 327

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            +  + G  +   +  + M   GC PD  SYT ++ GL   +R  +A + L+EM+ K   
Sbjct: 328 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 571 APVLDYNKFAADLSRAG 587
              + +N F   L + G
Sbjct: 388 PNEVTFNTFICILCQKG 404



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L EA R+ +    +G  PDV     ++  L + G+ SDA ++    +  G + +V +Y 
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 423 IMIWKFCK-----------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            ++  +C+                  +A  YT +I G  +R R+     LL +M  RGC 
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  +TY  L++ +       +A+ +  EM   G  P I TYN+I+    + G  +  R+ 
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            + +   G  PD  SYT ++ GL +  R  +  +   EM+EK      + ++       R
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 586 AG 587
            G
Sbjct: 298 GG 299



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N  L  L+     ++A +L +   ++G +P+V   T +I   C++               
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +   Y  L+ G+    ++D    L+  M      PD  TY  +I+ +  +    E
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGE 163

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+ +  +M+  G +P++ TY +++++  ++  +    +V DEM  +GC P+  +Y V+I 
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIIN 223

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G+  + R  +A ++L  +   G +   + Y      L  A R   ++EL  +M
Sbjct: 224 GMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM 276


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 177/369 (47%), Gaps = 23/369 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N +TY +++S L R  + E  + +  +M ++GL+ +  T+   +N         
Sbjct: 331 KRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFS 390

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A+ IF  M  +   A   T N +++ L      ++A +LF+K LK    P + TY  L+
Sbjct: 391 TALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+    N+  A R+ + M + G +PD   +N ++ G  K GK   A   F+ M   G +
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 510

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  SYT                LI G     ++DI   LLK MEE GC P+  +YNA+I
Sbjct: 511 PNPVSYT---------------ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +  +    EA +I  +MV  G  P + TY  ++    + G  +   K++ +M +R C 
Sbjct: 556 NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 615

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDE 594
           P+  +Y+ LI GL  + ++ EA    E M E G + P LD Y+   + L R GR Y  ++
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEA----ERMSEIGCE-PTLDTYSTLVSGLCRKGRFYEAEQ 670

Query: 595 LAQKMRFSG 603
           L + M+  G
Sbjct: 671 LVKDMKERG 679



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 185/419 (44%), Gaps = 52/419 (12%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET--------------------MVSM 267
             +FF W   +P + HN   + SM++ L R R F                      +   
Sbjct: 91  VIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADF 150

Query: 268 LEEMGEKG----LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           L E+   G    L S  T  I +  F   +    A  +++ M     +  + T N L+  
Sbjct: 151 LNEISGMGFGFSLYSCNTLLIQLAKFEMVE---GARNLYKQMLNSGIQPSLLTFNTLINI 207

Query: 324 LGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +    +EA+L+  ++ ++  +P++ TYT L+ G CR +NL  A  V++ M+ +G  P+
Sbjct: 208 LSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPN 267

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------------- 428
            V ++ ++ GL   G+  +A+ + E M  KG  P V +YT+ I                 
Sbjct: 268 SVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVA 327

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                 C+ N   YT LI+G     ++++   L  +M + G  P+ +TYNALI  + +  
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A++I+  M   G      TYN I+K     G+ E    ++++M++ G  P   +Y 
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQ 597
            LI G +++     A + L+ M E G +     YN+  +  S+ G+    S+   E+ +
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVE 506



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 159/354 (44%), Gaps = 17/354 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   NS TY+++++ L    + +  + MLEEM EKG+  ++ T+ + + A  A +  +
Sbjct: 261 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A+ +   M K   +  V T   L+  L R  KL     L    LK    PN  TY  L+
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C       A ++++ M   G   +   +N +++GL   G    A+ LFE M   GP 
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P V                 Y  LI G+  +  ++    LL  M+E GC PD  TYN L+
Sbjct: 441 PTV---------------VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 485

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    + A   ++EMV  G  P   +Y  ++  + + G  ++   +   M   GC 
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           P+  SY  +I GL  ++R  EA K  ++M+E+G+   V+ Y      L R GR+
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRT 599



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 183/427 (42%), Gaps = 56/427 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A + F W       A N++TYN ++  L      E  + + E+M + G L ++ T+   +
Sbjct: 392 ALKIFHWMEGHGSLA-NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL------ 340
           N +        A  + +LM +   +    T N L+    +    + A   F ++      
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 510

Query: 341 ------------------------------KHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
                                         +    PN+ +Y  ++ G  +     EA ++
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 570

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
            ++M+++G  P+V+ +  +++GL + G+   A K+F  M+ +   PN+ +Y+ +I+  C+
Sbjct: 571 CDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630

Query: 431 QNAA----------------VYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNA 473
           +  A                 Y+ L++G   + R      L+K+M+ERG CP   + Y+ 
Sbjct: 631 EGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSL 690

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI   K  ++ D A++I+  +   GF+  +  Y  ++ +  + G  E  + ++D M+ + 
Sbjct: 691 LIAHCKNLEV-DHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 749

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
              D+  +TVL+ GL+ +       K L  M  K     +  Y     +LSR G+S   +
Sbjct: 750 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESE 809

Query: 594 ELAQKMR 600
            LA K++
Sbjct: 810 PLADKLK 816



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 130/317 (41%), Gaps = 34/317 (10%)

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A  K+ +  +  F  ++K  F      +NC +  L R        L+ D++   F P   
Sbjct: 83  AVHKDTESVIQFFYWISKRPFYK--HNMNCFISMLNR--------LVRDRV---FAPA-D 128

Query: 350 TYTVLLGGWCRVKNLMEAGRV---WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
              +L+   CR  N  E  RV    NE+   GF   + + N +L  L K      A  L+
Sbjct: 129 HIRILMIKACR--NEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 186

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G  P++ ++  +I    K+            G  R  +++   L ++ +    P
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKK------------GKVREAELI---LSQIFQYDLSP 231

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D  TY +LI      +  D A  ++  MV+ G  P   TY+ ++      G  +    + 
Sbjct: 232 DVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDML 291

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +EMI +G  P   +YT+ I  L + +   EA + +  M ++G +  V  Y    + LSR 
Sbjct: 292 EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351

Query: 587 GRSYVLDELAQKMRFSG 603
           G+  V   L  KM   G
Sbjct: 352 GKLEVAIGLYHKMLKEG 368


>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa]
 gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 208/457 (45%), Gaps = 27/457 (5%)

Query: 157 ECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSL--DRNMEAVLDECGINLSHNLV 214
           E    N+  + +   ++S+ D ++I    +++ E+ +     ++E+ L   GI  +H++V
Sbjct: 2   EAAAVNTNRKTSKPQFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIV 61

Query: 215 VDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
            +VL+        A  FF WAG        S  +N M+ +LG+   +E M   +  M ++
Sbjct: 62  HEVLKLCHENATSAIAFFRWAGRTHKLT--SYAWNLMVDLLGKNWMYEPMWDAVRTMKQE 119

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
            +LSM TF     ++  A +  +A+  F +M+KY  +  V  +N LL  +   +      
Sbjct: 120 DMLSMATFVSVFGSYCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKA 179

Query: 335 L-LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPD-VVAHNIMLE 391
           L  FDK+K +  PN  T+ +LL GW +  ++ +A   + EM+ K G+ P+ + A++  L 
Sbjct: 180 LEFFDKIKLKIPPNADTFAILLEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLT 239

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA----------------- 434
            L++  +  +A+K   VMK K   P ++ ++  +    KQN +                 
Sbjct: 240 TLVRGSQADEAVKFLRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGSGLLP 299

Query: 435 ---VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
              +Y  +I    N   +D  + LL EM   G  PD LT+N + + +   K      + +
Sbjct: 300 NLIMYNAMIGLHCNNNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFF 359

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM+++   PT    +  + +    G+ EM  ++W+ ++     P D S   L+ G  + 
Sbjct: 360 YEMIKNESPPTHFDCSAAIMTLIDGGDPEMAIEIWNYIVENHVLPLDGSANALLIGFCNL 419

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            R  +  ++ E+ML++ +        K      + GR
Sbjct: 420 GRMSQVRRFAEDMLDRRINIYESTMKKLKDSFDKTGR 456


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 177/359 (49%), Gaps = 22/359 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N+  YN++++ L +    E    +LEEM  KG      T+   ++      +  +A
Sbjct: 75  GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEA 134

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF---DKLKHRFTPNLTTYTVLL 355
              F+ M    +   V   N LL+ L +     EA  LF   D    +  P+L TY  L+
Sbjct: 135 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLI 194

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+CRV+   EA +++ ++I KG+ PD V +N +L GL +     +A ++F+ M   G +
Sbjct: 195 DGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCA 254

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  +Y+I++   C+             GN  R     +L +EM E+   PD L  NA+I
Sbjct: 255 PNGATYSIVLSGHCR------------VGNMAR---CLELYEEMTEKRFSPDVLLCNAVI 299

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            ++   K  D+A ++ +EM + G  P + TYN+++    +T   +   +++  M+  GC 
Sbjct: 300 DMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCA 359

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
           PD  SY+V++ GL   ++  +A    + M+E+ +   V+ +N     L +AG+   LDE
Sbjct: 360 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK---LDE 415



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 19/368 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  ++ TYNS++  L R    +    M ++M + G   +  T+ I ++         + 
Sbjct: 217 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARC 276

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + ++E M + +F   V   N +++ L ++K   +A  + +++ K    P++ TY +LL G
Sbjct: 277 LELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 336

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + +A  +++ M+D G  PD+V+++++L GL K  K  DA  LF+ M  +   P+
Sbjct: 337 LCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPD 396

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V ++ I++   CK                 ++D   DLL  M E    PDG+T   L+  
Sbjct: 397 VVTFNILMDGLCKAG---------------KLDEAKDLLDVMSEHNVLPDGVTCTTLMHG 441

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG--CC 535
           +   K  DEAVR+++ MV  G    +  +N+++    + G        +  M++      
Sbjct: 442 LCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFS 501

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PD  +YT L+  LI   R  +A  Y ++M   G     + YN     L + GR    D L
Sbjct: 502 PDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRL 561

Query: 596 AQKMRFSG 603
            Q M+  G
Sbjct: 562 TQAMKEKG 569



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 196/426 (46%), Gaps = 37/426 (8%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
           IER  K+++E+ S     +        N+++N ++  L R       A +FF     + G
Sbjct: 96  IERAYKLLEEMASKGYEPD--------NITYNTILSGLCRMGKVSE-AKQFFDSMPSR-G 145

Query: 241 FAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           ++ +   YN ++  L   G+  +   +   ++    K    + T+   ++ F   ++  +
Sbjct: 146 YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDE 205

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A+ +F+ +    +     T N +L  L R     EA+ +F K+      PN  TY+++L 
Sbjct: 206 AMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLS 265

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CRV N+     ++ EM +K F PDV+  N +++ L K  K  DA K+ E M   G  P
Sbjct: 266 GHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVP 325

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V +Y I++   CK N                +D  ++L   M + GC PD ++Y+ ++ 
Sbjct: 326 DVVTYNILLDGLCKTNL---------------VDKAHELFSTMVDNGCAPDIVSYSVVLN 370

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L K  K+ D  V ++  M+     P + T+N++M    + G  +  + + D M      
Sbjct: 371 GLCKTNKVHDARV-LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVL 429

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PD  + T L+ GL    R+ EA +  + M+EKG  A VL +N   A L R G+      L
Sbjct: 430 PDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGK------L 483

Query: 596 AQKMRF 601
           AQ + F
Sbjct: 484 AQALLF 489



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 17/262 (6%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           F P++ TY+ ++ G C+   + EA  +  EM +KG  PDV  + I+++ L + GK  +A 
Sbjct: 6   FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +LF  M  +G               C  N   Y  LI G      ++  Y LL+EM  +G
Sbjct: 66  ELFHKMIERG---------------CSANTVAYNALINGLCKDENIERAYKLLEEMASKG 110

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +TYN ++  +       EA + +  M   G+ P +  YN ++ + ++ G      
Sbjct: 111 YEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAW 170

Query: 524 KVWD--EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            ++   +M  R   PD  +Y  LI G    +++ EA K  ++++ KG     + YN    
Sbjct: 171 GLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILL 230

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
            L+R       +E+ +KM  SG
Sbjct: 231 GLARKSNMDEAEEMFKKMVDSG 252



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 127/266 (47%), Gaps = 19/266 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TYN ++  L +    +    +   M + G    + ++ + +N      +  
Sbjct: 320 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 379

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
            A  +F+ M + K    V T N L++ L ++    EA+ L D + +H   P+  T T L+
Sbjct: 380 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM 439

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKGP 414
            G CR K   EA R++  M++KG   DV+ HNI+L GL + GK + A+  F+ M K+ G 
Sbjct: 440 HGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGE 499

Query: 415 -SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            SP+V +YT ++      NA +            R+D   D  ++M   GC PD + YN 
Sbjct: 500 FSPDVVTYTTLV------NALI---------EAGRVDQAVDYFQQMTGSGCAPDYVAYNT 544

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGF 499
           L+  ++ Q    +A R+ + M   GF
Sbjct: 545 LMNGLRKQGRHIQADRLTQAMKEKGF 570



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 459 MEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           M E+G  PD +TY+ +I  L K  K+  EA+ + +EM   G  P + TY +I+    + G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVT-EALEMVEEMTEKGVNPDVATYTIIVDRLCRAG 59

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   +++ +MI RGC  +  +Y  LI GL   +    AYK LEEM  KG +   + YN
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 578 KFAADLSRAGR 588
              + L R G+
Sbjct: 120 TILSGLCRMGK 130



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           M  KG  P+V +Y+ +I   CK          TG     ++    ++++EM E+G  PD 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCK----------TG-----KVTEALEMVEEMTEKGVNPDV 45

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
            TY  ++  +      DEA  ++ +M+  G       YN ++    +  N E   K+ +E
Sbjct: 46  ATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEE 105

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M  +G  PD+ +Y  ++ GL    +  EA ++ + M  +G    V+ YN     L + G+
Sbjct: 106 MASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 165



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%)

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M  +G  PD  +Y+ +I GL    +  EA + +EEM EKG+   V  Y      L RAG+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 589 SYVLDELAQKM 599
               DEL  KM
Sbjct: 61  VDEADELFHKM 71


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 181/356 (50%), Gaps = 22/356 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G++ +  TYN+++    +  + +  + + +   ++G +  + T+   +N F  A +  
Sbjct: 38  KAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 97

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A  I + M        V T N L+  L ++    EA++L   +   F+PN+ TY+ L+ 
Sbjct: 98  EAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSPNVITYSTLIS 155

Query: 357 GWCR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G CR ++ + EA +++  ++ +G++P+V  +NI+++GLLK  + ++A +LF  +   G  
Sbjct: 156 GLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLE 215

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +YT+ I   CK                 R++    +LK+M+E+GC PD +++NA+I
Sbjct: 216 PDAITYTVFIDGLCKAG---------------RVEDALLMLKDMDEKGCVPDVVSHNAVI 260

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +  +K  DEA  +   M   G  P   ++N ++    + G ++     + EM++RG  
Sbjct: 261 NGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVK 320

Query: 536 PDDNSYTVLIGGLISQDRSG---EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           P   +Y +L+ GL    + G   EA    + M+EKG    V+ Y+     L +AG+
Sbjct: 321 PTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 376



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKN 363
           M K+ F     T N LL  L       +AQ L+++ +K  ++P++ TY  LL G+C+V  
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA ++++  + +GF PDVV +N ++ G  K  K  +A ++ + M ++   P+V +Y  
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 424 MIWKFCKQ-----------------NAAVYTCLITGFGNR-RRMDIVYDLLKEMEERGCP 465
           ++   CK                  N   Y+ LI+G     R +     L   + ++G  
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  TYN LI  +  +   +EA  ++  +V+ G +P   TY + +    + G  E    +
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M  +GC PD  S+  +I GL  + R  EA   L  M  KG     + +N       R
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 586 AGR 588
           AG+
Sbjct: 301 AGK 303



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 22/281 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G+     TYN ++  L +  +      +   + + GL     T+ + ++    A   +
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A+ + + M++      V + N ++  L + K   EA++L   ++ +  +PN  ++  L+
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI---GKRSDAIKLFEVMKAK 412
            G CR     +A   + EM+ +G KP VV +NI+++GL K    G+  +AI LF+ M  K
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 355

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+V                 Y+ LI G G   ++D    LL  ME +GC P+  TYN
Sbjct: 356 GRVPDV---------------VTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYN 400

Query: 473 ALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           +LI  L  ++K+ DEA+ ++  MV  G  P   TY  I+ +
Sbjct: 401 SLISGLCGLEKV-DEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 128/271 (47%), Gaps = 22/271 (8%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           ++N+++D L +       AF  F     K G   ++ TY   +  L +A + E  + ML+
Sbjct: 185 TYNILIDGLLKEDRVNE-AFELFSGL-VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 242

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           +M EKG +  + +    +N     K   +A  +   M          + N L+    R+ 
Sbjct: 243 DMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAG 302

Query: 329 LPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKN---LMEAGRVWNEMIDKGFKPDVV 384
             K+A   F + LK    P + TY +L+ G C+ +    + EA  +++ MI+KG  PDVV
Sbjct: 303 KWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVV 362

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            ++ +++GL K GK  DA +L   M+AKG  PNV  YT             Y  LI+G  
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNV--YT-------------YNSLISGLC 407

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
              ++D   +L   M E+GC PD +TY  +I
Sbjct: 408 GLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + GF P   TYN ++      G     + +++ MI+ G  PD  +Y  L+ G      
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             EA K  +  +++G    V+ YN       +A +   LDE AQ++
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK---LDE-AQRI 102


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 158/327 (48%), Gaps = 17/327 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N   YN+++  + + +       +  EM  KG+   + T+   ++ F    + K A+ +F
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLF 283

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
             M     K  V T N L+    +    KE + +FD + K    PN  TY  L+ G+C V
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K + +A  ++N M   G  PD+ +++IM+ G  KI K  +A+ LF+ M  K   P+V   
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV--- 400

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                         Y+ LI G     R+     L+ +M +RG PP+  TYN+++  +   
Sbjct: 401 ------------VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKT 448

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              D+A+ +  +    GF+P I TY++++K   Q+G  E  RKV+++++ +G   D  +Y
Sbjct: 449 HQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAY 508

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKG 568
           T++I G   +    EA   L +M + G
Sbjct: 509 TIMIQGFCVEGLFNEALALLSKMEDNG 535



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 170/396 (42%), Gaps = 40/396 (10%)

Query: 210 SHNLVVDVLERF-----RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264
           S+N V D +  F     R+   PAF F                 N ++  L +++ + T+
Sbjct: 62  SNNDVDDAVSLFNRLLRRNTTPPAFEF-----------------NKILGSLVKSKHYHTV 104

Query: 265 VSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           + + ++M  +G+  ++    I +N F        A ++F  + K  +     T   L + 
Sbjct: 105 LYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKG 164

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L      ++A L  DK+    F  +  +Y  L+ G C+V     A  +   +     +P+
Sbjct: 165 LCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           VV +N +++ + K+   ++A  LF  M +KG SP+V +Y+ +I  FC          I G
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFC----------ILG 274

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                ++    DL  +M      PD  T+N L+          E   ++  M++ G KP 
Sbjct: 275 -----KLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN +M  Y         + +++ M + G  PD  SY+++I G     +  EA    +
Sbjct: 330 FVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQ 597
           EM  K +   V+ Y+     LS++GR SY L  + Q
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 185/401 (46%), Gaps = 24/401 (5%)

Query: 223 HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLS--M 279
           H    A   F    D+       R++NS+++++ +   F   +   E  +G K  +S  +
Sbjct: 129 HLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 188

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +F + + A        +A+ +F  M   K +  V T   L++ L +     EA LL D+
Sbjct: 189 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 248

Query: 340 LK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           ++     P+  T+ VL+ G C+  +++   ++ + M  KG  P+ V +N ++ GL   GK
Sbjct: 249 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 308

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV--------------------YTC 438
              A+ L + M A    PN  +Y  +I    KQ  +V                    Y+ 
Sbjct: 309 LDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 368

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI+G     + +    L K+M E+GC P+ + Y+ALI  +  +   DEA  I  EMV  G
Sbjct: 369 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P   TY+ ++K +F+TGN +   +VW EM +  C P++  Y+VLI GL    +  EA 
Sbjct: 429 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 488

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
                ML +G++  V+ Y+     L  AG   V  +L  +M
Sbjct: 489 MMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 529



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 168/392 (42%), Gaps = 24/392 (6%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S N V++V+ +     R    + C  G K   + N  ++N ++  + +    +  + +  
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 270 EMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-GRS 327
           EM  +K    + T+   M+         +AV + + M          T N L+  L  + 
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            + +  +L+ +       PN  TY  ++ G C    L +A  + + M+     P+ V + 
Sbjct: 273 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 332

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------WK----- 427
            ++ GL+K G+  D + L   ++ +G   N  +Y+ +I               WK     
Sbjct: 333 TLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEK 392

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
            C+ N  VY+ LI G     ++D   ++L EM  +GC P+  TY++LIK         +A
Sbjct: 393 GCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKA 452

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           +R++KEM ++   P    Y++++    + G       +W  M+ RG  PD  +Y+ +I G
Sbjct: 453 IRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHG 512

Query: 548 LISQDRSGEAYKYLEEML--EKGMKAPVLDYN 577
           L +        K   EML  E   +  V+ YN
Sbjct: 513 LCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 544



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 172/401 (42%), Gaps = 28/401 (6%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG- 272
           VV V   F  +    F+    A     +     T+ S++     +  F T+  + + M  
Sbjct: 52  VVSVSRSFLQSETYIFK---SASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKR 108

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPK 331
           E+ +   + F +   A+  A   +KA+ +F  ++++++ +  V + N +L  + +  L  
Sbjct: 109 ERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFH 168

Query: 332 EAQLLFD---KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
            A   ++     K   +PN+ ++ +++   C++  +  A  V+ EM  +  +PDV  +  
Sbjct: 169 RALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCT 228

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           +++GL K  +  +A+ L + M+ +G  P+  ++ ++I   CK+                 
Sbjct: 229 LMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG 288

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              N   Y  +I G   + ++D    LL  M    C P+ +TY  LI  +  Q    + V
Sbjct: 289 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGV 348

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +   +   G     + Y+ ++   F+    E    +W +M+ +GC P+   Y+ LI GL
Sbjct: 349 HLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL 408

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             + +  EA + L EM+ KG       Y+       + G S
Sbjct: 409 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNS 449



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 157/374 (41%), Gaps = 40/374 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN++++ L    + +  VS+L+ M   K + +  T+   +N           
Sbjct: 288 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 347

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V +   + +    A     + L+  L + +  +EA  L+ K+  +   PN+  Y+ L+ G
Sbjct: 348 VHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDG 407

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR   L EA  +  EM++KG  P+   ++ +++G  K G    AI++++ M      PN
Sbjct: 408 LCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPN 467

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
              Y+++I   C                    + +   Y+ +I G  N   +++   L  
Sbjct: 468 EICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 527

Query: 458 EM--EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           EM  +E    PD +TYN L++ +  Q     A+ +   M+  G  P + T N+ + +  +
Sbjct: 528 EMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALRE 587

Query: 516 TGNYEM-GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
             N    GR+  DE++ R               L  + R   A K +E ML+K +     
Sbjct: 588 KLNPPQDGREFLDELVVR---------------LHKRQRIVGAAKIIEVMLQKFLPPNAS 632

Query: 575 DYNKFAADLSRAGR 588
            + +   +L +  +
Sbjct: 633 TWERIIPELCKPKK 646



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMV--RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           ++N+++ ++  + +   A+  Y+  V  ++   P + ++N+++K+  + G  +   +V+ 
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           EM  + C PD  +Y  L+ GL  +DR  EA   L+EM  +G     + +N     L + G
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 588 RSYVLDELAQKMRFSG 603
               + +L   M   G
Sbjct: 273 DMVRVTKLVDNMFLKG 288


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 179/404 (44%), Gaps = 27/404 (6%)

Query: 223 HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF 282
           H  +  F      G KP       TY ++++ L R ++F+++ ++L ++ + G+      
Sbjct: 77  HEAQAVFHNLTEEGHKPTLI----TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSIL 132

Query: 283 KIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
             AM NAF+ + +  +A+ IF+ M +Y  K    T N L++  G    P E+  L + + 
Sbjct: 133 LNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMG 192

Query: 342 H--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 PN  TY +L+  WC  K L EA  V ++M+  G +PDVV +N M     + G+ 
Sbjct: 193 QDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGET 252

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A +L   M+     PN R+  I+I  +CK+                    N  V+  L
Sbjct: 253 EKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSL 312

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G+ +    + V + L  MEE G  PD +T++ ++       + D    I+ +MV++G 
Sbjct: 313 IKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGI 372

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P IH Y+++ K Y + G       +   M + G   +   +T +I G  +  +   A+ 
Sbjct: 373 EPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFS 432

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             E+M E G    +  Y         A + +  +E+   M   G
Sbjct: 433 LCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERG 476



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 22/298 (7%)

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +G+ K P EAQ +F  L      P L TYT L+    R K       + +++ D G KPD
Sbjct: 71  IGKGK-PHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPD 129

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
            +  N M+      GK  +A+K+F+ MK  G               CK   + Y  LI G
Sbjct: 130 SILLNAMINAFSDSGKVDEAMKIFQKMKEYG---------------CKPTTSTYNTLIKG 174

Query: 443 FGNRRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           FG   R      LL+ M ++    P+  TYN LI+    +K  +EA  +  +MV SG +P
Sbjct: 175 FGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQP 234

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TYN + ++Y Q G  E   ++  +M      P++ +  ++I G   +    EA ++L
Sbjct: 235 DVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFL 294

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM-RFSGKFEV---SNVLARWA 615
             M E G+    + +N        A  +  +DE    M  F  K +V   S ++  W+
Sbjct: 295 YRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWS 352



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 142/345 (41%), Gaps = 60/345 (17%)

Query: 240 GFAHNSRTYNSMMSILG-RARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERK 296
           G    + TYN+++   G   R +E+M  +LE MG+   +     T+ I + A+   K+ +
Sbjct: 160 GCKPTTSTYNTLIKGFGIVGRPYESM-KLLEMMGQDENVKPNDRTYNILIQAWCTKKKLE 218

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
           +A  +   M     +  V T N +     ++   ++A+ L  K+++ +  PN  T  +++
Sbjct: 219 EAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIII 278

Query: 356 GGWCRVKNLMEAGR---------------VWNEMI--------------------DKGFK 380
            G+C+  N+ EA R               V+N +I                    + G K
Sbjct: 279 SGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIK 338

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
           PDVV  + ++      G   +  ++F  M   G  P++ +Y+I+   + +          
Sbjct: 339 PDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESL 398

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      N  ++T +I+G+    +MD  + L ++M E G  P+  TY  LI     
Sbjct: 399 LTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGE 458

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            K P +A  I   M   G  P + T  ++  ++   G ++   ++
Sbjct: 459 AKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRI 503


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 172/352 (48%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF+ N   Y +++    +  + E    +  EMG+ GL++ E T+ + ++       +K+ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             ++E M ++     + T NC++  L +    K+A  +FD+++ R  + N+ TY  L+GG
Sbjct: 253 FEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR     EA  V ++M   G  P+++ +N +++G   + K   A+ L   +K++G SP+
Sbjct: 313 LCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPS 372

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y I++  FCK+                    +   YT LI  F     M+    L  
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRS 432

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            MEE G  PD  TY+ LI    I+   +EA R++K MV   F+P    YN ++  Y + G
Sbjct: 433 SMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEG 492

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +     +++ EM  +   P+  SY  +I  L  + +S EA   +E+M++ G+
Sbjct: 493 SSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGI 544



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 172/408 (42%), Gaps = 68/408 (16%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-------SMETFKIAMNAFAAAKERKK 297
           SR Y  +++   +++  ++ +    EM +KG +       ++ TF +  ++F        
Sbjct: 94  SRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFN 153

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
              I  +++ Y F  G+    C        ++ K   LL +  +  F+PN+  YT L+ G
Sbjct: 154 ESKIKVVLDVYSF--GIVIKGCC----EAGEIEKSFDLLVELREFGFSPNVVIYTTLIDG 207

Query: 358 WCRVKNLMEA----------GRVWNE-------------------------MIDKGFKPD 382
            C+   + +A          G V NE                         M + G  P+
Sbjct: 208 CCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPN 267

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           +  +N ++  L K G+  DA K+F+ M+ +G S N+ +Y  +I   C++           
Sbjct: 268 LHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMD 327

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    N   Y  LI GF   R++     L ++++ RG  P  +TYN L+     + 
Sbjct: 328 QMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKG 387

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A ++ KEM   G KP+  TY +++ ++ ++ N E   ++   M   G  PD ++Y+
Sbjct: 388 DTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYS 447

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           VLI G   + R  EA +  + M+EK  +   + YN       + G SY
Sbjct: 448 VLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSY 495



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 57/332 (17%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N  TY  ++  L +    +    M E+M E G+  ++ T+   MN        K
Sbjct: 226 KFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTK 285

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +F+ M +      + T N L+  L R     EA  + D++K     PNL TY  L+
Sbjct: 286 DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLI 345

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C V+ L +A  +  ++  +G  P +V +NI++ G  K G  S A K+ + M+ +G  
Sbjct: 346 DGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM------ 449
           P+  +YTI+I  F + +                       Y+ LI GF  + RM      
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRL 465

Query: 450 ------------DIVYD-----------------LLKEMEERGCPPDGLTYNALIKLMKI 480
                       +++Y+                 L +EMEE+  PP+  +Y  +I+++  
Sbjct: 466 FKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           ++   EA  + ++M+ SG  P+    N+I ++
Sbjct: 526 ERKSKEAEGLVEKMIDSGIGPSDSILNLISRA 557


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 192/421 (45%), Gaps = 32/421 (7%)

Query: 209 LSHNLVVDVLERFR----HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264
           ++HN++VD   RFR     A           G KPG      TYNS++  L R  +++  
Sbjct: 195 VTHNVMVDA--RFRAGDVEAAMALIDSMVSKGIKPGLV----TYNSVLKGLLRNGRWDKA 248

Query: 265 VSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
             +   M   G+   + +F + +  F  A E ++A+  ++ M   +    V + +CL+  
Sbjct: 249 REVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGL 308

Query: 324 LGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             R  ++   A+ L +  +    P+   YT+++GG+CR   ++EA RV +EM+  G  PD
Sbjct: 309 FTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPD 368

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           VV +N +L GL K  + SDA +L   MK +G  P++ ++T +I  +C+            
Sbjct: 369 VVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFD 428

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    +   Y  LI G   +  +    +L  +M  R   P+ +TY+ LI     + 
Sbjct: 429 TISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKG 488

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             D A     EMV  G  P I TYN I+K Y ++GN   G++   +M      PD  +Y 
Sbjct: 489 QVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYN 548

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
            LI G + + +  EA+  L+ M  + ++   + YN   +  S  G     D + +KM   
Sbjct: 549 TLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGAR 608

Query: 603 G 603
           G
Sbjct: 609 G 609



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 23/348 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELM 305
           +++ ++ +  R  + +     L EM E GL+     + + +  F  A    +A+ + + M
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
             +     V T N LL  L + +   +A+ L +++K R   P+L T+T L+ G+CR  N+
Sbjct: 361 VAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A + ++ + D+  +PD+V +N +++G+ + G    A +L++ M ++   PN  +Y+I+
Sbjct: 421 EKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSIL 480

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   C++                    N   Y  +I G+     +      L +M     
Sbjct: 481 IDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYN LI     +    EA  + K M     +P   TYNMI+  +   GN +    
Sbjct: 541 MPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADW 600

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           V+ +M  RG  PD  +Y  +I G +    S ++++  +EML+KG+ AP
Sbjct: 601 VYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGL-AP 647



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T+N ++ +  ++    E   +  +++ R   P++ T+ V++    R  ++  A  + + M
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---- 430
           + KG KP +V +N +L+GLL+ G+   A ++F  M A G +P+VRS+ ++I  FC+    
Sbjct: 221 VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280

Query: 431 ----------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            +   ++CLI  F  R  MD   + L+EM E G  PDG+ Y  +
Sbjct: 281 EEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMV 340

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I       +  EA+R+  EMV  G  P + TYN ++    +        ++ +EM  RG 
Sbjct: 341 IGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGV 400

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  ++T LI G        +A ++ + + ++ ++  ++ YN     + R G     +E
Sbjct: 401 PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANE 460

Query: 595 LAQKM 599
           L   M
Sbjct: 461 LWDDM 465



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ L + R+      +L EM E+G+   + TF   ++ +      +KA+  F+ +
Sbjct: 371 TYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTI 430

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           +  + +  + T N L++ + R     +A  L+D +  R   PN  TY++L+   C    +
Sbjct: 431 SDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQV 490

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A    +EM++KG  P+++ +N +++G  + G  S   +    M+     P++ +Y  +
Sbjct: 491 DNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I  + K+                +M   ++LLK ME     PD +TYN +I    +    
Sbjct: 551 IHGYVKEG---------------KMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA  +YK+M   G +P  +TY  ++  +   GN +   ++ DEM+++G  PDD
Sbjct: 596 QEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDD 649



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           N  +  IM+  +CK            FG       V  ++ EME+R   PD +T+N ++ 
Sbjct: 158 NTYTLNIMVHSYCKT---------LQFGE------VDTVISEMEKRCVFPDVVTHNVMVD 202

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
                   + A+ +   MV  G KP + TYN ++K   + G ++  R+V+  M   G  P
Sbjct: 203 ARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAP 262

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  S+ +LIGG        EA ++ +EM  + +   V+ ++      +R G    +D  A
Sbjct: 263 DVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGE---MDHAA 319

Query: 597 QKMR 600
           + +R
Sbjct: 320 EYLR 323



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%)

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P      Y+ ++ S  +   +T N+++ SY +T  +     V  EM +R   PD  ++ V
Sbjct: 140 PHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNV 199

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++           A   ++ M+ KG+K  ++ YN     L R GR
Sbjct: 200 MVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGR 244


>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 175/384 (45%), Gaps = 26/384 (6%)

Query: 202 LDECGINLSHNLVVDVLERFRHAR---------RPAFRFFCWAGDKPGFAHNSRTYNSMM 252
           LDE  + +S  LV +VL+    ++         +  ++FF W+G    + H   +Y+ +M
Sbjct: 99  LDELQLKVSGVLVGEVLKGILKSKSVLNKTQCAKLGYKFFIWSGRIENYRHTVNSYHIIM 158

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
            I     +F+ M  +L+EM EKG  ++  TF I +     A   K+ V  F     + F+
Sbjct: 159 KIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFR 218

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               + N +L  L   K  K    ++D+ L    +P++ TY VLL   C++  L +  R+
Sbjct: 219 PYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRL 278

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
            +EM  KGF PD   +NI+L  L K  K   A+ L   M+  G  PNV  +T        
Sbjct: 279 LDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTT------- 331

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   LI G      +D       E+   GC PD + Y  +I         ++A   
Sbjct: 332 --------LINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAF 383

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + EM+  G  P + TYN +++ +   G ++    +  EM  RGC P+   Y+ L+  L +
Sbjct: 384 FDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRN 443

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVL 574
             + GEA+K ++ M+E G  A ++
Sbjct: 444 AGKLGEAHKVIKRMVENGQYAHLM 467



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
           F+P   ++N +L GL+ + +      +++ M     SP++ +Y ++++  CK        
Sbjct: 217 FRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLG------ 270

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
                    ++D  + LL EM  +G  PD  TYN L+ ++     P  A+ +   M   G
Sbjct: 271 ---------KLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVG 321

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           F P +  +  ++    + GN +  +  +DE+   GC PD   YTV+I       +  +A 
Sbjct: 322 FGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKAR 381

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + +EM+ KG    V  YN         G+
Sbjct: 382 AFFDEMIMKGQLPNVFTYNSMIRGFCMVGK 411


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 178/383 (46%), Gaps = 23/383 (6%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           GI  + N+V  +L +F    + A   F WA     + H +   + M+ +LG+ RQ + M 
Sbjct: 78  GIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMW 137

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            +L +M  +GL+++E    ++   A A+  K AV +F+ +     +   +T+N LL+ L 
Sbjct: 138 DLLSDMHCRGLVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLDALC 197

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           + K  + A+ +F  L     P+  T+ + + GWC  + + EA     EM  +GF P V+ 
Sbjct: 198 KEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPSVIT 257

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----------------- 428
           +  +LE   K        ++ + M ++G  PNV +YT+++                    
Sbjct: 258 YTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEALSVSHRMK 317

Query: 429 ---CKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQKMP 484
              CK +   Y  LI   G    +     + + EM   G P    TYN +I +   + + 
Sbjct: 318 SSGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLD 377

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYF-QTGNYEMGRKVWDEMI-RRGCCPDDNSYT 542
           ++A+ + KEM     KP + TY  +++ +  + G  +  R + +E++ +     D ++YT
Sbjct: 378 EDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYT 437

Query: 543 VLIGGLISQDRSGEAYKYLEEML 565
           +LI GL     +  AY+  +EM+
Sbjct: 438 LLIHGLCRVGETDWAYRLFDEMV 460



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 16/187 (8%)

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           DA+ LF+ +   G   N  +  +++   CK+               +++++   +   + 
Sbjct: 169 DAVLLFDKLGDMGLERNTETMNVLLDALCKE---------------KKVEVARKVFLVLS 213

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
                PD  T+N  +      +  DEA+   +EM   GF P++ TY  ++++Y +  N+ 
Sbjct: 214 PH-IQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPSVITYTTVLEAYCKQHNFR 272

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           M  ++ D M   GC P+  +YT+++  L       EA      M   G K   L YN   
Sbjct: 273 MVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEALSVSHRMKSSGCKPDTLFYNSLI 332

Query: 581 ADLSRAG 587
             L +AG
Sbjct: 333 NLLGKAG 339



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLL-SMETFKIAMNAFAAA 292
           +G KP    ++  YNS++++LG+A        + + EM   G+  S+ T+   ++ F   
Sbjct: 319 SGCKP----DTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYK 374

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKL--KHRFTPNLT 349
              + A+++ + M     K  + T   LL   L R       + L ++L  KH    +L 
Sbjct: 375 DLDEDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLD 434

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           TYT+L+ G CRV     A R+++EM+     P
Sbjct: 435 TYTLLIHGLCRVGETDWAYRLFDEMVGSEIVP 466



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 17/197 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKA 298
           G   N  TY  +M+ L +   FE  +S+   M   G      F  ++ N    A    +A
Sbjct: 285 GCHPNVITYTMIMTSLAKCHMFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKAGHLSEA 344

Query: 299 VAIFEL-MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL- 355
             +F++ M        + T N ++       L ++A  +  +++     P+L TY  LL 
Sbjct: 345 SQVFQVEMPMNGVPRSLATYNTMISVFCYKDLDEDALSVLKEMETQSCKPDLQTYRPLLR 404

Query: 356 ------GGWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
                 G    V+NL+      NE+++K     D+  + +++ GL ++G+   A +LF+ 
Sbjct: 405 LFLSRRGQDDTVRNLL------NELMNKHSLGLDLDTYTLLIHGLCRVGETDWAYRLFDE 458

Query: 409 MKAKGPSPNVRSYTIMI 425
           M      P  R+  +++
Sbjct: 459 MVGSEIVPRYRTCELLL 475


>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 407

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 186/382 (48%), Gaps = 30/382 (7%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-- 271
           V + L  + +  + A  FF W   + GF H + T+N M+ ILG+  +FET  +++  M  
Sbjct: 10  VCEALSCYINDWQKALEFFNWVEKESGFRHTTETFNRMIDILGKYFEFETCWALINRMIG 69

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
             + L +  TF+I    +  A   ++A+  ++ ++ +  +      N L++ L   K   
Sbjct: 70  NPESLPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDDTSFYN-LVDALCEHKHVV 128

Query: 332 EAQ-LLFDK--LKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           EA+ L F K  + H F+  N   + ++L GW ++    +    W++M  +G   D+ +++
Sbjct: 129 EAEELCFGKNVIAHGFSVSNTKIHNLILRGWSKLGWWGKCKEYWDKMDTEGVPKDLFSYS 188

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF------------------- 428
           I ++ + K GK   A+KL++ MK++    +V +Y  +I                      
Sbjct: 189 IYMDIMCKSGKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGVEFGIRVFREMRER 248

Query: 429 -CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
            C+ N A +  +I       RM   Y +L EM ++GC PD ++Y  L    +++K P E 
Sbjct: 249 GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKKGCQPDSISYMCLFS--RLEK-PSEI 305

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + ++  M+RSG +P + TY M+M+ + + G  +    VW  M   G  PD  +Y  +I  
Sbjct: 306 LSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDA 365

Query: 548 LISQDRSGEAYKYLEEMLEKGM 569
           LI +     A +Y EEM+E+G+
Sbjct: 366 LIQKGMLDMAREYEEEMIERGL 387



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN+++  +G ++  E  + +  EM E+G   ++ T    +         + A  + + M
Sbjct: 221 AYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEM 280

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            K   +    +  CL   L +   P E   LF ++ +    P + TY +L+  + R   L
Sbjct: 281 PKKGCQPDSISYMCLFSRLEK---PSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFL 337

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                VW  M + G  PD  A+N +++ L++ G    A +  E M  +G SP  R
Sbjct: 338 QPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSPRRR 392


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 196/402 (48%), Gaps = 36/402 (8%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAM 286
           A  FF  +  +P    N  ++N ++        FE + ++L EM  +G+ S   T  + +
Sbjct: 16  ALGFFQSSISEP----NVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVIL 71

Query: 287 NAFAAAKERKKAVAIF-----ELMNKYKFKAGVDTIN--CLLENLGRSKLPKEAQLLFDK 339
           +A  A ++  KAV+ F     E    ++     D++    +++ L ++         ++K
Sbjct: 72  SALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEK 131

Query: 340 L-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +   +  P L TYTVL+ G C+   +  A  V+ EMI KG KPD++A++ +++GL K G+
Sbjct: 132 MVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGR 191

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK----QNAA----------------VYTC 438
             +A KL ++M A+GP P   +YT ++   CK    Q A                  Y+ 
Sbjct: 192 VDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSF 251

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           ++TG+    +++  + +++EM +R C PD ++Y   I+ +      +EA ++++ MV  G
Sbjct: 252 IVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 311

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            KP +HTY +I+ ++ + G+      V   M +    P+   YT+++ G +   R  EA 
Sbjct: 312 CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEAL 371

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           +  + +L+ G+    + YN     L +  +   +DE  + +R
Sbjct: 372 ELYQRILKDGILPSTVTYNTVINALCKLKK---MDEALELLR 410



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 187/419 (44%), Gaps = 61/419 (14%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           A +S TY +++  L +A  ++  +   E+M   K   ++ T+ + ++    A + ++A  
Sbjct: 103 APDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACD 162

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGWC 359
           +FE M +   K  +   + L++ L ++    EA+ L D +  R  P     YT ++ G C
Sbjct: 163 VFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLC 222

Query: 360 RVKNLMEAGR-----------------------------------VWNEMIDKGFKPDVV 384
           +   + EA +                                   V  EM D+   PD +
Sbjct: 223 KCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTI 282

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
           ++ + +E L  IG+R +A K+FE M  KG  P++ +Y I+I  FCK+             
Sbjct: 283 SYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLM 342

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKM 483
                  N  +YT ++ GF    R++   +L + + + G  P  +TYN +I  L K++KM
Sbjct: 343 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 402

Query: 484 PDEAVRIYKEMVR--SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
            DEA+ + +EM R     +P+I TY+MI+    + G  E    +  EMI  G  PD  +Y
Sbjct: 403 -DEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTY 461

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           T LI  L    +   A + LEEML+ G+      Y      L R+      D L + MR
Sbjct: 462 TSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMR 520



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/410 (20%), Positives = 178/410 (43%), Gaps = 45/410 (10%)

Query: 163 SESEITSVSYKSTAD----PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVL 218
           S+ E T ++Y    D      ++ER C V +E+       + +        +++ ++D L
Sbjct: 135 SKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDII--------AYSSLIDGL 186

Query: 219 E---RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG 275
               R   AR+         G  P     +  Y S+++ L +  + +  V  ++EM  + 
Sbjct: 187 SKAGRVDEARK-LVDLMIARGPPP----TAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRR 241

Query: 276 LLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
           L   ++T+   +  +    + ++A A+ E M          +    +E L      +EA+
Sbjct: 242 LRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAE 301

Query: 335 LLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            +F+ +  +   P++ TY +++  +C+  ++  A  V   M     KP+   + ++++G 
Sbjct: 302 KVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGF 361

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK----------------------Q 431
           +K  +  +A++L++ +   G  P+  +Y  +I   CK                       
Sbjct: 362 VKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEP 421

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +   Y+ +I G G     +  +DLL EM + G  PD  TY +LI+ +        A+ + 
Sbjct: 422 SIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELL 481

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +EM+++G  P  HTY  +++   ++ + +    +  EM+R G  P++ ++
Sbjct: 482 EEMLKAGIFPDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGHTPNEFTF 530



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 121/274 (44%), Gaps = 20/274 (7%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
           A ++ +Y   +  L    + E    + E M EKG    M T+ I ++ F        A  
Sbjct: 278 APDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATH 337

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWC 359
           +  LM+K   K        +++   +S   +EA  L+ + LK    P+  TY  ++   C
Sbjct: 338 VLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALC 397

Query: 360 RVKNLMEAGRVWNEMIDKG--FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           ++K + EA  +  EM  +    +P +V +++++ GL K+G    A  L   M   G  P+
Sbjct: 398 KLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPD 457

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT +I              + G G   R     +LL+EM + G  PD  TY  L+++
Sbjct: 458 CFTYTSLIQT------------LAGAGKVSR---AMELLEEMLKAGIFPDDHTYGTLVQI 502

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           +  +   D A  + +EM+R+G  P   T+  + K
Sbjct: 503 L-CRSDVDAAWDLLQEMMRNGHTPNEFTFKAVEK 535


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 185/401 (46%), Gaps = 24/401 (5%)

Query: 223 HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLS--M 279
           H    A   F    D+       R++NS+++++ +   F   +   E  +G K  +S  +
Sbjct: 113 HLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 172

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +F + + A        +A+ +F  M   K +  V T   L++ L +     EA LL D+
Sbjct: 173 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 232

Query: 340 LK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           ++     P+  T+ VL+ G C+  +++   ++ + M  KG  P+ V +N ++ GL   GK
Sbjct: 233 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 292

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV--------------------YTC 438
              A+ L + M A    PN  +Y  +I    KQ  +V                    Y+ 
Sbjct: 293 LDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 352

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI+G     + +    L K+M E+GC P+ + Y+ALI  +  +   DEA  I  EMV  G
Sbjct: 353 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P   TY+ ++K +F+TGN +   +VW EM +  C P++  Y+VLI GL    +  EA 
Sbjct: 413 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 472

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
                ML +G++  V+ Y+     L  AG   V  +L  +M
Sbjct: 473 MMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 513



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 168/392 (42%), Gaps = 24/392 (6%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S N V++V+ +     R    + C  G K   + N  ++N ++  + +    +  + +  
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 270 EMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-GRS 327
           EM  +K    + T+   M+         +AV + + M          T N L+  L  + 
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            + +  +L+ +       PN  TY  ++ G C    L +A  + + M+     P+ V + 
Sbjct: 257 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 316

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------WK----- 427
            ++ GL+K G+  D + L   ++ +G   N  +Y+ +I               WK     
Sbjct: 317 TLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEK 376

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
            C+ N  VY+ LI G     ++D   ++L EM  +GC P+  TY++LIK         +A
Sbjct: 377 GCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKA 436

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           +R++KEM ++   P    Y++++    + G       +W  M+ RG  PD  +Y+ +I G
Sbjct: 437 IRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHG 496

Query: 548 LISQDRSGEAYKYLEEML--EKGMKAPVLDYN 577
           L +        K   EML  E   +  V+ YN
Sbjct: 497 LCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 528



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 163/368 (44%), Gaps = 25/368 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIF-EL 304
           T+ S++     +  F T+  + + M  E+ +   + F +   A+  A   +KA+ +F  +
Sbjct: 66  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRM 125

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD---KLKHRFTPNLTTYTVLLGGWCRV 361
           +++++ +  V + N +L  + +  L   A   ++     K   +PN+ ++ +++   C++
Sbjct: 126 VDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKL 185

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             +  A  V+ EM  +  +PDV  +  +++GL K  +  +A+ L + M+ +G  P+  ++
Sbjct: 186 GLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTF 245

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            ++I   CK+                    N   Y  +I G   + ++D    LL  M  
Sbjct: 246 NVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVA 305

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
             C P+ +TY  LI  +  Q    + V +   +   G     + Y+ ++   F+    E 
Sbjct: 306 SKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEE 365

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              +W +M+ +GC P+   Y+ LI GL  + +  EA + L EM+ KG       Y+    
Sbjct: 366 AMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIK 425

Query: 582 DLSRAGRS 589
              + G S
Sbjct: 426 GFFKTGNS 433



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 157/374 (41%), Gaps = 40/374 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN++++ L    + +  VS+L+ M   K + +  T+   +N           
Sbjct: 272 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 331

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V +   + +    A     + L+  L + +  +EA  L+ K+  +   PN+  Y+ L+ G
Sbjct: 332 VHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDG 391

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR   L EA  +  EM++KG  P+   ++ +++G  K G    AI++++ M      PN
Sbjct: 392 LCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPN 451

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
              Y+++I   C                    + +   Y+ +I G  N   +++   L  
Sbjct: 452 EICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 511

Query: 458 EM--EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           EM  +E    PD +TYN L++ +  Q     A+ +   M+  G  P + T N+ + +  +
Sbjct: 512 EMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALRE 571

Query: 516 TGNYEM-GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
             N    GR+  DE++ R               L  + R   A K +E ML+K +     
Sbjct: 572 KLNPPQDGREFLDELVVR---------------LHKRQRIVGAAKIIEVMLQKFLPPNAS 616

Query: 575 DYNKFAADLSRAGR 588
            + +   +L +  +
Sbjct: 617 TWERIIPELCKPKK 630



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMV--RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           ++N+++ ++  + +   A+  Y+  V  ++   P + ++N+++K+  + G  +   +V+ 
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           EM  + C PD  +Y  L+ GL  +DR  EA   L+EM  +G     + +N     L + G
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 588 RSYVLDELAQKMRFSG 603
               + +L   M   G
Sbjct: 257 DMVRVTKLVDNMFLKG 272


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 170/359 (47%), Gaps = 18/359 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM--NAFAAAKERKKAVAIFELM 305
           +N ++S + + R +   V  L +  E   LS +T+ + M  N F   +      ++   +
Sbjct: 124 FNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKI 183

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            K   +  + T N L+  L +     +A  LFD +  R + P++ TYT ++ G C++   
Sbjct: 184 IKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGET 243

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           + A  ++ +M + G +PDVV ++ +++ L K  + ++A+ +F  MKAKG SPN+ +Y  +
Sbjct: 244 VAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSL 303

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C               N  R      +L EM      P+ +T++ LI +   +   
Sbjct: 304 IQGLC---------------NFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 348

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  + K M   G +P + TY+ +M  Y         RK++D MI +GC PD  SY +L
Sbjct: 349 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNIL 408

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           I G     R GEA +   EM+ +G+   ++ YN     L + GR     +L + M  +G
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG 467



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 181/367 (49%), Gaps = 19/367 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++++ ++D L + R     A   F +   K G + N  TYNS++  L    ++    +ML
Sbjct: 263 VTYSTIIDSLCKDRRVNE-ALDIFSYMKAK-GISPNIFTYNSLIQGLCNFSRWREASAML 320

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            EM    ++ ++ TF + +N F       +A  + + M +   +  V T + L+      
Sbjct: 321 NEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 380

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ LFD +  +   P++ +Y +L+ G+C+ K + EA +++NEMI +G  PD+V++
Sbjct: 381 AEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 440

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N +++GL ++G+  +A  LF+ M   G  P++ +Y+I++  FCKQ          G+  +
Sbjct: 441 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQ----------GYLAK 490

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
                 + L + M+     P+ + YN LI  M   +   EA +++ E+   G +P +  Y
Sbjct: 491 -----AFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIY 545

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             I+    + G  +   + +  M   GC P++ SY V+I G +       A + + EM E
Sbjct: 546 TTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRE 605

Query: 567 KGMKAPV 573
           KG  A V
Sbjct: 606 KGFVADV 612



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 164/360 (45%), Gaps = 22/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  +  TY ++++ L +  +      +  +MGE G    + T+   +++    +   +A
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + IF  M        + T N L++ L      +EA  + +++      PN+ T+++L+  
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  N+ EA  V   M + G +P+VV ++ ++ G     +  +A KLF+VM  KG  P+
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPD 401

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V SY I+I  +CK                     +   Y  LI G     R+   +DL K
Sbjct: 402 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 461

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   G  PD  TY+ L+     Q    +A R+++ M  +  KP +  YN+++ +  ++ 
Sbjct: 462 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSR 521

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +  RK++ E+  +G  P+   YT +I GL  +    EA +    M E G       YN
Sbjct: 522 NLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYN 581



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 172/386 (44%), Gaps = 27/386 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G      T+N++++ L +  +F   V + ++M  +G    + T+   +N      E  
Sbjct: 185 KLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETV 244

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +F  M +   +  V T + ++++L + +   EA  +F  +K +  +PN+ TY  L+
Sbjct: 245 AAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLI 304

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      EA  + NEM+     P++V  ++++    K G   +A  + + M   G  
Sbjct: 305 QGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVE 364

Query: 416 PNVRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y+                    +MI K CK +   Y  LI G+   +R+     L
Sbjct: 365 PNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQL 424

Query: 456 LKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
             EM  +G  PD ++YN LI  L ++ ++  EA  ++K M+ +G  P + TY++++  + 
Sbjct: 425 FNEMIHQGLTPDIVSYNTLIDGLCQLGRL-REAHDLFKNMLTNGNLPDLCTYSILLDGFC 483

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G      +++  M      P+   Y +LI  +       EA K   E+  +G++  V 
Sbjct: 484 KQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQ 543

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMR 600
            Y      L + G   +LDE  +  R
Sbjct: 544 IYTTIINGLCKEG---LLDEALEAFR 566



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 136/284 (47%), Gaps = 22/284 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  T++ +++I  +         +L+ M E G+  ++ T+   MN ++   E  +A  +F
Sbjct: 331 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLF 390

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           ++M     K  V + N L+    ++K   EA+ LF+++ H+  TP++ +Y  L+ G C++
Sbjct: 391 DVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL 450

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L EA  ++  M+  G  PD+  ++I+L+G  K G  + A +LF  M++    PN+  Y
Sbjct: 451 GRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 510

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            I+I   CK                     N  +YT +I G      +D   +  + MEE
Sbjct: 511 NILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEE 570

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            GCPP+  +YN +I+     K    AV++  EM   GF   + T
Sbjct: 571 DGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 22/240 (9%)

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA-IKLFEVMKAKGPSPNVRS 420
           +N+ +A   +N M+ +  +P ++  N +L  ++K+    DA I L + M+  G SP+  +
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPD--T 157

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMK 479
           YT+ +             LI  F   +R+D+ + +L ++ + G     +T+N LI  L K
Sbjct: 158 YTLHM-------------LINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCK 204

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           + K   +AV ++ +MV  G++P +HTY  I+    + G       ++ +M   GC PD  
Sbjct: 205 VGKF-GQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVV 263

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDEL 595
           +Y+ +I  L    R  EA      M  KG+   +  YN     L    R    S +L+E+
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 176/354 (49%), Gaps = 24/354 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKER 295
           KP F ++  +Y+ ++S LGRA+ F+ M  +L+++ ++   +     F   +  +  A   
Sbjct: 109 KP-FRYSLLSYDLIISKLGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLP 167

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            +A  +FE +  ++ K  V ++N LL  L +++  ++   +F  + +  +P+  T+ +L+
Sbjct: 168 DRAFQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILI 227

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKGP 414
              C   +L     V++EM  +G KP+VV    ++ GL    K  +A++L E M K    
Sbjct: 228 HAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMI 287

Query: 415 SPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYD 454
            PN   YT +I  FC                    K  +AVY+ LI+      R + V D
Sbjct: 288 KPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSD 347

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L+EM E GC PD +TYNA+I     +   + A R+  EMV  G KP + ++N I+    
Sbjct: 348 ILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLC 407

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           + G  +    + ++M RRGC PD  SY ++  GL    +  EA   L+EM+ KG
Sbjct: 408 KEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKG 461



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 17/308 (5%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           ++ NS+++ L + RQ E M  +  ++   G     TF I ++A     +      +F+ M
Sbjct: 187 KSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEM 246

Query: 306 NKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKN 363
            K   K  V T   L+  L   SKL +  +L  D +K +   PN + YT L+ G+C V  
Sbjct: 247 QKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGE 306

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L  A ++  EM+    K     ++ ++  L K G++ +   +   M   G  P+  +Y  
Sbjct: 307 LNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNA 366

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I   CK+N                ++  + ++ EM E+GC PD  ++N +I  +  +  
Sbjct: 367 IINGHCKEN---------------DLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGK 411

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            D+A+ + ++M R G  P + +Y +I     +    +    + DEMI +G  P + S   
Sbjct: 412 LDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINK 471

Query: 544 LIGGLISQ 551
           L+  L  +
Sbjct: 472 LVDRLCQE 479



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 52/296 (17%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEA 367
           F+  + + + ++  LGR+K+  E + +  +LK   RF P+   +  ++  + R      A
Sbjct: 111 FRYSLLSYDLIISKLGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRA 170

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
            +V+  +     K  V + N +L  LLK  +     ++F  +   G SP+  ++ I+I  
Sbjct: 171 FQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDACTFNILIHA 229

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
            C          + G      +D V+ +  EM++RG  P+ +T+  LI  + +     EA
Sbjct: 230 AC----------LCG-----DLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEA 274

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           +R+ ++MV                            KV+  MI+    P+ + YT LI G
Sbjct: 275 LRLKEDMV----------------------------KVY--MIK----PNASIYTTLIKG 300

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                    A+K  EEM+   +K     Y+   + L + GR   + ++ ++M  +G
Sbjct: 301 FCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENG 356


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 187/397 (47%), Gaps = 27/397 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           A   F  AGD  GF  ++ + N M+  L +  +   + S+ +EM  + + +++ TF + +
Sbjct: 178 ALEGFDRAGDY-GFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVI 236

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFT 345
           N      + +KA  + E M  + F   V T N +++   ++ K+ K   LL + +  R  
Sbjct: 237 NGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIH 296

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  T+ +L+ G+CR +N+  A +V+ EM  +G +P+VV +N ++ GL   GK  +A+ L
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL 356

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
            + M   G  PNV +Y  +I  FCK+                    N   +  LI  +G 
Sbjct: 357 QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGK 416

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             RMD  + L   M + G  P+  TYN LI     +    EA ++ KEM  +G K  + T
Sbjct: 417 AGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVT 476

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN+++ +  + G      ++ DEM   G  P   +Y  LI G   +  S  A      M 
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLME 536

Query: 566 EKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQK 598
           +KG +A ++ YN         G+    + +L+E+ +K
Sbjct: 537 KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 573



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 159/332 (47%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF+ +  TYN+++    +A +     ++L+EM  K +   E TF I ++ F   +    A
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +   +  V T N L+  L  +    EA  L DK+      PN+ TY  L+ G
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K L EA  + +++  +G  P+V+  N +++   K G+  DA  L  +M   G  PN
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V               + Y CLI GF     +     L KEME  G   D +TYN L+  
Sbjct: 439 V---------------STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDA 483

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    +AVR+  EM   G  P+  TYN ++  YF+ GN      V   M ++G   +
Sbjct: 484 LCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRAN 543

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +Y VLI G  ++ +  EA + L EMLEKG+
Sbjct: 544 IVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 575



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 179/410 (43%), Gaps = 43/410 (10%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN--- 287
           +F W   + G  HN   +  ++ +L  A+ +  + ++L+   +    S  T   +++   
Sbjct: 93  YFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLG 152

Query: 288 ---------------AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
                          A+    E   A+  F+    Y F+    + N +L +L +      
Sbjct: 153 SWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGV 212

Query: 333 AQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            + ++ + ++ R   N+ T+ V++ G C+V    +AG V  +M   GF P V+ +N +++
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIID 272

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
           G  K GK   A  L + M AK   PN  ++ I+I  FC+                     
Sbjct: 273 GYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQP 332

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   Y  LI G  +  ++D    L  +M   G  P+ +TYNALI     +KM  EA  + 
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREML 392

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            ++ + G  P + T+N ++ +Y + G  +    +   M+  G CP+ ++Y  LI G   +
Sbjct: 393 DDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCRE 452

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDELAQ 597
               EA K  +EM   G+KA ++ YN     L + G +     +LDE+ +
Sbjct: 453 GNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFE 502



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 33/302 (10%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   N  TYNS+++ L    + +  + + ++M   GL  ++ T+   +N F   K  K
Sbjct: 327 RQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLK 386

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +A  + + + K      V T N L++  G++    +A LL    L     PN++TY  L+
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+CR  N+ EA ++  EM   G K D+V +NI+++ L K G+   A++L + M   G +
Sbjct: 447 VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLN 506

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +Y  +I  + ++  +      T   N R +         ME++G   + +TYN LI
Sbjct: 507 PSHLTYNALIDGYFREGNS------TAALNVRTL---------MEKKGRRANIVTYNVLI 551

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           K    +   +EA R+  EM+  G  P   TY+++                 DEM+ +G  
Sbjct: 552 KGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR----------------DEMMEKGFI 595

Query: 536 PD 537
           PD
Sbjct: 596 PD 597


>gi|413952128|gb|AFW84777.1| hypothetical protein ZEAMMB73_772209 [Zea mays]
          Length = 519

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 175/390 (44%), Gaps = 24/390 (6%)

Query: 201 VLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ 260
            LD CG   S  LVV  L R R++   A   F WA  +PG+A   R  +SM+ IL + R+
Sbjct: 92  ALDGCGAEASEPLVVASLARLRNSCAAAHAAFRWAAAQPGYAPGRRACHSMLDILAKHRR 151

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           F+   ++L+EM      S     + +    AA++   AVA F  +  + F  G    + L
Sbjct: 152 FDAARALLDEMRRASTASPAAVLLLVRRHCAARDVAGAVAAFRALPSFGFHTGAAEFHGL 211

Query: 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR-VKNLMEAGRVWNEMIDKGF 379
           L  L R K  ++A+ L    +  F     ++ ++L GWC  V ++ EA R W+ M  KG 
Sbjct: 212 LSALCRYKNVQDAENLLISWQKEFPFETKSFNIVLNGWCNIVCSVREAKRFWSSMERKGI 271

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------- 430
             DV+++  M+    K G     +KLF  M   G +P+ + Y  +++   K         
Sbjct: 272 ARDVLSYGSMISCFSKAGSLDSVMKLFNRMNEAGVAPDRKVYNAIVFALAKGRCVKEAKM 331

Query: 431 -----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       + A +  LI      R+     ++   M +R   P   T++A   L+ 
Sbjct: 332 LVRSMEEKQVAPDTATFNSLIGPLCKARQFQEAMEMFDAMLQRKLSPSVRTFHA---LLN 388

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           + +   E   +  +M +   +P + TY M+++ + +   +E   K+W  M   G  PD +
Sbjct: 389 VARNSTEVFDLLDKMKQLRCEPEMDTYIMLIRKFCRWREHESVEKLWSAMPANGLSPDRS 448

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +Y VLI GL    R  EA +Y EEM  KG 
Sbjct: 449 AYIVLIHGLFLNGRLEEAARYYEEMKSKGF 478



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 6/193 (3%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKER 295
           ++ G A + + YN+++  L + R  +    ++  M EK +     TF   +     A++ 
Sbjct: 302 NEAGVAPDRKVYNAIVFALAKGRCVKEAKMLVRSMEEKQVAPDTATFNSLIGPLCKARQF 361

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVL 354
           ++A+ +F+ M + K    V T + LL N+ R+    E   L DK+K  R  P + TY +L
Sbjct: 362 QEAMEMFDAMLQRKLSPSVRTFHALL-NVARNS--TEVFDLLDKMKQLRCEPEMDTYIML 418

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +CR +      ++W+ M   G  PD  A+ +++ GL   G+  +A + +E MK+KG 
Sbjct: 419 IRKFCRWREHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAARYYEEMKSKGF 478

Query: 415 SPNVRS-YTIMIW 426
            P  ++   +M W
Sbjct: 479 LPEKKTEEMVMAW 491



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/291 (19%), Positives = 115/291 (39%), Gaps = 18/291 (6%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  G    + +L+ L + +    A+ L D+++   T +     +L+   C  +++  A  
Sbjct: 132 YAPGRRACHSMLDILAKHRRFDAARALLDEMRRASTASPAAVLLLVRRHCAARDVAGAVA 191

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
            +  +   GF       + +L  L +     DA  L    + + P    +S+ I++  +C
Sbjct: 192 AFRALPSFGFHTGAAEFHGLLSALCRYKNVQDAENLLISWQKEFPF-ETKSFNIVLNGWC 250

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                    ++      +R          ME +G   D L+Y ++I         D  ++
Sbjct: 251 N--------IVCSVREAKR------FWSSMERKGIARDVLSYGSMISCFSKAGSLDSVMK 296

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++  M  +G  P    YN I+ +  +    +  + +   M  +   PD  ++  LIG L 
Sbjct: 297 LFNRMNEAGVAPDRKVYNAIVFALAKGRCVKEAKMLVRSMEEKQVAPDTATFNSLIGPLC 356

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
              +  EA +  + ML++ +   V     F A L+ A  S  + +L  KM+
Sbjct: 357 KARQFQEAMEMFDAMLQRKLSPSV---RTFHALLNVARNSTEVFDLLDKMK 404


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 198/425 (46%), Gaps = 21/425 (4%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           +++ +++ + +S +  +   L+E GI+ ++ LV  +L RF      AF  F WA ++  +
Sbjct: 59  DKLSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQTSY 118

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVA 300
            H    Y+ M+ ILG+ ++F  M S++E+M G  G +S+ T    M   A A++ K A+ 
Sbjct: 119 VHTPELYDYMIDILGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMRRLAKARKYKDAID 178

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           +F  + KY      + +N L++ L +    ++A   F + K   T + +++ +L+ G+C+
Sbjct: 179 VFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCK 238

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            +  + A ++  EM   GF PDVV+++  +    +     +   +F+ M+ KG  PNV +
Sbjct: 239 ARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVIT 298

Query: 421 YTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           YT ++                       C  ++  Y+ LI       R+   +D+ ++ME
Sbjct: 299 YTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDME 358

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           ++G   +   YN +I           A+++ + M     KP + TY  ++K   +  + +
Sbjct: 359 KQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIK 418

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           + + +   M +     D  +YT+L+       +   A  Y +E + KGM   V  +    
Sbjct: 419 LLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKALV 478

Query: 581 ADLSR 585
            +L +
Sbjct: 479 EELEQ 483



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 17/192 (8%)

Query: 424 MIWKFCKQNAAV--YTCLITG------FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           ++W   +Q   +  Y  L T           R+     D+ + +E+ G   D    N L+
Sbjct: 140 LMWSLVEQMKGLNGYVSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLM 199

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
             +  +   ++A   + E     FK  I     ++N+++  Y +   + + RK+ +EM +
Sbjct: 200 DALVKEGDVEDAHSAFLE-----FKDCITLDSSSFNILIHGYCKARMFVVARKIMEEMEK 254

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
            G  PD  SY+  I     Q          +EM EKG K  V+ Y      L +A +   
Sbjct: 255 HGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNE 314

Query: 592 LDELAQKMRFSG 603
             E+ +KM+ +G
Sbjct: 315 ALEVYEKMKRNG 326


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 192/423 (45%), Gaps = 61/423 (14%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           VL     A  P+ R F  +  + G A N  TYN ++  L    + E  V ++ +M   G 
Sbjct: 124 VLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGC 183

Query: 277 L-SMETFKIAMNAFAAAKERKKAVAIFELMNKY-KFKAGVDTINCLLENLGRSKLPKEAQ 334
             +  T+   + AF  A E   A  +  LM +    K  + T N ++  L ++   + A+
Sbjct: 184 APNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGAR 243

Query: 335 LLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            +FD++ +    P++ +Y  LL G+C+V  L E+  V++EM  +G  PDVV    ++   
Sbjct: 244 KVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 303

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
            K G    A+ L   M+ +G   N  ++T +I  FCK+                    + 
Sbjct: 304 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 363

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEME--------------------------------- 460
             Y  LI G+    RMD+  +L++EME                                 
Sbjct: 364 VCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 423

Query: 461 --ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             ++G  PD +TY++LI+ +  +K  ++A  +++ M++ G +P   TY  ++  + + GN
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 483

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E    + DEMIR+G  PD  +Y+VLI GL    R+ EA++ L ++  +    PV D  K
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED---PVPDNIK 540

Query: 579 FAA 581
           + A
Sbjct: 541 YDA 543



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 168/363 (46%), Gaps = 19/363 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+A +   YN+++  L  A    +    L  M   G+  ++ T+ I + A  A    ++A
Sbjct: 113 GYAPSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLG 356
           V +   M          T N L+    R+     A+ +   ++      PNL T+  ++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   +  A +V++EM+ +G  PDVV++N +L G  K+G   +++ +F  M  +G  P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V ++T +I   CK             GN   ++    L+ +M ERG   + +T+ ALI 
Sbjct: 292 DVVTFTSLIHATCKA------------GN---LEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               +   D+A+   +EM + G +P++  YN ++  Y + G  ++ R++  EM  +   P
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  +Y+ +I G         A++  ++ML+KG+    + Y+     L    R     EL 
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456

Query: 597 QKM 599
           + M
Sbjct: 457 ENM 459



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 164/365 (44%), Gaps = 41/365 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+ S++    +A   E  V+++ +M E+GL   E TF   ++ F        A
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +   E M K   +  V   N L+     LGR  L +E  L+ +    R  P++ TY+ ++
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE--LIREMEAKRVKPDVVTYSTII 405

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+V NL  A ++  +M+ KG  PD + ++ ++ GL +  + +DA +LFE M   G  
Sbjct: 406 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQ 465

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +YT +I   CK+                    +   Y+ LI G     R    + L
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525

Query: 456 LKEMEERGCPPDGLTYNAL------------IKLMK---IQKMPDEAVRIYKEMVRSGFK 500
           L ++      PD + Y+AL            + L+K   ++ +  EA ++Y+ M+   +K
Sbjct: 526 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 585

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
                Y++++  + + GN         +M+R G  P+  S   L+ GL  +    EA   
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNA 645

Query: 561 LEEML 565
           ++++L
Sbjct: 646 IQDLL 650



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 17/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+ P V A+N +L  L      S A +    M   G +PNV +Y I++   C        
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCA------- 164

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                   R R++    ++ +M   GC P+ +TYN L+         D A R+   M   
Sbjct: 165 --------RGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216

Query: 498 G-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
           G  KP + T+N ++    + G  E  RKV+DEM+R G  PD  SY  L+ G        E
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +     EM ++G+   V+ +        +AG       L  +MR  G
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 4/301 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +   YN++++   +  + +    ++ EM  K +   + T+   ++ +       
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD 415

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A  + + M K        T + L+  L   K   +A  LF+  L+    P+  TYT L+
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+  N+ +A  + +EMI KG  PDVV +++++ GL K  +  +A +L   +  + P 
Sbjct: 476 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+   Y  ++    K        L+ GF  +  M     + + M +R    DG  Y+ LI
Sbjct: 536 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     +A+  +K+M+RSGF P   +   +++  F+ G          +++   CC
Sbjct: 596 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLT--CC 653

Query: 536 P 536
           P
Sbjct: 654 P 654



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           ++ALI+       P  A         +G+ P++  YN ++ +     +    R+    M+
Sbjct: 86  FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLA-LSDASLPSARRFLSSML 144

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           R G  P+  +Y +L+  L ++ R  EA   + +M   G     + YN   A   RAG   
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204

Query: 591 VLDELAQKMRFSG 603
             + +   MR  G
Sbjct: 205 GAERVVSLMREEG 217


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 175/350 (50%), Gaps = 9/350 (2%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +FE    +L+EM  KG +    T+   +     AK+ +K+  +F+ M +      V T  
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 319 CLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++ L ++A+  FD+++    +PN+ TYT LL  + + K L++A  +++ M+D 
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDA 551

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS-YTIMIWKFC--KQNAA 434
              P+ V ++ +++GL K G+   A +++E  K  G S NV S +       C    N  
Sbjct: 552 ACYPNAVTYSALIDGLCKAGEIQKACEVYE--KLIGTSGNVESDFYFEGNDTCTIAPNVV 609

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKE 493
            Y  LI G    +++   ++LL  M   GC P+ + Y+ALI    KI K+ D A  ++  
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKI-DNAQEVFLR 668

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + G+ P++HTY  ++   F+ G  ++  KV  EM+   C P+  +YT +I GL     
Sbjct: 669 MTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGE 728

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +A   L  M EKG    V+ Y      L + G++    +L ++M   G
Sbjct: 729 IEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKG 778



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 172/392 (43%), Gaps = 39/392 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  ++ TYN+++ +L  A Q E    + +EM   G   M+   I   A A  K  + A 
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGF-CMDRSTIGYFAQALCKVGRWAD 257

Query: 300 AIFELMNKYKFKAGVDTINC--LLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           A+  ++ K  F   +DT+ C  ++  L  + L  EA     +++ +   PN+ TY  LL 
Sbjct: 258 AL-NMLEKEDFN--LDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLS 314

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ + K      R+ N M+ +G  P+    N ++ G    G  + A KLF  M   G  P
Sbjct: 315 GFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPP 374

Query: 417 NVRSYTIMIWKFCKQ-----------------------------NAAVYTCLITGFGNRR 447
              +Y I I   C Q                             N A ++  + G G   
Sbjct: 375 GYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVG--- 431

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           + +  + +LKEM  +G  PD  TY  +I  +   K  +++  +++EM R+G  P ++TY 
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++ S+ + G  E  R  +DEM   GC P+  +YT L+   +   +  +A+     M++ 
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDA 551

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
                 + Y+     L +AG      E+ +K+
Sbjct: 552 ACYPNAVTYSALIDGLCKAGEIQKACEVYEKL 583



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 161/365 (44%), Gaps = 38/365 (10%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + GF  ++ TY  +++ L +A++ E    + +EM   G+   + T+ I +++F  A   +
Sbjct: 445 RKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIE 504

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL 355
           +A + F+ M        V T   LL    +SK   +A  +F ++      PN  TY+ L+
Sbjct: 505 QARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALI 564

Query: 356 GGWCRVKNLMEAGRVWNEMIDKG----------------FKPDVVAHNIMLEGLLKIGKR 399
            G C+   + +A  V+ ++I                     P+VV +  +++GL K  K 
Sbjct: 565 DGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKV 624

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
           SDA +L + M A G  PN   Y  +I  FCK                     +   YT L
Sbjct: 625 SDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSL 684

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I       R+D+   +L EM    C P+ +TY A+I  +      ++A+ +   M   G 
Sbjct: 685 IDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGC 744

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY  ++    +TG  +   K++ +M  +GC P+  +Y VLI    +     EA+ 
Sbjct: 745 SPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHL 804

Query: 560 YLEEM 564
            L+EM
Sbjct: 805 LLDEM 809



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 174/420 (41%), Gaps = 60/420 (14%)

Query: 169 SVSYKSTAD----PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHA 224
           +V+Y +  D      EI++ C+V ++L     N+E+                        
Sbjct: 557 AVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVES------------------------ 592

Query: 225 RRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFK 283
                 F+    D    A N  TY +++  L +A++      +L+ M   G    +  + 
Sbjct: 593 -----DFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYD 647

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKH 342
             ++ F    +   A  +F  M K  +   V T   L++ + +  +L    ++L + L  
Sbjct: 648 ALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLND 707

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
              PN+ TYT ++ G  +V  + +A  + + M +KG  P+VV +  +++GL K GK   +
Sbjct: 708 SCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADAS 767

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITG 442
           +KLF+ M +KG +PN  +Y ++I   C                     ++   Y C + G
Sbjct: 768 LKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQG 827

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           F  +    +   LL+EME     P    Y  LI         + A+ ++KE+V       
Sbjct: 828 FSKKFIASL--GLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLN 885

Query: 503 IHT---YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           + +   Y  ++++       E    ++ EM R+G  PD   +  L+ GLI  ++  EA +
Sbjct: 886 MTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQ 945



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 153/404 (37%), Gaps = 74/404 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + N  TY +++    +++Q      +   M +     +  T+   ++    A E +KA
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKA 576

Query: 299 VAIFELM--------NKYKFKAG--------VDTINCLLENLGRSKLPKEAQLLFDK-LK 341
             ++E +        + + F+          V T   L++ L +++   +A  L D  L 
Sbjct: 577 CEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLA 636

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
               PN   Y  L+ G+C++  +  A  V+  M   G+ P V  +  +++ + K G+   
Sbjct: 637 AGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDL 696

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMI--------------------WKFCKQNAAVYTCLIT 441
           A+K+   M     +PNV +YT MI                     K C  N   YT LI 
Sbjct: 697 AMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALID 756

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS---- 497
           G G   + D    L K+M  +GC P+ +TY  LI       + DEA  +  EM  +    
Sbjct: 757 GLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPK 816

Query: 498 ----------GFK-------------------PTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
                     GF                    P    Y M++ S+ + G  E   ++  E
Sbjct: 817 HLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKE 876

Query: 529 MIRRGCCPDDNS---YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           ++      +  S   Y  LI  L    +  EA+    EM  KG+
Sbjct: 877 LVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGI 920



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 156/393 (39%), Gaps = 45/393 (11%)

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           RFF WA  + G++H    Y+++  ILG      T   +L E+GE      E  +  +N  
Sbjct: 119 RFFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGED---DREVLRRLLNVL 175

Query: 290 AAAKERK----KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-- 343
                R     +A+     +  + ++    T N L++ L  +    + ++ F   K    
Sbjct: 176 VRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASA---GQVEMGFRVQKEMSA 232

Query: 344 --FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
             F  + +T        C+V    +A    N +  + F  D V    M+ GL++    ++
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADA---LNMLEKEDFNLDTVLCTQMISGLMEASLFNE 289

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLIT 441
           A+     M+     PNV +Y  ++  F                    C  N +++  L+ 
Sbjct: 290 AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVH 349

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMP-----DEAVRIYKEMV 495
           G+ N       Y L   M   G PP  + YN  I  +   +++P     D   ++Y+EM+
Sbjct: 350 GYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEML 409

Query: 496 -RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             S     ++T N   +     G +E   ++  EM+R+G  PD ++YT +I  L    + 
Sbjct: 410 AASCVLNKVNTAN-FSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKV 468

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            +++   +EM   G+   V  Y        +AG
Sbjct: 469 EKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAG 501



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 111/250 (44%), Gaps = 18/250 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY +M+  L +  + E  +++L  M EKG   ++ T+   ++      +   ++ +F
Sbjct: 712 NVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLF 771

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGWCRV 361
           + MN         T   L+ +   + L  EA LL D++KH   P +L  Y   + G+   
Sbjct: 772 KQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF--S 829

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K  + +  +  EM      P    + ++++   K G+   A++L + +     S N+ S 
Sbjct: 830 KKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTS- 888

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
                        +Y  LI       +++  + L  EM  +G  PD + + +L+K L+++
Sbjct: 889 -----------TGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEV 937

Query: 481 QKMPDEAVRI 490
            K  DEA+++
Sbjct: 938 NKW-DEALQL 946


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 183/395 (46%), Gaps = 27/395 (6%)

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
             L VD ++   +   P F          G   ++  YN ++++L    + + + ++  E
Sbjct: 126 QQLFVDAVDLVLNQLDPLF----------GIQADTVVYNHLLNVLVEGSKMKLLETVYSE 175

Query: 271 MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           MGE+G+   + TF   M A   A + + AV + E M+         T   L++       
Sbjct: 176 MGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGS 235

Query: 330 PKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
            K A ++    L+   +P   T  VL+ G+C++  + +A     + I  GF+PD + +N 
Sbjct: 236 IKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNT 295

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
            + GL + G    A+K+ +VM  +G  P+V +Y I++   CK                 +
Sbjct: 296 FVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNG---------------Q 340

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           ++    +L +M ERGC PD  T+N LI  +      +EA+ + +++   G  P ++T+N+
Sbjct: 341 LEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNI 400

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++ +  + G+ ++  ++++EM   GC PD+ +Y  LI  L S  + G+A   L+EM   G
Sbjct: 401 LINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                + YN     L +  R    +E+  +M   G
Sbjct: 461 CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQG 495



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 21/326 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N          A+ + ++M +      V T N ++  L ++   +EA+ + +++
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P++TT+  L+   C    L EA  +  ++  KG  PDV   NI++  L K+G  
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A++LFE MK+ G +P+  +Y  +I   C                     ++   Y  +
Sbjct: 412 QLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTI 471

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G   + R++   ++  +M+ +G   + +T+N LI  +   K  D+A ++  +M+  G 
Sbjct: 472 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGL 531

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P   TYN I+  Y + G+ +    +   M   G   D  +Y  LI GL    R+  A K
Sbjct: 532 QPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALK 591

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSR 585
            L  M  KGM+A    YN     L R
Sbjct: 592 LLRGMRIKGMRATPKAYNPVIQSLFR 617



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 24/347 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++  L    + E  + +  ++  KGL   + TF I +NA     + + A+ +FE M
Sbjct: 362 TFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEM 421

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                     T N L++NL    KL K   LL +        +  TY  ++ G C+   +
Sbjct: 422 KSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRI 481

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V+++M  +G   + +  N +++GL K  +  DA +L   M ++G  PN  +Y  +
Sbjct: 482 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSI 541

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +  +CKQ            G+ ++     D+L+ M   G   D +TY  LI  +      
Sbjct: 542 LTHYCKQ------------GDIKK---AADILQTMTANGFEVDVVTYGTLINGLCKAGRT 586

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             A+++ + M   G + T   YN +++S F+  N      ++ EM   G  PD  +Y ++
Sbjct: 587 QVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIV 646

Query: 545 IGGLISQDRSG----EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             GL    R G    EA+ +L EM++KG       +   A  L   G
Sbjct: 647 FRGLC---RGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 22/372 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+ ++ L +       + +++ M ++G    + T+ I +N      + ++A
Sbjct: 285 GFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 344

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M +      + T N L+  L      +EA  L  ++  +  +P++ T+ +L+  
Sbjct: 345 KGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINA 404

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +   A R++ EM   G  PD V +N +++ L  +GK   A+ L + M++ G   +
Sbjct: 405 LCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRS 464

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+                    NA  +  LI G    +R+D    L+ 
Sbjct: 465 TVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLIS 524

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  P+ +TYN+++     Q    +A  I + M  +GF+  + TY  ++    + G
Sbjct: 525 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAG 584

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             ++  K+   M  +G      +Y  +I  L  ++ + +A     EM E G       Y 
Sbjct: 585 RTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYK 644

Query: 578 KFAADLSRAGRS 589
                L R G S
Sbjct: 645 IVFRGLCRGGGS 656



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYNS+++   +    +    +L+ M   G  + + T+   +N    A   + A
Sbjct: 530 GLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVA 589

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           + +   M     +A     N ++++L R    ++A  LF ++      P+  TY ++  G
Sbjct: 590 LKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRG 649

Query: 358 WCRVK-NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            CR   ++ EA     EM+DKGF P+  +  ++ EGLL +G     I+  E++  K 
Sbjct: 650 LCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKA 706



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 16/255 (6%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +  G   ++ TYN+++  L +  + E    + ++M  +G+  +  TF   ++     K  
Sbjct: 457 ESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRI 516

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             A  +   M     +    T N +L +  +   + K A +L     + F  ++ TY  L
Sbjct: 517 DDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTL 576

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+      A ++   M  KG +    A+N +++ L +     DA+ LF  M   G 
Sbjct: 577 INGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGE 636

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P+  +Y I+    C+           G G+ R     +D L EM ++G  P+  ++  L
Sbjct: 637 PPDAFTYKIVFRGLCR-----------GGGSIRE---AFDFLLEMVDKGFIPEFSSFRML 682

Query: 475 IKLMKIQKMPDEAVR 489
            + +    M D  +R
Sbjct: 683 AEGLLNLGMDDYFIR 697


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 155/332 (46%), Gaps = 21/332 (6%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL 336
           S+  F   + +FA  K+    V++   M+ ++    V ++N L+  L R + +     +L
Sbjct: 92  SVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVL 151

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               K    P+  T+  L+ G C    + EA  ++NEM+ +G +P+V+++  ++ GL K 
Sbjct: 152 GKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKT 211

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           G  S A+ +F+ M+  G  PNV +Y+ +I   CK                     N   Y
Sbjct: 212 GNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTY 271

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             ++ GF N  +++    L KEM  R   P+ +T+  L+  +  + M  EA  +++ M  
Sbjct: 272 NSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTE 331

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P I TYN +M  Y         +KV++ MIR+GC P  +SY +LI G     R  E
Sbjct: 332 KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDE 391

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           A   L EM  K +    + Y+     L + GR
Sbjct: 392 AKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 190/426 (44%), Gaps = 62/426 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   ++ T+N++++ L    + +  V +  EM ++G   ++ ++   +N         
Sbjct: 156 KLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTS 215

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            AV +F+ M +   K  V T + ++++L + +L  +A     ++  R   PN+ TY  ++
Sbjct: 216 MAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV 275

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C +  L EA R++ EM+ +   P+ V   I+++GL K G  S+A  +FE M  KG  
Sbjct: 276 HGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVE 335

Query: 416 PNVRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           P++ +Y                     IMI K C   A  Y  LI G+   RRMD    L
Sbjct: 336 PDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSL 395

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG----------------- 498
           L EM  +   PD +TY+ L++ +     P EA+ ++KEM   G                 
Sbjct: 396 LAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCK 455

Query: 499 ------------------FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
                              +P I  Y ++++  F  G  E+ ++++ ++   G  PD  +
Sbjct: 456 HGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRT 515

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN----KFAADLSRAGRSYVLDELA 596
           YTV+I GL+ +  S EAY    +M + G       YN     F  +   +    ++DE+ 
Sbjct: 516 YTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 575

Query: 597 QKMRFS 602
            K RFS
Sbjct: 576 GK-RFS 580



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 15/209 (7%)

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +P VV     L    K  + S  + L   M     + NV S  I+I   C+ N       
Sbjct: 90  RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLN------- 142

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                    +D    +L +M + G  PD +T+NALI  +  +    EAV ++ EMV+ G 
Sbjct: 143 --------HVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGH 194

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P + +Y  ++    +TGN  M   V+ +M + GC P+  +Y+ +I  L       +A +
Sbjct: 195 EPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAME 254

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +L EM+E+G+   V  YN         G+
Sbjct: 255 FLSEMVERGIPPNVFTYNSIVHGFCNLGQ 283



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 51/101 (50%)

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           +++ N+++    +  + +    V  +M + G  PD  ++  LI GL ++ +  EA +   
Sbjct: 128 VYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFN 187

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EM+++G +  V+ Y      L + G + +  ++ +KM  +G
Sbjct: 188 EMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG 228


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 170/352 (48%), Gaps = 18/352 (5%)

Query: 193 SLDRNMEAVLDECG-INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG-FAHNSRTYNS 250
           S++  + A+  EC  + L+  +   +L       +PA  FF WA  + G ++H     + 
Sbjct: 65  SVEDLVRALAAECSEVRLTSGVADSLLRGCGDCWKPALGFFLWAQSRGGGYSHTPYACSR 124

Query: 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           M+ +LG+ RQ + M  +L EM  +GL++++T   ++   AAA++ + A+ +F+ +     
Sbjct: 125 MVDLLGKTRQIDRMWDLLSEMHCRGLVTVDTVAKSIRRLAAARKWRDAILLFDQLEDLGL 184

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
           +   +T+N LL+ L + K  + A+ +F  L     P+  T+ + + GWC V+ + EA   
Sbjct: 185 ERNTETMNVLLDALCKEKKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEALWT 244

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
             EM  +GF P V+ +  +LE   K        ++ + M ++G  PNV +YT+       
Sbjct: 245 IEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM------- 297

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   ++T      R +    +   M+  GC PD L YNALI L+       EA ++
Sbjct: 298 --------IMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQV 349

Query: 491 YK-EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           ++ EM R+G    + TYN ++    Q G  +    V  EM  + C PD  +Y
Sbjct: 350 FRVEMPRNGVLRNVATYNTMISILCQYGRDDDALGVLKEMEAQSCKPDLQTY 401



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 22/226 (9%)

Query: 369 RVWN---EMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           R+W+   EM  +G    D VA +I    L    K  DAI LF+ ++  G   N  +  ++
Sbjct: 137 RMWDLLSEMHCRGLVTVDTVAKSI--RRLAAARKWRDAILLFDQLEDLGLERNTETMNVL 194

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   CK+               +++++  ++   M      PD  T+N  +      +  
Sbjct: 195 LDALCKE---------------KKVELAREVFV-MLSPHIAPDAYTFNIFVHGWCSVRRI 238

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           DEA+   +EM   GF P + TY  ++++Y +  N+    +V D M  +GC P+  +YT++
Sbjct: 239 DEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMI 298

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           +  L   +R  EA    + M   G K   L YN     L RAG  +
Sbjct: 299 MTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLF 344



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 40/238 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF     TY +++    + R F  +  +L+ MG +G   ++ T+ + M +    +  ++A
Sbjct: 252 GFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLTKCERFEEA 311

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLG 356
           +++ + M     K      N L+  LGR+    EA  +F  +  ++    N+ TY  ++ 
Sbjct: 312 LSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMIS 371

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN----------------------------- 387
             C+     +A  V  EM  +  KPD+  +                              
Sbjct: 372 ILCQYGRDDDALGVLKEMEAQSCKPDLQTYQPLLRLLLGRRGQAAAVHRLLSELRDRNGL 431

Query: 388 --------IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
                   +++ GL K+G+   A  L++ M      P  R+  +++ +  +QN   Y 
Sbjct: 432 GLDLDTYTLLIHGLCKVGETDWAYLLYDEMVGSEIVPRPRTCELLLSEMQRQNMEAYV 489



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 1/149 (0%)

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  ++E+ G   +  T N L+  +  +K  + A  ++  M+     P  +T+N+ +  + 
Sbjct: 175 LFDQLEDLGLERNTETMNVLLDALCKEKKVELAREVFV-MLSPHIAPDAYTFNIFVHGWC 233

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
                +      +EM  RG  P   +YT ++     Q      Y+ L+ M  +G    V+
Sbjct: 234 SVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVI 293

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y      L++  R      ++ +M+ SG
Sbjct: 294 TYTMIMTSLTKCERFEEALSVSDRMKSSG 322


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 161/332 (48%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  N  TYN++++ L +A + E   +M+E M +KG+   + T+ + ++AF  A    +A
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + +   M        V T N +++ L +S    EA Q+          P+  T+ +L+ G
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  N  +A  ++ EM+ K  +PDV+    +++GL K G+   A  + ++M   G  PN
Sbjct: 373 ACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 432

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y +++   CK                 R++   + L+EM   GC P+ +TY +L+  
Sbjct: 433 VVTYNVLVHGLCKSG---------------RIEEPCEFLEEMVSSGCVPESMTYGSLVYA 477

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      D+A+++  ++   G+ P   TYN+++   +++G  E    V +EM+ +G  PD
Sbjct: 478 LCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPD 537

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             ++    GGL          + L  +L KGM
Sbjct: 538 SFTFAACFGGLHRSGNLAGTMELLRVVLAKGM 569



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 170/392 (43%), Gaps = 28/392 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TYN+++  L +A   E    +   M  +G + ++ T+ + +N         
Sbjct: 109 KRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRID 168

Query: 297 KAVAIFELMNKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLTTY 351
           +A  + + M +        + T N  L+ L +  +  EA  L   L+    R +P+  T+
Sbjct: 169 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 228

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + L+ G C+     EA    ++MI  G+ P+VV +N ++ GL K  K   A  + E M  
Sbjct: 229 STLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVD 286

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
           KG +P+V +Y++++  FCK                     N   +  +I G     R   
Sbjct: 287 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 346

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            + +  ++  R   PD +T+N LI         ++A  +++EMV    +P + T+  ++ 
Sbjct: 347 AFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALID 406

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              + G  E  R + D M   G  P+  +Y VL+ GL    R  E  ++LEEM+  G   
Sbjct: 407 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVP 466

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + Y      L RA R+    +L  K++  G
Sbjct: 467 ESMTYGSLVYALCRASRTDDALQLVSKLKSFG 498



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 186/434 (42%), Gaps = 59/434 (13%)

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           +N+V+  L R     R A   F     + G A    TYN++++ L ++ +    + + EE
Sbjct: 48  YNIVLQSLCRAGETAR-ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEE 106

Query: 271 MGEKG------------------------------------LLSMETFKIAMNAFAAAKE 294
           + ++G                                    + ++ T+ + +N       
Sbjct: 107 LVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR 166

Query: 295 RKKAVAIFELMNKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLT 349
             +A  + + M +        + T N  L+ L +  +  EA  L   L+    R +P+  
Sbjct: 167 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 226

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           T++ L+ G C+     EA    ++MI  G+ P+VV +N ++ GL K  K   A  + E M
Sbjct: 227 TFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESM 284

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
             KG +P+V +Y++++  FCK +               R+D   +LL  M  RGC P+ +
Sbjct: 285 VDKGVTPDVITYSVLVDAFCKAS---------------RVDEALELLHGMASRGCTPNVV 329

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           T+N++I  +       EA +I  ++      P   T+N+++    + GN+E    +++EM
Sbjct: 330 TFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEM 389

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           + +   PD  ++  LI GL    +   A   L+ M   G+   V+ YN     L ++GR 
Sbjct: 390 VAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRI 449

Query: 590 YVLDELAQKMRFSG 603
               E  ++M  SG
Sbjct: 450 EEPCEFLEEMVSSG 463



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 168/388 (43%), Gaps = 30/388 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG---LLSMETFKIAMNAFAAAKERK 296
           G   N  TY+ +++ L +  + +    +++EM  K    L ++ T+   ++         
Sbjct: 146 GCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTA 205

Query: 297 KAVAIFELMNKYKFKAGVDTI--NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           +A  +   +     +   DT+  + L++ L +     EA    D +   + PN+ TY  L
Sbjct: 206 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA-CNDDMIAGGYVPNVVTYNAL 264

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+   +  A  +   M+DKG  PDV+ ++++++   K  +  +A++L   M ++G 
Sbjct: 265 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGC 324

Query: 415 SPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYD 454
           +PNV ++  +I   CK +                       +  LI G       +    
Sbjct: 325 TPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASA 384

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L +EM  +   PD +T+ ALI  +      + A  I   M   G  P + TYN+++    
Sbjct: 385 LFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLC 444

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           ++G  E   +  +EM+  GC P+  +Y  L+  L    R+ +A + + ++   G     +
Sbjct: 445 KSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTV 504

Query: 575 DYNKFAADLSRAGRS----YVLDELAQK 598
            YN     L ++G++     VL+E+  K
Sbjct: 505 TYNILVDGLWKSGKTEQAITVLEEMVGK 532



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM   G  P  +TYN +I  +         + +++E+V+ G  P + TYN ++ S  + G
Sbjct: 71  EMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAG 130

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA--PVLD 575
           + E  R++   M  RGC P+  +Y+VLI GL    R  EA + ++EM  K       ++ 
Sbjct: 131 DLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 190

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
           YN F   L +   +    EL + +R  G   VS
Sbjct: 191 YNSFLDGLCKQSMTAEACELMRSLR-DGSLRVS 222



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  TYN ++  L ++ + E     LEEM   G +    T+   + A   A     A
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDA 487

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   +  + +     T N L++ L +S   ++A  + +++  +   P+  T+    GG
Sbjct: 488 LQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGG 547

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
             R  NL     +   ++ KG  PD    + +L+
Sbjct: 548 LHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 179/382 (46%), Gaps = 22/382 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+++  L +A+  +    +L+ M +KG+ L + T+   ++    A+   +A  + 
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M     K  V T N +++ L +++    A+ +   +  +   P++ TY  ++ G C+ 
Sbjct: 258 QHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 317

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + +  A  V   MIDK  KPD+  +N ++ G L  G+  + ++  E M A+G  P+V +Y
Sbjct: 318 QAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTY 377

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           ++++   CK                     N  +Y  L+ G+  R  +  + DLL  M  
Sbjct: 378 SLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVA 437

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P+   +N ++     + M DEA+ I+  M + G  P + TY +++ +  + G  + 
Sbjct: 438 NGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDD 497

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
               +++MI  G  P+   +  L+ GL + DR  +A +   EM ++G++  V+ +N    
Sbjct: 498 AVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMC 557

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
           +L   G+  V   L   M   G
Sbjct: 558 NLCNEGQVMVAQRLIDSMERVG 579



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 20/323 (6%)

Query: 286 MNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-- 342
           +N    AK   +A+ I    M ++     V + N LL+ L   K  +EA  L   +    
Sbjct: 132 LNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDG 191

Query: 343 --RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
               TPN+ TY  ++ G C+ + +  A  V   MIDKG K DVV ++ +++GL K     
Sbjct: 192 GGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVD 251

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            A  + + M  KG  P+V +Y  +I   CK  A               +D    +L+ M 
Sbjct: 252 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA---------------VDRAEGVLQHMI 296

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           ++G  PD +TYN +I  +   +  D A  + + M+    KP I TYN ++  Y  TG ++
Sbjct: 297 DKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWK 356

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              +  +EM  RG  PD  +Y++L+  L    +  EA K    M+ KG+K  V  Y    
Sbjct: 357 EVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
              +  G    L +L   M  +G
Sbjct: 417 HGYAARGAIADLTDLLDLMVANG 439



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 159/354 (44%), Gaps = 22/354 (6%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           +TYN ++       +++ +V  LEEM  +GL   + T+ + ++      +  +A  IF  
Sbjct: 340 QTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYC 399

Query: 305 MNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M +   K  V     LL     R  +     LL   + +  +PN   + ++L  + +   
Sbjct: 400 MIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAM 459

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + EA  +++ M   G  PDVV + I+++ L K+G+  DA+  F  M   G +PN   +  
Sbjct: 460 IDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNS 519

Query: 424 MIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +++  C                    + N   +  ++    N  ++ +   L+  ME  G
Sbjct: 520 LVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVG 579

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+ ++YN LI    +    DEA ++   MV  G KP + +Y+ +++ Y +TG  +   
Sbjct: 580 VRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAY 639

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            ++ EM+R+G  P   +Y+ ++ GL    R  EA +    M++ G +  +  YN
Sbjct: 640 CLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYN 693



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 196/454 (43%), Gaps = 35/454 (7%)

Query: 172 YKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRF 231
           Y ST + +E+ R    ++E+++   + + V        +++L++D L +          F
Sbjct: 349 YLSTGEWKEVVRR---LEEMYARGLDPDVV--------TYSLLLDYLCKNGKCTEARKIF 397

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFA 290
           +C    + G   N   Y  ++           +  +L+ M   G+      F I + A+A
Sbjct: 398 YCMI--RKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYA 455

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
                 +A+ IF  M+++     V T   L++ L +     +A L F+++ +   TPN  
Sbjct: 456 KKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSV 515

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            +  L+ G C V    +A  ++ EM D+G +P+VV  N ++  L   G+   A +L + M
Sbjct: 516 VFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM 575

Query: 410 KAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRM 449
           +  G  PNV SY  +I   C                    K +   Y  L+ G+    R+
Sbjct: 576 ERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRI 635

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  Y L +EM  +G  P  +TY+ +++ +   +   EA  +Y  M++SG +  I+TYN+I
Sbjct: 636 DNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNII 695

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    +T   +   K++  +  +   P+  ++T++I  L    R  +A      +   G+
Sbjct: 696 LNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGL 755

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              V+ Y     ++ + G     D L   M  SG
Sbjct: 756 VPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSG 789



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 171/422 (40%), Gaps = 57/422 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TYN+++  L +A+  +    +L+ M +KG+   + T+   ++    A+   +A
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRA 323

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M     K  + T NCL+     +   KE     +++  R   P++ TY++LL  
Sbjct: 324 DGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDY 383

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     EA +++  MI KG KP+V  + I+L G    G  +D   L ++M A G SPN
Sbjct: 384 LCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPN 443

Query: 418 -----------------------------------VRSYTIMIWKFCK------------ 430
                                              V +Y I+I   CK            
Sbjct: 444 NYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFN 503

Query: 431 --------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    N+ V+  L+ G     R +   +L  EM ++G  P+ + +N ++  +  + 
Sbjct: 504 QMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEG 563

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A R+   M R G +P + +YN ++  +   G  +   ++ D M+  G  PD  SY 
Sbjct: 564 QVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYD 623

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
            L+ G     R   AY    EML KG+    + Y+     L    R     EL   M  S
Sbjct: 624 TLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKS 683

Query: 603 GK 604
           G+
Sbjct: 684 GQ 685



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 66/357 (18%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL---LFDKL----KHRFTPNLTT 350
           A+ +F+ +  +   A V   N LL  + R++    ++L   LF+++     ++  P+L T
Sbjct: 33  ALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCT 92

Query: 351 YTVLLGGWCR-----------------------------VKNLMEAGRV-------WNEM 374
           Y++L G +CR                             +  L +A RV          M
Sbjct: 93  YSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRM 152

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP---SPNVRSYTIMIWKFCKQ 431
            + G  P+VV+ N +L+GL    +  +A++L   M   G    +PNV +Y  +I   CK 
Sbjct: 153 PEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKA 212

Query: 432 NA--------------------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            A                      Y+ +I G    + +D    +L+ M ++G  PD +TY
Sbjct: 213 QAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTY 272

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N +I  +   +  D A  + + M+  G KP + TYN I+    +    +    V   MI 
Sbjct: 273 NTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMID 332

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +   PD  +Y  LI G +S     E  + LEEM  +G+   V+ Y+     L + G+
Sbjct: 333 KDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGK 389



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 158/362 (43%), Gaps = 23/362 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++ +++D L +         +F     D  G   NS  +NS++  L    ++E    + 
Sbjct: 480 VTYGILIDALCKLGRVDDAVLKFNQMIND--GVTPNSVVFNSLVYGLCTVDRWEKAEELF 537

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN---L 324
            EM ++G+  ++  F   M       +   A  + + M +   +  V + N L+      
Sbjct: 538 FEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLA 597

Query: 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           GR+   + AQLL   +     P+L +Y  LL G+C+   +  A  ++ EM+ KG  P  V
Sbjct: 598 GRTD--EAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAV 655

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            ++ +L+GL    + S+A +L+  M   G   ++ +Y I++   CK N            
Sbjct: 656 TYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNC----------- 704

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
               +D  + + + +  +   P+ +T+  +I ++       +A+ ++  +   G  P + 
Sbjct: 705 ----VDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVV 760

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY ++MK+  Q G  +    ++  M + GC PD      +I  L+ +     A  YL ++
Sbjct: 761 TYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKI 820

Query: 565 LE 566
            E
Sbjct: 821 DE 822


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 174/370 (47%), Gaps = 19/370 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  + S++E+M   G+     T+   +         ++A  +FE 
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S  PKEA ++L + + + F+P++ TY  L+  + R   
Sbjct: 305 MKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  + N+M +KG KPDV  +  +L G  + GK   A+ +FE M+  G          
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG---------- 414

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N   +   I  +GNR +   +  +  E+   G  PD +T+N L+ +     M
Sbjct: 415 -----CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   ++KEM R+GF P   T+N ++ +Y + G++E    V+  M+  G  PD ++Y  
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K L EM +   K   L Y       +      ++  LA+++ +SG
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV-YSG 588

Query: 604 KFEVSNVLAR 613
             E   VL +
Sbjct: 589 VIEPRAVLLK 598



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           KGL   + F +A+ AF    ++K           Y+       +  ++  LG+      A
Sbjct: 143 KGLGFHKKFDLALRAFDWFMKQKD----------YQSMLDNSVVAIIISMLGKEGRVSSA 192

Query: 334 QLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
             +F+ L+   F+ ++ +YT L+  +       EA  V+ +M + G KP ++ +N++L  
Sbjct: 193 ANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNV 252

Query: 393 LLKIGKRSDAI-KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
             K+G   + I  L E MK+ G +P+  +Y  +I           TC   G  ++    +
Sbjct: 253 FGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI-----------TCCKRGSLHQEAAQV 301

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
                +EM+  G   D +TYNAL+ +      P EA+++  EMV +GF P+I TYN ++ 
Sbjct: 302 ----FEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           +Y + G  +   ++ ++M  +G  PD  +YT L+ G     +   A    EEM   G K 
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417

Query: 572 PVLDYNKF 579
            +  +N F
Sbjct: 418 NICTFNAF 425



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF+ +  TYNS++S   R    +  + +  +M EKG    + T+   ++ F  A + + A
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           ++IFE M     K  + T N  ++  G      E   +FD++     +P++ T+  LL  
Sbjct: 404 MSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAV 463

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +     E   V+ EM   GF P+    N ++    + G    A+ ++  M   G +P+
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD 523

Query: 418 VRSYTIMI--------WKF------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  ++        W+             CK N   Y  L+  + N + + +++ L +
Sbjct: 524 LSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAE 583

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+      P  +    L+ +     +  EA R + E+   GF P I T N ++  Y +  
Sbjct: 584 EVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQ 643

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                  V D M  RG  P   +Y  L+         G++ + L E+L KG+K  ++ YN
Sbjct: 644 MVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  R  R      +  +MR SG
Sbjct: 704 TVIYAYCRNTRMRDASRIFSEMRNSG 729



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 159/370 (42%), Gaps = 52/370 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + +  T+N+++++ G+      +  + +EM   G +   ETF   ++A++     ++A
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + ++  M        + T N +L  L R  + ++++ +  +++  R  PN  TY  LL  
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 358 WCRVKN-----------------------------------LMEAGRVWNEMIDKGFKPD 382
           +   K                                    L EA R ++E+ ++GF PD
Sbjct: 569 YANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPD 628

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +   N M+    +    + A  + + MK +G +P++ +Y  +++   +            
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRS---------AD 679

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           FG         ++L+E+  +G  PD ++YN +I          +A RI+ EM  SG  P 
Sbjct: 680 FGKSE------EILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPD 733

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TYN  + SY     +E    V   MI+ GC P+ N+Y  ++ G    +R  EA  ++E
Sbjct: 734 VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVE 793

Query: 563 EMLEKGMKAP 572
           ++      AP
Sbjct: 794 DLRNLDPHAP 803



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 175/432 (40%), Gaps = 92/432 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQ----------------------FETMVS------MLEE- 270
           GF+++  TYN+++ + G++ +                      + +++S      ML+E 
Sbjct: 309 GFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEA 368

Query: 271 ------MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
                 M EKG    + T+   ++ F  A + + A++IFE M     K  + T N  ++ 
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428

Query: 324 LGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            G      E   +FD++     +P++ T+  LL  + +     E   V+ EM   GF P+
Sbjct: 429 YGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------WKF------ 428
               N ++    + G    A+ ++  M   G +P++ +Y  ++        W+       
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVY----------------------------D 454
                 CK N   Y  L+  + N + + +++                            D
Sbjct: 549 EMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCD 608

Query: 455 LLKEME-------ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           LL E E       ERG  PD  T N+++ +   ++M  +A  +   M   GF P++ TYN
Sbjct: 609 LLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYN 668

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +M  + ++ ++    ++  E++ +G  PD  SY  +I       R  +A +   EM   
Sbjct: 669 SLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNS 728

Query: 568 GMKAPVLDYNKF 579
           G+   V+ YN F
Sbjct: 729 GIVPDVITYNTF 740


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 19/370 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  + S++E+M   G+     T+   +         ++A  +FE 
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S  PKEA  + ++++ + F+P++ TY  L+  + R   
Sbjct: 305 MKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGM 364

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  + N+M +KG KPDV  +  +L G  + GK   A+ +FE M+  G          
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAG---------- 414

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N   +   I  +GNR +   +  +  E+   G  PD +T+N L+ +     M
Sbjct: 415 -----CKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   ++KEM R+GF P   T+N ++ +Y + G++E    V+  M+  G  PD ++Y  
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K L EM +   K   L Y       +      ++  LA+++ +SG
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV-YSG 588

Query: 604 KFEVSNVLAR 613
             E   VL +
Sbjct: 589 VIEPRAVLLK 598



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 22/355 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++S   RA + E+ +++ EEM   G   ++ TF   +  +    +    + IF+ +
Sbjct: 386 TYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEI 445

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           N       + T N LL   G++ +  E   +F ++K   F P   T+  L+  + R  + 
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  V+  M+D G  PD+  +N +L  L + G    + K+   M+     PN  +Y  +
Sbjct: 506 EQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSL 565

Query: 425 IWKFCKQNA---------AVYTCLITGFGNRRRMDIVY----DLLKEME-------ERGC 464
           +  +               VY+ +I       +  ++     DLL E E       ERG 
Sbjct: 566 LHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGF 625

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  T N+++ +   ++M  +A  +   M   GF P++ TYN +M  + ++ ++    +
Sbjct: 626 SPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEE 685

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +  E++ +G  PD  SY  +I       R  +A +   EM + G+   V+ YN F
Sbjct: 686 ILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTF 740



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           KGL   + F +A+ AF    ++K           Y+       I  ++  LG+      A
Sbjct: 143 KGLGFHKKFDLALCAFDWFMKQKD----------YQSMLDNSVIAIVISMLGKEGRVSSA 192

Query: 334 QLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
             LF+ L+   F+ ++ +YT L+  +       EA  V+ +M ++G KP ++ +N++L  
Sbjct: 193 ANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNV 252

Query: 393 LLKIGKRSDAI-KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
             K+G   + I  L E MK+ G +P+  +Y  +I           TC   G  ++    +
Sbjct: 253 FGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI-----------TCCKRGSLHQEAAQV 301

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
                +EM+  G   D +TYNAL+ +      P EA+++  EM  +GF P+I TYN ++ 
Sbjct: 302 ----FEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLIS 357

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           +Y + G  +   ++ ++M  +G  PD  +YT L+ G     +   A    EEM   G K 
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKP 417

Query: 572 PVLDYNKF 579
            +  +N F
Sbjct: 418 NICTFNAF 425



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF+ +  TYNS++S   R    +  + +  +M EKG    + T+   ++ F  A + + A
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + IFE M     K  + T N  ++  G      +   +FD++     +P++ T+  LL  
Sbjct: 404 MNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAV 463

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +     E   V+ EM   GF P+    N ++    + G    A+ ++  M   G +P+
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD 523

Query: 418 VRSYTIMI--------WKF------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  ++        W+             CK N   Y  L+  + N + + +++ L +
Sbjct: 524 LSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAE 583

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+      P  +    L+ +     +  EA R + E+   GF P I T N ++  Y +  
Sbjct: 584 EVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQ 643

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                 +V D M  RG  P   +Y  L+         G++ + L E+L KG+K  ++ YN
Sbjct: 644 MVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  R  R      +  +MR SG
Sbjct: 704 TVIYAYCRNTRMRDASRIFSEMRDSG 729



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 159/370 (42%), Gaps = 52/370 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + +  T+N+++++ G+      +  + +EM   G +   ETF   ++A++     ++A
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + ++  M        + T N +L  L R  + ++++ +  +++  R  PN  TY  LL  
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 358 WCRVKN-----------------------------------LMEAGRVWNEMIDKGFKPD 382
           +   K                                    L EA R ++E+ ++GF PD
Sbjct: 569 YANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPD 628

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +   N M+    +      A ++ + MK +G +P++ +Y  +++   +            
Sbjct: 629 ITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRS---------AD 679

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           FG         ++L+E+  +G  PD ++YN +I          +A RI+ EM  SG  P 
Sbjct: 680 FGKSE------EILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPD 733

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TYN  + SY     +E    V   MI+ GC P+ N+Y  ++ G    +R  EA  ++E
Sbjct: 734 VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVE 793

Query: 563 EMLEKGMKAP 572
           ++      AP
Sbjct: 794 DLRNLDPHAP 803



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 140/326 (42%), Gaps = 50/326 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF+H+  TYN+++ + G++ + +  + +L EM   G                        
Sbjct: 309 GFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNG------------------------ 344

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGW 358
                     F   + T N L+    R  +  EA  L +++  + T P++ TYT LL G+
Sbjct: 345 ----------FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            R   +  A  ++ EM + G KP++   N  ++     GK  D +K+F+ +   G SP+ 
Sbjct: 395 ERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPD- 453

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
               I+ W            L+  FG       V  + KEM+  G  P+  T+N LI   
Sbjct: 454 ----IVTW----------NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY 499

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                 ++A+ +Y+ M+ +G  P + TYN ++ +  + G +E   KV  EM    C P++
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEM 564
            +Y  L+    +    G  +   EE+
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEV 585



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 1/171 (0%)

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
           +V   +I+  G   R+    +L   ++E G   D  +Y +LI          EAV ++K+
Sbjct: 174 SVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKK 233

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           M   G KPT+ TYN+I+  + + G  +     + ++M   G  PD  +Y  LI       
Sbjct: 234 MEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGS 293

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              EA +  EEM   G     + YN       ++ R     ++  +M  +G
Sbjct: 294 LHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNG 344


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 172/366 (46%), Gaps = 16/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G   +  TY SM+ +L +  + +  V + E+M + + +     +   +  + +A +  +A
Sbjct: 298 GLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEA 357

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            ++ E          V   NC+L  LG+     EA   F+++K    PNL+TY VL+   
Sbjct: 358 YSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDML 417

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   +  A +V + M + G  P+V+  NIM++ L K  K  +A  +FE M  K  SP+ 
Sbjct: 418 CKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDE 477

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +       FC         LI G G + R+D  Y L ++M +    P+ + Y +LIK  
Sbjct: 478 VT-------FCS--------LIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSF 522

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                 ++  +I+KEM+  G  P +   N  M   F+ G    GR +++E+  RG  PD 
Sbjct: 523 FKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDV 582

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            SY++LI GL+    + E Y+    M E+G       YN F     ++G+     +L ++
Sbjct: 583 MSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEE 642

Query: 599 MRFSGK 604
           M+  G+
Sbjct: 643 MKTKGR 648



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 158/362 (43%), Gaps = 17/362 (4%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+  Y S++    +  + E    + +EM  +G    +      M+    A E  K  A+F
Sbjct: 511 NAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALF 570

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E +    F   V + + L+  L ++   +E   LF  +K +    +   Y   + G+C+ 
Sbjct: 571 EEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKS 630

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A ++  EM  KG +P VV +  +++GL KI +  +A  LFE  K+ G   NV   
Sbjct: 631 GKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNV--- 687

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                        +Y+ LI GFG   R+D  Y +++E+ ++G  P+  T+N L+  +   
Sbjct: 688 ------------VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 735

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +  +EA+  ++ M      P   TY++++    +   +      W EM ++G  P+  +Y
Sbjct: 736 EEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITY 795

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           T +I GL       EA    E     G       YN     LS + R+    ++ ++ R 
Sbjct: 796 TTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRM 855

Query: 602 SG 603
            G
Sbjct: 856 KG 857



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 183/448 (40%), Gaps = 58/448 (12%)

Query: 159 DGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVL 218
           D +N E+   S + K   D      VCK++ E  +   ++E  L     +   +LV+ VL
Sbjct: 49  DADNHENWTKSGTAKEVVDD-----VCKIL-ESGNWGPDVENALSLFVESPKTDLVIGVL 102

Query: 219 ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
            R +   + A  +F W   K   A     Y+S++ ++ +  +F+    +L EM   G   
Sbjct: 103 RRAKDVNQ-AISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGP 161

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
                I +              I   +   K + G D I C+                  
Sbjct: 162 STKTCIEL--------------ILSCIKSNKLREGFDLIQCMR----------------- 190

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
             K +F P  + YT L+G    V+       ++++M + G++  V     ++    + G+
Sbjct: 191 --KFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGR 248

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A+ L + MK+     N     I+++  C          I  FG   ++D+ +    E
Sbjct: 249 LDAALSLLDEMKS-----NCLHADIVLYNVC----------IDCFGKAGKVDMAWKFFHE 293

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++  G  PD +TY ++I ++      DEAV I+++M ++   P  + YN ++  Y   G 
Sbjct: 294 IKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGK 353

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YN 577
           ++    + +    RGC P   +Y  ++  L  + R GEA +  EEM  K   AP L  YN
Sbjct: 354 FDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM--KKDAAPNLSTYN 411

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF 605
                L +AG      ++   M+ +G F
Sbjct: 412 VLIDMLCKAGEVEAAFKVRDAMKEAGLF 439



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 136/297 (45%), Gaps = 17/297 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           GF  +  +Y+ ++  L +A        +   M E+G +L    +   ++ F  + +  KA
Sbjct: 577 GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKA 636

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + E M     +  V T   +++ L +     EA +LF++ K      N+  Y+ L+ G
Sbjct: 637 YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDG 696

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +V  + EA  +  E++ KG  P+V   N +L+ L+K  + ++A+  F+ MK    +PN
Sbjct: 697 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPN 756

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y+I+I   C+                R+ +  +   +EM+++G  P+ +TY  +I  
Sbjct: 757 HITYSILINGLCRV---------------RKFNKAFVFWQEMQKQGLKPNTITYTTMIAG 801

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +       EA  +++    +G  P   +YN I++    +       K+++E   +GC
Sbjct: 802 LAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGC 858


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 177/365 (48%), Gaps = 21/365 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
            F  F  AGD  GF  +  + N ++S L +  +   M  +  EM ++ + L++ +F I +
Sbjct: 104 GFEAFKRAGDY-GFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVV 162

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN---LGR-SKLPKEAQLLFDKLKH 342
           N      +  +A  + E M  +     V T N L++    +GR  K+ K   +L + +  
Sbjct: 163 NGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK 222

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
              PN  TY +L+ G+C+ +N+  A RV+ EM  +G +P+VV +NI++ GL   GK  +A
Sbjct: 223 GICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEA 282

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           + L + M +    PNV ++ ++I  FCK                + ++   +L  +ME++
Sbjct: 283 VALRDQMVSSDLEPNVVTHNVLINGFCKN---------------KTVNEAINLFNDMEKQ 327

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  P+ +TY  LI         ++A  +Y  M+  G  P + TYN ++    + G+ +  
Sbjct: 328 GVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAA 387

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R + +EM+ +    D  +Y +LI  L  +  S +A K L+EM EKG+    + YN     
Sbjct: 388 RSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDG 447

Query: 583 LSRAG 587
             R G
Sbjct: 448 YCREG 452



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 41/354 (11%)

Query: 240 GFAHNSRTYNSMMS---ILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           G + N  TYN+++     +GR  +     ++L+EM  KG+   E T+ I ++ F   +  
Sbjct: 185 GVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENV 244

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
             A+ +F  M +   +  V T N L+  L       EA  L D++      PN+ T+ VL
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+ K + EA  ++N+M  +G  P+ + +  +++   K G+  DA  L+ +M  +G 
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGI 364

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P V +Y  +I   C++                    +   Y  LI     +        
Sbjct: 365 FPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVK 424

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LL EM E+G  P  +TYN L+     +     A+ +   M R G +  + T+N+++K + 
Sbjct: 425 LLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFC 484

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
             G  E    + +EM+ RG  P+  +Y ++                 EEM+EKG
Sbjct: 485 LKGRLEDANGLLNEMLERGLVPNRTTYEII----------------KEEMMEKG 522



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 119/302 (39%), Gaps = 58/302 (19%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL--------- 394
           F  N     +L+  + R   ++     +    D GFK  +++ N +L GL+         
Sbjct: 81  FCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDME 140

Query: 395 --------------------------KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
                                     K+GK + A  + E MK  G SPNV +Y  +I  +
Sbjct: 141 FVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGY 200

Query: 429 CKQ-----------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           CK                        N   Y  LI GF     +     +  EM+ +G  
Sbjct: 201 CKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLR 260

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYN LI  +      DEAV +  +MV S  +P + T+N+++  + +         +
Sbjct: 261 PNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINL 320

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +++M ++G  P+  +YT LI       R  +A+     M+++G+   V  YN   A L R
Sbjct: 321 FNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCR 380

Query: 586 AG 587
            G
Sbjct: 381 KG 382



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 2/190 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           +K G   N+ TY +++    +  + E   ++   M ++G+   + T+   +       + 
Sbjct: 325 EKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDV 384

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           K A ++   M   K  A V T N L+++L +    ++A  L D++  +   P+  TY  L
Sbjct: 385 KAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTL 444

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+CR  NL  A  V   M  KG + +VV HN++++G    G+  DA  L   M  +G 
Sbjct: 445 MDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGL 504

Query: 415 SPNVRSYTIM 424
            PN  +Y I+
Sbjct: 505 VPNRTTYEII 514



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 22/177 (12%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAM 286
           AF  +    D+  F   S TYN +++ L R    +   S++ EM  K L + + T+ I +
Sbjct: 352 AFALYNMMIDRGIFPEVS-TYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILI 410

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-T 345
           ++     E +KAV + + M +        T N L++   R    + A ++  +++ +   
Sbjct: 411 DSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQ 470

Query: 346 PNLTTYTVLLGGWCR----------VKNLMEAGRVWN---------EMIDKGFKPDV 383
            N+ T+ VL+ G+C           +  ++E G V N         EM++KGF PD+
Sbjct: 471 ANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDI 527



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +Y+EM++   +  + ++N+++    + G       V ++M   G  P+  +Y  LI G  
Sbjct: 142 VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYC 201

Query: 550 SQDRSGEAYK---YLEEMLEKGMKAPVLDYN----KFAADLSRAGRSYVLDELAQK 598
              R G+ YK    L+EM+ KG+    + YN     F  D + +G   V  E+ ++
Sbjct: 202 KMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQ 257


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +F+    +++EM  KG +    T+   +     A + +KA  +F+ M        V T  
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++ L ++AQ LF++++    +P + TYT L+  + + K + +A  +++ M+D 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G +P+ V +  +++GL K G  S A +++  +     S +   Y       C+       
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP-----CEDRHTLAP 442

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   Y  L+ G     ++D  ++LL  M   GC P+ + Y+ALI         D A  ++
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M + G+ P++HTY  ++   F+ G  ++  KV  +M++  C P+  +YT +I GL   
Sbjct: 503 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 562

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMR 600
             S +A K L  M EKG    V+ Y      L +AG+    LD   Q  R
Sbjct: 563 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSR 612



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 164/380 (43%), Gaps = 39/380 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  +  TYN+++ +L  A Q +    + +EM E G   M+ F +   A A  KE + A 
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESG-FCMDRFTVGCFAHALCKEGRWAD 93

Query: 300 AIFELMNKYKFKAGVDTINC--LLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           A+ +++ +  FK  +DT+ C  ++  L  +    EA     +++ +   PN+ TY  LL 
Sbjct: 94  AL-DMIEREDFK--LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 150

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ + K L    R+ N M+ +G  P+    N ++         + A KL   M   G  P
Sbjct: 151 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 210

Query: 417 NVRSYTIMIWKFCKQ-----------------------------NAAVYTCLITGFGNRR 447
               Y I I   C Q                             N A +   + G G   
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG--- 267

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           + D  + L+KEM  +G  PD  TY+ +I  +      ++A  +++EM   G  P ++TY 
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++ S+ + G  E  + +++EM   GC P   +YT LI   +   +  +A      M++ 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 568 GMKAPVLDYNKFAADLSRAG 587
           G +   + Y      L +AG
Sbjct: 388 GCRPNDVTYGALVDGLCKAG 407



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 156/355 (43%), Gaps = 28/355 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMN 287
           F F C   D+   A N  TY +++  L +A + +    +L+ M   G       +   ++
Sbjct: 430 FYFPC--EDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTP 346
            F  A +   A  +F  M K  +   V T   L++ + +  +L    ++L   LK   TP
Sbjct: 488 GFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTP 547

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ TYT ++ G CR+    +A ++ + M +KG  P+VV +  +++GL K GK   ++ LF
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 407 EVMKAKGPSPNVRSYTIMIWKFC---------------KQN-----AAVYTCLITGFGNR 446
             M  KG SPN  +Y ++I   C               KQ         Y C I GF   
Sbjct: 608 TQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM--VRSGFKPTIH 504
               +   +L+EME  G  P    Y  LI         + A+ ++KEM  V S  K    
Sbjct: 668 FIASL--GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDND 725

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            Y  ++++       E   +++ EM RRG  P+ + +  LI GL+   +  EA +
Sbjct: 726 MYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQ 780



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 33/262 (12%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C V    +A ++  EM+ KGF PD   ++ ++  L    K   A  LF+ MK  G +P+V
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KL 477
            +YTI+I  FCK           G   + +      L +EM   GC P  +TY ALI   
Sbjct: 324 YTYTILIDSFCK----------AGLIEQAQW-----LFEEMRSVGCSPTVVTYTALIHAY 368

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI------- 530
           +K +++P +A  I+  MV +G +P   TY  ++    + GN     +V+ ++I       
Sbjct: 369 LKAKQVP-QANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 427

Query: 531 ---------RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
                    R    P+  +Y  L+ GL    +   A++ L+ ML  G +   + Y+    
Sbjct: 428 SDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
              +AG+     E+  +M   G
Sbjct: 488 GFCKAGKIDSAQEVFLQMTKCG 509



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 140/364 (38%), Gaps = 61/364 (16%)

Query: 127 HNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCK 186
           H L   +L S C     V     D     G+ D   S  E+     K    P  +     
Sbjct: 464 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKID---SAQEVFLQMTKCGYLP-SVHTYTS 519

Query: 187 VIDELFS---LDRNM----EAVLDECGINL-SHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           +ID +F    LD  M    + + D C  N+ ++  ++D L R   + + A +      +K
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK-ALKLLSLMEEK 578

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
            G + N  TY +++  LG+A + +  + +  +M  KG   +  T+++ +N   AA    K
Sbjct: 579 -GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDK 637

Query: 298 A---------------------------------VAIFELMNKYKFKAGVDTINCLLENL 324
           A                                 + I E M  Y           L++  
Sbjct: 638 ARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCF 697

Query: 325 ---GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
              GR ++  E      ++      +   Y  L+   C    + EA R+++EM  +GF P
Sbjct: 698 SKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 757

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKL-FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           ++     +++GL+++ K  +A++L + +    G    + SYT  I+ F       +  ++
Sbjct: 758 ELSVFVCLIKGLVEVKKWDEALQLCYGICHEVGL---LLSYTTQIFLF------TFVVIV 808

Query: 441 TGFG 444
            G+G
Sbjct: 809 VGYG 812


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 189/404 (46%), Gaps = 59/404 (14%)

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           +GR +    ++ +LEE G   ++   ++ + +NA+  + E ++A+ + +  +     A  
Sbjct: 117 IGRTKNATRIMGILEESG--AVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATY 174

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           D + C L +  R KL +  Q+L  +L+ +  P++ T TVL+   C+   + +A +++NEM
Sbjct: 175 DAVLCSLCD--RGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM 232

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGK---------------------------RS------- 400
             KG KPDVV +N++++G  K G+                           RS       
Sbjct: 233 RGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRW 292

Query: 401 -DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            DA+KL   M  KG  P+V ++ I+I   C++                    N+  +  L
Sbjct: 293 MDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 352

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I GF NR+ +D   + L+ M  RGC PD +TYN L+  +      D+AV I  ++   G 
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 412

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P++ +YN ++    + G  E+  ++ +EM  +G  PD  + T ++GGL  + +  EA K
Sbjct: 413 SPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIK 472

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +   +   G+K     YN     L +A ++ +  +    M  +G
Sbjct: 473 FFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANG 516



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 147/325 (45%), Gaps = 17/325 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN ++    +  + +  +  L+++   G  S + +  + + +  +      A+ +   M
Sbjct: 243 TYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATM 302

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            +      V T N L+  L +  L  +A  + + + KH  TPN  ++  L+ G+C  K +
Sbjct: 303 LRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGI 362

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A      M+ +G  PD+V +NI+L  L K GK  DA+ +   + +KG SP++ SY  +
Sbjct: 363 DRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 422

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I    K   A               ++  +LL+EM  +G  PD +T  +++  +  +   
Sbjct: 423 IDGLLKVGKA---------------ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKV 467

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA++ +  +   G KP    YN IM    +     +      +M+  GC P + SYT L
Sbjct: 468 HEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTL 527

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGM 569
           I G+  +  + EA K   E+  +G+
Sbjct: 528 IKGITYEGLAEEASKLSNELYSRGL 552



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 21/202 (10%)

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L++ G+  +  +  E M  KG  P+V + T +I +FCK         I G          
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGI--------- 129

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
                 +EE G   D  +YN LI         +EA+R+   +  +   P   TY+ ++ S
Sbjct: 130 ------LEESGAVIDANSYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCS 180

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
               G  +   +V D  ++  C PD  + TVLI     +   G+A K   EM  KG K  
Sbjct: 181 LCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPD 240

Query: 573 VLDYNKFAADLSRAGRSYVLDE 594
           V+ YN       + GR   LDE
Sbjct: 241 VVTYNVLIKGFCKEGR---LDE 259


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +F+    +++EM  KG +    T+   +     A + +KA  +F+ M        V T  
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 319 CLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++ L ++AQ LF++++    +P + TYT L+  + + K + +A  +++ M+D 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G +P+ V +  +++GL K G  S A +++  +     S +   Y       C+       
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP-----CEDRHTLAP 442

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   Y  L+ G     ++D  ++LL  M   GC P+ + Y+ALI         D A  ++
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M + G+ P++HTY  ++   F+ G  ++  KV  +M++  C P+  +YT +I GL   
Sbjct: 503 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 562

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMR 600
             S +A K L  M EKG    V+ Y      L +AG+    LD   Q  R
Sbjct: 563 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSR 612



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 164/380 (43%), Gaps = 39/380 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  +  TYN+++ +L  A Q +    + +EM E G   M+ F +   A A  KE + A 
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESG-FCMDRFTVGCFAHALCKEGRWAD 93

Query: 300 AIFELMNKYKFKAGVDTINC--LLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           A+ +++ +  FK  +DT+ C  ++  L  +    EA     +++ +   PN+ TY  LL 
Sbjct: 94  AL-DMIEREDFK--LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 150

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ + K L    R+ N M+ +G  P+    N ++         + A KL   M   G  P
Sbjct: 151 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 210

Query: 417 NVRSYTIMIWKFCKQ-----------------------------NAAVYTCLITGFGNRR 447
               Y I I   C Q                             N A +   + G G   
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG--- 267

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           + D  + L+KEM  +G  PD  TY+ +I  +      ++A  +++EM   G  P ++TY 
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++ S+ + G  E  + +++EM   GC P   +YT LI   +   +  +A      M++ 
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 568 GMKAPVLDYNKFAADLSRAG 587
           G +   + Y      L +AG
Sbjct: 388 GCRPNDVTYGALVDGLCKAG 407



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 28/365 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMN 287
           F F C   D+   A N  TY +++  L +A + +    +L+ M   G       +   ++
Sbjct: 430 FYFPC--EDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTP 346
            F  A +   A  +F  M K  +   V T   L++ + +  +L    ++L   LK   TP
Sbjct: 488 GFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTP 547

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ TYT ++ G CR+    +A ++ + M +KG  P+VV +  +++GL K GK   ++ LF
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 407 EVMKAKGPSPNVRSYTIMIWKFC---------------KQN-----AAVYTCLITGFGNR 446
             M  KG SPN  +Y ++I   C               KQ         Y C I GF   
Sbjct: 608 TQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM--VRSGFKPTIH 504
               +   +L+EME  G  P    Y  LI         + A+ ++KEM  V S  K    
Sbjct: 668 FIASL--GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDND 725

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            Y  ++++       E   +++ EM RRG  P+ + +  LI GL+   +  EA +    +
Sbjct: 726 MYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGI 785

Query: 565 LEKGM 569
             +G+
Sbjct: 786 CHEGV 790



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 33/262 (12%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C V    +A ++  EM+ KGF PD   ++ ++  L    K   A  LF+ MK  G +P+V
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KL 477
            +YTI+I  FCK           G   + +      L +EM   GC P  +TY ALI   
Sbjct: 324 YTYTILIDSFCK----------AGLIEQAQW-----LFEEMRSVGCSPTVVTYTALIHAY 368

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI------- 530
           +K +++P +A  I+  MV +G +P   TY  ++    + GN     +V+ ++I       
Sbjct: 369 LKAKQVP-QANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 427

Query: 531 ---------RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
                    R    P+  +Y  L+ GL    +   A++ L+ ML  G +   + Y+    
Sbjct: 428 SDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
              +AG+     E+  +M   G
Sbjct: 488 GFCKAGKIDSAQEVFLQMTKCG 509


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 161/326 (49%), Gaps = 17/326 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N F  A++ ++A  + + M K          N +++ L  +     A + +  +
Sbjct: 35  TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM 94

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           +    P++ TYT+L+   C+   + +A  +  +MI+ G  P+VV +N ++ G  K+G   
Sbjct: 95  QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMD 154

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +A+ LF  M     SP+V +Y I+I  +CKQ               R  D    LL+EM 
Sbjct: 155 EAVVLFNQMLENSCSPDVFTYNILIDGYCKQ--------------ERPQDGA-KLLQEMV 199

Query: 461 ERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           + GC P+ +TYN L+  L+K  K  D A  + + M+R   KP+  T+N+++  + + G  
Sbjct: 200 KYGCEPNFITYNTLMDSLVKSGKYID-AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQL 258

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           ++  +++  M  RGC PD  +Y ++I G    +R  +A + LE M E G    V+ YN  
Sbjct: 259 DLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSI 318

Query: 580 AADLSRAGRSYVLDELAQKMRFSGKF 605
            + L +A +     E+ + +R  G F
Sbjct: 319 VSGLCKASQVDEAYEVYEVLRNGGYF 344



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 184/401 (45%), Gaps = 56/401 (13%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-------------------------- 277
           +S TY+++++   +AR F+    +L+EM ++G++                          
Sbjct: 32  DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 91

Query: 278 ---------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
                    S+ T+ I ++A   +     A  I E M +      V T N L+    +  
Sbjct: 92  RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLG 151

Query: 329 LPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              EA +LF++ L++  +P++ TY +L+ G+C+ +   +  ++  EM+  G +P+ + +N
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN 211

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK----------------- 430
            +++ L+K GK  DA  L ++M  +   P+  ++ +MI  FCK                 
Sbjct: 212 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 271

Query: 431 ---QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               +   Y  +I+G     R+D    LL+ M E GCPPD +TYN+++  +      DEA
Sbjct: 272 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 331

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             +Y+ +   G+   + T + ++    ++   +   K+  EM R G  PD  +YT+LI G
Sbjct: 332 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 391

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
               D+  ++  +  EML+KG    V+ Y+     L ++ R
Sbjct: 392 FCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 432



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 36/210 (17%)

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-------- 476
           +   C  ++  Y+ LI GF   R     Y LL EME+RG  P    YN +IK        
Sbjct: 25  LCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRV 84

Query: 477 ---------------------------LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
                                      L K  ++ D ++ I ++M+ +G  P + TYN +
Sbjct: 85  DSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASL-ILEDMIEAGCAPNVVTYNTL 143

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + + GN +    ++++M+   C PD  +Y +LI G   Q+R  +  K L+EM++ G 
Sbjct: 144 INGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 203

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +   + YN     L ++G+      LAQ M
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMM 233


>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g43820-like [Cucumis sativus]
          Length = 572

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 174/393 (44%), Gaps = 22/393 (5%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L    + LS ++V  VL            FF WA  +P    ++ +YN ++  LGR
Sbjct: 131 IEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALGR 190

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
              F++M+ +L  M  +G+  ++E   I +++     +  KA+  F  + +   K   +T
Sbjct: 191 RGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTET 250

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +N LL+ + R      A   F+  K     N+ TY +++GGW R     E  ++   M  
Sbjct: 251 LNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAMEL 310

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------- 428
            GF PD + H  ++E L +  +  DA+K+F+ M   G +P+V +Y  MI  F        
Sbjct: 311 DGFSPDCLTHTYLIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQ 370

Query: 429 ------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C+ +   Y+ LITGF   +++    ++  EM  R  P  G    + I+
Sbjct: 371 CLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVARIIPTTG-AITSFIQ 429

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L      P  A+ IYK+  + G + + + Y +++      G + M   +W+EM   G  P
Sbjct: 430 LSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDP 489

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           D  +Y   I  L    +   A   +EE L +G 
Sbjct: 490 DVETYEHAIDCLCKTGQLENAVLVMEECLRQGF 522



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 118/290 (40%), Gaps = 25/290 (8%)

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN------LGRSKLPKEAQLLFD 338
           A++ F   +E+ + V + +L  K   +  +   + +L        L    L  EA + F 
Sbjct: 106 AVDGFLLPEEKLRGVFLQKLNGKTAIEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFF 165

Query: 339 --KLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
              +K    P + ++Y ++L    R         V   M  +G +  +   +I+++ L+K
Sbjct: 166 YWAIKQPSIPKDASSYNIILKALGRRGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVK 225

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
             + S A++ F  +K  G   +  +  I++   C+++   +      F N  + +I +++
Sbjct: 226 GHQVSKALQFFRNLKEIGLKCDTETLNILLQCMCRRS---HVGAANSFFNLTKGNIPFNV 282

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           +             TYN +I          E  ++ K M   GF P   T+  +++   +
Sbjct: 283 M-------------TYNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGR 329

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
               +   K++D+M   GC PD ++Y  +I   I      +   Y E ML
Sbjct: 330 ANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERML 379



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 72/163 (44%), Gaps = 11/163 (6%)

Query: 431 QNAAVYTCLITGFGNR----RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           ++A+ Y  ++   G R      MD++Y++ +E  E       +  ++L+K  ++ K    
Sbjct: 176 KDASSYNIILKALGRRGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSK---- 231

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP-DDNSYTVLI 545
           A++ ++ +   G K    T N++++   +  +       ++  + +G  P +  +Y ++I
Sbjct: 232 ALQFFRNLKEIGLKCDTETLNILLQCMCRRSHVGAANSFFN--LTKGNIPFNVMTYNIVI 289

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           GG     R GE  + L+ M   G     L +      L RA +
Sbjct: 290 GGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQ 332


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 25/359 (6%)

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERK-KAVAIF-ELMNKYKFKAGVDTINCLLE 322
           S+L      GL  +  TF I    FA +  R   AV  F  L   +     +   N LL+
Sbjct: 125 SILALFPRHGLAFTPRTFPIMFERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNSLLD 184

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            L +S+   +A  L   L+ RF P+  TY  L  GWCRVK+   A  +  +M++ G  P 
Sbjct: 185 ALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPT 244

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
              +NI+L+G  + G+   A   F  MK +G +           + CK +   YT ++ G
Sbjct: 245 KTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSND----------ENCKPDVVSYTTVLHG 294

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
            G   ++D    +  EM   GC P   TYNALI++   +   ++AV ++ +M+R G+ P 
Sbjct: 295 LGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPN 354

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TY ++++     G  +   K+ D+M R GC P+  +Y VLIG L  +    +A    E
Sbjct: 355 VVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFE 414

Query: 563 EMLEKGMKAPVLD-YN---------KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
            M +     P  D YN         K A D++ A R  V  E+  +     +F  + VL
Sbjct: 415 TMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVV--EMVDRGYLPRRFMFNRVL 471



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 174/386 (45%), Gaps = 31/386 (8%)

Query: 194 LDRNMEAVLDECGINLSHNLVVDVLERFRHA-RRP--AFRFFCWAGDKPGFAHNSRTYNS 250
           L  ++ A+    G+  +      + ERF  + RRP  A RFF       G A +   +NS
Sbjct: 122 LTSSILALFPRHGLAFTPRTFPIMFERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNS 181

Query: 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++  L ++R      S++  +  +      T+    + +   K+  +A+ I   M +   
Sbjct: 182 LLDALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGI 241

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT------PNLTTYTVLLGGWCRVKNL 364
                T N +L+   RS   + A   F ++K R +      P++ +YT +L G      L
Sbjct: 242 APTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQL 301

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A +V++EM  +G  P +  +N +++   K G   DA+ +F+ M  KG  PNV +YT++
Sbjct: 302 DKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVL 361

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C                  ++D    LL +M+  GC P+  TYN LI  +  +   
Sbjct: 362 IRGLCHAG---------------KIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDI 406

Query: 485 DEAVRIYKEMVR-SGFKPTIHTYNMIMKSYF---QTGNYEMGRKVWDEMIRRGCCPDDNS 540
           ++A+ +++ M +     P   TYN+I+ + F   +  +  +  ++  EM+ RG  P    
Sbjct: 407 EKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFM 466

Query: 541 YTVLIGGLI---SQDRSGEAYKYLEE 563
           +  ++ GL+   +Q+ S E  +  E+
Sbjct: 467 FNRVLNGLMLTGNQELSRELLRMQEK 492


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 192/423 (45%), Gaps = 61/423 (14%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           VL     A  P+ R F  +  + G A N  TYN ++  L    + E  V ++ +M   G 
Sbjct: 124 VLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGC 183

Query: 277 L-SMETFKIAMNAFAAAKERKKAVAIFELMNKY-KFKAGVDTINCLLENLGRSKLPKEAQ 334
             +  T+   + AF  A E   A  +  LM +    K  + T N ++  L ++   + A+
Sbjct: 184 APNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGAR 243

Query: 335 LLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            +FD++ +    P++ +Y  LL G+C+V  L E+  V++EM  +G  PDVV    ++   
Sbjct: 244 KVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 303

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
            K G    A+ L   M+ +G   N  ++T +I  FCK+                    + 
Sbjct: 304 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 363

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEME--------------------------------- 460
             Y  LI G+    RMD+  +L++EME                                 
Sbjct: 364 VCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 423

Query: 461 --ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             ++G  PD +TY++LI+ +  +K  ++A  +++ M++ G +P   TY  ++  + + GN
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 483

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E    + DEMIR+G  PD  +Y+VLI GL    R+ EA++ L ++  +    PV D  K
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED---PVPDNIK 540

Query: 579 FAA 581
           + A
Sbjct: 541 YDA 543



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 168/363 (46%), Gaps = 19/363 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+A +   YN+++  L  A    +    L  M   G+  ++ T+ I + A  A    ++A
Sbjct: 113 GYAPSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLG 356
           V +   M          T N L+    R+     A+ +   ++      PNL T+  ++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   +  A +V++EM+ +G  PDVV++N +L G  K+G   +++ +F  M  +G  P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V ++T +I   CK             GN   ++    L+ +M ERG   + +T+ ALI 
Sbjct: 292 DVVTFTSLIHATCKA------------GN---LEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               +   D+A+   +EM + G +P++  YN ++  Y + G  ++ R++  EM  +   P
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  +Y+ +I G         A++  ++ML+KG+    + Y+     L    R     EL 
Sbjct: 397 DVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456

Query: 597 QKM 599
           + M
Sbjct: 457 ENM 459



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 164/365 (44%), Gaps = 41/365 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+ S++    +A   E  V+++ +M E+GL   E TF   ++ F        A
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +   E M K   +  V   N L+     LGR  L +E  L+ +    R  P++ TY+ ++
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE--LIREMEAKRVKPDVVTYSTII 405

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+V NL  A ++  +M+ KG  PD + ++ ++ GL +  + +DA +LFE M   G  
Sbjct: 406 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQ 465

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +YT +I   CK+                    +   Y+ LI G     R    + L
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525

Query: 456 LKEMEERGCPPDGLTYNAL------------IKLMK---IQKMPDEAVRIYKEMVRSGFK 500
           L ++      PD + Y+AL            + L+K   ++ +  EA ++Y+ M+   +K
Sbjct: 526 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 585

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
                Y++++  + + GN         +M+R G  P+  S   L+ GL  +    EA   
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNA 645

Query: 561 LEEML 565
           ++++L
Sbjct: 646 IQDLL 650



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 17/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+ P V A+N +L  L      S A +    M   G +PNV +Y I++   C        
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCA------- 164

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                   R R++    ++ +M   GC P+ +TYN L+         D A R+   M   
Sbjct: 165 --------RGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216

Query: 498 G-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
           G  KP + T+N ++    + G  E  RKV+DEM+R G  PD  SY  L+ G        E
Sbjct: 217 GNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +     EM ++G+   V+ +        +AG       L  +MR  G
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 4/301 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +   YN++++   +  + +    ++ EM  K +   + T+   ++ +       
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD 415

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A  + + M K        T + L+  L   K   +A  LF+  L+    P+  TYT L+
Sbjct: 416 SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+  N+ +A  + +EMI KG  PDVV +++++ GL K  +  +A +L   +  + P 
Sbjct: 476 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+   Y  ++    K        L+ GF  +  M     + + M +R    DG  Y+ LI
Sbjct: 536 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 595

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     +A+  +K+M+RSGF P   +   +++  F+ G          +++   CC
Sbjct: 596 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLT--CC 653

Query: 536 P 536
           P
Sbjct: 654 P 654



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           ++ALI+       P  A         +G+ P++  YN ++ +     +    R+    M+
Sbjct: 86  FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLA-LSDASLPSARRFLSSML 144

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           R G  P+  +Y +L+  L ++ R  EA   + +M   G     + YN   A   RAG   
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204

Query: 591 VLDELAQKMRFSG 603
             + +   MR  G
Sbjct: 205 GAERVVSLMREEG 217


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 9/350 (2%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +FE    +++EM  KG +    T+   +     AK   KA  +F+ M K      V T  
Sbjct: 432 KFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYT 491

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++ L ++AQ  FD+++    +PN+ TYT LL  + + K L +A  +++ M+  
Sbjct: 492 ILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGD 551

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK---FCKQNAA 434
              P+ + ++ +++GL K G+   A +++   K  G S N+ S      K       N  
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYA--KLIGTSDNIESDFYFEGKDTDTISPNVV 609

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKE 493
            Y  L+ G    +++   +DLL  M   GC P+ + Y+AL+    K+ ++ D A  ++  
Sbjct: 610 TYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEI-DSAQEVFLR 668

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + G+ P++HTY  ++   F+ G  ++  KV  +M++  C P+  +YT ++ GL     
Sbjct: 669 MTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGE 728

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + +A   L  M +KG    V+ Y      L +AG+     EL  +M+  G
Sbjct: 729 TEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKG 778



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 163/380 (42%), Gaps = 39/380 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  ++ TYN+++ +L  A Q E    + +EM   G   M+   +   A A  KE +   
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGF-CMDRSTVGSFAQALCKEGRWGD 257

Query: 300 AIFELMNKYKFKAGVDTINC--LLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           A+ +L+ +  FK  +DT+ C  ++  L  + L  EA     +++ + + PN+ TY  LL 
Sbjct: 258 AL-DLLEREDFK--LDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLT 314

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ + K L    R+ N M+ +G  P     N ++         + A KLF  M   G  P
Sbjct: 315 GFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPP 374

Query: 417 NVRSYTIMIWKFC-----------------------------KQNAAVYTCLITGFGNRR 447
               Y I I   C                             K N A +   + G G   
Sbjct: 375 GYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVG--- 431

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           + +  + ++KEM  +G  PD  TY  +I  +   K  D+A  +++EM + G  P ++TY 
Sbjct: 432 KFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYT 491

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++ S+ + G  E  +  +DEM   GC P+  +YT L+   +   +  +A      M+  
Sbjct: 492 ILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGD 551

Query: 568 GMKAPVLDYNKFAADLSRAG 587
                 + Y+     L +AG
Sbjct: 552 ACYPNAITYSALIDGLCKAG 571



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 27/364 (7%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAF 289
           F+    D    + N  TY ++++ L +A++      +L+ M   G    +  +   ++ F
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGF 653

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNL 348
               E   A  +F  M K  +   V T   L++ + +  +L    ++L   LK    PN+
Sbjct: 654 CKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNV 713

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TYT ++ G C+     +A  + + M  KG  P+VV +  +++GL K GK    ++LF  
Sbjct: 714 VTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQ 773

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAV--------------------YTCLITGFGNRRR 448
           MK KG +PN  +Y I+I   C                          Y   + GF  R  
Sbjct: 774 MKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFL 833

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
             +   LL+EME     P    Y  LI         + A+ ++KEM+       + + +M
Sbjct: 834 ASL--GLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDM 891

Query: 509 ---IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
              ++++   +   E    ++ EM RRG  PD +++  L+ GLI +++  EA +    + 
Sbjct: 892 HTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGIC 951

Query: 566 EKGM 569
           ++G+
Sbjct: 952 QEGV 955



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 174/432 (40%), Gaps = 50/432 (11%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+ ++VV VL   R       RFF WA  + G+ H    Y+++  +LG      T   +L
Sbjct: 99  LTDSVVVAVLGAVRSPEL-CVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLL 157

Query: 269 EEMGEKG------LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
            E+GE        LL++   +  +          +A+     +  + ++    T N L++
Sbjct: 158 REIGEDDRDVLGRLLNVLVRRCCLQGLWG-----EALEELGRLKDFGYRPSAVTYNALVQ 212

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID----KG 378
            L  +    + ++ F   K             +G +   + L + GR W + +D    + 
Sbjct: 213 VLASAG---QVEMAFRVQKEMSASGFCMDRSTVGSF--AQALCKEGR-WGDALDLLERED 266

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF---------- 428
           FK D V    M+ GL++    ++A+     M+     PNV +Y  ++  F          
Sbjct: 267 FKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCK 326

Query: 429 ----------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KL 477
                     C  + +++  L+  + N       Y L   M   GCPP  + YN  I  +
Sbjct: 327 RIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSI 386

Query: 478 MKIQKMP-----DEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
              +++P     D A ++Y+EM V S     I+T N   +     G +E   ++  EM+R
Sbjct: 387 CGREELPNPELLDLAEKVYEEMLVASCVLNKINTAN-FARCLCGVGKFEKAFQIVKEMMR 445

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           +G  PD ++YT +I  L    R  +A+   +EM + G+   V  Y        +AG    
Sbjct: 446 KGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQ 505

Query: 592 LDELAQKMRFSG 603
                 +MR +G
Sbjct: 506 AQSWFDEMRSAG 517


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 34/388 (8%)

Query: 193 SLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-RP--AFRFFCWAGDKPGFAHNSRTYN 249
           +L   ++  L   GI+LS +L+  VL+R R +   P     F+ +A    GF H+S + +
Sbjct: 52  NLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLD 111

Query: 250 SMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +M+ ILGR R+F+ +  +L E   K   L+S  T ++ +   A     ++ V  F     
Sbjct: 112 TMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESF----- 166

Query: 308 YKFKAGV----DT--INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           +KFK  V    DT   N LL  L + K   +A+ ++  LKH+F P+L T+ +LL GW   
Sbjct: 167 WKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGW--- 223

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K+  EA   + EM  KG KPDVV +N +++   K  +   A KL + M+ +  +P+V   
Sbjct: 224 KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDV--- 280

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                         YT +I G G   + D   ++LKEM+E GC PD   YNA I+   I 
Sbjct: 281 ------------ITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIA 328

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +   +A ++  EMV+ G  P   TYN+  +      +     +++  M+   C P+  S 
Sbjct: 329 RRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSC 388

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             LI      ++   A +  E+M+ KG 
Sbjct: 389 MFLIKMFKRHEKVDMAMRLWEDMVVKGF 416



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 33/287 (11%)

Query: 316 TINCLLENLGRS-KLPKEAQLLFD-KLKHRFTPNLTTYTVLLG---GWCRVKNLMEAGRV 370
           +++ +L  LGR+ K  +  +LL + K K R   +  T  V+LG     C V+  +E+   
Sbjct: 109 SLDTMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWK 168

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--WKF 428
           +  ++   F  D    N +L  L +    +DA  ++  +K +   P+++++ I++  WK 
Sbjct: 169 FKRLVPDFF--DTACFNALLRTLCQEKSMTDARNVYHSLKHQF-QPDLQTFNILLSGWKS 225

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
            ++  A +                     EM+ +G  PD +TYN+LI +    +  ++A 
Sbjct: 226 SEEAEAFFE--------------------EMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 265

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++  +M      P + TY  ++      G  +  R+V  EM   GC PD  +Y   I   
Sbjct: 266 KLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNF 325

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVL 592
               R G+A K ++EM++KG+      YN F   LS A   GRS+ L
Sbjct: 326 CIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWEL 372



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 9/188 (4%)

Query: 417 NVRSYTIMIWKFCKQ-----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +VR      WKF +      + A +  L+      + M    ++   ++ +   PD  T+
Sbjct: 158 SVRQTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQ-FQPDLQTF 216

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N L+   K  +    A   ++EM   G KP + TYN ++  Y +    E   K+ D+M  
Sbjct: 217 NILLSGWKSSEE---AEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMRE 273

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
               PD  +YT +IGGL    +  +A + L+EM E G    V  YN    +   A R   
Sbjct: 274 EEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGD 333

Query: 592 LDELAQKM 599
            D+L  +M
Sbjct: 334 ADKLVDEM 341


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 16/368 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY  ++  L    +FE    +L +M EKGL+ ++ T+   +N +      
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + AV + ELM   K      T N L++   +S + K   +L   L+ +  P++ TY  L+
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLI 469

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G CR  N   A R+ + M D+G  PD   +  M++ L K  +  +A  LF+ ++ KG +
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV  YT +I  +CK                 ++D  + +L++M  + C P+ LT+NALI
Sbjct: 530 PNVVMYTALIDGYCKAG---------------KVDEAHLMLEKMLSKNCLPNSLTFNALI 574

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +       EA  + ++MV+ G +PT+ T  +++    + G+++     + +M+  G  
Sbjct: 575 HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PD ++YT  I     + R  +A   + +M E G+   +  Y+         G++    ++
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDV 694

Query: 596 AQKMRFSG 603
            ++MR +G
Sbjct: 695 LKRMRDTG 702



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 163/363 (44%), Gaps = 41/363 (11%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285
           + A  F  W    P + H+  +Y S++++L                G  G++    FKI 
Sbjct: 104 KTALNFSHWISQNPRYKHSVYSYASLLTLLINN-------------GYVGVV----FKIR 146

Query: 286 MNAFAAAKERKKAVAIFEL---MNK-----YKFKAGVDTINCLLENLGRSKLPKE-AQLL 336
           +    +      A+ + +L   MNK      K+K  +   N LL +L R  L  E  Q+ 
Sbjct: 147 LLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            + L+ +  PN+ TY  ++ G+C++ N+ EA +  +++++ G  PD   +  ++ G  + 
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQR 266

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
                A K+F  M  KG               C++N   YT LI G    RR+D   DL 
Sbjct: 267 KDLDSAFKVFNEMPLKG---------------CRRNEVAYTHLIHGLCVARRIDEAMDLF 311

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +M++  C P   TY  LIK +   +   EA+ + KEM  +G KP IHTY +++ S    
Sbjct: 312 VKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQ 371

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             +E  R++  +M+ +G  P+  +Y  LI G   +    +A   +E M  + +      Y
Sbjct: 372 CKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTY 431

Query: 577 NKF 579
           N+ 
Sbjct: 432 NEL 434



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 160/377 (42%), Gaps = 14/377 (3%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           ++ G   N   Y +++    +A + +    MLE+M  K  L    TF   ++   A  + 
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
           K+A  + E M K   +  V T   L+  L +      A   F ++    T P+  TYT  
Sbjct: 584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +CR   L++A  +  +M + G  PD+  ++ +++G   +G+ + A  + + M+  G 
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGC 703

Query: 415 SPNVRSYTIMI-----WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
            P+  ++  +I      K+ KQ  +     +    N    D V +LL++M E    P+  
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKQKGSEPE--LCAMSNMMEFDTVVELLEKMVEHSVTPNAK 761

Query: 470 TYNALIKLMKIQKMPDEAV--RIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           +Y  LI  + I ++ +  V  +++  M R+ G  P+   +N ++    +   +    KV 
Sbjct: 762 SYEKLI--LGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVV 819

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D+MI  G  P   S  VLI GL  +          + +L+ G     L +      + + 
Sbjct: 820 DDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQ 879

Query: 587 GRSYVLDELAQKMRFSG 603
           G      EL   M  +G
Sbjct: 880 GLVEAFYELFNVMEKNG 896



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 48/309 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L H L+ D    F HA    F+    +G KP    ++ TY + +    R  +      M+
Sbjct: 608 LIHRLLKD--GDFDHAYS-RFQQMLSSGTKP----DAHTYTTFIQTYCREGRLLDAEDMM 660

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            +M E G+   + T+   +  +    +   A  + + M     +    T   L+++L   
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEM 720

Query: 328 KLPKE-------------------AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
           K  K+                    +LL   ++H  TPN  +Y  L+ G C V NL  A 
Sbjct: 721 KYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAE 780

Query: 369 RVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
           +V++ M  ++G  P  +  N +L    K+ K ++A K+ + M   G  P + S  ++I  
Sbjct: 781 KVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICG 840

Query: 428 FCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
             K                    ++   +  +I G G +  ++  Y+L   ME+ GC   
Sbjct: 841 LYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFS 900

Query: 468 GLTYNALIK 476
             TY+ LI+
Sbjct: 901 SQTYSLLIE 909



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%)

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN L+  +    + DE  ++Y EM+     P I+TYN ++  Y + GN E   +   +++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
             G  PD  +YT LI G   +     A+K   EM  KG +   + Y      L  A R  
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 591 VLDELAQKMR 600
              +L  KM+
Sbjct: 306 EAMDLFVKMK 315



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           FG    M  VY  ++ +E++ CP +  TYN ++         +EA +   ++V +G  P 
Sbjct: 196 FGLVDEMKQVY--MEMLEDKVCP-NIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPD 252

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TY  ++  Y Q  + +   KV++EM  +GC  ++ +YT LI GL    R  EA     
Sbjct: 253 FFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +M +      V  Y      L  + R      L ++M  +G
Sbjct: 313 KMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +F+    +++EM  KG +    T+   +     A + +KA  +F+ M        V T  
Sbjct: 203 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 262

Query: 319 CLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++ L ++AQ LF++++    +P + TYT L+  + + K + +A  +++ M+D 
Sbjct: 263 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 322

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G +P+ V +  +++GL K G  S A +++  +     S +   Y       C+       
Sbjct: 323 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP-----CEDRHTLAP 377

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   Y  L+ G     ++D  ++LL  M   GC P+ + Y+ALI         D A  ++
Sbjct: 378 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 437

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M + G+ P++HTY  ++   F+ G  ++  KV  +M++  C P+  +YT +I GL   
Sbjct: 438 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 497

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMR 600
             S +A K L  M EKG    V+ Y      L +AG+    LD   Q  R
Sbjct: 498 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSR 547



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 28/365 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMN 287
           F F C   D+   A N  TY +++  L +A + +    +L+ M   G       +   ++
Sbjct: 365 FYFPC--EDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 422

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTP 346
            F  A +   A  +F  M K  +   V T   L++ + +  +L    ++L   LK   TP
Sbjct: 423 GFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTP 482

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ TYT ++ G CR+    +A ++ + M +KG  P+VV +  +++GL K GK   ++ LF
Sbjct: 483 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 542

Query: 407 EVMKAKGPSPNVRSYTIMIWKFC---------------KQN-----AAVYTCLITGFGNR 446
             M  KG SPN  +Y ++I   C               KQ         Y C I GF   
Sbjct: 543 TQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 602

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM--VRSGFKPTIH 504
               +   +L+EME  G  P    Y  LI         + A+ ++KEM  V S  K    
Sbjct: 603 FIASL--GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDND 660

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            Y  ++++       E   +++ EM RRG  P+ + +  LI GL+   +  EA +    +
Sbjct: 661 MYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGI 720

Query: 565 LEKGM 569
             +G+
Sbjct: 721 CHEGV 725



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 39/349 (11%)

Query: 271 MGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC--LLENLGRSK 328
           M E G   M+ F +   A A  KE + A A+ +++ +  FK  +DT+ C  ++  L  + 
Sbjct: 1   MSESGF-CMDRFTVGCFAHALCKEGRWADAL-DMIEREDFK--LDTVLCTHMISGLMEAS 56

Query: 329 LPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              EA     +++ +   PN+ TY  LL G+ + K L    R+ N M+ +G  P+    N
Sbjct: 57  YFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFN 116

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
            ++         + A KL   M   G  P    Y I I   C Q                
Sbjct: 117 SLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIY 176

Query: 432 -------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                        N A +   + G G   + D  + L+KEM  +G  PD  TY+ +I  +
Sbjct: 177 GEMLAANCVLNKVNVANFARCLCGVG---KFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 233

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                 ++A  +++EM   G  P ++TY +++ S+ + G  E  + +++EM   GC P  
Sbjct: 234 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 293

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            +YT LI   +   +  +A      M++ G +   + Y      L +AG
Sbjct: 294 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 342



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 33/262 (12%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C V    +A ++  EM+ KGF PD   ++ ++  L    K   A  LF+ MK  G +P+V
Sbjct: 199 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 258

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KL 477
            +YTI+I  FCK           G   + +      L +EM   GC P  +TY ALI   
Sbjct: 259 YTYTILIDSFCK----------AGLIEQAQW-----LFEEMRSVGCSPTVVTYTALIHAY 303

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI------- 530
           +K +++P +A  I+  MV +G +P   TY  ++    + GN     +V+ ++I       
Sbjct: 304 LKAKQVP-QANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 362

Query: 531 ---------RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
                    R    P+  +Y  L+ GL    +   A++ L+ ML  G +   + Y+    
Sbjct: 363 SDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 422

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
              +AG+     E+  +M   G
Sbjct: 423 GFCKAGKIDSAQEVFLQMTKCG 444


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 34/388 (8%)

Query: 193 SLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-RP--AFRFFCWAGDKPGFAHNSRTYN 249
           +L   ++  L   GI+LS +L+  VL+R R +   P     F+ +A    GF H+S + +
Sbjct: 53  NLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLD 112

Query: 250 SMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +M+ ILGR R+F+ +  +L E   K   L+S  T ++ +   A     ++ V  F     
Sbjct: 113 TMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESF----- 167

Query: 308 YKFKAGV----DT--INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           +KFK  V    DT   N LL  L + K   +A+ ++  LKH+F P+L T+ +LL GW   
Sbjct: 168 WKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGW--- 224

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K+  EA   + EM  KG KPDVV +N +++   K  +   A KL + M+ +  +P+V   
Sbjct: 225 KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDV--- 281

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                         YT +I G G   + D   ++LKEM+E GC PD   YNA I+   I 
Sbjct: 282 ------------ITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIA 329

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +   +A ++  EMV+ G  P   TYN+  +      +     +++  M+   C P+  S 
Sbjct: 330 RRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSC 389

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             LI      ++   A +  E+M+ KG 
Sbjct: 390 MFLIKMFKRHEKVDMAMRLWEDMVVKGF 417



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 33/287 (11%)

Query: 316 TINCLLENLGRS-KLPKEAQLLFD-KLKHRFTPNLTTYTVLLG---GWCRVKNLMEAGRV 370
           +++ +L  LGR+ K  +  +LL + K K R   +  T  V+LG     C V+  +E+   
Sbjct: 110 SLDTMLYILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWK 169

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--WKF 428
           +  ++   F  D    N +L  L +    +DA  ++  +K +   P+++++ I++  WK 
Sbjct: 170 FKRLVPDFF--DTACFNALLRTLCQEKSMTDARNVYHSLKHQF-QPDLQTFNILLSGWKS 226

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
            ++  A +                     EM+ +G  PD +TYN+LI +    +  ++A 
Sbjct: 227 SEEAEAFFE--------------------EMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 266

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++  +M      P + TY  ++      G  +  R+V  EM   GC PD  +Y   I   
Sbjct: 267 KLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNF 326

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVL 592
               R G+A K ++EM++KG+      YN F   LS A   GRS+ L
Sbjct: 327 CIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWEL 373



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 9/188 (4%)

Query: 417 NVRSYTIMIWKFCKQ-----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +VR      WKF +      + A +  L+      + M    ++   ++ +   PD  T+
Sbjct: 159 SVRQTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQ-FQPDLQTF 217

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N L+   K  +    A   ++EM   G KP + TYN ++  Y +    E   K+ D+M  
Sbjct: 218 NILLSGWKSSEE---AEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMRE 274

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
               PD  +YT +IGGL    +  +A + L+EM E G    V  YN    +   A R   
Sbjct: 275 EEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGD 334

Query: 592 LDELAQKM 599
            D+L  +M
Sbjct: 335 ADKLVDEM 342


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 178/370 (48%), Gaps = 23/370 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           ++N ++S L + + +  + S+  +M   GL S   T  I +N        ++  A F  +
Sbjct: 71  SFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGI 130

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            +  +   + T N L++ L       EA  LF ++ K   TP++ TY  L+ G C   N+
Sbjct: 131 LRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNI 190

Query: 365 MEAGRVWNEMIDK------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
             A ++  EM++         KP+V+ +NI+++GL K+G+  +A +LFE MK +G  P++
Sbjct: 191 NIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSI 250

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            SY  +I  FC        C      ++R       LL EM ++G  PD +T+N LI  +
Sbjct: 251 ISYNSLIHGFC--------CAGKWEESKR-------LLDEMLDQGLQPDMVTFNVLIDTL 295

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             +    EA ++   M+ SG  P + TYN +++ +   G+    R+++  M  +GC PD 
Sbjct: 296 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 355

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            SY VLI G     +  EA K   EML  G +  V+ Y+     +  AG+     +L   
Sbjct: 356 ISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSV 415

Query: 599 MRFSGKFEVS 608
           M+  G  E S
Sbjct: 416 MKAHGIAENS 425



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 190/410 (46%), Gaps = 31/410 (7%)

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQF 261
           D C +N+  N + +V  R R        F  +AG  + G++ N  TYN+++  L    + 
Sbjct: 103 DRCTLNILLNCLCNV-NRLREG------FAAFAGILRRGYSPNIVTYNTLIKGLCMEHRI 155

Query: 262 ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM----NKYKF--KAGV 314
                +   M + G    + T+   +           A+ + + M    ++Y+   K  V
Sbjct: 156 SEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNV 215

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +++ L +     EA+ LF+++K +   P++ +Y  L+ G+C      E+ R+ +E
Sbjct: 216 ITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDE 275

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M+D+G +PD+V  N++++ L K GK  +A KL  VM   G  P++ +Y  +I  FC    
Sbjct: 276 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFC---- 331

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                 + G  N  R     +L   M  +GC PD ++YN LI         +EA+++Y E
Sbjct: 332 ------MVGDLNSAR-----ELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNE 380

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M+  G +P + TY+ ++K  F  G  +  +K++  M   G   +  +Y + + GL   D 
Sbjct: 381 MLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDC 440

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             EA K   E+     K  + + N     L +AG+     EL +K+   G
Sbjct: 441 LFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 490



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 184/389 (47%), Gaps = 25/389 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N++VD L +    R    +         G   +  +YNS++     A ++E    +L
Sbjct: 216 ITYNIIVDGLCKV--GREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLL 273

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           +EM ++GL   M TF + ++      +  +A  +  +M +      + T N L+E     
Sbjct: 274 DEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMV 333

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                A+ LF  +  +   P++ +Y VL+ G+ +   + EA +++NEM+  G +P+V+ +
Sbjct: 334 GDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITY 393

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA-----AVYT---- 437
           + +L+G+   GK  DA KLF VMKA G + N  +Y I +   CK +       ++T    
Sbjct: 394 DSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKS 453

Query: 438 -----------CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                      CLI G     +++  ++L +++   G  P+ +TY  +I     +   D+
Sbjct: 454 SNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDK 513

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  + ++M  +G  P I TYN +M+ ++++   E   ++   M ++   PD  + ++++ 
Sbjct: 514 ANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 573

Query: 547 GLISQDRSGEAYKYLEEM-LEKGMKAPVL 574
            L   ++  E    L    ++KG+   +L
Sbjct: 574 MLSKDEKYQECLHLLPRFPIQKGVDKHLL 602



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 28/270 (10%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           TP+L+++  LL G  ++K+  +   ++N+M   G   D    NI+L  L  + +  +   
Sbjct: 66  TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFA 125

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
            F  +  +G SPN+ +Y  +I   C +                    +   Y  LI G  
Sbjct: 126 AFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC 185

Query: 445 NRRRMDIVYDLLKEM------EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRS 497
               ++I   L +EM       E  C P+ +TYN ++  L K+ +  DEA ++++EM   
Sbjct: 186 GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR-EDEAKQLFEEMKTQ 244

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P+I +YN ++  +   G +E  +++ DEM+ +G  PD  ++ VLI  L  + +  EA
Sbjct: 245 GMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEA 304

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            K L  M+E G+   ++ YN         G
Sbjct: 305 KKLLGVMIESGIVPDLVTYNSLIEGFCMVG 334


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 162/343 (47%), Gaps = 24/343 (6%)

Query: 281 TFKIAMNAFAAAKERKK-AVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           TF I    FAA++ R   AV +F  L   ++    +   N LL+ LG+S+   +A  L  
Sbjct: 135 TFPILFERFAASQRRPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAASLVR 194

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
            L+ RF P++ TY  L  GWCRVK+   A  +  +M + G  P    +N++L+G  + G+
Sbjct: 195 ALERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQ 254

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A   F  MK +G             + CK +   YT +I G G   ++D    L  E
Sbjct: 255 LQHAWNFFLQMKKRGSKD----------ENCKPDVVSYTTIIHGLGVAGQLDKARKLFDE 304

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + GCPP   TYNALI+++  +   ++AV ++ +M+R  + P + TY ++++     G 
Sbjct: 305 MSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGK 364

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YN 577
            +   K+ + M   GC P   +Y VLI     +    +A    E M +     P  D YN
Sbjct: 365 IDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYN 424

Query: 578 ---------KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
                    K A D++ A R  ++ E+ ++     +F ++ VL
Sbjct: 425 IVISAMFVRKRAEDMAIAAR--MVMEMVERGYLPRRFMLNRVL 465



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 29/323 (8%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           N ++D L + RHA + A      A ++  F  +  TYN++     R +     + +L +M
Sbjct: 174 NSLLDALGKSRHASKAAS--LVRALER-RFPPDVVTYNTLADGWCRVKDTSRALDLLRQM 230

Query: 272 GEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELMNKY-----KFKAGVDTINCLLENLG 325
            E G+   +T + + +  F  A + + A   F  M K        K  V +   ++  LG
Sbjct: 231 AESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLG 290

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +    +A+ LFD++ K    P + TY  L+   C+  N+ +A  V+++MI K + P+VV
Sbjct: 291 VAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVV 350

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            + +++ GL  +GK   A+KL E MK +G  P V++Y ++I    ++             
Sbjct: 351 TYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEG------------ 398

Query: 445 NRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQKMPDE---AVRIYKEMVRSGFK 500
               MD    L + M +   C P+  TYN +I  M ++K  ++   A R+  EMV  G+ 
Sbjct: 399 ---EMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMVERGYL 455

Query: 501 PTIHTYNMIMKSYFQTGNYEMGR 523
           P     N ++     TGN ++ R
Sbjct: 456 PRRFMLNRVLNGLMLTGNQQLSR 478



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 156/346 (45%), Gaps = 28/346 (8%)

Query: 217 VLERFRHA-RRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           + ERF  + RRP  A R F         A +   +NS++  LG++R      S++  +  
Sbjct: 139 LFERFAASQRRPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAASLVRALER 198

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           +    + T+    + +   K+  +A+ +   M +        T N +L+   R+   + A
Sbjct: 199 RFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHA 258

Query: 334 QLLFDKLKHRFT------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              F ++K R +      P++ +YT ++ G      L +A ++++EM  +G  P +  +N
Sbjct: 259 WNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYN 318

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            +++ + K G   DA+ +F+ M  K   PNV +YT++I   C                  
Sbjct: 319 ALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVG--------------- 363

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPTIHTY 506
           ++D    L++ M+  GC P   TYN LI+    +   D+A+ +++ M +     P   TY
Sbjct: 364 KIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTY 423

Query: 507 NMIMKSYF---QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           N+++ + F   +  +  +  ++  EM+ RG  P       ++ GL+
Sbjct: 424 NIVISAMFVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLM 469


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 206/444 (46%), Gaps = 23/444 (5%)

Query: 163 SESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           SE  + +   + T   R + ER  +++ ++F    + E  L+   + + H LV +V+ + 
Sbjct: 38  SEEAVATTGPRYTHSIRVMDERFIRIL-KIFKWGPDAEKALEVLMMKVDHWLVREVM-KT 95

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
                   +FF WA  K  + H++ TY +++  L    Q+  M  M++EM    +  +  
Sbjct: 96  DVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTP 155

Query: 282 FKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +++  +     AK   KAVAIF  +   K +      N ++  L      ++   L+++
Sbjct: 156 MELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNE 215

Query: 340 LKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           + +  +  P+  TY+ L+  +C++     A  + NEM D G +P    + +++  L K+ 
Sbjct: 216 MSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLD 275

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
               A+ LFE M+                ++C+ +   YT LI G G   R+D  Y+   
Sbjct: 276 NVHGALGLFEEMRH---------------QYCRPDVFTYTELIRGLGKAGRLDEAYNFFH 320

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM   GC PD +  N +I  +      D+A+++++EM      P++ TYN I+K+ F++ 
Sbjct: 321 EMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESK 380

Query: 518 NYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           +       W E ++  G  P   +Y++LI G    +R+ +A   LEEM EKG       Y
Sbjct: 381 SRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAY 440

Query: 577 NKFAADLSRAGRSYVLDELAQKMR 600
                 L +A R  + +EL Q+++
Sbjct: 441 CSLIDALGKAKRYDLANELFQELK 464



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 169/416 (40%), Gaps = 62/416 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAI 301
            +  YNSM+ +L    ++E +  +  EM  +G       T+   ++AF     +  A+ +
Sbjct: 189 TAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWL 248

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
              M     +        L+  L +      A  LF++++H++  P++ TYT L+ G  +
Sbjct: 249 LNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGK 308

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM----------- 409
              L EA   ++EM  +G +PD V  N M+  L K G+  DAIKLFE M           
Sbjct: 309 AGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVT 368

Query: 410 -------------------------KAKGPSPNVRSYTIMIWKFCKQN------------ 432
                                    K  G SP+  +Y+I+I  FCK N            
Sbjct: 369 YNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 433 --------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                    A Y  LI   G  +R D+  +L +E++E         Y  +IK +      
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+AV ++ EM R G  P ++ YN +M    + G  +        M   GC PD NSY ++
Sbjct: 489 DDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNII 548

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           +  L        A   L  M +  +K   + YN     LS AG   + +E A+ M+
Sbjct: 549 LNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAG---MFEEAAKLMK 601



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 148/334 (44%), Gaps = 18/334 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
           TY  ++  LG+A + +   +   EM  +G          M N    A     A+ +FE M
Sbjct: 298 TYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEM 357

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
              +    V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+   
Sbjct: 358 ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNR 417

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
             +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y +
Sbjct: 418 TEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAV 477

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI                  G   R+D   DL  EM   GC P+   YNAL+  +    M
Sbjct: 478 MI---------------KHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGM 522

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+   + M   G  P I++YN+I+ +  +TG  +    +   M +    PD  SY  
Sbjct: 523 LDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNT 582

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           ++G L       EA K ++EM   G    ++ Y+
Sbjct: 583 VLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYS 616



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             AV +F+ MN+      V   N L+  L R+ +  EA     +++ H   P++ +Y ++
Sbjct: 489 DDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNII 548

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L    +      A  +   M     KPD V++N +L  L   G   +A KL + M A G 
Sbjct: 549 LNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGF 608

Query: 415 SPNVRSYT 422
             ++ +Y+
Sbjct: 609 DYDLITYS 616


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 169/370 (45%), Gaps = 25/370 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  N  TY  +M+ L R  + +    +L ++     +    F I +N +  +    +A 
Sbjct: 308 GFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVH---FTILINGYVKSGRLDEAN 364

Query: 300 A-IFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           A +++ M K   +  V T N L+  L +  L   A  ++ D   +  TPNL TYT LL G
Sbjct: 365 AFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDG 424

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   L EAG V NEM  KGF+ +++ +N++L  L K GK   A+ +   M  KG  P+
Sbjct: 425 FCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPD 484

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + ++  +I+  CK                     N   Y  LI  F     +     L+ 
Sbjct: 485 IFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVN 544

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M  RGCP D +TYN LIK        ++A+ ++ EMVR    P+  + N+++    + G
Sbjct: 545 DMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVG 604

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                 ++  +MI RG  PD  +Y  LI GL       EA+    ++  +G++   + YN
Sbjct: 605 KVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYN 664

Query: 578 KFAADLSRAG 587
                  RAG
Sbjct: 665 TLICWHCRAG 674



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 195/450 (43%), Gaps = 50/450 (11%)

Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRF-------FCWAG 236
           KVID+L          + E GI    +L + +++ +  A  P  A R        +C   
Sbjct: 119 KVIDKLL-------LQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCC-- 169

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
            +P F    ++YN ++ IL  A       ++  EM  KG++ ++ TF + M A     E 
Sbjct: 170 -EPTF----KSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEV 224

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             A ++   M K+           L+  L  R ++ +  +LL +       P++ T+  +
Sbjct: 225 DNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDV 284

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G CR+  + E  ++ + M+ +GF P+ + + +++ GL ++GK  +A    +V+  K P
Sbjct: 285 IYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEA----QVLLNKVP 340

Query: 415 SPNVRSYTIMIWKF---------------------CKQNAAVYTCLITGFGNRRRMDIVY 453
           +PN   +TI+I  +                     C+ +   +  LI G   +  M    
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV 400

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           D++ +M   GC P+ +TY  L+     +   +EA  +  EM   GF+  I  YN+++++ 
Sbjct: 401 DMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRAL 460

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G       +  EM  +GC PD  ++  LI GL   DR  +A     +ML  G+ A  
Sbjct: 461 CKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANT 520

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + YN       R G      +L   M F G
Sbjct: 521 VTYNTLIHAFLRGGAIQEALKLVNDMLFRG 550



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 171/381 (44%), Gaps = 28/381 (7%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFA 290
           F WAG + G+ H    Y+ ++  LG A++F+ +  +L ++ E+G+   E+ F   M  + 
Sbjct: 89  FQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYG 148

Query: 291 AAKERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPK-EAQLLFDKLKHRFTPNL 348
            A    +A   + ++   Y  +    + N +L+ L  +  P   A + ++ L     P +
Sbjct: 149 RANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTV 208

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            T+ V++   C V  +  A  +  +M   G  P+ V +  ++  L K  + ++A+KL E 
Sbjct: 209 YTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEE 268

Query: 409 MKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRR 448
           M   G  P+V ++  +I+  C+                     N   Y  L+ G     +
Sbjct: 269 MFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK 328

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +D    LL ++      P+ + +  LI   +K  ++ +    +Y +M+++G +P + T+N
Sbjct: 329 VDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFN 384

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++    + G       + ++M   GC P+  +YT L+ G   +++  EA   L EM  K
Sbjct: 385 TLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAK 444

Query: 568 GMKAPVLDYNKFAADLSRAGR 588
           G +  ++ YN     L + G+
Sbjct: 445 GFELNIMGYNVLLRALCKNGK 465



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 2/194 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYN+++    R    +  + ++ +M  +G  L   T+   + AF      +KA
Sbjct: 515 GVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKA 574

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F+ M +        + N L+  L R  K+    +LL D +     P++ TY  L+ G
Sbjct: 575 LGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLING 634

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++ N+ EA  ++N++  +G +PD + +N ++    + G   DA  L          PN
Sbjct: 635 LCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPN 694

Query: 418 VRSYTIMIWKFCKQ 431
             ++ I++  F K+
Sbjct: 695 DVTWYILVSNFIKE 708


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 20/291 (6%)

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           + +  P++ TY +L+ G C+     +A  + +EM+D+G  PD V  N +++GL K GK  
Sbjct: 3   ERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFE 62

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLI 440
            A  L  VM  +   P+  +Y  +I   CKQ                    +   Y+ L 
Sbjct: 63  RAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILA 122

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   R R+D  ++L+KEM   GC P+ +TYN LI  +      ++A  + + +V SGF 
Sbjct: 123 DGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFV 182

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY +I+    + G  +   K+ + M++RGC P   +YT L+ GL    R  EA+  
Sbjct: 183 PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHI 242

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
            +EM+ K   A  L Y        ++ R+    ++   +R +   +V N L
Sbjct: 243 FKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNAL 293



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 173/364 (47%), Gaps = 24/364 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ T+NS+M  L +A +FE   S+L  M E+    S  T+   ++     +   +A
Sbjct: 40  GVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRA 99

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + +      F   V T + L + L  R ++ +  +L+ +   +  TPNL TY  L+ G
Sbjct: 100 KTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDG 159

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     +A  +   ++  GF PDVV + I+++GL K G+   A+K+ E M  +G +P+
Sbjct: 160 LCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +YT ++   C+          TG     R+D  + + KEM  + C  D L Y +L+  
Sbjct: 220 VITYTALMEGLCR----------TG-----RVDEAHHIFKEMVSKDCTADALAYVSLVNG 264

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   EA ++  + +R    P I  YN +M  Y + G  +    V+++M  RGC P+
Sbjct: 265 YCKSSRTKEAQKVV-DGIRG--TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN 321

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLD 593
             +Y +++ GL    +  EA+ +LE M   G    V+ YN     L +A +      VLD
Sbjct: 322 IKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLD 381

Query: 594 ELAQ 597
           ++ Q
Sbjct: 382 QMIQ 385



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 21/351 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+++  L +A + E    +LE +   G +  + T+ I ++         KA
Sbjct: 145 GCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKA 204

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + E M K      V T   L+E L R+    EA  +F ++  +  T +   Y  L+ G
Sbjct: 205 LKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNG 264

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+     EA +V + +  +G  P +  +N +++G  K G+  +   +FE M  +G  PN
Sbjct: 265 YCKSSRTKEAQKVVDGI--RG-TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN 321

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           +++Y I++   CK                 ++D  +  L+ M   GC PD ++YN +I  
Sbjct: 322 IKTYNIVMDGLCKHG---------------KVDEAFPFLESMHSAGCVPDVVSYNIIIDG 366

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +     P EA ++  +M+++G  P   TYN +M  + +   ++    +   MI+ G  PD
Sbjct: 367 LFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPD 426

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAPVLDYNKFAADLSRAG 587
           + +Y  LI GL   +R G+AY+ + EML  G + +    YN     L + G
Sbjct: 427 NVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 477



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 171/409 (41%), Gaps = 56/409 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN++M    +  + + + ++ E+M  +G + +++T+ I M+      +  +A    E M
Sbjct: 289 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 348

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNL 364
           +       V + N +++ L ++  PKEA+ + D+ ++    P+  TY  L+  +C+ +  
Sbjct: 349 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 408

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---------------------- 402
            +A  +   MI  G  PD V +N ++ GL +  +  DA                      
Sbjct: 409 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNT 468

Query: 403 --------------IKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
                         + L + M   G   N  +Y I I + CK+                 
Sbjct: 469 IIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR 528

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           +   YT +I G     ++D    L +EM   +G      T+N LI      K  DEA+ +
Sbjct: 529 DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTL 588

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            + MV+ G  P++ TYNM++    +    +   +++DEM  RG      SYTVLI GL  
Sbjct: 589 LELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCG 648

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           Q R  EA + LEEM     +   L   K    L   GR     EL ++M
Sbjct: 649 QGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 63/145 (43%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M ER   PD  TYN LI  +      D+A  +  EMV  G  P   T+N IM    + G 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           +E    +   M  R C P   +Y  LI GL  Q     A   ++E +  G    V+ Y+ 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
            A  L + GR     EL ++M  +G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNG 145


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 210/505 (41%), Gaps = 100/505 (19%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDK 238
           + ++  ++D   S++ N++    +  I LS N V  VL+      +P  A+ FFCW+  +
Sbjct: 68  VSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQ 127

Query: 239 PGFAHNSRTYNSMMSILGRAR---------------QFETMVS-------------MLEE 270
             + HN   Y S++ +L  A+               +F   VS             M+EE
Sbjct: 128 KKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEE 187

Query: 271 -------MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
                  M E G+  ++ T+   MN   +A     A  +FE+M   + K  + T N +++
Sbjct: 188 LLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIK 247

Query: 323 NLGRSKLPKEAQLLFDKLKHR---------------------FTPNLTTY---------- 351
              ++   ++A      ++ R                     F   +  Y          
Sbjct: 248 GYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQV 307

Query: 352 -----TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                ++++GG C+   L E   V+  MI KG KP+V  + ++++G  K G   DAI+L 
Sbjct: 308 PPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLL 367

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M  +G  P+V +Y++++   CK                     N+  Y+ LI G G  
Sbjct: 368 HRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKA 427

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGFKPTIHT 505
            R+D    L +EM E+GC  D   YNALI      +  DEA+ ++K M    G   T++T
Sbjct: 428 GRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYT 487

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y +++   F+    E   K+WD MI +G  P    +  L  GL    +   A K L+E+ 
Sbjct: 488 YTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELA 547

Query: 566 EKGMKAPVLDY--NKFAADLSRAGR 588
             G+   +LD         L +AGR
Sbjct: 548 PMGV---ILDAACEDMINTLCKAGR 569


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 210/505 (41%), Gaps = 100/505 (19%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDK 238
           + ++  ++D   S++ N++    +  I LS N V  VL+      +P  A+ FFCW+  +
Sbjct: 86  VSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQ 145

Query: 239 PGFAHNSRTYNSMMSILGRAR---------------QFETMVS-------------MLEE 270
             + HN   Y S++ +L  A+               +F   VS             M+EE
Sbjct: 146 KKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEE 205

Query: 271 -------MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
                  M E G+  ++ T+   MN   +A     A  +FE+M   + K  + T N +++
Sbjct: 206 LLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIK 265

Query: 323 NLGRSKLPKEAQLLFDKLKHR---------------------FTPNLTTY---------- 351
              ++   ++A      ++ R                     F   +  Y          
Sbjct: 266 GYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQV 325

Query: 352 -----TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                ++++GG C+   L E   V+  MI KG KP+V  + ++++G  K G   DAI+L 
Sbjct: 326 PPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLL 385

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M  +G  P+V +Y++++   CK                     N+  Y+ LI G G  
Sbjct: 386 HRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKA 445

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGFKPTIHT 505
            R+D    L +EM E+GC  D   YNALI      +  DEA+ ++K M    G   T++T
Sbjct: 446 GRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYT 505

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y +++   F+    E   K+WD MI +G  P    +  L  GL    +   A K L+E+ 
Sbjct: 506 YTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELA 565

Query: 566 EKGMKAPVLDY--NKFAADLSRAGR 588
             G+   +LD         L +AGR
Sbjct: 566 PMGV---ILDAACEDMINTLCKAGR 587


>gi|357455405|ref|XP_003597983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487031|gb|AES68234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 181/398 (45%), Gaps = 41/398 (10%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           + H  V   L  F +  + A  FF W   K  F H++ TYN ++ ILG+  +F+   +++
Sbjct: 74  VDHTTVRATLTSFNNDYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLI 133

Query: 269 EEMGEK--GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
             M +    L +  TF++    + +A   + AV  F+ +N++  K      N L++ L  
Sbjct: 134 HRMRQNPHSLPNHTTFRVMFKRYVSAHCVQDAVNTFQRLNEFNLKDETSFSN-LIDALCE 192

Query: 327 SKLPKEAQ-LLF-DKLKHRFT-------------PNLTTYTVLLGGWCRVKNLMEAGRVW 371
            K   EAQ L+F DK     T              N   + ++L GW ++    +    W
Sbjct: 193 YKHVLEAQDLVFGDKKNQTLTWIVDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWEFW 252

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK---- 427
           +EM  +G + D+ +++I ++ L K GK   A+KLF+ MK KG   +V  Y I+I      
Sbjct: 253 DEMDRRGVEKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVS 312

Query: 428 ---------FCKQ-------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                    FC+            Y  +I    +  R      L++ M   GC P+ ++Y
Sbjct: 313 QGVDFSIRMFCEMKDLGLNPTVVTYNTIIRLLCDSYRYKEALTLIRTMRRDGCSPNAVSY 372

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
                 ++    P   + ++  M+ SG +PT+ TY M++K + + G   +   VW+ M  
Sbjct: 373 QCFFACLE---KPKFIIELFDGMIESGVRPTMDTYVMLLKKFARWGFLRLVFLVWNRMEE 429

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            GC PD ++Y  LI  L+ +     A KY EEML KG+
Sbjct: 430 LGCSPDASAYNALIDALVEKGLIDMARKYDEEMLAKGL 467



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 113/260 (43%), Gaps = 20/260 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N++ +N ++    +   +       +EM  +G+   + ++ I M+  +   +  KAV +F
Sbjct: 228 NTKIFNIVLRGWYKLGWWSKCWEFWDEMDRRGVEKDLHSYSIYMDILSKGGKPWKAVKLF 287

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M +   +  V   N ++  +G S+    +  +F ++K     P + TY  ++   C  
Sbjct: 288 KEMKRKGIQLDVVVYNIVIRAIGVSQGVDFSIRMFCEMKDLGLNPTVVTYNTIIRLLCDS 347

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA  +   M   G  P+ V++      L    K    I+LF+ M   G  P + +Y
Sbjct: 348 YRYKEALTLIRTMRRDGCSPNAVSYQCFFACL---EKPKFIIELFDGMIESGVRPTMDTY 404

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
            +++ KF +           GF     + +V+ +   MEE GC PD   YNALI  +  +
Sbjct: 405 VMLLKKFARW----------GF-----LRLVFLVWNRMEELGCSPDASAYNALIDALVEK 449

Query: 482 KMPDEAVRIYKEMVRSGFKP 501
            + D A +  +EM+  G  P
Sbjct: 450 GLIDMARKYDEEMLAKGLSP 469



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 128/304 (42%), Gaps = 23/304 (7%)

Query: 294 ERKKAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTT 350
           + K+A+  F  +  K+KF+   +T N +L+ LG+    ++   L  +++      PN TT
Sbjct: 89  DYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLIHRMRQNPHSLPNHTT 148

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE-VM 409
           + V+   +     + +A   +  + +   K +    N++           DA+  ++ V+
Sbjct: 149 FRVMFKRYVSAHCVQDAVNTFQRLNEFNLKDETSFSNLI-----------DALCEYKHVL 197

Query: 410 KAKGPSPNVRSYTIMIWKF--------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           +A+      +    + W            +N  ++  ++ G+         ++   EM+ 
Sbjct: 198 EAQDLVFGDKKNQTLTWIVDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWEFWDEMDR 257

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           RG   D  +Y+  + ++     P +AV+++KEM R G +  +  YN+++++   +   + 
Sbjct: 258 RGVEKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVSQGVDF 317

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             +++ EM   G  P   +Y  +I  L    R  EA   +  M   G     + Y  F A
Sbjct: 318 SIRMFCEMKDLGLNPTVVTYNTIIRLLCDSYRYKEALTLIRTMRRDGCSPNAVSYQCFFA 377

Query: 582 DLSR 585
            L +
Sbjct: 378 CLEK 381



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 5/184 (2%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   +   YN ++  +G ++  +  + M  EM + GL  ++ T+   +     +   K
Sbjct: 292 RKGIQLDVVVYNIVIRAIGVSQGVDFSIRMFCEMKDLGLNPTVVTYNTIIRLLCDSYRYK 351

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLL 355
           +A+ +   M +        +  C    L + K   E   LFD  ++    P + TY +LL
Sbjct: 352 EALTLIRTMRRDGCSPNAVSYQCFFACLEKPKFIIE---LFDGMIESGVRPTMDTYVMLL 408

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + R   L     VWN M + G  PD  A+N +++ L++ G    A K  E M AKG S
Sbjct: 409 KKFARWGFLRLVFLVWNRMEELGCSPDASAYNALIDALVEKGLIDMARKYDEEMLAKGLS 468

Query: 416 PNVR 419
           P  R
Sbjct: 469 PKPR 472


>gi|255580386|ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529395|gb|EEF31358.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 206/452 (45%), Gaps = 32/452 (7%)

Query: 180 EIERVCKVI-DELFSLDRNMEAVLDECG-INLSHNLVVDVLERFRHARR---PAFRFFCW 234
           E+ER+ K+I D  F  +     +L       LS + V +VL R   A      A  FF +
Sbjct: 59  EVERITKIINDNSFPNESLYPTLLKHLNPAALSTDFVENVLGRLFAAHSNGLKALEFFRF 118

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GLLSMETFKIAMNAFAAA 292
           +     F  +S  +   + IL R R FE    ++ E+G+    LL++++  I ++  A  
Sbjct: 119 SLRHSHFNPSSFAFEMTLHILARMRYFEKAWELMMEIGKSHPSLLTLKSMGIMLSKIAKF 178

Query: 293 KERKKAVAIFELMNKYKFKA---GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           +  +  +  F+ M K  F     G +  N LL+     +  KEA+ +F K+  +F PN  
Sbjct: 179 QSYEDTLEAFKRMEKTVFVGKTFGTEEFNVLLQAFCSQREVKEARSVFQKMHDQFNPNTK 238

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           T  +LL G+ + +++      ++E++ +GFK   + +NI ++   K G   D +++FE M
Sbjct: 239 TMNILLLGFKKARDITAMELFYHEIVRRGFKATSLTYNIRIDAYCKKGYFGDGLRIFEEM 298

Query: 410 KAKGPSPNVRSYTIMIW--------------------KFCKQNAAVYTCLITGFGNRRRM 449
           +     P + + T +I                     +  K +   Y  LI+     + +
Sbjct: 299 EKDNCPPTLETITTLIHGAGVARNIHKARHLFDEIGKRNLKPDTGAYNALISSLVKCKDI 358

Query: 450 DIVYDLLKEMEERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +    L+ EMEE+    D +TY+ +   LMK+    +    +Y  M+   F P   T  M
Sbjct: 359 ESAMRLMDEMEEKHIGRDSVTYHTIFFGLMKLND-TEGVCDLYHRMISRDFVPKTRTVVM 417

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +MK +      ++G   W  M+ +G CP  ++  +L+ GL S+ R  EAY+  ++ +E+G
Sbjct: 418 LMKFFCVNSRLDLGLAFWQYMLDKGYCPHGHALDLLVTGLCSRGRLLEAYECSKQFVERG 477

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           M+   + Y      L ++  +  L EL Q ++
Sbjct: 478 MRMSEVVYRMLERSLQQSDFTDKLRELDQMIK 509


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 169/377 (44%), Gaps = 55/377 (14%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           ++ ++S + +  +F+ ++S+ E+M   G+  +  T+ I +N F                 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCR--------------- 128

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
                              RS+LP    +L   +K  + P++ T + LL G+C  K + E
Sbjct: 129 -------------------RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISE 169

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  + ++M++ G+KPD V  N ++ GL    K S+A+ L + M A+G  P++ +Y  ++ 
Sbjct: 170 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 229

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK+                    N  +Y  +I G    + MD  +DL  +ME +G  P
Sbjct: 230 GLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP 289

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D  TYN+LI  +       +A R+  +M+     P + T+N ++ ++ + G      K++
Sbjct: 290 DVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLF 349

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           DEMI+R   P+  +Y  LI G    DR  EA +    M+ K     V+ YN       +A
Sbjct: 350 DEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKA 409

Query: 587 GRSYVLDELAQKMRFSG 603
            R     EL ++M   G
Sbjct: 410 KRVEEGMELFREMSQRG 426



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 176/406 (43%), Gaps = 57/406 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  HN  TY+ +++   R  Q    +++L +M + G    + T    +N +   K   +A
Sbjct: 111 GIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 170

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL------------------ 340
           VA+ + M +  +K    T N L+  L       EA  L D++                  
Sbjct: 171 VALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 230

Query: 341 ------------------KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                             K +   N+  Y  ++ G C+ K++ +A  ++N+M  KG KPD
Sbjct: 231 LCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           V  +N ++  L   G+ SDA +L   M  +  +PNV ++  +I  F K+           
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 350

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    N   Y  LI GF    R+D    +   M  + C PD +TYN LIK     K
Sbjct: 351 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAK 410

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             +E + +++EM + G      TYN +++  FQ G+ +M +K++ +M+  G  PD  +Y+
Sbjct: 411 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 470

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +L+ GL    +  +A    E + +  M+  +  YN     + +AG+
Sbjct: 471 ILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGK 516



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 177/383 (46%), Gaps = 30/383 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFEL 304
           TY ++++ L +    +  +S+L++M EKG +  ++  +   ++     K    A  +F  
Sbjct: 223 TYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNK 281

Query: 305 MNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           M     K  V T N L+    N GR      ++LL D ++ +  PN+ T+  L+  + + 
Sbjct: 282 METKGIKPDVFTYNSLISCLCNYGR--WSDASRLLSDMIERKINPNVVTFNSLIDAFAKE 339

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA ++++EMI +   P++V +N ++ G     +  +A ++F +M +K   P+V +Y
Sbjct: 340 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 399

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  FCK                     N   Y  LI G       D+   + K+M  
Sbjct: 400 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 459

Query: 462 RGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            G PPD +TY+ L+  L K  K+ ++A+ +++ + +S  +P I+TYN++++   + G  E
Sbjct: 460 DGVPPDIITYSILLDGLCKYGKL-EKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVE 518

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
            G  ++  +  +G  P+   YT +I G   +    EA     EM E G       YN   
Sbjct: 519 DGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLI 578

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               R G      EL ++MR  G
Sbjct: 579 RARLRDGDKAASAELIKEMRSCG 601



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 176/383 (45%), Gaps = 25/383 (6%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID   SL + ME    E  + + +N ++D L +++H    AF  F     K G   +  T
Sbjct: 237 IDLALSLLKKMEKGKIEANVVI-YNTIIDGLCKYKHMD-DAFDLFNKMETK-GIKPDVFT 293

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YNS++S L    ++     +L +M E+ +  ++ TF   ++AFA   +  +A  +F+ M 
Sbjct: 294 YNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 353

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           +      + T N L+          EAQ +F  +  +   P++ TY  L+ G+C+ K + 
Sbjct: 354 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVE 413

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   ++ EM  +G   + V +N +++GL + G    A K+F+ M + G  P++ +Y+I++
Sbjct: 414 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 473

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK                     N   Y  +I G     +++  +DL   +  +G  
Sbjct: 474 DGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ + Y  +I     + + +EA  +++EM   G  P    YN ++++  + G+     ++
Sbjct: 534 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAEL 593

Query: 526 WDEMIRRGCCPDDNSYTVLIGGL 548
             EM   G   D ++ +++I  L
Sbjct: 594 IKEMRSCGFVGDASTISMVINML 616



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 20/245 (8%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++ EM+     P ++  + +L  + K+ K    I L E M+  G   N  +Y+I
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++  FC++                    +    + L+ G+ + +R+     L+ +M E G
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +T+N LI  + +     EAV +   MV  G +P + TY  ++    + G+ ++  
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M +     +   Y  +I GL       +A+    +M  KG+K  V  YN   + L
Sbjct: 242 SLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCL 301

Query: 584 SRAGR 588
              GR
Sbjct: 302 CNYGR 306



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 16/214 (7%)

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  DA+ LF  M    P P++  ++ ++    K N               + D+V  L +
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMN---------------KFDVVISLGE 105

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M+  G P +  TY+ L+     +     A+ +  +M++ G++P I T + ++  Y    
Sbjct: 106 QMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 165

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                  + D+M+  G  PD  ++  LI GL   +++ EA   ++ M+ +G +  +  Y 
Sbjct: 166 RISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 225

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
                L + G   +   L +KM   GK E + V+
Sbjct: 226 TVVNGLCKRGDIDLALSLLKKME-KGKIEANVVI 258


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 170/348 (48%), Gaps = 4/348 (1%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +FE   +++ EM  KG +    T+   +     A + +KA  +F+ M +      V    
Sbjct: 202 KFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYT 261

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++   ++A+  FD+++     PN+ TYT L+  + + + + +A  V+  M+ K
Sbjct: 262 TLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSK 321

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNV-RSYTIMIWKFCKQNAAV 435
           G  P++V +  +++GL K GK   A +++++MK +    P+V   + ++     + N   
Sbjct: 322 GCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFT 381

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  L+ G     ++    DLLK M   GC P+ + Y+ALI         DEA  ++  M+
Sbjct: 382 YGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTML 441

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G+ P ++TY+ ++   F+    ++  KV  +M+   C P+   YT +I GL    ++ 
Sbjct: 442 ECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD 501

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EAYK +  M EKG    V+ Y        ++GR     EL Q+M   G
Sbjct: 502 EAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKG 549



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 33/339 (9%)

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           M+ F +   A +  K  K   A+  L+ K +F         ++  L  + L +EA     
Sbjct: 8   MDEFTLGCFAHSLCKSGKWREAL-SLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLT 66

Query: 339 KLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           +++     PN+ TY +LL G    + L    R+ + MI +G  P     N ++    + G
Sbjct: 67  RMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSG 126

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC---------------------------- 429
             + A KL + M   G  P    Y I+I   C                            
Sbjct: 127 DYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLN 186

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           K N + ++  + G G   + +  Y++++EM  +G  PD  TY+ +I  +      ++A +
Sbjct: 187 KVNISNFSRCLCGIG---KFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQ 243

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +++EM R+G  P ++ Y  ++ S+ + G  E  R  +DEM R GC P+  +YT LI   +
Sbjct: 244 LFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYL 303

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              +  +A +  E ML KG    ++ Y      L +AG+
Sbjct: 304 KSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGK 342



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 173/454 (38%), Gaps = 121/454 (26%)

Query: 232 FCWAG------------DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-S 278
           FC AG            ++ G A N  TY +++    ++R+      + E M  KG   +
Sbjct: 267 FCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPN 326

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFK-----------------AGVDTINCLL 321
           + T+   ++    A + +KA  I+++M K   +                   V T   L+
Sbjct: 327 IVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALV 386

Query: 322 ENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           + L ++   KEA+ L   +      PN   Y  L+ G C+   L EA  V+  M++ G+ 
Sbjct: 387 DGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYD 446

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
           P+V  ++ +++ L K  +   A+K+   M     +PNV  YT MI   CK          
Sbjct: 447 PNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 506

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      N   YT +I GFG   R++   +LL++M  +GC P+ +TY  LI     
Sbjct: 507 MVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCS 566

Query: 481 QKMPDEAVRIYKEM--------------VRSGFK-------------------PTIHTYN 507
             + DEA ++ +EM              V  GF                    P    Y 
Sbjct: 567 TGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYR 626

Query: 508 MIMKSYFQTGNYEMGRKVWDE-------------------------------------MI 530
           +++ ++ + G  E+  ++ +E                                     MI
Sbjct: 627 VLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMI 686

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            RG  P+ +    LI GL+  +R  EA + L+ +
Sbjct: 687 SRGSIPELSILVHLIKGLLRVNRWEEALQLLDSI 720


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 180/402 (44%), Gaps = 56/402 (13%)

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           LGRAR     +++L  M   G +     ++  ++A  A     +A  + + M      A 
Sbjct: 193 LGRARD---ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAAD 249

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEA----G 368
           V+T N ++  L      +EA  L D++  H  TP++ TY  LL G CR +   EA    G
Sbjct: 250 VNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLG 309

Query: 369 RV---------------------------WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           RV                           +  M  KG  PDV  +NI++ GL K+G+   
Sbjct: 310 RVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGS 369

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLIT 441
           A+++ + M+ KG +PN+ +Y+ ++  FC+                     N+  Y  +I 
Sbjct: 370 AVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIY 429

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
             G   ++D    L++EM+ +GC PD  TYN +I  +      DEA  I+  ++  G   
Sbjct: 430 ALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVA 489

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              TYN ++ +   +G ++ G ++ +EM+  GC  D  SY  LI  L  +     +   L
Sbjct: 490 NGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLL 549

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EEM+ KG+K     YN    +L +AG+     EL+++M   G
Sbjct: 550 EEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 591



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 143/309 (46%), Gaps = 19/309 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TYN +M  L +  +  + V ML+EM EKG   ++ T+   +++F        A
Sbjct: 346 GCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 405

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            A+ + M+   F       N ++  LG+     EA  L  ++K +   P++ TY  ++  
Sbjct: 406 RAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYH 465

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    + EA  ++  ++++G   + + +N ++  LL  G+  + ++L   M   G   +
Sbjct: 466 LCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLD 525

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           V SY  +I   CK+          G  +R  M     LL+EM  +G  P+  +YN LI +
Sbjct: 526 VVSYNGLIKALCKE----------GNVDRSMM-----LLEEMMTKGIKPNNFSYNMLINE 570

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L K  K+ D A+ + KEM+  G  P I TYN ++    + G       + +++      P
Sbjct: 571 LCKAGKVRD-ALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHP 629

Query: 537 DDNSYTVLI 545
           D  +Y +LI
Sbjct: 630 DIVTYNILI 638



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 19/320 (5%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLL 336
           S  ++   ++  A A     A+ ++  M + +      T       L R    ++A  LL
Sbjct: 144 SFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALL 203

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               +H   P+   Y  ++        + EA  + +EM+  G   DV   N ++ GL  +
Sbjct: 204 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGL 263

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------NAAVYTCLI 440
           G   +A +L + M   G +P+V +Y  ++   C+                 N  +   +I
Sbjct: 264 GHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVI 323

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF 499
            G     ++    +L + M  +GCPPD  TYN L+  L K+ +    AVR+  EM   G 
Sbjct: 324 RGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRC-GSAVRMLDEMEEKGC 382

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P I TY+ ++ S+ + G ++  R + D+M  +G   +   Y  +I  L    +  EA +
Sbjct: 383 APNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMR 442

Query: 560 YLEEMLEKGMKAPVLDYNKF 579
            ++EM  +G K  +  YN  
Sbjct: 443 LVQEMKSQGCKPDICTYNTI 462



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 133/302 (44%), Gaps = 24/302 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           ++ G A N  TY++++    R   ++   +ML++M  KG  SM +       +A  K+ K
Sbjct: 378 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGF-SMNSQGYNGIIYALGKDGK 436

Query: 297 --KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTV 353
             +A+ + + M     K  + T N ++ +L  +    EA+ +F + L+     N  TY  
Sbjct: 437 LDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNT 496

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+          E  R+ NEM+  G   DVV++N +++ L K G    ++ L E M  KG
Sbjct: 497 LIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKG 556

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
             PN  SY ++I + CK                     +   Y  LI G           
Sbjct: 557 IKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAAL 616

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +LL+++      PD +TYN LI      ++ D+A  +  + V  G  P   T+ M+++++
Sbjct: 617 NLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNF 676

Query: 514 FQ 515
            +
Sbjct: 677 VR 678



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 2/194 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+++  L  + +++  + +  EM   G  L + ++   + A        ++
Sbjct: 486 GVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRS 545

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + + E M     K    + N L+  L ++   ++A +L  + L    TP++ TY  L+ G
Sbjct: 546 MMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLING 605

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V     A  +  ++ ++   PD+V +NI++    K+    DA  L +   + G  PN
Sbjct: 606 LCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPN 665

Query: 418 VRSYTIMIWKFCKQ 431
            R++ +M+  F +Q
Sbjct: 666 ERTWGMMVQNFVRQ 679



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
              P   ++N +L  L +    +DA+ L+  M      P   ++ +     C+       
Sbjct: 140 AVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCR------- 192

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                 G  R       LL+ M   GC PD + Y  +I  +  Q    EA  +  EM+  
Sbjct: 193 -----LGRARD---ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLM 244

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G    ++T+N ++      G+     ++ D M+  GC P   +Y  L+ GL    ++ EA
Sbjct: 245 GCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEA 304

Query: 558 YKYLEEMLE 566
           Y  L  + E
Sbjct: 305 YAMLGRVPE 313



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 455 LLKEMEER-GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           LL +M  R    P   +YNA++  +       +A+ +Y+ M+R    PT  T+ +  ++ 
Sbjct: 131 LLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARAL 190

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G       +   M R GC PD   Y  +I  L++Q    EA   L+EML  G  A V
Sbjct: 191 CRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADV 250

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +N     L   G       L  +M   G
Sbjct: 251 NTFNDVVLGLCGLGHVREAARLVDRMMMHG 280



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 51/131 (38%)

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L + M     PP   T+    + +       +A+ + + M R G  P    Y  ++ +  
Sbjct: 167 LYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALV 226

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
             G       + DEM+  GC  D N++  ++ GL       EA + ++ M+  G    V+
Sbjct: 227 AQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVV 286

Query: 575 DYNKFAADLSR 585
            Y      L R
Sbjct: 287 TYGFLLRGLCR 297


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 181/398 (45%), Gaps = 30/398 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           A  FF    D+   + N  TY+ ++  L +A +    V +LE M  +G    + T+ I +
Sbjct: 98  ALEFFRKMDDR--CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILV 155

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           +      +   A  +   M        + T N LL  L R++   +A  L   +  R  T
Sbjct: 156 DGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCT 215

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ TY  L+ G C+V  + +A  +  +MIDKG  PD++ +N+++ GL K  +  ++I L
Sbjct: 216 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 275

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGN 445
                + G  P+V +Y+ +I+  C+ N                      +Y+ LI G   
Sbjct: 276 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             ++D  +DL + M   GC  D +TY+ LI  +      DEA  +   MVR G  P+  T
Sbjct: 336 AGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMT 395

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR-SGEAYKYLEEM 564
           YN ++K      + +   ++ +EM R  C P   +Y +LI G+   +R    A  Y +EM
Sbjct: 396 YNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEM 455

Query: 565 LEKGMKAPVLDYNKFAADLSRAG-----RSYVLDELAQ 597
           ++ G+    + Y+     L ++      R  VLD++ Q
Sbjct: 456 IDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 493



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 191/421 (45%), Gaps = 30/421 (7%)

Query: 190 ELFSLDRNMEAVLDECGINL-SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
           ELF    +M++V  EC  ++ ++N ++D L R     R A   F    D+   +H+  ++
Sbjct: 31  ELF---EHMKSV--ECSPSMVTYNTLLDGLFRTGKLER-AMALFQEMLDRR--SHDVISF 82

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           N +++ L RA + ET +    +M ++   ++ T+ + ++    A    +AV + E M   
Sbjct: 83  NILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKAR 142

Query: 309 KFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367
                V T   L++ L + SK+    ++L + L     PNL TY  LL G CR + + +A
Sbjct: 143 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDA 202

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
             +  +M  +G  P+VV +  +++GL K+G+  DA  +   M  KG +P++  Y ++I  
Sbjct: 203 LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLING 262

Query: 428 FCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            CK +                       Y+ +I G     R+D    LL  ++ RGCPPD
Sbjct: 263 LCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 322

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            + Y+ LI  +      DEA  +Y+ M   G    + TY+ ++    + G  +    +  
Sbjct: 323 VILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLA 382

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            M+R G  P   +Y  LI GL   +   EA + +EEM         + YN     + R  
Sbjct: 383 RMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 442

Query: 588 R 588
           R
Sbjct: 443 R 443



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 162/321 (50%), Gaps = 19/321 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   ++      E  +A  +FE M   +    + T N LL+ L R+   + A  LF ++
Sbjct: 12  TYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEM 71

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
             R + ++ ++ +L+ G CR   +  A   + +M D+   P+V+ ++++++GL K  + S
Sbjct: 72  LDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVS 130

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            A++L E MKA+G SP+V +YTI++   CK++               ++   +++L+EM 
Sbjct: 131 QAVELLESMKARGCSPDVITYTILVDGLCKES---------------KVAAAWEVLREML 175

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           + GC P+ +TYN+L+  +   +   +A+ + ++M   G  P + TY  ++    + G  +
Sbjct: 176 DAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVK 235

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +  +MI +G  PD   Y +LI GL   D+  E+   L   +  G+K  V+ Y+   
Sbjct: 236 DACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVI 295

Query: 581 ADLSRAGRSYVLDELAQKMRF 601
             L R+ R   LDE  + + +
Sbjct: 296 YGLCRSNR---LDEACRLLLY 313



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKN 363
           M  +  +  V T N L++ L ++  P  AQ LF+ +K    +P++ TY  LL G  R   
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L  A  ++ EM+D+    DV++ NI++ GL + GK   A++ F  M  +  SPNV +Y++
Sbjct: 61  LERAMALFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYSV 118

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I   CK N               R+    +LL+ M+ RGC PD +TY  L+  +  +  
Sbjct: 119 LIDGLCKAN---------------RVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 163

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
              A  + +EM+ +G  P + TYN ++    +         +  +M  RGC P+  +Y  
Sbjct: 164 VAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 223

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           LI GL    R  +A   L +M++KG    ++ YN     L +A
Sbjct: 224 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKA 266



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 33/178 (18%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + GC P+ +TYN+LI  +     PD A  +++ M      P++ TYN ++   F+TG 
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 519 YEMGRKVWDEMIRRG---------------------------------CCPDDNSYTVLI 545
            E    ++ EM+ R                                  C P+  +Y+VLI
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL   +R  +A + LE M  +G    V+ Y      L +  +     E+ ++M  +G
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 156/312 (50%), Gaps = 27/312 (8%)

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+  L GR +      +L + L+ R  P++ TYT+LL   C+     +A ++ +EM
Sbjct: 160 TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 219

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------W 426
            DKG  PD+V +N+++ G+ + G+  DAI+  + + + G  PN  SY I++        W
Sbjct: 220 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 279

Query: 427 ------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                       K C  N   +  LI+    +  ++   ++L+++ + GC P+ L+YN L
Sbjct: 280 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 339

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +     QK  D+A+     MV  G  P I +YN ++ +  ++G  ++  ++  ++  +GC
Sbjct: 340 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P   SY  +I GL    ++ EA + L EM+ KG++  ++ Y+  AA L R       D 
Sbjct: 400 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE------DR 453

Query: 595 LAQKMRFSGKFE 606
           +   +R  GK +
Sbjct: 454 IEDAIRAFGKVQ 465



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 23/360 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            YN+M++    A Q +    ++ EM  +      T+   +           A+A+ + M 
Sbjct: 128 AYNAMVAGYCGAGQLDAARRLVAEMPVEP--DAYTYNTLIRGLCGRGRTANALAVLDEML 185

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           + +    V T   LLE   +    K+A  L D+++ +  TP++ TY V++ G C+   + 
Sbjct: 186 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 245

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A      +   G +P+ V++NI+L+GL    +  DA +L   M  KG  PNV ++ ++I
Sbjct: 246 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 305

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C++                    N+  Y  L+  F  +++MD     L  M  RGC 
Sbjct: 306 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY 365

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++YN L+  +      D AV +  ++   G  P + +YN ++    + G  +   ++
Sbjct: 366 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 425

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            +EM+ +G  PD  +Y+ +  GL  +DR  +A +   ++ + G++   + YN     L +
Sbjct: 426 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 485



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 164/383 (42%), Gaps = 57/383 (14%)

Query: 244 NSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF 302
           ++ TYN+++  + GR R    +  + E +  + +  + T+ I + A       K+A+ + 
Sbjct: 157 DAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 216

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M        + T N ++  + +  ++    + L +   +   PN  +Y ++L G C  
Sbjct: 217 DEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTA 276

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           +   +A  +  EM  KG  P+VV  N+++  L + G    A+++ E +   G +PN  SY
Sbjct: 277 ERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSY 336

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             ++  FCKQ                    +   Y  L+T       +D+  +LL ++++
Sbjct: 337 NPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD 396

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE- 520
           +GC P  ++YN +I  +       EA+ +  EMV  G +P I TY+ I     +    E 
Sbjct: 397 KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIED 456

Query: 521 ----------MGRK------------------------VWDEMIRRGCCPDDNSYTVLIG 546
                     MG +                        ++  MI  GC P++++YT+LI 
Sbjct: 457 AIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 516

Query: 547 GLISQDRSGEAYKYLEEMLEKGM 569
           GL  +    EA   L+E+  +G+
Sbjct: 517 GLAYEGLIKEARDLLDELCSRGV 539



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 142/296 (47%), Gaps = 17/296 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ +YN ++  L  A ++E    ++ EMG+KG   ++ TF + ++        + A
Sbjct: 258 GCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 317

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           + + E + KY       + N LL    + K   +A    D +  R   P++ +Y  LL  
Sbjct: 318 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 377

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR   +  A  + +++ DKG  P ++++N +++GL K GK  +A++L   M +KG  P+
Sbjct: 378 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 437

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+ +    C+++               R++       ++++ G  P+ + YNA+I  
Sbjct: 438 IITYSTIAAGLCRED---------------RIEDAIRAFGKVQDMGIRPNTVLYNAIILG 482

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +  ++    A+ ++  M+ +G  P   TY ++++     G  +  R + DE+  RG
Sbjct: 483 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 124/296 (41%), Gaps = 53/296 (17%)

Query: 361 VKNLMEAGRVWN-EMIDKGFKPDVVAHNIM------------------------------ 389
           +K L  +GR      +     PDV+A+N M                              
Sbjct: 103 IKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYN 162

Query: 390 --LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA-------------- 433
             + GL   G+ ++A+ + + M  +   P+V +YTI++   CK++               
Sbjct: 163 TLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK 222

Query: 434 ------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
                   Y  ++ G     R+D   + LK +   GC P+ ++YN ++K +   +  ++A
Sbjct: 223 GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA 282

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             +  EM + G  P + T+NM++    + G  E   +V +++ + GC P+  SY  L+  
Sbjct: 283 EELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 342

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              Q +  +A  +L+ M+ +G    ++ YN     L R+G   V  EL  +++  G
Sbjct: 343 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG 398



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 23/246 (9%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           K G   NS +YN ++    + ++ +  ++ L+ M  +G    + ++   + A   + E  
Sbjct: 326 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 385

Query: 297 KAVAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYT 352
            AV   EL+++ K K     +   N +++ L ++   KEA +LL + +     P++ TY+
Sbjct: 386 VAV---ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 442

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            +  G CR   + +A R + ++ D G +P+ V +N ++ GL K  +   AI LF  M   
Sbjct: 443 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 502

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  PN  +YTI               LI G      +    DLL E+  RG     L   
Sbjct: 503 GCMPNESTYTI---------------LIEGLAYEGLIKEARDLLDELCSRGVVRKSLINK 547

Query: 473 ALIKLM 478
             I+L+
Sbjct: 548 GAIRLL 553


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 193/416 (46%), Gaps = 29/416 (6%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           I  +  LV  +L+R  +    A +FF      P ++H+  +Y+  + I  R R   ++ S
Sbjct: 63  IQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSYSHHPSSYDHAIDISARLRDSPSLRS 122

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++  M    L  + +TF I    +A+A +  +AV +F  M+++     + + N +L+ L 
Sbjct: 123 LVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLC 182

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +SK  + A  LF   K +F  +  +Y V++ GWC +K   +A  +  EM+ +G  P++ +
Sbjct: 183 KSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTS 242

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N ML+G  + G+ ++A   F  MK +                C+ +   YT +I GFG 
Sbjct: 243 YNTMLKGYFRAGQINEAWDFFLEMKKRD---------------CEIDVITYTTVIHGFGV 287

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +     +   M ++G  P   TYNA I+++  +   D A+ I++EMV  G+ P   T
Sbjct: 288 AGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSIT 347

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN++++     G  E   +    M   GC P+  +Y ++I     +    +A    ++M 
Sbjct: 348 YNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKM- 406

Query: 566 EKGMKAPVLD-YN---------KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
             G   P LD YN         K + DL  AG   +L E+  +     KF  + VL
Sbjct: 407 TSGDCLPNLDTYNILISAMFVRKKSDDLLVAGN--LLIEMVDRGFVPRKFTFNRVL 460


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 171/368 (46%), Gaps = 26/368 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++  L +A   E    +  +M  +G + ++ T+ + +N         +A  + + M
Sbjct: 74  TYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 133

Query: 306 NKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLTTYTVLLGGWCR 360
            +        + T N  L+ L +  +  EA  L   L+    R +P+  T++ L+ G C+
Sbjct: 134 TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCK 193

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              + EA  V+++MI  G+ P+V+ +N ++ GL K  K   A  + E M  KG +P+V +
Sbjct: 194 CGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT 253

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-----PDGLTYNALI 475
           Y++++  FCK +               R+D   +LL  M  RGC      PD +T+N LI
Sbjct: 254 YSVLVDAFCKAS---------------RVDEALELLHGMASRGCTPNVLVPDKVTFNILI 298

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    ++A  +++EMV    +P + T+  ++    + G  E  R + D M   G  
Sbjct: 299 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 358

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P+  +Y  L+ GL    R  EA ++LEEM+  G     + Y      L RA R+    +L
Sbjct: 359 PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQL 418

Query: 596 AQKMRFSG 603
             +++  G
Sbjct: 419 VSELKSFG 426



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 167/364 (45%), Gaps = 25/364 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++ T+++++  L +  Q +   S+ ++M   G + ++ T+   +N    A + ++A A+ 
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTTYTVLLG 356
           E M        V T + L++   ++    EA  L   +  R        P+  T+ +L+ 
Sbjct: 240 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIA 299

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+  N  +A  ++ EM+ K  +PDV+    +++GL K G+   A  + ++M   G  P
Sbjct: 300 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           NV +Y  ++   CK                 R++     L+EM   GC PD +TY +L+ 
Sbjct: 360 NVVTYNALVHGLCKSG---------------RIEEACQFLEEMVSSGCVPDSITYGSLVY 404

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +      D+A+++  E+   G+ P   TYN+++   +++G  E    V +EM+ +G  P
Sbjct: 405 ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 464

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  ++     GL          + L  +L KGM   + D    ++ L    RS  LD++ 
Sbjct: 465 DSFTFAACFSGLHRSGNLAGTMELLRVVLAKGM---LPDATTCSSILDWVCRSGKLDDVK 521

Query: 597 QKMR 600
             ++
Sbjct: 522 AMIK 525



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 139/293 (47%), Gaps = 23/293 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           N +L++L R+     A  +F  +  +    P + TY  ++ G C+  +L     ++ E++
Sbjct: 5   NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           ++G  PDVV +N +++ L K G   +A +L   M ++G  PNV +Y+++I   CK     
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG--- 121

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                       R+D   +L++EM  + C   P+ +TYN+ +  +  Q M  EA  + + 
Sbjct: 122 ------------RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 169

Query: 494 MVRSG---FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + R G     P   T++ ++    + G  +    V+D+MI  G  P+  +Y  L+ GL  
Sbjct: 170 L-RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCK 228

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            D+   A+  +E M++KG+   V+ Y+       +A R     EL   M   G
Sbjct: 229 ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 281


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 189/418 (45%), Gaps = 34/418 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN +++ L +  + E    ++EEM   GL +S  T+   +N F       +A
Sbjct: 245 GCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEA 304

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
             + E M   +    + T N L+  L +       +L F D LK +FTP++ ++  LL G
Sbjct: 305 FDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYG 364

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR   + EA  +++E+  +   P V+ +N ++ GL   G    A++L + M  +G  P+
Sbjct: 365 YCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPD 424

Query: 418 VRSYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +YTI                    M+ K  K +   Y   I G        + + + +
Sbjct: 425 IFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQE 484

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM   G PPD +TYN  +  +  Q   +EA  + + MV  G  P   TY  I+  + + G
Sbjct: 485 EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNG 544

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +    R+V++EM+ +G  P   +YTVLI    ++     A+ Y  +MLEK + A V+ YN
Sbjct: 545 HLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYN 604

Query: 578 KFAADLS---RAGRSY-VLDELAQKMRFSGKFEVSNV------LARWAETTKNRVYRK 625
                L    R   +Y   DE+ +K     KF  + +      +  W E    R+YR+
Sbjct: 605 AIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEAL--RLYRE 660



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 163/403 (40%), Gaps = 57/403 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN +++   +   F     ++EEM   +   ++ T+   M       +    
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGV 339

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--------------- 343
              F  M K KF   + + N LL    R+    EA LLFD+LK R               
Sbjct: 340 RLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHG 399

Query: 344 ---------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                                  P++ TYT+L+ G  ++  +  A   +NEM+ KG KPD
Sbjct: 400 LCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD 459

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
             A+N  + G +KI   S A  + E M A G  P+V +Y + +   C+Q           
Sbjct: 460 RFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLE 519

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    +   YT +I GF     +    ++  EM  +G  P  +TY  LI     ++
Sbjct: 520 NMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQ 579

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M D A   + +M+       + TYN I+     T   +   K +DEM  +G  P+  SYT
Sbjct: 580 MLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYT 639

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +LI    +     EA +   EML++ ++     ++ F  +L R
Sbjct: 640 ILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHR 682



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 173/424 (40%), Gaps = 48/424 (11%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL-------------GRA 258
           +L + VL   R   R A RFF W   +P F  +   + +++ IL              R 
Sbjct: 86  HLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERV 145

Query: 259 RQFE-------------TMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
             FE               + + ++M   GLL  ++     +          KA  ++ +
Sbjct: 146 VSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGM 205

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M ++  K  V T N +L++  +     +A  L  +++ R   PN  TY VL+ G  +   
Sbjct: 206 MEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE 265

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  +  EM++ G       +N ++ G  + G   +A  L E M  +   P + +Y  
Sbjct: 266 LEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNT 325

Query: 424 MIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +++  CK                     +   +  L+ G+     +   + L  E++ R 
Sbjct: 326 LMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRD 385

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P  +TYN LI  + +    D A+R+ KEM   G  P I TY +++   F+ G   M R
Sbjct: 386 LVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMAR 445

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
             ++EM+ +G  PD  +Y   I G +    +  A+   EEML  G    V+ YN F   L
Sbjct: 446 GFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHAL 505

Query: 584 SRAG 587
            + G
Sbjct: 506 CQQG 509



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +V+D   +M   G  PD    N ++++++ + +  +A  +Y  M + G KPT+ TYN ++
Sbjct: 166 LVFD---KMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTML 222

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            SY + G  +   ++  EM  RGC P+D +Y VL+ GL  +    +A   +EEML  G+ 
Sbjct: 223 DSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLN 282

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV-------LARWAETTKNRVY 623
                YN       + G      +L ++M     F   +        L +W + T  R+ 
Sbjct: 283 VSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLR 342

Query: 624 RKDRIET 630
             D +++
Sbjct: 343 FSDMLKS 349


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 190/411 (46%), Gaps = 21/411 (5%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           +I++V  ++   F  +  +   LDE GIN +++LV  +LERF +    A   F WA ++ 
Sbjct: 34  DIDKVKGILKRHFPSEDAVVKALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQT 93

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G+ H  R Y+ ++ ILG+ ++F  M  ++ EM E  G +S  T  I +   A++   K  
Sbjct: 94  GYVHTPRLYDLVVDILGKCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDV 153

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + +   + KY+ K     +N ++  L +    K+A  +F + K   T +  ++ +L+ G+
Sbjct: 154 IDVLRGLEKYRVKKDTVALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGY 213

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C  + L +A +   EM   GF+PD  ++   ++   K     +   +   M  KG  P+V
Sbjct: 214 CEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDV 273

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y+I I                       CK +A  ++ LI   G   R++  + + ++
Sbjct: 274 IAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFED 333

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME  G   D  TYNA+I      +  + A+++ + M  +  KP + TY  ++K   +  +
Sbjct: 334 MENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKD 393

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            ++ + +   M       D ++Y +LI  L    +   A  + ++ +  G+
Sbjct: 394 MKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGI 444



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 37/233 (15%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K GF  ++ +Y   +    + + F  +  +L EMGEKG    +  + I + A   A++ 
Sbjct: 230 EKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGKARKI 289

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD----------------- 338
            +A+ ++E MNK   K      + L+  LGRS    +A  +F+                 
Sbjct: 290 NEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAM 349

Query: 339 --------------KLKHRF-----TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
                         KL  R       P+L TY  LL   C++K++     + + M +   
Sbjct: 350 IYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNV 409

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           + D+  + +++  L + GK   A   F+     G  P  R+Y I++ +  + N
Sbjct: 410 RIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLKELGQNN 462



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYN 507
           V D+L+ +E+     D +  N ++  +  Q    +A  ++ E     FK +I    H++N
Sbjct: 153 VIDVLRGLEKYRVKKDTVALNMVMHALAKQGGAKDAYSVFLE-----FKDSITLDSHSFN 207

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  Y +    +  RK  +EM + G  PD +SYT  I     Q         L EM EK
Sbjct: 208 ILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEK 267

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G +  V+ Y+ +   L +A +     E+ +KM
Sbjct: 268 GCEPDVIAYSIYIRALGKARKINEALEVYEKM 299


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 167/376 (44%), Gaps = 18/376 (4%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D  M   L+     L+  LV DV+   +     A  FF WAG + G++H   TY  M+  
Sbjct: 133 DAEMGKQLERLKFKLNPGLVCDVVVNQKDLHL-AKCFFTWAGQQDGYSHTVGTYTLMIKR 191

Query: 255 LGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L  A++ + +V +L  M ++G  +SM      +  F +      A+ IF  M  +     
Sbjct: 192 LAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPS 251

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
            +  N +LE L +      A ++F KL + R  P+  T+ + +  + R   L  A     
Sbjct: 252 TNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQ 311

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EMI  G  P V    ++++ L+K G   +A K F  MK      N+R         C  N
Sbjct: 312 EMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMK------NLR---------CSPN 356

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
              YT L+ G     R++   ++  EM+E  C PD + YN LI  +      D A  ++K
Sbjct: 357 VVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFK 416

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM   G  P + TYN+++    + G      +++ ++  +G  PD  +Y  LI  L    
Sbjct: 417 EMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGG 476

Query: 553 RSGEAYKYLEEMLEKG 568
           +  +    ++EM+EKG
Sbjct: 477 QMDKVLAIIKEMVEKG 492



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 196/424 (46%), Gaps = 57/424 (13%)

Query: 237  DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKER 295
            +K G   +  TY+S+M+   +  Q E  +S+ +EM  KG ++ + T+ + +N    + + 
Sbjct: 590  EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 296  KKAVAIF---------ELMNKYK-------------FKAGV-----------DTI--NCL 320
             +A+ +F          L+  YK             F   +           DT   N +
Sbjct: 650  DQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIM 709

Query: 321  LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
            +  L +S    EA  L D +K++   P+L TYT LL G  +   L EA  ++ +M ++G 
Sbjct: 710  VNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769

Query: 380  KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI-------------- 425
            +PDVVA+  +++ L K GK S A+ +F  M  K   P+V +Y+ +I              
Sbjct: 770  EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYY 829

Query: 426  ------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                   K C  N  VY+ LI  FG +  +D   +L +EM+ R CPP+ +TYN L+  + 
Sbjct: 830  FFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLA 889

Query: 480  IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 + A ++ +EM + G  P + TYN+++    + G  +     +  M  +G  PD  
Sbjct: 890  KAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVI 949

Query: 540  SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            ++T LI  L   D+  EA +  + M E+G    V+ YN     L RAG+ +    +  +M
Sbjct: 950  TFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEM 1009

Query: 600  RFSG 603
            +  G
Sbjct: 1010 KVKG 1013



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 182/435 (41%), Gaps = 90/435 (20%)

Query: 241 FAHNSRT--YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
           F  N  T  YN ++ +L +   + + V +  ++G+  +    +TF+I +++F  +     
Sbjct: 246 FGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDP 305

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLG 356
           A    + M K     GV T   L++ L +S    EA   F+ +K+ R +PN+ TYT L+ 
Sbjct: 306 AAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVN 365

Query: 357 GWCRVKNLMEAGRVW-----------------------------------NEMIDKGFKP 381
           G  +   L EA  V+                                    EM D+G  P
Sbjct: 366 GLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVP 425

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI------------------ 423
           ++  +NIM+  L K G++ +A +LF  +K +G  P+V +Y                    
Sbjct: 426 NLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAII 485

Query: 424 --MIWK-------------------------------FCKQNAAVYTCLITGFGNRRRMD 450
             M+ K                               F       Y  L++ F +   +D
Sbjct: 486 KEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVD 545

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
               LL+ M++  C P  +TY  L+  +      DEAV + +EM + G +P++ TY+ +M
Sbjct: 546 EAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLM 605

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            S+++    E    ++DEM+R+GC  D ++Y+++I  L   D   +A      M E+GM+
Sbjct: 606 ASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGME 665

Query: 571 APVLDYNKFAADLSR 585
             + +Y    + L +
Sbjct: 666 PLLGNYKTLLSSLVK 680



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 146/301 (48%), Gaps = 19/301 (6%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            TY S++  LG++ + E   +M  +M E+G    +  +   M+      +   A+ IF  M
Sbjct: 740  TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLGGWCRVKNL 364
             K +    V T + L+++LG+    +EA   F+  +    TPN+  Y+ L+  + +   +
Sbjct: 800  AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMV 859

Query: 365  MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
              A  ++ EM  +   P++V +N +L GL K G+ + A KL E M+  G  P++ +Y I 
Sbjct: 860  DRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNI- 918

Query: 425  IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKM 483
                          LI G G    +D      K M+E+G  PD +T+ +LI+ L K+ K+
Sbjct: 919  --------------LIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKL 964

Query: 484  PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
              EA  ++  M   G+ P++ TYN+++    + G       ++ EM  +GC PD  +  +
Sbjct: 965  L-EACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGI 1023

Query: 544  L 544
            +
Sbjct: 1024 M 1024



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 182/386 (47%), Gaps = 33/386 (8%)

Query: 210 SHNLVVDVLERFRHARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++N+++ VL +    R+P A++ F    ++ G   +  TYN+++ +LG+  Q + +++++
Sbjct: 429 TYNIMISVLGK--AGRQPEAWQLFHDLKEQ-GAVPDVFTYNTLIDVLGKGGQMDKVLAII 485

Query: 269 EEMGEKG---LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA-GVDTINCLLENL 324
           +EM EKG   ++S ++          A    +  ++        FK+ G  T N L+   
Sbjct: 486 KEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSL-------GFKSLGEITYNTLMSAF 538

Query: 325 GRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
             +    EA  L + +K H   P + TYT L+ G  +   L EA  +  EM  +G +P V
Sbjct: 539 IHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSV 598

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           V ++ ++    K  +  +++ LF+ M  KG   +V +Y+++I   CK +           
Sbjct: 599 VTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSD----------- 647

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPT 502
                +D   D+   M+E G  P    Y  L+  L+K +K+ D A++I+ E+  S   P 
Sbjct: 648 ----DVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKI-DFALQIFNELQESSLVPD 702

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              YN+++    ++   +   K+ D M  +   PD  +YT L+ GL    R  EA+    
Sbjct: 703 TFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFT 762

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
           +M E+G +  V+ Y      L + G+
Sbjct: 763 KMTEEGHEPDVVAYTSLMDVLGKGGK 788



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 52/360 (14%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N  A A   ++A  +F  M +          N L++ LG++     A  LF ++
Sbjct: 359 TYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           K R   PNL TY +++    +     EA ++++++ ++G  PDV  +N +++ L K G+ 
Sbjct: 419 KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQM 478

Query: 400 SDAIKLFEVMKAKG--------------------------PSPNVRS-----YTIMIWKF 428
              + + + M  KG                          PS   +S     Y  ++  F
Sbjct: 479 DKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAF 538

Query: 429 --------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
                               C      YT L+ G G   R+D    LL+EME++GC P  
Sbjct: 539 IHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSV 598

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TY++L+     +   +E++ ++ EMVR G    + TY++++    ++ + +    V+  
Sbjct: 599 VTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGR 658

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M   G  P   +Y  L+  L+  ++   A +   E+ E  +      YN     L ++ R
Sbjct: 659 MKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNR 718



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 160/375 (42%), Gaps = 42/375 (11%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++  YN+++  LG+A + +    + +EM ++GL+ ++ T+ I ++    A  + +A  +F
Sbjct: 391 DAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLF 450

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
             + +      V T N L++ LG+     +   +  ++  +            GG C + 
Sbjct: 451 HDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEK------------GGECIIS 498

Query: 363 NLMEAGRVWN-EMIDK-------GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
               AG     E  D+       GFK    + +N ++   +  G   +A+KL EVMK   
Sbjct: 499 RDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE 558

Query: 414 PSPNVRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVY 453
             P V +YT ++                     + C+ +   Y+ L+  F  R + +   
Sbjct: 559 CIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESL 618

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L  EM  +GC  D  TY+ +I  +      D+A+ ++  M   G +P +  Y  ++ S 
Sbjct: 619 SLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSL 678

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +    +   ++++E+      PD   Y +++ GL+  +R  EA K ++ M  + +   +
Sbjct: 679 VKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDL 738

Query: 574 LDYNKFAADLSRAGR 588
             Y      L ++GR
Sbjct: 739 FTYTSLLDGLGKSGR 753



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 23/277 (8%)

Query: 228  AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
            AF  F    ++ G   +   Y S+M +LG+  +    + +   M +K  +  + T+   +
Sbjct: 757  AFNMFTKMTEE-GHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLI 815

Query: 287  NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
            ++       ++A   FE          V   + L+++ G+  +   A  LF++++ R   
Sbjct: 816  DSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCP 875

Query: 346  PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            PN+ TY  LL G  +   L  A ++  EM   G  PD+V +NI+++G+ K+G   +A   
Sbjct: 876  PNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESY 935

Query: 406  FEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGN 445
            F+ MK KG  P+V ++T +I    K                     +   Y  LI   G 
Sbjct: 936  FKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGR 995

Query: 446  RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
              ++     +  EM+ +GC PDG+T   + +++ +++
Sbjct: 996  AGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVRE 1032



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 15/260 (5%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           ++  + TYT+++      +      ++   M  +G +  +     +L         S A+
Sbjct: 178 YSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGAL 237

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++F  MK+ G +P+   Y  ++    K     Y   +  FG   +  I            
Sbjct: 238 EIFNQMKSFGCNPSTNMYNFVLELLVK--GGFYHSAVIVFGKLGQFRI------------ 283

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD  T+   +         D A    +EM++SG  P +HT+ +++ +  ++GN +   
Sbjct: 284 -QPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K ++ M    C P+  +YT L+ GL    R  EA +   EM E       + YN     L
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGL 402

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            +AG + +   L ++M+  G
Sbjct: 403 GKAGEADMACGLFKEMKDRG 422


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 168/372 (45%), Gaps = 22/372 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GFA +  TY +++  L +       + +L++M EKG    +  +   +++    +   
Sbjct: 169 KMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRAN 228

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+  F  M        V T + +L          EA  LF ++  R   PN  T+T+L+
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILV 288

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   ++EA RV+  M + G +PD   ++ +++G     +  +A KLF++M  KG +
Sbjct: 289 DGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFA 348

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+VR Y I+I   CK                     +   Y+ L+ GF    R  +   L
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            KEM   G  PD +TY+ L+  +      DEA R+ K M  S  +P I  YN++++    
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCN 468

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  E  R+++  +  +G  P   +YTV+I GL+ +  S EA +   +M+  G       
Sbjct: 469 FGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCT 528

Query: 576 YNKFAADLSRAG 587
           YN       R G
Sbjct: 529 YNVAIQGFLRNG 540



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 173/359 (48%), Gaps = 23/359 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            +N ++  L + + + T++S+ ++M    +  ++ T  I +N    +  R      F  +
Sbjct: 71  VFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSN-RDHVHFAFSAL 129

Query: 306 NKYKFKAGVD----TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCR 360
            K  FK G+     T   LL  L       +A  LFD++ K  F P+L TYT ++ G C+
Sbjct: 130 GKM-FKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           + +   A ++  +M +KG KPDVVA+N +++ L K  + ++A+  F  M  +G  PNV +
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           Y+ ++  FC               N  +++    L K+M  R   P+ +T+  L+  +  
Sbjct: 249 YSSILHGFC---------------NLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCK 293

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           + M  EA R+++ M  +G +P  +TY+ +M  Y      +  +K++D M+ +G  P    
Sbjct: 294 EGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRV 353

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           Y +LI G     R  EA   L EM ++ +    + Y+       +AGR  V  +L ++M
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEM 412



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 172/359 (47%), Gaps = 24/359 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N V+D L + R A   A  FF    D+ G   N  TY+S++       Q     S+ 
Sbjct: 212 VAYNTVIDSLCKDRRANE-AMYFFSEMVDQ-GIPPNVVTYSSILHGFCNLGQLNEATSLF 269

Query: 269 EEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           ++M G   + +  TF I ++         +A  +FE+M +   +    T + L++     
Sbjct: 270 KQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQ 329

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EAQ LFD +  + F P++  Y +L+ G C+ + L EA  + +EM D+   PD V +
Sbjct: 330 SQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTY 389

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           + +++G  + G+   A KLF+ M + G  P+  +Y+I++   CK                
Sbjct: 390 STLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQE 449

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +  +Y  LI G  N  +++   +L   +  +G  P  +TY  +I  +  + + +E
Sbjct: 450 SKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNE 509

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           A  ++++MV +G  P   TYN+ ++ + + G+     ++ +EM+ RG   D +++ +L+
Sbjct: 510 ACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 120/269 (44%), Gaps = 22/269 (8%)

Query: 329 LPKEAQLLFDKLKH-----RFTPNLTTYTVLLGGWC----RVKNLMEAGRVWNEMIDKGF 379
            PK    LF   +H       T N++  ++  GG+C     + ++ +A   +N+++    
Sbjct: 6   FPKFRSFLFFIHQHFTTSTASTTNISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRP 65

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
            P VV  N +L  L+K    S  I L + M      PNV + TI+I   C          
Sbjct: 66  LPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHS-------- 117

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                NR  +   +  L +M + G  P  +T+  L+  +  +    +AV+++ E+ + GF
Sbjct: 118 -----NRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGF 172

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P++ TY  I+K   + G+     ++  +M  +GC PD  +Y  +I  L    R+ EA  
Sbjct: 173 APSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMY 232

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +  EM+++G+   V+ Y+         G+
Sbjct: 233 FFSEMVDQGIPPNVVTYSSILHGFCNLGQ 261


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 178/393 (45%), Gaps = 23/393 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
           TY ++++ L R ++F+++ S++ ++ + GL     F  AM NAF+ +   K+A+ IF  M
Sbjct: 108 TYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKM 167

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKN 363
                K    T N L++  G + +P+E   L D +       PN  T+  L+  WC  K 
Sbjct: 168 KDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKR 227

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + EA  V  +M   G +PDVV +N +     + G+ S A  +   M+     PN R+  I
Sbjct: 228 ITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGI 287

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  +CK+                    N  ++  LI GF +    D V + L  MEE G
Sbjct: 288 IINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFG 347

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +T++ ++       + D+   I+ +MV++G +P IH ++++ K Y + G  E   
Sbjct: 348 VKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAE 407

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +   M + G  P+   +T +I G  S  +   A +  E+M E G+   +  +       
Sbjct: 408 SLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGY 467

Query: 584 SRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
             A      +EL Q M   G   V + +   A+
Sbjct: 468 GEAKEPQKAEELLQIMEQKGVAPVKSTIQLVAD 500



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 21/254 (8%)

Query: 330 PKEAQLLFDKLK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           P+EAQL+F+ L    HR  P L TYT LL    R K       + +++   G KPD V  
Sbjct: 87  PQEAQLIFNSLTEEGHR--PTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFF 144

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N M+    + G   +A+K+F  MK +G               CK   + +  LI G+GN 
Sbjct: 145 NAMINAFSESGNVKEAMKIFRKMKDRG---------------CKPTTSTFNTLIKGYGNA 189

Query: 447 RRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +    LL  M +E    P+  T+N+LI+    +K   EA  +  +M  SG +P + T
Sbjct: 190 GMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVT 249

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN + ++Y Q G       +  EM      P++ +  ++I G   + +  +A ++L  M 
Sbjct: 250 YNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMR 309

Query: 566 EKGMKAPVLDYNKF 579
             G+   ++ +N  
Sbjct: 310 NYGVHPNLVIFNSL 323



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 21/282 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TYN++     +  +      M+ EM    ++  E T  I +N +    + K A
Sbjct: 242 GLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDA 301

Query: 299 VAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +     M  Y     +   N L++   ++  +    EA  L ++   +  P++ T++ ++
Sbjct: 302 LRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVK--PDVVTFSTIM 359

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             W  V  + +   ++++M+  G +PD+ A +I+ +G ++ G+   A  L   M   G  
Sbjct: 360 NAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQ 419

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV                ++T +I+G+ +  +M+    + ++M E G  P+  T+  LI
Sbjct: 420 PNV---------------VIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLI 464

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
                 K P +A  + + M + G  P   T  ++  ++   G
Sbjct: 465 WGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHALG 506



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 470 TYNALIKLMKI---QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           T  +  KLM I   +  P EA  I+  +   G +PT+ TY  ++ +  +   ++    + 
Sbjct: 70  TVRSRTKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLI 129

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            ++ + G  PD   +  +I          EA K   +M ++G K     +N        A
Sbjct: 130 SKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNA 189

Query: 587 G 587
           G
Sbjct: 190 G 190


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 171/352 (48%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF+ N   Y +++    +  + E    +  EMG+ GL++ E T+ + ++       +K+ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             ++E M ++     + T NC++  L +    K+A  +FD+++ R  + N+ TY  L+GG
Sbjct: 253 FEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR     EA +V ++M      P+++ +N +++G   +GK   A+ L   +K++G SP+
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPS 372

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y +++  FC                    K +   YT LI  F     M+    L  
Sbjct: 373 LVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRS 432

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            MEE G  PD  TY+ LI    I+   +EA R++K MV    +P    YN ++  Y + G
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEG 492

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +     +++ +M  +   P+  SY+ LI  L  + +  EA   +E+M++ G+
Sbjct: 493 SSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGI 544



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 173/408 (42%), Gaps = 68/408 (16%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-------SMETFKIAMNAFAAAKERKK 297
           SR Y  +++   +++  ++ +    EM +KG +       ++ TF +  ++F        
Sbjct: 94  SRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFN 153

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
              I  +++ Y F  G+    C        ++ K   LL +  +  F+PN+  YT L+ G
Sbjct: 154 ESKIKVVLDVYSF--GIVIKGCC----EAGEIEKSFDLLVELREFGFSPNVVIYTTLIDG 207

Query: 358 WCRVKNLMEA----------GRVWNE-------------------------MIDKGFKPD 382
            C+   + +A          G V NE                         M + G  P+
Sbjct: 208 CCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPN 267

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           +  +N ++  L K G+  DA K+F+ M+ +G S N+ +Y  +I   C++           
Sbjct: 268 LYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMD 327

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    N   Y  LI GF +  ++     L ++++ RG  P  +TYN L+     + 
Sbjct: 328 QMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKG 387

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A ++ KEM   G KP+  TY +++ ++ ++ N E   ++   M   G  PD ++Y+
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYS 447

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           VLI G   + +  EA +  + M+EK ++   + YN       + G SY
Sbjct: 448 VLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSY 495



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + +  TYN ++S   R         M++EM E+G+  S  T+ I ++ FA +   + A
Sbjct: 368 GLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETA 427

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M +      V T + L+          EA  LF  +  +   PN   Y  ++ G
Sbjct: 428 IQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILG 487

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  +   A R++ +M +K   P+V +++ ++  L K  K  +A  L E M   G  P+
Sbjct: 488 YCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPS 547



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 14/172 (8%)

Query: 232 FCWAGDKPGFAHNSR------------TYNSMMSILGRARQFETMVSMLEEMGEKGLL-S 278
           FC  GD  G A   +            TY  ++    R+   ET + +   M E GL+  
Sbjct: 383 FCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPD 442

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           + T+ + ++ F    +  +A  +F+ M +   +      N ++    +      A  LF 
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFR 502

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++ +   PN+ +Y+ L+   C+ + L EA  +  +MID G  P     N++
Sbjct: 503 DMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 215/454 (47%), Gaps = 35/454 (7%)

Query: 159 DGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVL 218
           DG +S      VSY    +    E     +D+ +SL   M    D     +++N ++D L
Sbjct: 183 DGQDSSCSPDVVSYNIVINGFFNE---GQVDKAYSLFLEMGVSPDV----VTYNTIIDGL 235

Query: 219 ERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
            + +   R    F+     G KP    N+ TYN+++  L +A++ +    + ++M +KG+
Sbjct: 236 CKAQEVDRAEDVFQQMVEKGVKP----NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGV 291

Query: 277 -LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
             S  T+   ++    A+   +A  +F+ M     K    T N +++ L +++   +A+ 
Sbjct: 292 KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEG 351

Query: 336 LFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           +F ++  +   P+  TYT+++ G C+ +++  A  V+ +MIDKG KP+   +N ++ G L
Sbjct: 352 VFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYL 411

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
             G+  + ++  + M A    P+V +Y +++   CK                     +  
Sbjct: 412 STGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVT 471

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           +Y  ++ G+G +  +  ++DLL  M   G  P+   +N +I     + M DE + I+ +M
Sbjct: 472 IYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKM 531

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            + G  P + TY  ++ +  + G  +     +++MI  G  P++  +  L+ GL + D+ 
Sbjct: 532 KQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKW 591

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +  +   EML +G++  ++ +N    +L + GR
Sbjct: 592 EKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGR 625



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 173/376 (46%), Gaps = 23/376 (6%)

Query: 208 NLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           N+++N ++D L + +   R    F+     G KP    +  TYN+++  L +A+  +   
Sbjct: 295 NVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKP----DHVTYNTIIDGLCKAQAIDKAE 350

Query: 266 SMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN- 323
            + ++M +KG+     T+ I ++    A+   +A  +F+ M     K    T NCL+   
Sbjct: 351 GVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGY 410

Query: 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           L   +  +  Q + +   H   P++ TY +LL   C+     EA  +++ MI KG KP V
Sbjct: 411 LSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSV 470

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             + IML G  K G  S+   L  +M A G SPN R               ++  +I  +
Sbjct: 471 TIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHR---------------IFNTVICAY 515

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             R  +D V  +  +M+++G  P+ +TY  LI  +      D+AV  + +M+  G  P  
Sbjct: 516 AKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNN 575

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             +N ++        +E   +++ EM+ +G  PD   +  ++  L  + R  EA + ++ 
Sbjct: 576 VVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDS 635

Query: 564 MLEKGMKAPVLDYNKF 579
           M+  G+K  V+ YN  
Sbjct: 636 MVCMGLKPDVISYNTL 651



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 23/335 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM--GEKGLLSME--TFKIAMNAFAAAKERKKAVAIF 302
           +YN+++  L   R+ E    +L  M  G+    S +  ++ I +N F    +  KA ++F
Sbjct: 157 SYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF 216

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M        V T N +++ L +++    A+ +F ++  +   PN  TY  ++ G C+ 
Sbjct: 217 LEMG---VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKA 273

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + +  A  V+ +M+DKG KP  V +N +++GL K      A  +F+ M  +G  P+  +Y
Sbjct: 274 QEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTY 333

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             +I   CK  A               +D    + ++M ++G  PD LTY  +I  +   
Sbjct: 334 NTIIDGLCKAQA---------------IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKA 378

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +  D A  ++++M+  G KP   TYN ++  Y  TG +E   +   EM      PD  +Y
Sbjct: 379 QSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTY 438

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            +L+  L    +  EA    + M+ KG+K  V  Y
Sbjct: 439 GLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIY 473



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 35/364 (9%)

Query: 246 RTYNSMMSILGRAR---QFETMVS----MLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           R  N ++S++ RA+     +  VS    ML +   K      T+ I +  F      +  
Sbjct: 44  RALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELG 103

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ--LLFDKLKHRFTPNLTTYTVLLG 356
            A F L+ K  ++     +N LL+ L  +K   EA   LL    +      + +Y  LL 
Sbjct: 104 FAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLK 163

Query: 357 GWCRVKNLMEAGRVWNEMID---KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           G C  +   EA  + + M+D       PDVV++NI++ G    G+   A  LF  M   G
Sbjct: 164 GLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---G 220

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            SP+V +Y  +I   CK                     N   Y  +I G    + +D+  
Sbjct: 221 VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAE 280

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            + ++M ++G  P  +TYN +I  +   +  D A  ++++M+  G KP   TYN I+   
Sbjct: 281 GVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGL 340

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +    +    V+ +MI +G  PD+ +YT++I GL        A    ++M++KG+K   
Sbjct: 341 CKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNN 400

Query: 574 LDYN 577
             YN
Sbjct: 401 GTYN 404



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 163/374 (43%), Gaps = 17/374 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + N R +N+++    +    + ++ +  +M ++GL  ++ T+   ++A         A
Sbjct: 500 GISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDA 559

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           V  F  M            N L+  L    K  K  +L  + L     P++  +  +L  
Sbjct: 560 VLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCN 619

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +MEA R+ + M+  G KPDV+++N +++G     +  +A+KL + M + G  PN
Sbjct: 620 LCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN 679

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + SY  ++  +CK                 R+D  Y L +EM  +G  P   TYN ++  
Sbjct: 680 IVSYNTLLHGYCKAG---------------RIDNAYCLFREMLRKGVTPGVETYNTILNG 724

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       EA  +Y  M++S    +I TY++I+  + +   ++   K++  +       D
Sbjct: 725 LFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLD 784

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             ++ ++I GL    R  +A      +   G+   V+ Y   A +L   G    LD L  
Sbjct: 785 IITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFS 844

Query: 598 KMRFSGKFEVSNVL 611
            M  SG    S++L
Sbjct: 845 VMEKSGTAPNSHML 858



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 161/391 (41%), Gaps = 32/391 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERK 296
           + G + N  TY +++  L +  + +  V    +M  +G+      F   +       + +
Sbjct: 533 QQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWE 592

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL 355
           K   +F  M     +  +   N +L NL +     EA+ L D +      P++ +Y  L+
Sbjct: 593 KVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLI 652

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C    + EA ++ + M+  G KP++V++N +L G  K G+  +A  LF  M  KG +
Sbjct: 653 DGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVT 712

Query: 416 PNVRSY-TIM------------------------IWKFCKQNAAVYTCLITGFGNRRRMD 450
           P V +Y TI+                        +W  C      Y+ ++ GF      D
Sbjct: 713 PGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSIC-----TYSIILDGFCKNNCFD 767

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             + + + +       D +T+N +I  +      ++A+ ++  +  +G  P++ TY +I 
Sbjct: 768 EAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIA 827

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           ++  + G+ E    ++  M + G  P+ +    LI  L+ +     A  YL ++ EK   
Sbjct: 828 ENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFS 887

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
                 +   +  SR         L +K RF
Sbjct: 888 LEASTTSMLISLFSREEYQQHAKSLPEKCRF 918


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 20/280 (7%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            K    P L T+  LL G C    +M+A ++++EM+  G +PDV+ ++ ++ GL K+G  
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           + A++L + M+ KG  PNV +Y  +I   CK                     +   Y+ +
Sbjct: 62  TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           + GF N  R++    L K+M ER   P+ +T+  LI  +  ++M  EA  +++ M   G 
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P ++TYN ++  Y      +  +K+++ M R+GC P+  SY +LI G     R  EA  
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            L EM  K +   +  Y+       + GR     EL ++M
Sbjct: 242 LLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 173/377 (45%), Gaps = 28/377 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +  TY+++++ L +       + +L++M EKG   ++  +   +++    +   
Sbjct: 38  KMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVT 97

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
           +A+  F  M K      V T + +L    NLGR     EA  LF ++  R   PN  T+T
Sbjct: 98  EAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVN---EATSLFKQMVERNVIPNKVTFT 154

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L+ G C+ + + EA  V+  M +KG +PDV  +N +++G     +  +A KLF +M  K
Sbjct: 155 ILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRK 214

Query: 413 GPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIV 452
           G +PNVRSY I+I   CK                     +   Y+ L+ GF    R    
Sbjct: 215 GCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEA 274

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            +LLKEM   G  P+ +TY+ ++  +      DEA  + K M  S  +P I  Y ++++ 
Sbjct: 275 QELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEG 334

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
               G  E  R+++  +  +G  P   +YTV+I GL+    S EA +   EM   G    
Sbjct: 335 MCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPN 394

Query: 573 VLDYNKFAADLSRAGRS 589
              YN       R G +
Sbjct: 395 SCTYNVIIQGFLRNGDT 411



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 171/365 (46%), Gaps = 19/365 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D L + R     A  FF     K G   +  TY+S++       +     S+ 
Sbjct: 81  VAYNTIIDSLCKDRLVTE-AMDFFSEM-VKEGIPPDVFTYSSILHGFCNLGRVNEATSLF 138

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           ++M E+ ++  + TF I ++     +   +A  +FE M +   +  V T N L++     
Sbjct: 139 KQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSR 198

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EAQ LF+ +  +   PN+ +Y +L+ G C+   + EA  +  EM  K   PD+  +
Sbjct: 199 SQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTY 258

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           + ++ G  ++G+  +A +L + M + G  PN+ +Y+I++   CK                
Sbjct: 259 STLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG-------------- 304

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +D  ++LLK M+E    P+   Y  LI+ M      + A  ++  +   G +PT+ TY
Sbjct: 305 -HLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTY 363

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            +++    + G      +++ EM   GC P+  +Y V+I G +    +  A + +EEM+ 
Sbjct: 364 TVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVG 423

Query: 567 KGMKA 571
           KG  A
Sbjct: 424 KGFSA 428



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 21/319 (6%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKN 363
           M K   +  + T N LL  L       +A  LFD++ K    P++ TY+ ++ G C++ N
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
              A ++  +M +KG KP+VVA+N +++ L K    ++A+  F  M  +G  P+V +Y+ 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 424 MIWKFC------------KQ--------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++  FC            KQ        N   +T LI G   +R +   + + + M E+G
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD  TYNAL+     +   DEA +++  M R G  P + +YN+++  + ++G  +  +
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  EM  +   PD  +Y+ L+ G     R  EA + L+EM   G+   ++ Y+     L
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300

Query: 584 SRAGRSYVLDELAQKMRFS 602
            + G      EL + M+ S
Sbjct: 301 CKHGHLDEAFELLKAMQES 319


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 177/349 (50%), Gaps = 19/349 (5%)

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           +GR +    ++ +LEE G   ++ + ++ + ++ +  + E ++A+ + + M      A  
Sbjct: 127 IGRTKNASQIMGILEESG--AVIDVTSYNVLISGYCKSGEIEEALRVLDRMGVSPNAATY 184

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           D + C L +  R KL +  Q+L  +L+ +  P++ T TVL+   C+   + +A +++NEM
Sbjct: 185 DAVLCSLCD--RGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM 242

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
            +KG KPDVV +N++++G  K G+  +AI+  + + + G  P+V S+ +++   C     
Sbjct: 243 RNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGG-- 300

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                       R MD +  LL  M  +GC P  +T+N LI  +  + +  +A+ + + M
Sbjct: 301 ------------RWMDAM-KLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMM 347

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            + G  P   ++N +++ +      +   +  + M+ RGC PD  +Y +L+  L    + 
Sbjct: 348 PKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKV 407

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +A   L ++  KG    ++ YN     L + G++ +  EL ++M + G
Sbjct: 408 DDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKG 456



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 161/374 (43%), Gaps = 24/374 (6%)

Query: 237 DKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           D+ G + N+ TY++++ S+  R +  + M  +  ++  K    + T  + ++A       
Sbjct: 173 DRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGV 232

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            +A+ +F  M     K  V T N L++   +     EA     KL  +   P++ ++ ++
Sbjct: 233 GQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMI 292

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L   C     M+A ++   M+ KG  P VV  NI++  L + G    A+ + E+M   G 
Sbjct: 293 LRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGH 352

Query: 415 SPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYD 454
           +PN RS+  +I  FC                      +   Y  L+T      ++D    
Sbjct: 353 TPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVV 412

Query: 455 LLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +L ++  +GC P  ++YN +I  L+K+ K  + AV + +EM   G KP + T   ++   
Sbjct: 413 ILSQLSSKGCSPSLISYNTVIDGLLKVGK-AELAVELLEEMCYKGLKPDLITCTSVVGGL 471

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G      K +  + R    P+   Y  +I GL    ++  A  +L +M+ KG K   
Sbjct: 472 SREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTE 531

Query: 574 LDYNKFAADLSRAG 587
             Y      ++  G
Sbjct: 532 ATYTTLIKGITYEG 545



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 148/325 (45%), Gaps = 17/325 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN ++    +  + +  +  L+++   G    + +  + + +  +      A+ +   M
Sbjct: 253 TYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATM 312

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            +      V T N L+  L +  L  +A  + + + KH  TPN  ++  L+ G+C  K +
Sbjct: 313 LRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGI 372

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A      M+ +G  PD+V +NI+L  L K GK  DA+ +   + +KG SP++ SY  +
Sbjct: 373 DRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 432

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I    K   A               ++  +LL+EM  +G  PD +T  +++  +  +   
Sbjct: 433 IDGLLKVGKA---------------ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKV 477

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA++ +  + R   +P    YN I+    ++    +      +M+ +GC P + +YT L
Sbjct: 478 REAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTL 537

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGM 569
           I G+  +  + +A K   E+  +G+
Sbjct: 538 IKGITYEGLAEDASKLSNELYSRGL 562



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 23/244 (9%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P++   T L+  +C++     A ++   + + G   DV ++N+++ G  K G+  +A++
Sbjct: 111 SPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALR 170

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQN------------------AAVYTC--LITGFG 444
           + + M   G SPN  +Y  ++   C +                     V TC  LI    
Sbjct: 171 VLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATC 227

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
               +     L  EM  +GC PD +TYN LIK        DEA+R  K++   G +P + 
Sbjct: 228 KESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVI 287

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           ++NMI++S    G +    K+   M+R+GC P   ++ +LI  L  +   G+A   LE M
Sbjct: 288 SHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMM 347

Query: 565 LEKG 568
            + G
Sbjct: 348 PKHG 351



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 17/245 (6%)

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R   L E  R    M +KG  PDV+A   ++    KIG+  +A ++  +++  G   +V 
Sbjct: 91  RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVT 150

Query: 420 SYTIMIWKFCKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           SY ++I  +CK                  NAA Y  ++    +R ++     +L    + 
Sbjct: 151 SYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQS 210

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            C PD +T   LI     +    +A++++ EM   G KP + TYN+++K + + G  +  
Sbjct: 211 KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEA 270

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            +   ++   GC PD  S+ +++  L S  R  +A K L  ML KG    V+ +N     
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINF 330

Query: 583 LSRAG 587
           L + G
Sbjct: 331 LCQKG 335


>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 488

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 176/395 (44%), Gaps = 25/395 (6%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           +++E+ L   GI        +VL    +    A +FF WAG   G  H   T+N M+ +L
Sbjct: 56  QDIESALSSSGIVPEEECTNEVLRLSYNYPSSAVKFFRWAGR--GKKHPVHTWNLMVDLL 113

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+ + FE M   +  M ++  LS+ TF     ++  A    +AV  F++M++Y  K  V 
Sbjct: 114 GKNQLFEPMWDAVRSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVV 173

Query: 316 TINCLLENLGRSKLPKEAQL-LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
            +N LL  +          L  F+ +K +  P+  T+ +LL GW +  N  +A   + +M
Sbjct: 174 AVNSLLSAICSEDNQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDM 233

Query: 375 IDK-GFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           +   G+  D V A++  L  LL+ G   D ++  +VMK     P ++ +T  +    KQN
Sbjct: 234 VAHIGWNKDNVAAYDAFLMTLLRAGLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQN 293

Query: 433 AA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
            A                    +Y  +I    N   +D  + LL EM   G  PD LTYN
Sbjct: 294 DADHAVPVWDVMVSGELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYN 353

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            + + +   K   E  R + EMV++ + PT       +   F   + E   ++W  ++  
Sbjct: 354 MIFECLVKNKKARETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVEN 413

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
              P D S   L+ GL +  R  E  ++ E++L++
Sbjct: 414 RVKPLDESANALLIGLCNMSRFTEVKRFAEDILDR 448



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 18/282 (6%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV  F    + K K  V T N +++ LG+++L +        +K     +L+T+  +   
Sbjct: 88  AVKFFRWAGRGK-KHPVHTWNLMVDLLGKNQLFEPMWDAVRSMKQEQKLSLSTFASVFQS 146

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL-KIGKRSDAIKLFEVMKAKGPSP 416
           +C      EA   ++ M   G K DVVA N +L  +  +  + S  ++ FE +KAK P P
Sbjct: 147 YCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSEDNQTSFGLEFFEGIKAKVP-P 205

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT-YNALI 475
           +  ++ I++  + K+  A      T FG     D+V  +       G   D +  Y+A +
Sbjct: 206 DGDTFAILLEGWEKEGNAAKA--KTTFG-----DMVAHI-------GWNKDNVAAYDAFL 251

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +    + D+ VR  + M      P +  +   +    +  + +    VWD M+     
Sbjct: 252 MTLLRAGLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMVSGELV 311

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           P+   Y  +IG L +      A++ L+EM   G     L YN
Sbjct: 312 PNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYN 353


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 210/456 (46%), Gaps = 24/456 (5%)

Query: 154 SDGECD---GNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLS 210
           S   CD      S   I S+S  S A   +  +V +++ + +  +  +   L+E GI+ +
Sbjct: 77  SHANCDKYPNIESHKNIASLSLLSEASDSDAHKVGEILKKHYLSEDAVVEALNESGISAT 136

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           H+LV  +L+RF +    A   F WA ++ G+ H    YNSM+ ILG++R+F  M  +++E
Sbjct: 137 HDLVSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEIYNSMIDILGKSRKFSLMWDLVQE 196

Query: 271 M-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M G  G +S+ T    M       +  +A+  F  + K+      + +N L++ L R+  
Sbjct: 197 MSGLNGYVSLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLSKSTEAMNVLMDILARNGR 256

Query: 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            ++A+ +  + +   T +  +Y +L  G+C+ +   +A +   EM ++GF P+VV++   
Sbjct: 257 VEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAF 316

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKFC---KQNAA 434
           +E   +     +   +   M+ KG  P++ +YT+ I             + C   K+N  
Sbjct: 317 IEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGF 376

Query: 435 V-----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           V     Y  LI       R+   +++ +++E++G   D   Y A+I         + A++
Sbjct: 377 VLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALK 436

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  +M     KP + TY  ++K   +  + +M + + + M       D  +Y +L+ GL 
Sbjct: 437 LLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVSIDIVTYDLLVHGLR 496

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            Q +   A  + +E + KGM      Y     +L R
Sbjct: 497 KQGKLKYACFFFQEAVLKGMVPCDKTYKILLEELER 532



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 25/264 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  N  +Y + +   G  + F  +  +L EM EKG    + T+ + + A   A++  KA
Sbjct: 305 GFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKA 364

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + I E + +  F  G      L+ +L  S   K+A  +F+ + K     +L  Y  ++  
Sbjct: 365 LEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISA 424

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV----MKAKG 413
            C +     A ++ ++M +   KPDV  +      LLK+  R  ++K+ +     M    
Sbjct: 425 ACALSQDESALKLLHKMEEDSCKPDVQTY----APLLKMCCRKKSMKMLKFLLNHMFEND 480

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            S ++ +Y +++    KQ    Y C                  +E   +G  P   TY  
Sbjct: 481 VSIDIVTYDLLVHGLRKQGKLKYACF---------------FFQEAVLKGMVPCDKTYKI 525

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRS 497
           L++ ++ + M +   +I K M+R+
Sbjct: 526 LLEELERKNMAEMKGKIEKLMLRA 549



 Score = 38.5 bits (88), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 48/210 (22%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT-YNALIKLMKIQKMP------DEA 487
           +Y  +I   G  R+  +++DL++EM        GL  Y +L+ + K+ K        +EA
Sbjct: 173 IYNSMIDILGKSRKFSLMWDLVQEM-------SGLNGYVSLVTMGKVMKRLVRDGKYNEA 225

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR------------------------ 523
           +  ++ + + G   +    N++M    + G  E  R                        
Sbjct: 226 IDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSGY 285

Query: 524 ----------KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
                     K  +EM  RG  P+  SYT  I     Q         L EM EKG    +
Sbjct: 286 CKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPDL 345

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + Y  +   L +A +     E+ ++++ +G
Sbjct: 346 ITYTVYIRALGKARQINKALEICEEIKRNG 375


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 185/370 (50%), Gaps = 19/370 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFEL 304
           TYN+++++ G+    +  +++++++M   GL   + T+   ++   A    ++A+ +FE 
Sbjct: 216 TYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEE 275

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKN 363
           +    F+    T N LL+  G+S+ PKEA  +  +++ + F P++ TY  L+  + R   
Sbjct: 276 IKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGL 335

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  +  +M+DKG KPDV  +  +L G +  GK   A+++FE M+  G          
Sbjct: 336 LEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVG---------- 385

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N   +  LI  +G+R + + +  + KE++   C PD +T+N L+ +     M
Sbjct: 386 -----CKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGM 440

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   +++EM RS F P   T+N ++ +Y + G+++     +  M+  G  PD ++Y  
Sbjct: 441 DSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNA 500

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K L EM + G K   + Y+      +       ++ LA+++ +SG
Sbjct: 501 VLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEI-YSG 559

Query: 604 KFEVSNVLAR 613
             +   VL +
Sbjct: 560 TIKTHAVLLK 569



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 177/371 (47%), Gaps = 31/371 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N      ++SILG+  +     S+L  +   G  + +  +   + A+A  K+ + A+ +F
Sbjct: 143 NGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVF 202

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLP--KEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
             M +   +  + T N +L   G+  +P  K   L+ D   H   P+L TY  L+   CR
Sbjct: 203 GKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLIS-CCR 261

Query: 361 VKNLME-AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
             +L E A  ++ E+   GF+PD V +N +L+   K  +  +A+++ + M++    P+V 
Sbjct: 262 AGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVV 321

Query: 420 SYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y                      M+ K  K +   YT L++GF N  + ++  ++ +EM
Sbjct: 322 TYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM 381

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            + GC P+  T+NALIK+   +   +E V+++KE+      P I T+N ++  + Q G  
Sbjct: 382 RKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLI---GGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                V++EM R    P+ +++  LI   G   S D++  AYK    MLE G+   +  Y
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYK---RMLEAGVSPDLSTY 498

Query: 577 NKFAADLSRAG 587
           N   A L+R G
Sbjct: 499 NAVLATLARGG 509



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 22/364 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TY +++S    A + E  + + EEM + G   ++ TF   +  +    + ++ 
Sbjct: 350 GIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEM 409

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           V +F+ +   K    + T N LL   G++ +  E   +F+++K  RF P   T+  L+  
Sbjct: 410 VKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISA 469

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R  +  +A   +  M++ G  PD+  +N +L  L + G    + K+   MK  G  PN
Sbjct: 470 YGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPN 529

Query: 418 VRSYTIMIWKFC------KQNA---AVYTCLITGFGNRRRMDIVY----DLLKEME---- 460
             +Y+ ++  +       + NA    +Y+  I       +  ++     DLL E E    
Sbjct: 530 EVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFL 589

Query: 461 ---ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
              +RG  PD  T NA++ +   +KM  +A  I   M  SG   ++ +YN +M  Y +T 
Sbjct: 590 EFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTE 649

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N+    +++ E++ +G  PD  SY ++I      D   EA + +EEM        V+ YN
Sbjct: 650 NFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYN 709

Query: 578 KFAA 581
            F A
Sbjct: 710 TFIA 713



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 57/365 (15%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERK 296
           K G   N  T+N+++ + G   +FE MV + +E+   K    + T+   +  F       
Sbjct: 383 KVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDS 442

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +   +FE M + +F    DT N L+   GR     +A   + + L+   +P+L+TY  +L
Sbjct: 443 EVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVL 502

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVA------------------------------ 385
               R     ++ +V  EM D G KP+ V                               
Sbjct: 503 ATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIK 562

Query: 386 -HNIMLEGLLKIGKRSDAI----KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------- 431
            H ++L+ L+ +  + D +    + F   + +G SP+V +   M+  + ++         
Sbjct: 563 THAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEI 622

Query: 432 -----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      +   Y  L+  +           + +E+ ++G  PD ++YN +I     
Sbjct: 623 LNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCR 682

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
             M DEA RI +EM      P + TYN  + +Y     +     V   MI++GC P+ N+
Sbjct: 683 NDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNT 742

Query: 541 YTVLI 545
           Y  ++
Sbjct: 743 YNSIV 747



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 52/277 (18%)

Query: 159 DGNNSESEITSVSY-KSTADPREIERVCKVIDELFSLDRNMEAVLDE--CGINLSHNLVV 215
           DG    +E+T  S   + A+ RE+ER+  + +E++S      AVL +    +N   +L+V
Sbjct: 523 DGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLV 582

Query: 216 DVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG 275
           +    F   R            K G + +  T N+M+SI GR +       +L  M E G
Sbjct: 583 ETERAFLEFR------------KRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESG 630

Query: 276 L-LSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           L LS+ ++   M  ++  +   K+  IF E+++K     G++                  
Sbjct: 631 LTLSLTSYNSLMYMYSRTENFHKSEQIFREILDK-----GIE------------------ 667

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
                       P++ +Y +++  +CR   + EA R+  EM      PDVV +N  +   
Sbjct: 668 ------------PDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAY 715

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
                  +AI +   M  +G  PN  +Y  ++  +CK
Sbjct: 716 AADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCK 752



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 2/180 (1%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N +V   +++  G   R+     LL  +E  G   D   Y +LI      K   +A++++
Sbjct: 143 NGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVF 202

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            +M   G +PT+ TYN I+  Y + G  +     +  +M   G  PD  +Y  LI    +
Sbjct: 203 GKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRA 262

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
                EA    EE+   G +   + YN       ++ R     E+ ++M  S  F  S V
Sbjct: 263 GSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQME-SNSFRPSVV 321


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 180/366 (49%), Gaps = 28/366 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQF---ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G A N+ TYN++++   RA +    E +VS++ E G     ++ TF   +N    A   +
Sbjct: 40  GCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKP-NLVTFNSMVNGLCKAGRME 98

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +F+ M +      V + N LL    +     E+  +F ++  R   P++ T+T L+
Sbjct: 99  GARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 158

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  NL +A  +  +M ++G + + V    +++G  K G   DA+   E M+  G  
Sbjct: 159 HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQ 218

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
           P+V  Y  +I  +CK                     +   Y+ +I+G+     +D  + L
Sbjct: 219 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 278

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            ++M ++G  PD +TY++LI+ +  +K  ++A  +++ M++ G +P   TY  ++  + +
Sbjct: 279 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 338

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            GN E    + DEMIR+G  PD  +Y+VLI GL    R+ EA++ L ++  +    PV D
Sbjct: 339 EGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED---PVPD 395

Query: 576 YNKFAA 581
             K+ A
Sbjct: 396 NIKYDA 401



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 179/374 (47%), Gaps = 25/374 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A N  TYN ++  L    + E  V ++ +M   G   +  T+   + AF  A E   A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 299 VAIFELMNKY-KFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
             +  LM +    K  + T N ++  L ++   + A+ +FD++ +    P++ +Y  LL 
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+V  L E+  V++EM  +G  PDVV    ++    K G    A+ L   M+ +G   
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           N  ++T +I  FCK+                    +   Y  LI G+    RMD+  +L+
Sbjct: 185 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELI 244

Query: 457 KEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           +EME +   PD +TY+ +I    K+  + D A ++ ++M++ G  P   TY+ +++   +
Sbjct: 245 REMEAKRVKPDVVTYSTIISGYCKVGNL-DSAFQLNQKMLKKGVLPDAITYSSLIRGLCE 303

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
                   ++++ M++ G  PD+ +YT LI G   +    +A    +EM+ KG+   V+ 
Sbjct: 304 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 363

Query: 576 YNKFAADLSRAGRS 589
           Y+     LS++ R+
Sbjct: 364 YSVLINGLSKSART 377



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 164/365 (44%), Gaps = 41/365 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+ S++    +A   E  V+++ +M E+GL   E TF   ++ F        A
Sbjct: 146 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 205

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +   E M K   +  V   N L+     LGR  L +E  L+ +    R  P++ TY+ ++
Sbjct: 206 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE--LIREMEAKRVKPDVVTYSTII 263

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+V NL  A ++  +M+ KG  PD + ++ ++ GL +  + +DA +LFE M   G  
Sbjct: 264 SGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQ 323

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +YT +I   CK+                    +   Y+ LI G     R    + L
Sbjct: 324 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 383

Query: 456 LKEMEERGCPPDGLTYNAL------------IKLMK---IQKMPDEAVRIYKEMVRSGFK 500
           L ++      PD + Y+AL            + L+K   ++ +  EA ++Y+ M+   +K
Sbjct: 384 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 443

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
                Y++++  + + GN         +M+R G  P+  S   L+ GL  +    EA   
Sbjct: 444 LDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNA 503

Query: 561 LEEML 565
           ++++L
Sbjct: 504 IQDLL 508



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 16/261 (6%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           ++H   PN+ TY +L+   C    L EA  V  +M   G  P+ V +N ++    + G+ 
Sbjct: 2   VRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGEL 61

Query: 400 SDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
             A ++  +M+ +G + PN+ ++  M+   CK                 RM+    +  E
Sbjct: 62  DGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG---------------RMEGARKVFDE 106

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  PD ++YN L+          E++ ++ EM + G  P + T+  ++ +  + GN
Sbjct: 107 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 166

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E    +  +M  RG   ++ ++T LI G   +    +A   +EEM + G++  V+ YN 
Sbjct: 167 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 226

Query: 579 FAADLSRAGRSYVLDELAQKM 599
                 + GR  +  EL ++M
Sbjct: 227 LINGYCKLGRMDLARELIREM 247



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 16/196 (8%)

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           M   G +PNV +Y I++   C                R R++    ++ +M   GC P+ 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCA---------------RGRLEEAVGVVGDMRGAGCAPNA 45

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           +TYN L+         D A R+   M   G  KP + T+N ++    + G  E  RKV+D
Sbjct: 46  VTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFD 105

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           EM+R G  PD  SY  L+ G        E+     EM ++G+   V+ +        +AG
Sbjct: 106 EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAG 165

Query: 588 RSYVLDELAQKMRFSG 603
                  L  +MR  G
Sbjct: 166 NLEQAVALVAQMRERG 181



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 4/301 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +   YN++++   +  + +    ++ EM  K +   + T+   ++ +       
Sbjct: 214 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLD 273

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A  + + M K        T + L+  L   K   +A  LF+  L+    P+  TYT L+
Sbjct: 274 SAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 333

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+  N+ +A  + +EMI KG  PDVV +++++ GL K  +  +A +L   +  + P 
Sbjct: 334 DGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 393

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+   Y  ++    K        L+ GF  +  M     + + M +R    DG  Y+ LI
Sbjct: 394 PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILI 453

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     +A+  +K+M+RSGF P   +   +++  F+ G          +++   CC
Sbjct: 454 HGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLT--CC 511

Query: 536 P 536
           P
Sbjct: 512 P 512


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 182/400 (45%), Gaps = 29/400 (7%)

Query: 201 VLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ 260
           ++     +  H+ V   L  + +  + A  FF W   + GF H + TYN M+ ILG+  +
Sbjct: 168 IISPNSTSFDHSTVRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFE 227

Query: 261 FETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           F+ +  +++ M    +   +  TF+     +AAA   ++A+  +    ++  +      N
Sbjct: 228 FDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLRDETSYSN 287

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            L++ L   K   EA+ LF K      F  ++  Y ++L GW ++    +    W EM  
Sbjct: 288 -LIDALCEYKHVIEAEELFLKESKDLVFNDDVKIYNIILRGWFKMGWWKKCREFWEEMDR 346

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------- 428
           +G    + +++I ++   K GK   A+KL++ MK KG   +V +Y  +I           
Sbjct: 347 RGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDF 406

Query: 429 ------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C+ N   Y  +I       R+   Y +  +M E+G  P+ +TY+    
Sbjct: 407 SIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCFFG 466

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            ++    P + +R +  M+ SG +P + TY M+MK + + G       VW +M  +GC P
Sbjct: 467 CIE---KPKQILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSP 523

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA-PVLD 575
           D  +Y  LI  L+ +     A KY EEML KG+ A P +D
Sbjct: 524 DACAYNALIDALVQKGMVDLARKYEEEMLAKGLSAKPRVD 563



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 1/112 (0%)

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIY-KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           D  +Y+ LI  +   K   EA  ++ KE     F   +  YN+I++ +F+ G ++  R+ 
Sbjct: 281 DETSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDVKIYNIILRGWFKMGWWKKCREF 340

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           W+EM RRG C    SY++ +       +   A K  +EM +KG++  V+ YN
Sbjct: 341 WEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYN 392


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 33/368 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF---KIAMNAFAAAKE-- 294
           GF+ ++ TY  +M  L R  Q +   ++L ++     +   T     +A   F  AK+  
Sbjct: 305 GFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLL 364

Query: 295 -RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
                +A +E  + Y F   +D +      + +  L    +LL + +  RF PN+ TYT+
Sbjct: 365 YNNMVIAGYE-PDAYTFNIMIDGL------VKKGYLVSALELLNEMVAKRFEPNVITYTI 417

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G+C+   L EA  + N M  KG   + V +N ++  L K G   +A++LF  M  KG
Sbjct: 418 LINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKG 477

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
             P++ ++  +I   CK                     N   Y  L+  F  R  +   +
Sbjct: 478 CKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAF 537

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L+ EM  RGCP D +TYN LIK +      ++ + +++EM+  G  PTI + N+++   
Sbjct: 538 KLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGL 597

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +TG      K   +MI RG  PD  +Y  LI GL       EA     ++  +G++   
Sbjct: 598 CRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDA 657

Query: 574 LDYNKFAA 581
           + YN   +
Sbjct: 658 ITYNTLIS 665



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 168/384 (43%), Gaps = 28/384 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAM 286
           +   F  AG + G++H       ++  LG    F+ +  +L++M ++GLL  E+ F + M
Sbjct: 82  SMELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIM 141

Query: 287 NAFAAAKERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRF 344
             +  A    +A   + ++   Y       + N +L+ L     P+ A  + +D L    
Sbjct: 142 KHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGV 201

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P + T+ V++   C V  +  A  +  +M   G  P+ V +  ++  L +  + S+A++
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFG 444
           L E M      P+V+++  +I   C+                     +A  Y  L+ G  
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC 321

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR-IYKEMVRSGFKPTI 503
              ++D    LL ++      P+ + YN LI         +EA   +Y  MV +G++P  
Sbjct: 322 RMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDA 377

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           +T+N+++    + G      ++ +EM+ +   P+  +YT+LI G   Q R  EA + +  
Sbjct: 378 YTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNS 437

Query: 564 MLEKGMKAPVLDYNKFAADLSRAG 587
           M  KG+    + YN     L + G
Sbjct: 438 MSAKGLSLNTVGYNCLICALCKDG 461



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 156/361 (43%), Gaps = 26/361 (7%)

Query: 220 RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           RF  A+   +     AG +P    ++ T+N M+  L +     + + +L EM  K    +
Sbjct: 356 RFEEAKDLLYNNMVIAGYEP----DAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPN 411

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           + T+ I +N F      ++A  I   M+           NCL+  L +    +EA  LF 
Sbjct: 412 VITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFG 471

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           ++  +   P++ T+  L+ G C+   + EA  ++++M  +G   + V +N ++   L   
Sbjct: 472 EMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRD 531

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------------------VYTC- 438
               A KL + M  +G   +  +Y  +I   CK  A                   + +C 
Sbjct: 532 SIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCN 591

Query: 439 -LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI+G     +++     L++M  RG  PD +TYN+LI  +       EA  ++ ++   
Sbjct: 592 ILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSE 651

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G +P   TYN ++  +   G +     +  + +  G  P++ ++++LI  ++ +   G  
Sbjct: 652 GIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVKKIPWGAR 711

Query: 558 Y 558
           +
Sbjct: 712 F 712



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%)

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P   +YN ++ ++     P  A  ++ +M+  G  PT++T+ ++MK+       +   
Sbjct: 166 CDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSAC 225

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M + GC P+   Y  LI  L   +R  EA + LE+M     +  V  +N     L
Sbjct: 226 SLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGL 285

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            RAGR +   +L  +M   G
Sbjct: 286 CRAGRIHEAAKLLDRMLLRG 305


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 185/405 (45%), Gaps = 32/405 (7%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWA----GDKPGFAHNSRTYNSMMSILGRARQFETM 264
           ++HN+++D   RFR     A      +    G KPG      TYNS++  L + R+F+  
Sbjct: 193 VTHNVLIDA--RFRAGDVDAAIALVDSMANRGLKPGIV----TYNSVLKGLCKHRRFDKA 246

Query: 265 VSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
             +   M +  +   + +F I +  F    E K+AV  ++ M        V + +CL+  
Sbjct: 247 KEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGL 306

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             R      A     ++K     P+   YT+++GG+CR  ++ EA RV +EM+  G  PD
Sbjct: 307 FSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPD 366

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           VV +N +L GL K  +  DA KL   M+ +G +P++ ++T +I  +C+Q           
Sbjct: 367 VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFD 426

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    +   Y  LI G   +  +    +L  +M  R   P+ +TY+ LI     + 
Sbjct: 427 TLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKG 486

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             ++A     EMV+ G  P I TYN I+K Y ++GN + G++   +M +    PD  ++ 
Sbjct: 487 QVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFN 546

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            LI G I ++    A+     M ++ ++   + YN      S  G
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQG 591



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 171/361 (47%), Gaps = 17/361 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N ++    RA   +  +++++ M  +GL   + T+   +      +   KA  +F  M
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTM 253

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGGWCRVKNL 364
           ++      V + N L+    R    KEA   + +++HR+ TP++ +++ L+G + R   +
Sbjct: 254 DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEM 313

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             AG    EM   G  PD V + +++ G  + G  S+A+++ + M   G  P+V +Y  +
Sbjct: 314 DHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTL 373

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   CKQ+               R+     LL EMEERG  PD  T+  LI     Q   
Sbjct: 374 LNGLCKQH---------------RLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNF 418

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           + A++++  ++R   +P + TYN ++    + G+     ++WD+M  R   P+  +Y++L
Sbjct: 419 ENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSIL 478

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
           I     + +  +A+ +L+EM++KG    +  YN       R+G      +  QKMR    
Sbjct: 479 IDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNV 538

Query: 605 F 605
           F
Sbjct: 539 F 539



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 167/348 (47%), Gaps = 23/348 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELM 305
           +++ ++ +  R  + +   + L EM   GL+     + + +  F  A    +A+ + + M
Sbjct: 299 SFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEM 358

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
             +     V T N LL  L +     +A+ L ++++ R  TP+L T+T L+ G+CR  N 
Sbjct: 359 VGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNF 418

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A ++++ ++ +  +PDVV +N +++G+ + G  + A +L++ M A+   PN  +Y+I+
Sbjct: 419 ENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSIL 478

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   C++                    N   Y  +I G+     +      L++M +   
Sbjct: 479 IDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNV 538

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +T+N LI     ++    A  ++  M +   +P   TYNMI+  + + GN +   +
Sbjct: 539 FPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGR 598

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           V+  M   G  PD  +Y  LI G ++   S +A++  +EM+ +G  AP
Sbjct: 599 VFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGF-AP 645



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 138/321 (42%), Gaps = 22/321 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +   Y  ++    RA      + + +EM   G L  + T+   +N          A
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +   M +      + T   L+    R    + A  LFD L + R  P++ TY  L+ G
Sbjct: 387 EKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDG 446

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR  +L +A  +W++M  +   P+ + ++I+++   + G+  DA    + M  KG  PN
Sbjct: 447 MCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPN 506

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           +R+Y  +I  +C+                     +   +  LI G+     M   +++  
Sbjct: 507 IRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFN 566

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            ME+    PD +TYN +I     Q    +A R++K M  SG +P  +TY  ++  +   G
Sbjct: 567 IMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAG 626

Query: 518 NYEMGRKVWDEMIRRGCCPDD 538
           N +   ++ DEMI RG  PDD
Sbjct: 627 NSKQAFQLHDEMIHRGFAPDD 647



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 15/268 (5%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           LL  + R +     +++   L    TP    + +L+  + + +   EA   +  ++D   
Sbjct: 59  LLLRMSRRRGASRREIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRV 118

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
                A N +L  L + G    A + + ++ +     N  +  IM+  +CK         
Sbjct: 119 PVPASASNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKT-------- 170

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                     D    ++ EME+R   PD +T+N LI         D A+ +   M   G 
Sbjct: 171 -------LEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGL 223

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP I TYN ++K   +   ++  ++V+  M +    PD  S+ +LIGG        EA K
Sbjct: 224 KPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVK 283

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           + +EM  + +   V+ ++      SR G
Sbjct: 284 FYKEMQHRYVTPDVVSFSCLIGLFSRRG 311



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 66/154 (42%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           V+  LI  +   R+    ++  + + +   P      NAL+ ++     P  A   Y+ +
Sbjct: 89  VFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLV 148

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           + S  +   +T N+++ SY +T  ++    V  EM +R   PD  ++ VLI         
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDV 208

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             A   ++ M  +G+K  ++ YN     L +  R
Sbjct: 209 DAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRR 242


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 179/389 (46%), Gaps = 21/389 (5%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEK 274
           +++ F  A +      C+   +   A N RTYN +++ L +AR       +L+EM  G+ 
Sbjct: 13  IIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKS 72

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGR-SKLPKE 332
               + T+   +N F    E  +A  I  E++ +      V T   +++ L R  K+ + 
Sbjct: 73  VAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRA 132

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI-DKGFKPDVVAHNIMLE 391
            +++ +       P+  T++ L+ GWC  + + EA +++ E++    +KPDVV +  +++
Sbjct: 133 CEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALID 192

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           G  K G    A+K+  VM+ +   PNV +Y+ ++   CK                  +D 
Sbjct: 193 GFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG---------------DLDQ 237

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             DL + M  +GC P+ +TY  LI  +      D A  +  EM  +   P   +YN ++ 
Sbjct: 238 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM-LEKGMK 570
            Y + G  E  ++++ EM  + C PD  +YT L+ G  +  R  EA   LE M    G+ 
Sbjct: 298 GYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 357

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKM 599
             V+ Y+   A  SRA R     E  Q+M
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEM 386



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 171/387 (44%), Gaps = 24/387 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G A +  TY S++  L R  + +    M+ EM  KG+   + TF   +  +  A++  
Sbjct: 106 RDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVD 165

Query: 297 KAVAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           +A+ ++ E++    +K  V T   L++   +S  L K  ++L      +  PN+ TY+ L
Sbjct: 166 EALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSL 225

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G C+  +L +A  ++  M  KG  P+VV +  ++ GL    K   A  L + M A   
Sbjct: 226 LHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCC 285

Query: 415 SPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYD 454
            P+  SY  ++  +C+                     +   YTCL+ GF N  R++    
Sbjct: 286 PPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARF 345

Query: 455 LLKEME-ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           LL+ M+   G  PD +TY+ ++      K   EA    +EM+     P   TY+ ++   
Sbjct: 346 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL 405

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  +   +V   M+ +   P   ++  +IG L       EA+K L  M   G++  +
Sbjct: 406 CKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 465

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMR 600
           + Y       SR GR  +  EL + MR
Sbjct: 466 VTYTTLLEGFSRTGRMEIAYELFEVMR 492



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 134/276 (48%), Gaps = 18/276 (6%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           V T   +++   ++   K+A   F+K++    PN  TY V++ G C+ +   +A  V  E
Sbjct: 7   VVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKE 66

Query: 374 MID-KGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ 431
           M D K   PD+V ++ ++ G  K G+   A ++  E++   G +P+V +YT ++   C+ 
Sbjct: 67  MRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRD 126

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
                           +MD   ++++EM+ +G  PD  T++ALI      +  DEA+++Y
Sbjct: 127 G---------------KMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLY 171

Query: 492 KEMV-RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           KE++  S +KP + TY  ++  + ++GN E   K+   M  R C P+  +Y+ L+ GL  
Sbjct: 172 KEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 231

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
                +A      M  KG    V+ Y      L  A
Sbjct: 232 AGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 267



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 183/411 (44%), Gaps = 37/411 (9%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA--FRFFCWAGD 237
           E++R C+++ E+ + D     V+       ++  VVD L R     R     R     G 
Sbjct: 92  EMDRACEILREMVTRDGIAPDVV-------TYTSVVDGLCRDGKMDRACEMVREMKLKGV 144

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAKER 295
           +P    +  T++++++    AR+ +  + + +E+         + T+   ++ F  +   
Sbjct: 145 EP----DKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNL 200

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           +KA+ +  +M   K    V T + LL  L ++    +A  LF ++  +   PN+ TYT L
Sbjct: 201 EKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTL 260

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C    +  A  + +EM      PD V++N +L+G  ++G+  +A +LF+ M  K  
Sbjct: 261 IHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSC 320

Query: 415 SPNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVY 453
            P+  +YT ++  FC                       +   Y+ ++ G+   +R     
Sbjct: 321 LPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAA 380

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           + ++EM  R   P+ +TY++LI  +      D A+ + K MV    +P++ T+N ++ + 
Sbjct: 381 EFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGAL 440

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            + G+ +   K+   M   G  P   +YT L+ G     R   AY+  E M
Sbjct: 441 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 165/375 (44%), Gaps = 34/375 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++    ++   E  + ML  M G K + ++ T+   ++    A +  +A+ +F  M
Sbjct: 186 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 245

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGWCRVKNL 364
                   V T   L+  L  +     A+LL D++     P +  +Y  LL G+CR+  +
Sbjct: 246 TSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRI 305

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTI 423
            EA +++ EM  K   PD + +  ++ G     +  +A  L E MK A G  P+V +Y+I
Sbjct: 306 EEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSI 365

Query: 424 --------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
                               MI +    NA  Y+ LI G     R+D   ++LK M  + 
Sbjct: 366 VVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKR 425

Query: 464 CPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
             P   T+N++I  L ++  M DEA ++   M   G +P + TY  +++ + +TG  E+ 
Sbjct: 426 VEPSVGTFNSVIGALCRLGDM-DEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIA 484

Query: 523 RKVWDEM--------IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
            ++++ M              P+  +++ LI GL       +A   +EE+  +  +    
Sbjct: 485 YELFEVMRKKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEE 543

Query: 575 DYNKFAADLSRAGRS 589
           D       L RAGR+
Sbjct: 544 DCLAIVDGLLRAGRT 558



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
           A N+ TY+S++  L +A + +  + +L+ M  K +  S+ TF   + A     +  +A  
Sbjct: 392 APNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWK 451

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-----NLT---TYT 352
           +   M  +  + G+ T   LLE   R+   + A  LF+ ++ +        NL     ++
Sbjct: 452 LLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFS 511

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G C+ + + +A  V  E+  +  +P       +++GLL+ G+  +A KL   +   
Sbjct: 512 ALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKV 571

Query: 413 G 413
           G
Sbjct: 572 G 572


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 188/414 (45%), Gaps = 34/414 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN +++ L +  + E    ++EEM   GL +S  T+   +N F       +A  + 
Sbjct: 249 NDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLV 308

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRV 361
           E M   +    + T N L+  L +       +L F D LK +FTP++ ++  LL G+CR 
Sbjct: 309 EEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRT 368

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA  +++E+  +   P V+ +N ++ GL   G    A++L + M  +G  P++ +Y
Sbjct: 369 GCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTY 428

Query: 422 TI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           TI                    M+ K  K +   Y   I G        + + + +EM  
Sbjct: 429 TILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLA 488

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G PPD +TYN  +  +  Q   +EA  + + MV  G  P   TY  I+  + + G+   
Sbjct: 489 AGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRK 548

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            R+V++EM+ +G  P   +YTVLI    ++     A+ Y  +MLEK + A V+ YN    
Sbjct: 549 AREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIIN 608

Query: 582 DLS---RAGRSY-VLDELAQKMRFSGKFEVSNVL------ARWAETTKNRVYRK 625
            L    R   +Y   DE+ +K     KF  + ++        W E    R+YR+
Sbjct: 609 GLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEAL--RLYRE 660



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 163/403 (40%), Gaps = 57/403 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN +++   +   F     ++EEM   +   ++ T+   M       +    
Sbjct: 280 GLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGV 339

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--------------- 343
              F  M K KF   + + N LL    R+    EA LLFD+LK R               
Sbjct: 340 RLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHG 399

Query: 344 ---------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                                  P++ TYT+L+ G  ++  +  A   +NEM+ KG KPD
Sbjct: 400 LCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD 459

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
             A+N  + G +KI   S A  + E M A G  P+V +Y + +   C+Q           
Sbjct: 460 RFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLE 519

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    +   YT +I GF     +    ++  EM  +G  P  +TY  LI     ++
Sbjct: 520 NMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQ 579

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M D A   + +M+       + TYN I+     T   +   K +DEM  +G  P+  SYT
Sbjct: 580 MLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYT 639

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +LI    +     EA +   EML++ ++     ++ F  +L R
Sbjct: 640 ILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHR 682



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 173/424 (40%), Gaps = 48/424 (11%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL-------------GRA 258
           +L + VL   R   R A RFF W   +P F  +   + +++ IL              R 
Sbjct: 86  HLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERV 145

Query: 259 RQFE-------------TMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
             FE               + + ++M   GLL  ++     +          KA  ++ +
Sbjct: 146 VSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGM 205

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M ++  K  V T N +L++  +     +A  L  +++ R   PN  TY VL+ G  +   
Sbjct: 206 MEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE 265

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  +  EM++ G       +N ++ G  + G   +A  L E M  +   P + +Y  
Sbjct: 266 LEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNT 325

Query: 424 MIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +++  CK                     +   +  L+ G+     +   + L  E++ R 
Sbjct: 326 LMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRD 385

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P  +TYN LI  + +    D A+R+ KEM   G  P I TY +++   F+ G   M R
Sbjct: 386 LVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMAR 445

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
             ++EM+ +G  PD  +Y   I G +    +  A+   EEML  G    V+ YN F   L
Sbjct: 446 GFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHAL 505

Query: 584 SRAG 587
            + G
Sbjct: 506 CQQG 509



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +V+D   +M   G  PD    N ++++++ + +  +A  +Y  M + G KPT+ TYN ++
Sbjct: 166 LVFD---KMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTML 222

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            SY + G  +   ++  EM  RGC P+D +Y VL+ GL  +    +A   +EEML  G+ 
Sbjct: 223 DSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLN 282

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV-------LARWAETTKNRVY 623
                YN       + G      +L ++M     F   +        L +W + T  R+ 
Sbjct: 283 VSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLR 342

Query: 624 RKDRIET 630
             D +++
Sbjct: 343 FSDMLKS 349


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 181/406 (44%), Gaps = 36/406 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN MMS L +  + +   S+L+ M  +G++ ++ ++   +           A ++F
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
             M     K  V T + L++   +    ++A  LFD+ L     P   T+  ++ G C+V
Sbjct: 488 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKV 547

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA       +++GF P  + +N +++G +K G    A+ ++  M   G SPNV +Y
Sbjct: 548 GQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 607

Query: 422 TIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           T +I  FCK N                       Y+ LI GF  RR M+   DL  E+ E
Sbjct: 608 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLE 667

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P+ + YN++I   +     + A+  YK+M+       + TY  ++    + G    
Sbjct: 668 VGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVF 727

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              ++ EM+ +G  PD  ++ VL+ GL ++ +   A K LEEM  K M   VL YN   A
Sbjct: 728 ASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIA 787

Query: 582 DLSRAG--------------RSYVLDELAQKMRFSGKFEVSNVLAR 613
              R G              R  V D++   +  +GKF+    L+R
Sbjct: 788 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSR 833



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 260 QFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
             ++ +++  ++ E GL   + T+ + +     +   +KA  ++  M        V  +N
Sbjct: 340 NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 399

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
            LL    ++ L +EA  LFD+       N+ TY +++   C+   + EA  + + M+++G
Sbjct: 400 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 459

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
             P+VV++N M+ G  + G    A  +F  M A+   PNV +Y+I+I             
Sbjct: 460 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILID------------ 507

Query: 439 LITGFGNRRRMDI--VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMV 495
                GN ++ D     DL  +M      P   T+N +I  L K+ +M  EA    K  +
Sbjct: 508 -----GNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM-SEARDKLKNFL 561

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             GF P+  TYN I+  + + GN +    V+ EM   G  P+  +YT LI G    +R  
Sbjct: 562 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 621

Query: 556 EAYKYLEEMLEKGMKAPVLDYN 577
            A K  +EM EKG++  V  Y+
Sbjct: 622 LALKTRDEMREKGLELDVTAYS 643



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 19/260 (7%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL   T L+ G+C   NL  A  ++N++ + G  P+ V +++++EG    G    A +L+
Sbjct: 324 NLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELY 383

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK-------------------QNAAVYTCLITGFGNRR 447
             MK  G  P+V +   ++  + K                    N   Y  +++      
Sbjct: 384 TQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGG 443

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +MD    LL  M  +G  P+ ++YN +I     +   D A  ++ +M+    KP + TY+
Sbjct: 444 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYS 503

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++   F+ G+ E    ++D+M+     P D ++  +I GL    +  EA   L+  LE+
Sbjct: 504 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 563

Query: 568 GMKAPVLDYNKFAADLSRAG 587
           G     + YN       + G
Sbjct: 564 GFIPSCMTYNSIVDGFIKEG 583



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 19/279 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYNS++    +    ++ +++  EM E G+  ++ T+   +N F  +     A
Sbjct: 564 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 623

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
           +   + M +   +  V   + L++   + +  + AQ L F+ L+   +PN   Y  ++ G
Sbjct: 624 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 683

Query: 358 WCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           + R  N MEA  VW  +MI+     D+  +  +++GLLK G+   A  L+  M +KG  P
Sbjct: 684 F-RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVP 742

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ ++ +               L+ G  N+ +++    +L+EM+ +   P  L YN LI 
Sbjct: 743 DIITFHV---------------LVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIA 787

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
               +    EA  ++ EM+  G  P   TY++++   F+
Sbjct: 788 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFK 826



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 155/376 (41%), Gaps = 37/376 (9%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           LS N V+D L    +  + A R+F  A  + GF      Y  ++ IL R+ +       L
Sbjct: 58  LSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKL 117

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE-LMN---KYKFKAGVDTINCLLENL 324
                            +N + +       V   + L+N   ++ F+      N LL   
Sbjct: 118 -----------------LNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAY 160

Query: 325 GRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R+   + A   F+ +      P +    +LL    R   + E   ++N+M+ +G   D 
Sbjct: 161 IRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDH 220

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
              ++M+   LK G+  +A + F   K +G   +  +Y+I+I   CK+  +         
Sbjct: 221 FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS--------- 271

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
                 ++  +LL+EM+ERG  P   T+ ++I     Q    EA+R+ +EM+  G    +
Sbjct: 272 ------NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNL 325

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
                +MK Y   GN +    +++++   G  P+  +Y+VLI G  +     +A +   +
Sbjct: 326 VVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQ 385

Query: 564 MLEKGMKAPVLDYNKF 579
           M   G+   V + N  
Sbjct: 386 MKLNGIPPSVFNVNSL 401



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 28/282 (9%)

Query: 199 EAVLDECGINLSHNLVVD--VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           E  +  C   +++N +VD  + E    +    +R  C  G  P    N  TY S+++   
Sbjct: 563 EGFIPSC---MTYNSIVDGFIKEGNIDSALAVYREMCEFGVSP----NVVTYTSLINGFC 615

Query: 257 RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           ++ + +  +   +EM EKGL L +  +   ++ F   ++ + A  +F  + +        
Sbjct: 616 KSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRI 675

Query: 316 TINCLLENLGRSKLPKEAQLLFDK--LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
             N ++    R     EA L++ K  +  R   +L TYT L+ G  +   L+ A  ++ E
Sbjct: 676 VYNSMISGF-RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYME 734

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M+ KG  PD++  ++++ GL   G+  +A K+ E M  K  +P+V               
Sbjct: 735 MLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSV--------------- 779

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +Y  LI G+     +   + L  EM +RG  PD +TY+ LI
Sbjct: 780 LIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 821


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 178/364 (48%), Gaps = 5/364 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N    ++    L  A +F+    ++ EM  KG +  + T+   +     A + +KA
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKA 479

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            ++FE M +      V T   L+++  ++ L ++A+  FD++ H+  TPN+ TYT L+  
Sbjct: 480 FSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHA 539

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + + K +  A  ++  M+ +G KP+VV +  +++G  K G+   A +++  M+    S +
Sbjct: 540 YLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSD 599

Query: 418 VRSYTIMIWKFCK-QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  Y  +    C+  N   Y  L+ G     R+   ++LL  M   GC P+ + Y+A+I 
Sbjct: 600 MDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVID 659

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
              KI K+ D A  ++ +M   G+ P ++TY+  +   F+    ++  KV  +M+   C 
Sbjct: 660 GFCKIGKLQD-AQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCT 718

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P+   YT ++ GL    ++ EAYK + +M EKG    V+ Y        ++G+     EL
Sbjct: 719 PNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLEL 778

Query: 596 AQKM 599
            + M
Sbjct: 779 FRDM 782



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 191/426 (44%), Gaps = 73/426 (17%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AF+  C    K GF  +  TY+ ++  L  A + E   S+ EEM   G++ S+ T+ I +
Sbjct: 444 AFKIICEMMGK-GFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILI 502

Query: 287 NAFAAA---------------------------------KERKKAVA--IFELMNKYKFK 311
           ++F  A                                 K ++  VA  +FE+M     K
Sbjct: 503 DSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCK 562

Query: 312 AGVDTINCLLENLGRS-KLPKEAQLL--------------FDKLKHRFT--PNLTTYTVL 354
             V T   L++   ++ ++ K  Q+               + KL H     PN+ TY  L
Sbjct: 563 PNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGAL 622

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C+   + EA  + + M+  G +P+ + ++ +++G  KIGK  DA ++F  M  +G 
Sbjct: 623 VDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGY 682

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SPN+ +Y+  I    K N               R+D+V  +L +M E  C P+ + Y  +
Sbjct: 683 SPNLYTYSSFIDCLFKDN---------------RLDLVLKVLSKMLENSCTPNVVIYTEM 727

Query: 475 IK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +  L KI K  DEA ++  +M   G  P + TY  ++  + ++G  E   +++ +M  +G
Sbjct: 728 VDGLCKIGK-TDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG 786

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV-- 591
           C P+  +Y VLI    S     EAYK L+EM +      +L + K     S+   + +  
Sbjct: 787 CAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGL 846

Query: 592 LDELAQ 597
           LDEL++
Sbjct: 847 LDELSE 852



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 181/402 (45%), Gaps = 38/402 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  +  TYN+++ +  RA + +T   +  EM     + M+ + ++  A++  K  K   
Sbjct: 206 GYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFV-MDRYTLSCFAYSLCKGGKCRE 264

Query: 300 AIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           A F+L+++ + F       N ++  L  + L +EA  +  +++     PN+ TY +LL G
Sbjct: 265 A-FDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSG 323

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R   L    R+ + MI +G  P+    N ++    K    S A KLF+ M   G  P 
Sbjct: 324 CLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPG 383

Query: 418 VRSYTIMIWKFC-----------------------------KQNAAVYTCLITGFGNRRR 448
              Y I I   C                             K N + +   + G G   +
Sbjct: 384 YLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAG---K 440

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
            D  + ++ EM  +G  PD  TY+ +I  +      ++A  +++EM R+G  P+++TY +
Sbjct: 441 FDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTI 500

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++ S+ + G  +  RK +DEM+ +GC P+  +YT LI   +   +   A +  E ML +G
Sbjct: 501 LIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEG 560

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
            K  V+ Y        +AG+     ++  +MR  G  E S++
Sbjct: 561 CKPNVVTYTALIDGHCKAGQIEKACQIYARMR--GDIESSDM 600



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 176/475 (37%), Gaps = 96/475 (20%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
            L+ +LVV+V+   ++      +FF WAG + G++H  + ++ ++ +LG     +  V +
Sbjct: 103 QLNDSLVVEVMNNVKNPEL-CVKFFLWAGRQIGYSHTPQVFDKLLDLLGCNVNADDRVPL 161

Query: 268 ----------------------------------LEEMGEKGLL----SMETFKIAMNAF 289
                                             LEE+G         S  T+   +  F
Sbjct: 162 KFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVF 221

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
             A +   A  +   M  Y F     T++C   +L +    +EA  L D+ +  F P+  
Sbjct: 222 LRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAED-FVPDTV 280

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            Y  ++ G C      EA  + + M      P+VV + I+L G L+ G+     ++  +M
Sbjct: 281 FYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMM 340

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
             +G  PN   +  +I  +CK     Y                Y L K+M + GC P  L
Sbjct: 341 ITEGCYPNREIFNSLIHAYCKSRDYSYA---------------YKLFKKMIKCGCQPGYL 385

Query: 470 TYNALI-KLMKIQKMP----------------------------------------DEAV 488
            YN  I  +   ++ P                                        D+A 
Sbjct: 386 VYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAF 445

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +I  EM+  GF P   TY+ ++         E    +++EM R G  P   +YT+LI   
Sbjct: 446 KIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSF 505

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                  +A K+ +EML KG    V+ Y        +A +  V DEL + M   G
Sbjct: 506 CKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEG 560



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 136/291 (46%), Gaps = 25/291 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++  L +A + +    +L+ M   G    +  +   ++ F    + + A  +F
Sbjct: 615 NVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVF 674

Query: 303 ELMNKYKFKAGVDT----INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             M++  +   + T    I+CL ++   ++L    ++L   L++  TPN+  YT ++ G 
Sbjct: 675 TKMSERGYSPNLYTYSSFIDCLFKD---NRLDLVLKVLSKMLENSCTPNVVIYTEMVDGL 731

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C++    EA ++  +M +KG  P+VV +  M++G  K GK    ++LF  M +KG +PN 
Sbjct: 732 CKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNF 791

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y ++I   C                   +D  Y LL EM++   P   L++  +I+  
Sbjct: 792 ITYRVLINHCCSNGL---------------LDEAYKLLDEMKQTYWPKHILSHRKIIEGF 836

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
             + +   ++ +  E+  +   P    Y +++ +Y + G  E+   + +E+
Sbjct: 837 SQEFIT--SIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEI 885


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 169/361 (46%), Gaps = 23/361 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMET----FKIAMNAFAAAKERKKAVAIFE 303
           ++ ++S L R + + T++S+ + +    LL +E     F I +N F+  +    A ++  
Sbjct: 87  FDKLLSALVRIKHYGTVLSLSKRIE---LLRIERDVFHFNILINCFSRLQRVDFAFSVLG 143

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVK 362
            + K  F+    T + L+  L        A   FD++    + PNL TY  ++ G+C++ 
Sbjct: 144 KIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIG 203

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
               A  +  +M   G +PD+V +N +++GL K    S+A+ +F  +K KG  P+V +Y+
Sbjct: 204 KTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYS 263

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           I++   C               N  + +    L  EM      PD +T+N L+  +  + 
Sbjct: 264 ILMHGLC---------------NSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEG 308

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M  EA  I K M+  G +P   TYN +M  Y         R V+D MI +GC P+  SY 
Sbjct: 309 MLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYN 368

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           +LI G     R  EA +  +EM  +G+     +YN   + L +AGR     EL + M+  
Sbjct: 369 ILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQ 428

Query: 603 G 603
           G
Sbjct: 429 G 429



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 173/356 (48%), Gaps = 19/356 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K GF  ++ T++S+++ L    +F   +   +EM   G   ++ T+   +  F    +  
Sbjct: 147 KLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTT 206

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            AV + + M+K   +  +   N +++ L + +L  EA  +F ++K +   P++ TY++L+
Sbjct: 207 VAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILM 266

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      EA  ++NEM+     PDVV  NI+++ L K G  S+A  + ++M  KG  
Sbjct: 267 HGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVE 326

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  +Y  ++  +C QN          F  R    +V+D    M  +GC P+ ++YN LI
Sbjct: 327 PNYATYNSLMNGYCLQNKV--------FEAR----MVFD---AMITKGCMPNVVSYNILI 371

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
               K Q++ DEA  ++ EM   G  P    YN ++    Q G +   R+++ +M  +GC
Sbjct: 372 NGYCKAQRI-DEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGC 430

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
            PD  + T+L+  L        A +    M +  +K  ++ Y+     + ++G+ Y
Sbjct: 431 SPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKIY 486


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 176/387 (45%), Gaps = 23/387 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+N ++  L RA Q    + ++EEM + GLL  E TF   M  F        A
Sbjct: 190 GIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGA 249

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLG 356
           + + E M +        T+N L+    +    +EA    +++  R  F P+  T+ +L+ 
Sbjct: 250 MRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVN 309

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G  +  ++  A  V + M+ +GF PD+  +N ++ GL K+G+  +A+K+   M  +  SP
Sbjct: 310 GLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSP 369

Query: 417 NVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLL 456
           N  +Y  +I   CK+N                       Y  LI G    R   +  +L 
Sbjct: 370 NTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELY 429

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           KEM+ +GC PD  TYN LI  +  +    EA+ + KEM  SG    + TYN ++  + + 
Sbjct: 430 KEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKN 489

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                  +++D+M  +G   +  +Y  LI GL   +R  EA + +++M+ +G++     Y
Sbjct: 490 KRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTY 549

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           N       +AG      ++ Q M   G
Sbjct: 550 NSLLTYFCKAGDIKKAADIVQTMASDG 576



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 21/330 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           TF + +N  +     K A+ + ++M +  F   + T N L+  L +     EA  + +++
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R  +PN  TY  ++   C+   + EA ++   +  KG  PDV  +N +++GL      
Sbjct: 363 IERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCL 439
           + A++L++ MK KG  P+  +Y ++I   C                     +N   Y  L
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I GF   +R+    ++  +ME +G   + +TYN LI  +   +  +EA ++  +M+  G 
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P   TYN ++  + + G+ +    +   M   GC PD  +Y  LI GL    R   A K
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            L  +  KG+      YN     L R  RS
Sbjct: 603 LLRTIQMKGINLTPHAYNPVIQALFRRKRS 632



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/450 (21%), Positives = 184/450 (40%), Gaps = 89/450 (19%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAM 286
               F WA  +P F  +S  +  ++  LG+A +F+ M  +L+EM     ++  ++  + +
Sbjct: 72  VIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFI 131

Query: 287 NAFAAAKERKKAVAIFELM-----------------------NKYKF------------- 310
            ++A+     + +   + M                       NK K              
Sbjct: 132 ESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGI 191

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  V T N L++ L R+   + A LL ++++     P+  T+T ++ G+    NL  A R
Sbjct: 192 RPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR 251

Query: 370 VWNEMID------------------------------------KGFKPDVVAHNIMLEGL 393
           V  +M++                                    +GF PD    N+++ GL
Sbjct: 252 VKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGL 311

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
            K G    A+++ ++M  +G  P++ +Y  +I   CK                  +D   
Sbjct: 312 SKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLG---------------EVDEAV 356

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            +L +M ER C P+ +TYN +I  +  +   +EA ++   +   G  P + TYN +++  
Sbjct: 357 KVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGL 416

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
             + N+ +  +++ EM  +GC PD+ +Y +LI  L  + +  EA   L+EM   G    V
Sbjct: 417 CLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNV 476

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + YN       +  R    +E+  +M   G
Sbjct: 477 ITYNTLIDGFCKNKRIAEAEEIFDQMELQG 506



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 157/328 (47%), Gaps = 18/328 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TYN+++S L +  Q E    +   +  KG+L  + T+   +     ++    A+ ++
Sbjct: 370 NTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELY 429

Query: 303 ELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M          T N L+++L  R KL +   LL +        N+ TY  L+ G+C+ 
Sbjct: 430 KEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKN 489

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K + EA  ++++M  +G   + V +N +++GL K  +  +A +L + M  +G  P+  +Y
Sbjct: 490 KRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTY 549

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             ++  FCK             G+ ++     D+++ M   GC PD +TY  LI  +   
Sbjct: 550 NSLLTYFCKA------------GDIKK---AADIVQTMASDGCEPDIVTYGTLIAGLCKA 594

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              + A ++ + +   G   T H YN ++++ F+    +   +++ EMI +   PD  +Y
Sbjct: 595 GRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTY 654

Query: 542 TVLIGGLISQDRS-GEAYKYLEEMLEKG 568
            ++  GL       GEA  ++ EMLE+G
Sbjct: 655 KIVFRGLCQGGGPIGEAVDFVMEMLERG 682


>gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa]
 gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 209/457 (45%), Gaps = 30/457 (6%)

Query: 171 SYKSTAD-PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
           SY  T + P  I+ +C++I    S   N+E+VLD   I +    V  VL+    +   A 
Sbjct: 41  SYLETPNLPPTIKLLCEIIANTPS--HNVESVLDATVIRVKQTDVEQVLKLSYSSPGSAV 98

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           +FF WAG +    H+  ++N ++ +LG+   F+ M   ++ M  + L+S+ TF    +++
Sbjct: 99  KFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASVFSSY 158

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
                 K+A+  FE+M++Y     V  +N LL  + R     +A       K+R  P+  
Sbjct: 159 VIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRILPDAD 218

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP-DVVAHNIMLEGLLK--IGKRSDAIKL 405
           +Y +LL GW +  N+  A   + +M+   G+ P +V A++  L  LL    G R +A+K 
Sbjct: 219 SYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMGYDGLR-EAMKH 277

Query: 406 FEVMKAKGPSPNVRSY---------------TIMIWKFC------KQNAAVYTCLITGFG 444
           F+ MK +G  P V+ +                ++IW+        + +  +Y  +I    
Sbjct: 278 FDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMIGIHC 337

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              + DI    L EM   G  PD  TYN L + +   K   EA  +  EM+++ F P   
Sbjct: 338 YDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFFPNKT 397

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             N  +K+Y  +    M  KVW  M+   G    + +  +L+  L       EA KY E 
Sbjct: 398 NCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAVKYAEV 457

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           M+EKG+K      +K    L+   +  + +EL +K +
Sbjct: 458 MIEKGIKLTSSSLSKLKQMLNEEKKPILYEELLRKWK 494


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 213/505 (42%), Gaps = 100/505 (19%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDK 238
           + ++  ++D   S++ N++    +  I LS N V  VL+      +P  A+ FFCW+  +
Sbjct: 86  VSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQ 145

Query: 239 PGFAHNSRTYNSMMSILGRA-------------RQFETMV------SMLEEMGEKGLL-- 277
             + HN   Y S++ +L  A             R+FE  +      S+++  G+ G++  
Sbjct: 146 KKYTHNLECYVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEE 205

Query: 278 ---------------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
                          ++ T+   MN   +A     A  +FE+M   + K  V T N +++
Sbjct: 206 LLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIK 265

Query: 323 NLGRSKLPKEA----------QLLFDKLKHR-----------FTPNLTTY---------- 351
              ++   ++A           L  DK+ +            F+  +  Y          
Sbjct: 266 GYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQV 325

Query: 352 -----TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                ++++GG C+   L E   V+  MI KG KP+V  + ++++G  K G   DAI+L 
Sbjct: 326 PPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLL 385

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M  +G +P+V +Y++++   CK                     N+  Y+ LI G G  
Sbjct: 386 HRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKA 445

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHT 505
            R+D    L +EM E+GC  D   YNALI         DEA+ ++K M    G   T++T
Sbjct: 446 GRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYT 505

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y +++   F+    E   K+WD MI +G  P       L  GL    +   A K L+E+ 
Sbjct: 506 YTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELA 565

Query: 566 EKGMKAPVLDY--NKFAADLSRAGR 588
             G+   +LD         L +AGR
Sbjct: 566 PMGV---ILDAACEDMINTLCKAGR 587



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 158/349 (45%), Gaps = 24/349 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+M+    +A Q +  +  L  M  KGL + + T+   + A  A  +    VA+++ M
Sbjct: 259 TYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEM 318

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNL 364
           ++   +      + ++  L +     E   +F+ +  + + PN+  YTVL+ G+ +  ++
Sbjct: 319 DEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSV 378

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R+ + MID+GF PDVV +++++ GL K G+  +A+  F+  +  G + N   Y+ +
Sbjct: 379 EDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSL 438

Query: 425 I--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-G 463
           I                     K C +++  Y  LI  F    ++D    L K MEE  G
Sbjct: 439 IDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEG 498

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C     TY  LI  M  +   +EA++++  M+  G  PT      +      +G      
Sbjct: 499 CDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARAC 558

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           K+ DE+   G    D +   +I  L    R  EA K  + + E+G + P
Sbjct: 559 KILDELAPMGVIL-DAACEDMINTLCKAGRIKEACKLADGITERGREVP 606


>gi|223950475|gb|ACN29321.1| unknown [Zea mays]
 gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 468

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 197/432 (45%), Gaps = 31/432 (7%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           +EA L  CGI  +  +   VL+     +RP  A RFF WAG     +H +  +N ++ IL
Sbjct: 37  VEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQS--VSHTAYAWNLLVDIL 94

Query: 256 GRARQFETMVSMLEEM---GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
           G+A  FE M   +  M   G  GL+S+ TF     ++ AA   K A+A  ++M++Y  K 
Sbjct: 95  GKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDVMDRYGLKH 154

Query: 313 GVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
               +N LL  + R +   ++AQ +F++ K    P+  T+ +LL  W +  N + A  V+
Sbjct: 155 DAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGNAVRAKSVF 214

Query: 372 NEMIDK-GF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT------- 422
            EM+ + G+   +V A++  L  L++ G   +A K  +VM++KG  P +  ++       
Sbjct: 215 GEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFFSTAVDLVV 274

Query: 423 --------IMIWKFCKQNA------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
                   + IW      A      ++Y+ +I    N   +D    LL EM   G   + 
Sbjct: 275 RKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDEMPLNGVFANS 334

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN +++     +   EA     EM ++   PT       +  +F+  N      VW  
Sbjct: 335 VTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNPSAAIDVWRC 394

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++     P ++S   LI GL+   R  E  K  +EM++  ++             ++AGR
Sbjct: 395 IVEHNITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTMENMKRGFAKAGR 454

Query: 589 SYVLDELAQKMR 600
               D +A++++
Sbjct: 455 HQSYDNIARRLK 466


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 203/446 (45%), Gaps = 25/446 (5%)

Query: 162 NSESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLER 220
            SE  I +   + T   R + ER  +++ ++F    + E  L+   + + H LV +++ +
Sbjct: 41  QSEEAIATTVPRYTHSVRVLDERFIRIL-KIFKWGPDAEKALEVLMLRVDHWLVREIM-K 98

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
                    +FF WA  +  + H++ TY +++  L    Q+  M  M++EM    +  + 
Sbjct: 99  TDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVT 158

Query: 281 TFKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
             +++  +     AK   KA+AIF  +   K +      N ++  L      ++   L++
Sbjct: 159 PTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYN 218

Query: 339 KLK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           ++    H F P+  TY+ L+  +C++     A ++ NEM D G +P    + +++    K
Sbjct: 219 EMSTEGHCF-PDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFK 277

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           +     A+ LFE M+                ++C+ +   YT LI G G   R+D  Y  
Sbjct: 278 LNDVHGALSLFEEMRH---------------QYCRPDVFTYTELIRGLGKAGRIDEAYHF 322

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM+  GC PD +  N +I  +      D+A+++++EM      P++ TYN I+K+ F+
Sbjct: 323 FYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFE 382

Query: 516 TGNYEMGRKVWDE-MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + +       W E M   G  P   +Y++LI G    +R  +A   LEEM EKG      
Sbjct: 383 SKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPA 442

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMR 600
            Y      L +A R  +  EL Q+++
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELK 468



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 24/358 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAI 301
            ++ YNSM+ +L    Q+E +  +  EM  +G       T+   ++AF     R  A+ +
Sbjct: 193 TAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQL 252

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
              M     +        L+    +      A  LF++++H++  P++ TYT L+ G  +
Sbjct: 253 LNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 312

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              + EA   + EM  +G +PD +  N M+  L K G+  DA+KLF+ M      P+V +
Sbjct: 313 AGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVT 372

Query: 421 YTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           Y  +I    +                      ++  Y+ LI GF    RM+    LL+EM
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 432

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +E+G PP    Y +LI  +   K  D A  +++E+  +    +   Y +++K   + G  
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRL 492

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +    ++DEM + GC PD  +Y  L+ GL       EA   +  M E G    +  YN
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYN 550



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRL 492

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             A+ +F+ MNK      V   N L+  L R+ +  EA     +++ H   P++ +Y ++
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 552

Query: 355 LGGWCRVKNLMEAGRVW 371
           L G  + ++L+   R +
Sbjct: 553 LNGLQKQEDLIVQWRCF 569


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 180/345 (52%), Gaps = 20/345 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           AF  +C    K   + +  TY+S++S      + +  V +   M    +  ++ TF I +
Sbjct: 217 AFDLYCEMVSKR-ISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILI 275

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           + F    + ++A  +  +M K   K  V T N L++     K   +A+ LF+ +  R  T
Sbjct: 276 DGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVT 335

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ +Y++++ G+C++K + EA +++ EM  K   P+VV +N +++GL K G+ S A++L
Sbjct: 336 PDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALEL 395

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M  +G   N+ +Y  ++   CK N                +D    LL +++E+G  
Sbjct: 396 VDEMHDRGQPSNIITYNSILDAICKNN---------------HVDKAIVLLTKIKEKGIQ 440

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PD  TY  LI  L K+ ++ D+A +++++++  G+ P I+TY  ++  +   G ++ G  
Sbjct: 441 PDIFTYTVLINGLCKVGRL-DDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLA 499

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  +M   GC P+  +Y +LI  L  +D + +A K L EM+ +G+
Sbjct: 500 MLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 21/344 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-L 340
           F   + +   AK+ + A+++ + M     K    T N L+    +    K +  +F K L
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKIL 120

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           K  + P+  T+T+L+ G C    + +A    ++++ +GF+ D V++  ++ GL ++G+  
Sbjct: 121 KKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETK 180

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLI 440
            A++L   +  K   PNV  Y+ +I   CK                     +   Y+ LI
Sbjct: 181 AAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLI 240

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +GF    ++    DL   M      P+  T++ LI     +    EA  +   M++   K
Sbjct: 241 SGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVK 300

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
             + TYN +M  Y         + +++ M +RG  PD  SY+++I G        EA K 
Sbjct: 301 LDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKL 360

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            EEM  K +   V+ YN     L ++GR+    EL  +M   G+
Sbjct: 361 FEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQ 404



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 22/264 (8%)

Query: 336 LFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           LF++L H+    P    +  +LG   + K    A  +  +M   G KPD +  N+++   
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNA 433
            ++G    +  +F  +  KG  P+  ++TI+I   C                    + + 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  LI G            LL+ ++ +   P+ + Y+ +I  M   K+ ++A  +Y E
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV     P + TY+ ++  +   G  +    +++ MI     P+  ++++LI G   + +
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYN 577
             EA   L  M++K +K  V+ YN
Sbjct: 284 VREAKNVLAVMMKKNVKLDVVTYN 307



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  + +  ++  +   K    A+ + ++M  +G KP   T N++M  + Q G+ +    V
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +++++G  PD  ++T+LI GL  +    +A  + ++++ +G +   + Y      L R
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 586 AGRSYVLDELAQKMRFSGKFEVSNVL 611
            G +    +L +  R  GK    NV+
Sbjct: 176 VGETKAAVQLLR--RVDGKLVRPNVV 199


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 181/409 (44%), Gaps = 42/409 (10%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK----AV 299
           N  TYN MMS L +  + +   S+L+ M  +G++      ++ N       RK     A 
Sbjct: 468 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPN---VVSYNDMILGHCRKGNMDMAS 524

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGW 358
           ++F  M     K  V T + L++   +    ++A  LFD+ L     P   T+  ++ G 
Sbjct: 525 SVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGL 584

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+V  + EA       +++GF P  + +N +++G +K G    A+ ++  M   G SPNV
Sbjct: 585 CKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNV 644

Query: 419 RSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT +I  FCK N                       Y+ LI GF  RR M+   DL  E
Sbjct: 645 VTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFE 704

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           + E G  P+ + YN++I   +     + A+  YK+M+       + TY  ++    + G 
Sbjct: 705 LLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGR 764

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                 ++ EM+ +G  PD  ++ VL+ GL ++ +   A K LEEM  K M   VL YN 
Sbjct: 765 LVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNT 824

Query: 579 FAADLSRAG--------------RSYVLDELAQKMRFSGKFEVSNVLAR 613
             A   R G              R  V D++   +  +GKF+    L+R
Sbjct: 825 LIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSR 873



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 22/324 (6%)

Query: 260 QFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
             ++ +++  ++ E GL   + T+ + +     +   +KA  ++  M        V  +N
Sbjct: 380 NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 439

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
            LL    ++ L +EA  LFD+       N+ TY +++   C+   + EA  + + M+++G
Sbjct: 440 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 499

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
             P+VV++N M+ G  + G    A  +F  M A+   PNV +Y+I+I             
Sbjct: 500 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILID------------ 547

Query: 439 LITGFGNRRRMDI--VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMV 495
                GN ++ D     DL  +M      P   T+N +I  L K+ +M  EA    K  +
Sbjct: 548 -----GNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM-SEARDKLKNFL 601

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             GF P+  TYN I+  + + GN +    V+ EM   G  P+  +YT LI G    +R  
Sbjct: 602 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 661

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKF 579
            A K  +EM EKG++  V  Y+  
Sbjct: 662 LALKTRDEMREKGLELDVTAYSAL 685



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 19/260 (7%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL   T L+ G+C   NL  A  ++N++ + G  P+ V +++++EG    G    A +L+
Sbjct: 364 NLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELY 423

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK-------------------QNAAVYTCLITGFGNRR 447
             MK  G  P+V +   ++  + K                    N   Y  +++      
Sbjct: 424 TQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGG 483

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +MD    LL  M  +G  P+ ++YN +I     +   D A  ++ +M+    KP + TY+
Sbjct: 484 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYS 543

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++   F+ G+ E    ++D+M+     P D ++  +I GL    +  EA   L+  LE+
Sbjct: 544 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 603

Query: 568 GMKAPVLDYNKFAADLSRAG 587
           G     + YN       + G
Sbjct: 604 GFIPSCMTYNSIVDGFIKEG 623



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 19/279 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYNS++    +    ++ +++  EM E G+  ++ T+   +N F  +     A
Sbjct: 604 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 663

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
           +   + M +   +  V   + L++   + +  + AQ L F+ L+   +PN   Y  ++ G
Sbjct: 664 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 723

Query: 358 WCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           + R  N MEA  VW  +MI+     D+  +  +++GLLK G+   A  L+  M +KG  P
Sbjct: 724 F-RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVP 782

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ ++ +               L+ G  N+ +++    +L+EM+ +   P  L YN LI 
Sbjct: 783 DIITFHV---------------LVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIA 827

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
               +    EA  ++ EM+  G  P   TY++++   F+
Sbjct: 828 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFK 866



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 155/376 (41%), Gaps = 37/376 (9%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           LS N V+D L    +  + A R+F  A  + GF      Y  ++ IL R+ +       L
Sbjct: 98  LSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKL 157

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE-LMN---KYKFKAGVDTINCLLENL 324
                            +N + +       V   + L+N   ++ F+      N LL   
Sbjct: 158 -----------------LNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAY 200

Query: 325 GRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R+   + A   F+ +      P +    +LL    R   + E   ++N+M+ +G   D 
Sbjct: 201 IRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDH 260

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
              ++M+   LK G+  +A + F   K +G   +  +Y+I+I   CK+  +         
Sbjct: 261 FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS--------- 311

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
                 ++  +LL+EM+ERG  P   T+ ++I     Q    EA+R+ +EM+  G    +
Sbjct: 312 ------NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNL 365

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
                +MK Y   GN +    +++++   G  P+  +Y+VLI G  +     +A +   +
Sbjct: 366 VVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQ 425

Query: 564 MLEKGMKAPVLDYNKF 579
           M   G+   V + N  
Sbjct: 426 MKLNGIPPSVFNVNSL 441



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 28/282 (9%)

Query: 199 EAVLDECGINLSHNLVVD--VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           E  +  C   +++N +VD  + E    +    +R  C  G  P    N  TY S+++   
Sbjct: 603 EGFIPSC---MTYNSIVDGFIKEGNIDSALAVYREMCEFGVSP----NVVTYTSLINGFC 655

Query: 257 RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           ++ + +  +   +EM EKGL L +  +   ++ F   ++ + A  +F  + +        
Sbjct: 656 KSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRI 715

Query: 316 TINCLLENLGRSKLPKEAQLLFDK--LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
             N ++    R     EA L++ K  +  R   +L TYT L+ G  +   L+ A  ++ E
Sbjct: 716 VYNSMISGF-RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYME 774

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M+ KG  PD++  ++++ GL   G+  +A K+ E M  K  +P+V               
Sbjct: 775 MLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSV--------------- 819

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +Y  LI G+     +   + L  EM +RG  PD +TY+ LI
Sbjct: 820 LIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 861


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 173/378 (45%), Gaps = 22/378 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           T+N ++  L +A Q    + MLE+M   GL   E TF   M  F    + + A+ I ELM
Sbjct: 201 TFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELM 260

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
            +   +    ++N L+  L +    +EA L F   +  F P+  T+  L+ G CR  ++ 
Sbjct: 261 VESGCELTSVSVNVLVNGLCKEGRIEEA-LRFIYEEEGFCPDQVTFNALVNGLCRTGHIK 319

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +   + + M++KGF+ DV  +N ++ GL K+G+  +A+++   M ++   PN  +Y  +I
Sbjct: 320 QGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLI 379

Query: 426 WKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK+N                       +  LI G       +I  +L +EM+E+GC 
Sbjct: 380 GTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCD 439

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  TY+ LI+ +  ++   EA+ + KEM  SG    +  YN ++    +         +
Sbjct: 440 PDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDI 499

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +D+M   G      +Y  LI GL    R  EA + +++M+ +G+K     Y        +
Sbjct: 500 FDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQ 559

Query: 586 AGRSYVLDELAQKMRFSG 603
            G      ++ Q M  +G
Sbjct: 560 QGDIKRAADIVQNMTLNG 577



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 143/330 (43%), Gaps = 21/330 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDK 339
           TF   +N        K+ + + + M +  F+  V T N L+  L +  ++ +  ++L   
Sbjct: 304 TFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHM 363

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +     PN  TY  L+G  C+  ++  A  +   +  KG  PDV   N +++GL     R
Sbjct: 364 VSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNR 423

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A++LFE MK KG  P+  +Y+I+I   C +                    N  VY  L
Sbjct: 424 EIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTL 483

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+    D+  +ME  G     +TYN LI  +   K  +EA ++  +M+  G 
Sbjct: 484 IDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGL 543

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++K + Q G+ +    +   M   GC PD  +Y  LIGGL    R   A K
Sbjct: 544 KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASK 603

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            L  +  KGM      YN     L +  R+
Sbjct: 604 LLRSVQMKGMVLTPQAYNPVIQALCKRKRT 633



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/453 (22%), Positives = 190/453 (41%), Gaps = 58/453 (12%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           + S + ++D+L R +     A   F WA  +P ++ +   ++ ++  L RA  F++M+++
Sbjct: 56  DFSPSQLLDLLRR-QPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTL 114

Query: 268 LEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT--INCLLENL 324
           L +M   K  +   TF I +  +A +      +    L+ +  F    DT   N  L  L
Sbjct: 115 LRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLL 174

Query: 325 GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            ++   K  + L  K+      P+++T+ +L+   C+   L  A  +  +M + G +PD 
Sbjct: 175 VKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDE 234

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
                +++G ++      A+++ E+M   G      S  +++   CK+            
Sbjct: 235 KTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE 294

Query: 432 -----------NAAV------------------------------YTCLITGFGNRRRMD 450
                      NA V                              Y  LI+G      +D
Sbjct: 295 EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEID 354

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              ++L  M  R C P+ +TYN LI  +  +   + A  + + +   G  P + T+N ++
Sbjct: 355 EAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLI 414

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           +    T N E+  ++++EM  +GC PD+ +Y++LI  L S+ R  EA   L+EM   G  
Sbjct: 415 QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCA 474

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             V+ YN     L +  R    +++  +M   G
Sbjct: 475 RNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLG 507



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 161/382 (42%), Gaps = 25/382 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           A RF     ++ GF  +  T+N++++ L R    +  + M++ M EKG  L + T+   +
Sbjct: 288 ALRFI---YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLI 344

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           +      E  +AV I   M     +    T N L+  L +    + A  L   L  +   
Sbjct: 345 SGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVL 404

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ T+  L+ G C   N   A  ++ EM +KG  PD   ++I++E L    +  +A+ L
Sbjct: 405 PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALML 464

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGN 445
            + M+  G + NV  Y  +I   CK N                    +  Y  LI G   
Sbjct: 465 LKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCK 524

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            +R++    L+ +M   G  PD  TY  ++K    Q     A  I + M  +G +P I T
Sbjct: 525 SKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVT 584

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  ++    + G  ++  K+   +  +G      +Y  +I  L  + R+ EA +   EM+
Sbjct: 585 YGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMM 644

Query: 566 EKGMKAPVLDYNKFAADLSRAG 587
           EKG    V+ Y      L   G
Sbjct: 645 EKGDPPDVITYKIVFRGLCNGG 666



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 179/396 (45%), Gaps = 29/396 (7%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGIN-LSHNLVVDVLERFRH--ARRPAFRFFCWA 235
           I  +CK+  IDE   +  +M  V  +C  N +++N ++  L +  H  A     R     
Sbjct: 344 ISGLCKLGEIDEAVEILHHM--VSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSK 401

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKE 294
           G  P       T+NS++  L      E  + + EEM EKG    E T+ I + +  + + 
Sbjct: 402 GVLPDVC----TFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERR 457

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
            K+A+ + + M        V   N L++ L ++    +A+ +FD+++    + +  TY  
Sbjct: 458 LKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNT 517

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G C+ K + EA ++ ++MI +G KPD   +  ML+   + G    A  + + M   G
Sbjct: 518 LINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG 577

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P++ +Y  +I   CK                 R+D+   LL+ ++ +G       YN 
Sbjct: 578 CEPDIVTYGTLIGGLCKAG---------------RVDVASKLLRSVQMKGMVLTPQAYNP 622

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN-YEMGRKVWDEMIRR 532
           +I+ +  +K   EA+R+++EM+  G  P + TY ++ +     G   +       EM+ +
Sbjct: 623 VIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEK 682

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           G  P+  S+  L  GL S        + +  ++EKG
Sbjct: 683 GILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKG 718


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 171/352 (48%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF+ N   Y +++    +  + E    +  EMG+ GL++ E T+ + ++       +K+ 
Sbjct: 193 GFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             ++E M +      + T NC++    +    K+A  LFD+++ R  + N+ TY  L+GG
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGG 312

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR     EA +V ++M   G  P+++ +N +++G   +GK   A+ L   +K++G SP+
Sbjct: 313 LCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y I++  FCK+                    +   YT LI  F     M+    L  
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRS 432

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            MEE G  PD  TY+ LI    I+   +EA R++K MV    +P    YN ++  Y + G
Sbjct: 433 PMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEG 492

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +     +++ EM  +   P+  SY  +I  L  + +S EA   +E+M++ G+
Sbjct: 493 SSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGI 544



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 171/411 (41%), Gaps = 74/411 (18%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-------SMETFKIAMNAFAAAKERKK 297
           SR Y  M++   +++  ++ +S   EM +KG +       ++ TF +  ++F        
Sbjct: 94  SRLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQW----- 148

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLG---RSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
               +   N+ K K  +D  +  +   G     ++ K   LL +  +  F+PN+  YT L
Sbjct: 149 ----WRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTL 204

Query: 355 LGGWCRVKNLMEA----------GRVWNE-------------------------MIDKGF 379
           + G C+   + +A          G V NE                         M + G 
Sbjct: 205 IDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGV 264

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
            P++  +N ++    K G+  DA KLF+ M+ +G S N+ +Y  +I   C++        
Sbjct: 265 FPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI GF    ++     L ++++ RG  P  +TYN L+    
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFC 384

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
            +     A ++ KEM   G KP+  TY +++ ++ +  N E   ++   M   G  PD +
Sbjct: 385 KKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVH 444

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           +Y+VLI G   + +  EA +  + M+ K ++   + YN       + G SY
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSY 495



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 137/295 (46%), Gaps = 22/295 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN +M+   +  + +    + +EM E+G+  ++ T+   +       +  +A
Sbjct: 263 GVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEA 322

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M        + T N L++   G  KL K   L  D      +P+L TY +L+ G
Sbjct: 323 NKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSG 382

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  +   AG+V  EM ++G KP  + + I+++   ++     AI+L   M+  G +P+
Sbjct: 383 FCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPD 442

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y+++I  FC                    + N  +Y  ++ G+           L +
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFR 502

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           EMEE+  PP+  +Y  +I+++  ++   EA  + ++M+ +G  P+    N+I ++
Sbjct: 503 EMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRA 557



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 51/253 (20%)

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y V++  + + ++L  +   +NEM+DKGF P     N +L  ++     +   + F   K
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
            K    +V S+ I+I   C+                  ++  +DLL E+ E G       
Sbjct: 157 IK-VDLDVYSFGIVIKGCCEAG---------------EIEKSFDLLVELREFG------- 193

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
                                       F P +  Y  ++    + G  E  + ++ EM 
Sbjct: 194 ----------------------------FSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMG 225

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           + G   ++ +YTVLI GL       + ++  E+M E G+   +  YN       + GR+ 
Sbjct: 226 KFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTK 285

Query: 591 VLDELAQKMRFSG 603
              +L  +MR  G
Sbjct: 286 DAFKLFDEMRERG 298


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 21/349 (6%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+ R+   ++ +LE  G   +  + T+ + +  +  + E  KA+ + E M+       V 
Sbjct: 156 GKTRKATRIMEILENSG--AVPDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVV 210

Query: 316 TINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N +L +L  S   KEA  + D+ ++    P++ TYT+L+   C    + +A ++ +EM
Sbjct: 211 TYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 270

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
             KG KPDVV +N+++ G+ K G+  +AIK    M   G  PNV ++ I++   C     
Sbjct: 271 RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS---- 326

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                 TG    R MD    LL +M  +GC P  +T+N LI  +  +++   A+ + ++M
Sbjct: 327 ------TG----RWMD-AERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKM 375

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            + G  P   +YN ++  + Q    +   +  + M+ RGC PD  +Y  L+  L    ++
Sbjct: 376 PKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKA 435

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             A + L ++  KG    ++ YN     L++ G++    EL ++MR  G
Sbjct: 436 DAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKG 484



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 182/402 (45%), Gaps = 36/402 (8%)

Query: 229 FRFFCWAG------------DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
            R FC +G            +  G   +  TYN ++    ++ + +  + +LE M     
Sbjct: 149 IRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAP- 207

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
             + T+   + +   + + K+A+ + +   + +    V T   L+E         +A  L
Sbjct: 208 -DVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKL 266

Query: 337 FDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
            D+++ +   P++ TY VL+ G C+   L EA +  N M   G +P+V+ HNI+L  +  
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS 326

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAV 435
            G+  DA +L   M  KG SP+V ++ I+I   C++                    N+  
Sbjct: 327 TGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLS 386

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  L+ GF   ++MD   + L+ M  RGC PD +TYN L+  +      D AV I  ++ 
Sbjct: 387 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLS 446

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + TYN ++    + G  E   ++ +EM R+G  PD  +Y+ L+ GL  + +  
Sbjct: 447 SKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVD 506

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELA 596
           EA K   +M    +K   + YN     L +A + S  +D LA
Sbjct: 507 EAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 548



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 22/304 (7%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L+EM +KG    + T+ + +N         +A+     M  Y  +  V T N +L ++ 
Sbjct: 266 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMC 325

Query: 326 RSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +    +A+ LL D L+   +P++ T+ +L+   CR + L  A  V  +M   G  P+ +
Sbjct: 326 STGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSL 385

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAV------ 435
           ++N +L G  +  K   AI+  E+M ++G  P++ +Y  ++   CK    +AAV      
Sbjct: 386 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445

Query: 436 -----------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  +I G     + +   +LL+EM  +G  PD +TY+ L++ +  +   
Sbjct: 446 SSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKV 505

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           DEA++I+ +M     KP+  TYN IM    +             M+ +GC P   +YT+L
Sbjct: 506 DEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTIL 565

Query: 545 IGGL 548
           I G+
Sbjct: 566 IEGI 569



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 23/254 (9%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++   T L+ G+CR     +A R+   + + G  PDV+ +N+++ G  K G+   A+++
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQV 199

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
            E M     +P+V +Y  ++   C                      +   YT LI    N
Sbjct: 200 LERMSV---APDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCN 256

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +     LL EM ++GC PD +TYN LI  +  +   DEA++    M   G +P + T
Sbjct: 257 DSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVIT 316

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +N+I++S   TG +    ++  +M+R+GC P   ++ +LI  L  +   G A   LE+M 
Sbjct: 317 HNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP 376

Query: 566 EKGMKAPVLDYNKF 579
           + G     L YN  
Sbjct: 377 KHGCMPNSLSYNPL 390



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 158/359 (44%), Gaps = 24/359 (6%)

Query: 242 AHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           A +  TYN+++ S+    +  E M  +  +M  +    + T+ I + A        +A+ 
Sbjct: 206 APDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMK 265

Query: 301 IFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           + + M K   K  V T N L+  + +  +L +  + L +   +   PN+ T+ ++L   C
Sbjct: 266 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMC 325

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                M+A R+  +M+ KG  P VV  NI++  L +      AI + E M   G  PN  
Sbjct: 326 STGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSL 385

Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           SY  ++  FC++                    +   Y  L+T      + D   ++L ++
Sbjct: 386 SYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             +GC P  +TYN +I  L K+ K  + A  + +EM R G KP I TY+ +++     G 
Sbjct: 446 SSKGCSPVLITYNTVIDGLTKVGKT-EYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGK 504

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +   K++ +M      P   +Y  ++ GL    ++  A  +L  M+EKG K     Y 
Sbjct: 505 VDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYT 563



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 21/210 (10%)

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           A NI L  L++ G+  + +K  E M  +G  P+V + T +I  FC+             G
Sbjct: 109 ASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRS------------G 156

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             R+   + ++L   E  G  PD +TYN LI         D+A+++ + M      P + 
Sbjct: 157 KTRKATRIMEIL---ENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVV 210

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN I++S   +G  +   +V D  ++R C PD  +YT+LI    +    G+A K L+EM
Sbjct: 211 TYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 270

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            +KG K  V+ YN     + + GR   LDE
Sbjct: 271 RKKGCKPDVVTYNVLINGICKEGR---LDE 297



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 22/296 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TYN +++ + +  + +  +  L  M   G   ++ T  I + +  +     
Sbjct: 272 KKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWM 331

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
            A  +   M +      V T N L+  L R +L   A  + +K+ KH   PN  +Y  LL
Sbjct: 332 DAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLL 391

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+ K +  A      M+ +G  PD+V +N +L  L K GK   A+++   + +KG S
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCS 451

Query: 416 PNVRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           P + +Y  +I                     K  K +   Y+ L+ G G   ++D    +
Sbjct: 452 PVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKI 511

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             +ME     P  +TYNA++  +   +    A+     MV  G KPT  TY ++++
Sbjct: 512 FHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567


>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays]
 gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]
          Length = 467

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 197/432 (45%), Gaps = 31/432 (7%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           +EA L  CGI  +  +   VL+     +RP  A RFF WAG     +H +  +N ++ IL
Sbjct: 36  VEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQS--VSHTAYAWNLLVDIL 93

Query: 256 GRARQFETMVSMLEEM---GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
           G+A  FE M   +  M   G  GL+S+ TF     ++ AA   K A+A  ++M++Y  K 
Sbjct: 94  GKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDVMDRYGLKH 153

Query: 313 GVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
               +N LL  + R +   ++AQ +F++ K    P+  T+ +LL  W +  N + A  V+
Sbjct: 154 DAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGNAVRAKSVF 213

Query: 372 NEMIDK-GF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT------- 422
            EM+ + G+   +V A++  L  L++ G   +A K  +VM++KG  P +  ++       
Sbjct: 214 GEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFFSTAVDLVV 273

Query: 423 --------IMIWKFCKQNA------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
                   + IW      A      ++Y+ +I    N   +D    LL EM   G   + 
Sbjct: 274 RKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDEMPLNGVFANS 333

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN +++     +   EA     EM ++   PT       +  +F+  N      VW  
Sbjct: 334 VTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNPSAAIDVWRC 393

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++     P ++S   LI GL+   R  E  K  +EM++  ++             ++AGR
Sbjct: 394 IVEHNITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTMENMKRAFAKAGR 453

Query: 589 SYVLDELAQKMR 600
               D +A++++
Sbjct: 454 HQSYDNIARRLK 465


>gi|115475660|ref|NP_001061426.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|37806221|dbj|BAC99723.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|37806377|dbj|BAC99889.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623395|dbj|BAF23340.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|125602810|gb|EAZ42135.1| hypothetical protein OsJ_26694 [Oryza sativa Japonica Group]
          Length = 528

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 176/375 (46%), Gaps = 38/375 (10%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+AR+F+   +++  M  +G+L+     I M  +AAA E  KA+  F+ M K+K +A   
Sbjct: 154 GKARRFDLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQT 213

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLMEAGRVWNEM 374
               LL  L ++K  ++A+ L    K  F      + ++L GWC V  ++ EA R+W EM
Sbjct: 214 VFYSLLRALCKNKNIEDAEELLLVRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWREM 273

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--- 431
            +    PD  ++ +M+    K+G   D +++++ MK +G +P++  Y  +I+   K+   
Sbjct: 274 SNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCM 333

Query: 432 -----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            N   Y  +I      R++D    +L++M  +G  P  LTY+  
Sbjct: 334 KDVQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYHTF 393

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           ++    Q+  DE ++  K+M   G  P   T+ M++  +FQ        K+W+EM R   
Sbjct: 394 LR----QENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRYDI 449

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD--LSRAGRSYVL 592
            P  + Y  ++ GLI       A +Y +EM E G          FA+D  L +  R+++L
Sbjct: 450 RPSYSHYMSVVQGLIKHGCMQRALEYYDEMKENG----------FASDPKLEKEFRTFLL 499

Query: 593 DELAQKMRFSGKFEV 607
                  R +GK+ +
Sbjct: 500 AN-RDHWRGAGKYNI 513


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 191/442 (43%), Gaps = 54/442 (12%)

Query: 216 DVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           DVL+R +  R       FF    +   F H + TY  M+  LGR  + + +  +L++M  
Sbjct: 43  DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKM 102

Query: 274 KGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPK 331
            G+   E  F   +N +      ++A+ +F  + ++  K  V   N LL+  L  +K   
Sbjct: 103 DGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQM 162

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG------------- 378
              L  +  K    PN+ TY +LL   C+   +  A +++ EM +KG             
Sbjct: 163 INPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVS 222

Query: 379 -----------------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
                            FKP V  +N +++G+ K G+   AIKL   M   G  PNV SY
Sbjct: 223 SLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSY 282

Query: 422 TIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           + +I                     + C  N   +T LI G   R ++    DL K M +
Sbjct: 283 SCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQ 342

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            GC P+ + YN LI  +      +EA+++  +M RSG  P + TY++++  + ++G+   
Sbjct: 343 DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVG 402

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             + W+ MI  GC P+  +YT ++  L       +A   +E+M  +G     + +N F  
Sbjct: 403 ASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIK 462

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
            L   GR     +L ++M+  G
Sbjct: 463 GLCGNGRVEWAMKLLERMQGHG 484



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 173/393 (44%), Gaps = 26/393 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A + F    +K G   ++ TY +M+S L +A + +       E+  +   S+  +   ++
Sbjct: 198 AHKLFVEMSNK-GCPPDAVTYTTMVSSLCKAGKIDDA----RELAGRFKPSVPVYNALID 252

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
                   + A+ +   M        V + +C++ +L  S   + A  LF ++  R    
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDA 312

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ T+T L+ G      L EA  +W  MI  G +P+VVA+N ++ GL   G   +A+++ 
Sbjct: 313 NIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVC 372

Query: 407 EVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNR 446
           + M+  G  PNV +Y+I+I  F                    C+ N   YTC++      
Sbjct: 373 DQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
              D    L+++M   GC P+ +T+N  IK +      + A+++ + M   G  P I TY
Sbjct: 433 SMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTY 492

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N ++ + F+   YE    ++ E+  R   P+  +Y  ++ G       GEA +   + L 
Sbjct: 493 NELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALV 552

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +G     + YN       + G+  +  +L +++
Sbjct: 553 RGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 177/440 (40%), Gaps = 63/440 (14%)

Query: 206 GINLSHNLVVDVLERFRH--ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET 263
           GIN   +L + ++  ++   +   A + F   G+  G     R YN ++  L    +F+ 
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEF-GCKPTVRIYNHLLDALLSENKFQM 162

Query: 264 MVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
           +  +   M + GL+ ++ T+ I + A         A  +F  M+         T   ++ 
Sbjct: 163 INPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVS 222

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +L ++    +A+    +L  RF P++  Y  L+ G C+   +  A ++  EM+D G  P+
Sbjct: 223 SLCKAGKIDDAR----ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPN 278

Query: 383 VVAHNI-----------------------------------MLEGLLKIGKRSDAIKLFE 407
           VV+++                                    +++G    GK  +A+ L++
Sbjct: 279 VVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK 338

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRR 447
           +M   G  PNV +Y  +I   C                      N   Y+ LI GF    
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            +    +    M   GC P+ +TY  ++ ++    M D+A  + ++M   G  P   T+N
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFN 458

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
             +K     G  E   K+ + M   GC P+  +Y  L+  L   ++  EA+   +E+  +
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518

Query: 568 GMKAPVLDYNKFAADLSRAG 587
            ++  ++ YN      SRAG
Sbjct: 519 NLQPNLVTYNTVLYGFSRAG 538



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 159/387 (41%), Gaps = 58/387 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y+ +++ L  +   E   ++  +M  +G   ++ TF   +       +  +A
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +++LM +   +  V   N L+  L  +   +EA  + D+++     PN+TTY++L+ G
Sbjct: 334 LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDG 393

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  +L+ A   WN MI  G +P+VV +  M++ L K      A  L E M  +G +PN
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453

Query: 418 VRSYTIMI----------WKF----------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++   I          W            C  N   Y  L+       + +  + L +
Sbjct: 454 TITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+E R   P+ +TYN ++       M  EA++++ + +  G  P   TYN ++ +Y + G
Sbjct: 514 EIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQG 573

Query: 518 NYEMGRK---------------------VW---------------DEMIRRGCCPDDNSY 541
             ++  +                     +W               D+ I +G CP+  ++
Sbjct: 574 KVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATW 633

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKG 568
             L+               L+++L KG
Sbjct: 634 NALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|242054767|ref|XP_002456529.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
 gi|241928504|gb|EES01649.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
          Length = 517

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 179/389 (46%), Gaps = 24/389 (6%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           LD CG   S  LVV  L R R++   A   F WA  +PG+A   R  +SM++IL + R+F
Sbjct: 94  LDGCGAEASEPLVVAALSRLRNSCAAAHAAFRWAAAQPGYAPGRRACHSMLAILAKHRRF 153

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           +   ++L+EM    + S     + +    AA++   AVA F  +  + F  GV   + LL
Sbjct: 154 DAARALLDEMRRASMASPAAVLLLVRRHCAARDVAAAVAAFRALPSFGFDTGVAEFHGLL 213

Query: 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR-VKNLMEAGRVWNEMIDKGFK 380
             L R K  ++A+ L    +  F     ++ ++L GWC  V +L EA R W+ M  KG  
Sbjct: 214 SALCRYKNVQDAEHLLISCEKEFPFETKSFNIVLNGWCNIVCSLREAKRFWSSMERKGID 273

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
            DVV++  M+    K G     +KLF  M   G +P+ + Y  +++   K          
Sbjct: 274 RDVVSYGSMISCFSKAGSLHSVMKLFNHMNEAGVAPDRKVYNAIVFALAKGRCVKAAKML 333

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      + A +  LI      R++    ++   M ERG  P   T++A   L+ +
Sbjct: 334 VRTMEEKQVAPDTATFNSLIGPLCKARQVQEAMEMFDAMLERGLSPSVRTFHA---LLNV 390

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +   E   +  +M +   +P + TY M+++ + +   +E   K+W  M   G  PD ++
Sbjct: 391 ARNSTEVFDLLDKMKQLQCEPEMDTYIMLIRKFCRWRQHESVEKLWSAMPANGLSPDRSA 450

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           Y VLI GL    R  EA KY  EM  KG 
Sbjct: 451 YIVLIHGLFLNGRLEEAAKYYGEMKSKGF 479



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 6/193 (3%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKER 295
           ++ G A + + YN+++  L + R  +    ++  M EK +     TF   +     A++ 
Sbjct: 303 NEAGVAPDRKVYNAIVFALAKGRCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLCKARQV 362

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVL 354
           ++A+ +F+ M +      V T + LL N+ R+    E   L DK+K  +  P + TY +L
Sbjct: 363 QEAMEMFDAMLERGLSPSVRTFHALL-NVARNS--TEVFDLLDKMKQLQCEPEMDTYIML 419

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +CR +      ++W+ M   G  PD  A+ +++ GL   G+  +A K +  MK+KG 
Sbjct: 420 IRKFCRWRQHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAAKYYGEMKSKGF 479

Query: 415 SPNVRS-YTIMIW 426
           SP  ++   I  W
Sbjct: 480 SPEKKTEEMITAW 492



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/291 (19%), Positives = 114/291 (39%), Gaps = 18/291 (6%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  G    + +L  L + +    A+ L D+++     +     +L+   C  +++  A  
Sbjct: 133 YAPGRRACHSMLAILAKHRRFDAARALLDEMRRASMASPAAVLLLVRRHCAARDVAAAVA 192

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
            +  +   GF   V   + +L  L +     DA  L    + + P    +S+ I++  +C
Sbjct: 193 AFRALPSFGFDTGVAEFHGLLSALCRYKNVQDAEHLLISCEKEFPF-ETKSFNIVLNGWC 251

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                    ++      +R          ME +G   D ++Y ++I            ++
Sbjct: 252 N--------IVCSLREAKR------FWSSMERKGIDRDVVSYGSMISCFSKAGSLHSVMK 297

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++  M  +G  P    YN I+ +  +    +  + +   M  +   PD  ++  LIG L 
Sbjct: 298 LFNHMNEAGVAPDRKVYNAIVFALAKGRCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLC 357

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
              +  EA +  + MLE+G+   V     F A L+ A  S  + +L  KM+
Sbjct: 358 KARQVQEAMEMFDAMLERGLSPSV---RTFHALLNVARNSTEVFDLLDKMK 405


>gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa]
 gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 210/450 (46%), Gaps = 33/450 (7%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDE--CGINLSHNLVVDVLERFRHARR---PAFRFFCW 234
           E+ER+ ++I++    ++ +   L        L+   V +VL R   A      A  FF +
Sbjct: 39  EVERIARIINDHPFPNQPLHPTLTHHIPPTLLTTAFVENVLGRLFAAHSNGLKALEFFKY 98

Query: 235 A-GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAA 291
           +  ++  F+ +  ++   + IL R R F+    ++ E+G+    LL++++  I +   A 
Sbjct: 99  SLNNQTHFSPSPDSFEKTLHILARMRYFDKAWDLMVEIGKTHPFLLTLKSMSIMLCKIAK 158

Query: 292 AKERKKAVAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
            +  ++ +  FE M K  F   K GV+  N LL      +  KEA+ +F K+  RF PN+
Sbjct: 159 FRSYEETLDAFEKMEKRVFVGRKFGVEEFNVLLRAFCTVRKLKEAKSVFVKMHERFPPNV 218

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            T  +LL G+   +++      ++EM+ +GFKP   ++ I ++   K G  +DA+++FE 
Sbjct: 219 KTMNILLLGFKESRDVTAMELFYHEMVKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEE 278

Query: 409 MKAKGPSPNVRSYTIMIW--------------------KFCKQNAAVYTCLITGFGNRRR 448
           M+     P + + T +I                     +  + +   Y  LI+     R 
Sbjct: 279 MERANCLPTLETVTTLIHGAGVARNAMKARELFDEIPKRNLQADTGAYNALISSLVKCRE 338

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +     L+ EME+     D +TY+ + + LMK   + +    +Y +M+   F P   T  
Sbjct: 339 VKSAIQLMDEMEKNNIHYDDMTYHTMFLGLMKSGSI-EGVCELYHKMIDRNFVPKTRTVV 397

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           M+MK +      ++G  +W  ++ +G CP  ++  +L+ GL S+ RS EA+K  ++ LE+
Sbjct: 398 MLMKFFCVNSQIDLGLNLWGYLVGKGYCPHHHALDLLVTGLCSRGRSHEAFKCSKQSLER 457

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
           G+      Y      L ++  +  L EL Q
Sbjct: 458 GIHVSEAVYGMLERFLLQSNMTDKLGELNQ 487



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 23/318 (7%)

Query: 289 FAAAKERKKAVAIFE--LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRF 344
           FAA     KA+  F+  L N+  F    D+    L  L R +   +A  L  ++   H F
Sbjct: 83  FAAHSNGLKALEFFKYSLNNQTHFSPSPDSFEKTLHILARMRYFDKAWDLMVEIGKTHPF 142

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF---KPDVVAHNIMLEGLLKIGKRSD 401
              L + +++L    + ++  E    + +M  + F   K  V   N++L     + K  +
Sbjct: 143 LLTLKSMSIMLCKIAKFRSYEETLDAFEKMEKRVFVGRKFGVEEFNVLLRAFCTVRKLKE 202

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A  +F  M  + P PNV++  I               L+ GF   R +  +     EM +
Sbjct: 203 AKSVFVKMHERFP-PNVKTMNI---------------LLLGFKESRDVTAMELFYHEMVK 246

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           RG  P   +Y   I     +    +A+RI++EM R+   PT+ T   ++       N   
Sbjct: 247 RGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTLIHGAGVARNAMK 306

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            R+++DE+ +R    D  +Y  LI  L+       A + ++EM +  +    + Y+    
Sbjct: 307 ARELFDEIPKRNLQADTGAYNALISSLVKCREVKSAIQLMDEMEKNNIHYDDMTYHTMFL 366

Query: 582 DLSRAGRSYVLDELAQKM 599
            L ++G    + EL  KM
Sbjct: 367 GLMKSGSIEGVCELYHKM 384


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 150/294 (51%), Gaps = 21/294 (7%)

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+  L GR +      +L + L+ R  P++ TYT+LL   C+     +A ++ +EM
Sbjct: 34  TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 93

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------W 426
            DKG  PD+V +N+++ G+ + G+  DAI+  + + + G  PN  SY I++        W
Sbjct: 94  RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 153

Query: 427 ------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                       K C  N   +  LI+    +  ++   ++L+++ + GC P+ L+YN L
Sbjct: 154 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 213

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +     QK  D+A+     MV  G  P I +YN ++ +  ++G  ++  ++  ++  +GC
Sbjct: 214 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 273

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P   SY  +I GL    ++ EA + L EM+ KG++  ++ Y+  AA L R  R
Sbjct: 274 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 23/360 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            YN+M++    A Q +    ++ EM  +      T+   +           A+A+ + M 
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVEP--DAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           + +    V T   LLE   +    K+A  L D+++ +  TP++ TY V++ G C+   + 
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 119

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A      +   G +P+ V++NI+L+GL    +  DA +L   M  KG  PNV ++ ++I
Sbjct: 120 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 179

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C++                    N+  Y  L+  F  +++MD     L  M  RGC 
Sbjct: 180 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY 239

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++YN L+  +      D AV +  ++   G  P + +YN ++    + G  +   ++
Sbjct: 240 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 299

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            +EM+ +G  PD  +Y+ +  GL  +DR  +A +   ++ + G++   + YN     L +
Sbjct: 300 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 359



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 166/389 (42%), Gaps = 57/389 (14%)

Query: 244 NSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF 302
           ++ TYN+++  + GR R    +  + E +  + +  + T+ I + A       K+A+ + 
Sbjct: 31  DAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 90

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M        + T N ++  + +  ++    + L +   +   PN  +Y ++L G C  
Sbjct: 91  DEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTA 150

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           +   +A  +  EM  KG  P+VV  N+++  L + G    A+++ E +   G +PN  SY
Sbjct: 151 ERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSY 210

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             ++  FCKQ                    +   Y  L+T       +D+  +LL ++++
Sbjct: 211 NPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD 270

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE- 520
           +GC P  ++YN +I  +       EA+ +  EMV  G +P I TY+ I     +    E 
Sbjct: 271 KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIED 330

Query: 521 ----------MGRK------------------------VWDEMIRRGCCPDDNSYTVLIG 546
                     MG +                        ++  MI  GC P++++YT+LI 
Sbjct: 331 AIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 390

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           GL  +    EA   L+E+  +  +  +LD
Sbjct: 391 GLAYEGLIKEARDLLDELCSRAGEEILLD 419



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ +YN ++  L  A ++E    ++ EMG+KG   ++ TF + ++        + A
Sbjct: 132 GCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 191

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           + + E + KY       + N LL    + K   +A    D +  R   P++ +Y  LL  
Sbjct: 192 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 251

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR   +  A  + +++ DKG  P ++++N +++GL K GK  +A++L   M +KG  P+
Sbjct: 252 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 311

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+ +    C+++               R++       ++++ G  P+ + YNA+I  
Sbjct: 312 IITYSTIAAGLCRED---------------RIEDAIRAFGKVQDMGIRPNTVLYNAIILG 356

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +  ++    A+ ++  M+ +G  P   TY ++++     G  +  R + DE+  R 
Sbjct: 357 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRA 412



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 8/193 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           K G   NS +YN ++    + ++ +  ++ L+ M  +G    + ++   + A   + E  
Sbjct: 200 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 259

Query: 297 KAVAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYT 352
            AV   EL+++ K K     +   N +++ L ++   KEA +LL + +     P++ TY+
Sbjct: 260 VAV---ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 316

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            +  G CR   + +A R + ++ D G +P+ V +N ++ GL K  +   AI LF  M   
Sbjct: 317 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 376

Query: 413 GPSPNVRSYTIMI 425
           G  PN  +YTI+I
Sbjct: 377 GCMPNESTYTILI 389


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 191/442 (43%), Gaps = 54/442 (12%)

Query: 216 DVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           DVL+R +  R       FF    +   F H + TY  M+  LGR  + + +  +L++M  
Sbjct: 43  DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKM 102

Query: 274 KGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPK 331
            G+   E  F   +N +      ++A+ +F  + ++  K  V   N LL+  L  +K   
Sbjct: 103 DGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQM 162

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG------------- 378
              L  +  K    PN+ TY +LL   C+   +  A +++ EM +KG             
Sbjct: 163 INPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVS 222

Query: 379 -----------------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
                            FKP V  +N +++G+ K G+   AIKL   M   G  PNV SY
Sbjct: 223 SLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSY 282

Query: 422 TIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           + +I                     + C  N   +T LI G   R ++    DL K M +
Sbjct: 283 SCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQ 342

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            GC P+ + YN LI  +      +EA+++  +M RSG  P + TY++++  + ++G+   
Sbjct: 343 DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVG 402

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             + W+ MI  GC P+  +YT ++  L       +A   +E+M  +G     + +N F  
Sbjct: 403 ASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIK 462

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
            L   GR     +L ++M+  G
Sbjct: 463 GLCGNGRVEWAMKLLERMQGHG 484



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 173/393 (44%), Gaps = 26/393 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A + F    +K G   ++ TY +M+S L +A + +       E+  +   S+  +   ++
Sbjct: 198 AHKLFVEMSNK-GCPPDAVTYTTMVSSLCKAGKIDDA----RELAGRFKPSVPVYNALID 252

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
                   + A+ +   M        V + +C++ +L  S   + A  LF ++  R    
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDA 312

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ T+T L+ G      L EA  +W  MI  G +P+VVA+N ++ GL   G   +A+++ 
Sbjct: 313 NIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVC 372

Query: 407 EVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNR 446
           + M+  G  PNV +Y+I+I  F                    C+ N   YTC++      
Sbjct: 373 DQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
              D    L+++M   GC P+ +T+N  IK +      + A+++ + M   G  P I TY
Sbjct: 433 SMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTY 492

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N ++ + F+   YE    ++ E+  R   P+  +Y  ++ G       GEA +   + L 
Sbjct: 493 NELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALV 552

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +G     + YN       + G+  +  +L +++
Sbjct: 553 RGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 177/440 (40%), Gaps = 63/440 (14%)

Query: 206 GINLSHNLVVDVLERFRH--ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET 263
           GIN   +L + ++  ++   +   A + F   G+  G     R YN ++  L    +F+ 
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEF-GCKPTVRIYNHLLDALLSENKFQM 162

Query: 264 MVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
           +  +   M + GL+ ++ T+ I + A         A  +F  M+         T   ++ 
Sbjct: 163 INPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVS 222

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +L ++    +A+    +L  RF P++  Y  L+ G C+   +  A ++  EM+D G  P+
Sbjct: 223 SLCKAGKIDDAR----ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPN 278

Query: 383 VVAHNI-----------------------------------MLEGLLKIGKRSDAIKLFE 407
           VV+++                                    +++G    GK  +A+ L++
Sbjct: 279 VVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK 338

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRR 447
           +M   G  PNV +Y  +I   C                      N   Y+ LI GF    
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            +    +    M   GC P+ +TY  ++ ++    M D+A  + ++M   G  P   T+N
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFN 458

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
             +K     G  E   K+ + M   GC P+  +Y  L+  L   ++  EA+   +E+  +
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518

Query: 568 GMKAPVLDYNKFAADLSRAG 587
            ++  ++ YN      SRAG
Sbjct: 519 NLQPNLVTYNTVLYGFSRAG 538



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 159/387 (41%), Gaps = 58/387 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y+ +++ L  +   E   ++  +M  +G   ++ TF   +       +  +A
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +++LM +   +  V   N L+  L  +   +EA  + D+++     PN+TTY++L+ G
Sbjct: 334 LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDG 393

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  +L+ A   WN MI  G +P+VV +  M++ L K      A  L E M  +G +PN
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453

Query: 418 VRSYTIMI----------WKF----------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++   I          W            C  N   Y  L+       + +  + L +
Sbjct: 454 TMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+E R   P+ +TYN ++       M  EA++++ + +  G  P   TYN ++ +Y + G
Sbjct: 514 EIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQG 573

Query: 518 NYEMGRK---------------------VW---------------DEMIRRGCCPDDNSY 541
             ++  +                     +W               D+ I +G CP+  ++
Sbjct: 574 KVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATW 633

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKG 568
             L+               L+++L KG
Sbjct: 634 NALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 156/312 (50%), Gaps = 27/312 (8%)

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + L+  L GR +      +L + L+ R  P++ TYT+LL   C+     +A ++ +EM
Sbjct: 162 TCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------W 426
            DKG  PD+V +N+++ G+ + G+  DAI+  + + + G  PN  SY I++        W
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 281

Query: 427 ------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                       K C  N   +  LI+    +  ++   ++L+++ + GC P+ L+YN L
Sbjct: 282 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPL 341

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +     QK  D+A+     MV  G  P I +YN ++ +  ++G  ++  ++  ++  +GC
Sbjct: 342 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 401

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P   SY  +I GL    ++ EA + L EM+ KG++  ++ Y+  AA L R       D 
Sbjct: 402 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE------DR 455

Query: 595 LAQKMRFSGKFE 606
           +   +R  GK +
Sbjct: 456 IEDAIRAFGKVQ 467



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 163/361 (45%), Gaps = 25/361 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN+MM+    A Q +       E   E+   + +T    +           A+A+ + M
Sbjct: 130 AYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTL---IRGLCGRGRTANALAVLDEM 186

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            + +    V T   LLE   +    K+A  L D+++ +  TP++ TY V++ G C+   +
Sbjct: 187 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 246

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A      +   G +P+ V++NI+L+GL    +  DA +L   M  KG  PNV ++ ++
Sbjct: 247 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 306

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   C++                    N+  Y  L+  F  +++MD     L  M  RGC
Sbjct: 307 ISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 366

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD ++YN L+  +      D AV +  ++   G  P + +YN ++    + G  +   +
Sbjct: 367 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 426

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + +EM+ +G  PD  +Y+ +  GL  +DR  +A +   ++ + G++   + YN     L 
Sbjct: 427 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC 486

Query: 585 R 585
           +
Sbjct: 487 K 487



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 58/392 (14%)

Query: 234 WAGDKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
           W  ++     ++ T ++++  + GR R    +  + E +  + +  + T+ I + A    
Sbjct: 150 WCAER-AVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKR 208

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTY 351
              K+A+ + + M        + T N ++  + +  ++    + L +   +   PN  +Y
Sbjct: 209 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 268

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            ++L G C  +   +A  +  EM  KG  P+VV  N+++  L + G    A+++ E +  
Sbjct: 269 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 328

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
            G SPN  SY  ++  FCKQ                    +   Y  L+T       +D+
Sbjct: 329 YGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 388

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             +LL +++++GC P  ++YN +I  +       EA+ +  EMV  G +P I TY+ I  
Sbjct: 389 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 448

Query: 512 SYFQTGNYE-----------MGRK------------------------VWDEMIRRGCCP 536
              +    E           MG +                        ++  MI  GC P
Sbjct: 449 GLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMP 508

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++++YT+LI GL  +    EA   L+E+  +G
Sbjct: 509 NESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 24/247 (9%)

Query: 360 RVKNLMEAGRVWN--EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           R+++L+  G +     ++    +PD      +++ L   G+ ++A +   V+ A GP  +
Sbjct: 73  RLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARR---VLAACGP--D 127

Query: 418 VRSYTIMIWKFC---KQNAA------------VYTC--LITGFGNRRRMDIVYDLLKEME 460
           V +Y  M+  +C   + +AA             YTC  LI G   R R      +L EM 
Sbjct: 128 VMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEML 187

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            R C PD +TY  L++    +    +A+++  EM   G  P I TYN+++    Q G  +
Sbjct: 188 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 247

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              +    +   GC P+  SY +++ GL + +R  +A + + EM +KG    V+ +N   
Sbjct: 248 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 307

Query: 581 ADLSRAG 587
           + L R G
Sbjct: 308 SFLCRKG 314



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 10/214 (4%)

Query: 393 LLKIGKRSDA---IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L+   +R DA     L + + A G +   R     +   C  +   Y  ++ G+    ++
Sbjct: 89  LVGSARRPDAGTCAALIKKLSASGRTAEARR----VLAACGPDVMAYNAMMAGYCGAGQV 144

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D      +   ER    D  T + LI+ +  +     A+ +  EM+R    P + TY ++
Sbjct: 145 DAAR---RWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTIL 201

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +++  +   Y+   K+ DEM  +GC PD  +Y V++ G+  + R  +A ++L+ +   G 
Sbjct: 202 LEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 261

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +   + YN     L  A R    +EL  +M   G
Sbjct: 262 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 295


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 175/380 (46%), Gaps = 29/380 (7%)

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
           A + E  +   +EM   G+   +E++ I ++A + +    +A A+F  M        + T
Sbjct: 154 ANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMT 210

Query: 317 INCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            N L++   +     EAQ L+ + LK  + PN+ TY++++  +C++  + EA  V+ +MI
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI 270

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           +    P+ V  N ++ G  K G   DAIKLF  M+  G    + +Y  +I   CK+   V
Sbjct: 271 ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGV 330

Query: 436 YTC---------------------LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           YT                      LI GF + RR+        EME + C P+ +TY+ L
Sbjct: 331 YTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSIL 389

Query: 475 IK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           I  L K+++M  EA +  ++M   G+ PT+ TY  ++  + + G  +     +++M   G
Sbjct: 390 IDGLCKVRRM-KEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAG 448

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C P+   +  LI GL   +R+ +  + L  M  +G K  V+ YN   + L  A R     
Sbjct: 449 CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQ 508

Query: 594 ELAQKMRFSGKFEVSNVLAR 613
            L   M  +      N L R
Sbjct: 509 RLFDGMACAPNVTTFNFLIR 528



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 176/426 (41%), Gaps = 68/426 (15%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL----SMETF-------------- 282
           FA N+ TYN ++    +  Q    VS+  +M   GLL    +M T               
Sbjct: 28  FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 87

Query: 283 ------------------KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL--- 321
                              I +  F  A   + A+A  + M K        T N +L   
Sbjct: 88  KLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGL 147

Query: 322 --ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
             EN   ++L +  +   +       P+L +Y +LL        + EA  +++ M     
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---C 204

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCK-------- 430
            PD++ +N++++G  KIG+  +A  L  E++KA G  PNV +Y+I+I  +CK        
Sbjct: 205 SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA-GYEPNVFTYSIIINCYCKLDKVEEAW 263

Query: 431 ------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KL 477
                        NA  +  LI GF     ++    L  EME+ GC    +TYN LI  L
Sbjct: 264 EVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSL 323

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
            K +     AV ++ ++  +G  PTI TYN +++ +          + +DEM  + C P+
Sbjct: 324 CKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPN 382

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y++LI GL    R  EA K LE+M   G    V+ Y        + G         +
Sbjct: 383 VITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFE 442

Query: 598 KMRFSG 603
           KM+ +G
Sbjct: 443 KMKLAG 448



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 24/288 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ T+N++++   +A   E  + +  EM + G   ++ T+   +++    K+R       
Sbjct: 277 NAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC--KKRGGVYTAV 334

Query: 303 ELMNKYKFKAGVDTI---NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           +L NK +      TI   N L++    ++   EA   FD+++ +  PN+ TY++L+ G C
Sbjct: 335 DLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLC 394

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +V+ + EA +   +M   G+ P VV +  ++ G  K G+   A+  FE MK  G +PN  
Sbjct: 395 KVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNT- 453

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                          ++  LI G     R +    LL  M   GC PD +TYN LI  + 
Sbjct: 454 --------------VIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLC 499

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
                ++A R++  M  +   P + T+N +++        E  R + D
Sbjct: 500 SANRVEDAQRLFDGMACA---PNVTTFNFLIRGLCAQKKVEEARNILD 544



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 148/344 (43%), Gaps = 58/344 (16%)

Query: 318 NCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N LL  L  ++   +A  LF + L   F PN  TY VL+ G+C+   + +A  V+++M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC------- 429
            G  P+    N +L GL +IG+ S A+KLF  M+A    P   S+ I++  F        
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 430 ---------KQNAAV----YTCLITGF----GNRRRMDIVYDLLKEMEERG--------- 463
                    K +++V    Y  ++ G      +  R++   +  KEM+  G         
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 464 -----------------------CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
                                  C PD +TYN L+          EA  + KE++++G++
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYE 240

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY++I+  Y +    E   +V+ +MI   C P+  ++  LI G        +A K 
Sbjct: 241 PNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 300

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRA-GRSYVLDELAQKMRFSG 603
             EM + G KA ++ YN     L +  G  Y   +L  K+  +G
Sbjct: 301 FAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAG 344


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 199/433 (45%), Gaps = 44/433 (10%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           R   +  K I  L +       +L    I +S   V+  L   +   + A RFF W   K
Sbjct: 46  RNASKTAKTIANLINSKPFSNGLLSSLLITISKTTVLRTLRLIKDPSK-ALRFFKWTQQK 104

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSML--EEMGEKGLLSMET--FKIAMNAFAAAKE 294
            GF+H   +Y  M+ ILGR R      + L   E   KG + +E   F   + ++A A  
Sbjct: 105 -GFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGL 163

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENL---GRSKLPKEAQLLFDKL--KHRFTPNLT 349
            K+++ +F+ M        V T N L+  L   GR+ + KE   ++D++   +  +P+  
Sbjct: 164 FKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKE---VYDEMLGTYGVSPDTC 220

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY VL+ G+C+   + E  R + EM       DVV +N +++GL + GK   A  L   M
Sbjct: 221 TYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGM 280

Query: 410 --KAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRR 447
             K +G +PNV +YT +I  +C                    K N   Y  L+ G     
Sbjct: 281 GKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAH 340

Query: 448 RMDIVYDLLKEME-ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           ++D + D+L+ M+ + G  PD  T+N +I L       DEA+++++ M +        +Y
Sbjct: 341 KLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASY 400

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRR-------GCCPDDNSYTVLIGGLISQDRSGEAYK 559
           + +++S  Q G+Y+M  +++DE+  +       G  P   SY  +   L    ++ +A +
Sbjct: 401 STLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAER 460

Query: 560 YLEEMLEKGMKAP 572
            + +++++G + P
Sbjct: 461 VIRQLMKRGTQDP 473



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 166/374 (44%), Gaps = 34/374 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM-GEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           T+NS+MSIL +  +      + +EM G  G+     T+ + +  F       +    F  
Sbjct: 185 TFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFRE 244

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRV 361
           M  +   A V T N L++ L R+   + A+ L + +  +     PN+ TYT L+ G+C  
Sbjct: 245 MESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMK 304

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRS 420
           + + EA  V  EM  +G KP+++ +N +++GL +  K      + E MK+ G  SP+  +
Sbjct: 305 QEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFT 364

Query: 421 YTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +  +I   C                      ++A Y+ LI     +   D+   L  E+ 
Sbjct: 365 FNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELF 424

Query: 461 ER-------GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           E+       G  P   +YN + + +       +A R+ +++++ G +    +Y  ++  +
Sbjct: 425 EKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDP-QSYTTVIMGH 483

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G YE G ++   M+RR   PD   Y  LI G + +D+   A + LE+ML+   +   
Sbjct: 484 CKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKT 543

Query: 574 LDYNKFAADLSRAG 587
             ++   A L   G
Sbjct: 544 STWHSVLAKLLEKG 557



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 140/327 (42%), Gaps = 35/327 (10%)

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK----------HRFT 345
           K A  I  L+N   F  G+  ++ LL  + ++ + +  +L+ D  K            F+
Sbjct: 50  KTAKTIANLINSKPFSNGL--LSSLLITISKTTVLRTLRLIKDPSKALRFFKWTQQKGFS 107

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK----IGKRSD 401
               +Y ++L    R +NL    R +   I+K  K  V   +     L++     G   +
Sbjct: 108 HTPESYFIMLEILGRERNL-NVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKE 166

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM-E 460
           ++KLF+ MK+   SP+V                 +  L++    R R ++  ++  EM  
Sbjct: 167 SMKLFQTMKSIAVSPSV---------------VTFNSLMSILLKRGRTNMAKEVYDEMLG 211

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             G  PD  TYN LI+      M DE  R ++EM        + TYN ++    + G   
Sbjct: 212 TYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVR 271

Query: 521 MGRKVWDEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           + R + + M ++  G  P+  +YT LI G   +    EA   LEEM  +G+K  ++ YN 
Sbjct: 272 IARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNT 331

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKF 605
               L  A +   + ++ ++M+  G F
Sbjct: 332 LVKGLCEAHKLDKMKDVLERMKSDGGF 358



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 175/412 (42%), Gaps = 31/412 (7%)

Query: 181 IERVCK--VIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           I   CK  ++DE F   R ME+   +  + +++N +VD L R    R  A       G K
Sbjct: 226 IRGFCKNSMVDEGFRFFREMESFNCDADV-VTYNTLVDGLCRAGKVR-IARNLVNGMGKK 283

Query: 239 -PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
             G   N  TY +++      ++ E  + +LEEM  +GL  +M T+   +     A +  
Sbjct: 284 CEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLD 343

Query: 297 KAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
           K   + E M +   F     T N ++     +    EA  +F+ +K  R   +  +Y+ L
Sbjct: 344 KMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTL 403

Query: 355 LGGWCRVKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           +   C+  +   A ++++E+ +K       G KP   ++N + E L + GK   A ++  
Sbjct: 404 IRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIR 463

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            +  +G + + +SYT +I   CK+ A                +  Y+LL  M  R   PD
Sbjct: 464 QLMKRG-TQDPQSYTTVIMGHCKEGA---------------YESGYELLMWMLRRDFLPD 507

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
              Y+ LI     +  P  A    ++M++S ++P   T++ ++    + G       V  
Sbjct: 508 IEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIV 567

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            M+ +    + N  T  +  L  +++   A++ +  + + G    + +  +F
Sbjct: 568 MMLEKNVRQNINLSTESLQLLFGREQHERAFEIINLLYKNGYYVKIEEVAQF 619


>gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 212/459 (46%), Gaps = 29/459 (6%)

Query: 168 TSVSYKSTAD-PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARR 226
           T  SY  T +   +I+ +C++I ++ S    +E +LDE G+ +S   V  V++       
Sbjct: 53  TFPSYLETPNLSPKIKLLCEIIAKIPS--STVETILDETGLYVSQYDVEQVIKLSYSFPG 110

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286
           PA +FF WAG +    H+  ++N ++ +LG+   F+ M   ++ M  K L+S+ TF    
Sbjct: 111 PAVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATFASVF 170

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
            ++  A   K A+  FE+MN+Y     V  +N LL  + R     +A       K+   P
Sbjct: 171 GSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKNSIKP 230

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMI-DKGFKP-DVVAHNIMLEGLL--KIGKRSDA 402
           +  T+ +LL GW +  NL+ + + ++EM+ + G+ P +  A++  L  LL  +IG  ++ 
Sbjct: 231 DADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMGRIG-FNEV 289

Query: 403 IKLFEVMKAKGPSPNVRSYTI---------------MIWKFC------KQNAAVYTCLIT 441
           I+  E+MK K   P +R +                 +IW+        + +  +Y  +I+
Sbjct: 290 IEFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYNLMIS 349

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            +      DI    L EM   G  PD  TYN L + +   +   EA  ++ EM+++   P
Sbjct: 350 LYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKNECLP 409

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
                +  ++ +  + +  M  KVW  MI       + +  +LI  L       EA KY 
Sbjct: 410 NQANCSAAVRVFMHSKDPYMAIKVWKCMIENYELDLEETGNLLIVELCDLHMDPEAVKYA 469

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           E M+ KG+K       K    L +A + +V + L +K +
Sbjct: 470 ESMIGKGIKVTSPTMEKLKLCLKQARKEFVYERLLRKWK 508


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 177/383 (46%), Gaps = 25/383 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
            FRFF WA  K     +  ++N ++ +L +   FE    +L+E+   G  +S + F + +
Sbjct: 75  GFRFFIWAS-KFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLI 133

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFT 345
            A+A     +KAV  FE+M  +  K  V T N +L  + R ++   A  ++++ LK    
Sbjct: 134 QAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCL 193

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ T+++L+ G C+      A ++++EM  +   P+ + + I++ GL +  K   A +L
Sbjct: 194 PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRL 253

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
           F  MK  G  P+  +Y  ++  FCK                     +   Y+CLI G   
Sbjct: 254 FIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFR 313

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
            RR +      ++M E    PD + Y  ++K L K  K  D A+R+  EM   G  P  H
Sbjct: 314 ARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKD-ALRLLNEMTERGLVPDTH 372

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            YN ++K Y   G  +  + +  E+ +  C     +YT+LI G+      G+A +   EM
Sbjct: 373 CYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEM 432

Query: 565 LEKGMKAPVLDYNKFAADLSRAG 587
            + G    V+ +N       +AG
Sbjct: 433 EKHGCYPSVVTFNALIDGFCKAG 455



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 168/406 (41%), Gaps = 70/406 (17%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T++ ++  + ++ + +  + M +EM ++ +L  + T+ I ++    A++   A  +F
Sbjct: 195 NIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLF 254

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
             M  +       T N LL    +     EA  L     K R+  +   Y+ L+ G  R 
Sbjct: 255 IAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRA 314

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           +   +A   + +M +   KPDV+ + IM++GL K GK  DA++L   M  +G  P+   Y
Sbjct: 315 RRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCY 374

Query: 422 TIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  +C                      +A  YT LI G      +     +  EME+
Sbjct: 375 NALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEK 434

Query: 462 RGCPPDGLTYNALIK----------------LMKIQKMPD-------------------- 485
            GC P  +T+NALI                  M+I + P                     
Sbjct: 435 HGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQT 494

Query: 486 ------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
                       +A  I  ++  SGF P I TYN+++  + + GN     K++ E+  +G
Sbjct: 495 MVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKG 554

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             PD  +Y  LI GL+S +R  +A+  L+++L+ G       Y  F
Sbjct: 555 LSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSF 600



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 146/367 (39%), Gaps = 52/367 (14%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K  +  + + Y+ ++  L RAR+FE       +M E  +   +  + I M   + A + 
Sbjct: 293 EKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKF 352

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
           K A+ +   M +          N L++      L  EA+ L  ++ K+    +  TYT+L
Sbjct: 353 KDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTIL 412

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKG 413
           + G CR   + +A +++NEM   G  P VV  N +++G  K G    A  LF  M+  + 
Sbjct: 413 ICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRN 472

Query: 414 PSPNVR------------SYTIMIWKFCKQ--------------------NAAVYTCLIT 441
           PS  +R            S   M+ + C                      N   Y  LI 
Sbjct: 473 PSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIH 532

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           GF     ++  + L KE++ +G  PD +TY  LI  +      ++A  +  +++++G  P
Sbjct: 533 GFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTP 592

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
               Y   M    +     +   +W + +R             I G     R  E  K +
Sbjct: 593 ITEVYKSFMTWSCRRNKITLAFSLWLKYLRS------------IPG-----RDSEVLKSV 635

Query: 562 EEMLEKG 568
           EE  EKG
Sbjct: 636 EENFEKG 642



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 87/195 (44%), Gaps = 3/195 (1%)

Query: 412 KGPSPNVRSYTIMIW--KFCKQNAAV-YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           K P  ++  +   IW  KF +  + V +  +I         ++ + +LKE++  G     
Sbjct: 67  KNPPNSLLGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISA 126

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
             +  LI+      M ++AV  ++ M     KP + TYN ++    +     +   +++ 
Sbjct: 127 DAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNR 186

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M++  C P+  ++++LI G+    ++  A +  +EM ++ +    + Y    + L +A +
Sbjct: 187 MLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQK 246

Query: 589 SYVLDELAQKMRFSG 603
           + V   L   M+  G
Sbjct: 247 ADVAYRLFIAMKDHG 261


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 193/422 (45%), Gaps = 29/422 (6%)

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRF--FCWAGDKPGFAHNSRTYNSMMSILGRARQ 260
           + CG   S   ++++L      +   F F      G +P     + TY ++++ L R ++
Sbjct: 52  NSCGTVRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRP----TTVTYTALVAALTRQKR 107

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
           F+ +  +L EM E G+        A+ NAF+ +   K+A+ IF+ M +   K    T N 
Sbjct: 108 FKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNT 167

Query: 320 LLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           L++  G  + P+E+  L + +       PN  TY +L+G  C+ K++ EA  V ++M+  
Sbjct: 168 LIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLAS 227

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G +PDVV +N +     + G+ + A  +   M  K  +PN R+  I++  +C+Q      
Sbjct: 228 GVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEA 287

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         N  ++  LI GF +    D V   L  MEE G  PD +T++ ++  
Sbjct: 288 LRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNG 347

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                  D+   I+ +M++SG +P IH ++++ K + + G       + + M + G  P+
Sbjct: 348 WSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPN 407

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
              +T +I G  +  +  +A+K  E M +  +   +  +         A + +  +E+ Q
Sbjct: 408 VVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQ 467

Query: 598 KM 599
            M
Sbjct: 468 MM 469



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 25/291 (8%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKL---KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           +N L+E   R K P+EAQ +F+ L    HR  P   TYT L+    R K       + +E
Sbjct: 64  MNILVE---RGK-PQEAQFIFNSLVEQGHR--PTTVTYTALVAALTRQKRFKAISGLLSE 117

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M + G KPD +  N ++    + G   +A+++F+ M+  G               CK   
Sbjct: 118 MEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESG---------------CKPTT 162

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
           + +  LI G+G  R+ +    LL+ M       P+  TYN L+  +  +K   EA  +  
Sbjct: 163 STFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVH 222

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           +M+ SG +P + TYN + ++Y Q G       +  +M+ +   P++ +  +++GG   Q 
Sbjct: 223 QMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQG 282

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              EA + +  M + G+   ++ +N         G S  +D+    M  SG
Sbjct: 283 NLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESG 333



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 158/410 (38%), Gaps = 68/410 (16%)

Query: 168 TSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-- 225
           T+V+Y +       ++  K I  L S        ++E GI     L+  ++  F  +   
Sbjct: 91  TTVTYTALVAALTRQKRFKAISGLLS-------EMEETGIKPDSILLNAIINAFSESGNV 143

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFK 283
           + A   F    ++ G    + T+N+++   G  R+ E  + +LE M     L  +  T+ 
Sbjct: 144 KEAMEIF-QKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYN 202

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKH 342
           I + A    K  K+A  +   M     +  V T N L     +     +A+ ++ D L  
Sbjct: 203 ILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNK 262

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK---- 398
           +  PN  T  +++GG+C   NL EA RV   M D G  P++V  N +++G L IG     
Sbjct: 263 KVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGV 322

Query: 399 ------------RSDAI-------------------KLFEVMKAKGPSPNVRSYTIMIWK 427
                       + D I                   ++F+ M   G  P++  ++I+   
Sbjct: 323 DKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKG 382

Query: 428 FCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
           F +                     N  ++T +I+G+    +M+  + + + M +    P+
Sbjct: 383 FVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPN 442

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
             T+  LI      K P  A  I + M      P   T  ++ +++   G
Sbjct: 443 LKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIG 492



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 44/102 (43%)

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           T+ +   +M    + G  +  + +++ ++ +G  P   +YT L+  L  Q R       L
Sbjct: 56  TVRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLL 115

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EM E G+K   +  N      S +G      E+ QKM  SG
Sbjct: 116 SEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESG 157


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 189/417 (45%), Gaps = 24/417 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++HN+++D   RFR     A      +    G      T+NS++  L + R+F+    + 
Sbjct: 193 VTHNVLIDA--RFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVF 250

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
             M +  +   + +F I +  F    E ++A+  ++ M +      V + +CL+     R
Sbjct: 251 RAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTR 310

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K+   A  L +       P+   YT+++GG+CR  ++ EA RV +EM+  G  PDVV +
Sbjct: 311 GKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTY 370

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N +L GL K  +  DA +L   MK +G +P++ ++T +I  +C+                
Sbjct: 371 NTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLH 430

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +   Y  LI G   +  +    +L  +M  R   P+ +TY+ LI     +   +E
Sbjct: 431 QRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEE 490

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A     EMV  G  P I TYN I+K Y ++GN + G++   +M++    PD  ++  LI 
Sbjct: 491 AFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIH 550

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G I ++    A+     M ++ ++   + YN      S  G       + +KM  SG
Sbjct: 551 GYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASG 607



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 170/355 (47%), Gaps = 23/355 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   +  +++ ++ +     + +   + L EM   GL+     + + +  F  A    +A
Sbjct: 292 GVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + + M        V T N LL  L +     +A+ L +++K R  TP+L T+T L+ G
Sbjct: 352 LRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHG 411

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  N  +A ++++ ++ +  +PDVVA+N +++G+ + G  + A +L++ M A+   PN
Sbjct: 412 YCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPN 471

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y+I+I   C++                    N   Y  +I G+     +      L+
Sbjct: 472 HVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQ 531

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M +    PD +T+N LI     ++    A  ++  M +   +P   TYNMI+  + + G
Sbjct: 532 KMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQG 591

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           N E   +V+ +M   G  PD  +Y  LI G ++   S EA++  +EM+ +G  AP
Sbjct: 592 NMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGF-AP 645



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 16/273 (5%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T+N ++ +  +S    +A  +  +++ R   P++ T+ VL+    R  ++  A  + + M
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
            +KG KP +V  N +L+GL K  +   A ++F  M     +P+VRS+ I+I  FC+    
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVG-- 276

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                         ++      KEM++RG  PD ++++ LI L   +   D A    +EM
Sbjct: 277 -------------EVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM 323

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G  P    Y M++  + + G+     +V DEM+  GC PD  +Y  L+ GL  Q R 
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRL 383

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            +A + L EM E+G+   +  +        R G
Sbjct: 384 LDAEELLNEMKERGVTPDLCTFTTLIHGYCRDG 416



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 140/321 (43%), Gaps = 22/321 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +   Y  ++    RA      + + +EM   G L  + T+   +N          A
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             +   M +      + T   L+    R    ++A  LFD L H R  P++  Y  L+ G
Sbjct: 387 EELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDG 446

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR  +L +A  +W++M  +   P+ V ++I+++   + G+  +A    + M +KG  PN
Sbjct: 447 MCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPN 506

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I  +C+                     +   +  LI G+     M   +++  
Sbjct: 507 IMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFN 566

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            ME+    PD +TYN +I     Q   +EA R++K+M  SG +P  +TY  ++  +   G
Sbjct: 567 IMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAG 626

Query: 518 NYEMGRKVWDEMIRRGCCPDD 538
           N +   ++ DEM+ RG  PDD
Sbjct: 627 NSKEAFQLHDEMMHRGFAPDD 647



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 117/281 (41%), Gaps = 18/281 (6%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           LL  + R +     +++   L    TP    + +L+  + + +   EA   +  ++D   
Sbjct: 59  LLLRMSRRRGASRREIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRV 118

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
                A N +L  L + G    A + + ++ +     N  +  IM+  +CK         
Sbjct: 119 PVPASASNALLAALSRAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKS-------- 170

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                     D    ++ EME+R   PD +T+N LI         D A+ +   M   G 
Sbjct: 171 -------LEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGL 223

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP I T+N ++K   +   ++  ++V+  M +    PD  S+ +LIGG        EA K
Sbjct: 224 KPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMK 283

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           + +EM ++G+   V+ ++      S  G+   +D  A  +R
Sbjct: 284 FYKEMQQRGVTPDVVSFSCLIGLFSTRGK---MDHAAAYLR 321


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 189/402 (47%), Gaps = 26/402 (6%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGINL-SHNLVVDVLERFRHARR-PAFRFFCWAG 236
           I  +C+V  +DE  ++ + M    D+C   + ++ ++V  L  F   RR  A   F    
Sbjct: 46  IHGLCEVGRVDEGINIFKKMRE--DDCYPTVRTYTVIVHAL--FESGRRMEAINLFSEMR 101

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY  M++ + +  + E    +L+EM EKGL+ S+ T+   ++ +      
Sbjct: 102 ER-GCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMV 160

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
           + A  I +LM+         T N L+    R K    A  L  K L+ R TP++ TY  L
Sbjct: 161 EAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSL 220

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C++  L  A R+ N M + G  PD   +++ ++ L K G+  +A  LF  +K KG 
Sbjct: 221 IHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKG- 279

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                          K N  +YT LI G+    +MD    LL  M    C P+  TYNAL
Sbjct: 280 --------------IKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNAL 325

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +  ++   EA+ + + M++ G K T+ TY +++ +  + G+++   ++ D+M+  G 
Sbjct: 326 IDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGY 385

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            PD   YT  I    ++    EA   +  M E+G+    L Y
Sbjct: 386 QPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTY 427



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 145/328 (44%), Gaps = 21/328 (6%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           + + IF+ M +      V T   ++  L  S    EA  LF +++ R   PN+ TYTV++
Sbjct: 57  EGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMI 116

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+   L E  R+ +EM++KG  P V  +N +++G  K G    A ++ ++M +   +
Sbjct: 117 NAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCN 176

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PN R+Y  +I  FC++                    +   Y  LI G      +D  Y L
Sbjct: 177 PNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL 236

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L  M E G  PD  TY+  I  +  +   +EA  ++  +   G K     Y  ++  Y +
Sbjct: 237 LNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCK 296

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  +    + D M+   C P+ ++Y  LI GL  + +  EA   +E M++KG+K  V  
Sbjct: 297 AGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPT 356

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           Y      + + G       +  +M  SG
Sbjct: 357 YTILIVAMLKEGDFDYAHRILDQMVSSG 384



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 163/387 (42%), Gaps = 51/387 (13%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N RTYN ++    R +     +++L +M E  L  S+ T+   ++          A  + 
Sbjct: 178 NERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLL 237

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            LMN+        T +  ++ L +    +EA +LF+ LK +    N   YT L+ G+C+ 
Sbjct: 238 NLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKA 297

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  + + M+ +   P+   +N +++GL K  K  +A+ L E M  KG    V +Y
Sbjct: 298 GKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTY 357

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           TI+I    K+                    +  +YT  I  F  R  +    D++  M E
Sbjct: 358 TILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFE 417

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK---------- 511
           RG  PD LTY  +I       + + A  + K M  +G  P+ HTY+ ++K          
Sbjct: 418 RGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKK 477

Query: 512 -------------------SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
                                ++   +E   +++++M+  GC P+ N+Y  LI GL    
Sbjct: 478 YKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVG 537

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           R G A K  + M E+G+      YN  
Sbjct: 538 RLGVAQKLFDHMNERGVSPSEAIYNSL 564



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 24/243 (9%)

Query: 354 LLGGWCRVKNLMEAG---------RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           ++ G+C++ NL+EA           V+N M  KG + + V++  ++ GL ++G+  + I 
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +F+ M+     P VR+YT+++                 F + RRM+ + +L  EM ERGC
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHAL--------------FESGRRMEAI-NLFSEMRERGC 105

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+  TY  +I  M  +   +E  RI  EMV  G  P++ TYN ++  Y + G  E  ++
Sbjct: 106 EPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQE 165

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + D M    C P++ +Y  LI G   +     A   L +MLE  +   V+ YN       
Sbjct: 166 ILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQC 225

Query: 585 RAG 587
           + G
Sbjct: 226 KIG 228



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 20/273 (7%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  +YT L+ G C V  + E   ++ +M +    P V  + +++  L + G+R +AI LF
Sbjct: 38  NEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLF 97

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M+ +G  PN+ +YT+MI   CK+                    +   Y  LI G+   
Sbjct: 98  SEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKE 157

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             ++   ++L  M    C P+  TYN LI     +K    A+ +  +M+ S   P++ TY
Sbjct: 158 GMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTY 217

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N ++    + G  +   ++ + M   G  PD  +Y+V I  L  + R  EA      + E
Sbjct: 218 NSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKE 277

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           KG+KA  + Y        +AG+    + L  +M
Sbjct: 278 KGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 148/358 (41%), Gaps = 46/358 (12%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           NS TYN+++  L + R+ +  + ++E M +KGL  ++ T+ I + A     +   A  I 
Sbjct: 318 NSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRIL 377

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M    ++  V      +         KEA+ +   +  R   P+  TYT+++  +  +
Sbjct: 378 DQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGL 437

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-------------------------- 395
             L  A  V   M D G  P    ++ +++ LLK                          
Sbjct: 438 GLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVAD 497

Query: 396 ---IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
              + K   A++LFE M   G SPN+ +Y  +I   CK                 R+ + 
Sbjct: 498 VWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVG---------------RLGVA 542

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L   M ERG  P    YN+L+       +  +AVR+   M+  G  P + + N++   
Sbjct: 543 QKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCG 602

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            ++ G+ E  + V+  +++ G   D+ ++ +LI GL+    S    + L  M  +G +
Sbjct: 603 LYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQ 660



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%)

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           + +M  K C++N   YT LI G     R+D   ++ K+M E  C P   TY  ++  +  
Sbjct: 27  FNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFE 86

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
                EA+ ++ EM   G +P IHTY +++ +  +    E GR++ DEM+ +G  P   +
Sbjct: 87  SGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPT 146

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           Y  LI G   +     A + L+ M           YN+      R    +    L  KM
Sbjct: 147 YNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKM 205



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 68/279 (24%)

Query: 256 GRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           G  ++ E M+SM   M E+G++    T+ + ++A+        A  + + M    F  G 
Sbjct: 403 GNIKEAEDMMSM---MFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM----FDTGC 455

Query: 315 D----TINCLLENLGRSKLPKE-----------------------------AQLLFDK-L 340
           D    T +CL+++L + +L K+                             A  LF+K L
Sbjct: 456 DPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKML 515

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           +H  +PN+ TY  L+ G C+V  L  A ++++ M ++G  P    +N +L    ++G   
Sbjct: 516 EHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYG 575

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFC-------KQNAAV----------------YT 437
           DA++L   M   G  P + S  ++   FC       K+ A V                + 
Sbjct: 576 DAVRLVGAMMEHGHLPLLESLNVL---FCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWK 632

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            LI G       D   +LL  ME RGC     TY  LI+
Sbjct: 633 ILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIE 671


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 190/396 (47%), Gaps = 34/396 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A N  TYN +++ L +  +FE    ++ EM + GL +S  T+   +  +       +A
Sbjct: 264 GCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++ E M        V T N  +  L +  ++    Q L D L +   P++ +Y  L+ G
Sbjct: 324 LSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+ NLM+A  +++E+      P +V +N +L+GL + G+   A +L   M  +G +P+
Sbjct: 384 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD 443

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITG---FGNRRRMDIVYD 454
           + +YTI++   CK                     ++  Y   I G    G+  R    + 
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSR---AFS 500

Query: 455 LLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           L +EM  +G PPD + YN ++  L K+  + +EA  + ++MV  G  P   TY  I+ ++
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNL-EEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G    GR+++ EM+ +G  P   +YTVLI G   + R   A+ Y  EM EKG+   V
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 574 LDYNKFAADLSRAGR---SY-VLDELAQKMRFSGKF 605
           + YN     L +  R   +Y    E+ +K  F  K+
Sbjct: 620 ITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKY 655



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 175/386 (45%), Gaps = 62/386 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G +    TYNS +  L +  +    +  L +M    LL  + ++   +  +       KA
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
             +F EL + Y F   V T N LL+ L R  +L    QL  + +     P++ TYT+L+ 
Sbjct: 394 FLLFDELRSIYLFPTIV-TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 357 GWCRVKNLMEAGRVWNEMID-----------------------------------KGFKP 381
           G C++ +L  A   ++EM+                                    KGF P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI------------------ 423
           D++ +N++++GL K+G   +A +L + M + G  P+  +YT                   
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 424 --MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
             M+ K    +   YT LI G   + R++  +    EM+E+G  P+ +TYN+LI  L K+
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKV 632

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           ++M D+A   + EMV  G  P  ++Y +++      GN++    ++ +M+ RG  PD  +
Sbjct: 633 RRM-DQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCT 691

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLE 566
           ++ L+  L  +D   +A + LE +L+
Sbjct: 692 HSALLKQL-GKDCKLQAVRQLESLLD 716



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 145/331 (43%), Gaps = 27/331 (8%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KAV ++  M ++  K  + T N LL++  +    ++   L  +++ R   PN  TY VL+
Sbjct: 217 KAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLI 276

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  +     +A  +  EM+  G K     +N ++ G    G  ++A+ L E M  KG S
Sbjct: 277 NGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGAS 336

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGF---GNRRRMDIV 452
           P V +Y   I+  CK                     +   Y  LI G+   GN  +  ++
Sbjct: 337 PTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLL 396

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           +D L+ +      P  +TYN L+  +  Q   + A ++  EM+  G  P I TY +++  
Sbjct: 397 FDELRSIY---LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 453

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G+  M ++ +DEM+  G   D  +Y   I G +    +  A+   EEML KG    
Sbjct: 454 SCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPD 513

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++ YN     L + G      EL QKM   G
Sbjct: 514 LIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 188/464 (40%), Gaps = 87/464 (18%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L V VL  FR + R A R F WA  +PGF  +   + +++ IL +     +   ++E  
Sbjct: 82  DLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMER- 140

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
               +++    +I           + +V I +L               L+    +  + +
Sbjct: 141 ----VINANMHRIVDVLIGGCVSSEVSVKILDL---------------LIWVYSKKSMVE 181

Query: 332 EAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM-EAGRVWNEMIDKGFKPDVVAHNIM 389
           +   +FDK+ K R +P++     +L    R K+LM +A  V+  M + G KP +V +N +
Sbjct: 182 QCLSVFDKMIKSRLSPDVKNCNRILR-ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           L+   K GK    + L   M+ +G +PN  +Y ++I    K+                  
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPD--- 485
             +A  Y  LI G+ N+  +     L +EM  +G  P   TYN+ I  L K+ +M D   
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 486 -------------------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
                                          +A  ++ E+      PTI TYN ++    
Sbjct: 361 QLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLC 420

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E+ +++  EMI  G  PD  +YT+L+ G         A ++ +EML +G++   L
Sbjct: 421 RQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE---L 477

Query: 575 DYNKFAA------DLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
           D   +A        L    R++ L E      F     + NV+ 
Sbjct: 478 DSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVV 521


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 141/280 (50%), Gaps = 21/280 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           +TP++   T L+ G+   +N+ +A RV  E++++  KPDV A+N ++ G +K  +  +A 
Sbjct: 100 YTPDVILCTKLIKGFFNSRNIGKATRVM-EILERYGKPDVFAYNALISGFIKANQLENAN 158

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
           ++ + MK++G  P+V +Y IMI  FC +                        YT LI   
Sbjct: 159 RVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEAT 218

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
                +D+   LL EM  +G  PD LTYNA+I+ M  + M D+A  + + +   G KP I
Sbjct: 219 ILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDI 278

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TYN+++++    G +  G K+  EMI  GC P+  ++++LIG L    +  EA   L  
Sbjct: 279 ITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRS 338

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M EKG+K     Y+   A   R GR  +  E  + M   G
Sbjct: 339 MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDG 378



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 173/363 (47%), Gaps = 24/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN+++S   +A Q E    +L+ M  +G L  + T+ I + +F +  +   A+ IFE + 
Sbjct: 141 YNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELL 200

Query: 307 KYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +  V T   L+E  +    +    +LL + L     P+  TY  ++ G C+   + 
Sbjct: 201 KDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVD 260

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  +   +  +G KPD++ +NI+L  LL  GK S+  KL   M + G  PNV +++I+I
Sbjct: 261 KAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILI 320

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C+                 +++   +LL+ M+E+G  PD   Y+ LI     +   D
Sbjct: 321 GTLCRDG---------------KVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLD 365

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            A    + M+  G  P I  YN IM    +TG  +   +V++++   GC P+ +SY  L 
Sbjct: 366 LATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLF 425

Query: 546 GGLISQDRSGEAYKYLE---EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
             L S   SG+ Y+ LE   ++L +G+    + YN   + L R G      EL   M+ S
Sbjct: 426 SALWS---SGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQ-S 481

Query: 603 GKF 605
           G++
Sbjct: 482 GRY 484



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 170/388 (43%), Gaps = 61/388 (15%)

Query: 257 RARQFETMVSMLEEMGEKG-----LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           RA ++   +  LE M +KG     +L  +  K     F  ++   KA  + E++ +Y  K
Sbjct: 81  RAGKYNESLYFLECMVDKGYTPDVILCTKLIK----GFFNSRNIGKATRVMEILERYG-K 135

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRV 370
             V   N L+    ++   + A  + D++K R F P++ TY +++G +C    L  A  +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           + E++    +P V+ + I++E  +  G    A+KL + M +KG  P+  +Y  +I   CK
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-------------- 476
           +                 +D  ++LL+ +  RGC PD +TYN L++              
Sbjct: 256 E---------------MMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKL 300

Query: 477 ---LMKIQKMP------------------DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
              ++ I   P                  +EAV + + M   G KP  + Y+ ++  + +
Sbjct: 301 ISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCR 360

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  ++  +  + MI  GC PD  +Y  ++ GL    ++ +A +  E++ E G    V  
Sbjct: 361 EGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSS 420

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           YN   + L  +G  Y   E+  K+   G
Sbjct: 421 YNTLFSALWSSGDRYRALEMILKLLNQG 448


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 206/491 (41%), Gaps = 66/491 (13%)

Query: 171 SYKSTADPREIERVCKVIDELFSLDRNMEAV-LDECGINLSHNLVVDVLERFRHARRPAF 229
           SY S     +  R  K  D + S+   M +V +  C  +LS      ++E F + ++P+F
Sbjct: 58  SYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSA-----LIESFVNTQKPSF 112

Query: 230 RF------------------------FCWAGD------------KPGFAHNSRTYNSMMS 253
            F                        FC +GD            +     +  +YN++++
Sbjct: 113 AFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVIN 172

Query: 254 ILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
            L + ++      + +EM G +   +  TF   ++ F    + ++   + E M K   + 
Sbjct: 173 GLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEG 232

Query: 313 GVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
            V   + L+     +  + +  +L  + L+   TPN+ TY+ L+   C+ +   EA ++ 
Sbjct: 233 DVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQML 292

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           + M     +PDVVA+ ++ +GL K G+ SDAIK+ ++M  +G  PN  +Y  +I   CK+
Sbjct: 293 DTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKE 352

Query: 432 --------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM--EERGCPPDGL 469
                               +   Y+ L+ G     ++D   DLL  +  +E    PD  
Sbjct: 353 GRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVF 412

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
            +N +I+ +  Q+    A R+Y  MV  GF   I TYN+++  Y   G      ++W + 
Sbjct: 413 AFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDA 472

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           +  G  P+  +YTVLI GL        A     +    G +  V +YN   A L R    
Sbjct: 473 VDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSV 532

Query: 590 YVLDELAQKMR 600
                L Q+MR
Sbjct: 533 EQARNLFQEMR 543



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 159/347 (45%), Gaps = 20/347 (5%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           GRA     ++ ++ + GE+   +  T+   +N          A+ I E M K   K  V 
Sbjct: 318 GRASDAIKVLDLMVKRGEEP--NNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVV 375

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           T + L++ L G  K+ +   LL   +   F   P++  + +++   C+ + L  A RV+ 
Sbjct: 376 TYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYY 435

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
            M+++GF  ++V +NI+++G L  GK + A++L++     G SPN               
Sbjct: 436 TMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPN--------------- 480

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
           AA YT LI G    + + I   L  +    G  P    YN L+  +  +   ++A  +++
Sbjct: 481 AATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQ 540

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM  +   P + ++N+I+    + G+ E  +++  EM+     PD+ ++++LI   +   
Sbjct: 541 EMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLG 600

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +  EA    E M+  G     + ++      S  G++  +  + Q+M
Sbjct: 601 QLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQM 647



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 157/353 (44%), Gaps = 30/353 (8%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           G++P    N+ TYN++++ L +  + +  + +LE M +KG    + T+   +       +
Sbjct: 334 GEEP----NNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK 389

Query: 295 RKKAVAIFELM--NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTY 351
             +AV +  L+   ++  K  V   N +++ L + +  + A+ ++  +  R F  N+ TY
Sbjct: 390 IDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTY 449

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            +L+ G+     L +A  +W + +D G  P+   + +++ GL K+   S A  LF   +A
Sbjct: 450 NILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA 509

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
            G  P V  Y  ++   C++                    +   +  +I G      ++ 
Sbjct: 510 SGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVES 569

Query: 452 VYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             +LL EM      PD +T++ LI + +K+ ++ DEA  +Y+ MV  G  P    ++ ++
Sbjct: 570 AKELLLEMLNMNLVPDNITFSILINRFLKLGQL-DEAASLYERMVSCGHVPDAVLFDSLL 628

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           K Y   G  E    +  +M  +    D    + ++  L +  +  +  K L +
Sbjct: 629 KGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPK 681



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+ ++   L+    + K+      V ++M      P   + + ++E  +   K S A  +
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGV 116

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC- 464
             ++  +G   NV ++ +++  FC+   +            + MD+       M +R C 
Sbjct: 117 LGLIMKRGFHLNVYNFNLLLKGFCQSGDS-----------HKAMDLFC-----MMKRNCL 160

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD ++YN +I  +   K   EA  ++KEM     KP   T++ ++  + + G+ E G  
Sbjct: 161 IPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFG 220

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           + +EM + G   D   Y+ LI G  S+       +   EML K +   V+ Y+
Sbjct: 221 LLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYS 273


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 190/396 (47%), Gaps = 34/396 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A N  TYN +++ L +  +FE    ++ EM + GL +S  T+   +  +       +A
Sbjct: 264 GCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++ E M        V T N  +  L +  ++    Q L D L +   P++ +Y  L+ G
Sbjct: 324 LSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+ NLM+A  +++E+      P +V +N +L+GL + G+   A +L   M  +G +P+
Sbjct: 384 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD 443

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITG---FGNRRRMDIVYD 454
           + +YTI++   CK                     ++  Y   I G    G+  R    + 
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSR---AFS 500

Query: 455 LLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           L +EM  +G PPD + YN ++  L K+  + +EA  + ++MV  G  P   TY  I+ ++
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNL-EEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G    GR+++ EM+ +G  P   +YTVLI G   + R   A+ Y  EM EKG+   V
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 574 LDYNKFAADLSRAGR---SY-VLDELAQKMRFSGKF 605
           + YN     L +  R   +Y    E+ +K  F  K+
Sbjct: 620 ITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKY 655



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 165/368 (44%), Gaps = 61/368 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G +    TYNS +  L +  +    +  L +M    LL  + ++   +  +       KA
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
             +F EL + Y F   V T N LL+ L R  +L    QL  + +     P++ TYT+L+ 
Sbjct: 394 FLLFDELRSIYLFPTIV-TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 357 GWCRVKNLMEAGRVWNEMID-----------------------------------KGFKP 381
           G C++ +L  A   ++EM+                                    KGF P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI------------------ 423
           D++ +N++++GL K+G   +A +L + M + G  P+  +YT                   
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 424 --MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
             M+ K    +   YT LI G   + R++  +    EM+E+G  P+ +TYN+LI  L K+
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKV 632

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           ++M D+A   + EMV  G  P  ++Y +++      GN++    ++ +M+ RG  PD  +
Sbjct: 633 RRM-DQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCT 691

Query: 541 YTVLIGGL 548
           ++ L+  L
Sbjct: 692 HSALLKQL 699



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 145/331 (43%), Gaps = 27/331 (8%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KAV ++  M ++  K  + T N LL++  +    ++   L  +++ R   PN  TY VL+
Sbjct: 217 KAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLI 276

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  +     +A  +  EM+  G K     +N ++ G    G  ++A+ L E M  KG S
Sbjct: 277 NGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGAS 336

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGF---GNRRRMDIV 452
           P V +Y   I+  CK                     +   Y  LI G+   GN  +  ++
Sbjct: 337 PTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLL 396

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           +D L+ +      P  +TYN L+  +  Q   + A ++  EM+  G  P I TY +++  
Sbjct: 397 FDELRSIY---LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 453

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G+  M ++ +DEM+  G   D  +Y   I G +    +  A+   EEML KG    
Sbjct: 454 SCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPD 513

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++ YN     L + G      EL QKM   G
Sbjct: 514 LIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 188/464 (40%), Gaps = 87/464 (18%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L V VL  FR + R A R F WA  +PGF  +   + +++ IL +     +   ++E  
Sbjct: 82  DLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMER- 140

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
               +++    +I           + +V I +L               L+    +  + +
Sbjct: 141 ----VINANMHRIVDVLIGGCVSSEVSVKILDL---------------LIWVYSKKSMVE 181

Query: 332 EAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM-EAGRVWNEMIDKGFKPDVVAHNIM 389
           +   +FDK+ K R +P++     +L    R K+LM +A  V+  M + G KP +V +N +
Sbjct: 182 QCLSVFDKMIKSRLSPDVKNCNRILR-ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           L+   K GK    + L   M+ +G +PN  +Y ++I    K+                  
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPD--- 485
             +A  Y  LI G+ N+  +     L +EM  +G  P   TYN+ I  L K+ +M D   
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 486 -------------------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
                                          +A  ++ E+      PTI TYN ++    
Sbjct: 361 QLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLC 420

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E+ +++  EMI  G  PD  +YT+L+ G         A ++ +EML +G++   L
Sbjct: 421 RQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE---L 477

Query: 575 DYNKFAA------DLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
           D   +A        L    R++ L E      F     + NV+ 
Sbjct: 478 DSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVV 521



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EM  KGL  S+ T+ + ++  A     ++A   F  M +      V T N L+  L + +
Sbjct: 574 EMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVR 633

Query: 329 LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              +A   F ++  +   PN  +YT+L+   C + N  EA  ++ +M+D+G +PD   H+
Sbjct: 634 RMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHS 693

Query: 388 IMLEGLLK 395
            +L+ L K
Sbjct: 694 ALLKQLGK 701


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 195/468 (41%), Gaps = 91/468 (19%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE- 270
            L+V VL   RH    A RFF WA  + GF  +  TY  ++ IL R     +   ++E+ 
Sbjct: 48  QLLVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKV 107

Query: 271 --------------------------MGEKGLLS---------METFKIAMNAFAAAKER 295
                                     M EK LL          +   K         ++R
Sbjct: 108 VSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDR 167

Query: 296 KKAV----AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTT 350
             ++     ++ +M +   +  V T N +L++  +    +EA QLL    K    PN  T
Sbjct: 168 DSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVT 227

Query: 351 YTVLLG-----------------------------------GWCRVKNLMEAGRVWNEMI 375
           Y VL+                                    G+C    L EA R+  EM+
Sbjct: 228 YNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEML 287

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
            +G  P +V +N ++ GL K G+ SDA KL +VM  K   P++ SY  +I+ +       
Sbjct: 288 SRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY------- 340

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                T  GN   +   + L  E+  RG  P  +TYN LI  +      D A+R+  EM+
Sbjct: 341 -----TRLGN---IGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMI 392

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           + G  P + T+ ++++ + + GN  M ++++DEM+ RG  PD  +Y   I G +      
Sbjct: 393 KHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPS 452

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +A+   EEML +G    ++ YN F   L + G      EL +KM ++G
Sbjct: 453 KAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNG 500



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 198/463 (42%), Gaps = 65/463 (14%)

Query: 170 VSYKSTADPREIERVCKVI---DELFSLDRNMEAVLDECGIN---LSHNLVVDVLERFRH 223
           VS     D +   RV +++   D    + R +  V+ ECGI    +++N ++D   + + 
Sbjct: 146 VSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCK-QG 204

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETF 282
             + A +       K G   N  TYN +++ L  + + E    +++EM   GL +S  T+
Sbjct: 205 KVQEALQLLLQM-QKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTY 263

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342
              +  +    +  +A  + E M        + T N ++  L +     +A+ L D + +
Sbjct: 264 DPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVN 323

Query: 343 R-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           +   P+L +Y  L+ G+ R+ N+ EA  ++ E+  +G  P VV +N +++GL ++G    
Sbjct: 324 KNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDV 383

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A++L + M   GP P+V ++TI++  FCK                     +   Y   I 
Sbjct: 384 AMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIV 443

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           G          + + +EM  RG PPD +TYN  I  +       EA  + K+M+ +G  P
Sbjct: 444 GELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVP 503

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI---------------- 545
              TY  I+ ++   G+    R V+ EM+ +G  P   +YTVLI                
Sbjct: 504 DHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHF 563

Query: 546 -------------------GGLISQDRSGEAYKYLEEMLEKGM 569
                               GL    +  +AYK+  EM  KG+
Sbjct: 564 FEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGI 606



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 171/380 (45%), Gaps = 60/380 (15%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++M  L +  +      +L+ M  K L+  + ++   +  +       +A  +F  +
Sbjct: 297 TYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAEL 356

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   V T N L++ L R   L    +L  + +KH   P++ T+T+L+ G+C++ NL
Sbjct: 357 RFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNL 416

Query: 365 MEAGRVWNEMIDKG-----------------------------------FKPDVVAHNIM 389
             A  +++EM+++G                                   F PD++ +N+ 
Sbjct: 417 PMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVF 476

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI--------------------MIWKFC 429
           ++GL K+G   +A +L + M   G  P+  +YT                     M+ K  
Sbjct: 477 IDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGI 536

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAV 488
             +   YT LI  +  R R+ +      EM E+G  P+ +TYNALI  L K++KM D+A 
Sbjct: 537 FPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKM-DQAY 595

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           + + EM   G  P  +TY +++      G+++   +++ +M+ R   PD  +++ L+  L
Sbjct: 596 KFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHL 655

Query: 549 ISQDRSGEAYKYLEEMLEKG 568
            ++D      ++LE ++  G
Sbjct: 656 -NKDYKSHVVRHLENVIAAG 674


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 171/368 (46%), Gaps = 17/368 (4%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
            K GF  +  T  S+++   +  +F+  VS+++ M E GL  ++  +   +N     ++  
Sbjct: 678  KLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLN 737

Query: 297  KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             A+ IF  M K    A   T N L+  L  S +    A+LL D +K +  PN+  +T L+
Sbjct: 738  NALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 797

Query: 356  GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              + +  NL+EA  ++ EMI +   P+++ +N ++ G    G+  DA  +F++M +KG  
Sbjct: 798  DTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCF 857

Query: 416  PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            P+V +Y  +I  FCK                +R++    L  EM  +G   D  TYN LI
Sbjct: 858  PDVVTYNTLITGFCKS---------------KRVEDGMKLFCEMTHQGLVGDAFTYNTLI 902

Query: 476  KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     + A +++  MV  G  P I TYN+++      G  E    + +++ +    
Sbjct: 903  HGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMD 962

Query: 536  PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
             D  +Y ++I G+   D+  EA+     +  KG+K   + Y    + L R G     D+L
Sbjct: 963  VDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKL 1022

Query: 596  AQKMRFSG 603
              +M+  G
Sbjct: 1023 CTRMKEDG 1030



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 161/360 (44%), Gaps = 22/360 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ + +  +F+ ++ +  +M   G+   + +F I ++ F        A+A+   M 
Sbjct: 618 FTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMM 677

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K  F+  + T+  LL    +    +EA  L D +      PN+  Y  ++ G C+ ++L 
Sbjct: 678 KLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLN 737

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  ++  M  KG   D V +N ++ GL   G+ +DA +L   M  +   PNV  +T +I
Sbjct: 738 NALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 797

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K+                    N   Y  LI GF  + R+     +   M  +GC 
Sbjct: 798 DTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCF 857

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN LI      K  ++ ++++ EM   G      TYN ++  Y Q G   + +KV
Sbjct: 858 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 917

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ M+  G  PD  +Y +L+  L +  +  +A   +E++ +  M   ++ YN     + R
Sbjct: 918 FNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCR 977



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 16/332 (4%)

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-S 327
           E +  + + S+  F   + A A   +    + +F  M        + +   L+    R S
Sbjct: 605 EMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCS 664

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           +      LL   +K  F P++ T   LL G+C+     EA  + + M + G +P+VV +N
Sbjct: 665 RFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYN 724

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            ++ GL K    ++A+++F  M+ KG   +               A  Y  LI+G  N  
Sbjct: 725 TVINGLCKNRDLNNALEIFYGMEKKGIVAD---------------AVTYNTLISGLCNSG 769

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R      LL++M +R   P+ + + ALI     +    EA  +YKEM+R    P I TYN
Sbjct: 770 RWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYN 829

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++  +   G     + ++D M+ +GC PD  +Y  LI G     R  +  K   EM  +
Sbjct: 830 SLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQ 889

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G+      YN       +AG+  V  ++  +M
Sbjct: 890 GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 921



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 155/364 (42%), Gaps = 23/364 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ +   R++ET++   ++M   G+   + +F I ++ F        A++I   M 
Sbjct: 68  FTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMM 127

Query: 307 KYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  +   + T   LL     R+++     L+   +K  + PN+  Y  L+   C+  ++ 
Sbjct: 128 KLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVN 187

Query: 366 EAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            A  + NEM  KG    D+V +N +L GL   G+   A ++   M  +  +P+V ++T +
Sbjct: 188 IALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTAL 247

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  F KQ                    N   Y  LI G     R+         M  +GC
Sbjct: 248 IDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGC 307

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+ +TYN LI      +  ++ +++++ M R G      TYN ++  Y Q G   + + 
Sbjct: 308 FPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKD 367

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M+  G  PD  ++ +L+ GL      G A     +M        ++ YN     L 
Sbjct: 368 IFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLC 427

Query: 585 RAGR 588
           +A +
Sbjct: 428 KADK 431



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 147/346 (42%), Gaps = 16/346 (4%)

Query: 260 QFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +FE  + +  EM + + L S+  F   + A A  +  +  +   + M  +     + +  
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104

Query: 319 CLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+    R S+L     +L   +K  + P++ T+  LL G+C    + +A  +   M+  
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G++P+VV +N +++ L K G  + A++L   M+ KG                  +   Y 
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLA--------------ADLVTYN 210

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+TG            +L++M +R   PD  T+ ALI     Q   DEA  +YK+M++S
Sbjct: 211 TLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQS 270

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
              P   TYN ++      G     +K +D M  +GC P+  +Y  LI G     R  + 
Sbjct: 271 SIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDG 330

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            K  + M  +G+      YN       + G+  V  ++   M   G
Sbjct: 331 MKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG 376



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 20/336 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKER 295
           K G+  N   YN+++  L +       + +L EM +KG L+ +  T+   +     + E 
Sbjct: 163 KSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW 222

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
           ++A  I   M K +    V T   L++   +     EAQ L+ + L+    PN  TY  L
Sbjct: 223 RQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSL 282

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C    L  A + ++ M  KG  P+VV +N ++ G  K  +  D +KLF+ M  +G 
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGL 342

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
             +  +Y  +I  +C+                 ++ +  D+   M   G  PD +T+  L
Sbjct: 343 VGDTFTYNTLIHGYCQVG---------------KLRVAKDIFSWMVSCGVTPDIITHCIL 387

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +  + +      A+  + +M RSG K   I  YN+++    +    E   +++  +   G
Sbjct: 388 LHGLCVNGEIGSAMVKFNDM-RSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEG 446

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             PD  +YT++I GL       EA +    M E G+
Sbjct: 447 VKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 20/281 (7%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +L ++T+L+  +CR   L  A  +  +M+  G+ P +V    +L G     +  DA  L 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CP 465
             M   G  PNV  Y  +I   CK                  ++I  +LL EME++G   
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNG---------------DVNIALELLNEMEKKGRLA 203

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D +TYN L+  +       +A RI ++M +    P + T+  ++ ++ + GN +  +++
Sbjct: 204 ADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQEL 263

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M++    P+  +Y  LI GL    R   A K  + M  KG    V+ YN       +
Sbjct: 264 YKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCK 323

Query: 586 AGRSYVLDELAQKMRFSG----KFEVSNVLARWAETTKNRV 622
           + R     +L Q+M   G     F  + ++  + +  K RV
Sbjct: 324 SRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRV 364



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 16/246 (6%)

Query: 281  TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            T+   +N F        A  +F+LM        V T N L+    +SK  ++   LF ++
Sbjct: 827  TYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 886

Query: 341  KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             H+    +  TY  L+ G+C+   L  A +V+N M+D G  PD+V +NI+L+ L   GK 
Sbjct: 887  THQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKI 946

Query: 400  SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
              A+ + E ++      ++ +Y I+I   C+ +               ++   + L + +
Sbjct: 947  EKALVMVEDLQKNQMDVDIITYNIIIQGMCRND---------------KVKEAWCLFRSL 991

Query: 460  EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              +G   D + Y  +I  +    +  EA ++   M   GF P+   Y+  ++ ++ + + 
Sbjct: 992  TRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETLRDHYTSLSA 1051

Query: 520  EMGRKV 525
            E+ + V
Sbjct: 1052 ELIKAV 1057



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 98/270 (36%), Gaps = 60/270 (22%)

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVR-------------------------------- 419
           G L   +  DA+ LF  M    P P+V                                 
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH 98

Query: 420 ---SYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
              S+TI+I  FC+                     +   +  L+ GF  R R+   + L+
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQ 515
             M + G  P+ + YN LI  +      + A+ +  EM + G     + TYN ++     
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           +G +    ++  +M +R   PD  ++T LI   + Q    EA +  ++ML+  +    + 
Sbjct: 219 SGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVT 278

Query: 576 YNKFAADLSRAGRSY----VLDELAQKMRF 601
           YN     L   GR Y      D +A K  F
Sbjct: 279 YNSLINGLCMHGRLYHAKKTFDLMASKGCF 308


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 177/373 (47%), Gaps = 19/373 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D   + +     AF F    G K G   N  T+N +++ L R  + +    +L
Sbjct: 19  VTYNTMIDGYCKLKRTDE-AFGFLRSMGLK-GLEPNLITFNMIINGLCRDGRLKETSEVL 76

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            EM  KG +  E T+   +N +       +A+ +   M +      V T   L+ ++ ++
Sbjct: 77  VEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKA 136

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                A   FD++  R   PN  TYT ++ G+ +   L EA RV NEM   GF P +V +
Sbjct: 137 GNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTY 196

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N ++ G   +G+  +AI L + M  KG  P+V SY+                +I+GF   
Sbjct: 197 NALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYST---------------IISGFARN 241

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           + +D  + +  EM  +   PD +TY++LI+ +  Q+   EA  +++EM+     P   TY
Sbjct: 242 QELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTY 301

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++ +Y + G+      + DEMI++G  PD  +Y VLI GL  Q RS EA + L ++  
Sbjct: 302 TTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFY 361

Query: 567 KGMKAPVLDYNKF 579
                  + YN  
Sbjct: 362 DDSIPSAVTYNTL 374



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 116/254 (45%), Gaps = 15/254 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PNL T+ +++ G CR   L E   V  EM  KG+ PD V +N ++ G  K G    A+ L
Sbjct: 51  PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVL 110

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              M   G SPNV +YT +I   CK             GN  R    +D   +M  RG  
Sbjct: 111 HAEMVRNGLSPNVVTYTSLINSMCKA------------GNLNRAMEFFD---QMHVRGLC 155

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  TY  +I     Q + DEA R+  EM RSGF P+I TYN ++  +   G  E    +
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGL 215

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M+ +G  PD  SY+ +I G         A++   EM+ K +    + Y+     L  
Sbjct: 216 LQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE 275

Query: 586 AGRSYVLDELAQKM 599
             R     ++ Q+M
Sbjct: 276 QRRLTEACDMFQEM 289



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 22/344 (6%)

Query: 268 LEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            +EM   G L ++ T+   ++ +   K   +A      M     +  + T N ++  L R
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 327 -SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
             +L + +++L +  +  + P+  TY  L+ G+C+  N  +A  +  EM+  G  P+VV 
Sbjct: 66  DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVT 125

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
           +  ++  + K G  + A++ F+ M  +G  PN R+YT +I  F +Q              
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMT 185

Query: 432 ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                 +   Y  LI G     RM+    LL++M  +G  PD ++Y+ +I      +  D
Sbjct: 186 RSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELD 245

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            A ++  EM+     P   TY+ +++   +         ++ EM+     PD+ +YT LI
Sbjct: 246 RAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLI 305

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
                +    +A    +EM++KG     + YN     L++  RS
Sbjct: 306 NAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARS 349



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 15/235 (6%)

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           R + EM   G  P+VV +N M++G  K+ +  +A      M  KG  PN+ ++ ++I   
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGL 63

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C+                 R+    ++L EM  +G  PD +TYN L+     +    +A+
Sbjct: 64  CRDG---------------RLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQAL 108

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            ++ EMVR+G  P + TY  ++ S  + GN     + +D+M  RG CP++ +YT +I G 
Sbjct: 109 VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGF 168

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             Q    EAY+ L EM   G    ++ YN         GR      L Q M   G
Sbjct: 169 AQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 149/308 (48%), Gaps = 21/308 (6%)

Query: 238 KPGFAHNSRTYNSMMS---ILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAK 293
           + GF  +  TYN++++   +LGR    E  + +L++M  KG+L  + ++   ++ FA  +
Sbjct: 186 RSGFIPSIVTYNALINGHCVLGR---MEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQ 242

Query: 294 ERKKAVAI-FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTY 351
           E  +A  +  E++ K      V T + L++ L   +   EA  +F + L  +  P+  TY
Sbjct: 243 ELDRAFQMKVEMIGKSVLPDAV-TYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTY 301

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           T L+  +C+  +L +A  + +EMI KGF PD V +N+++ GL K  +  +A +L   +  
Sbjct: 302 TTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFY 361

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
               P+  +Y  +I   C         L+ GF  +  MD    + + M  +   P+   Y
Sbjct: 362 DDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIY 421

Query: 472 NALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVW 526
           N +I    ++  + K    A ++YKEMV   F P   T   ++K+ F  G + E+   + 
Sbjct: 422 NVIIHGHCRIGNVLK----AYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIG 477

Query: 527 DEMIRRGC 534
           D  I R C
Sbjct: 478 D--ILRSC 483



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           MG + + EM R GC P+  +Y  +I G     R+ EA+ +L  M  KG++  ++ +N   
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 581 ADLSRAGR----SYVLDELAQK 598
             L R GR    S VL E+++K
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRK 82



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 35/152 (23%)

Query: 487 AVRIYKEMVRS-----------------------------------GFKPTIHTYNMIMK 511
            +R +KEM R+                                   G +P + T+NMI+ 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              + G  +   +V  EM R+G  PD+ +Y  L+ G   +    +A     EM+  G+  
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V+ Y      + +AG      E   +M   G
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRG 153


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 174/394 (44%), Gaps = 55/394 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFEL 304
           TYN++++   +A++      + E M + G    ++ T+ + ++ +  + E  + + + E 
Sbjct: 151 TYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEE 210

Query: 305 MNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M +   KA V   + L+    G   +    +L  + L+ + +PN+ TY+ L+ G  R   
Sbjct: 211 MEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGR 270

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
             EA  +  +M  +G +PDVVA+ ++ +GL K G+  DAIK+ ++M  KG  P   +Y +
Sbjct: 271 WREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNV 330

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM----- 478
           ++   CK++               RMD  + +++ M ++G  PD +TYN L+K +     
Sbjct: 331 VVNGLCKED---------------RMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGK 375

Query: 479 --------------KIQKMPD------------------EAVRIYKEMVRSGFKPTIHTY 506
                         K    PD                  +A RI+  MV  G +  I TY
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N +++ Y          K+W   +  G  P+  +Y+V+I GL        A     +M +
Sbjct: 436 NFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKD 495

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            G++  V+DYN     L R         L Q+MR
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQEMR 529



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 164/380 (43%), Gaps = 24/380 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY+ +M  LGR  ++     ML++M  +G+   +  + +  +          A+ + 
Sbjct: 254 NVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVL 313

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           +LM +   + G  T N ++  L +     +A  + + + K    P+  TY  LL G C  
Sbjct: 314 DLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGA 373

Query: 362 KNLMEAGRVWNEMIDKGF--KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
             + EA  +W  ++ + F  KPDV   N +++GL K G+  DA ++   M   G   N+ 
Sbjct: 374 GKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIV 433

Query: 420 SYTIMI---------------WKFCKQ-----NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y  +I               WK+  +     N+  Y+ +I G    + + +   L  +M
Sbjct: 434 TYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKM 493

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           ++ G  P  + YNAL+  +  +   ++A  +++EM        + ++N+I+    + G+ 
Sbjct: 494 KDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDV 553

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +  +++  EM      PD  ++++LI          EA    E+M+  G    V+ ++  
Sbjct: 554 KSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSL 613

Query: 580 AADLSRAGRSYVLDELAQKM 599
                  G +  +  L  +M
Sbjct: 614 LKGYGLKGETEKIISLLHQM 633



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 150/316 (47%), Gaps = 27/316 (8%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           L++NL +++       ++ K+      P  T+ + L   +    +   A  V + M  +G
Sbjct: 48  LIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRG 107

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
           F  +V   N++L+G  + G+   A+ LF  MK        R+Y  ++      +   Y  
Sbjct: 108 FGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMK--------RNYDCVV-----PDCVTYNT 154

Query: 439 LITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
           L+ GF   +R+     L + M++ G C P+ +TY+ LI          E + + +EM R 
Sbjct: 155 LVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMERE 214

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G K  +  Y+ ++ ++   G+ E GR+++DEM+RR   P+  +Y+ L+ GL    R  EA
Sbjct: 215 GLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREA 274

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDELAQKMRFSGKFEVSNVLAR 613
            + L++M  +G++  V+ Y   A  L + GR+     VLD + QK    G    + V+  
Sbjct: 275 SEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVV-- 332

Query: 614 WAETTKNRVYRKDRIE 629
                 N + ++DR++
Sbjct: 333 ------NGLCKEDRMD 342



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 155/350 (44%), Gaps = 28/350 (8%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           G++PG    + TYN +++ L +  + +    ++E M +KG      T+   +     A +
Sbjct: 320 GEEPG----TLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGK 375

Query: 295 RKKAVAIFELMNKYKFKAGVDTINC--LLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTY 351
             +A+ +++L+   KF    D   C  L++ L +  ++   A++    ++     N+ TY
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
             L+ G+   + L+EA ++W   ++ GF P+ + +++M+ GL K+   S A  LF  MK 
Sbjct: 436 NFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKD 495

Query: 412 KGPSPNVRSYTIMIWKFCKQNA--------------------AVYTCLITGFGNRRRMDI 451
            G  P V  Y  ++   C++++                      +  +I G      +  
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKS 555

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             +LL EM      PD +T++ LI       M DEA+ +Y++MV  G  P +  ++ ++K
Sbjct: 556 AKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLK 615

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            Y   G  E    +  +M  +    D    + ++  L    R+ +  K L
Sbjct: 616 GYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKIL 665


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 180/365 (49%), Gaps = 33/365 (9%)

Query: 217 VLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           V +  RH + P  AF FF W  +K GF+HN +TY  M+ ILGR +      + L  + ++
Sbjct: 88  VFQTLRHIKVPTKAFLFFNWIHEK-GFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKR 146

Query: 275 --GLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL---GRS 327
             G + +E   F   + ++  A   K++V +FE M       GV T N +L  L   GR+
Sbjct: 147 SNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRT 206

Query: 328 KLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            + KE   ++D++   +   P+  TY +L+ G+C+   + E    + EM      PDVV 
Sbjct: 207 NMAKE---VYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVT 263

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVM--KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           +N +++GL + GK   A  L   M  K K  SP+V +YT +I  +C+             
Sbjct: 264 YNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCR------------- 310

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PT 502
             ++ +D   D+L+EM  RG  P+ +TYN LIK +   +  D+   I ++M   G   P 
Sbjct: 311 --KQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPD 368

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             T+N ++ S+   GN +   KV++ M +     D  SY+VLI  L  +   G+A    +
Sbjct: 369 ACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFD 428

Query: 563 EMLEK 567
           E+ EK
Sbjct: 429 ELFEK 433



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 42/370 (11%)

Query: 236 GDKPGFAHNSRTYNSMMSIL---GRARQF-ETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291
           G  PG      T+NS++ +L   GR     E    ML+  G K      T+ I +  F  
Sbjct: 185 GVSPGVV----TFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKP--DTYTYNILIRGFCK 238

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNL 348
                +    F+ M  +     V T N L++ L R+   K A  L + +  +    +P++
Sbjct: 239 NSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDV 298

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TYT L+ G+CR + + EA  +  EM  +G KP++V +N +++GL +  K     ++ E 
Sbjct: 299 VTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQ 358

Query: 409 MKAKGPS-PNVRSYTIMIWKFC--------------------KQNAAVYTCLITGF---G 444
           MK  G S P+  ++  +I   C                      ++A Y+ LI      G
Sbjct: 359 MKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKG 418

Query: 445 NRRRMDIVYDLLKEME----ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +  + ++++D L E E      G  P   +Y  + + +       +A R+ +++++ G +
Sbjct: 419 DYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ 478

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
             + +Y +++  + + G+YE G  +   M+RR   PD + Y  LI G + +D+   A + 
Sbjct: 479 DPL-SYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKET 537

Query: 561 LEEMLEKGMK 570
           LE+ML+   K
Sbjct: 538 LEKMLKSSYK 547



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 22/291 (7%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           + + L   K+P +A L F+ +  + F+ N  TY ++L    R KNL    R +   I+K 
Sbjct: 88  VFQTLRHIKVPTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNL-NIARNFLYSIEKR 146

Query: 379 FKPDVVAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
              +V   +     L++     G   +++KLFE MK  G SP V ++          N+ 
Sbjct: 147 SNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTF----------NSV 196

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           +   L  G  N  +   VYD +  ++  G  PD  TYN LI+      M DE    +KEM
Sbjct: 197 LLVLLKRGRTNMAKE--VYDEM--LKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEM 252

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR--GCCPDDNSYTVLIGGLISQD 552
                 P + TYN ++    + G  ++   + + M ++     PD  +YT LI G   + 
Sbjct: 253 TSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQ 312

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              EA   LEEM  +G+K  ++ YN     L  A +   + E+ ++M+  G
Sbjct: 313 EVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDG 363



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/392 (19%), Positives = 155/392 (39%), Gaps = 58/392 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G   N  TYN+++  L  A++++ M  +LE+M   G  +    TF   +N+   A    +
Sbjct: 328 GLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDE 387

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT--------PNLT 349
           A  +FE M K +  A   + + L+  L +     +A++LFD+L  +          P   
Sbjct: 388 AFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAA 447

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           +Y  +    C      +A RV  +++ +G + D +++ I++ G  K G   +   L   M
Sbjct: 448 SYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-DPLSYQIVILGHCKEGSYENGYGLLVWM 506

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
             +   P++                +Y  LI GF  + +  +  + L++M +    P   
Sbjct: 507 LRRDFLPDI---------------DIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTS 551

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           T+++++  +  Q    E+  +   M+    +  I+     ++  F  G  +   K+ + +
Sbjct: 552 TWHSILNRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELI 611

Query: 530 IRRGCCP--------------------------------DDNSYTVLIGGLISQDRSGEA 557
            + G C                                 D     ++I  L   +++ EA
Sbjct: 612 YKNGFCVKMDEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNIVILDLCKLNKASEA 671

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           +    E+++KG+   ++  N   A L   GR+
Sbjct: 672 FSLCYELVDKGLHQDLICLNDLVAALEAGGRT 703


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 177/383 (46%), Gaps = 26/383 (6%)

Query: 197 NMEAVLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           N ++VLDE  + +S  LV +VL         +      + A+RFF W+G++  F H   +
Sbjct: 92  NSKSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNS 151

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y+ +M I     +++ M  +++EM + G   +  TF + + +   A   K+AV  F    
Sbjct: 152 YHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSK 211

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
            + ++    + N +L +L   K  K  + ++ + L+  F+P++ TY +LL    R+  + 
Sbjct: 212 TFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMD 271

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              R+++EM   GF PD   +NI+L  L K  K   A+     MK  G  P+V  YT   
Sbjct: 272 RFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTT-- 329

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        LI G      ++     L EM + GC PD + Y  +I    +    D
Sbjct: 330 -------------LIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELD 376

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A  +++EM   G  P + TYN +++     G +     +  EM  RGC P+   Y+ L+
Sbjct: 377 KAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLV 436

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
             L    +  EA K + EM++KG
Sbjct: 437 SYLRKAGKLSEARKVIREMVKKG 459


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 160/337 (47%), Gaps = 21/337 (6%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           K  L + ++   +   A +K   +A  +FE +        V     +++ L ++   ++ 
Sbjct: 103 KASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDG 162

Query: 334 QLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
              F+++      P  TTYTV++ G C+ + L +A +V+ +M+ KG  PD + +  +++G
Sbjct: 163 LKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 222

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------------------ 434
             K  K  +A KL +VM  KGP P   +Y  ++  FCK +                    
Sbjct: 223 FSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPG 282

Query: 435 --VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
             ++T L++ + ++ R +  Y +L EM  RGC PD + Y +LI L+       EA  ++ 
Sbjct: 283 LFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 342

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            M+  G  P   TY  I++++ + GN E   ++ + M + G  PD  +Y  L+ G +  +
Sbjct: 343 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 402

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           R  +A+   + M+  G+K   + +N     L + G++
Sbjct: 403 RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 439



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 151/378 (39%), Gaps = 52/378 (13%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ ++   ++  A+  +  +A   F  M     +  V     L+    ++  P+    L 
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLL 65

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRV--------------------------------KNLM 365
           ++   RF P++  YT ++ G+C+                                 K + 
Sbjct: 66  NQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRID 125

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI-- 423
           EA  ++ E+   G  P+VVA+  +++GLLK G+  D +K FE M      P   +YT+  
Sbjct: 126 EACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVI 185

Query: 424 ------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                             M+ K C  +   YT LI GF    +MD    LL  M  +G  
Sbjct: 186 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 245

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  +TY +++       M +EA  +  +M   G +P +  +  ++  Y   G  E   +V
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 305

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             EM  RGC PD   YT LI  L S  R  EA    + M+EKG     L Y     + S+
Sbjct: 306 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 365

Query: 586 AGRSYVLDELAQKMRFSG 603
            G      E+ + M  SG
Sbjct: 366 IGNVEAAGEILELMAKSG 383



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 190/451 (42%), Gaps = 70/451 (15%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFF 232
           K  AD + I+  C++ +EL +                                       
Sbjct: 116 KGLADSKRIDEACELFEELKT--------------------------------------- 136

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAA 291
             AG  P    N   Y +++  L +A + E  +   EEM G   + +  T+ + ++    
Sbjct: 137 --AGCSP----NVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCK 190

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTT 350
           A+    A  +FE M +        T   L++   ++    EA+ L D  L     P   T
Sbjct: 191 AQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT 250

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y  ++ G+C++  + EA  V  +M ++G +P +     +L   L  G+  +A ++   M 
Sbjct: 251 YGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMT 310

Query: 411 AKGPSPNVRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMD 450
           A+G +P+V  YT                     MI K C  +A  Y  +I  F     ++
Sbjct: 311 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 370

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
              ++L+ M + G  PD   YN+L+   +K++++ D+A  +Y  MV SG KP   T+N++
Sbjct: 371 AAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV-DQAFGVYDRMVASGIKPNAVTFNVL 429

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           M   F+ G  +    ++ EM+ +   P    SYT+LI GL    R  EA+   +EM+++G
Sbjct: 430 MHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRG 489

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +      Y      L++AGR     +L + M
Sbjct: 490 IIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 20/276 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P + +Y  ++ G   +  + EA + +N MID G +PDV+A   ++ G  K G+     KL
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ-----------------NAAVYTCLITGFGNRRR 448
                 K   P+V  YT +I  +CK                  +   YT +I G  + +R
Sbjct: 65  LN-QALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKR 123

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +D   +L +E++  GC P+ + Y A+I  L+K  ++ D  ++ ++EM  S   PT  TY 
Sbjct: 124 IDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIED-GLKNFEEMSGSSCVPTRTTYT 182

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++    +        KV+++M+++GC PD  +YT LI G     +  EA K L+ ML K
Sbjct: 183 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 242

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G +   + Y        +        E+  +MR  G
Sbjct: 243 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG 278



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 25/386 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ TY +++    +A + +    +L+ M  KG   +  T+   ++ F       +A
Sbjct: 208 GCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA 267

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +   M +   + G+     LL   L + +  +  Q+L +       P++  YT L+  
Sbjct: 268 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 327

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
                 + EA  V++ MI+KG  PD + +  +++   KIG    A ++ E+M   G  P+
Sbjct: 328 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPD 387

Query: 418 VRSYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y                      M+    K NA  +  L+ G     + D  + L K
Sbjct: 388 CFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFK 447

Query: 458 EM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           EM E+   PP  ++Y  LI  +       EA   ++EM+  G  P  HTY  ++ S  + 
Sbjct: 448 EMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKA 507

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G     +K+ ++M++ G  PD  +Y+ LI GLI       A+   +EM+++G     + Y
Sbjct: 508 GRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTY 567

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFS 602
                    AGR+  LD  A K  FS
Sbjct: 568 KVLRRGFRAAGRA--LDLEAVKQHFS 591



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           GC P   SY  +I GL S D+  EAYK+   M++ G +  V+ +        +AG+  V
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 195/400 (48%), Gaps = 37/400 (9%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++  L +++ + T++ + ++M  +G+  ++    I +N+F        A ++   + 
Sbjct: 65  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKIL 124

Query: 307 KYKFKAGVDTINCLLENL---GR--------SKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
           K  +K    T+N L++ L   G+         KL K+A  LF+K +     P++ T+T+L
Sbjct: 125 KMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKL-KDAVDLFNKMILENINPDVYTFTIL 183

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+   + EA  V   M+ +G KP VV +N +++G   + + + A  +F  M   G 
Sbjct: 184 VDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGV 243

Query: 415 SPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYD 454
           SP+++SY+I+I  FCK                     N   Y+ LI G     ++     
Sbjct: 244 SPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALK 303

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L+ EM +RG PP+ +TY++++  +      D A+ +  +M   G +P ++TY +++K   
Sbjct: 304 LVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLC 363

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           Q+G  E  RKV+++++ +G   +  +YTV+I G   +    EA   L +M + G      
Sbjct: 364 QSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAK 423

Query: 575 DYNKFAADLSRAGRSYVLDELAQKM---RFSGKFEVSNVL 611
            Y      L +   + + ++L  +M    F G+  ++N L
Sbjct: 424 TYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDL 463



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 122/277 (44%), Gaps = 12/277 (4%)

Query: 332 EAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +A  LF++L +   TP    +  +LG   + K+      +  +M  +G KP++V  NI++
Sbjct: 45  DAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 104

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT--CLITGFGNRRR 448
               ++G    A  +   +   G  PN  +   +I   C  N  ++   C++       +
Sbjct: 105 NSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLC-LNGKIHDKHCIV------GK 157

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +    DL  +M      PD  T+  L+     +    EA  +   M+  G KP + TYN 
Sbjct: 158 LKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNS 217

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +M  YF        + +++ M + G  PD  SY++LI G        EA + L+EM  K 
Sbjct: 218 LMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ 277

Query: 569 MKAPVLDYNKFAADLSRAGR-SYVLDELAQKMRFSGK 604
           +   V+ Y+     L ++G+ SY L +L  +M   G+
Sbjct: 278 IIPNVVTYSSLIDGLCKSGKISYAL-KLVDEMHDRGQ 313


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 23/394 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AF       DK G   +  TYN++++ L +  ++     +L EM   GL     T+   +
Sbjct: 172 AFEIMNSMADK-GLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLL 230

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFT 345
                     +A  IF  M +      + + + L+    R++   +A + F D  K    
Sbjct: 231 VESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLV 290

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+   YTVL+ G+CR  N++EA ++ +EM+++G   DV+A+N +L GL K    +DA KL
Sbjct: 291 PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKL 350

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGN 445
           F+ M  +G  P+  ++T +I   C                    K +   Y  LI GF  
Sbjct: 351 FDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCK 410

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              M+   +L   M  R   P+ +TY  LI          EA R++  M+  G KPT+ T
Sbjct: 411 VGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVT 470

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            N ++K Y ++G+     +    MI +G  PD  SY  LI G + +D   +A+ ++ +M 
Sbjct: 471 CNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKME 530

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           ++G+   ++ YN       R GR    + + +KM
Sbjct: 531 KEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKM 564



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 177/360 (49%), Gaps = 29/360 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERK 296
           + G   +  +++S++++  R R  +  +    +M + GL+     + + M+ +       
Sbjct: 251 RQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNML 310

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL 355
           +A+ I + M +      V   N +L  L + K+  +A  LFD++  R   P+  T+T L+
Sbjct: 311 EALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLI 370

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+  N+ +A  ++  M  +  KPD+VA+N +++G  K+G+   A +L++ M ++   
Sbjct: 371 HGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIF 430

Query: 416 PNVRSYTIMIWKFCKQN------------------AAVYTC--LITGF---GNRRRMDIV 452
           PN  +Y I+I  +C                       + TC  +I G+   G+  + D  
Sbjct: 431 PNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKAD-- 488

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            + L  M  +G  PD ++YN LI     +   D+A     +M + G  P I TYN++M  
Sbjct: 489 -EFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNG 547

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + + G  +    V  +MI +G  PD ++YT LI G ++QD   EA+++ +EML++G  AP
Sbjct: 548 FCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGF-AP 606



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 167/388 (43%), Gaps = 22/388 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G   N  T N M++ L +  +F+ + S L EM   G+ + M T+   + A+      +
Sbjct: 111 RSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLE 170

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  I   M     K  + T N ++  L  + +  +   +L + L    +P+ TTY  LL
Sbjct: 171 EAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLL 230

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR  N  EA  ++ EM+ +G  PD+V+ + ++    +      A+  F  MK  G  
Sbjct: 231 VESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLV 290

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+   YT+++  +C+                     +   Y  ++ G    + +     L
Sbjct: 291 PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKL 350

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM ERG  PD  T+  LI          +A+ ++  M +   KP I  YN ++  + +
Sbjct: 351 FDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCK 410

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  E   ++WD MI R   P+  +Y +LI    S     EA++  + M+EKG+K  ++ 
Sbjct: 411 VGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVT 470

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
            N       R+G S   DE   +M   G
Sbjct: 471 CNTVIKGYCRSGDSSKADEFLGRMIAKG 498



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN++++ L + +       + +EM E+G L    TF   ++         KA+++F  M
Sbjct: 330 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 389

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            +   K  +   N L++   +    ++A  L+D +  R   PN  TY +L+  +C V ++
Sbjct: 390 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 449

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA R+W+ MI+KG KP +V  N +++G  + G  S A +    M AKG +P+  SY   
Sbjct: 450 SEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYN-- 507

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                         LI GF     MD  +  + +ME+ G  PD +TYN ++     Q   
Sbjct: 508 -------------TLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRM 554

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            EA  + ++M+  G  P   TY  ++  +    N     +  DEM++RG  PDD
Sbjct: 555 QEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDD 608



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 16/241 (6%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           T NL  + +L+  + + + L E    +  +  KG+   + A N +L GL+KI     A +
Sbjct: 46  TNNLV-FDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWE 104

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +   +   G   NV +  IM+   CK                 + D V   L EME  G 
Sbjct: 105 VHREVVRSGIELNVYTLNIMVNALCKDG---------------KFDDVKSFLSEMEGNGI 149

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D +TYN LI     + + +EA  I   M   G KP++ TYN I+    + G Y   + 
Sbjct: 150 YADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKG 209

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +  EM+  G  PD  +Y  L+     +D   EA +   EML +G+   ++ ++   A  S
Sbjct: 210 ILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFS 269

Query: 585 R 585
           R
Sbjct: 270 R 270



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           ++   +N F       KA      M K      + T N ++    R    +EA+L+  K+
Sbjct: 505 SYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKM 564

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
             +   P+ +TYT L+ G     NL EA R  +EM+ +GF PD V
Sbjct: 565 IEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 213/470 (45%), Gaps = 32/470 (6%)

Query: 161 NNSESEITSVSYKSTADPREIERVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLE 219
           +N  S I  V ++++  P ++  +  ++ D        +E  LD  GI  S +L+  V +
Sbjct: 70  SNPNSAI-DVKFEASYSPNDLSTISSILSDRSVRPGAALEDALDRTGIVPSSSLLEAVFD 128

Query: 220 RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM---GEKG- 275
            F  + +     F WA  K GF  ++  +N ++++L ++R+F++  S++      GE+  
Sbjct: 129 HFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDSAWSLITSRLRGGEESF 188

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT---INCLLENLGRSKLPKE 332
           L+S+E F I +  +A A   + A+  +E     +  +G  +      LL++L +    + 
Sbjct: 189 LVSVEVFVILIRRYARAGMVQPAIRTYEFACNLETISGTGSEGLFEILLDSLCKEGHVRV 248

Query: 333 AQLLFDK---LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           A   F++   +   F P++  Y +L+ GW R + L  A R+W EM      P VV +  +
Sbjct: 249 ASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTL 308

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------------WKFCKQ 431
           +EG  ++     AI+L + M+ +G  PN   Y  ++                  +   +Q
Sbjct: 309 IEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQ 368

Query: 432 NAAV--YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
              +  Y  L+ G+     +     +LK M  RG  P   TYN   +        +E++ 
Sbjct: 369 GPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMS 428

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +Y +M+ SG+ P   TY++++K   +     +  +V +EM  RG   D  + T+L+  L 
Sbjct: 429 LYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLC 488

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
              +  EA+   E M+ +G+    L + +   +  + G + +  +L + M
Sbjct: 489 KMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMM 538


>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
 gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 192/426 (45%), Gaps = 33/426 (7%)

Query: 173 KSTADPREIERVCKVIDELFSL--DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFR 230
           ++   P+EI    K + ++ S      + A L    I  + ++V DVL         A  
Sbjct: 5   QTNPKPKEISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVE 64

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290
           FF WAG      H++ ++N ++ +LG+  +FE M   +  M  +G LS+  F     ++ 
Sbjct: 65  FFRWAGLTR--KHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYC 122

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENL----GRSKLPKEAQLLFDKLKHRFTP 346
           +     +A+  FE+M++Y     V  +N LL  +    G + L  E    F+K+K + TP
Sbjct: 123 SVGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALE---FFEKIKVKITP 179

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP-DVVAHNIMLEGLLKIGKRSDAIK 404
           +  T+ +LL GW R  N+ +A   + EM+ + G+ P ++VA+N +L  L++  +  +AIK
Sbjct: 180 DGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIK 239

Query: 405 LFEVMKAKGPSPNVR---------------SYTIMIWKFC-----KQNAAVYTCLITGFG 444
              VMK KG  P ++               ++ I +W          N  +Y  +I    
Sbjct: 240 FLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILC 299

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
           N    D  +  L EM   G   D  TYN + + +   K   EA + + EM+++   P   
Sbjct: 300 NAGDADNAFRFLDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPS 359

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                +   F   + EM  ++W  MI     P D S   L+ GL +  R  +  ++ E+M
Sbjct: 360 NCAAAIAMCFDGDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDM 419

Query: 565 LEKGMK 570
           L+  +K
Sbjct: 420 LDMKIK 425



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           +G+ ++AI  FEVM   G  P+V +   ++   C +  +  T L   F  + ++ I    
Sbjct: 124 VGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICCEGGS--TTLALEFFEKIKVKIT--- 178

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV-RSGFKP-TIHTYNMIMKSY 513
                     PDG T+  L++  + +    +A   + EMV R G+ P  +  YN ++ + 
Sbjct: 179 ----------PDGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTL 228

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +    E   K    M  +GC P    ++  +  L+ Q+ S  A    + ML+ G    +
Sbjct: 229 VRGMEVEEAIKFLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNL 288

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           + YN     L  AG +        +M F G F
Sbjct: 289 MMYNTIIGILCNAGDADNAFRFLDEMVFYGVF 320


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 181/396 (45%), Gaps = 30/396 (7%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAK 293
            G KP       +Y ++++ L   ++F+++ S++ ++ E G+     F    +NAF+ + 
Sbjct: 42  GGHKPSLI----SYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESG 97

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTY 351
             + A+  F  M +   K    T N L++  G +  P+E+  L + +       PNL TY
Sbjct: 98  NMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTY 157

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            VL+  WC  K + EA  V  +MI  G +PDVV +N +     + G    A  +   M+ 
Sbjct: 158 NVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQN 217

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
            G  PN R+  I++  +CK+                    N  ++  LI GF      D 
Sbjct: 218 NGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDG 277

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V ++L  MEE G  PD +T++ ++         ++   I+ +MV++G +P  H Y+++ K
Sbjct: 278 VDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAK 337

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y +    E   ++   MI+ G  P+   +T +I G  S  +   A +  ++M ++G+  
Sbjct: 338 GYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISP 397

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
            +  +       + A + +  +E+ Q M    +FEV
Sbjct: 398 NLKTFETLIWGFAEARQPWKAEEILQIMT---EFEV 430



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 172/388 (44%), Gaps = 29/388 (7%)

Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHA--RRPAFRFFCWAGDKPGFAH 243
           K  D ++S+   +E    E G+N        V+  F  +     A   F W   + G   
Sbjct: 62  KRFDSIYSIISQVE----ENGMNPDSIFFNAVINAFSESGNMESAMETF-WKMQENGMKP 116

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAI 301
            + TYN+++   G A + E  V +LE M ++G +  ++ T+ + + A+   K   +A  +
Sbjct: 117 TTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNV 176

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCR 360
              M     +  V T N +     +     +A+ ++ +   +   PN  T  +++ G+C+
Sbjct: 177 VYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCK 236

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              + EA R    M + G  P++V  N +++G + I  R    ++  +M+  G  P+V +
Sbjct: 237 EGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVIT 296

Query: 421 YTIMI--WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
           ++ ++  W               GF     M+   ++  +M + G  PD   Y+ L K  
Sbjct: 297 FSTIMNAWS------------TAGF-----MEKCREIFDDMVKAGIEPDAHAYSILAKGY 339

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              + P++A  +   M++SGF+P +  +  ++  +   G  +   +V+D+M +RG  P+ 
Sbjct: 340 VRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNL 399

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            ++  LI G     +  +A + L+ M E
Sbjct: 400 KTFETLIWGFAEARQPWKAEEILQIMTE 427



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 21/270 (7%)

Query: 330 PKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           P+EA+ +F  L +    P+L +YT LL      K       + +++ + G  PD +  N 
Sbjct: 29  PQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNA 88

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           ++    + G    A++ F  M+  G  P                 + Y  LI G+G   +
Sbjct: 89  VINAFSESGNMESAMETFWKMQENGMKPTT---------------STYNTLIKGYGIAGK 133

Query: 449 MDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            +    LL+ M + G   P+  TYN L++    +K   EA  +  +M+ SG +P + TYN
Sbjct: 134 PEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYN 193

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            I  +Y Q G  +    V  EM   G  P++ +  +++ G   + R  EA ++   M E 
Sbjct: 194 TIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKEL 253

Query: 568 GMKAPVLDYNK----FAADLSRAGRSYVLD 593
           G+   ++ +N     F A + R G   VL+
Sbjct: 254 GIHPNLVIFNSLIKGFVAIMDRDGVDEVLN 283



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P EA  I+  ++  G KP++ +Y  ++ +      ++    +  ++   G  PD   +  
Sbjct: 29  PQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNA 88

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDELAQKM 599
           +I           A +   +M E GMK     YN        AG+      +L+ ++Q+ 
Sbjct: 89  VINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEG 148

Query: 600 RFSGKFEVSNVLARWAETTKNRV 622
                    NVL R A   K R+
Sbjct: 149 NVKPNLRTYNVLVR-AWCNKKRI 170


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 174/397 (43%), Gaps = 61/397 (15%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY S++  L + ++ E  +  L +M  KG    + T+   ++A        +A    E M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--- 362
                   V T   L++ L +     EA  L  K++ +  P   TY  L+ G C+ +   
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 363 ---NLME-----------------------------AGRVWNEMIDKGFKPDVVAHNIML 390
              +L+E                             A RV+ +++ +GF+PDVV ++ ++
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 391 EGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           +GL K G+  +AI LF  ++K+    PN  +Y  +I  FC+                   
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             +   YT L+ GF    R+D  YDLL +M  +G  PD +T+ +L+  +  +    +AV 
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK-VWDEMIRRGCCPDDNSYTVLIGGL 548
           I  EM R    PT++TYN I+  Y +    E  RK + +EM    C P+  S+ ++I GL
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGL 369

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
              +RS EA + +EE   +     V+ Y      L R
Sbjct: 370 CKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCR 406



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 20/264 (7%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           + +  TYT L+ G C+VK L +A     +M+ KGF PDV  +  ++  L    +  +A K
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCK-------------------QNAAVYTCLITGFGN 445
             E M  +  +PNV +YT++I   CK                     A  Y  LI+G   
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCK 127

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             R    YDLL+EM   GC PD  TY  LI      K  D+A+R+++++V  GF+P + T
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           Y+ ++    + G  +    ++  MI+ G C P+  +Y  LI G     +  EA   LE M
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR 588
            E G    V+ Y        +  R
Sbjct: 248 AETGSSPDVVTYTTLMNGFCKLAR 271



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 36/381 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS++S L +A +      +LEEM   G +  + T+   +  F  +K+   A+ +FE +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKN 363
               F+  V T +CL++ L +    KEA  LF ++       PN  TY  L+ G+CR+  
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + EA  +   M + G  PDVV +  ++ G  K+ +  DA  L   M  KG +P+V ++T 
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 424 MIWKFCKQN------------------AAVYT--CLITGFGNRRRMDIVYDLLKEMEERG 463
           ++   C++N                    VYT   ++ G+    +++     +  +EE  
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMD 354

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           CPP+ +++N +I+ L K+ +   EA+ + +E  R    P +  Y  ++    +    +  
Sbjct: 355 CPPNVVSFNIMIRGLCKVNR-SSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEA 413

Query: 523 RKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            +V+ +M+   GC P+  +Y+ LI GL +      A  Y    +EKG    +  YN    
Sbjct: 414 CRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGY----IEKGCVPNIGTYNLLID 469

Query: 582 DLSRAGRS----YVLDELAQK 598
              +A R      +LD++ Q+
Sbjct: 470 AFRKANRDEDARELLDDMVQR 490



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 22/292 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TYNS++S   R  + +  +++LE M E G    + T+   MN F        A  + 
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
             M +      V T   L++ L R ++L     +L +  +   +P + TY  +L G+CR 
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRA 339

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L EA +   E +D    P+VV+ NIM+ GL K+ + S+A++L E  + +  +P+V  Y
Sbjct: 340 NQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           T +I   C++      C +      R+M         +EE GC P+ +TY+ LI  +   
Sbjct: 398 TTVIDGLCREKKVDEACRVY-----RKM---------LEEPGCLPNSITYSTLITGLCNA 443

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            M D A    +  +  G  P I TYN+++ ++ +    E  R++ D+M++RG
Sbjct: 444 GMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 16/222 (7%)

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           D V +  +++GL K+ +   A+     M +KG  P+V +YT +I   C +N         
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN--------- 60

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                 R+      L+EM  R   P+ +TY  LI  +      DEAV +  +M R    P
Sbjct: 61  ------RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVP 113

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           T  TYN ++    +         + +EM+  GC PD  +YT LI G     +S +A +  
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 173

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           E+++ +G +  V+ Y+     L + GR     +L  +M  SG
Sbjct: 174 EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C  +   YT LI G    +R++     L +M  +G  PD  TY A+I  + ++    EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +  +EM      P + TY +++    + G  +    +  +M R+ C P   +Y  LI GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGL 125

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              +R+ EAY  LEEM+  G    +  Y        ++ +S
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 166



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           C  D +TY +LI+ L K++++ ++A+    +MV  GF P ++TY  ++ +          
Sbjct: 7   CSADFVTYTSLIQGLCKVKRL-EQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           RK  +EM  R   P+  +YTVLI GL    R  EA   L +M +K +   V  YN   + 
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNSLISG 124

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L +A R+    +L ++M +SG
Sbjct: 125 LCKAERASEAYDLLEEMVYSG 145


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 167/347 (48%), Gaps = 27/347 (7%)

Query: 267 MLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++EEM  +G+ +   T+   ++     +   +AVA+ E M +      V T N ++    
Sbjct: 96  LVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFC 155

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           R++   EA    +++      P++ TYT L+GG+C+ +++     +  E+  +GF PD+V
Sbjct: 156 RARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIV 215

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
            ++ +++GL K G+  DA+ +FE M     +P   +Y  +I  +C+              
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIFEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKM 272

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  +   YT L++ F    R+D  Y+L ++M      PD +T+ +L+  +  +   
Sbjct: 273 VDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRM 332

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           ++A+ + +E+ R G  PTI+TYN ++  Y +        ++  +   RG  P+  +Y +L
Sbjct: 333 EDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNIL 392

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAP--VLDYNKFAADLSRAGRS 589
           + G     R+ +A +YL+++  +G   P  V  Y      L R GR+
Sbjct: 393 VAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRT 439



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 183/385 (47%), Gaps = 25/385 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A    TYNS+++   RAR+ +     +E+M  +G    + T+   +  F  +++  + 
Sbjct: 139 GCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRG 198

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + +   + +  F   + T + +++ L ++   ++A  +F+++     P   TY  L+GG+
Sbjct: 199 LELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGY 256

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR  ++ EA R+  +M+D    PDVV +  ++    K+G+  DA +LF+ M A   SP+V
Sbjct: 257 CRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDV 316

Query: 419 RSYTIMIWKFCKQN------------------AAVYT--CLITGFGNRRRMDIVYDLLKE 458
            ++T ++   C +                     +YT  C++ G+    ++    +L+ +
Sbjct: 317 VTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVAD 376

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGFKPT-IHTYNMIMKSYFQT 516
              RG  P+ +TYN L+         D+A++   ++    G  PT +  Y +I+ +  + 
Sbjct: 377 FRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRD 436

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +   + ++EMI+RG  P   ++  ++  L    +  +A++ LEEM++ G        
Sbjct: 437 GRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTC 496

Query: 577 NKFAADLSRAGRSYVLDELAQKMRF 601
           +   +   RAG     DELA ++R 
Sbjct: 497 DAVVSAYCRAGMIQKADELASELRL 521



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 168/377 (44%), Gaps = 24/377 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +N ++  L RA +    + +  +M +       T+   ++  + A+  + AV + + M  
Sbjct: 8   HNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVS 67

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLME 366
            +      T+  ++++L       +A+ L +++ HR    N  TY+ L+ G C+ + L E
Sbjct: 68  ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDE 127

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  +   M ++G  P VV +N ++ G  +  +  +A    E M A+G  P++ +YT +I 
Sbjct: 128 AVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIG 187

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            FCK                     +   Y+ +I G     R+    D+ +EM    C P
Sbjct: 188 GFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAP 244

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
             +TYN+LI         DEA+R+  +MV     P + TY  +M ++ + G  +   +++
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            +M+     PD  ++T L+ GL  + R  +A + LEE+  +G    +  YN       +A
Sbjct: 305 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 587 GRSYVLDELAQKMRFSG 603
            +    +EL    R  G
Sbjct: 365 NQVRKAEELVADFRSRG 381



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 18/244 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P    + V++GG CR   L  A  V+ +M D    PD + +  ++ GL K  +  DA+++
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M +    P+  + T+++   C  +               R+D   +L++EM  RG  
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGD---------------RVDDARELVEEMLHRGMA 106

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            + +TY+AL+  L K +++ DEAV + + M   G  PT+ TYN I+  + +    +    
Sbjct: 107 ANAITYSALVDGLCKCERL-DEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHG 165

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
             ++M+  GC PD  +YT LIGG       G   + L E+  +G    ++ Y+     L 
Sbjct: 166 FMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLC 225

Query: 585 RAGR 588
           +AGR
Sbjct: 226 KAGR 229


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 173/381 (45%), Gaps = 26/381 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M+++L   G+ ++ +  +  +E +G K   ++ T+   ++      + ++A  IF+
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKP--NVVTYNTIIHGHCLRGKFQRARVIFQ 275

Query: 304 LMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
            M     +    T N  +  L +  +L + + L+   L+    PN  TY  L+ G+C   
Sbjct: 276 TMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKG 335

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L +A    +EMI KG    +V +N+ +  L   G+  DA  + + M+ KG  P+  ++ 
Sbjct: 336 DLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHN 395

Query: 423 IMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  +C+   A                     YT LI   G R RM     L  ++++ 
Sbjct: 396 ILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQE 455

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NALI         D A ++ KEM      P   TYN +M+ Y + G  E  
Sbjct: 456 GLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEA 515

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R++ DEM RRG  PD  SY  LI G   +    +A++  +EM+  G    +L YN     
Sbjct: 516 RQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQG 575

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L +       +EL ++M   G
Sbjct: 576 LCKNQEGEHAEELLKEMVSKG 596



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 162/355 (45%), Gaps = 27/355 (7%)

Query: 220 RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-S 278
           +F+ AR      F    DK G   +  TYNS +S L +  + E    ++ +M E GL+ +
Sbjct: 266 KFQRARV----IFQTMKDK-GLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPN 320

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
             T+   ++ +    +  KA A  + M      A + T N  +  L       +A  +  
Sbjct: 321 AVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIK 380

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           +++ +   P+  T+ +L+ G+CR  +   A  + +EM+ KG +P +V +  ++  L K  
Sbjct: 381 EMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRN 440

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYT 437
           +  +A  LF  ++ +G  P++  +  +I   C                      +   Y 
Sbjct: 441 RMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYN 500

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+ G+    +++    LL EM+ RG  PD ++YN LI     +    +A R+  EM+ +
Sbjct: 501 TLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTT 560

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           GF PTI TYN +++   +    E   ++  EM+ +G  PDD++Y  +I  + + D
Sbjct: 561 GFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVD 615



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 21/317 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F + + A+   K+  +A+  F L+ +  F   ++T N +L    +    + A +L+ ++ 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           +     +L T+ +++   C+   L +A      M   G KP+VV +N ++ G    GK  
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQ 268

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLI 440
            A  +F+ MK KG  P+  +Y   I   CK+                    NA  Y  LI
Sbjct: 269 RARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALI 328

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G+ N+  +D  Y    EM  +G     +TYN  I  + ++    +A  + KEM   G  
Sbjct: 329 DGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMM 388

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   T+N+++  Y + G+ +    + DEM+ +G  P   +YT LI  L  ++R  EA   
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADAL 448

Query: 561 LEEMLEKGMKAPVLDYN 577
             ++ ++G+   ++ +N
Sbjct: 449 FSKIQQEGLLPDIIVFN 465



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 20/276 (7%)

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           K P EA   F  +K + F PN+ T   +L  + ++     A  ++ EM     +  +   
Sbjct: 160 KKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTF 219

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           NIM+  L K GK   A +    M+  G  PNV +Y  +I   C +            G  
Sbjct: 220 NIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR------------GKF 267

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           +R  +++   + M+++G  PD  TYN+ I  +  +   +EA  +  +M+  G  P   TY
Sbjct: 268 QRARVIF---QTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY 324

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N ++  Y   G+ +      DEMI +G      +Y + I  L  + R G+A   ++EM E
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384

Query: 567 KGMKAPVLDYNKFAADLSRAG---RSY-VLDELAQK 598
           KGM    + +N       R G   R++ +LDE+  K
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGK 420



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 69/154 (44%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  L+  +   ++ +   +    ++E+G  P+  T N ++ L         A  +Y EM
Sbjct: 148 IFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEM 207

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            R   + +++T+N+++    + G  +  ++    M   G  P+  +Y  +I G   + + 
Sbjct: 208 FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKF 267

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             A    + M +KG++     YN F + L + GR
Sbjct: 268 QRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGR 301



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 58/126 (46%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++D L    +R      L ++ L++     K P+EA+  +  +   GF P I T N ++ 
Sbjct: 130 IFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLS 189

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + +    +M   ++ EM R        ++ ++I  L  + +  +A +++  M   G+K 
Sbjct: 190 LFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKP 249

Query: 572 PVLDYN 577
            V+ YN
Sbjct: 250 NVVTYN 255


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 178/383 (46%), Gaps = 27/383 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           AF       D  G   N+  YN ++++L    + + + S   EM  +G+   + TF   +
Sbjct: 144 AFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVI 203

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT- 345
           +A   A++ + AV + E M+         T   L+E         EA L   +LK R + 
Sbjct: 204 DALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEG-SIEAAL---RLKARMSE 259

Query: 346 ----PNLTTYTVLLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
               P   T  VL+ G+C++  + +A G +  E+ D GF+PD V  +  + GL + G   
Sbjct: 260 MGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIAD-GFEPDRVTFSTFVNGLCQNGHVD 318

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            A+K+  +M  +G  P+V +Y+ +I   C               N   ++    ++ +M 
Sbjct: 319 HALKVLGLMLQEGCEPDVYTYSTVINCLC---------------NNGELEEAKGIVNQMV 363

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           + GC PD  T+N LI  +  +   +EA+ + +E+   G  P ++T+N+++ +  + G+  
Sbjct: 364 DSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPH 423

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           +  ++++EM   GC PD+ +Y +LI  L S  +  +A   L+EM   G     + YN   
Sbjct: 424 LAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTII 483

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
             L +  R    +E+  +M  +G
Sbjct: 484 DGLCKRRRIEEAEEVFDQMDVTG 506



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 139/330 (42%), Gaps = 27/330 (8%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT----INCLLENLGRSKLPKEAQLL 336
           TF   +N          A+ +  LM +   +  V T    INCL  N    +L +   ++
Sbjct: 303 TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNN---GELEEAKGIV 359

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
              +     P+ TT+  L+   C    L EA  +  E+  KG  P+V   NI++  L K+
Sbjct: 360 NQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKV 419

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVY 436
           G    A++LFE MK+ G +P+  +Y I+I   C                     Q+   Y
Sbjct: 420 GDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTY 479

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             +I G   RRR++   ++  +M+  G   + +T+N LI  +   +  D+A  +  +M+ 
Sbjct: 480 NTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMIS 539

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P   TYN I+  Y + GN      +   M   G   D  +Y  LI GL    R+  
Sbjct: 540 EGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQA 599

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           A K L  M  KGMK     YN     L R 
Sbjct: 600 ALKLLRGMRMKGMKPTPKAYNPVIQSLFRG 629



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 156/354 (44%), Gaps = 27/354 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ T+N+++  L    Q E  + +  E+  KGL  ++ TF I +NA     +   A
Sbjct: 366 GCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLA 425

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           V +FE M          T N L++NL  S KL K   LL +        +  TY  ++ G
Sbjct: 426 VRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ + + EA  V+++M   G   + +  N +++GL    +  DA +L + M ++G  PN
Sbjct: 486 LCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPN 545

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  ++  +CKQ                    +   Y  LI G    RR      LL+
Sbjct: 546 NVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLR 605

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M  +G  P    YN +I+ +       +A+ +++EM   G  P   TY ++ +   + G
Sbjct: 606 GMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGG 665

Query: 518 NYEMGRKVWD---EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
                ++ +D   EM   G  P+ +S+ +L  GL++        + +E ++EK 
Sbjct: 666 GPI--KEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIVEKA 717



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 166/409 (40%), Gaps = 64/409 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  T+++ ++ L +    +  + +L  M ++G    + T+   +N      E ++A
Sbjct: 296 GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEA 355

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M          T N L+  L      +EA  L  +L  +  +PN+ T+ +L+  
Sbjct: 356 KGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINA 415

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +   A R++ EM   G  PD V +NI+++ L   GK + A+ L + M+  G   +
Sbjct: 416 LCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQS 475

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+                    NA  +  LI G  N  R+D   +L+ 
Sbjct: 476 TVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVD 535

Query: 458 EMEERGCPPDGLTYNALI----KLMKIQKMPD---------------------------- 485
           +M   G  P+ +TYN+++    K   I K  D                            
Sbjct: 536 QMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKAR 595

Query: 486 ---EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A+++ + M   G KPT   YN +++S F+  N      ++ EM   G  PD  +Y 
Sbjct: 596 RTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYK 655

Query: 543 VLIGGLISQDRSG----EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           ++  GL    R G    EA+ +L EM + G       +   A  L   G
Sbjct: 656 IVFRGLC---RGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 127/310 (40%), Gaps = 64/310 (20%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV---- 408
            +G + R++   +A  + +  +D  G + +   +N +L  L +  K    IKL E     
Sbjct: 131 FIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSK----IKLLESAYTE 186

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRR 448
           M ++G  P+V ++  +I   C+   A                     +T L+ GF     
Sbjct: 187 MSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGS 246

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALI----KLMKI--------QKMP------------ 484
           ++    L   M E GC P  +T N LI    KL ++        Q++             
Sbjct: 247 IEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFST 306

Query: 485 -----------DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
                      D A+++   M++ G +P ++TY+ ++      G  E  + + ++M+  G
Sbjct: 307 FVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSG 366

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C PD  ++  LI  L ++++  EA     E+  KG+   V  +N     L + G  ++  
Sbjct: 367 CLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAV 426

Query: 594 ELAQKMRFSG 603
            L ++M+ SG
Sbjct: 427 RLFEEMKSSG 436



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 52/282 (18%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           D  G   N+ T+N+++  L  A + +    ++++M  +GL                  + 
Sbjct: 503 DVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGL------------------QP 544

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
             V    ++  Y                 +  + K A +L     + F  ++ TY  L+ 
Sbjct: 545 NNVTYNSILTHY---------------CKQGNISKAADILQTMTANGFEVDVVTYATLIN 589

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+ +    A ++   M  KG KP   A+N +++ L +     DA+ LF  M   G  P
Sbjct: 590 GLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPP 649

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  +Y I+    C+    +                 +D L EM + G  P+  ++  L +
Sbjct: 650 DAFTYKIVFRGLCRGGGPIKE--------------AFDFLVEMADNGFIPEFSSFRMLAE 695

Query: 477 LMKIQKMPDEAVRIYKEMV-RSGFKPT----IHTYNMIMKSY 513
            +    M D  +R  + +V ++ F+ +    I  Y  I K Y
Sbjct: 696 GLLNLGMDDYLIRAIELIVEKANFRESDISAIRGYLRIRKYY 737


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 174/397 (43%), Gaps = 61/397 (15%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY S++  L + ++ E  +  L +M  KG    + T+   ++A        +A    E M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--- 362
                   V T   L++ L +     EA  L  K++ +  P   TY  L+ G C+ +   
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 363 ---NLME-----------------------------AGRVWNEMIDKGFKPDVVAHNIML 390
              +L+E                             A RV+ +++ +GF+PDVV ++ ++
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 391 EGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           +GL K G+  +AI LF  ++K+    PN  +Y  +I  FC+                   
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             +   YT L+ GF    R+D  YDLL +M  +G  PD +T+ +L+  +  +    +AV 
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK-VWDEMIRRGCCPDDNSYTVLIGGL 548
           I  EM R    PT++TYN I+  Y +    E  RK + +EM    C P+  S+ ++I GL
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGL 369

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
              +RS EA + +EE   +     V+ Y      L R
Sbjct: 370 CKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCR 406



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 20/264 (7%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           + +  TYT L+ G C+VK L +A     +M+ KGF PDV  +  ++  L    +  +A K
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCK-------------------QNAAVYTCLITGFGN 445
             E M  +  +PNV +YT++I   CK                     A  Y  LI+G   
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCK 127

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             R    YDLL+EM   GC PD  TY  LI      K  D+A+R+++++V  GF+P + T
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           Y+ ++    + G  +    ++  MI+ G C P+  +Y  LI G     +  EA   LE M
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR 588
            E G    V+ Y        +  R
Sbjct: 248 AETGSSPDVVTYTTLMNGFCKLAR 271



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 178/381 (46%), Gaps = 36/381 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS++S L +A +      +LEEM   G +  + T+   +  F  +K+   A+ +FE +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKN 363
               F+  V T +CL++ L +    KEA  LF ++       PN  TY  L+ G+CR+  
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + EA  +   M + G  PDVV +  ++ G  K+ +  DA  L   M  KG +P+V ++T 
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 424 MIWKFCKQN------------------AAVYT--CLITGFGNRRRMDIVYDLLKEMEERG 463
           ++   C++N                    VYT   ++ G+    +++     +  +EE  
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMD 354

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           CPP+ +++N +I+ L K+ +   EA+ + +E  R    P +  Y  ++    +    +  
Sbjct: 355 CPPNVVSFNIMIRGLCKVNR-SSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEA 413

Query: 523 RKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            +V+ +M+   GC P+  +Y+ L+ GL +      A  Y    +EKG    +  YN    
Sbjct: 414 CRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGY----IEKGCVPNIGTYNLLID 469

Query: 582 DLSRAGRS----YVLDELAQK 598
              +A R      +LD++ Q+
Sbjct: 470 AFRKANRDEDARELLDDMVQR 490



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 143/292 (48%), Gaps = 22/292 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TYNS++S   R  + +  +++LE M E G    + T+   MN F        A  + 
Sbjct: 220 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
             M +      V T   L++ L R ++L     +L +  +   +P + TY  +L G+CR 
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRA 339

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L EA +   E +D    P+VV+ NIM+ GL K+ + S+A++L E  + +  +P+V  Y
Sbjct: 340 NQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           T +I   C++      C +      R+M         +EE GC P+ +TY+ L+  +   
Sbjct: 398 TTVIDGLCREKKVDEACRVY-----RKM---------LEEPGCLPNSITYSTLVTGLCNA 443

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            M D A    +  +  G  P I TYN+++ ++ +    E  R++ D+M++RG
Sbjct: 444 GMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 16/222 (7%)

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           D V +  +++GL K+ +   A+     M +KG  P+V +YT +I   C +N         
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN--------- 60

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                 R+      L+EM  R   P+ +TY  LI  +      DEAV +  +M R    P
Sbjct: 61  ------RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVP 113

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           T  TYN ++    +         + +EM+  GC PD  +YT LI G     +S +A +  
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 173

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           E+++ +G +  V+ Y+     L + GR     +L  +M  SG
Sbjct: 174 EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C  +   YT LI G    +R++     L +M  +G  PD  TY A+I  + ++    EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +  +EM      P + TY +++    + G  +    +  +M R+ C P   +Y  LI GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGL 125

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              +R+ EAY  LEEM+  G    +  Y        ++ +S
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 166



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           C  D +TY +LI+ L K++++ ++A+    +MV  GF P ++TY  ++ +          
Sbjct: 7   CSADFVTYTSLIQGLCKVKRL-EQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           RK  +EM  R   P+  +YTVLI GL    R  EA   L +M +K +   V  YN   + 
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNSLISG 124

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L +A R+    +L ++M +SG
Sbjct: 125 LCKAERASEAYDLLEEMVYSG 145


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 25/378 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N +M  + R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 84  FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 143

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           K      V T   LL  L       EA  LF ++     P++ T+T L+ G CR   ++E
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR---PDVLTFTTLMNGLCREGRVVE 200

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIMI 425
           A  + + M++ G +PD + +   ++G+ K+G    A+ L   M+      PNV  Y+ +I
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK                     N   Y C+I GF    R      LL+EM ER   
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYNALI     +    EA  +Y EM+  G  P   TYN ++  + +    +    +
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M  +GC PD  ++T LI G     R  +  + L EM  +G+ A  + YN        
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 586 AGRSYVLDELAQKMRFSG 603
            G      +L+Q+M  SG
Sbjct: 441 VGDLNAALDLSQQMISSG 458



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 190/452 (42%), Gaps = 86/452 (19%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           G+ L H  V + L+ F    RP                +  T+ ++M+ L R  +    V
Sbjct: 160 GLCLDHR-VSEALDLFHQICRP----------------DVLTFTTLMNGLCREGRVVEAV 202

Query: 266 SMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYK-FKAGVDTINCLLEN 323
           ++L+ M E GL   + T+   ++      +   A+ +   M +    K  V   + +++ 
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDG 262

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +     ++  LF +++ +   PN+ TY  ++GG+C       A R+  EM+++   P+
Sbjct: 263 LCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPN 322

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN---------- 432
           VV +N ++   +K GK  +A +L++ M  +G  PN  +Y  MI  FCKQ+          
Sbjct: 323 VVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY 382

Query: 433 ----------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI------- 475
                        +T LI G+   +R+D   +LL EM  RG   + +TYN LI       
Sbjct: 383 LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 442

Query: 476 ----------KLMKIQKMPD------------------EAVRIYKEMVRS---------- 497
                     +++     PD                  +A+ ++K M +S          
Sbjct: 443 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPF 502

Query: 498 -GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P + TYN+++      G +    ++++EM  RG  PD  +Y+ +I GL  Q R  E
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           A +    M  K     V+ +N       +AGR
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 594



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 28/339 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 303 ELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
            LM        V T   L++   G  ++    +LL +  +     N  TY  L+ G+C V
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK--------- 412
            +L  A  +  +MI  G  PD+V  N +L+GL   GK  DA+++F+ M+           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 413 --GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P+V +Y I               LI G  N  +     +L +EM  RG  PD +T
Sbjct: 502 FNGVEPDVLTYNI---------------LICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y+++I  +  Q   DEA +++  M    F P + T+N ++  Y + G  + G +++ EM 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           RRG   D   Y  LI G         A    +EM+  G+
Sbjct: 607 RRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 68/371 (18%)

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCR 360
            E+ +K  F   + T NC++     S     AQ LL + L+ + +PN+ TY  L+  + +
Sbjct: 277 IEMQDKGIF-PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK 335

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                EA  +++EM+ +G  P+ + +N M++G  K  +   A  +F +M  KG SP+V +
Sbjct: 336 EGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT 395

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +T +I  +C                      N   Y  LI GF     ++   DL ++M 
Sbjct: 396 FTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMI 455

Query: 461 ERGCPPDGLTYNALI----------------KLMKIQKM------------PD------- 485
             G  PD +T N L+                K M+  KM            PD       
Sbjct: 456 SSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNIL 515

Query: 486 -----------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
                      EA  +Y+EM   G  P   TY+ ++    +    +   +++  M  +  
Sbjct: 516 ICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF 575

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++  LI G     R  +  +   EM  +G+ A  + Y        + G      +
Sbjct: 576 SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALD 635

Query: 595 LAQKMRFSGKF 605
           + Q+M  SG +
Sbjct: 636 IFQEMISSGVY 646



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 33/290 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + +  T+ +++     A++ +  + +L EM  +GL++   T+   ++ F    +   A
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 447

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T N LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 448 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 507

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M +K  SPNV ++  +I  +CK                     +A +Y  LI GF   
Sbjct: 568 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 627

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             ++   D+ +EM   G  PD +T   ++     ++  + AV + +++ R
Sbjct: 628 GNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQR 677



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 56/300 (18%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G   +K L +A  ++++M+     P V+  N ++  ++++ +    I L++ M+ K 
Sbjct: 52  LRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQ 111

Query: 414 PSPNVRSYTIMIWKF--------------------------------------------- 428
              ++ S+TI+I  F                                             
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                 C+ +   +T L+ G     R+     LL  M E G  PD +TY   +  M   K
Sbjct: 172 DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM--CK 229

Query: 483 MPD--EAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           M D   A+ + ++M   S  KP +  Y+ I+    + G +     ++ EM  +G  P+  
Sbjct: 230 MGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIV 289

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y  +IGG     R   A + L+EMLE+ +   V+ YN       + G+ +   EL  +M
Sbjct: 290 TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM 349


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 202/460 (43%), Gaps = 74/460 (16%)

Query: 210 SHNLVVDVLERFRH---ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET--M 264
           S N++++ L R  H   A     + F     K G   ++ T+N++++  GR  + E    
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMF-----KLGIQPDAITFNTLIN--GRCIEGEIKEA 181

Query: 265 VSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           V +  EM  +G    + ++   +N    +     A+ +   M +   K  +     ++++
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +  L  +A  L  ++  R   P++ TY+ +L G+C + +L EA  ++NEM+ +   P+
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT-------------------- 422
            V   I+++GL K G  S+A  +FE M  KG  PN  +Y                     
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD 361

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           IM+ K C      Y  LI G+  RRR+D    LL EM E+   PD +TY+ L++ +    
Sbjct: 362 IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421

Query: 483 MPDEAVRIYKEMVRSGFKPTIHT-----------------------------------YN 507
            P EA+ ++KEM  SG  P + T                                   YN
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           ++++  F  G  E+ ++++ ++   G  P   +YT++I GL+ +  S EAY+   +M + 
Sbjct: 482 ILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDD 541

Query: 568 GMKAPVLDYN----KFAADLSRAGRSYVLDELAQKMRFSG 603
           G       YN     F  +   +    ++DE+  K RFS 
Sbjct: 542 GFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGK-RFSA 580



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 21/347 (6%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL 336
           S+  F   + + A  K+    V++   M+ +     V ++N L+  L R + +     +L
Sbjct: 91  SVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVL 150

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               K    P+  T+  L+ G C    + EA  ++NEM+ +G +PDV++++ ++ GL K 
Sbjct: 151 GKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKS 210

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           G  S A++L   M+ KG  PN+ +YT +I   CK                     +   Y
Sbjct: 211 GNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTY 270

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           + ++ GF +   ++    L  EM  R   P+ +T+  L+  +  + M  EA  +++ M +
Sbjct: 271 STILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTK 330

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P  +TYN +M  Y      +  +KV D M+ +GC P  +SY +LI G   + R  E
Sbjct: 331 KGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDE 390

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A   L EM EK +    + Y+     L + GR      L ++M  SG
Sbjct: 391 AKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSG 437



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           F+  C +G  P       TY++++  L +    +  + +L+ M E  +   +  + I + 
Sbjct: 430 FKEMCSSGLLPDLM----TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIE 485

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
               A + + A  +F  +     +  + T   +++ L +  L  EA  LF K++   F P
Sbjct: 486 GMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLP 545

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           N  +Y V++ G+ + ++   A R+ +EM+ K F  D     ++L+
Sbjct: 546 NSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 58/138 (42%)

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  + +   +  +  +K     V +  +M   G    +++ N+++    +  +      V
Sbjct: 90  PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISV 149

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M + G  PD  ++  LI G   +    EA     EM+ +G +  V+ Y+     L +
Sbjct: 150 LGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCK 209

Query: 586 AGRSYVLDELAQKMRFSG 603
           +G + +  +L +KM   G
Sbjct: 210 SGNTSMALQLLRKMEEKG 227


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 203/444 (45%), Gaps = 23/444 (5%)

Query: 163 SESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           +E  + ++S + T   R + ER  +++ ++F    + E  L+   + + H LV +V+ + 
Sbjct: 42  NEDAVAALSPRYTNSVRVLDERFIRIL-KIFKWGPDAERALEVLMLRVDHWLVREVM-KT 99

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
                   +FF WA  K  + H++ TY +++  L    Q+  M  M++EM    +  +  
Sbjct: 100 DVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTP 159

Query: 282 FKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +++  +     AK   KA+ IF  +   K +      N ++  L      ++   L+++
Sbjct: 160 MELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNE 219

Query: 340 LKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           + +     P+  TY+ L+  +C++     A R+ NEM + G +P    + +++    K+ 
Sbjct: 220 MSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLD 279

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
               A+ LFE M+               + +C+ +   YT LI G G   R+D  Y    
Sbjct: 280 NVHGALSLFEEMR---------------YMYCRPDVFTYTELIRGLGKAGRIDEAYHFYH 324

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+  GC PD +  N +I  +      D+ +++++EM  S   P + TYN I+K+ F++ 
Sbjct: 325 EMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESK 384

Query: 518 NYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           +       W E ++  G  P   +Y++LI G    +R  +A   LEEM EKG       Y
Sbjct: 385 SRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444

Query: 577 NKFAADLSRAGRSYVLDELAQKMR 600
                 L +A R  +  EL Q+++
Sbjct: 445 CSLIDALGKAKRYDLACELFQELK 468



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 170/419 (40%), Gaps = 59/419 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAI 301
            ++ YNSM+ +L    Q+E +  +  EM  +G    +T  +   ++AF     +  A+ +
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
              M +   +        ++    +      A  LF+++++ +  P++ TYT L+ G  +
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGK 312

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM----------- 409
              + EA   ++EM  +G KPD V  N M+  L K G+  D +KLFE M           
Sbjct: 313 AGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVT 372

Query: 410 -------------------------KAKGPSPNVRSYTIMIWKFCKQN------------ 432
                                    K  G SP+  +Y+I+I  FCK N            
Sbjct: 373 YNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEM 432

Query: 433 --------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                    A Y  LI   G  +R D+  +L +E++E         Y  +IK +      
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+A+ ++ EM + G  P ++ YN +M    +    +       +M   GC PD NSY ++
Sbjct: 493 DDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNII 552

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + GL        A + L  M    +K   + YN   + LS AG      EL ++M   G
Sbjct: 553 LNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALG 611



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 18/334 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
           TY  ++  LG+A + +       EM  +G          M N    A      + +FE M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
                   V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+   
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNR 421

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y +
Sbjct: 422 IEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 481

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI                  G   R+D   +L  EM + GC P+   YNAL+  +    M
Sbjct: 482 MI---------------KHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACM 526

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+   ++M   G  P I++YN+I+    +TG      ++   M      PD  SY  
Sbjct: 527 LDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNT 586

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           ++  L       EA + ++EM   G +  ++ Y+
Sbjct: 587 VLSALSHAGMFEEAAELMKEMNALGFEYDLITYS 620



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             A+ +F+ M+K      V   N L+  L R+ +  EA     K++ H   P++ +Y ++
Sbjct: 493 DDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNII 552

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G  +      A  +   M +   KPD V++N +L  L   G   +A +L + M A G 
Sbjct: 553 LNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612

Query: 415 SPNVRSYT 422
             ++ +Y+
Sbjct: 613 EYDLITYS 620



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAV 488
           + + + Y  LI       +   ++ +++EM     C    +  + +I+++   KM  +A+
Sbjct: 120 QHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAI 179

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGG 547
            I+ ++     +PT   YN ++      G YE   ++++EM   G C PD  +Y+ LI  
Sbjct: 180 TIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISA 239

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
                R   A + L EM E GM+     Y    +   +    +    L ++MR+
Sbjct: 240 FCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRY 293



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           K G   N   YN++MS L RA   +  ++ + +M E G L  + ++ I +N  A      
Sbjct: 504 KLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ +   M     K    + N +L  L  + + +EA  L  ++    F  +L TY+ +L
Sbjct: 564 RAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSIL 623

Query: 356 GGWCRV 361
               +V
Sbjct: 624 EAIGKV 629


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 161/330 (48%), Gaps = 3/330 (0%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +F+    +++EM  KG +    T+   +     A + +KA  +F+ M        V T  
Sbjct: 437 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 496

Query: 319 CLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+++  ++ L ++AQ LF++++    +P + TYT L+  + + K + +A  +++ M+D 
Sbjct: 497 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 556

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC-KQNAAVY 436
           G +P+ V +  +++GL K G  S A +++  +     S +   Y     +     N   Y
Sbjct: 557 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 616

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             L+ G     ++D  ++LL  M   GC P+ + Y+ALI         D A  ++ +M +
Sbjct: 617 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 676

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G+ P++HTY  ++   F+ G  ++  KV  +M++  C P+  +YT +I GL     S +
Sbjct: 677 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK 736

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           A K L  M EKG    V+ Y      L ++
Sbjct: 737 ALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 164/380 (43%), Gaps = 39/380 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  +  TYN+++ +L  A Q +    + +EM E G   M+ F +   A A  KE + A 
Sbjct: 204 GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF-CMDRFTVGCFAHALCKEGRWAD 262

Query: 300 AIFELMNKYKFKAGVDTINC--LLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           A+ +++ +  FK  +DT+ C  ++  L  +    EA     +++ +   PN+ TY  LL 
Sbjct: 263 AL-DMIEREDFK--LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 319

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ + K L    R+ N M+ +G  P+    N ++         + A KL   M   G  P
Sbjct: 320 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 379

Query: 417 NVRSYTIMIWKFCKQ-----------------------------NAAVYTCLITGFGNRR 447
               Y I I   C Q                             N A +   + G G   
Sbjct: 380 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG--- 436

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           + D  + L+KEM  +G  PD  TY+ +I  +      ++A  +++EM   G  P ++TY 
Sbjct: 437 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 496

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++ S+ + G  E  + +++EM   GC P   +YT LI   +   +  +A      M++ 
Sbjct: 497 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 556

Query: 568 GMKAPVLDYNKFAADLSRAG 587
           G +   + Y      L +AG
Sbjct: 557 GCRPNDVTYGALVDGLCKAG 576



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 176/447 (39%), Gaps = 49/447 (10%)

Query: 194 LDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMS 253
            D   E VL  C   L+ ++VV VL   R A     RFF WA  + G++H    Y+++  
Sbjct: 88  FDGKAERVLRRCRGFLTDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALAD 147

Query: 254 IL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER----KKAVAIFELMN 306
            L   GRAR  E    +L E+GE+     E     +N       R     +A+     + 
Sbjct: 148 ALGFDGRARDAE---RLLREIGEE---DREVLGRLLNVLVRRCCRGGMWNEALEELGRLK 201

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
            + ++    T N L++ L  +    +  L F   K             +G  C    L +
Sbjct: 202 DFGYRPSKVTYNALVQVLSSA---GQVDLGFRVQKEMSESGFCMDRFTVG--CFAHALCK 256

Query: 367 AGRVWNEMID----KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            GR W + +D    + FK D V    M+ GL++     +A+     M+     PNV +Y 
Sbjct: 257 EGR-WADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYR 315

Query: 423 IMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            ++  F                    C  N +++  L+  + N +     Y LL  M   
Sbjct: 316 TLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTC 375

Query: 463 GCPPDGLTYNALI-KLMKIQKMP-----DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           GCPP  + YN  I  +   +K+P     D A +IY EM+ +             +     
Sbjct: 376 GCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGV 435

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G ++   ++  EM+R+G  PD ++Y+ +I  L    +  +A+   +EM   G+   V  Y
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 495

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
                   +AG       L ++MR  G
Sbjct: 496 TILIDSFCKAGLIEQAQWLFEEMRSVG 522


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 192/430 (44%), Gaps = 63/430 (14%)

Query: 228 AFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM---------GEKGLL 277
           AF+ F +AG   PGF+H   TY+S++  L RAR F+ + S+L ++         G+   +
Sbjct: 31  AFQIFDYAGKYHPGFSHTYDTYHSIIDKLSRARAFDGVESLLSQLSRNSSHIKCGDDVFI 90

Query: 278 SM-------ETFKIAMNAFAAAKERKKAVAIFELMN------------------------ 306
           S+          ++A+  F   KE        +L+N                        
Sbjct: 91  SVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKD 150

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           KY     V + N L++ L +    + A  +FD++      PNL TYT +LGG+    +L+
Sbjct: 151 KYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLV 210

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A +V++E+ DKG+ PD   + +++ G  K G+ SDAIK+ + M+  G  PN  +Y +MI
Sbjct: 211 NAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMI 270

Query: 426 WKFCKQN-------------------AAVYTC-LITGFGNRRRMDIVYDLLKEMEERGCP 465
             +CK+                    ++   C +I       +++    L K M E+ C 
Sbjct: 271 DAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCL 330

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD    + LI  +  +    EA +++ E    G  P++ TYN ++    + G      ++
Sbjct: 331 PDNAIMSTLIHWLCKEGKVWEARKLFDEF-EQGTIPSLMTYNTLIAGMCERGELNEAGRL 389

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           WD+M+ + C P+  +Y +LI G +      E  + LEEML+ G       Y      L  
Sbjct: 390 WDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQE 449

Query: 586 AGRSYVLDEL 595
           +G    +D++
Sbjct: 450 SGMEGDVDKV 459



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%)

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           + G  P + ++N+++K+  +  + E   KV+DEM   G  P+  +YT ++GG +S+    
Sbjct: 151 KYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLV 210

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            A K   E+ +KG       Y        + GR     ++   M ++G
Sbjct: 211 NAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNG 258



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           R +L +  +L  D ++ R  PN  TY +L+ G+ +   + E  R+  EM+D G  P+   
Sbjct: 380 RGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKST 439

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + +++EGL + G   D  K+  +  A
Sbjct: 440 YTLLIEGLQESGMEGDVDKVMSMAMA 465


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 183/399 (45%), Gaps = 46/399 (11%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           ++N ++S L + + +  + S+  +M   GL S   T  I +N        ++  A F  +
Sbjct: 71  SFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGI 130

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            +  +   + T N L++ L       EA  LF ++ K   TP++ TY  L+ G C   N+
Sbjct: 131 LRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNI 190

Query: 365 MEAGRVWNEMIDK------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN- 417
             A ++  EM++         KP+V+ +NI+++GL K+G+  +A +LFE MK +G  PN 
Sbjct: 191 NIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNE 250

Query: 418 ---------VRSYTIMIWKFCKQNAAV--------------------YTCLITGFGNRRR 448
                    + ++ ++I   CK+   +                    Y  LI GF     
Sbjct: 251 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 310

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
           ++   +L   M  +GC PD ++YN LI    K +K++    EA+++Y EM+  G +P + 
Sbjct: 311 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVE----EAMKLYNEMLLVGKRPNVI 366

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY+ ++K  F  G  +  +K++  M   G   +  +Y + + GL   D   EA K   E+
Sbjct: 367 TYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL 426

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                K  + + N     L +AG+     EL +K+   G
Sbjct: 427 KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 465



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 152/342 (44%), Gaps = 20/342 (5%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           S+ +F   ++  A  K   +  +++  M      +   T+N LL  L      +E    F
Sbjct: 68  SLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAF 127

Query: 338 DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
             +  R ++PN+ TY  L+ G C    + EA R++  M   G  PDVV +  +++GL   
Sbjct: 128 AGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGT 187

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G  + A+KL + M       ++  Y I     CK N   Y  ++ G     R D    L 
Sbjct: 188 GNINIALKLHQEMLN-----DISRYEIN----CKPNVITYNIIVDGLCKVGREDEAKQLF 238

Query: 457 KEME----------ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           +EM+          ++G  PD +T+N LI  +  +    EA ++   M+ SG  P + TY
Sbjct: 239 EEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTY 298

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N +++ +   G+    R+++  M  +GC PD  SY VLI G     +  EA K   EML 
Sbjct: 299 NSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLL 358

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
            G +  V+ Y+     +  AG+     +L   M+  G  E S
Sbjct: 359 VGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENS 400



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 169/364 (46%), Gaps = 33/364 (9%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-----------METFKIAMNAFAAA 292
           N  TYN ++  L +  + +    + EEM  +G++            M TF + ++     
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKE 273

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTY 351
            +  +A  +  +M +      + T N L+E          A+ LF  +  +   P++ +Y
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            VL+ G+ +   + EA +++NEM+  G +P+V+ ++ +L+G+   GK  DA KLF VMKA
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393

Query: 412 KGPSPNVRSYTIMIWKFCKQNA-----AVYT---------------CLITGFGNRRRMDI 451
            G + N  +Y I +   CK +       ++T               CLI G     +++ 
Sbjct: 394 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 453

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            ++L +++   G  P+ +TY  +I     +   D+A  + ++M  +G  P I TYN +M+
Sbjct: 454 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 513

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM-LEKGMK 570
            ++++   E   ++   M ++   PD  + ++++  L   ++  E    L    ++KG+ 
Sbjct: 514 GFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGVD 573

Query: 571 APVL 574
             +L
Sbjct: 574 KHLL 577



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 191/445 (42%), Gaps = 49/445 (11%)

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQF 261
           D C +N+  N + +V  R R        F  +AG  + G++ N  TYN+++  L    + 
Sbjct: 103 DRCTLNILLNCLCNV-NRLREG------FAAFAGILRRGYSPNIVTYNTLIKGLCMEHRI 155

Query: 262 ETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM----NKYKF--KAGV 314
                +   M + G    + T+   +           A+ + + M    ++Y+   K  V
Sbjct: 156 SEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNV 215

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR-----------FTPNLTTYTVLLGGWCRVKN 363
            T N +++ L +     EA+ LF+++K +             P++ T+ VL+   C+   
Sbjct: 216 ITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGK 275

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           ++EA ++   MI+ G  PD+V +N ++EG   +G  + A +LF  M +KG  P+V SY +
Sbjct: 276 VIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNV 335

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  + K                     N   Y  L+ G     ++D    L   M+  G
Sbjct: 336 LINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 395

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              +  TY   +  +       EA++++ E+  S FK  I   N ++    + G  E   
Sbjct: 396 IAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAW 455

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           ++++++   G  P+  +YT++I G   + +  +A   +++M   G    ++ YN      
Sbjct: 456 ELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGF 515

Query: 584 SRAGRSYVLDELAQKMRFSGKFEVS 608
             + +   L+E+ Q +    + +VS
Sbjct: 516 YESNK---LEEVVQLLHRMAQKDVS 537



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 31/259 (11%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           TP+L+++  LL G  ++K+  +   ++N+M   G   D    NI+L  L  + +  +   
Sbjct: 66  TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFA 125

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            F  +  +G SPN+ +Y  +I   C ++               R+     L   M++ GC
Sbjct: 126 AFAGILRRGYSPNIVTYNTLIKGLCMEH---------------RISEATRLFLRMQKLGC 170

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS------GFKPTIHTYNMIMKSYFQTGN 518
            PD +TY  LIK +      + A+++++EM+          KP + TYN+I+    + G 
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 519 YEMGRKVWD----------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            +  +++++          EM+ +G  PD  ++ VLI  L  + +  EA K L  M+E G
Sbjct: 231 EDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESG 290

Query: 569 MKAPVLDYNKFAADLSRAG 587
           +   ++ YN         G
Sbjct: 291 IVPDLVTYNSLIEGFCMVG 309


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 186/415 (44%), Gaps = 36/415 (8%)

Query: 210 SHNLVVDV------LERFRHARRPAFRFFCW-AGDKPGFAHNSRTYNSMMSILGRARQFE 262
           S NLV +V      ++    A+R      C+ A    G   ++  Y +++S L + ++ +
Sbjct: 37  SKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLD 96

Query: 263 TMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
             +++L EM + G   ++ T+   ++      E  +A  +FE M   +    + T N LL
Sbjct: 97  QALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLL 156

Query: 322 ENLGRSKLPKEAQLLF----DKLKH----RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           + L R+   + A  LF    D+  H    R +PN+ TY+VL+ G C+   + +A  +   
Sbjct: 157 DGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLES 216

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-- 431
           M  +G  PDV+ + I+++GL K  K + A ++   M   G  PN+ +Y  ++   C+   
Sbjct: 217 MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 276

Query: 432 ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                             N   Y  LI G     R+     +L +M ++G  PD + YN 
Sbjct: 277 VSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNM 336

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  +      DE++ + +  V  G KP + TY+ ++    ++   +   ++   +  RG
Sbjct: 337 LINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 396

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           C PD   Y+ LI GL    +  EA+   E M   G  A V+ Y+     L +AGR
Sbjct: 397 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGR 451



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 161/317 (50%), Gaps = 26/317 (8%)

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTY 351
           K   +A+AI   M  +  +  V T N L++ L ++  P  AQ LF+ +K    +P++ TY
Sbjct: 93  KRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTY 152

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKG-------FKPDVVAHNIMLEGLLKIGKRSDAIK 404
             LL G  R   L  A  ++ EM+D+          P+V+ ++++++GL K  + S A++
Sbjct: 153 NTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVE 212

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L E MKA+G SP+V +YTI++   CK++               ++   +++L+EM + GC
Sbjct: 213 LLESMKARGCSPDVITYTILVDGLCKES---------------KVAAAWEVLREMLDAGC 257

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+ +TYN+L+  +   +   +A+ + ++M   G  P + TY  ++    + G  +    
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 317

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +  +MI +G  PD   Y +LI GL   D+  E+   L   +  G+K  V+ Y+     L 
Sbjct: 318 MLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC 377

Query: 585 RAGRSYVLDELAQKMRF 601
           R+ R   LDE  + + +
Sbjct: 378 RSNR---LDEACRLLLY 391



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 170/374 (45%), Gaps = 31/374 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA-- 300
           N  TY+ ++  L +A +    V +LE M  +G    + T+ I ++     KE K A A  
Sbjct: 190 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLC--KESKVAAAWE 247

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +   M        + T N LL  L R++   +A  L   +  R  TPN+ TY  L+ G C
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 307

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +V  + +A  +  +MIDKG  PD++ +N+++ GL K  +  ++I L     + G  P+V 
Sbjct: 308 KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVV 367

Query: 420 SYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y+ +I+  C+ N                      +Y+ LI G     ++D  +DL + M
Sbjct: 368 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 427

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              GC  D +TY+ LI  +      DEA  +   MVR G  P+  TYN ++K      + 
Sbjct: 428 AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHL 487

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE-----MLEKGMKAPVL 574
           +   ++ +EM R  C P   +Y +LI G+   +R   A   LE+     +   G     +
Sbjct: 488 DEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTI 547

Query: 575 DYNKFAADLSRAGR 588
            Y+     L +AGR
Sbjct: 548 AYSSLIDGLCKAGR 561



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 22/265 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ TY  LL G+CR   + +A R ++EM  K   P+V   +I+++GL K  +  DA++ 
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M+  G                  +  +YT L++G    +R+D    +L EM + GC 
Sbjct: 67  FRAMQGSGIV---------------ADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCE 111

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYN+LI  +     PD A  +++ M      P++ TYN ++   F+TG  E    +
Sbjct: 112 PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 171

Query: 526 WDEMIRR-------GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           + EM+ R        C P+  +Y+VLI GL   +R  +A + LE M  +G    V+ Y  
Sbjct: 172 FQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTI 231

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
               L +  +     E+ ++M  +G
Sbjct: 232 LVDGLCKESKVAAAWEVLREMLDAG 256



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 177/399 (44%), Gaps = 35/399 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYNS++  L +  + +    + E M   +   SM T+   ++      + ++A
Sbjct: 109 GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 168

Query: 299 VAIF-ELMNKY------KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
           +A+F E++++       +    V T + L++ L ++    +A  L + +K R  +P++ T
Sbjct: 169 MALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVIT 228

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           YT+L+ G C+   +  A  V  EM+D G  P++V +N +L GL +  + SDA+ L   M 
Sbjct: 229 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 288

Query: 411 AKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMD 450
            +G +PNV +Y  +I   CK                     +  +Y  LI G     ++D
Sbjct: 289 CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVD 348

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
               LL+     G  PD +TY+++I  +      DEA R+   +   G  P +  Y+ ++
Sbjct: 349 ESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLI 408

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               + G  +    +++ M   GC  D  +Y+ LI GL    R  EA+  L  M+  G  
Sbjct: 409 DGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTP 468

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
              + YN     L        L+ L + +    + E SN
Sbjct: 469 PSTMTYNSLIKGLCD------LNHLDEAIELVEEMERSN 501



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 151/349 (43%), Gaps = 24/349 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++    R  + +      +EM  K L+ ++    I ++    AK    A+  F  M
Sbjct: 11  TYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAM 70

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                 A       LL  L + K L +   +L +   H   PN+ TY  L+ G C+    
Sbjct: 71  QGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEP 130

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-------SPN 417
             A  ++  M      P +V +N +L+GL + GK   A+ LF+ M  +         SPN
Sbjct: 131 DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPN 190

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y+++I   CK N               R+    +LL+ M+ RGC PD +TY  L+  
Sbjct: 191 VITYSVLIDGLCKAN---------------RVSQAVELLESMKARGCSPDVITYTILVDG 235

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +     A  + +EM+ +G  P + TYN ++    +         +  +M  RGC P+
Sbjct: 236 LCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 295

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
             +Y  LI GL    R  +A   L +M++KG    ++ YN     L +A
Sbjct: 296 VVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKA 344



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 161/359 (44%), Gaps = 28/359 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYNS++  L RAR+    ++++ +M  +G   ++ T+   ++        K A
Sbjct: 256 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 315

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            A+   M        +   N L+  L ++ ++ +   LL   +     P++ TY+ ++ G
Sbjct: 316 CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 375

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR   L EA R+   +  +G  PDV+ ++ +++GL K GK  +A  L+EVM   G   +
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y+ +I   CK                     +   Y  LI G  +   +D   +L++
Sbjct: 436 VVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 495

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE-----MVRSGFKPTIHTYNMIMKS 512
           EME   C P  +TYN LI  M   +  D AV + ++     +   G       Y+ ++  
Sbjct: 496 EMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDG 555

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL-ISQDRSGEAYKYLEEMLEKGMK 570
             + G        + EMI  G  PD  +Y++L+ GL  S+D     +  L++M++ G +
Sbjct: 556 LCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 62/164 (37%)

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   C+ +   Y  L+ GF     +D       EM  +   P+    + LI  +   K  
Sbjct: 1   MLPICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRS 60

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A+R ++ M  SG       Y  ++   ++    +    +  EM   GC P+  +Y  L
Sbjct: 61  IDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSL 120

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           I GL   +    A +  E M        ++ YN     L R G+
Sbjct: 121 IDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 164



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 48/104 (46%)

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P ++TY  +++ + + G  +  ++ +DEM  +   P+    ++LI GL    RS +A +
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               M   G+ A  + Y    + L +  R      +  +MR  G
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHG 109


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 174/378 (46%), Gaps = 25/378 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 80  FNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKIT 139

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           K  F+  V T + LL  L       EA  LF ++     PN+ T+T L+ G CR   ++E
Sbjct: 140 KLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR---PNVVTFTTLMNGLCREGRVVE 196

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMI 425
           A  + + M++ G +P+ + +  +++G+ KIG    A+ L   M+      PNV  Y+ +I
Sbjct: 197 AVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAII 256

Query: 426 ---WKFCKQNAA-----------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              WK  + + A                  Y C+I GF +  R      LL+EM ER   
Sbjct: 257 DGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKIN 316

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TY+ALI     ++   EA  +Y EM+  G  P   TYN ++  + +    +    +
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M  +GC PD  ++  LI G     R  +  + L EM E G+ A    YN        
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 586 AGRSYVLDELAQKMRFSG 603
            G      +L+Q+M  SG
Sbjct: 437 VGDLNAALDLSQQMISSG 454



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 32/305 (10%)

Query: 316 TINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T NC+++    S    EAQ LL + L+ +  PN+ TY+ L+  + + +   EA  +++EM
Sbjct: 286 TYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM 345

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--- 431
           + +G  P+ + +N M++G  K  +   A  +F VM  KG SP+V ++  +I  +C     
Sbjct: 346 LPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRI 405

Query: 432 -----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            +   Y  LI GF     ++   DL ++M   G  PD +T N L
Sbjct: 406 DDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTL 465

Query: 475 IKLMKIQKMPDEAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGR 523
           +  +       +A+ ++K M +S           G +P + TYN+++      G +    
Sbjct: 466 LDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAE 525

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +++ EM  RG  P+  +Y+ +I GL  Q R  EA +  + M  K     V+ +N   +  
Sbjct: 526 ELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGY 585

Query: 584 SRAGR 588
            +AGR
Sbjct: 586 CKAGR 590



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 28/339 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY+++++   + R+F     + +EM  +G++ +  T+   ++ F        A  +F
Sbjct: 318 NVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMF 377

Query: 303 ELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
            +M        V T N L++   G  ++    +LL +  +     + TTY  L+ G+C V
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK--------- 412
            +L  A  +  +MI  G  PD+V  N +L+GL   GK  DA+++F+ M+           
Sbjct: 438 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRP 497

Query: 413 --GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P+V++Y I               LI+G  N  +     +L KEM  RG  P+ +T
Sbjct: 498 FNGVEPDVQTYNI---------------LISGLINEGKFLEAEELYKEMPHRGIVPNTIT 542

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y+++I  +  Q   DEA +++  M    F P + T+N ++  Y + G  + G +++ EM 
Sbjct: 543 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMG 602

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           RRG   D  +Y  LI G         A    +EM+  G+
Sbjct: 603 RRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGV 641



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 131/291 (45%), Gaps = 33/291 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + +  T+N+++     A++ +    +L EM E GL++   T+   ++ F    +   A
Sbjct: 384 GCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAA 443

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK------------HRFTP 346
           + + + M        + T N LL+ L  +   K+A  +F  ++            +   P
Sbjct: 444 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEP 503

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  P+ + ++ M+ GL K  +  +A ++F
Sbjct: 504 DVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMF 563

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
           + M +K  SP+V ++  ++  +CK                     +A  Y  LI GF   
Sbjct: 564 DSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKV 623

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
             ++   D+ +EM   G  PD +T  +++ ++  ++    AV + +++  S
Sbjct: 624 GNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQMS 674



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 17/288 (5%)

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L     L  D ++ R  P++  +  L+G   R++       ++ +M  K    DV + NI
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI----------------WKFCKQN 432
           +++      K   A+  F  +   G  P+V +++ ++                 + C+ N
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
              +T L+ G     R+     LL  M E G  P+ +TY  ++  M        A+ + +
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR 237

Query: 493 EMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           +M   S  KP +  Y+ I+   ++ G +     ++ EM  +G  PD  +Y  +I G  S 
Sbjct: 238 KMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            R  EA + L+EMLE+ +   V+ Y+       +  + +  +EL  +M
Sbjct: 298 GRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM 345


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 162/351 (46%), Gaps = 22/351 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ + + + + T++S+  +M   G+   + T  I +N+F   +    A ++   + 
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 174

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +    T N L+  L       EA  LFDK +   F P++ TY  L+ G C+V N  
Sbjct: 175 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 234

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M+ K  +P+V+A+N +++ L K  + ++A  LF  M  KG SP++ +Y  +I
Sbjct: 235 AAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 294

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      N  V++ ++        + I +D++  M +RG  
Sbjct: 295 HALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 354

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY AL+    ++   DEAV+++  MV  G  P + +YN+++  Y Q    +    +
Sbjct: 355 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 414

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            ++M  +G   D  +Y  LI GL    R   A     EM+  G    ++ Y
Sbjct: 415 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTY 465



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 15/209 (7%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           +N M+     P  V    +L  + K+   S  + L   M + G  P+V +  I+I  FC 
Sbjct: 100 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC- 158

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                         + RR+   + +L ++ + GC PD  T+N LI+ + ++    EA+ +
Sbjct: 159 --------------HLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHL 204

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + + +  GF+P + TY  +M    + GN     ++   M+++ C P+  +Y  +I  L  
Sbjct: 205 FDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK 264

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             +  EA+    EM+ KG+   +  YN  
Sbjct: 265 DRQVTEAFNLFSEMITKGISPDIFTYNSL 293



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 134/360 (37%), Gaps = 91/360 (25%)

Query: 337 FDKLKHRFTPNLTT-YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM------ 389
           F+++ H   P  T  +T LL    ++K+      +  +M   G  PDV   NI+      
Sbjct: 100 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCH 159

Query: 390 ----------LEGLLKIGKRSD-------------------AIKLFEVMKAKGPSPNVRS 420
                     L  LLK+G + D                   A+ LF+    +G  P+V +
Sbjct: 160 LRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVT 219

Query: 421 YTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y                      M+ K C+ N   Y  +I      R++   ++L  EM 
Sbjct: 220 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI 279

Query: 461 ERGCPPDGLTYNALI-----------------KLMKIQKMPDEAV--------------- 488
            +G  PD  TYN+LI                 +++  + MP+  V               
Sbjct: 280 TKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIA 339

Query: 489 ---RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
               +   M++ G +P + TY  +M  +      +   KV+D M+ +GC P+  SY +LI
Sbjct: 340 IAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 399

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            G     R  +A   LE+M  +G+ A  + YN     L   GR      L  +M  SG+ 
Sbjct: 400 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 459



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 23/295 (7%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D L + R     AF  F     K G + +  TYNS++  L    +++ + ++L
Sbjct: 253 IAYNTIIDSLCKDRQVTE-AFNLFSEMITK-GISPDIFTYNSLIHALCNLCEWKHVTTLL 310

Query: 269 EEM-GEKGLLSMETFKIAMNAFAAAKERKKAVA--IFELMNKYKFKAGVDTINCLLENLG 325
            EM   K + ++  F   ++A    KE   A+A  + ++M K   +  V T   L++   
Sbjct: 311 NEMVNSKIMPNVVVFSTVVDALC--KEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC 368

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                 EA  +FD + H+   PN+ +Y +L+ G+C+++ + +A  +  +M  +G   D V
Sbjct: 369 LRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTV 428

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +N ++ GL  +G+   AI LF  M A G  P++ +Y I++   CK +      +     
Sbjct: 429 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMV----- 483

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                     LLK +E      D L YN  I  M      + A  ++  +   GF
Sbjct: 484 ----------LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGF 528


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 25/378 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N +M  + R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 84  FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 143

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           K      V T   LL  L       EA  LF ++     P++ T+T L+ G CR   ++E
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR---PDVLTFTTLMNGLCREGRVVE 200

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIMI 425
           A  + + M++ G +PD + +   ++G+ K+G    A+ L   M+      PNV  Y+ +I
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK                     N   Y C+I GF    R      LL+EM ER   
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYNALI     +    EA  +Y EM+  G  P   TYN ++  + +    +    +
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M  +GC PD  ++T LI G     R  +  + L EM  +G+ A  + YN        
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 586 AGRSYVLDELAQKMRFSG 603
            G      +L+Q+M  SG
Sbjct: 441 VGDLNAALDLSQQMISSG 458



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 190/452 (42%), Gaps = 86/452 (19%)

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           G+ L H  V + L+ F    RP                +  T+ ++M+ L R  +    V
Sbjct: 160 GLCLDHR-VSEALDLFHQICRP----------------DVLTFTTLMNGLCREGRVVEAV 202

Query: 266 SMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYK-FKAGVDTINCLLEN 323
           ++L+ M E GL   + T+   ++      +   A+ +   M +    K  V   + +++ 
Sbjct: 203 ALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDG 262

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +     ++  LF +++ +   PN+ TY  ++GG+C       A R+  EM+++   P+
Sbjct: 263 LCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPN 322

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN---------- 432
           VV +N ++   +K GK  +A +L++ M  +G  PN  +Y  MI  FCKQ+          
Sbjct: 323 VVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY 382

Query: 433 ----------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI------- 475
                        +T LI G+   +R+D   +LL EM  RG   + +TYN LI       
Sbjct: 383 LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG 442

Query: 476 ----------KLMKIQKMPD------------------EAVRIYKEMVRS---------- 497
                     +++     PD                  +A+ ++K M +S          
Sbjct: 443 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPF 502

Query: 498 -GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P + TYN+++      G +    ++++EM  RG  PD  +Y+ +I GL  Q R  E
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           A +    M  K     V+ +N       +AGR
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 594



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 28/339 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 303 ELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
            LM        V T   L++   G  ++    +LL +  +     N  TY  L+ G+C V
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK--------- 412
            +L  A  +  +MI  G  PD+V  N +L+GL   GK  DA+++F+ M+           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 413 --GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P+V +Y I               LI G  N  +     +L +EM  RG  PD +T
Sbjct: 502 FNGVEPDVLTYNI---------------LICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y+++I  +  Q   DEA +++  M    F P + T+N ++  Y + G  + G +++ EM 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           RRG   D   Y  LI G         A    +EM+  G+
Sbjct: 607 RRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 68/371 (18%)

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCR 360
            E+ +K  F   + T NC++     S     AQ LL + L+ + +PN+ TY  L+  + +
Sbjct: 277 IEMQDKGIF-PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK 335

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                EA  +++EM+ +G  P+ + +N M++G  K  +   A  +F +M  KG SP+V +
Sbjct: 336 EGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFT 395

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +T +I  +C                      N   Y  LI GF     ++   DL ++M 
Sbjct: 396 FTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMI 455

Query: 461 ERGCPPDGLTYNALI----------------KLMKIQKM------------PD------- 485
             G  PD +T N L+                K M+  KM            PD       
Sbjct: 456 SSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNIL 515

Query: 486 -----------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
                      EA  +Y+EM   G  P   TY+ ++    +    +   +++  M  +  
Sbjct: 516 ICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF 575

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++  LI G     R  +  +   EM  +G+ A  + Y        + G      +
Sbjct: 576 SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALD 635

Query: 595 LAQKMRFSGKF 605
           + Q+M  SG +
Sbjct: 636 IFQEMISSGVY 646



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 33/264 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + +  T+ +++     A++ +  + +L EM  +GL++   T+   ++ F    +   A
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 447

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T N LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 448 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 507

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M +K  SPNV ++  +I  +CK                     +A +Y  LI GF   
Sbjct: 568 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 627

Query: 447 RRMDIVYDLLKEMEERGCPPDGLT 470
             ++   D+ +EM   G  PD +T
Sbjct: 628 GNINGALDIFQEMISSGVYPDTIT 651



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 56/300 (18%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G   +K L +A  ++++M+     P V+  N ++  ++++ +    I L++ M+ K 
Sbjct: 52  LRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQ 111

Query: 414 PSPNVRSYTIMIWKF--------------------------------------------- 428
              ++ S+TI+I  F                                             
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                 C+ +   +T L+ G     R+     LL  M E G  PD +TY   +  M   K
Sbjct: 172 DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGM--CK 229

Query: 483 MPD--EAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           M D   A+ + ++M   S  KP +  Y+ I+    + G +     ++ EM  +G  P+  
Sbjct: 230 MGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIV 289

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y  +IGG     R   A + L+EMLE+ +   V+ YN       + G+ +   EL  +M
Sbjct: 290 TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM 349



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 52/103 (50%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +S+L +  Q+        F+PN+ T+  L+ G+C+   + +   ++ EM  +G   D + 
Sbjct: 557 QSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 616

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           +  ++ G  K+G  + A+ +F+ M + G  P+  +   M+  F
Sbjct: 617 YITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 168/324 (51%), Gaps = 19/324 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           ++ TY  ++  L + ++ +  ++ +EEM  +G+      +   ++     ++ ++A  +F
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E M K +    V T N L+  L ++   + A  LF ++  + + P   +Y  L+ G+C+ 
Sbjct: 68  EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K+L+ A  V+++M+     P+VV +  +++GL K GK   A ++ + M  KG +PNV   
Sbjct: 128 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNV--- 184

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKI 480
                       A Y+CLI GF   RR+D  + LL++M  +G  P  +TYN L+  L + 
Sbjct: 185 ------------ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRA 232

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            K+ D A ++++ M +    PT+ TYN ++++       +   +++ EMI +GC PD  +
Sbjct: 233 DKLED-AFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAIT 291

Query: 541 YTVLIGGLISQDRSGEAYKYLEEM 564
           Y  L  GL    +  EA + +E+M
Sbjct: 292 YDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A+A  E M     K      N +L  L + +  +EA+LLF+K+ K R  PN+ TY  L+ 
Sbjct: 28  ALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLIN 87

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   +  A  ++ EM  KG+ P  V++N +++G  K      A  +F+ M       
Sbjct: 88  GLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKM------- 140

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            VRS        C  N   YT LI G     ++    ++L  M ++G  P+  TY+ LI 
Sbjct: 141 -VRSN-------CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID 192

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
              K++++ DEA ++ ++MV  G  PT+ TYN+++ S  +    E   K++  M +R C 
Sbjct: 193 GFCKVRRV-DEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCH 251

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P   +Y  L+  L    +   A++   EM+ KG     + Y+  A  L+RAG+ +   EL
Sbjct: 252 PTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQEL 311

Query: 596 AQKMRFS 602
            +KM+ +
Sbjct: 312 MEKMKLT 318



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 15/243 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TY  ++   C+ K + +A     EM  +G KPD   +N +L GL +  K  +A  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           FE M  +  +PNV +Y  +I   CK                 R++  Y+L KEM  +G  
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKA---------------WRIETAYELFKEMAGKGYV 111

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  ++YN LI     +K    A  ++ +MVRS   P + TY  ++    ++G  +   +V
Sbjct: 112 PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEV 171

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            D M+++G  P+  +Y+ LI G     R  EA+K LE+M+ +G+   V+ YN     L R
Sbjct: 172 LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 231

Query: 586 AGR 588
           A +
Sbjct: 232 ADK 234



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 17/224 (7%)

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           PD + +  ++E L K  +  DA+   E M  +G  P+               A +Y  ++
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPD---------------AFIYNFVL 51

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF 499
           +G     +++    L ++M ++   P+ +TYN LI  L K  ++ + A  ++KEM   G+
Sbjct: 52  SGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRI-ETAYELFKEMAGKGY 110

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            PT  +YN ++  + +  +    + V+D+M+R  C P+  +YT LI GL    +   A +
Sbjct: 111 VPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAE 170

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L+ M++KG+   V  Y+       +  R     +L ++M   G
Sbjct: 171 VLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 214



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++  L ++ + +    +L+ M +KG+  ++ T+   ++ F   +   +A  + 
Sbjct: 148 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLL 207

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           E M        V T N LL +L R+   ++A  LF  + + R  P + TY  LL   C  
Sbjct: 208 EQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHH 267

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           K L  A R++ EMI KG  PD + ++ +  GL + GK  +A +L E MK    +P  RS
Sbjct: 268 KQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNPFGRS 326



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           ++   +A  Y  ++      +R+D     ++EM  RG  PD   YN ++  +  ++  +E
Sbjct: 3   RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 62

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  ++++MV+    P + TYN ++    +    E   +++ EM  +G  P + SY  LI 
Sbjct: 63  ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQK 598
           G   +     A    ++M+       V+ Y      LS++G+    + VLD + +K
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK 178


>gi|15240032|ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial; Flags: Precursor
 gi|9758420|dbj|BAB08962.1| unnamed protein product [Arabidopsis thaliana]
 gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1030

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 205/452 (45%), Gaps = 29/452 (6%)

Query: 187 VIDELFSLDR------NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
           V+ E+ S+ R      +ME  L++        +V +VL+R       A RFF W   K G
Sbjct: 125 VVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDG 184

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
           F+H    YN+M+SI G AR  + +  ++ EM + G    + T+ I ++ +  AK+  K +
Sbjct: 185 FSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGL 244

Query: 300 AIFELMNKYKFKAGVDTINCLLENL---GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            +FE M K  F+      N ++ +L   GR  L  E     + ++   T  L TY +LL 
Sbjct: 245 LVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALE--FYKEMMEKGITFGLRTYKMLLD 302

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
              + + +     + ++M+      +  A   +L+     GK  +A++L   +K K    
Sbjct: 303 CIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCL 362

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           + + + I++   C+ N  V    I     RR++D                D   Y  +I 
Sbjct: 363 DAKYFEILVKGLCRANRMVDALEIVDIMKRRKLD----------------DSNVYGIIIS 406

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               Q    +A+  ++ + +SG  P + TY  IM+  F+   +E G  +++EMI  G  P
Sbjct: 407 GYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEP 466

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  + T ++ G + Q+R  EA+K    M EKG+K     Y+ F  +L R+ R   + ++ 
Sbjct: 467 DSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIF 526

Query: 597 QKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
            +M  S K  + + +  W  ++  +   K++I
Sbjct: 527 NQMHAS-KIVIRDDIFSWVISSMEKNGEKEKI 557



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 182/419 (43%), Gaps = 21/419 (5%)

Query: 174  STADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFC 233
            S  D  +++ +C+V+      +R  EA L++  +  +  LVV+VL   +       RFF 
Sbjct: 608  SAVDKMDVQEICRVLSSSRDWERTQEA-LEKSTVQFTPELVVEVLRHAKIQGNAVLRFFS 666

Query: 234  WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAA 292
            W G + G+ HNS  YN  + + G  + F+ M S+  EM  +G L++ +T+ I +  +   
Sbjct: 667  WVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRT 726

Query: 293  KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK---LPKEAQLLFDKLKHRFTPNLT 349
                 A+  F+ M          T  CL+  L   K   + +  +   + ++  F P+  
Sbjct: 727  GLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIRSGFVPDRE 786

Query: 350  TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
                 LG  C V N  +A    + +   GF P  VA++I +  L +IGK  +A  L E+ 
Sbjct: 787  LVQDYLGCLCEVGNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCRIGKLEEA--LSELA 843

Query: 410  KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              +G    +  YT             Y  ++ G   R  +    D +  M+E G  P   
Sbjct: 844  SFEGERSLLDQYT-------------YGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVH 890

Query: 470  TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
             Y +LI     +K  ++ +   ++M     +P++ TY  ++  Y   G  E     +  M
Sbjct: 891  VYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNM 950

Query: 530  IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              RG  PD  +Y+  I  L    +S +A K L EML+KG+    +++      L+R G+
Sbjct: 951  EERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGK 1009


>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 523

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 170/363 (46%), Gaps = 31/363 (8%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           AG  P  A +   + +     G+A +F+   + +  M  +G+L+     I M  +AAA E
Sbjct: 136 AGSPPAEAWHLAIWAA-----GKAGRFDLAWAAVRRMLHRGVLTRRAMIIVMERYAAASE 190

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            +KA+  F++M K+K +A       LL  L +SK  ++A+ L    K  F      + ++
Sbjct: 191 LEKALKTFDVMEKFKVQADQAVFYSLLRALCKSKNIEDAEELLLMRKKFFPLTAEGFNII 250

Query: 355 LGGWCR-VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L GWC  + ++ EA RVW EM      PD  ++ +M+    K+G   D +++++ MK +G
Sbjct: 251 LDGWCNIIIDVAEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKRG 310

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            +P +  Y  +++   ++                    N   Y  +I       ++D   
Sbjct: 311 WTPGIGVYNSLVYVLTRENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEAR 370

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            ++ +M  +G  P  LTY+A +K    Q+  DE +++ ++M  +G  P   T+ M++  +
Sbjct: 371 IMMGDMIMKGIVPTILTYHAFLK----QEGVDETLQLLRKMKENGCGPNSDTFLMLIDKF 426

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA-P 572
            Q        +VW+EMIR    P  + Y  +I GL+       A +Y +EM  KG  + P
Sbjct: 427 IQANESGNALRVWNEMIRYDISPAYSHYMAVIQGLVKHGCIPRALEYYDEMKAKGFASDP 486

Query: 573 VLD 575
           +LD
Sbjct: 487 ILD 489



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 20/219 (9%)

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVR---SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           K   ++D    + +++A   S N+       +M  KF    A  +  ++ G+ N     I
Sbjct: 203 KFKVQADQAVFYSLLRALCKSKNIEDAEELLLMRKKFFPLTAEGFNIILDGWCN-----I 257

Query: 452 VYDL------LKEMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIH 504
           + D+       KEM      PDG +Y  ++    K+  + D  +R+Y EM + G+ P I 
Sbjct: 258 IIDVAEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFD-TLRVYDEMKKRGWTPGIG 316

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            YN ++    +    +  +K++ ++I  G   +  +Y  +I  L    +  EA   + +M
Sbjct: 317 VYNSLVYVLTRENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMGDM 376

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + KG+   +L Y+ F   L + G    L +L +KM+ +G
Sbjct: 377 IMKGIVPTILTYHAF---LKQEGVDETL-QLLRKMKENG 411


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 173/385 (44%), Gaps = 35/385 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQ--FETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           G + N  +YN++  ILG  R+        + +EM + G   +  TF I M+ +    + +
Sbjct: 397 GISPNVVSYNNI--ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIE 454

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A +IF  M          T+  +++ L ++    E + LF+K +   F P    Y  ++
Sbjct: 455 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTII 514

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+ +  N+  A  V+ EM + G  P  V +  +++G  K      A+KL   MK KG  
Sbjct: 515 DGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLK 574

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            ++++Y  +I  FCK               RR M   ++LL E+   G  P+   YN++I
Sbjct: 575 MDIKAYGTLIDGFCK---------------RRDMKSAHELLNELRGAGLSPNRFIYNSMI 619

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
              K     +EA+ +YK+MV  G    + TY  ++    ++G       +  EM+ +G  
Sbjct: 620 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 679

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG-------- 587
           PDD ++TVLI GL ++ +   A K LE+M  K M   VL YN   A   + G        
Sbjct: 680 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 739

Query: 588 ------RSYVLDELAQKMRFSGKFE 606
                 R  V D +   +  +GKF+
Sbjct: 740 HDEMLDRGLVPDNITYDILVNGKFK 764



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 156/365 (42%), Gaps = 16/365 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N     S+M          + + ++ E+ E GL+  + T+ + ++        +KA
Sbjct: 258 GKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKA 317

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
              +  M     ++ V ++N +LE   + +  + A  +F+        N+ T+  LL   
Sbjct: 318 FEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWL 377

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + EA  +W+E+I KG  P+VV++N ++ G  +    + A K+++ M   G +PN 
Sbjct: 378 CKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNA 437

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            ++TI               L+ G+  +  ++  + +   M++    P   T   +IK +
Sbjct: 438 VTFTI---------------LMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGL 482

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                  E   ++ + V  GF PT   YN I+  + + GN  +   V+ EM   G  P  
Sbjct: 483 CKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPST 542

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT LI G    +    A K L +M  KG+K  +  Y        +        EL  +
Sbjct: 543 VTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNE 602

Query: 599 MRFSG 603
           +R +G
Sbjct: 603 LRGAG 607



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 52/286 (18%)

Query: 298 AVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH----RFTPNLTTYT 352
           A+  FE +  K +F    D +  LL  L  S     AQ LFD+       RF+       
Sbjct: 98  ALKYFERIKKKIEFAKCTDAVCILLLILTNSAETHRAQYLFDQFASGKSVRFS------- 150

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
                 C +  L+E  +++N      F  D+   NI+           +A + F   KA+
Sbjct: 151 ------CLMDRLVECTKLYN------FPLDIQEGNIL-----------EAEQHFLQAKAR 187

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTY 471
           G   +  +Y+I +   C +  + Y                  LL+EM   G  PP+G T+
Sbjct: 188 GVELDQEAYSIFVHLLCLKPNSGYA---------------LSLLREMRAAGWIPPEG-TF 231

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            ++I     +    EA+R+  +MV  G    +     +MK Y   GN      + +E+  
Sbjct: 232 TSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISE 291

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            G  P+  +Y+VLI G        +A+++  EM  KG+++ V   N
Sbjct: 292 SGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLN 337


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 193/463 (41%), Gaps = 95/463 (20%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  N  TYN++++ L +A + E   +M+E M +KG+   + T+ + ++AF  A    +A
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD--KLKHRFTPNLTTYTVLLG 356
           + +   M        V T N +++ L +S    EA  +FD   LKH   P+  TY  L+ 
Sbjct: 450 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLID 509

Query: 357 GW-------------------------CRVKNLMEAG------RVWNEMIDKGFKPDVVA 385
           G                          C +  L + G      +V+N M++    PD V 
Sbjct: 510 GLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVT 569

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
            NI++ G  K G    A  LFE M AK   P+V ++  +I   CK               
Sbjct: 570 FNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 629

Query: 432 ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI---------- 475
                 N   Y  L+ G     R++     L+EM   GC PD +TY +L+          
Sbjct: 630 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 689

Query: 476 -KLMKIQKM------PD------------------EAVRIYKEMVRSGFKPTIHTYNMIM 510
             L  + ++      PD                  +A+ + +EMV  G  P + TYN ++
Sbjct: 690 DALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLI 749

Query: 511 KSYFQTGNYEMGRKVWDEM---IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            S  + G+ E  R++  +M   + R C P+  +Y+VLI GL    R  EA + ++EM+ K
Sbjct: 750 DSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRK 809

Query: 568 GMKA-P-VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
                P ++ YN F   L +        EL + +R  G   VS
Sbjct: 810 SCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLR-DGSLRVS 851



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 188/438 (42%), Gaps = 35/438 (7%)

Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
           DPR I        E     +++ A L  C   L  ++   +L +         +F+ WA 
Sbjct: 47  DPRSISEAL----ESLRPGQSVVAALRGCKGRLHPSVAAAILAQLDGNAELGTQFYDWAA 102

Query: 237 DKPGFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
             PGF H   ++N  +++L +    A+  +   S L         +  T   A   + A 
Sbjct: 103 ALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRA--TYKAG 160

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTT 350
            + ++ +  F  +        V   N +L++L R+     A  +F  +  +    P + T
Sbjct: 161 GDVERTLGFFRRIRSSSRS--VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVT 218

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y  ++ G C+   L     ++ E++++G  PDVV +N +++ L K G   +A +L   M 
Sbjct: 219 YNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMS 278

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP--PDG 468
           ++   PNV +Y+++I   CK                 R+D   +L++EM  + C   P+ 
Sbjct: 279 SRSCVPNVVTYSVLINGLCKVG---------------RIDEARELIQEMTRKSCDVLPNI 323

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSG---FKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           +TYN+ +  +  Q M  EA  + + + R G     P   T++ ++    + G  +    V
Sbjct: 324 ITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSV 382

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +D+MI  G  P+  +Y  L+ GL   D+   A+  +E M++KG+   V+ Y+       +
Sbjct: 383 FDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCK 442

Query: 586 AGRSYVLDELAQKMRFSG 603
           A R     EL   M   G
Sbjct: 443 ASRVDEALELLHGMASRG 460



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 165/380 (43%), Gaps = 53/380 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++  L +A   E    +  +M  +  + ++ T+ + +N         +A  + + M
Sbjct: 253 TYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEM 312

Query: 306 NKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLTTYTVLLGGWCR 360
            +        + T N  L+ L +  +  EA  L   L+    R +P+  T++ L+ G C+
Sbjct: 313 TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCK 372

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              + EA  V+++MI  G+ P+V+ +N ++ GL K  K   A  + E M  KG +P+V +
Sbjct: 373 CGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT 432

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           Y++++  FCK +               R+D   +LL  M  RGC P+ +T+N++I  +  
Sbjct: 433 YSVLVDAFCKAS---------------RVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 477

Query: 481 QKMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC 534
                EA +++ +M ++ G  P   TY  ++   F+TG       + D M         C
Sbjct: 478 SDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNC 537

Query: 535 C--------------------------PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           C                          PD  ++ +LI G        +A    EEM+ K 
Sbjct: 538 CINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 597

Query: 569 MKAPVLDYNKFAADLSRAGR 588
           ++  V+ +      L +AG+
Sbjct: 598 LQPDVMTFGALIDGLCKAGQ 617



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 164/359 (45%), Gaps = 24/359 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  TYN+++  L ++ + E     LEEM   G +    T+   + A   A     A
Sbjct: 632 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   +  + +     T N L++ L +S   ++A  + +++  +   P++ TY  L+  
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDS 751

Query: 358 WCRVKNLMEAGRVWNEM---IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
            C+  +L EA R+  +M   + +   P+VV +++++ GL K+G+  +A +L + M  K  
Sbjct: 752 LCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSC 811

Query: 415 S--PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG--CPPDGLT 470
              PN+ +Y   +   CKQ+     C               +L++ + +      PD +T
Sbjct: 812 DVLPNIITYNSFLDGLCKQSMMAEAC---------------ELMRSLRDGSLRVSPDTVT 856

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           ++ LI  +      DEA  ++ +M+  G+ P + TYN++M    +T   E    + + M+
Sbjct: 857 FSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMV 916

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            +G  PD  +Y+VL+          EA + L  M  +G    V+ +N     L ++ +S
Sbjct: 917 DKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQS 975



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 165/380 (43%), Gaps = 53/380 (13%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEK----GLLSMETFKIAMNAFAAAKERKKAVAIF 302
            TYN+++  L +A   E    +  +M  +     + ++ T+ + +N         +A  + 
Sbjct: 744  TYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELI 803

Query: 303  -ELMNK-YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLTTYTVLLGG 357
             E+M K       + T N  L+ L +  +  EA  L   L+    R +P+  T++ L+ G
Sbjct: 804  QEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDG 863

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             C+     EA  V+++MI  G+ P+VV +N+++ GL K  K   A  + E M  KG +P+
Sbjct: 864  LCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPD 923

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            V +Y++++  FCK +                +D   +LL  M  RGC P+ +T+N++I  
Sbjct: 924  VITYSVLVDAFCKAS---------------HVDEALELLHGMASRGCTPNVVTFNSIIDG 968

Query: 478  MKIQKMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR---- 532
            +       EA +++ +M ++ G  P   TY  ++   F+TG       + D M       
Sbjct: 969  LCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYA 1028

Query: 533  -GCC-----------------------PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
              CC                       PD  ++ +LI G        +A    EEM+ K 
Sbjct: 1029 FNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 1088

Query: 569  MKAPVLDYNKFAADLSRAGR 588
            ++  V+ +      L +AG+
Sbjct: 1089 LQPDVMTFGALIDGLCKAGQ 1108



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 168/384 (43%), Gaps = 27/384 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVA 300
           N  TYNS +  L +         ++  + +  L       TF   ++      +  +A +
Sbjct: 322 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 381

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +F+ M    +   V T N L+  L ++   + A  + + +  +  TP++ TY+VL+  +C
Sbjct: 382 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 441

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNV 418
           +   + EA  + + M  +G  P+VV  N +++GL K  +  +A ++F+ M  K G  P+ 
Sbjct: 442 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDK 501

Query: 419 RSYTIMIWKFCKQNAA----------------VYTCLITGF---GNRRRMDIVYDLLKEM 459
            +Y  +I    +   A                 + C I G    G+  R   VY+ + E+
Sbjct: 502 ITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLEL 561

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           E     PD +T+N LI         ++A  +++EMV    +P + T+  ++    + G  
Sbjct: 562 ELV---PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 618

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E  R + D M   G  P+  +Y  L+ GL    R  EA ++LEEM+  G     + Y   
Sbjct: 619 EAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 678

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
              L RA R+    +L  +++  G
Sbjct: 679 VYALCRASRTDDALQLVSELKSFG 702



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 31/222 (13%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            G+  N  TYN +M+ L +  + E   +M+E M +KG+   + T+ + ++AF  A    +A
Sbjct: 884  GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEA 943

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK--LKHRFTPNLTTYTVLLG 356
            + +   M        V T N +++ L +S    EA  +FD   LKH   P+  TY  L+ 
Sbjct: 944  LELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLID 1003

Query: 357  G-----W--------------------CRVKNLMEAG---RVWNEMIDKGFKPDVVAHNI 388
            G     W                    C +  L + G   R  + M++    PD V  NI
Sbjct: 1004 GLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNI 1063

Query: 389  MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
            ++ G  K G    A  LFE M AK   P+V ++  +I   CK
Sbjct: 1064 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 1105



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 23/253 (9%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV-- 435
           GFK  + + N  L  L+K G  + AI LF         PN  +Y+ ++    K    V  
Sbjct: 106 GFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVER 165

Query: 436 -----------------YTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKL 477
                            Y  ++             ++ + EM   G  P  +TYN +I  
Sbjct: 166 TLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIING 225

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +         + +++E+V  G  P + TYN ++ S  + G+ E  R++  +M  R C P+
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA-P-VLDYNKFAADLSRAGRSYVLDEL 595
             +Y+VLI GL    R  EA + ++EM  K     P ++ YN F   L +   +    EL
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACEL 345

Query: 596 AQKMRFSGKFEVS 608
            + +R  G   VS
Sbjct: 346 MRSLR-DGSLRVS 357


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 174/370 (47%), Gaps = 19/370 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  +  ++  M   G+   + T+   ++        ++A  +FE 
Sbjct: 254 TYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEE 313

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S+ PKEA  +  +++   F+P++ TY  L+  + R   
Sbjct: 314 MKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGL 373

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  + ++M++KG KPDV  +  +L G  K G    A+++F  M+A G          
Sbjct: 374 LREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAG---------- 423

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N   +  LI   GNR R   +  + +E+E   C PD +T+N L+ +     M
Sbjct: 424 -----CKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGM 478

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   ++KEM R+GF P   T+N ++ +Y + G+++    V+  M+  G  PD +SY  
Sbjct: 479 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNA 538

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K   EM +   K   L Y       + +     +  LA+++ +SG
Sbjct: 539 VLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEI-YSG 597

Query: 604 KFEVSNVLAR 613
             E   VL +
Sbjct: 598 LTEPVPVLLK 607



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 171/412 (41%), Gaps = 63/412 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF+ +  TYNS++S   R       + + ++M EKG+   + T+   ++ F  A   + A
Sbjct: 353 GFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPA 412

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + IF  M     K  + T N L++  G      E   +F++++     P++ T+  LL  
Sbjct: 413 MRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAV 472

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +     E   V+ EM   GF P+    N ++    + G    A+ +++ M   G +P+
Sbjct: 473 FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPD 532

Query: 418 VRSYTIMI--------WKF------------CKQNAAVYTCLITGFGNRRRMDIVY---- 453
           + SY  ++        W+             CK N   Y  L+  + N + ++ ++    
Sbjct: 533 LSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAE 592

Query: 454 ------------------------DLLKEME------ERGCPPDGLTYNALIKLMKIQKM 483
                                   DLL E E      ++   PD  T NA+I +   ++M
Sbjct: 593 EIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQM 652

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             +A  I   M  SGF P++ TYN +M  + ++ N+E   +V  E++ +G  PD  SY  
Sbjct: 653 VAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNT 712

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           +I       R  +A +    M   G+   V+ YN F A       SY  D L
Sbjct: 713 VIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVA-------SYAADSL 757



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 51/335 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF+ +  T+N+++ + G++R+ +  + +L+EM   G                        
Sbjct: 318 GFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSG------------------------ 353

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
                     F   + T N L+    R  L +EA  L D++  +   P++ TYT LL G+
Sbjct: 354 ----------FSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGF 403

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +      A R++ EM   G KP++   N +++     G+ ++ +K+FE ++    +P+ 
Sbjct: 404 EKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPD- 462

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
               I+ W            L+  FG       V  + KEM+  G  P+  T+N LI   
Sbjct: 463 ----IVTW----------NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAY 508

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                  +A+ +YK M+ +G  P + +YN ++ +  + G +E   KV+ EM    C P++
Sbjct: 509 SRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNE 568

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +Y  L+    +  +  E    L E +  G+  PV
Sbjct: 569 LTYCSLLHAY-ANSKEIERMHTLAEEIYSGLTEPV 602



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 27/284 (9%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N +   V++    +   +  A  + N +   GF  DV A+  ++      G+  DA+ +F
Sbjct: 181 NCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVF 240

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAA---------------------VYTCLITGFGN 445
           + M+ +G  P + +Y +++  + K                          Y  LI+    
Sbjct: 241 KKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRR 300

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
               +    + +EM+  G  PD +T+N L+ +    + P EA+ + KEM  SGF P+I T
Sbjct: 301 GSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVT 360

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++ +Y + G      ++ D+M+ +G  PD  +YT L+ G         A +   EM 
Sbjct: 361 YNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMR 420

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
             G K  +  +N         GR       A+ M+   + E+ N
Sbjct: 421 AAGCKPNICTFNALIKMHGNRGR------FAEMMKVFEEIEICN 458



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 154/337 (45%), Gaps = 26/337 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++++ G+      +  + +EM   G +   +TF   ++A++     ++A+A+++ M
Sbjct: 465 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRM 524

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      + + N +L  L R  L ++++ +F ++K  R  PN  TY  LL  +   K +
Sbjct: 525 LEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEI 584

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI----KLFEVMKAKGPSPNVRS 420
            E      E I  G    V    ++L+ L+ +  + D +      FE +K KG SP++ +
Sbjct: 585 -ERMHTLAEEIYSGLTEPV---PVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLST 639

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
              MI        A+Y       G R+ +    ++L  M E G  P   TYN+L+ +   
Sbjct: 640 LNAMI--------AIY-------GRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSR 684

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +  + +  + KE++  G KP + +YN ++ +Y + G  +   +++  M   G  PD  +
Sbjct: 685 SENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVIT 744

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           Y   +    +     +A   +  M++ G K     YN
Sbjct: 745 YNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYN 781



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 139/331 (41%), Gaps = 22/331 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + GF     T+N+++S   R   F+  +++ + M E G+   + ++   + A A     +
Sbjct: 491 RAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWE 550

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTV 353
           ++  +F  M   + K    T   LL     SK  +    L +++    T   P L    V
Sbjct: 551 QSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLV 610

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+   C +  LME    + E+  KG  PD+   N M+    +    + A ++   M   G
Sbjct: 611 LVNSKCDL--LMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESG 667

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            SP++ +Y  +++   +              N  R +   ++LKE+  +G  PD ++YN 
Sbjct: 668 FSPSLATYNSLMYMHSRSE------------NFERSE---EVLKEILAKGLKPDLISYNT 712

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I          +A RI+  M   G  P + TYN  + SY     +E    V   MI+ G
Sbjct: 713 VIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHG 772

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           C  + N+Y  ++ G     R  +A  ++  +
Sbjct: 773 CKRNQNTYNSIVDGYCKHSRRADAIMFVSSL 803



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ GF+ +  TYNS+M +  R+  FE    +L+E+  KGL   + ++   + A+      
Sbjct: 664 NESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRM 723

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVL 354
           K A  IF  M  Y     V T N  + +     L ++A  ++   +KH    N  TY  +
Sbjct: 724 KDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSI 783

Query: 355 LGGWCR 360
           + G+C+
Sbjct: 784 VDGYCK 789


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 195/452 (43%), Gaps = 59/452 (13%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           L+ C ++ SH  VV VL R  H    +  +F    +   F H   TY +M+  LGR  + 
Sbjct: 34  LNVCPVSESH--VVKVL-RQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEM 90

Query: 262 ETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           + +  +L++M  E    S E F+  +  +  +   ++ + +F  + ++  +  V   N +
Sbjct: 91  DGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLV 150

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG- 378
           L+ L    L K    L++ +K     PN+ TY VLL   C+   +  A ++  EM +KG 
Sbjct: 151 LDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGC 210

Query: 379 -----------------------------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
                                        F+P V  +N ++ G+ K  +  +A  L   M
Sbjct: 211 DPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEM 270

Query: 410 KAKGPSPNVRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRM 449
             +G  PNV SY+ +I                     + C+ N   +T LI GF  R R+
Sbjct: 271 VDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRV 330

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
                L   M   G  P+ + YN LI  +      DEA+ ++ +M +   +P + TY+ I
Sbjct: 331 GDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTI 390

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + ++G+     + W++MI  GC P+   YT ++  L       +A+  ++ M+  G 
Sbjct: 391 IYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGC 450

Query: 570 KAPVLDYNKFAADLSRAGRSY----VLDELAQ 597
              V+ +N F   L RAGR      VLD++ +
Sbjct: 451 PPTVITFNNFIKGLCRAGRVEWAMNVLDQMEK 482



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 166/386 (43%), Gaps = 27/386 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  TYN ++  L +  + +    +L EM  KG    + ++   +++     +  KA
Sbjct: 174 GLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKA 233

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +       KF+  V   N L+  + +    KEA  L +++  R   PN+ +Y+ ++  
Sbjct: 234 REL-----AMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISC 288

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              + N+  +  V+  M  +G +P+V     +++G    G+  DA+ L+ +M  +G SPN
Sbjct: 289 LSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPN 348

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I   C                    + N   Y+ +I GF     +    +   
Sbjct: 349 VVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWN 408

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   GC P+ + Y  ++ ++    M D+A  +   M+  G  PT+ T+N  +K   + G
Sbjct: 409 KMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAG 468

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    V D+M +  C P+  +Y  L+ GL   +   EA   + E+ E+ ++   + YN
Sbjct: 469 RVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYN 528

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                 S  G    + +L  KM  +G
Sbjct: 529 TIMYGFSFNGMHQQVLQLLGKMLVNG 554



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 114/502 (22%), Positives = 215/502 (42%), Gaps = 46/502 (9%)

Query: 127 HNLATNILDSNCVNYRNVSSVTDDNQDSDGEC----DGNNSESEITSVSYKSTADPREIE 182
           +N+ +  L+ N   Y  +      N   DG C    + +N   +   VSY +      I 
Sbjct: 168 NNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTV-----IS 222

Query: 183 RVCKV--IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
            +CK+  +D+   L    E V     + + + L+  V +  R   + AF       D+ G
Sbjct: 223 SMCKLGDVDKARELAMKFEPV-----VPVYNALIHGVCKECRF--KEAFDLMNEMVDR-G 274

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
              N  +Y++++S L      E  +++   M  +G   +++TF   +  F        AV
Sbjct: 275 VDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAV 334

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGW 358
            ++ LM +      V   N L+  L       EA  +++++ K    PN+TTY+ ++ G+
Sbjct: 335 GLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGF 394

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +  +L+ A   WN+MI+ G +P+VV +  M++ L ++     A  L + M + G  P V
Sbjct: 395 AKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTV 454

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            ++   I   C+                     N   Y  L+ G            L++E
Sbjct: 455 ITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRE 514

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           +EER    D +TYN ++       M  + +++  +M+ +G K    T N  + +Y + G 
Sbjct: 515 LEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGK 574

Query: 519 YEMGRKVWDEM-IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +   KV D +   +    D  ++T+++ G+ +   + EA  YL EML++G+   +  +N
Sbjct: 575 VKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWN 634

Query: 578 ----KFAADLSRAGRSYVLDEL 595
                F + L   G   +LD++
Sbjct: 635 VLVRGFFSKLGHMGPIRILDDI 656



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           K     Y  +I   G    MD V  LL++M+    P     +  +IK  +   + ++ ++
Sbjct: 71  KHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLK 130

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++  +   G +P++  YN+++ +      ++M   +++ M   G  P+  +Y VL+  L 
Sbjct: 131 MFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALC 190

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
              +   A K L EM  KG     + Y    + + + G      ELA  M+F     V N
Sbjct: 191 QNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELA--MKFEPVVPVYN 248

Query: 610 VL 611
            L
Sbjct: 249 AL 250


>gi|15220166|ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80550, mitochondrial; Flags: Precursor
 gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein; 31926-33272 [Arabidopsis thaliana]
 gi|332198297|gb|AEE36418.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 448

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 184/382 (48%), Gaps = 30/382 (7%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-- 271
           V + L  + +  + A  FF W   + GF H + T+N ++ ILG+  +FE   +++  M  
Sbjct: 50  VCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIG 109

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
             + + +  TF+I    +  A   ++A+  ++ ++ +  +      N L++ L   K   
Sbjct: 110 NTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYN-LVDALCEHKHVV 168

Query: 332 EAQ-LLFDK--LKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           EA+ L F K  + + F+  N   + ++L GW ++    +    W +M  +G   D+ +++
Sbjct: 169 EAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYS 228

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF------------------- 428
           I ++ + K GK   A+KL++ MK++    +V +Y  +I                      
Sbjct: 229 IYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRER 288

Query: 429 -CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
            C+ N A +  +I       RM   Y +L EM +RGC PD +TY  L    +++K P E 
Sbjct: 289 GCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFS--RLEK-PSEI 345

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + ++  M+RSG +P + TY M+M+ + + G  +    VW  M   G  PD  +Y  +I  
Sbjct: 346 LSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDA 405

Query: 548 LISQDRSGEAYKYLEEMLEKGM 569
           LI +     A +Y EEM+E+G+
Sbjct: 406 LIQKGMLDMAREYEEEMIERGL 427



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN+++  +G ++  E  + +  EM E+G   ++ T    +         + A  + + M
Sbjct: 261 AYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEM 320

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            K   +    T  CL   L +   P E   LF ++ +    P + TY +L+  + R   L
Sbjct: 321 PKRGCQPDSITYMCLFSRLEK---PSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFL 377

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                VW  M + G  PD  A+N +++ L++ G    A +  E M  +G SP  R
Sbjct: 378 QPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSPRRR 432


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 178/391 (45%), Gaps = 38/391 (9%)

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR-QFETMVSMLEEM-GEKGLLSMETFKI 284
           P+F FF W     G    S  Y   +S  G +  + +  V++  EM   +   S+  F  
Sbjct: 30  PSFSFF-WRRAFSG--KTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSK 86

Query: 285 AMNAFAAAKERKKAVAIFELM-------NKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
            ++A A   +    +++ E M       N Y +      INC      RS+LP    +L 
Sbjct: 87  LLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI---LINCFCR---RSQLPLALAVLG 140

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
             +K  + PN+ T + LL G+C  K + EA  + ++M   G++P+ V  N ++ GL    
Sbjct: 141 KMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN 200

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYT 437
           K S+A+ L + M AKG  P++ +Y +++   CK+                       +YT
Sbjct: 201 KASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYT 260

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            +I G    + MD   +L KEME +G  P+ +TY++LI  +       +A R+  +M+  
Sbjct: 261 TIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
              P + T++ ++ ++ + G      K++DEM++R   P   +Y+ LI G    DR  EA
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +  E M+ K     V+ Y+       +A R
Sbjct: 381 KQMFEFMVSKHCFPDVVSYSTLIKGFCKAKR 411



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 171/378 (45%), Gaps = 22/378 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           ++ ++S + +  +F+ ++S+ E+M   G+  +  T+ I +N F    +   A+A+   M 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMM 143

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++  + T++ LL     SK   EA  L D++    + PN  T+  L+ G        
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  + + M+ KG +PD+V + +++ GL K G    A  L   M+     P V  YT +I
Sbjct: 204 EAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTII 263

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK                     N   Y+ LI+   N  R      LL +M ER   
Sbjct: 264 DGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 323

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  T++ALI     +    EA ++Y EMV+    P+I TY+ ++  +      +  +++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ M+ + C PD  SY+ LI G     R  E  +   EM ++G+    + Y      L +
Sbjct: 384 FEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443

Query: 586 AGRSYVLDELAQKMRFSG 603
           AG   +  E+ ++M   G
Sbjct: 444 AGDCDMAQEIFKEMVSDG 461



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 169/351 (48%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  N+ T+N+++  L    +    V++++ M  KG    + T+ + +N      +   A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M + K + GV     +++ L ++K   +A  LF +++ +   PN+ TY+ L+  
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI++   PDV   + +++  +K GK  +A KL++ M  +   P+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+ +I  FC  +               R+D    + + M  + C PD ++Y+ LIK 
Sbjct: 361 IVTYSSLINGFCMHD---------------RLDEAKQMFEFMVSKHCFPDVVSYSTLIKG 405

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               K  DE + +++EM + G      TY  +++  FQ G+ +M ++++ EM+  G  P+
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y  L+ GL    +  +A    E +    M+  +  YN     + +AG+
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 175/385 (45%), Gaps = 32/385 (8%)

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
           D  F L   ME    E G+ L +  ++D L + +H    A   F     K G   N  TY
Sbjct: 238 DLAFILLNKMEQGKLEPGV-LIYTTIIDGLCKNKHMD-DALNLFKEMETK-GIRPNVVTY 294

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +S++S L    ++     +L +M E+ +   + TF   ++AF    +  +A  +++ M K
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLM 365
                 + T + L+          EA+ +F+ +  KH F P++ +Y+ L+ G+C+ K + 
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVSYSTLIKGFCKAKRVD 413

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   ++ EM  +G   + V +  +++GL + G    A ++F+ M + G  PN+ +Y  ++
Sbjct: 414 EGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + YN +I     +   +EA  ++KEM   G  P    YN ++++  + G+ E   ++
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLIS 550
             EM  R C    ++ T+   GL++
Sbjct: 594 IKEM--RSCGFAGDASTI---GLVT 613


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 181/393 (46%), Gaps = 29/393 (7%)

Query: 216 DVLERFRHAR-RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE- 273
           D+++  R  + RPAF  +     K G             +L +A + +  V + E++ + 
Sbjct: 31  DIIQTMRKFKFRPAFSAYTILIGKVGLML------LFPWVLCKANRLDEAVELFEQLEQN 84

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI---NCLLENLGRSKLP 330
           + +     +   +  + +A +  +A   + L+ + K K  + ++   NC+L  LG+ +  
Sbjct: 85  RKVPCAYAYNTMIMGYGSAGKFDEA---YGLLERQKAKGSIPSVIAYNCILTCLGKKRRV 141

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +EA  +F+++K    PN+ TY +L+   CR   L  A  + ++M   G  P+V+  NIM+
Sbjct: 142 EEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMI 201

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
           + L K  K  +A  +FE M  K                C  NA  ++ LI G G   R+D
Sbjct: 202 DRLCKAQKLEEACSIFEGMDDK---------------VCTPNAVTFSSLIDGLGKCGRVD 246

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             Y L ++M + G  P  + Y +LI+        ++  +IYKEMV +G  P +   N  M
Sbjct: 247 DAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYM 306

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
              F+ G  E GR ++ E+   G  PD  SY++LI GL+    + E Y+    M E+G  
Sbjct: 307 DCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCV 366

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                YN       ++G+     +L ++M+  G
Sbjct: 367 LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 399



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 186/433 (42%), Gaps = 93/433 (21%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            YN +++ LG+ R+ E  + + EEM    + ++ T+ I ++      +   A+ I + M 
Sbjct: 127 AYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDME 186

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGGWCR----- 360
           +      V T+N +++ L +++  +EA  +F+ +  +  TPN  T++ L+ G  +     
Sbjct: 187 RAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVD 246

Query: 361 ------------------------VKNLMEAGR------VWNEMIDKGFKPDVVAHNIML 390
                                   +++  + GR      ++ EM+  G  PD+   N  +
Sbjct: 247 DAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYM 306

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA---------------- 434
           + + K G+      LF  + A G  P+ RSY+I+I    K   A                
Sbjct: 307 DCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCV 366

Query: 435 ----VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVR 489
                Y  +I GF    +++  Y LL+EM+ +G PP  +TY ++I  L KI ++ DEA  
Sbjct: 367 LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRL-DEAYM 425

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG---------------- 533
           +++E   +G K  +  Y+ ++  + + G  +    + +E++++G                
Sbjct: 426 LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 485

Query: 534 -------------------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
                              C P+  +Y++LI GL    +  +A+ + +EM + G+K   +
Sbjct: 486 KAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTI 545

Query: 575 DYNKFAADLSRAG 587
            Y    + L++AG
Sbjct: 546 TYTTMISGLAKAG 558



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 168/383 (43%), Gaps = 59/383 (15%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ T++S++  LG+  + +   S+ E+M + G +     +   + +F     ++    I+
Sbjct: 228 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIY 287

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRV 361
           + M        +  IN  ++ + ++   ++ + LF ++  H F P+  +Y++L+ G  + 
Sbjct: 288 KEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 347

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               E   ++  M ++G   D  A+N +++G  K GK + A +L E MK KG  P V +Y
Sbjct: 348 GLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTY 407

Query: 422 TIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I                        K N  VY+ LI GFG   R+D  Y +++E+ +
Sbjct: 408 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 467

Query: 462 RG-----------------------------------CPPDGLTYNALIK-LMKIQKMPD 485
           +G                                   CPP+ +TY+ LI  L +++K  +
Sbjct: 468 KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKF-N 526

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A   ++EM + G KP   TY  ++    + GN      ++      G  PD  SY  +I
Sbjct: 527 KAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMI 586

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
            GL S +++ +AY   EE   KG
Sbjct: 587 EGLSSANKAMDAYALFEETRLKG 609



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 27/295 (9%)

Query: 320 LLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG--------GW--CRVKNLMEAG 368
           L+ N  +S+  +EA  +   + K +F P  + YT+L+G         W  C+   L EA 
Sbjct: 16  LVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAV 75

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
            ++ ++      P   A+N M+ G    GK  +A  L E  KAKG  P+V +        
Sbjct: 76  ELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIA-------- 127

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                  Y C++T  G +RR++    + +EM +R   P+  TYN LI ++  +   + A+
Sbjct: 128 -------YNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAAL 179

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            I  +M R+G  P + T N+++    +    E    +++ M  + C P+  +++ LI GL
Sbjct: 180 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 239

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               R  +AY   E+ML+ G     + Y        + GR     ++ ++M  +G
Sbjct: 240 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 294



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N   Y+S++   G+  + +    ++EE+ +KGL  ++ T+   ++A   A+E  +A
Sbjct: 434 GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 493

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           +  F+ M   K      T + L+  L R +   +A + + ++ K    PN  TYT ++ G
Sbjct: 494 LICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISG 553

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +  N++EA  +++     G  PD  ++N M+EGL    K  DA  LFE  + KG + +
Sbjct: 554 LAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIH 613

Query: 418 VRSYTIMIWKF----CKQNAAV 435
            ++  +++       C + AA+
Sbjct: 614 TKTCVVLLDALHKAECLEQAAI 635


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 22/351 (6%)

Query: 260 QFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + +  + +  EM + + L S+  F   ++A A  K+    +++ E M   +    + + N
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 319 CLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+    R S+LP    +L   +K  + P++ T + LL G+C  K + +A  + ++M++ 
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G+KPD V  N ++ GL    K S+A+ L + M  +G  P++ +Y  ++   CK+      
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         +  +Y  +I G    + +D  + L  +ME +G  PD  TYN+LI  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       +A R+   M+     P + T++ ++ ++ + G      K++DEMI+R   PD
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y+ LI G    DR  EA    E M+ K     V+ YN       +A R
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 177/351 (50%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  ++ T+N+++  L    +    V+++++M ++G    + T+   +N      +   A
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +++ + M K K +A V   N +++ L + K   +A  LF+K++ +   P++ TY  L+  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ + MI++   P+VV  + +++  +K GK  +A KL++ M  +   P+
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+ +I  FC  +               R+D    + + M  + C P+ +TYN LIK 
Sbjct: 360 IFTYSSLINGFCMHD---------------RLDEAKHMFELMISKDCFPNVVTYNTLIKG 404

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               K  +E + +++EM + G      TYN +++  FQ G+ +M +K++ +M+  G  PD
Sbjct: 405 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y++L+ GL    +  +A    E + +  M+  +  YN     + +AG+
Sbjct: 465 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 177/383 (46%), Gaps = 30/383 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFEL 304
           TY ++++ L +    +  +S+L++M EKG +  +   +   ++     K    A A+F  
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNK 280

Query: 305 MNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           M     +  V T N L+    N GR      ++LL + ++ +  PN+ T++ L+  + + 
Sbjct: 281 METKGIRPDVFTYNSLISCLCNYGR--WSDASRLLSNMIERKINPNVVTFSALIDAFVKE 338

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA ++++EMI +   PD+  ++ ++ G     +  +A  +FE+M +K   PNV +Y
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  FCK                     N   Y  LI G       D+   + K+M  
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458

Query: 462 RGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            G PPD +TY+ L+  L K  K+ ++A+ +++ + +S  +P I+TYN++++   + G  E
Sbjct: 459 DGVPPDIITYSILLDGLCKYGKL-EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVE 517

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
            G  ++  +  +G  P+   YT +I G   +    EA     EM E G       YN   
Sbjct: 518 DGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLI 577

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               R G      EL ++MR  G
Sbjct: 578 RARLRDGDKAASAELIKEMRSCG 600



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 177/383 (46%), Gaps = 25/383 (6%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID   SL + ME    E  + + +N ++D L +++H    AF  F     K G   +  T
Sbjct: 236 IDLALSLLKKMEKGKIEADVVI-YNTIIDGLCKYKHID-DAFALFNKMETK-GIRPDVFT 292

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YNS++S L    ++     +L  M E+ +  ++ TF   ++AF    +  +A  +++ M 
Sbjct: 293 YNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K      + T + L+          EA+ +F+ +  +   PN+ TY  L+ G+C+ K + 
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   ++ EM  +G   + V +N +++GL + G    A K+F+ M + G  P++ +Y+I++
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ + Y  +I     + + +EA  +++EM   G  P    YN ++++  + G+     ++
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAEL 592

Query: 526 WDEMIRRGCCPDDNSYTVLIGGL 548
             EM   G   D ++ +++I  L
Sbjct: 593 IKEMRSCGFVGDASTISMVINML 615


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 175/364 (48%), Gaps = 23/364 (6%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
           F  + +  N ++ IL         + +   MGE G+  ++ T+   +++F    E ++A+
Sbjct: 198 FLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRAL 257

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLTTYTVLLG 356
            +   M +        T N L+  L +    ++A+ L  ++     R +P   TY  L+ 
Sbjct: 258 DLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSP--YTYNPLIC 315

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+   L+EA  +W EM+ +G  P V +HN ++ G  K GK SDA +    M  K   P
Sbjct: 316 GYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMP 375

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ SY  +I+ FC+             GN   +   + LL E+  R    + +TYN LI 
Sbjct: 376 DIISYNTLIYGFCR------------LGN---IGEAFILLDELRFRNLSFNIVTYNTLID 420

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L ++  + + A+++ ++M+  G  P + TY +++    + GN  M ++ +DEM+  G  
Sbjct: 421 GLCRLGDL-ETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLA 479

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PD  +YT  I G +    + +A+K  EEML KG    V+ YN F   L + G      EL
Sbjct: 480 PDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGEL 539

Query: 596 AQKM 599
            QKM
Sbjct: 540 LQKM 543



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 189/412 (45%), Gaps = 47/412 (11%)

Query: 212 NLVVDVLERFR----HARRPA-------FRFFCWAGD------------KPGFAHNSRTY 248
           NL+V  LE +R    +  RP           FC  G+            + G   +  T+
Sbjct: 216 NLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTF 275

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N +++ L +  + +    +++EM + GL +S  T+   +  +       +A+A++E M  
Sbjct: 276 NVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVT 335

Query: 308 YKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
                 V + N ++    +  K+    Q L D LK    P++ +Y  L+ G+CR+ N+ E
Sbjct: 336 RGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGE 395

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  + +E+  +    ++V +N +++GL ++G    A+KL E M  +G  P+V +YT+++ 
Sbjct: 396 AFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVN 455

Query: 427 KFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK                     +   YT  I G          + L +EM  +G PP
Sbjct: 456 GACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPP 515

Query: 467 DGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           D +TYN  +  L K+  + +EA  + ++M+R G  P   TY   M ++ + G+   GR++
Sbjct: 516 DVITYNVFVNGLCKLGNL-EEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREI 574

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           + +M+ RG  P   +YTVLI       R   A  Y  EM EKG+   V+ YN
Sbjct: 575 FYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYN 626



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 157/340 (46%), Gaps = 38/340 (11%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            + N  TYN+++  L R    ET + + E+M  +G+   + T+ + +N          A 
Sbjct: 408 LSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAK 467

Query: 300 AIFELM-------NKYKFKAGVDTINCLLENLGRSKL---PKEAQLLFDKLKHRFTPNLT 349
             F+ M       +++ + A +         +G  KL    K  +L  + L   F P++ 
Sbjct: 468 EFFDEMLHVGLAPDQFAYTARI---------VGELKLGDTAKAFKLQEEMLTKGFPPDVI 518

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY V + G C++ NL EAG +  +MI  G  PD V +   +   ++ G   +  ++F  M
Sbjct: 519 TYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDM 578

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
            ++G +P V +YT+               LI       R+D       EM+E+G  P+ +
Sbjct: 579 LSRGQTPTVVTYTV---------------LIHAHALNGRLDWAMAYFLEMQEKGVVPNVI 623

Query: 470 TYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           TYN LI    K++KM D+A + + EM   G  P  +TY +++      G ++   +++ +
Sbjct: 624 TYNVLINGFCKVRKM-DQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQ 682

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           M+ +   PD  ++  L+  L  +D   +A +++E ++  G
Sbjct: 683 MLGKRIRPDSCTHGALLKKL-DKDYKVQAVQFIESLILDG 721



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 134/297 (45%), Gaps = 32/297 (10%)

Query: 302 FELMNKYKFK---AGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           F L+++ +F+     + T N L++ L R   L    +L  D +     P++ TYTVL+ G
Sbjct: 397 FILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG 456

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++ N++ A   ++EM+  G  PD  A+   + G LK+G  + A KL E M  KG  P+
Sbjct: 457 ACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPD 516

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGN----RRRMDIVY 453
           V +Y + +   CK                     +   YT  +         R   +I Y
Sbjct: 517 VITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFY 576

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           D+L     RG  P  +TY  LI    +    D A+  + EM   G  P + TYN+++  +
Sbjct: 577 DML----SRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGF 632

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            +    +   K + EM  +G  P+  +YT+LI    +  +  EA +   +ML K ++
Sbjct: 633 CKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIR 689



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 23/247 (9%)

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           VL+GG+   + L+    V+ +M+   F PDV   N +L+ L        A++++ +M   
Sbjct: 176 VLIGGYLNYQCLL----VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEY 231

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P V +Y  M+  FCK             G  +R     DL+ +M+ERGC P  +T+N
Sbjct: 232 GIRPTVTTYNTMLHSFCKG------------GEVQR---ALDLVPKMQERGCYPSEVTFN 276

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +  +    +A  + +EM ++G + + +TYN ++  Y + G       +W+EM+ R
Sbjct: 277 VLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTR 336

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS--- 589
           G  P   S+  ++ G   + +  +A + L +ML+K +   ++ YN       R G     
Sbjct: 337 GVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEA 396

Query: 590 -YVLDEL 595
             +LDEL
Sbjct: 397 FILLDEL 403



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 165/393 (41%), Gaps = 24/393 (6%)

Query: 213 LVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           L++ VL   R     A RFF     +PGF  +   + +++ IL      ++   ++E   
Sbjct: 107 LLIRVLYSIREKPTIALRFFKCVLTQPGFKTSEYAFCAILQILVDNCLMKSAYWVMER-- 164

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
              ++S E + I ++         + + +FE M + +F   V   N +L+ L    L  +
Sbjct: 165 ---IISFEMYGI-VDVLIGGYLNYQCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVK 220

Query: 333 AQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A  ++  + ++   P +TTY  +L  +C+   +  A  +  +M ++G  P  V  N+++ 
Sbjct: 221 ALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLIN 280

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           GL K G+   A  L + M   G   +  +Y  +I  +CK+   V                
Sbjct: 281 GLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEA-------------- 326

Query: 452 VYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              L +EM  RG  P   ++N ++    K  KM D A +   +M++    P I +YN ++
Sbjct: 327 -LALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSD-ARQQLSDMLKKNLMPDIISYNTLI 384

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             + + GN      + DE+  R    +  +Y  LI GL        A K  E+M+ +G+ 
Sbjct: 385 YGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIH 444

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             V+ Y        + G   +  E   +M   G
Sbjct: 445 PDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVG 477


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 218/522 (41%), Gaps = 99/522 (18%)

Query: 165 SEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDE-CG---INLSHNLVVDVLER 220
           ++++ ++ K   D +    V +++  L     +ME+ LD  C    I LS N V  VL+ 
Sbjct: 11  NDLSDIASKPPQDLKPSPWVHQIMSLLLDGPVDMESRLDLFCNKFLIKLSPNFVSFVLKS 70

Query: 221 FRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILG---------------RARQFET 263
               +RP  A +FF WAG +  + HN + Y S + +L                R   F  
Sbjct: 71  MELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLM 130

Query: 264 MVS-------------MLEE-------MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
            VS             M+EE       M E G+  S+ T+   +N    +   + A  + 
Sbjct: 131 NVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVL 190

Query: 303 ELMNKYKFKAGVDTINCLLE---NLGRSKLPKE-------------------------AQ 334
           E+M   K    V T N +++    +G+++   E                         A+
Sbjct: 191 EVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAE 250

Query: 335 LLFD---KLKHRFTPN-----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
             FD    L H    N        Y++++GG C+    +E   V+ +MI KG K +V  +
Sbjct: 251 GDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIY 310

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
             +++   K G   +A+ LFE MK +G  P+V +Y +++   CK                
Sbjct: 311 TALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRV 370

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                NA +Y+ LI G G   R+     L +EM ++GCPPD   YNALI  +      DE
Sbjct: 371 NGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDE 430

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+  +K M   G   T++TY +++   F+    E   K+WD MI +G  P   ++  L  
Sbjct: 431 ALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSI 490

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           GL    +   A K L+E+   G+  P   +      L +AGR
Sbjct: 491 GLCLSGKVARACKLLDELAPMGV-IPETAFEDMLNVLCKAGR 531



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 18/258 (6%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           F  N++    L+  +  +  + E   VW  M + G +P +  +N +L GL+       A 
Sbjct: 128 FLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAE 187

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++ EVM+     P+V +Y  MI  +C+             G  ++    ++  ++ME R 
Sbjct: 188 RVLEVMENGKIGPDVVTYNTMIKGYCQ------------VGKTQK---AFEKFRDMELRN 232

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +TY  LI+    +   D  + +Y EM  +G +   H Y++++    + G    G 
Sbjct: 233 VAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGY 292

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            V+++MI++GC  +   YT LI         GEA    E M ++G++  V+ Y      +
Sbjct: 293 AVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCM 352

Query: 584 SRAGRSYVLDELAQKMRF 601
            ++GR   LDE  + + F
Sbjct: 353 CKSGR---LDEAMEYLEF 367


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 202/446 (45%), Gaps = 25/446 (5%)

Query: 162 NSESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLER 220
            SE  I ++  +     R + ER  +++ ++F    + E  L+   + + H LV +V+ +
Sbjct: 41  QSEEAIATIVPRYAHSVRVLDERFIRIL-KIFKWGPDAEKALEVLMLRVDHWLVREVM-K 98

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
                    +FF WA  +  + H++ TY +++  L    Q+  M  M++EM    +  + 
Sbjct: 99  TDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVT 158

Query: 281 TFKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
             +++  +     AK   KA+AIF  +   K +      N ++  L       +   L++
Sbjct: 159 PTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYN 218

Query: 339 KLK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           ++    H F P+  TY+ L+  +C++     A ++ NEM + G +P    + +++    K
Sbjct: 219 EMSTEGHCF-PDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFK 277

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           +     A+ LFE M+                ++C+ +   YT LI G G   R+D  Y  
Sbjct: 278 LDDVHGALSLFEEMRH---------------QYCRPDVFTYTELIRGLGKAGRIDEAYHF 322

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM+  GC PD +  N +I  +      D+A+++++EM      P++ TYN I+K+ F+
Sbjct: 323 FYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFE 382

Query: 516 TGNYEMGRKVWDE-MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + +       W E M   G  P   +Y++LI G    +R  +A   LEEM EKG      
Sbjct: 383 SKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPA 442

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMR 600
            Y      L +A R  +  EL Q+++
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELK 468



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 170/415 (40%), Gaps = 62/415 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAI 301
            ++ YNSM+ +L    Q+  +  +  EM  +G       T+   ++AF     R  A  +
Sbjct: 193 TAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQL 252

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
              M +   +        L+    +      A  LF++++H++  P++ TYT L+ G  +
Sbjct: 253 LNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 312

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-------------- 406
              + EA   + EM  +G +PD V  N M+  L K G+  DA+KLF              
Sbjct: 313 AGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVT 372

Query: 407 ----------------------EVMKAKGPSPNVRSYTIMIWKFCKQN------------ 432
                                 E MK  G SP+  +Y+I+I  FCK N            
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 432

Query: 433 --------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                    A Y  LI   G  +R D+  +L +E++E         Y  +IK +      
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+A+ ++ EM + G  P ++ YN +M    +TG  +        M   GC PD NSY ++
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 552

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           + GL        A + L  M +  ++  V+ YN     LS AG   + +E A+ M
Sbjct: 553 LNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAG---MFEEAAKLM 604



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 152/347 (43%), Gaps = 18/347 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
           TY  ++  LG+A + +       EM  +G          M N    A     A+ +F+ M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEM 361

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
              +    V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+   
Sbjct: 362 GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 421

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y +
Sbjct: 422 MEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 481

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI                  G   R+D   ++  EM + GC PD   YNAL+  +    M
Sbjct: 482 MI---------------KHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 526

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+   + M   G  P I++YN+I+    +TG      ++   M +    PD  SY  
Sbjct: 527 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 586

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           ++G L       EA K +EEM   G +  ++ Y+     + +    Y
Sbjct: 587 VLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKVDHEY 633



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             A+ +F+ MNK      V   N L+  L R+ +  EA     +++ H   P++ +Y ++
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 552

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G  +      A  + + M     +PDVV++N +L  L   G   +A KL E M   G 
Sbjct: 553 LNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGF 612

Query: 415 SPNVRSYT 422
             ++ +Y+
Sbjct: 613 EYDLITYS 620


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 172/364 (47%), Gaps = 20/364 (5%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  +Y SM+ +L   GR  + E +   +E   E+ +     +   +  + +A+   
Sbjct: 276 GLRPDDVSYTSMVWVLCKAGRLGEAEELFGQME--AERDVPCAYAYNTMIMGYGSAERFD 333

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A  + E + +      V + N +L  LG+ +   EA  LFD +K    PN++TY +++ 
Sbjct: 334 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIID 393

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C    + EA ++ +EM   G  P++++ NIM++ L K  +  +A ++FE    +G   
Sbjct: 394 MLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERG--- 450

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  N+  Y  LI G G + ++D  Y L ++M + G   + + Y +LI+
Sbjct: 451 ------------CNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIR 498

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
              +    ++  +IYKEM+R G +P +   N  M   F+ G  E GR ++++M   G  P
Sbjct: 499 NFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLP 558

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY++LI GL    ++ E     + M ++G       YN     L ++G+     E+ 
Sbjct: 559 DVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVL 618

Query: 597 QKMR 600
           ++M+
Sbjct: 619 EEMK 622



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 176/436 (40%), Gaps = 61/436 (13%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           +H++VV VL   ++    A  FF  A            YN+++  L  +     +  +LE
Sbjct: 74  AHDVVVYVLRSLKNPSLAA-PFFLLASASSSQPLPPDAYNAVLPFL--SHDLAALEKVLE 130

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EM   G  L        +     ++  + A  +   M   KF+        L+  L  ++
Sbjct: 131 EMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEAR 190

Query: 329 LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            P+ A  L  +++   +  ++  +T L+    R   +  A  + +E+     +PD+V +N
Sbjct: 191 QPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYN 250

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------- 432
           + ++   K G    A K F  +KA G  P+  SYT M+W  CK                 
Sbjct: 251 VCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAE 310

Query: 433 -----AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
                A  Y  +I G+G+  R D  Y LL+ + ERGC P  +++N+++  +  ++  DEA
Sbjct: 311 RDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEA 370

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM------------------ 529
           + ++  M +   KP I TYN+I+      G      K+ DEM                  
Sbjct: 371 LTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDR 429

Query: 530 -----------------IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
                              RGC P+  +Y  LI GL  + +  +AY+  E+ML+ G  A 
Sbjct: 430 LCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDAN 489

Query: 573 VLDYNKFAADLSRAGR 588
            + Y     +    GR
Sbjct: 490 PIIYTSLIRNFFMHGR 505



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 191/418 (45%), Gaps = 26/418 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           LS N++VD L +       A R F  A ++ G   NS TY S++  LG+  + +    + 
Sbjct: 421 LSVNIMVDRLCKANQLEE-AHRIFESASER-GCNPNSVTYCSLIDGLGKKGKIDDAYRLF 478

Query: 269 EEMGEKGLLSMETFKIAM--NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           E+M + G  +      ++  N F   + ++    I++ M +   +  +  +N  ++ + +
Sbjct: 479 EKMLDAGHDANPIIYTSLIRNFFMHGR-KEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFK 537

Query: 327 SKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +   ++ + +F+ +K   F P++ +Y++L+ G  +     E   ++  M  +GF  D  A
Sbjct: 538 AGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARA 597

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY---------------TIMIWKFCK 430
           +N +++GL K GK   A ++ E MK K   P V +Y                 M+++  K
Sbjct: 598 YNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAK 657

Query: 431 Q-----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                 N  +Y+ LI GFG   R+D  Y +L+EM ++G  P+  T+N+L+  +   +  D
Sbjct: 658 SKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEID 717

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+  ++ M      P  +TY++++    +   Y      W EM ++G  P+  +YT +I
Sbjct: 718 EALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMI 777

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL       +AY   E     G       +N     +S A R     ++ ++ R  G
Sbjct: 778 SGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRG 835



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  + R+Y+ ++  L +A Q     ++ + M ++G  L    +   ++    + +  KA
Sbjct: 555 GFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKA 614

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + E M        V T   +++ L +     EA +LF++ K +    N+  Y+ L+ G
Sbjct: 615 YEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDG 674

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +V  + EA  +  EM+ KG  P+V   N +++ L+K  +  +A+  F+ MK    SPN
Sbjct: 675 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPN 734

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y+I+I   C+                     N   YT +I+G      +   Y L +
Sbjct: 735 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFE 794

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             +  G  PD  ++NALI+ M     P EA ++++E    G +  + T
Sbjct: 795 RFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKT 842



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 124/287 (43%), Gaps = 17/287 (5%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           L+  L RS+  ++A  +   ++H +F P  + YTVL+G     +    A  +  +M D G
Sbjct: 147 LVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVG 206

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
           ++  V     ++  L + G+   A+ L + +K     P++                +Y  
Sbjct: 207 YEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDI---------------VLYNV 251

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
            I  FG    +D+ +    E++  G  PD ++Y +++ ++       EA  ++ +M    
Sbjct: 252 CIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAER 311

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P  + YN ++  Y     ++   K+ + +  RGC P   S+  ++  L  + +  EA 
Sbjct: 312 DVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 371

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
             L ++++K  K  +  YN     L  AGR     ++  +M  +G F
Sbjct: 372 T-LFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLF 417


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 177/384 (46%), Gaps = 30/384 (7%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           + H +RT+ ++   L     F  MV+         L S+  F    +A    K  K  V+
Sbjct: 62  YRHKNRTFRNINDALS---AFNHMVN------TNPLPSIVKFGELFSALVRMKHYKTVVS 112

Query: 301 IFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           + + M        V ++  L+    R   +     +L   +K    PN+ T++ L+ G+C
Sbjct: 113 LSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFC 172

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
               +  A  +++ M+ +G+KP+V +++I+++GL ++GK ++ IKL E MK  G  P+V 
Sbjct: 173 IEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVV 232

Query: 420 SYTIMIWKFCKQ---NAAV-----------------YTCLITGFGNRRRMDIVYDLLKEM 459
            Y  ++ + CK    N AV                 YT LI G  N  R    + LL EM
Sbjct: 233 IYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEM 292

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +     PD + ++ LI +M  +    EA  I K M   G +P + TYN +M  Y      
Sbjct: 293 KGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEV 352

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
              RKV++ MI +G  PD  S+++L+ G     R  EA +  +EM  +G+    + YN  
Sbjct: 353 VEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTL 412

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
            + L +A R    +EL + M  +G
Sbjct: 413 ISGLCQARRPLEAEELFKDMHSNG 436



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  N  +Y+ ++  L R  +   ++ +LE M   G    +  +   ++     +   +A
Sbjct: 191 GYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEA 250

Query: 299 VAIFELMNKYKFKAGVDTINCL---LENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVL 354
           V IF  M        V T   L   L NLGR K   EA  L +++K     P+L  ++VL
Sbjct: 251 VHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWK---EAFGLLNEMKGGNIMPDLVAFSVL 307

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+   + EA  +   M + G +PDV  +N ++ G     +  +A K+FEVM +KG 
Sbjct: 308 IDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR 367

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+V S++I++  +CK                     +   Y  LI+G    RR     +
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L K+M   G PP+ +TY+ L+  +  Q   D+A+ +++ M  SG KP + TYN+++    
Sbjct: 428 LFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMC 487

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           + G ++  R+++ E+  +G  P++   T  I G+       EA+K   +M
Sbjct: 488 KYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQM 537



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 167/386 (43%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G +H+  +   +++   R    +   S+L ++ + GL  ++ TF   +N F    +  +A
Sbjct: 121 GISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRA 180

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F++M    +K  V + + +++ L R     E   L + +K     P++  Y  ++  
Sbjct: 181 IELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDR 240

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ + + EA  ++ +M   G  P VV +  ++ GL  +G+  +A  L   MK     P+
Sbjct: 241 LCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPD 300

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +++++I   CK+                    + A Y  L+ G+  R  +     + +
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M  +G  PD  +++ L+      K  DEA +++ EM   G  P   +YN ++    Q  
Sbjct: 361 VMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQAR 420

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                 +++ +M   G  P+  +Y++L+  L  Q    +A      M   G+K  ++ YN
Sbjct: 421 RPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYN 480

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                + + G+     EL  ++   G
Sbjct: 481 IMIDGMCKYGKFKDARELFAELSVKG 506



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 165/362 (45%), Gaps = 26/362 (7%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           I+ +C+V    E+  L  +M+ V  E  + + +N +VD L + R     A   FC     
Sbjct: 203 IKGLCRVGKTTEVIKLLEHMKVVGCEPDVVI-YNTIVDRLCKDRLVNE-AVHIFCKM-KG 259

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKK 297
            G      TY S++  L    +++    +L EM G   +  +  F + ++      E  +
Sbjct: 260 TGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSE 319

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLL 355
           A  I + M +   +  V T N L+          EA+ +F+ +  K R  P++ ++++L+
Sbjct: 320 ARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRM-PDVFSFSILV 378

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+ K + EA ++++EM  +G  PD V++N ++ GL +  +  +A +LF+ M + G  
Sbjct: 379 NGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYP 438

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN+ +Y+I++    KQ                 +D    L + ME  G  PD +TYN +I
Sbjct: 439 PNLVTYSILLDCLSKQG---------------YLDQAMGLFRAMENSGLKPDLVTYNIMI 483

Query: 476 KLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             M K  K  D A  ++ E+   G +P        +    + G  +   K + +M +  C
Sbjct: 484 DGMCKYGKFKD-ARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDC 542

Query: 535 CP 536
            P
Sbjct: 543 SP 544


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 167/352 (47%), Gaps = 30/352 (8%)

Query: 232 FCWAGDKPGFAH-------------NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL- 277
           FC AG+    +H             +  TY +++  L + ++ E  V+++E++   G   
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTP 300

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ T+   +N        ++A+ +   +        V T   L++ LG+ K   EA  LF
Sbjct: 301 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 360

Query: 338 DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            ++  R    +   YT L+    +   + +A  V+  M   G  PDVV  + M++GL K 
Sbjct: 361 KEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 420

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G+   A+++F+ M+A+G +PN                 VY+ LI G    R+MD   ++L
Sbjct: 421 GRIGAAVRIFKSMEARGLAPN---------------EVVYSALIHGLCKARKMDCALEML 465

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +M++  C PD +TYN LI  +      + A   + EM+ +G KP ++TYN+++  + + 
Sbjct: 466 AQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKA 525

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           GN +    V+D+M    C  +  +Y  LI GL  + +  +A  Y + M E+G
Sbjct: 526 GNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 163/351 (46%), Gaps = 16/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TY S++  LG+ ++      + +EM  +GL L    +   +       +  +A
Sbjct: 51  GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA 110

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            ++++ M  +     V T++ +++ L ++     A  +F  ++ R   PN   Y+ L+ G
Sbjct: 111 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 170

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ + +  A  +  +M      PD + +N++++GL K G    A   F+ M   G  P+
Sbjct: 171 LCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPD 230

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y I+I  FCK             GN       + L +E    GC  D  TY A++  
Sbjct: 231 VYTYNILISGFCKA------------GNTDAAS--HSLAQETTINGCTIDIHTYTAIVDW 276

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   K  +EAV + +++  +G  PTI TYN ++    + G  E    +  +++  GC PD
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 336

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +YT LI GL  + RS EAYK  +EM  +G+    + Y     +L + G+
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGK 387



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 192/444 (43%), Gaps = 71/444 (15%)

Query: 210 SHNLVVDV------LERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           SH  V DV      ++    A R   A R F  + +  G A N   Y++++  L +AR+ 
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF-KSMEARGLAPNEVVYSALIHGLCKARKM 177

Query: 262 ETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
           +  + ML +M +K   + +T  + + ++    + + + A A F+ M +   K  V T N 
Sbjct: 178 DCALEMLAQM-KKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNI 236

Query: 320 LLEN------------------------------------LGRSKLPKEAQLLFDKL-KH 342
           L+                                      L ++K  +EA  L +K+  +
Sbjct: 237 LISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITAN 296

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
             TP + TY  LL G C++  L EA  +  +++D G  PDVV +  +++GL K  +  +A
Sbjct: 297 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 356

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITG 442
            KLF+ M  +G + +   YT +I +                     C  +    + +I G
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKP 501
                R+     + K ME RG  P+ + Y+ALI  L K +KM D A+ +  +M ++   P
Sbjct: 417 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM-DCALEMLAQMKKAFCTP 475

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              TYN+++    ++G+ E  R  +DEM+  GC PD  +Y +LI G      +  A    
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 535

Query: 562 EEMLEKGMKAPVLDYNKFAADLSR 585
           ++M      A V+ Y    + L +
Sbjct: 536 DDMSSSRCSANVVTYGALISGLCK 559



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 146/315 (46%), Gaps = 22/315 (6%)

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           ++AVA+ E +        + T N LL  L +  +L +   LL   + +  TP++ TYT L
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G  + K   EA +++ EM  +G   D V +  ++  LL+ GK   A  +++ M + G 
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 122

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+V + + MI    K                     N  VY+ LI G    R+MD   +
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 182

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L +M++  C PD +TYN LI  +      + A   + EM+ +G KP ++TYN+++  + 
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 242

Query: 515 QTGNYEMG-RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
           + GN +     +  E    GC  D ++YT ++  L    +  EA   +E++   G    +
Sbjct: 243 KAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTI 302

Query: 574 LDYNKFAADLSRAGR 588
             YN     L + GR
Sbjct: 303 ATYNALLNGLCKMGR 317



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 167/382 (43%), Gaps = 24/382 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A ++  Y +++  L +  +     S+ + M   G +  + T    ++  + A     A
Sbjct: 86  GLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAA 145

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           V IF+ M            + L+  L +++    A  +  ++K  F TP+  TY VL+ G
Sbjct: 146 VRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDG 205

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPSP 416
            C+  ++  A   ++EM++ G KPDV  +NI++ G  K G    A   L +     G + 
Sbjct: 206 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTI 265

Query: 417 NVRSYTIMI-W-------------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           ++ +YT ++ W                     C    A Y  L+ G     R++   DLL
Sbjct: 266 DIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +++ + GC PD +TY +LI  +  +K   EA +++KEM   G       Y  +++   QT
Sbjct: 326 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G       V+  M   GC PD  + + +I GL    R G A +  + M  +G+    + Y
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445

Query: 577 NKFAADLSRAGR-SYVLDELAQ 597
           +     L +A +    L+ LAQ
Sbjct: 446 SALIHGLCKARKMDCALEMLAQ 467



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 159/382 (41%), Gaps = 53/382 (13%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + E  V+++E++   G   ++ T+   +N        ++A+ +   +        V T  
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L++ LG+ K   EA  LF ++  R    +   YT L+    +   + +A  V+  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G  PDVV  + M++GL K G+   A+++F+ M+A+G +PN                 VY+
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN---------------EVVYS 165

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI G    R+MD   ++L +M++  C PD +TYN LI  +      + A   + EM+ +
Sbjct: 166 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEA 225

Query: 498 GFKPT------------------------------------IHTYNMIMKSYFQTGNYEM 521
           G KP                                     IHTY  I+    +    E 
Sbjct: 226 GCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEE 285

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              + +++   GC P   +Y  L+ GL    R  EA   L ++++ G    V+ Y     
Sbjct: 286 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 345

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
            L +  RS+   +L ++M   G
Sbjct: 346 GLGKEKRSFEAYKLFKEMALRG 367


>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 178/374 (47%), Gaps = 23/374 (6%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKE 294
           D   F +   +Y+ +++ LGR+R F  M  +L ++  +   S +   F   ++ +  A+ 
Sbjct: 35  DPKPFRYTHLSYDLIITKLGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARL 94

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             +A+  FE + +++ +  V ++N LL  L + K  ++   +   +    TP++ TY VL
Sbjct: 95  PDRAIQTFESIPEFRCQRTVKSLNSLLNALLKCKEFEKFDGILSGIDKFATPDVCTYNVL 154

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKG 413
           +   C   +L +A  V++EM+ K   P+VV    ++ GL    +  +A +L E M K   
Sbjct: 155 INACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFN 214

Query: 414 PSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVY 453
             PN   Y  ++   C+ N                    + +Y+ LI       R D V+
Sbjct: 215 VKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVF 274

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            +L+EM E GC PD +TYNA+I     +K  + A  + +EMV  G KP + +YN+I+   
Sbjct: 275 VVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGL 334

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G +     ++++M RRGC PD  SY +L  GL    +  EA   L+EM+ KG     
Sbjct: 335 CKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKS 394

Query: 574 LDYNKFAADLSRAG 587
               KF   L + G
Sbjct: 395 ASKTKFVEALCQEG 408



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 162/367 (44%), Gaps = 30/367 (8%)

Query: 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
           + ++FE    +L  + +     + T+ + +NA  ++     A  +F+ M +      V T
Sbjct: 126 KCKEFEKFDGILSGIDKFATPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVT 185

Query: 317 INCLLENL-GRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
              L+  L G S+L +  +L  D +K     PN   Y  L+ G CRV  L  A  +  EM
Sbjct: 186 FGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEM 245

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           +    + D   ++ ++  L K+G++ +   + E M+  G               CK +  
Sbjct: 246 VANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENG---------------CKPDTV 290

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  +I+GF N +  +  Y +L+EM  +GC PD ++YN +I  +  +    EA  ++++M
Sbjct: 291 TYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDM 350

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            R G  P + +Y ++     +   +     + DEM+ +G  P   S T  +  L  +   
Sbjct: 351 PRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKTKFVEALCQEGN- 409

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
               + L ++L   +K  V+D + ++  +S+         + +K + S   E+ ++  + 
Sbjct: 410 ---LELLCKVLNSLVKGNVIDGDAWSLAVSK---------VCKKEKLSNGSELVDIFLKD 457

Query: 615 AETTKNR 621
            ET   R
Sbjct: 458 TETVPIR 464


>gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1029

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 232/529 (43%), Gaps = 36/529 (6%)

Query: 112 LLNKSTNVVASSLTNHN----LATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESE- 166
           L N+ T+++ S +   +    L  ++    C N   VS      +++     G N E++ 
Sbjct: 54  LFNEITDILGSDVVQTDETTRLRAHVSAPVCDNGALVSCTQGVRENAAMGFSGENEEAQK 113

Query: 167 --ITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHA 224
             +  V +       +I  V +  DE+ S++  +E +           +V +VL+R    
Sbjct: 114 GLLEKVDFSPVV--HQITSVVRADDEIVSMEDRLEIL----SFRFEPEIVENVLKRCFKV 167

Query: 225 RRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFK 283
              A RFF W   K GF+H    YN+M+SI G AR  + +  +++EM +      + T+ 
Sbjct: 168 PHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAGEARNLDMVDELVKEMEKHACDKDIRTWT 227

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL---GRSKLPKEAQLLFDKL 340
           I ++ +  AK+  K + +FE M K  F+      N ++ +L   GR  L  E     + +
Sbjct: 228 ILISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYNIMIRSLCIAGRGDLALE--FYKEMM 285

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           +   T  L TY +LL    + + +     + ++M+      +  A   +L+     GK  
Sbjct: 286 EKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIK 345

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +A++L   +K K    + + + I++   C+ N  V    I     RR++D          
Sbjct: 346 EALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLD---------- 395

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
                 D   Y  +I     Q    +A+  ++ + +SG  P + TY  IM+  F+   +E
Sbjct: 396 ------DSNVYGIIISGYLRQNDVSKALEQFEIIKKSGRPPRVSTYTEIMQQLFKLKQFE 449

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
            G  ++ EMI  G  PD  + T ++ G + Q+R  EA+K    M EKG+K     Y+ F 
Sbjct: 450 KGCNLFSEMIESGIEPDSVAITAVVAGHLGQNRVAEAWKVFGSMEEKGIKPTWKSYSIFM 509

Query: 581 ADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRIE 629
            +L R+ R   +  L  +M  S K  + + +  W  ++  +   K++I+
Sbjct: 510 KELCRSSRYDEIITLFNQMHAS-KIAIRDDIFSWVISSMEKNGEKEKID 557



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 181/419 (43%), Gaps = 21/419 (5%)

Query: 174  STADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFC 233
            S  D  +++ +C V+      +R  EA L++  +  +  LVV+VL   +       RFF 
Sbjct: 606  SAVDKMDVQEICHVLSSSRDWERTQEA-LEKLTVQFTPELVVEVLRNAKIQGNAVLRFFS 664

Query: 234  WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAA 292
            W G + G+ HNS  YN  + + G  + F+ M S+  EM  +G L++ +T+ I +  +   
Sbjct: 665  WVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRT 724

Query: 293  KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK---LPKEAQLLFDKLKHRFTPNLT 349
                 A+  F+ M          T  CL+  L   K   + +  +   + ++  F P+  
Sbjct: 725  GLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATKTFREMIRSGFVPDRE 784

Query: 350  TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
                 LG  C V N  +A    + +   GF P  VA++I +  L +IGK  +A  L E+ 
Sbjct: 785  LVQDYLGCLCEVGNTKDAKSCLDSLGKIGF-PVPVAYSIYIRALSRIGKLEEA--LSELA 841

Query: 410  KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              +G    +  YT             Y  ++ G   R  +    D +  M+E G  P   
Sbjct: 842  SFEGDRSLLDQYT-------------YGSIVHGLLQRGDLHKALDKVNSMKEIGIKPGVH 888

Query: 470  TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
             Y +LI     +K  ++ +    +M     +P++ TY  ++  Y   G  E   K +  +
Sbjct: 889  VYTSLIVHFFKEKQFEKVLETCHKMKEESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNI 948

Query: 530  IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              +G  PD  +Y+  I  L    +S +A K L EML+KG+    +++      L+R G+
Sbjct: 949  EEKGTSPDFKTYSKFINCLCQAGKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGK 1007


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 173/376 (46%), Gaps = 22/376 (5%)

Query: 217 VLERFRHARRPAFRFFCWAG-DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG 275
           +++ F H +R    F  ++   K G   ++ T+N++++ L +  +F   V   ++    G
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 276 LL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
              ++ T+   +N      E   A  +F+ M +   +  V T N L+++L + KL  EA 
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 335 LLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            +F  +K  R +P++ TY  L+ G C  +   EA  + NEM      P++   N++++ +
Sbjct: 256 DIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
            K GK S+A  +F+ M   G  P+V +Y+ +++                 G   RM+IV 
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMY-----------------GYSLRMEIVE 358

Query: 454 --DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              L   M  +GC PD  +YN LIK     K  DEA +++ EM+  G  P    YN ++ 
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIH 418

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              Q G     + ++  M   G  PD  +Y++L+ G   +   G+A++    M    +K 
Sbjct: 419 GLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKP 478

Query: 572 PVLDYNKFAADLSRAG 587
            +  YN     + + G
Sbjct: 479 DIAMYNILIDAMCKFG 494



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 17/353 (4%)

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           +I+   + +  ++S+ ++M   GL   + T  I ++ F+  +    A ++F  M K   +
Sbjct: 103 AIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQ 162

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               T N L+  L +     +A   FD  +     P + TYT ++ G C++     A  +
Sbjct: 163 PDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGL 222

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           + +M + G +P+VV +NI+++ L K    ++A+ +F  MKAK  SP++ +Y  +I   C 
Sbjct: 223 FKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLC- 281

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                         N RR      LL EM      P+  T+N L+  +  +    EA  +
Sbjct: 282 --------------NFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGV 327

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           +K M   G +P + TY+ +M  Y         RK++D MI +GC PD  SY +LI G   
Sbjct: 328 FKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCK 387

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             R  EA +   EM+ +G+    ++YN     L + GR     +L + M  +G
Sbjct: 388 AKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNG 440



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 16/220 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           ++ I +  +  AK   +A  +F  M            N L+  L +    +EAQ LF  +
Sbjct: 377 SYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436

Query: 341 KHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 P+L TY++LL G+C+   L +A R++  M     KPD+  +NI+++ + K G  
Sbjct: 437 HSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNL 496

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            DA KLF  +  +G  PNV+ YT +I   CK+                 +D   +  + M
Sbjct: 497 KDARKLFSELFVQGLLPNVQIYTTIINNLCKEGL---------------LDEALEAFRNM 541

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           E  GCPPD  +YN +I+     K    A ++  EM   GF
Sbjct: 542 EGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGF 581


>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
          Length = 655

 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 32/381 (8%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           +  H+ V   L  + +  + A  FF W   + GF H + TYN M+ ILG+  +F+ +  +
Sbjct: 286 SFDHSTVRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVL 345

Query: 268 LEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++ M    +   +  TF+     +AAA   ++A+  +    ++  +      N L++ L 
Sbjct: 346 IQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLRDETSYSN-LIDALC 404

Query: 326 RSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGW--------CRVKNLMEAGRVWNEMI 375
             K   EA+ LF K      F  ++  Y ++L GW        C+      A +++ EM 
Sbjct: 405 EYKHVIEAEELFLKESKDLVFNDDVKIYNIILRGWFKNGVVEECKSGKPWRAVKLYKEMK 464

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
            KG + DVVA+N ++  +        +I++F   K  G  PNV +Y  +I   C+     
Sbjct: 465 KKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREXKEVGCEPNVVTYNTIIKLLCENG--- 521

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                       R+   Y +  +M E+G  P+ +TY+     ++    P + +R +  M+
Sbjct: 522 ------------RIREAYGVFDQMREKGYAPNVITYHCFFGCIE---KPKQILRTFDRMI 566

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
            SG +P + TY M+MK + + G       VW +M  +GC PD  +Y  LI  L+ +    
Sbjct: 567 NSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVD 626

Query: 556 EAYKYLEEMLEKGMKA-PVLD 575
            A KY EEML KG+ A P +D
Sbjct: 627 LARKYEEEMLAKGLSAKPRVD 647



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           G   N +++  K  K P  AV++YKEM + G +  +  YN ++++   +   +   +V+ 
Sbjct: 438 GWFKNGVVEECKSGK-PWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFR 496

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E    GC P+  +Y  +I  L    R  EAY   ++M EKG    V+ Y+ F
Sbjct: 497 EXKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCF 548


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 194/422 (45%), Gaps = 24/422 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +S+N V++ L R       A+  F    D+ G + +  TYNS++S L +AR  +    +L
Sbjct: 203 VSYNTVINGLLREGRQLDTAYHLFDQMLDQ-GLSPDVVTYNSIISALSKARAMDKAAVVL 261

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
             M + G +    T    ++ + ++ +   A+ +F+ M +   +  V T N L+  L ++
Sbjct: 262 VRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKN 321

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ +FD +  R   PN  TY  LL G+    +L++   + + M+  G +PD    
Sbjct: 322 GRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIF 381

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----------------- 429
           NI++    K GK  DA+ LF  M+ +G +P+  +Y I++   C                 
Sbjct: 382 NILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLIS 441

Query: 430 ---KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +A V+  LI G   R + D   +L  EM  RG  P+ + +N L+  +  + M   
Sbjct: 442 EGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVAR 501

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  I+  MVR   +  + TYN ++  Y   G  +   K+ + M+  G  P++ +Y  +I 
Sbjct: 502 AKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMIN 561

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG-KF 605
           G     R  +A+    +M  KG+   ++ Y+     L +A R+    EL   M  SG KF
Sbjct: 562 GYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKF 621

Query: 606 EV 607
           ++
Sbjct: 622 DI 623



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 21/265 (7%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI-----DKGFKPDVVAHNIMLEGLLKIGKR 399
           TPN+ +YT+LL G C      +A  + + M+       G+ PDVV++N ++ GLL+ G++
Sbjct: 159 TPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQ 218

Query: 400 SD-AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            D A  LF+ M  +G SP+V                 Y  +I+     R MD    +L  
Sbjct: 219 LDTAYHLFDQMLDQGLSPDV---------------VTYNSIISALSKARAMDKAAVVLVR 263

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + G  P+ +T+N+L+        P++A+ ++K M R G +P + TYN +M    + G 
Sbjct: 264 MVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGR 323

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
               RK++D M++RG  P+  +Y  L+ G  ++    + +  L+ M+  G++     +N 
Sbjct: 324 SMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNI 383

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
                ++ G+      L  KMR  G
Sbjct: 384 LIGTYTKHGKVDDAMLLFSKMRRQG 408



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 34/315 (10%)

Query: 288 AFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL----KH 342
           A AA  +   A   F EL+++    + VD +N  L +  R   P  A  LF ++    + 
Sbjct: 28  AAAAGTDSHHAHHAFDELLHRPTTSSIVD-LNRALSDAARHS-PAVAISLFRRMVMVARP 85

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           +  PNL TY+V++    RV +L  A      +I  G+  + +  + +L+ L    + S+A
Sbjct: 86  KVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEA 145

Query: 403 IKL-FEVMKAKGPSPNVRSYTIMIWKFCKQN-------------------------AAVY 436
           + +    M   G +PNV SYTI++   C +N                            Y
Sbjct: 146 MDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSY 205

Query: 437 TCLITGFGNR-RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
             +I G     R++D  Y L  +M ++G  PD +TYN++I  +   +  D+A  +   MV
Sbjct: 206 NTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMV 265

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           ++G  P   T+N ++  Y  +G       V+  M R G  PD  +Y  L+G L    RS 
Sbjct: 266 KNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSM 325

Query: 556 EAYKYLEEMLEKGMK 570
           EA K  + M+++G K
Sbjct: 326 EARKIFDSMVKRGHK 340



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 142/339 (41%), Gaps = 17/339 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +   +N ++    +  + +  + +  +M  +GL     T+ I M+A     +   A
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDA 432

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +A F  +              L+  L  R K  K  +L  + +     PN   +  LL  
Sbjct: 433 MAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNH 492

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  +++ M+    + DV+ +N +++G    GK  +A KL E M   G  PN
Sbjct: 493 LCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPN 552

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  MI  +CK                 R++  + L ++M  +G  P  +TY+ +++ 
Sbjct: 553 EVTYNTMINGYCKNG---------------RIEDAFSLFRQMASKGVNPGIVTYSTILQG 597

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   +    A  +Y  M++SG K  I TYN+I+    Q    +   +++  +       +
Sbjct: 598 LFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLE 657

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           + ++ ++I  L+   R  EA      +L +G+   V+ Y
Sbjct: 658 NRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 696



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 134/306 (43%), Gaps = 26/306 (8%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKL 340
           F   +N         +A  IF+LM +   +  V T N L++      K+ + A+LL   +
Sbjct: 486 FNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMV 545

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
                PN  TY  ++ G+C+   + +A  ++ +M  KG  P +V ++ +L+GL +  + +
Sbjct: 546 LDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTA 605

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            A +L+  M   G   ++ +Y I++   C+ N       I  F N   +D        +E
Sbjct: 606 AAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRI--FQNLYLIDF------HLE 657

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            R       T+N +I  +      DEA  ++  ++  G  P + TY ++MKS  + G  E
Sbjct: 658 NR-------TFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLE 710

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               ++  + + GC  +      L+G L+ +    +A  YL +          +D N F+
Sbjct: 711 ELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSK----------IDENNFS 760

Query: 581 ADLSRA 586
            + S A
Sbjct: 761 LEASTA 766



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 12/133 (9%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP+ +TY+ +I         D A      ++RSG+     T++ ++K+     + +   +
Sbjct: 88  PPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALC---DKKRTSE 144

Query: 525 VWDEMIRR----GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML-----EKGMKAPVLD 575
             D  +RR    GC P+  SYT+L+ GL  ++RS +A   L  M+       G    V+ 
Sbjct: 145 AMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVS 204

Query: 576 YNKFAADLSRAGR 588
           YN     L R GR
Sbjct: 205 YNTVINGLLREGR 217


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 172/364 (47%), Gaps = 18/364 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           F   +  Y+++++ L +  + E    ++E+M         T+   +      K    A+A
Sbjct: 76  FKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALA 135

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWC 359
             E M     K      N +L  L + +  +EA+LLF+K+ K R  PN+ TY  L+ G C
Sbjct: 136 TVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLC 195

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +   +  A  ++ EM  KG+ P  V++N +++G  K      A  +F+ M        VR
Sbjct: 196 KAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKM--------VR 247

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LM 478
           S        C  N   YT LI G     ++    ++L  M ++G  P+  TY+ LI    
Sbjct: 248 SN-------CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC 300

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
           K++++ DEA ++ ++MV  G  PT+ TYN+++ S  +    E   K++  M +R C P  
Sbjct: 301 KVRRV-DEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 359

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y  L+  L    +   A++   EM+ KG     + Y+  A  L+RAG+ +   EL +K
Sbjct: 360 VTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEK 419

Query: 599 MRFS 602
           M+ +
Sbjct: 420 MKLT 423



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 145/312 (46%), Gaps = 22/312 (7%)

Query: 313 GVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
           G  T N + +   ++ +L +  ++    ++  +T   + Y +L+   C+V N  EA ++ 
Sbjct: 9   GAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLL 68

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           + M  K FK   +A++ ++  L K+ +  +A +L E M    P P+  +Y  ++ + CK 
Sbjct: 69  HTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIVERLCKT 127

Query: 432 --------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                               +A +Y  +++G     +++    L ++M ++   P+ +TY
Sbjct: 128 KRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 187

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N LI  +      + A  ++KEM   G+ PT  +YN ++  + +  +    + V+D+M+R
Sbjct: 188 NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR 247

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
             C P+  +YT LI GL    +   A + L+ M++KG+   V  Y+       +  R   
Sbjct: 248 SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDE 307

Query: 592 LDELAQKMRFSG 603
             +L ++M   G
Sbjct: 308 AHKLLEQMVTQG 319



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 16/235 (6%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           R  P   T+  +  G+ +   L +   V+  M++ G+      + I++  L K+G   +A
Sbjct: 5   RVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEA 64

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            KL   M+ K       +Y+ +I   CK N               R++   +L+++M  R
Sbjct: 65  YKLLHTMRLKRFKRKAIAYSTIINWLCKLN---------------RVEEARELIEKM-AR 108

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
             PPD LTY  +++ +   K  D+A+   +EM   G KP    YN ++    Q    E  
Sbjct: 109 YAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 168

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           R ++++M+++   P+  +Y  LI GL    R   AY+  +EM  KG     + YN
Sbjct: 169 RLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYN 223



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++  L ++ + +    +L+ M +KG+  ++ T+   ++ F   +   +A  + 
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLL 312

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           E M        V T N LL +L R+   ++A  LF  + + R  P + TY  LL   C  
Sbjct: 313 EQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHH 372

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           K L  A R++ EMI KG  PD + ++ +  GL + GK  +A +L E MK    +P  RS
Sbjct: 373 KQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNPFGRS 431



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 41/99 (41%)

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   T+N +   + + G  E  ++V+  M+  G     + Y +LI  L       EAYK 
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           L  M  K  K   + Y+     L +  R     EL +KM
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM 106


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 21/294 (7%)

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+  L GR +      +L D  +    P++ TYT+LL   C+     +A ++ +EM
Sbjct: 168 TYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEM 227

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------W 426
            DKG  PD+V +N++L G+ + G+  DA++  + + + G  PN  SY I++        W
Sbjct: 228 HDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERW 287

Query: 427 ------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                       K C  N   +  LI+    R  ++   ++L++M + GC P+ L+YN L
Sbjct: 288 EDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPL 347

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +     QK   +A+   + MV  G  P I +YN ++ +  + G  ++  ++  ++  +GC
Sbjct: 348 LHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGC 407

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P   SY  +I GL    ++ EA + L+EM  KG++  ++ Y+  A+ L R  R
Sbjct: 408 SPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDR 461



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 191/445 (42%), Gaps = 36/445 (8%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           E++   +++D L  L+    A +  C           ++++   + R A      A   P
Sbjct: 82  ELDDALRLVDSLAGLNPPSPAAVGPCAA---------LIKKLCASGRTADARRVLAASGP 132

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
               +   YN+M++    A Q +    ++ +M  +      T+   +           A+
Sbjct: 133 ----DVMVYNAMVAGYCGAGQLDAARRLVADMPVEP--DAYTYNTLIRGLCGRGRTSNAL 186

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+ E M +      V T   LLE   +    K+A  L D++  +   P++ TY V+L G 
Sbjct: 187 AVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGI 246

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + +A      +   G +P+ V++NI+L+GL    +  DA KL E M  KG  PNV
Sbjct: 247 CQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            ++ ++I   C++                    N+  Y  L+  F  ++++    + ++ 
Sbjct: 307 VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVEL 366

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  RGC PD ++YN L+  +      D A+ +  ++   G  P + +YN ++    + G 
Sbjct: 367 MVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGK 426

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   ++ DEM  +G  PD  +Y+ +  GL  +DR  EA +   ++ + G++     YN 
Sbjct: 427 TKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNA 486

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
               L +   ++   +L   M  SG
Sbjct: 487 ILLGLCKRRETHNAIDLFAYMISSG 511



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 160/350 (45%), Gaps = 18/350 (5%)

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSME 280
           R   + A +      DK G A +  TYN +++ + +  + E  +  L+ +   G   +  
Sbjct: 214 RSGYKQAMKLLDEMHDK-GCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV 272

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           ++ I +     A+  + A  + E M        V T N L+  L R  L + A  + +++
Sbjct: 273 SYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM 332

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            ++  TPN  +Y  LL  +C+ K + +A      M+ +G  PD+V++N +L  L + G+ 
Sbjct: 333 PQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEV 392

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
             AI+L   +K KG SP + SY                 +I G     +     +LL EM
Sbjct: 393 DVAIELLHQLKDKGCSPVLISYNT---------------VIDGLTKAGKTKEALELLDEM 437

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             +G  PD +TY+ +   +  +   +EAVR + ++   G +PT   YN I+    +    
Sbjct: 438 TSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRET 497

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                ++  MI  GC P++++YT+L+ GL  +    EA +   ++  +G+
Sbjct: 498 HNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGV 547


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 163/351 (46%), Gaps = 22/351 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ +   + + T++S+ ++M   G+ S + T  I +N+F          ++   + 
Sbjct: 77  FAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIF 136

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +    T   L+  L       EA  LFDK+    F PN  TY  L+ G C+V N  
Sbjct: 137 KLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSR 196

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M+ K  +P+V+ +N +++ L K  + ++A+ +F  M AKG SPNV +Y  +I
Sbjct: 197 AAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSII 256

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK                     N  ++T L+        + I +D++  M +RG  
Sbjct: 257 HGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVE 316

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY AL+    ++   DEA +++  MVR G  P + +Y+ ++  Y +    +    +
Sbjct: 317 PDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYL 376

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           ++EM +R   P+  +Y  LI GL    R  +A     EM+  G    ++ Y
Sbjct: 377 FEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTY 427



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 20/394 (5%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           I  +CKV +   ++      V   C  N +++N ++D L + R     A   F     K 
Sbjct: 186 IHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE-ALNIFSEMIAK- 243

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + N  TYNS++  L +  +++ + +++ EM +  ++ ++  F   ++A         A
Sbjct: 244 GISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIA 303

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + ++M +   +  V T   L++         EA  +FD +  +   PN+ +Y+ L+ G
Sbjct: 304 HDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLING 363

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+++ + +A  ++ EM  +   P++V +N ++ GL  +G+  DAI LF  M A G  P+
Sbjct: 364 YCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPD 423

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y I++   CK                R +D    +LK +E     PD  +YN +I  
Sbjct: 424 LVTYRILLDYLCKT---------------RHLDQAMAMLKAIEGSNLAPDIQSYNIVIDG 468

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           M      + A  ++  +   G  P + TY +++      G      K++ EM   GC PD
Sbjct: 469 MCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPD 528

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           D +Y ++  G +  + +  A + L+EML +G  A
Sbjct: 529 DCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSA 562



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 165/382 (43%), Gaps = 22/382 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N  TY +++  L +       + +L  M +K    ++ T+   ++     ++  +A
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + IF  M        V T N ++  L + S+    A L+ + +  +  PN+  +T L+  
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  V + MI +G +PDVV +  +++G     +  +A K+F+ M  KG +PN
Sbjct: 294 LCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPN 353

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V SY+ +I  +CK                     N   Y  LI G  +  R+     L  
Sbjct: 354 VISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFH 413

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM   G  PD +TY  L+  +   +  D+A+ + K +  S   P I +YN+++    + G
Sbjct: 414 EMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVG 473

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    ++  +  +G  PD  +YT++I GL  Q    EA K   EM   G       YN
Sbjct: 474 ELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYN 533

Query: 578 KFAADLSRAGRSYVLDELAQKM 599
                  R   +    +L Q+M
Sbjct: 534 LITRGFLRNNETLSAIQLLQEM 555



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 121/261 (46%), Gaps = 17/261 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G A N  +Y+++++   + ++ +  + + EEM ++ L+ ++ T+   ++        +
Sbjct: 347 RKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLR 406

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL 355
            A+A+F  M        + T   LL+ L +++   +A  +   ++     P++ +Y +++
Sbjct: 407 DAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVI 466

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G CRV  L  AG +++ +  KG  PDV  + IM+ GL   G  ++A KLF  M   G S
Sbjct: 467 DGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCS 526

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +Y ++   F + N  +                   LL+EM  RG   D  T   ++
Sbjct: 527 PDDCTYNLITRGFLRNNETLSA---------------IQLLQEMLGRGFSADASTITLIV 571

Query: 476 KLMKIQKMPDEAVRIYKEMVR 496
           +++    +     +I  E V+
Sbjct: 572 EMLSDDGLDQSVKQILHEFVQ 592



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 15/220 (6%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA   +N M+     P VV    +L  +  +   S  + L + M + G   +V +  I+I
Sbjct: 57  EALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVI 116

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
             FC  N               R+D  + +L ++ + G  PD  T+  LI+ + ++    
Sbjct: 117 NSFCHLN---------------RVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIG 161

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ ++ +MV  GF+P   TY  ++    + GN     ++   M+++ C P+  +Y  +I
Sbjct: 162 EALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTII 221

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             L    +  EA     EM+ KG+   V  YN     L +
Sbjct: 222 DCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCK 261



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 59/135 (43%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  + +  ++  +   K     + + K+M   G    ++T  +++ S+      + G  
Sbjct: 71  PPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFS 130

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++ + G  PD  ++T LI GL  + + GEA    ++M+ +G +   + Y      L 
Sbjct: 131 VLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLC 190

Query: 585 RAGRSYVLDELAQKM 599
           + G S     L + M
Sbjct: 191 KVGNSRAAIRLLRSM 205


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 209/521 (40%), Gaps = 101/521 (19%)

Query: 165 SEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHA 224
           S++ S +++       + ++  ++D   +++ N++       I LS + V  +L      
Sbjct: 62  SDVASRTHQDLKPSPWVNQILALLDGSSNMESNLDTFCHMFLIKLSPSFVSFILRSTELQ 121

Query: 225 RRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL----- 277
            +P  A RFF WAG +  + HN   Y S++ +L      +++ S+  +  E GL+     
Sbjct: 122 TKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYS 181

Query: 278 -------------------------------SMETFKIAMNAFAAAKERKKAVAIFELMN 306
                                          S+ ++   +N    +K  + A  +FE+M 
Sbjct: 182 SNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVME 241

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK----HRFTPNLTTY----------- 351
             K    V T N +++        ++A   F+KLK        P+  TY           
Sbjct: 242 NGKIGPDVVTYNTMIKGYCEVGKTRKA---FEKLKAMELRNVAPDKITYMTLIQACYAEG 298

Query: 352 ------------------------TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
                                   ++++GG C+    +E   V+  MI KG K +V  + 
Sbjct: 299 DFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYT 358

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
            +++   K G   +A+ LF+ MK +G  P+  +Y +++   CK                 
Sbjct: 359 ALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGK 418

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               NA  Y+ LI G G   R+D    +  EM ++GCPPD   YNALI  +      DEA
Sbjct: 419 GVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEA 478

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + + K M   G   T++TY +++   F+    E    +WD MI +G  P   ++  L  G
Sbjct: 479 LALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTG 538

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L    +   A K L+EM   G+  P   ++     L +AGR
Sbjct: 539 LCLSGKVARACKILDEMAPMGV-IPETAFDDMINILCKAGR 578



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 4/214 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERK 296
           K G   +  TY  +++ L ++ + +  +  +E    KG+     F  ++ +    +    
Sbjct: 382 KEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVD 441

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL 355
           +A  IF  M K          N L++ L +     EA  L  +++       + TYT+L+
Sbjct: 442 EAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILI 501

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  R     EA  +W+ MIDKG  P   A   +  GL   GK + A K+ + M   G  
Sbjct: 502 TGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVI 561

Query: 416 PNVRSYTIMIWKFCKQNAAVYTC-LITGFGNRRR 448
           P   ++  MI   CK       C L  G  +R R
Sbjct: 562 PET-AFDDMINILCKAGRIKEACKLADGIVDRGR 594


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N   YN+++  + + +       +  EM  KG+   + T+   ++ F    +   A+ +F
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
             M     K  V T N L+    +    KE + +FD + K    PN  TY  L+ G+C V
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K + +A  ++N M   G  PD+ +++IM+ G  KI K  +A+ LF+ M  K   P+V   
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV--- 400

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKI 480
                         Y+ LI G     R+     L+ +M +RG PP   TYN+++  L KI
Sbjct: 401 ------------VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKI 448

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            ++ D+A+ +  ++   G +P ++TY++++K   Q+G  E  RKV++ ++ +G   + ++
Sbjct: 449 HQV-DKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDT 507

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           YT++I G   +    EA   L +M + G
Sbjct: 508 YTIMIQGFCVEGLFNEALALLSKMEDNG 535



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 17/266 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   N  TYNS+M      ++     S+   M + G+   ++++ I +N F   K+  
Sbjct: 323 KQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ +F+ M++      V T + L++ L +S     A  L D++  R   P + TY  +L
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSIL 442

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C++  + +A  +  ++ DKG +P++  ++I+++GL + GK  DA K+FE +  KG +
Sbjct: 443 DALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHN 502

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            NV +YTIMI  FC          + G  N         LL +ME+ GC PD  TY  +I
Sbjct: 503 LNVDTYTIMIQGFC----------VEGLFNE-----ALALLSKMEDNGCIPDAKTYEIII 547

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKP 501
             +  +   D A ++ +EM+  G +P
Sbjct: 548 LSLFKKDENDMAEKLLREMIARGVRP 573



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 172/396 (43%), Gaps = 40/396 (10%)

Query: 210 SHNLVVDVLERF-----RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264
           S+N V D +  F     R+   PAF F                 N ++  L +++ + T+
Sbjct: 62  SNNDVDDAVSLFNRLLRRNTTPPAFEF-----------------NKILGSLVKSKHYHTV 104

Query: 265 VSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           + + ++M  +G+  ++    I +N F        A ++F  + K  +     T   L++ 
Sbjct: 105 LYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKG 164

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L      ++A L  DK+    F  +  +Y  L+ G C+V     A  +   +     +P+
Sbjct: 165 LCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           VV +N +++ + K+   ++A  LF  M +KG SP+V +Y+ +I  FC          I G
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC----------ILG 274

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                +++   DL  +M      PD  T+N L+          E   ++  M++ G KP 
Sbjct: 275 -----KLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN +M  Y         + +++ M + G  PD  SY+++I G     +  EA    +
Sbjct: 330 FVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQ 597
           EM  K +   V+ Y+     LS++GR SY L  + Q
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 180/406 (44%), Gaps = 58/406 (14%)

Query: 221 FRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           F H  +  F F       K G+  N+ T N++M  L    + +  +   +++  +G  + 
Sbjct: 55  FCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMD 114

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
             ++   +N      E + A+ +  ++     +  V   N +++ L + KL  EA  L+ 
Sbjct: 115 QVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYS 174

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-------------------- 377
           ++  R   PN+ TY+ L+ G+C    LMEA  + NEMI K                    
Sbjct: 175 EMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEG 234

Query: 378 ---------------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
                          G KP+VV++N +++G   IG+  +A ++F  M  KG +PNV SY 
Sbjct: 235 KVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYN 294

Query: 423 IMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           IMI + CK                     N   Y+ LI GF    R+    DLLKEM  R
Sbjct: 295 IMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G P D +TY +L+  +   +  D+A  ++ +M   G +P  +TY  ++    + G ++  
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNA 414

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +K++  ++ +GC  +  +Y V+I GL  +    EA     +M E G
Sbjct: 415 QKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 167/359 (46%), Gaps = 17/359 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++  L + + + T +S+ ++M  KG+   + T  I +N F    +   +  +   + 
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    T+N L++ L      K++    DK+  + F  +  +Y  LL G C++    
Sbjct: 73  KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETR 132

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A ++   + D+  +P+VV +N +++GL K    ++A  L+  M A+G  PNV +Y+ +I
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLI 192

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
           + FC         L+  FG          LL EM  +   P+  TY  L+  +  +    
Sbjct: 193 YGFCLAGQ-----LMEAFG----------LLNEMILKNINPNVYTYTILMDALCKEGKVK 237

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +   M + G KP + +YN +M  Y   G  +  ++++  M+++G  P+  SY ++I
Sbjct: 238 EAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMI 297

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
             L    R  EA   L E+L K M    + Y+       + GR     +L ++M   G+
Sbjct: 298 DRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 27/355 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           D  G   N  TY++++     A Q      +L EM  K +  ++ T+ I M+A     + 
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKV 236

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           K+A  +  +M K   K  V + N L++        + A+ +F  +  +   PN+ +Y ++
Sbjct: 237 KEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIM 296

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+ K + EA  +  E++ K   P+ V ++ +++G  K+G+ + A+ L + M  +G 
Sbjct: 297 IDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
             +V +YT ++   CK                     N   YT LI G     R      
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQK 416

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L + +  +GC  +  TYN +I  +  + M DEA+ +  +M  +G  P   T+ +I++S F
Sbjct: 417 LFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLF 476

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    +   K+  EMI +      + +     G  S + + +A K L EM+ KG+
Sbjct: 477 EKDQNDKAEKLLHEMIAKDLLRFRDFH-----GERSPNENDKAEKLLHEMIAKGL 526



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 120/238 (50%), Gaps = 13/238 (5%)

Query: 196 RNMEAVLDECGIN---LSHNLVVD---VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYN 249
           +N+ AV+ + G+    +S+N ++D   ++   ++A++  F      G  P    N  +YN
Sbjct: 240 KNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQ-MFHTMVQKGVNP----NVYSYN 294

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
            M+  L ++++ +  +++L E+  K ++ +  T+   ++ F        A+ + + M   
Sbjct: 295 IMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEA 367
              A V T   LL+ L +++   +A  LF K+K R   PN  TYT L+ G C+      A
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNA 414

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            +++  ++ KG + +V  +N+M+ GL K G   +A+ +   M+  G  P+  ++ I+I
Sbjct: 415 QKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 191/399 (47%), Gaps = 31/399 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++  L +A + +  +++LE+M EKG   +++T+ + ++  + A   ++A  IF  M
Sbjct: 79  TYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDM 138

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFT--PNLTTYTVLLGGWCR 360
                +        L++ L +S  P+EA  L+ +    KH  T  P++ TYT L+ G C+
Sbjct: 139 LGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCK 198

Query: 361 VKNLMEAGRVWN-EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
              ++EA +V++ E +++GF PD V +  +++GL K+G+  +  + F  M+ +G  P+  
Sbjct: 199 AGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAV 258

Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y  +I  F K                     +   Y  ++ G     R+   Y     M
Sbjct: 259 TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAM 318

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           EERGC    +TY+AL+     +     AV +++ M+  G +P + +YN+I++   + G  
Sbjct: 319 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKL 378

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-DRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                 ++++++R  CPD  ++   + GL  + D   +  +  E M+ +G    +  Y+ 
Sbjct: 379 AKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSI 438

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG---KFEVSNVLARW 614
               + RAG   V  E+ ++M   G      V N L RW
Sbjct: 439 LMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRW 477



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 27/369 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            +  +++ L R ++ +   S+LE     G      T+ + ++    A+    A  + + M
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGGWCRVKNL 364
           ++ K      T   L++ L ++    EA  + +++  +  +P L TYTV++ G  +   +
Sbjct: 69  DEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRV 128

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK----GPSPNVRS 420
            EA R++ +M+  G +PD   +  +++GL K GK  +A  L++   A+       P+V +
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVT 188

Query: 421 YTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           YT +I   CK                      +A  YT +I G     R++   +   EM
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             RG  PD +TY ALI      KM  +A R+Y++M++SG   +  TYN+I+    + G  
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 308

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                 +  M  RGC     +Y+ L+ G  S+     A +    ML++G +  ++ YN  
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII 368

Query: 580 AADLSRAGR 588
              L RAG+
Sbjct: 369 IRGLCRAGK 377



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 128/304 (42%), Gaps = 60/304 (19%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI---------------- 388
           +P++  +TV++ G CR K L EA  V    +  G +PD V +N+                
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 389 -------------------MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI------ 423
                              +++GLLK G+  +A+ + E M  KG SP +++YT+      
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 424 --------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCP 465
                         M+   C+ +A VYT LI G     + +  Y L KE   R       
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIY-KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PD +TY +LI  +       EA +++  E V  GF P   TY  I+    + G  E G +
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
            + EM  RG  PD  +Y  LI G +      +A++   +ML+ G     + YN     L 
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 585 RAGR 588
           +AGR
Sbjct: 304 KAGR 307



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C  +   +T +I G    +R+D  + +L+     GC PD +TYN  I  +   +  D+A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++ K+M      PT  TY  ++    + G  +    V ++M+ +G  P   +YTV+I GL
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
               R  EA +   +ML  G +     Y      L ++G+
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGK 162



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 21/262 (8%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
            +++N+++D L +          F   A ++ G      TY+++M            V +
Sbjct: 292 TVTYNIILDGLCKAGRVAEAYATFL--AMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 349

Query: 268 LEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-G 325
              M ++G   ++ ++ I +     A +  KA   FE + + +    V T N  L  L  
Sbjct: 350 FRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ 409

Query: 326 RSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           R     +   LF+ +  + T PNL +Y++L+ G CR   L  A  ++ EM+ +G  PDVV
Sbjct: 410 RLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVV 469

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
             N ++  L   G+  +A+++F  ++ +  +P+  SY    W            L+ G  
Sbjct: 470 VFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSY----WS-----------LLDGLS 513

Query: 445 NRRRMDIVYDLLKEMEERGCPP 466
              RM+    L   M+ +GC P
Sbjct: 514 RCERMEEARLLSFHMKLQGCAP 535



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C PD  ++TV+I GL  + R  EA+  LE  +  G +   + YN F   L +A R     
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 594 ELAQKM 599
           +L +KM
Sbjct: 63  QLLKKM 68


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 165/353 (46%), Gaps = 17/353 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N +TY +++S L R  + E  + +  +M ++GL+ +  T+   +N         
Sbjct: 331 KRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFS 390

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A+ IF  M  +   A   T N +++ L      ++A +LF+K LK    P + TY  L+
Sbjct: 391 TALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+    N+  A R+ + M + G +PD   +N ++ G  K GK   A   F+ M   G +
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 510

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  SYT                LI G     ++DI   LLK MEE GC P+  +YNA+I
Sbjct: 511 PNPVSYT---------------ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +  +    EA +I  +MV  G  P + TY  ++    + G  +   K++ +M +R C 
Sbjct: 556 NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 615

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           P+  +Y+ LI GL  + ++ EA   L+EM  KG+    + +          GR
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGR 668



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 185/419 (44%), Gaps = 52/419 (12%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET--------------------MVSM 267
             +FF W   +P + HN   + SM++ L R R F                      +   
Sbjct: 91  VIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADF 150

Query: 268 LEEMGEKG----LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           L E+   G    L S  T  I +  F   +  +    +++ M     +  + T N L+  
Sbjct: 151 LNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARN---LYKQMLNSGIQPSLLTFNTLINI 207

Query: 324 LGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +    +EA+L+  ++ ++  +P++ TYT L+ G CR +NL  A  V++ M+ +G  P+
Sbjct: 208 LSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPN 267

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------------- 428
            V ++ ++ GL   G+  +A+ + E M  KG  P V +YT+ I                 
Sbjct: 268 SVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVA 327

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                 C+ N   YT LI+G     ++++   L  +M + G  P+ +TYNALI  + +  
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A++I+  M   G      TYN I+K     G+ E    ++++M++ G  P   +Y 
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQ 597
            LI G +++     A + L+ M E G +     YN+  +  S+ G+    S+   E+ +
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVE 506



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 159/354 (44%), Gaps = 17/354 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   NS TY+++++ L    + +  + MLEEM EKG+  ++ T+ + + A  A +  +
Sbjct: 261 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A+ +   M K   +  V T   L+  L R  KL     L    LK    PN  TY  L+
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C       A ++++ M   G   +   +N +++GL   G    A+ LFE M   GP 
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P V                 Y  LI G+  +  ++    LL  M+E GC PD  TYN L+
Sbjct: 441 PTV---------------VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 485

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    + A   ++EMV  G  P   +Y  ++  + + G  ++   +   M   GC 
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           P+  SY  +I GL  ++R  EA K  ++M+E+G+   V+ Y      L R GR+
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRT 599



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERK 296
           K G   N+ TYN++++ L    +F T + +   M G   L + +T+   +       + +
Sbjct: 366 KEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIE 425

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KA+ +FE M K      V T N L+   L +  +   A+LL    ++   P+  TY  L+
Sbjct: 426 KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 485

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+ +   L  A   + EM++ G  P+ V++  +++G  K GK   A+ L + M+  G +
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 416 PNVRSYTIMI------------WKFCKQ--------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV SY  +I             K C +        N   YT LI G     R    + +
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +ME+R C P+  TY++LI  +  +   DEA  + KEM R G  P   T+  ++  +  
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV 665

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            G  +    +   M+  GC P+  +Y+VL+ GL
Sbjct: 666 LGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 130/317 (41%), Gaps = 34/317 (10%)

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           A  K+ +  +  F  ++K  F      +NC +  L R        L+ D++   F P   
Sbjct: 83  AVHKDTESVIQFFYWISKRPFYK--HNMNCFISMLNR--------LVRDRV---FAPA-D 128

Query: 350 TYTVLLGGWCRVKNLMEAGRV---WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
              +L+   CR  N  E  RV    NE+   GF   + + N +L  L K      A  L+
Sbjct: 129 HIRILMIKACR--NEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 186

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G  P++ ++  +I    K+            G  R  +++   L ++ +    P
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKK------------GKVREAELI---LSQIFQYDLSP 231

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D  TY +LI      +  D A  ++  MV+ G  P   TY+ ++      G  +    + 
Sbjct: 232 DVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDML 291

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +EMI +G  P   +YT+ I  L + +   EA + +  M ++G +  V  Y    + LSR 
Sbjct: 292 EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351

Query: 587 GRSYVLDELAQKMRFSG 603
           G+  V   L  KM   G
Sbjct: 352 GKLEVAIGLYHKMLKEG 368


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 189/453 (41%), Gaps = 72/453 (15%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           NL  N  +D+  R  H+R             P     +R    ++S++ + ++F+ ++S+
Sbjct: 60  NLQFNEALDLFTRMVHSR-----------PLPSIVDFTR----LLSVIAKMKRFDVVISL 104

Query: 268 LEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            E+M   G+   + T  I MN    + +  +A      M K  F+  + T   LL     
Sbjct: 105 FEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCH 164

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
               ++A  LFD++    F PN+ TYT L+   C+ ++L  A  ++N+M D G +P+VV 
Sbjct: 165 WNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVT 224

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV--------------------------- 418
           +N ++ GL +IG+ SDA  L   M  +G  PNV                           
Sbjct: 225 YNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 419 --------RSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMD 450
                    +YT +I   C                      N   YT LI GF   +R++
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVE 344

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
               +  EM ++G   + +TY  LI+   +   PD A  ++ +M      P I TYN+++
Sbjct: 345 DGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLL 404

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
                 G  E    ++  M +R    +  +YT++I G+    +  +A+     +  KGMK
Sbjct: 405 DGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMK 464

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             V+ Y    +   R G  +  D L +KM+  G
Sbjct: 465 PNVITYTTMISGFCRRGFIHEADALFKKMKEDG 497



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 149/315 (47%), Gaps = 24/315 (7%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++  ++  L + RH    A   F   GD  G   N  TYNS++S L    ++     +L
Sbjct: 188 VTYTTLIHCLCKNRHLNH-AVEIFNQMGDN-GIRPNVVTYNSLVSGLCEIGRWSDAAWLL 245

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-GR 326
            +M ++G+  ++ TF   ++AF    +  +A  ++++M +      V T   L+  L   
Sbjct: 246 RDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTY 305

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            +L +  Q+ +    + + PN  TYT L+ G+C+ K + +  +++ EM  KG   + + +
Sbjct: 306 GRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITY 365

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI---------------MIWKFCKQ 431
            ++++G   +G+   A ++F  M ++   P++R+Y +               MI+K+ ++
Sbjct: 366 TVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRK 425

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N   YT +I G     +++  +DL   +  +G  P+ +TY  +I     +    E
Sbjct: 426 REMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHE 485

Query: 487 AVRIYKEMVRSGFKP 501
           A  ++K+M   GF P
Sbjct: 486 ADALFKKMKEDGFLP 500



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G+  N  TY +++    ++++ E    +  EM +KGL++   T+ + +  +        A
Sbjct: 322 GYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVA 381

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M   +    + T N LL+ L  +   ++A ++F  ++ R    N+ TYT+++ G
Sbjct: 382 QEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQG 441

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V  + +A  ++  +  KG KP+V+ +  M+ G  + G   +A  LF+ MK  G  PN
Sbjct: 442 MCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 146/294 (49%), Gaps = 21/294 (7%)

Query: 316 TINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+  L GR +      +L D L+    P++ TYT+LL   C+     +A ++ +EM
Sbjct: 154 TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----- 429
            DKG  PD+V +N+++ G+ + G+  DA++  + + + G  PN  SY I++   C     
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERW 273

Query: 430 ---------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            N   +  LI+    R  ++   ++L ++ + GC P+ L+YN +
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +     QK  D A+   + MV SG  P I +YN ++ +  + G  +   ++  ++  +GC
Sbjct: 334 LHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGC 393

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P   SY  +I GL    ++ EA + L EM+ KG++  ++ Y+  ++ L R GR
Sbjct: 394 TPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGR 447



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 159/371 (42%), Gaps = 36/371 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-----EKGLLSMETFKIAMNAFAAAKE 294
              H S   N  + +L R    E  + ++E M        G  +    K+  +   A   
Sbjct: 51  AVPHRSAASNDRLRVLVRRGDLEEAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAEAR 110

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGR--SKLPKEAQLLFDKLKHRFTPNLTTYT 352
           R  A    ++M+     AG   +   L+N  R  + +P E             P+  TY 
Sbjct: 111 RVLASCEPDVMSYNAMVAGY-CVTGQLDNARRLVAAMPME-------------PDTYTYN 156

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G C       A  V ++M+ +G  PDVV + I+LE   K      A+KL + M+ K
Sbjct: 157 TLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDK 216

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G +P++ +Y +++   C++                R+D   + LK +   GC P+ ++YN
Sbjct: 217 GCAPDIVTYNVVVNGICQEG---------------RVDDAMEFLKSLPSYGCEPNTVSYN 261

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            ++K +   +  ++A ++  EM R G  P + T+NM++    + G  E   ++ D++ + 
Sbjct: 262 IVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKY 321

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           GC P+  SY  ++     Q +   A  ++E M+  G    ++ YN     L R G     
Sbjct: 322 GCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAA 381

Query: 593 DELAQKMRFSG 603
            EL  +++  G
Sbjct: 382 VELLHQLKDKG 392



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 192/431 (44%), Gaps = 33/431 (7%)

Query: 164 ESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEA--VLDECGIN-LSHNLVVD---V 217
           E  I  V   +  +P        +I +L +  R  EA  VL  C  + +S+N +V    V
Sbjct: 73  EEAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAEARRVLASCEPDVMSYNAMVAGYCV 132

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGL 276
             +  +ARR            P    ++ TYN+++  + GR R  +  +++L++M  +G 
Sbjct: 133 TGQLDNARR-------LVAAMP-MEPDTYTYNTLIRGLCGRGRT-DNALAVLDDMLRRGC 183

Query: 277 LS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
           +  + T+ I + A       K+AV + + M        + T N ++  + +     +A  
Sbjct: 184 VPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAME 243

Query: 336 LFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
               L  +   PN  +Y ++L G C  +   +A ++  EM  KG  P+VV  N+++  L 
Sbjct: 244 FLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLC 303

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           + G    A+++ + +   G +PN  SY  ++  FCKQ               ++MD    
Sbjct: 304 RRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQ---------------KKMDRAMA 348

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
            ++ M   GC PD ++YN L+  +      D AV +  ++   G  P + +YN ++    
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 408

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E   ++ +EM+ +G  PD  +Y+ +  GL  + R  EA K   ++ + G++   +
Sbjct: 409 KAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTV 468

Query: 575 DYNKFAADLSR 585
            YN     L +
Sbjct: 469 LYNAILLGLCK 479



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 22/261 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  T+N ++S L R    E  + +L+++ + G      ++   ++AF   K+  +A
Sbjct: 287 GRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRA 346

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +A  ELM        + + N LL  L R      A  L  +LK +  TP L +Y  ++ G
Sbjct: 347 MAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +     EA  + NEM+ KG +PD++ ++ +  GL + G+  +AIK F  ++  G  PN
Sbjct: 407 LTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPN 466

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
              Y  ++   CK+                    N + YT LI G      +    +++ 
Sbjct: 467 TVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMA 526

Query: 458 EMEERGCPPDGLTYNALIKLM 478
           E+  RG     L     I+L+
Sbjct: 527 ELCSRGVVSKTLVNKGAIRLL 547



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 22/246 (8%)

Query: 378 GFKPDVVAH-----NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM-------- 424
              P+ V H     N  L  L++ G   +AI+L E M    PS       ++        
Sbjct: 46  AVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMAGLEPSAAGPCAALIKKLCASGR 105

Query: 425 ------IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                 +   C+ +   Y  ++ G+    ++D    L+  M      PD  TYN LI+ +
Sbjct: 106 TAEARRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGL 162

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             +   D A+ +  +M+R G  P + TY +++++  +   Y+   K+ DEM  +GC PD 
Sbjct: 163 CGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDI 222

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y V++ G+  + R  +A ++L+ +   G +   + YN     L  A R    ++L  +
Sbjct: 223 VTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 282

Query: 599 MRFSGK 604
           M   G+
Sbjct: 283 MSRKGR 288



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 10/222 (4%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++ N+++  L R R    PA         K G   NS +YN ++    + ++ +  ++ +
Sbjct: 293 VTFNMLISFLCR-RGLVEPAMEILDQI-PKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 350

Query: 269 EEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI---NCLLENL 324
           E M   G    + ++   + A     E   AV   EL+++ K K     +   N +++ L
Sbjct: 351 ELMVSSGCYPDIVSYNTLLTALCRGGEVDAAV---ELLHQLKDKGCTPVLISYNTVIDGL 407

Query: 325 GRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            ++   +EA +LL + +     P++ TY+ +  G CR   + EA + + ++ D G +P+ 
Sbjct: 408 TKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNT 467

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           V +N +L GL K      AI LF  M + G  PN  +YTI+I
Sbjct: 468 VLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILI 509


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 177/376 (47%), Gaps = 53/376 (14%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM---------------- 271
           A   F  A  +PGF H+  TY++++  LGRARQF+TM  ++++M                
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDII 175

Query: 272 ---GEKGLLS-----------------METFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
              GE G+ +                  + F + +      K  + A+++F+ ++++   
Sbjct: 176 EIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGIS 235

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               T N L+     S     A  LF+K+ K    P++ TY++L+ G CR   +  A  V
Sbjct: 236 PNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGV 295

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
            +EM++KG+ PD + +N +L  L +     +A +L   MK  G +P+V +Y  +I  FC+
Sbjct: 296 LDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCR 355

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
           +  A+  C I               L++M E GC P+ L+Y  L+  +  +   DEA   
Sbjct: 356 EGRALDACQI---------------LRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDF 400

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            +EM+ +GF P I  Y++++      G      +V   M ++   P +++++VL+   I 
Sbjct: 401 VEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMR-IC 459

Query: 551 QDRSGEAYKYLEEMLE 566
           +D   EA + ++++ E
Sbjct: 460 EDSQTEARELVDKLSE 475



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 26/315 (8%)

Query: 298 AVAIFELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPNLTTYTV 353
           A+ IFE+ ++   FK    T + L+  LGR++  K  + L  +++     +TP L    +
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDII 175

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            + G   + N  EA + +++M++ G++P     N++L  L++      A+ LF+ +   G
Sbjct: 176 EIYGEVGMPN--EAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFG 233

Query: 414 PSPNVRSYTIMIWKFC----------------KQ----NAAVYTCLITGFGNRRRMDIVY 453
            SPN R+Y I+I   C                KQ    +   Y+ L+ G   + ++    
Sbjct: 234 ISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTAL 293

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            +L EM  +G  PD LTYN L+  +  +    EA R+  +M   G  P +  YN ++  +
Sbjct: 294 GVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGF 353

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G      ++  +M   GC P+  SY  L+ GL ++ +  EA  ++EEM+  G    +
Sbjct: 354 CREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHI 413

Query: 574 LDYNKFAADLSRAGR 588
             Y+     L   G+
Sbjct: 414 SIYHLLITGLCNEGK 428



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 111/262 (42%), Gaps = 19/262 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG--FKPDVVAHNIMLEGLLKIGKRSD 401
           F  + +TY  L+    R +       +  +M   G  + P +    I + G  ++G  ++
Sbjct: 129 FKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYG--EVGMPNE 186

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           AIK F  M   G  P  + + +++    +     + CL T             L K++ E
Sbjct: 187 AIKAFHQMLEFGYEPLAKHFNVLLIVLIE-----HKCLETAL----------SLFKKLHE 231

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P+  TYN LI+          A  ++ +M + G  P + TY+++M+   +    + 
Sbjct: 232 FGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKT 291

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
              V DEM+ +G  PD  +Y  L+  L  +    EAY+ L +M   G    V++YN    
Sbjct: 292 ALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVIT 351

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
              R GR+    ++ + M  +G
Sbjct: 352 GFCREGRALDACQILRDMPENG 373


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 167/352 (47%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G + +  +++S++ +  R    +  +    +M   GL+     + I +N +       +A
Sbjct: 320 GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEA 379

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I + M +      V   N +L  L + KL  +A  LFD++  R   P+  T+T L+ G
Sbjct: 380 LEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHG 439

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  N+ +A  ++  M  K  KPD+V +NI+++G  K  +   A +L+  M ++   PN
Sbjct: 440 HCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPN 499

Query: 418 VRSYTIMIWKFCKQN------------------AAVYTC--LITGFGNRRRMDIVYDLLK 457
             SY I++  +C                       + TC  +I G+     +    + L 
Sbjct: 500 HISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLG 559

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  PD +TYN LI      +  D+A  +  +M   G +P + TYN+I+  + + G
Sbjct: 560 KMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQG 619

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +    +  +MI RG  PD ++YT LI G +SQD   EA+++ +EML++G 
Sbjct: 620 RMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGF 671



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 177/388 (45%), Gaps = 22/388 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G   N  T N M++ L +  + + +   L +M +KG+ + + T+   +NA+       
Sbjct: 178 RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLG 237

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +A  +   M+    K  + T N ++  L +      A+ +F++ L    +P+ TTY  LL
Sbjct: 238 EAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL 297

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR  N +EA  ++++M+ +G  PD+++ + ++    + G    A+  F  MK  G  
Sbjct: 298 VESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLV 357

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+   YTI+I  +C+                     +   Y  ++ G   ++ +     L
Sbjct: 358 PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANAL 417

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM ERG  PD  T+  LI     +    +A+ ++  M +   KP I TYN+++  + +
Sbjct: 418 FDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           T   E   ++W+EMI R   P+  SY +L+ G  +     EA++  +EM+ KG+K  ++ 
Sbjct: 478 TTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVT 537

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
            N       R+G     DE   KM   G
Sbjct: 538 CNTVIKGYCRSGDLSKADEFLGKMISEG 565



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 175/420 (41%), Gaps = 57/420 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   +  TYN++++   R         ++  M  KGL  ++ T+   +N        
Sbjct: 212 EQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRY 271

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------------ 343
            +A  +F  M          T N LL    R+    EA+ +F  + HR            
Sbjct: 272 VRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSL 331

Query: 344 ------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
                                     P+   YT+L+ G+CR   + EA  + ++M+++G 
Sbjct: 332 IGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGC 391

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
             DVVA+N +L GL K    +DA  LF+ M  +G  P+  ++T +I   CK+        
Sbjct: 392 ALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALS 451

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       +   Y  LI GF     M+   +L  EM  R   P+ ++Y  L+    
Sbjct: 452 LFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYC 511

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA R++ EM+R G KPT+ T N ++K Y ++G+     +   +MI  G  PD  
Sbjct: 512 NLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSI 571

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y  LI G +  +   +A+  + +M  KG++  V+ YN       R GR    + + +KM
Sbjct: 572 TYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKM 631



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A +   YN++++ L + +      ++ +EM E+G++    TF   ++         KA
Sbjct: 390 GCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++F +M +   K  + T N L++   ++ ++ K  +L  + +  +  PN  +Y +L+ G
Sbjct: 450 LSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNG 509

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C +  + EA R+W+EMI KG KP +V  N +++G  + G  S A +    M ++G  P+
Sbjct: 510 YCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPD 569

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                          +  Y  LI GF     MD  + L+ +ME +G  PD +TYN ++  
Sbjct: 570 ---------------SITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              Q    EA  I ++M+  G  P   TY  ++  Y    N +   +  DEM++RG  PD
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674

Query: 538 DN 539
           D+
Sbjct: 675 DD 676



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 15/238 (6%)

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            + +L+  + + + L E    +  +  KGF   + A N +L GL+K+G    A +++  +
Sbjct: 117 VFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEI 176

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              G   NV +  IM+   CK +               ++D V   L +ME++G   D +
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDH---------------KIDDVKPFLIDMEQKGIFADIV 221

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TYN LI     + +  EA  +   M   G KPT+ TYN ++    + G Y   + V++EM
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +  G  PD  +Y  L+      +   EA     +ML +G+   ++ ++      SR G
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNG 339



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 27/327 (8%)

Query: 299 VAIFELMNKYKFKAGVDTI--NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           V I E +       GVD +  + L+ +  +++   E    F  L+ + F  ++     LL
Sbjct: 98  VEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLL 157

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           GG  ++  +  A  V+NE+   G + +V   NIM+  L K  K  D       M+ KG  
Sbjct: 158 GGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIF 217

Query: 416 PNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDL 455
            ++ +Y  +I  +C++                        Y  +I G   + R      +
Sbjct: 218 ADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGV 277

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM   G  PD  TYN L+          EA  I+ +M+  G  P + +++ ++    +
Sbjct: 278 FNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSR 337

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G+ +     + +M   G  PD+  YT+LI G        EA +  ++MLE+G    V+ 
Sbjct: 338 NGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVA 397

Query: 576 YNKFAADLSR----AGRSYVLDELAQK 598
           YN     L +    A  + + DE+ ++
Sbjct: 398 YNTILNGLCKKKLLADANALFDEMVER 424


>gi|356573388|ref|XP_003554843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Glycine max]
          Length = 491

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 194/424 (45%), Gaps = 31/424 (7%)

Query: 208 NLSHNLVVDVLERFRHARR---PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264
             S +LV ++L R   +      A  FF ++     F  +  + N  + IL R R F+  
Sbjct: 48  TFSTSLVENILGRLFASHSNGLKALEFFNYSLVHSHFPLSPASLNMTLHILTRMRYFDKA 107

Query: 265 VSMLEEMG--EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF---KAGVDTINC 319
             +L ++      LL++++  I ++  A  +  +  +  F  M    F   + G D  N 
Sbjct: 108 WVLLRDIARTHPSLLTLKSMSIVLSKIAKFQSFEDTLDGFRRMEDEVFVGREFGTDEFNV 167

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           LL+     +  KEA+ +F KL  RF+PN  +  +LL G+    N+      ++EM+ +GF
Sbjct: 168 LLKAFCTQRQMKEARSVFAKLVPRFSPNTKSMNILLLGFKESGNVTSVELFYHEMVRRGF 227

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WK 427
            PD V  NI ++   K G   DA++L E M+ +   P + + T +I            W+
Sbjct: 228 SPDGVTFNIRIDAYCKKGCFGDALRLLEEMERRNVVPTIETITTLIHGAGLVRNKDKAWQ 287

Query: 428 FCKQ--------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
             K+        +A  Y  LIT     R ++    L+ EM E+    D +TY+ +     
Sbjct: 288 LFKEIPSRNMVADAGAYNALITALVRTRDIESASSLMDEMVEKCIELDSVTYHTMFLGFM 347

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
             +  +   ++Y++M +S F P   T  M+MK + Q    ++   +W  ++ +G CP  +
Sbjct: 348 RSRGIEGVSKLYQKMTQSNFVPKTRTVVMLMKYFCQNYRLDLSVCLWKYLVEKGYCPHAH 407

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKG---MKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +L+ GL ++    +A++  ++MLE+G     A  L   +F    S   +   LD++ 
Sbjct: 408 ALDLLVTGLCARGLVHDAFECSKQMLERGRHMSNASFLMLERFLLQASDMDKLKELDQMI 467

Query: 597 QKMR 600
           +K++
Sbjct: 468 KKLQ 471


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 173/385 (44%), Gaps = 35/385 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQ--FETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           G + N  +YN++  ILG  R+        + +EM + G   +  TF I M+ +    + +
Sbjct: 279 GISPNVVSYNNI--ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIE 336

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A +IF  M          T+  +++ L ++    E + LF+K +   F P    Y  ++
Sbjct: 337 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTII 396

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+ +  N+  A  V+ EM + G  P  V +  +++G  K      A+KL   MK KG  
Sbjct: 397 DGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLK 456

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            ++++Y  +I  FCK               RR M   ++LL E+   G  P+   YN++I
Sbjct: 457 MDIKAYGTLIDGFCK---------------RRDMKSAHELLNELRGAGLSPNRFIYNSMI 501

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
              K     +EA+ +YK+MV  G    + TY  ++    ++G       +  EM+ +G  
Sbjct: 502 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 561

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG-------- 587
           PDD ++TVLI GL ++ +   A K LE+M  K M   VL YN   A   + G        
Sbjct: 562 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 621

Query: 588 ------RSYVLDELAQKMRFSGKFE 606
                 R  V D +   +  +GKF+
Sbjct: 622 HDEMLDRGLVPDNITYDILVNGKFK 646



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 156/365 (42%), Gaps = 16/365 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N     S+M          + + ++ E+ E GL+  + T+ + ++        +KA
Sbjct: 140 GKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKA 199

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
              +  M     ++ V ++N +LE   + +  + A  +F+        N+ T+  LL   
Sbjct: 200 FEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWL 259

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + EA  +W+E+I KG  P+VV++N ++ G  +    + A K+++ M   G +PN 
Sbjct: 260 CKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNA 319

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            ++TI               L+ G+  +  ++  + +   M++    P   T   +IK +
Sbjct: 320 VTFTI---------------LMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGL 364

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                  E   ++ + V  GF PT   YN I+  + + GN  +   V+ EM   G  P  
Sbjct: 365 CKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPST 424

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT LI G    +    A K L +M  KG+K  +  Y        +        EL  +
Sbjct: 425 VTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNE 484

Query: 599 MRFSG 603
           +R +G
Sbjct: 485 LRGAG 489



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           TP++    +LL    R     EA  + N+M+  G   D    ++ML   LK G   +A +
Sbjct: 2   TPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQ 61

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG- 463
            F   KA+G   +  +Y+I +   C +  + Y                  LL+EM   G 
Sbjct: 62  HFLQAKARGVELDQEAYSIFVHLLCLKPNSGYA---------------LSLLREMRAAGW 106

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            PP+G T+ ++I     +    EA+R+  +MV  G    +     +MK Y   GN     
Sbjct: 107 IPPEG-TFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSAL 165

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            + +E+   G  P+  +Y+VLI G        +A+++  EM  KG+++ V   N
Sbjct: 166 VLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLN 219


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 152/292 (52%), Gaps = 17/292 (5%)

Query: 316 TINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+  L +S + ++A  L +  ++   +P++ T+  +L G C+ + +++A  V+   
Sbjct: 475 TYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 534

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           +++G +P+VV ++ +++GL K+ K  +A++L   M   G               C+ N  
Sbjct: 535 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG---------------CRANTV 579

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y+ ++ G     RM+    +L++M + GC PD +TYN LI     ++   EAV + +EM
Sbjct: 580 TYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM 639

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           + +GF P++ TY  +     ++G ++   ++ D M  RGC P+  +Y+ ++ GL    R 
Sbjct: 640 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 699

Query: 555 GEAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            EA  Y E+M    + AP V+ Y+     L +AGR     E  ++M  +G+ 
Sbjct: 700 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRI 751



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 179/420 (42%), Gaps = 59/420 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ TY++++  L +  + E  V +L +M + G L    T+   ++ F   +  ++A
Sbjct: 573 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 632

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V +   M +  F   V T   L   L RS    EA  + D +  R   PN  TY+ ++ G
Sbjct: 633 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692

Query: 358 WCRVKNLMEAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            C+   + EA   + +M  D+   P V+A++ +++GL K G+  +A +  E M   G  P
Sbjct: 693 LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIP 752

Query: 417 NVRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           +V +++I+I                     + CK +   Y  +I  +  +      Y LL
Sbjct: 753 DVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALL 812

Query: 457 KEMEERGCPP---------------------------------DGLTYNALIKLMKIQKM 483
           +EM+  G                                    D ++YN LI  +   + 
Sbjct: 813 EEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRR 872

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            ++A+ + + MV  G  P    Y  +M   F+ G+ E+  K+  EM  RG  PD  +YT+
Sbjct: 873 SEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTI 932

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +I GL    +   A  Y EEML K +K   + Y+       +A +   +D+  + +R SG
Sbjct: 933 MISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADK---VDDAWKLLRSSG 989



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 188/438 (42%), Gaps = 74/438 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKA 298
           GF  ++ TYN+M+  L +A + E    +L+ + E     ++ TF IA++  + A     A
Sbjct: 171 GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGA 230

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDK-----------------L 340
              F+ M +        T + L++ L ++ KL     LL DK                  
Sbjct: 231 YEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQ 290

Query: 341 KHRF------------TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
            HR              PN+  +  L+ G C+ + + EA  +++ M + G   DV+ +NI
Sbjct: 291 AHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNI 350

Query: 389 MLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIMIWKFCKQ---------------- 431
           +L+GL K+ +  +A +  E+M+  +G SPNV +++ +I   C                  
Sbjct: 351 LLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAV 410

Query: 432 -----NAAVYTCLITGF---GNRRRMDIVYDLLKEMEERG------------------CP 465
                N   Y  L+ G    G+ RR++  ++ + E E R                   C 
Sbjct: 411 EGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCR 470

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  +TYN L+  +    M  +A+ + + M+ SG  P + T+N ++    +         V
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +   + RGC P+  +Y+ LI GL    +  EA + L +M+E G +A  + Y+     L +
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 590

Query: 586 AGRSYVLDELAQKMRFSG 603
            GR      + ++MR +G
Sbjct: 591 VGRMEDAVVVLRQMRDAG 608



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 54/390 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            ++S++  L +A + E  + +L+ M    + ++  F   MN    A+   +A  +F++M 
Sbjct: 280 AFSSLLHGLCQAHRLEEAIQLLKAM--PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMK 337

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNL 364
           +    A V T N LL+ L + +   EA    + ++     +PN+ T++ L+ G C    +
Sbjct: 338 ESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRV 397

Query: 365 MEAGRVWNEMID-KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-------KAKGP-- 414
            +A  V+  M+  +G  P+   +  +LEGL K G      + FE M        +  P  
Sbjct: 398 NQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIH 457

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SP V     ++ + C+     Y  L+TG      +     LL+ M E G  PD +T+N++
Sbjct: 458 SPEV---DFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSV 514

Query: 475 IK------------------------------------LMKIQKMPDEAVRIYKEMVRSG 498
           +                                     L K+ KM DEA+++  +MV  G
Sbjct: 515 LDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKM-DEALQLLAKMVELG 573

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +    TY+ ++    + G  E    V  +M   GC PD  +Y  LI G   + R  EA 
Sbjct: 574 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 633

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             L EMLE G    V+ Y      L R+GR
Sbjct: 634 GLLREMLEAGFHPSVVTYTTLCHGLCRSGR 663



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 169/384 (44%), Gaps = 30/384 (7%)

Query: 240 GFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           G A N+ TYN+++ ++LG+ R  E   S+LE M   G    + TF + +       E + 
Sbjct: 66  GCAPNAVTYNTLVNALLGQGRAKEAF-SLLERMAANGCPPELITFGLIIKGLCKEGEIEA 124

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLG 356
           A  + + M    F   V+    LL  L       EA   F + L   FTP+  TY  ++ 
Sbjct: 125 AFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVD 184

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G  +   L  AG V   + +    P V    I ++GL K G  + A + F+ M   G SP
Sbjct: 185 GLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSP 244

Query: 417 NVRSYTIMIWKFCKQNAA-----------------VYTCLITGFGNRRRMDIVYDLLKEM 459
           N  +Y  +I   CK                      ++ L+ G     R++    LLK M
Sbjct: 245 NTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM 304

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
               C P+ + +N+L+  +   +  DEA  ++  M  SG    + TYN+++K   +    
Sbjct: 305 P---CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRI 361

Query: 520 -EMGRKVWDEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLD 575
            E  R V  E++RR  GC P+  +++ LI GL +  R  +A++  E M+  +G+      
Sbjct: 362 PEAYRHV--ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFT 419

Query: 576 YNKFAADLSRAGRSYVLDELAQKM 599
           Y      L +AG S  L++  ++M
Sbjct: 420 YAFLLEGLCKAGDSRRLEQCFEQM 443



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 15/206 (7%)

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +V +N+++ GL K G+  DA   F      G  P V +Y+ +I   C+ N     C    
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGC---- 56

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                       LL+EM  RGC P+ +TYN L+  +  Q    EA  + + M  +G  P 
Sbjct: 57  -----------KLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPE 105

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + T+ +I+K   + G  E   +V DEM+ RG  PD   +TVL+  L    R  EA+ + +
Sbjct: 106 LITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQ 165

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++L  G     + YN     L +AGR
Sbjct: 166 QVLLIGFTPDAVTYNTMVDGLYKAGR 191



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 17/241 (7%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           + TY VL+ G C+   + +A   + + I  GF+P VV ++ +++GL +  +     KL E
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            M  +G               C  NA  Y  L+     + R    + LL+ M   GCPP+
Sbjct: 61  EMAGRG---------------CAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPE 105

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +T+  +IK +  +   + A R+  EMV  GF P +  + +++ +  + G  +     + 
Sbjct: 106 LITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQ 165

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD-LSRA 586
           +++  G  PD  +Y  ++ GL    R  EA   + ++L +   +P +     A D LS+A
Sbjct: 166 QVLLIGFTPDAVTYNTMVDGLYKAGRL-EAAGMVLQLLAESFSSPTVFTFTIAVDGLSKA 224

Query: 587 G 587
           G
Sbjct: 225 G 225



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 165/414 (39%), Gaps = 91/414 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF     TY++++  L R  + +    +LEEM  +G   +  T+   +NA       K+A
Sbjct: 31  GFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEA 90

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            +                   LLE +  +  P               P L T+ +++ G 
Sbjct: 91  FS-------------------LLERMAANGCP---------------PELITFGLIIKGL 116

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   +  A RV +EM+D+GF PDV  H ++L  L ++G+  +A   F+ +   G +P+ 
Sbjct: 117 CKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDA 176

Query: 419 RSYTIMI---WKFCKQNAA-----------------VYTCLITGFGNRRRMDIVYDLLKE 458
            +Y  M+   +K  +  AA                  +T  + G      +   Y+    
Sbjct: 177 VTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDS 236

Query: 459 MEERGCPPDGLTYNALIK-LMKIQKMP-------------------------------DE 486
           M + G  P+ +TY+ALI  L K  K+                                +E
Sbjct: 237 MPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEE 296

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+++ K M      P +  +N +M    Q    +   +++D M   GC  D  +Y +L+ 
Sbjct: 297 AIQLLKAM---PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLK 353

Query: 547 GLISQDRSGEAYKYLEEMLE-KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           GL    R  EAY+++E M   +G    V+ ++     L  AGR     E+ ++M
Sbjct: 354 GLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 142/319 (44%), Gaps = 20/319 (6%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
            T++ +++ L  A + +T + +   M E+G  + +  +   +NA+    E   A A+ E M
Sbjct: 756  TFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEM 815

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
              +       T   +++ L  +    EA   F  +       ++ Y  L+      +   
Sbjct: 816  KTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEIS-YNTLITSLVASRRSE 874

Query: 366  EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            +A  +   M+  G  PD   +  +++GL K G    A KL + M+++G SP++R+YTIMI
Sbjct: 875  QALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMI 934

Query: 426  WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                           +G    +++ +  D  +EM  +   PD + Y++LI         D
Sbjct: 935  ---------------SGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVD 979

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +A   +K +  SG +PTI  Y+ ++ S  +    +   +V  EM  + C P  + +T L 
Sbjct: 980  DA---WKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLA 1036

Query: 546  GGLISQDRSGEAYKYLEEM 564
               +++ R  EA K + ++
Sbjct: 1037 TAYVAEGRVDEAVKLVNDL 1055


>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Cucumis sativus]
 gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Cucumis sativus]
          Length = 1037

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 188/407 (46%), Gaps = 20/407 (4%)

Query: 198  MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
            ++  L+ C +  S  LV+++L +       AF FF W G +PG+ H + TYN  + I G 
Sbjct: 636  IKKALENCSVEFSPELVIEILRKCSLDGCAAFNFFAWVGKQPGYNHTTETYNMAIKIAGL 695

Query: 258  ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
             + F+ M S+  EM  +G  ++  T+ I +  +A A   + A+  +E M +   K   +T
Sbjct: 696  GKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGLTEIALKSYEEMKEINIKPNANT 755

Query: 317  INCLLENLGRSKLPK--EAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
               L+ +L  SK  K  EA  LF ++ H ++ P+       LG  C++  L +A +  + 
Sbjct: 756  YKYLIMSLCESKRRKVDEAITLFQEMIHSKYIPDKELLETYLGCLCKLSRLSDAKKCIDH 815

Query: 374  MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
            +   GF   +  +++ +  L +  K  +A+ L E +     S              K ++
Sbjct: 816  LRKVGFSIPL-TYSLYIRALCRARKLDEALTLLEEVVGDERS--------------KLDS 860

Query: 434  AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             +Y  L+ G     R +     +  M++ G  P    Y + I     +K    A+ I  +
Sbjct: 861  YIYGSLVYGLLQTGRTEEALAKMNSMKQVGINPTVHVYTSFIVYSFKEKQTRRALEILAK 920

Query: 494  MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
            M++ G +P+I TY+ I+  Y   G      KV++ M + G  PD  +YT+LI  L    R
Sbjct: 921  MLQEGCEPSIATYSAIVHGYMNMGKVCEAWKVFNYMKKYGPSPDFKAYTMLISCLCKAGR 980

Query: 554  SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL-DELAQKM 599
            S EA + + +ML  G+    +++      L+R G+  +  D L QK+
Sbjct: 981  SEEALEIISDMLNNGIAPSSINFRTVIFGLNREGKHVLARDVLQQKL 1027



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 177/420 (42%), Gaps = 33/420 (7%)

Query: 158 CDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDR------NMEAVLDECGINLSH 211
           C     E+E T +      D      V  V+ E+ ++ R      +ME  L    +  S 
Sbjct: 106 CKNAEQETEGTQLVVLEEND------VSSVVHEITAVIRGGNGLVSMEERLGNLDVMFSS 159

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
            +V  VL+R       A  FF W   + GF   +  +N+++SI G AR F+ +  +LEEM
Sbjct: 160 EIVEKVLKRCFKFPHLALGFFNWVKSRDGFQCTTNVFNTVLSIAGEARDFKLIDKLLEEM 219

Query: 272 GEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA-GV--DTINCLLENLGRS 327
               LL  ++T+ I ++ +  AK   K++ ++  M +   +  GV   T+ C L   G+ 
Sbjct: 220 ESYSLLKDIKTWTILISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSLSAAGKP 279

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           +L  E      K K     ++    +LL       +      +  +M+      +   ++
Sbjct: 280 ELAMEFYQEMAK-KGISVVDMKMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQERDVYH 338

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            +L+      +  +A++    + +KG   +   + I+I   C+ N               
Sbjct: 339 YILKSFCISRRIKEALEFIRDLNSKGIVLDSEYFEILIGGLCRAN--------------- 383

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R++   +L+  ++ +G   DG  Y  +I     +    +A+ +++ M   G+ PT  TY 
Sbjct: 384 RIEDALELINIIKRKG-DVDGKIYGIIINWYLRKNEVSKALDLFQNMKEMGYFPTTSTYT 442

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +M+  F    YE G +++ EM+ +G   D  +   ++ G + Q+R  EA+     M  K
Sbjct: 443 QLMQHLFSLAEYEKGFELYKEMLEKGIELDTVAIMTVVVGNVRQNRITEAWNVFRTMENK 502



 Score = 39.3 bits (90), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 456 LKEMEERGCPPDGLTYNALIK--LMKIQKMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKS 512
           L  MEER    D +  + +++  L +  K P  A+  +  +  R GF+ T + +N ++  
Sbjct: 143 LVSMEERLGNLDVMFSSEIVEKVLKRCFKFPHLALGFFNWVKSRDGFQCTTNVFNTVLSI 202

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             +  ++++  K+ +EM       D  ++T+LI    +   +G++     +M E G +  
Sbjct: 203 AGEARDFKLIDKLLEEMESYSLLKDIKTWTILISLYGNAKLTGKSLMVYSKMKESGCEPD 262

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            + Y      LS AG+  +  E  Q+M   G
Sbjct: 263 GVVYKTLICSLSAAGKPELAMEFYQEMAKKG 293


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 162/351 (46%), Gaps = 22/351 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ + + + + T++S+  +M   G+   + T  I +N+F   +    A ++   + 
Sbjct: 153 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 212

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +    T N L+  L       EA  LFDK +   F P++ TY  L+ G C+V N  
Sbjct: 213 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 272

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M+ K  +P+V+A+N +++ L K  + ++A  LF  M  KG SP++ +Y  +I
Sbjct: 273 AAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 332

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      N  V++ ++        + I +D++  M +RG  
Sbjct: 333 HALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 392

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY AL+    ++   DEAV+++  MV  G  P + +YN+++  Y Q    +    +
Sbjct: 393 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 452

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            ++M  +G   D  +Y  LI GL    R   A     EM+  G    ++ Y
Sbjct: 453 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTY 503



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 184/402 (45%), Gaps = 27/402 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++D L + R     AF  F     K G + +  TYNS++  L    +++ + ++L
Sbjct: 291 IAYNTIIDSLCKDRQVTE-AFNLFSEMITK-GISPDIFTYNSLIHALCNLCEWKHVTTLL 348

Query: 269 EEM-GEKGLLSMETFKIAMNAFAAAKERKKAVA--IFELMNKYKFKAGVDTINCLLENLG 325
            EM   K + ++  F   ++A    KE   A+A  + ++M K   +  V T   L++   
Sbjct: 349 NEMVNSKIMPNVVVFSTVVDALC--KEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC 406

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                 EA  +FD + H+   PN+ +Y +L+ G+C+++ + +A  +  +M  +G   D V
Sbjct: 407 LRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTV 466

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +N ++ GL  +G+   AI LF  M A G  P++ +Y I++   CK +      +     
Sbjct: 467 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMV----- 521

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                     LLK +E      D L YN  I  M      + A  ++  +   G +P + 
Sbjct: 522 ----------LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVR 571

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN+++    + G  +   K++ +M   GC  D   Y  +I G +  + +  A + L+EM
Sbjct: 572 TYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEM 631

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFE 606
           L +G  A V         LS  G    LD+  +++R  G  E
Sbjct: 632 LAEGFSADVSTTTLIVEMLSDDG----LDQSFERLRLRGVGE 669



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TY ++M+ L +       + +L  M +K    ++  +   +++    ++  +A
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F  M        + T N L+  L    +      LL + +  +  PN+  ++ ++  
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 369

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  V + MI +G +PDVV +  +++G     +  +A+K+F+ M  KG  PN
Sbjct: 370 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 429

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           VRSY I+I  +C+                     +   Y  LI G  +  R+     L  
Sbjct: 430 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 489

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM   G  PD +TY  L+  +       EA+ + K +  S     I  YN+ +    + G
Sbjct: 490 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAG 549

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E  R ++  +  +G  PD  +Y ++I GL  +    EA K   +M E G       YN
Sbjct: 550 ELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYN 609

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  R+  ++   +L Q+M   G
Sbjct: 610 TIIRGFLRSNETFGATQLLQEMLAEG 635



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 15/209 (7%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           +N M+     P  V    +L  + K+   S  + L   M + G  P+V +  I+I  FC 
Sbjct: 138 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC- 196

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                         + RR+   + +L ++ + GC PD  T+N LI+ + ++    EA+ +
Sbjct: 197 --------------HLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHL 242

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + + +  GF+P + TY  +M    + GN     ++   M+++ C P+  +Y  +I  L  
Sbjct: 243 FDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK 302

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             +  EA+    EM+ KG+   +  YN  
Sbjct: 303 DRQVTEAFNLFSEMITKGISPDIFTYNSL 331



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 134/360 (37%), Gaps = 91/360 (25%)

Query: 337 FDKLKHRFTPNLTT-YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM------ 389
           F+++ H   P  T  +T LL    ++K+      +  +M   G  PDV   NI+      
Sbjct: 138 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCH 197

Query: 390 ----------LEGLLKIGKRSD-------------------AIKLFEVMKAKGPSPNVRS 420
                     L  LLK+G + D                   A+ LF+    +G  P+V +
Sbjct: 198 LRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVT 257

Query: 421 YTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y                      M+ K C+ N   Y  +I      R++   ++L  EM 
Sbjct: 258 YGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI 317

Query: 461 ERGCPPDGLTYNALI-----------------KLMKIQKMPDEAV--------------- 488
            +G  PD  TYN+LI                 +++  + MP+  V               
Sbjct: 318 TKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIA 377

Query: 489 ---RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
               +   M++ G +P + TY  +M  +      +   KV+D M+ +GC P+  SY +LI
Sbjct: 378 IAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 437

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            G     R  +A   LE+M  +G+ A  + YN     L   GR      L  +M  SG+ 
Sbjct: 438 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 497


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 28/384 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMN 287
           F+     G  P F     TY+S++  L +AR  +   + L +M  KG+L    T+   + 
Sbjct: 242 FKEMVQRGIPPDFV----TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIY 297

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TP 346
            +++  + K+AV +F+ M ++     V T++ L+ +L +    KEA+ +FD +  +   P
Sbjct: 298 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 357

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ +YT++L G+     L++   +++ M+  G  PD+   N++++     G    A+ +F
Sbjct: 358 NVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIF 417

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK----------------QNAA----VYTCLITGFGNR 446
             M+  G  P+V +Y  +I   C+                Q  A     Y CLI GF   
Sbjct: 418 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTH 477

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             +    +L+ E+   G   D + ++++I  L K+ ++ D A  I+   V  G  PT   
Sbjct: 478 GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMD-AQNIFDLTVNVGLHPTAVV 536

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y+M+M  Y   G  E   +V+D M+  G  P+D  Y  L+ G     R  E      EML
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 566 EKGMKAPVLDYNKFAADLSRAGRS 589
           +KG+K   + YN     L  AGR+
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRT 620



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 157/334 (47%), Gaps = 16/334 (4%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G++ Q + ++ M+ E G      +  +   ++ F    +  KA  +F+ M +        
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + ++  L +++   +A+    ++ ++   PN  TY  L+ G+       EA RV+ EM
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
                 PDVV  ++++  L K GK  +A  +F+ M  KG +PNV SYTIM+  +     A
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGY-----A 370

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              CL+           + DL   M   G  PD  T+N LIK      M D+A+ I+ EM
Sbjct: 371 TKGCLVD----------MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G KP + TY  ++ +  + G  +   + +++MI +G  PD  +Y  LI G  +    
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A + + E++  GM   ++ ++    +L + GR
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 121/266 (45%), Gaps = 19/266 (7%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW-NE 373
           T   L++   R+  P+ A   F +L +     N+     LL G+C  K   EA  +  + 
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHR 172

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--SPNVRSYTIMIWKFCKQ 431
             + G  PDV +++I+L+ L   GK   A  L  +M   G   SP+V +Y+ +I  F K+
Sbjct: 173 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKE 232

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
                 C               DL KEM +RG PPD +TY++++  +   +  D+A    
Sbjct: 233 GDVNKAC---------------DLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           ++MV  G  P   TYN ++  Y  TG ++   +V+ EM R    PD  + ++L+G L   
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +  EA    + M  KG    V  Y 
Sbjct: 338 GKIKEARDVFDTMAMKGQNPNVFSYT 363



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 143/332 (43%), Gaps = 19/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TY ++++ L R  + +  +    +M ++G+   +  +   +  F       KA
Sbjct: 424 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA 483

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLG 356
             +  E+MN       +   + ++ NL +     +AQ +FD  +     P    Y++L+ 
Sbjct: 484 KELISEIMNN-GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C V  + +A RV++ M+  G +P+ V +  ++ G  KIG+  + + LF  M  KG  P
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +   Y I               +I G     R         EM E G   +  TYN +++
Sbjct: 603 STILYNI---------------IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLR 647

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +   +  DEA+ ++KE+     K  I T N ++   FQT   E  + ++  + R G  P
Sbjct: 648 GLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 707

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
              +Y+++I  LI +    EA      M   G
Sbjct: 708 CVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 15/222 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN   Y  L+ G+C++  + E   ++ EM+ KG KP  + +NI+++GL + G+   A   
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 626

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G + N  +Y I               ++ G    R  D    L KE+      
Sbjct: 627 FHEMTESGIAMNKCTYNI---------------VLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            + +T N +I  M   +  +EA  ++  + RSG  P + TY++++ +  + G  E    +
Sbjct: 672 INIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDM 731

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +  M   GC PD      ++  L+ ++    A  YL ++ E+
Sbjct: 732 FSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDER 773



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 128/299 (42%), Gaps = 28/299 (9%)

Query: 330 PKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           P  A  LF++   R       +P   TY +L+    R      A   + +++  G + ++
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 146

Query: 384 VAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  N +L+G  +  +  +A+  L       G  P+V SY+I++   C Q           
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ----------- 195

Query: 443 FGNRRRMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   + D   DLL+ M E G  C PD + Y+ +I     +   ++A  ++KEMV+ G  
Sbjct: 196 -GKSGQAD---DLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIP 251

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TY+ ++ +  +    +       +M+ +G  P++ +Y  LI G  S  +  EA + 
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRV 311

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRFSGKFEVSNVLARWA 615
            +EM    +   V+  +     L + G+      V D +A K +    F  + +L  +A
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYA 370


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 189/454 (41%), Gaps = 76/454 (16%)

Query: 217 VLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           +L   R    P  A R    A  +  FA +S  Y  ++  LG A  F+ M  ++ EM  +
Sbjct: 59  LLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRRE 118

Query: 275 G------------------------------LLSMETFKIA---------MNAFAAAKER 295
           G                               L  +TF +          +N      + 
Sbjct: 119 GHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKL 178

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
           K   +++  M     +  V T+N L++ L R+   + A L+ +++  H   P+ TT+T L
Sbjct: 179 KLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTL 238

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+    ++  A RV  +M++ G  P  V  N+++ G  K+G+  DA+   +   A G 
Sbjct: 239 MQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGF 298

Query: 415 SPNVRSYTIMIWKFCKQNAAV---------------------YTCLITGFGNRRRMDIVY 453
            P+  +Y   +   C QN  V                     Y  +I        +D   
Sbjct: 299 EPDQVTYNTFVHGLC-QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            ++ +M +RGC PD  T+N LI  +  Q   +EA+ + +E+   G  P ++T+N+++ + 
Sbjct: 358 GIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 417

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G+  +G ++++EM   GC PD+ +Y +LI  L S  + G A   L EM   G     
Sbjct: 418 CKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRST 477

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
           + YN             ++D L +KMR     EV
Sbjct: 478 VTYNT------------IIDALCKKMRIEEAEEV 499



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A+ + +LM +      V T N ++  L ++    EA+ + +++  R   P+ TT+  L+ 
Sbjct: 321 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 380

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
                  L EA  +  E+  KG  PDV   NI++  L K+G     I+LFE MK+ G +P
Sbjct: 381 ALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTP 440

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  +Y I+I   C              GN        DLL EME  GCP   +TYN +I 
Sbjct: 441 DEVTYNILIDHLCSMGK---------LGN------ALDLLNEMESNGCPRSTVTYNTIID 485

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  +   +EA  ++ +M   G   +  T+N ++    +    +   ++ ++M++ G  P
Sbjct: 486 ALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQP 545

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           ++ +Y  ++     Q    +A   LE M   G +  V+ Y      L +AGR+ V  +L 
Sbjct: 546 NNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLL 605

Query: 597 QKMRFSG 603
           + MR  G
Sbjct: 606 RGMRIKG 612



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 24/354 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ T+N+++  L    + E  + +  E+  KGL   + TF I +NA     +    
Sbjct: 367 GCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 426

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT-TYTVLLGG 357
           + +FE M          T N L+++L        A  L ++++    P  T TY  ++  
Sbjct: 427 IRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDA 486

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA  V+++M  +G     V  N +++GL K  +  DA +L E M  +G  PN
Sbjct: 487 LCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPN 546

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  ++  +CKQ            GN ++     D+L+ M   G   D +TY  LI  
Sbjct: 547 NITYNSILTHYCKQ------------GNIKK---AADILETMTANGFEIDVVTYGTLING 591

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +        A+++ + M   G +PT   YN +++S F+  N      ++ EM   G  PD
Sbjct: 592 LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPD 651

Query: 538 DNSYTVLIGGLISQDRSG----EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +Y ++   L    R G    EA+ +L EM+ KG       +   A  L   G
Sbjct: 652 ALTYKIVFRSLC---RGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 159/373 (42%), Gaps = 28/373 (7%)

Query: 240 GFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           GF  +  TYN+ +  L +    +   + M  ML+E  +  +    T+   +N  +   E 
Sbjct: 297 GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVF---TYNTVINCLSKNGEL 353

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A  I   M          T N L+  L      +EA  L  +L  +  +P++ T+ +L
Sbjct: 354 DEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNIL 413

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+V +     R++ EM   G  PD V +NI+++ L  +GK  +A+ L   M++ G 
Sbjct: 414 INALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGC 473

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
             +  +Y  +I   CK+                    +A  +  LI G    +R+D   +
Sbjct: 474 PRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATE 533

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L+++M + G  P+ +TYN+++     Q    +A  I + M  +GF+  + TY  ++    
Sbjct: 534 LIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLC 593

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  ++  K+   M  +G  P   +Y  +I  L  ++   +A     EM E G     L
Sbjct: 594 KAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDAL 653

Query: 575 DYNKFAADLSRAG 587
            Y      L R G
Sbjct: 654 TYKIVFRSLCRGG 666



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 90/239 (37%), Gaps = 49/239 (20%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           D  G + ++ T+N+++  L +A++ +    ++E+M ++GL     T+   +  +      
Sbjct: 504 DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA  I E M    F+  V                                   TY  L+
Sbjct: 564 KKAADILETMTANGFEIDV----------------------------------VTYGTLI 589

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+      A ++   M  KG +P   A+N +++ L +     DA+ LF  M   G  
Sbjct: 590 NGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEP 649

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           P+  +Y I+    C+    +                 +D L EM  +G  P+  ++  L
Sbjct: 650 PDALTYKIVFRSLCRGGGPIKEA--------------FDFLVEMVNKGFMPEFSSFRML 694



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 3/179 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   N+ TYNS+++   +    +    +LE M   G  + + T+   +N    A   +
Sbjct: 540 KEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQ 599

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLL 355
            A+ +   M     +      N ++++L R    ++A  LF ++      P+  TY ++ 
Sbjct: 600 VALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVF 659

Query: 356 GGWCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
              CR    + EA     EM++KGF P+  +  ++ EGLL +G     I   E++  K 
Sbjct: 660 RSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEKA 718


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 169/370 (45%), Gaps = 17/370 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKER 295
           +K     N   Y++++  L +       + +  ++GE+G LL   T+   ++   +    
Sbjct: 187 EKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRW 246

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVL 354
           ++   +   M +        T N L++ L +     EAQ +   +  R   P++ TY  L
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C  +N+ EA  ++N M+ +G +PDV+ +N++++G  K     +A+ LF+ +  K  
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P + SY                 LI G  N  R+  V  LL EM     PPD +TYN L
Sbjct: 367 VPTIASYN---------------SLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +  +    EA+ +   M++ G KP I TYN +M  Y    N  + + +++ M++ G 
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL 471

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  +Y VLI G    +   EA    +EM  K +   +  YN     L   GR   + E
Sbjct: 472 EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQE 531

Query: 595 LAQKMRFSGK 604
           L  +M  SG+
Sbjct: 532 LLDEMCDSGQ 541



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 17/340 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ TYNS++       +++ +  +L +M  + +   + TF I ++A        +A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +  +M+K   K  + T N L+E     +   EA+ LF+++  R   P++  Y VL+ G
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K + EA  ++ E+ +K   P + ++N +++GL   G+ S   KL + M      P+
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y I+I   CK+                R+     +L  M ++G  P+ +TYNA++  
Sbjct: 405 VVTYNILIDALCKEG---------------RILEALGVLVMMMKKGVKPNIVTYNAMMDG 449

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
             ++   + A  I+  MV+SG +P I  YN+++  Y +T   +    ++ EM  +   PD
Sbjct: 450 YCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPD 509

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             SY  LI GL +  R     + L+EM + G    V+ YN
Sbjct: 510 IASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYN 549



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 163/377 (43%), Gaps = 62/377 (16%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N ++  L   GR  + + +++M+ + GEK    + T+   M  + + +   +A  +F 
Sbjct: 267 TFNILIDALCKEGRILEAQGVLAMMSKRGEKP--DIVTYNALMEGYCSRENVHEARELFN 324

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
            M K   +  V   N L++   ++K+  EA +LF +L ++   P + +Y  L+ G C   
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSG 384

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            +    ++ +EM      PDVV +NI+++ L K G+  +A+ +  +M  KG  PN+ +Y 
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYN 444

Query: 423 IMIWKFC-KQNAAV-------------------YTCLITGFGNRRRMDIVYDLLKEMEER 462
            M+  +C + N  V                   Y  LI G+     +D    L KEM  +
Sbjct: 445 AMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK 504

Query: 463 GCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE- 520
              PD  +YN+LI  L  + ++P     +  EM  SG  P + TYN+++ ++ +T  ++ 
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIP-HVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563

Query: 521 ---------------------------------MGRKVWDEMIRRGCCPDDNSYTVLIGG 547
                                            M       ++  GC P+  +YT+LI  
Sbjct: 564 AISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINA 623

Query: 548 LISQDRSGEAYKYLEEM 564
           L      GEA   L +M
Sbjct: 624 LCKDGSFGEAMLLLSKM 640



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 27/281 (9%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT-YTVLLGGWCRVKNLMEAGRVWNEMID 376
           NC   N+       +A   F+++   F P  T+ +  LLG   R+ +   A  ++ ++  
Sbjct: 30  NCRFRNV------DDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQS 83

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----- 431
           KG  P +    I++         + A  L   +   G  PN+ ++  +I  FC       
Sbjct: 84  KGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFK 143

Query: 432 ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                          +   Y  LI G     ++     LL+EME+    P+ + Y+ALI 
Sbjct: 144 ALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +       +A+ +  ++   G      TYN ++      G ++   ++  +M+R    P
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           DD ++ +LI  L  + R  EA   L  M ++G K  ++ YN
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYN 304



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 15/241 (6%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR +N+ +A   +N M+     P     + +L  ++++G    AI LF  +++KG SP++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            ++TI+I  +  Q+   +                + LL  + + G  P+ +T+N +I   
Sbjct: 91  ATFTILINCYFHQSHTAFA---------------FSLLATILKSGYQPNLVTFNTIINGF 135

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            I  M  +A+   + ++  G+     TY  ++    + G  +    +  EM +    P+ 
Sbjct: 136 CINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNL 195

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
             Y+ LI GL       +A     ++ E+G+    + YN         GR   + +L  K
Sbjct: 196 VMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTK 255

Query: 599 M 599
           M
Sbjct: 256 M 256



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +YNS++  L    +   +  +L+EM + G    + T+ I ++AF   +   KA+++F  +
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----TPNLTTYTVLLGGWCRV 361
            +        T + +++NL + +  K A+   D LKH      +PN+ TYT+L+   C+ 
Sbjct: 572 VE-GIWPDFYTNHAIVDNLCKGEKLKMAE---DALKHLLMHGCSPNVQTYTILINALCKD 627

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            +  EA  + ++M D    PD +   I++  LL+  +   A KL E M A+G
Sbjct: 628 GSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 1/136 (0%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  +    L  ++++   P  A+ ++ ++   G  P+I T+ +++  YF   +      
Sbjct: 53  PPTSVFDKLLGAIVRMGHYP-TAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFS 111

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +   +++ G  P+  ++  +I G        +A  + + +L +G       Y      LS
Sbjct: 112 LLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLS 171

Query: 585 RAGRSYVLDELAQKMR 600
           + G+      L Q+M 
Sbjct: 172 KNGQIKAALHLLQEME 187


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 204/445 (45%), Gaps = 25/445 (5%)

Query: 163 SESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           SE  I +++ + T   R + ER  +++ ++F    + E  L+   + + H LV +V+ + 
Sbjct: 9   SEEAIATIAPRYTHSVRVLDERFIRIL-KIFKWGPDAEKALEVLMLRVDHWLVREVM-KT 66

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
                   +FF WA  +  + H++ TY +++  L    Q+  M  M++EM    +  +  
Sbjct: 67  DVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTP 126

Query: 282 FKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +++  +     AK  ++A+ IF  +   K +      N ++  L      ++   L+++
Sbjct: 127 TELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNE 186

Query: 340 LK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           +    H F P+  TY+ L+  +C++     A ++ NEM + G +P    + +++    K 
Sbjct: 187 MSTEGHCF-PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKF 245

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
                A+ LFE M+                ++C+ +   YT LI G G   R+D  Y   
Sbjct: 246 NDAHGALSLFEEMRH---------------QYCRPDVFTYTELIRGLGKAGRIDEAYHFF 290

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM+  GC PD +  N +I  +      D+A+++++EM      P++ TYN I+K+ F++
Sbjct: 291 CEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFES 350

Query: 517 GNYEMGRKVWDE-MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            +       W E M   G  P   +Y++LI G    +R  +A   LEEM EKG       
Sbjct: 351 KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAA 410

Query: 576 YNKFAADLSRAGRSYVLDELAQKMR 600
           Y      L +A R  +  EL Q+++
Sbjct: 411 YCSLIDALGKAKRYDLACELFQELK 435



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 59/418 (14%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIF 302
           ++ YNSM+ +L    Q+E +  +  EM  +G       T+   ++AF     R  A+ + 
Sbjct: 161 AQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 220

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRV 361
             M +   +        L+    +      A  LF++++H++  P++ TYT L+ G  + 
Sbjct: 221 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 280

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF--------------- 406
             + EA   + EM  +G +PD V  N M+  L K G+  DA+KLF               
Sbjct: 281 GRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTY 340

Query: 407 ---------------------EVMKAKGPSPNVRSYTIMIWKFCKQN------------- 432
                                E MK  G SP+  +Y+I+I  FCK N             
Sbjct: 341 NTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD 400

Query: 433 -------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                   A Y  LI   G  +R D+  +L +E++E         Y  +IK +      D
Sbjct: 401 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLD 460

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A+ ++ EM + G  P ++ YN +M    +TG  +        M   GC PD NSY +++
Sbjct: 461 DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 520

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL        A + L  M +  ++  V+ YN     LS AG      +L ++M   G
Sbjct: 521 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 578



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 18/347 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
           TY  ++  LG+A + +       EM  +G      F   M N    A     A+ +F+ M
Sbjct: 269 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM 328

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
              +    V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+   
Sbjct: 329 ETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 388

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y +
Sbjct: 389 MEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 448

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI                  G   R+D   ++  EM + GC PD   YNAL+  +    M
Sbjct: 449 MI---------------KHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 493

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+   + M   G  P I++YN+I+    +TG      ++   M +    PD  SY  
Sbjct: 494 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 553

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
           ++G L       EA K ++EM   G +  ++ Y+     + +    Y
Sbjct: 554 VLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDHEY 600



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 400 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 459

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             A+ +F+ MNK      V   N L+  L R+ +  EA     +++ H   P++ +Y ++
Sbjct: 460 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 519

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G  +      A  + + M     +PDVV++N +L  L   G   +A KL + M   G 
Sbjct: 520 LNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF 579

Query: 415 SPNVRSYT 422
             ++ +Y+
Sbjct: 580 EYDLITYS 587


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 171/366 (46%), Gaps = 17/366 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
            G  HN  TY+ +++   R  Q    +++L +M + G   ++ T    +N +  +K   +A
Sbjct: 725  GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 784

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            VA+ + M    ++    T N L+  L       EA  L D++  +   P+L TY V++ G
Sbjct: 785  VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 844

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             C+  +   A  + N+M     +P V+ +N +++GL K     DA+ LF+ M+ KG  PN
Sbjct: 845  LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            V +Y+ +I   C               N  R      LL +M ER   PD  T++ALI  
Sbjct: 905  VVTYSSLISCLC---------------NYGRWSDASRLLSDMIERKINPDVFTFSALIDA 949

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               +    EA ++Y EMV+    P+I TY+ ++  +      +  +++++ M+ + C PD
Sbjct: 950  FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009

Query: 538  DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
              +Y  LI G     R  E  +   EM ++G+    + YN     L +AG   +  E+ +
Sbjct: 1010 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 1069

Query: 598  KMRFSG 603
            +M   G
Sbjct: 1070 EMVSDG 1075



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 171/351 (48%), Gaps = 17/351 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            G+  N+ T+N+++  L    +    +++++ M  KG    + T+ + +N      +   A
Sbjct: 795  GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              +   M + K + GV   N +++ L + K   +A  LF +++ +   PN+ TY+ L+  
Sbjct: 855  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             C      +A R+ ++MI++   PDV   + +++  +K GK  +A KL++ M  +   P+
Sbjct: 915  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 974

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            + +Y+ +I  FC  +               R+D    + + M  + C PD +TYN LIK 
Sbjct: 975  IVTYSSLINGFCMHD---------------RLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 1019

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                K  +E + +++EM + G      TYN++++  FQ G+ +M ++++ EM+  G  P+
Sbjct: 1020 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 1079

Query: 538  DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              +Y  L+ GL    +  +A    E +    M+  +  YN     + +AG+
Sbjct: 1080 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + + ++++ ++S+ ++M   G+ + + TF I +N F    +   A++I   M 
Sbjct: 191 FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 250

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    TI  L+    R     +A  L DK+    + P++  Y  ++   C+ K + 
Sbjct: 251 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 310

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A   + E+  KG +P+VV +  ++ GL    + SDA +L   M  K  +PNV +Y+ ++
Sbjct: 311 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 370

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K                     +   Y+ LI G     R+D    +   M  +GC 
Sbjct: 371 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 430

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D ++YN LI      K  ++ +++++EM + G      TYN +++ +FQ G+ +  ++ 
Sbjct: 431 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 490

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M   G  PD  +Y +L+GGL       +A    E+M ++ M   ++ Y      + +
Sbjct: 491 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 550

Query: 586 AGR 588
            G+
Sbjct: 551 TGK 553



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 178/386 (46%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  ++  T+N +++      Q    +S+L +M + G      T    +N F        A
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V++ + M +  +K  +   N ++++L ++K   +A   F +++ +   PN+ TYT L+ G
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 337

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI K   P+V+ ++ +L+  +K GK  +A +LFE M      P+
Sbjct: 338 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 397

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+                    +M+ K C  +   Y  LI GF   +R++    L +
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TYN LI+        D+A   + +M   G  P I TYN+++      G
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    ++++M +R    D  +YT +I G+    +  EA+     +  KG+K  ++ Y 
Sbjct: 518 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYT 577

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              + L   G  + ++ L  KM+  G
Sbjct: 578 TMMSGLCTKGLLHEVEALYTKMKQEG 603



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 162/354 (45%), Gaps = 22/354 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G+  +  T  S+++   R  +    VS++++M E G    +  +   +++    K   
Sbjct: 251 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 310

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A   F+ + +   +  V T   L+  L   S+    A+LL D +K + TPN+ TY+ LL
Sbjct: 311 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 370

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   ++EA  ++ EM+     PD+V ++ ++ GL    +  +A ++F++M +KG  
Sbjct: 371 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 430

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
            +V SY  +I  FCK                     N   Y  LI GF     +D   + 
Sbjct: 431 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 490

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M+  G  PD  TYN L+  +      ++A+ I+++M +      I TY  +++   +
Sbjct: 491 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 550

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           TG  E    ++  +  +G  PD  +YT ++ GL ++    E      +M ++G+
Sbjct: 551 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 604



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 171/369 (46%), Gaps = 29/369 (7%)

Query: 189  DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
            D  F+L   ME    E G+ L +N ++D L +++H    A   F     K G   N  TY
Sbjct: 852  DLAFNLLNKMEQGKLEPGV-LIYNTIIDGLCKYKHMD-DALNLFKEMETK-GIRPNVVTY 908

Query: 249  NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
            +S++S L    ++     +L +M E+ +   + TF   ++AF    +  +A  +++ M K
Sbjct: 909  SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968

Query: 308  YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLM 365
                  + T + L+          EA+ +F+ +  KH F P++ TY  L+ G+C+ K + 
Sbjct: 969  RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVE 1027

Query: 366  EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            E   V+ EM  +G   + V +NI+++GL + G    A ++F+ M + G  PN+ +Y  ++
Sbjct: 1028 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 1087

Query: 426  WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
               CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 1088 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 1147

Query: 466  PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            PD + YN +I     +   +EA  ++KEM   G  P    YN ++++  + G+ E   ++
Sbjct: 1148 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 1207

Query: 526  WDEMIRRGC 534
              EM  R C
Sbjct: 1208 IKEM--RSC 1214



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/421 (20%), Positives = 164/421 (38%), Gaps = 70/421 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYN+++    +A   +       +M   G+   + T+ I +       E +KA
Sbjct: 463 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 522

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + IFE M K +    + T   ++  + ++   +EA  LF  L  +   P++ TYT ++ G
Sbjct: 523 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 582

Query: 358 WCRVKNLMEAGRVWNEMIDKGF--------KPDVVAHNIMLEGLLKIG------------ 397
            C    L E   ++ +M  +G           D+     +++ +L  G            
Sbjct: 583 LCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSG 642

Query: 398 --------------------------------KRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
                                           K  DA+ LF  M    P P++  ++ ++
Sbjct: 643 VCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLL 702

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
               K N               + D+V  L ++M+  G P +  TY+ LI     +    
Sbjct: 703 SAIAKMN---------------KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLP 747

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            A+ +  +M++ G++P I T + ++  Y  +        + D+M   G  P+  ++  LI
Sbjct: 748 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 807

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            GL   +++ EA   ++ M+ KG +  ++ Y      L + G + +   L  KM   GK 
Sbjct: 808 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME-QGKL 866

Query: 606 E 606
           E
Sbjct: 867 E 867



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 154/339 (45%), Gaps = 18/339 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           +YN++++   +A++ E  + +  EM ++GL+S   T+   +  F  A +  KA   F  M
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 494

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           + +     + T N LL  L  +   ++A ++F+ ++ R    ++ TYT ++ G C+   +
Sbjct: 495 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 554

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  ++  +  KG KPD+V +  M+ GL   G   +   L+  MK +G   N    T+ 
Sbjct: 555 EEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN--DCTLS 612

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDI-------VYDLLKEMEERGCPP--DGLTYNALI 475
                     +   L  G+      DI          LL+    +      + L+ N L 
Sbjct: 613 DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLS 672

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           +L       D+AV ++ EMV+S   P+I  ++ ++ +  +   +++   + ++M   G  
Sbjct: 673 EL-----KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 727

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
            +  +Y++LI     + +   A   L +M++ G +  ++
Sbjct: 728 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 766



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++++M+     P +V  N +L  ++K+ K    I L + M+  G   ++ ++ I
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC        C         ++ +   +L +M + G  PD +T  +L+     +  
Sbjct: 229 VINCFC-------CCF--------QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 273

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             +AV +  +MV  G+KP I  YN I+ S  +T         + E+ R+G  P+  +YT 
Sbjct: 274 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 333

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           L+ GL +  R  +A + L +M++K +   V+ Y+       + G+     EL ++M
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 389



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++ EM+     P ++  + +L  + K+ K    I L E M+  G   N  +Y+I
Sbjct: 676 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 735

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC+               R ++ +   +L +M + G  P+ +T ++L+      K 
Sbjct: 736 LINCFCR---------------RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 780

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EAV +  +M  +G++P   T+N ++   F          + D M+ +GC PD  +Y V
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 840

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ GL  +  +  A+  L +M +  ++  VL YN     L +
Sbjct: 841 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 882



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 66/141 (46%)

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +++   DL  +M +    P  + +N L+  +   K  D  + + K+M   G +  ++T+N
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  +       +   +  +M++ G  PD  +   L+ G   ++R  +A   +++M+E 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 568 GMKAPVLDYNKFAADLSRAGR 588
           G K  ++ YN     L +  R
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKR 308


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           +  F  ++  KKA+ + E++  Y     V + N ++    ++     A  +FD+++ R F
Sbjct: 104 IKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P++ TY +++G  C    L  A  V +E++  G KP V+ + I++E  +  G+ ++A++
Sbjct: 163 SPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALE 222

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           LF+ + ++G  P++ +Y  +I   CK+          G  +R       D ++ +  RGC
Sbjct: 223 LFDELVSRGLRPDLYTYNAIIRGICKE----------GMEDR-----ALDFVRHLSARGC 267

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD ++YN L++    +   ++  R+ K+MV SG +P + T+++++ S+ + G       
Sbjct: 268 NPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVN 327

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V + M  +G  PD  SY  LI     + R   A +YLE+M+  G    +++YN   A L 
Sbjct: 328 VLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLC 387

Query: 585 RAG 587
           + G
Sbjct: 388 KFG 390



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 170/369 (46%), Gaps = 21/369 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  +      ++     +R  +  + ++E +   G   + ++   ++ F+ A +   A 
Sbjct: 92  GFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIDSAN 151

Query: 300 AIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            +F+ M    F   V T N ++ +L  R KL    +++ + LK    P++ TYT+L+   
Sbjct: 152 QVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEAT 211

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
                + EA  +++E++ +G +PD+  +N ++ G+ K G    A+     + A+G +P+V
Sbjct: 212 ILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDV 271

Query: 419 RSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            SY I++  F                    C+ N   ++ LI+ F    R+    ++L+ 
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEV 331

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M+E+G  PD  +Y+ LI     +   D A+   ++MV  G  P I  YN I+ +  + G 
Sbjct: 332 MKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGC 391

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            ++   V++++   GC P   +Y  +   L S     +A + + EM+ KG+    + YN 
Sbjct: 392 ADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNS 451

Query: 579 FAADLSRAG 587
             + L R G
Sbjct: 452 LISCLCRDG 460



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 183/419 (43%), Gaps = 34/419 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +YN+M+S   +A Q ++   + + M  +G    + T+ I + +  +  + + A  + + +
Sbjct: 133 SYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDEL 192

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            K   K  V T   L+E         EA  LFD+L  R   P+L TY  ++ G C+    
Sbjct: 193 LKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGME 252

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A      +  +G  PDVV++NI+L   L   +  D  +L + M   G  PNV +++I+
Sbjct: 253 DRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSIL 312

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  FC++                    ++  Y  LI+ F    R+D+  + L++M   GC
Sbjct: 313 ISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGC 372

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD + YN ++  +      D A+ +++++   G  PT+  YN +  + +  GN     +
Sbjct: 373 LPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALE 432

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +  EMIR+G  PD+ +Y  LI  L       EA   L +M     +  V+ +N     + 
Sbjct: 433 MISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMC 492

Query: 585 RAGRSYVLDELAQKMRFSGKF--EVSNVL-------ARW---AETTKNRVYRKDRIETD 631
           +A R +   EL   M   G    E S VL       A W   A    N +YR   I  D
Sbjct: 493 KAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVISGD 551



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 153/318 (48%), Gaps = 15/318 (4%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
           +N    A +  +++   E +    FK  V     L++    S+  K+A  + + L+    
Sbjct: 69  LNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGD 128

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ +Y  ++ G+ +   +  A +V++ M  +GF PDVV +NIM+  L   GK   A ++
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + +   G  P+V +YTI+I             ++ G     R++   +L  E+  RG  
Sbjct: 189 MDELLKDGCKPSVITYTILIE----------ATILEG-----RINEALELFDELVSRGLR 233

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  TYNA+I+ +  + M D A+   + +   G  P + +YN++++S+     +E G ++
Sbjct: 234 PDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERL 293

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M+  GC P+  ++++LI     + R  EA   LE M EKG+      Y+   +   +
Sbjct: 294 MKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCK 353

Query: 586 AGRSYVLDELAQKMRFSG 603
            GR  +  E  +KM   G
Sbjct: 354 EGRLDLAIEYLEKMVSDG 371


>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 199/445 (44%), Gaps = 32/445 (7%)

Query: 143 NVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIE--RVCKVIDELFSLDRNMEA 200
           N   V+D+N DSD   +G  S S    ++ K   D   ++  RV +++ +      + +A
Sbjct: 80  NFDPVSDENPDSD---NGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCP-GFSTKA 135

Query: 201 VLDECGINLSHNLVVDVLERF---------RHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
            LDE  I +S  LV +VL                +  ++FF W+G +  + H    Y+ +
Sbjct: 136 ALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLI 195

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           M I   + +F+ M  +++EM E+G  ++  TF+I +     A   ++AV  F     + +
Sbjct: 196 MKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNY 255

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +    + N +L  L   K  K  + ++ + L   ++P++ TY +++    R+  L +  R
Sbjct: 256 RPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHR 315

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +  E+   GF PD    NI+L  L K  K   A+ L   MK  G  P+V  +T       
Sbjct: 316 LLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTT------ 369

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                    LI G      +D       EM + GC PD + Y  +I    +    + A  
Sbjct: 370 ---------LIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQG 420

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +++EM   G  P + TYN +++       +E  R +  EM  RGC P+   Y  L+G L 
Sbjct: 421 LFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLR 480

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVL 574
           +  +  EA++ +  M++KG    +L
Sbjct: 481 NAGKLKEAHEVIRHMVDKGQYVHLL 505


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 183/403 (45%), Gaps = 59/403 (14%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKG 275
           VL     A  P+ R F  +    G A N  TYN ++ ++ GR  + E + S+L +M   G
Sbjct: 129 VLLALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL-SVLRDMRGAG 187

Query: 276 L-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
              +  T+   + AF  A E  +A  + ++M +   K  + T N ++  + ++   ++A+
Sbjct: 188 CDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDAR 247

Query: 335 LLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            +FD++ K    P+  +Y  L+GG+C+V    EA  V+ EM  KG  PDVV    ++  +
Sbjct: 248 KVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVM 307

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
            K G    A+ L   M+ +G   N  ++T +I  FCK+                    + 
Sbjct: 308 CKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSV 367

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCP---------------------------- 465
             Y  LI G+    RMD   +L++EME +G                              
Sbjct: 368 VCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQ 427

Query: 466 -------PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
                  PD +TY++LI+++  +K   +A  ++K M+  G +P   TY  ++  + + GN
Sbjct: 428 MLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGN 487

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            E    + DEM++ G  PD  +Y+VLI GL    R+ EA + L
Sbjct: 488 VERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLL 530



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 170/367 (46%), Gaps = 33/367 (8%)

Query: 240 GFAHNSRTYNSMMSILGRA------RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK 293
           G+A +   YN+++  L  A      R F++M+S      +    ++ T+ I + A     
Sbjct: 118 GYAPSVLAYNAVLLALSDASLPSARRFFDSMLS------DGVAPNVYTYNILVRALCGRG 171

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
            RK+A+++   M          T N L+    R+     A+ L D ++     PNL T+ 
Sbjct: 172 HRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFN 231

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            ++ G C+   + +A +V++EM+ +G  PD V++N ++ G  K+G   +A+ +F  M  K
Sbjct: 232 SVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRK 291

Query: 413 GPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIV 452
           G  P+V ++T +I   CK                     N   +T LI GF  +  +D  
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDA 351

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
              ++EM +    P  + YNALI    +    DEA  + +EM   G KP + TY+ I+ +
Sbjct: 352 LLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSA 411

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y + G+     ++  +M+  G  PD  +Y+ LI  L  + R G+A+   + M+  G++  
Sbjct: 412 YCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPD 471

Query: 573 VLDYNKF 579
            + Y   
Sbjct: 472 EVTYTSL 478



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 16/226 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+ P V+A+N +L  L      S A + F+ M + G +PNV +Y I++   C        
Sbjct: 118 GYAPSVLAYNAVLLALSDASLPS-ARRFFDSMLSDGVAPNVYTYNILVRALC-------- 168

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
               G G+R+       +L++M   GC P+ +TYN L+         D A R+   M   
Sbjct: 169 ----GRGHRKE---ALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREG 221

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G KP + T+N ++    + G  E  RKV+DEM++ G  PD  SY  L+GG      S EA
Sbjct: 222 GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                EM  KG+   V+ +      + +AG       L ++MR  G
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERG 327



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 124/294 (42%), Gaps = 15/294 (5%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +   V   N +L  L  + LP   +     L     PN+ TY +L+   C   +  EA  
Sbjct: 119 YAPSVLAYNAVLLALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALS 178

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           V  +M   G  P+ V +N ++    + G+   A +L ++M+  G  PN+ ++  ++   C
Sbjct: 179 VLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGIC 238

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           K                 RM+    +  EM + G  PDG++YN L+          EA+ 
Sbjct: 239 KAG---------------RMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALS 283

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++ EM R G  P + T+  ++    + GN E    +  EM  RG   ++ ++T LI G  
Sbjct: 284 VFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFC 343

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +    +A   + EM +  ++  V+ YN         GR     EL ++M   G
Sbjct: 344 KKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 16/303 (5%)

Query: 302 FELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           F+ M        V T N L+  L GR    +   +L D       PN  TY  L+  +CR
Sbjct: 145 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCR 204

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              +  A R+ + M + G KP++V  N ++ G+ K G+  DA K+F+ M  +G +P+  S
Sbjct: 205 AGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVS 264

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           Y  ++  +CK           G  +         +  EM  +G  PD +T+ +LI +M  
Sbjct: 265 YNTLVGGYCK----------VGCSHE-----ALSVFAEMTRKGIMPDVVTFTSLIHVMCK 309

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
               + AV + +EM   G +    T+  ++  + + G  +       EM +    P    
Sbjct: 310 AGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVC 369

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y  LI G     R  EA + + EM  KG+K  V+ Y+   +   + G ++   +L Q+M 
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQML 429

Query: 601 FSG 603
            +G
Sbjct: 430 ENG 432



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 157/400 (39%), Gaps = 72/400 (18%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           K G A +  +YN+++    +       +S+  EM  KG++  + TF   ++    A   +
Sbjct: 255 KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLE 314

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
           +AV +   M +   +    T   L++   +     +A L   +++  R  P++  Y  L+
Sbjct: 315 RAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALI 374

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C V  + EA  +  EM  KG KPDVV ++ +L    K G    A +L + M   G  
Sbjct: 375 NGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL 434

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y+ +I   C++                    +   YT LI G      ++    L
Sbjct: 435 PDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSL 494

Query: 456 LKEMEERGCPPDGLTYNALI-----------------KLMKIQKMP-------------- 484
             EM + G  PD +TY+ LI                 KL   + +P              
Sbjct: 495 HDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRN 554

Query: 485 -------------------DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
                              +EA ++Y+ ++   +      Y++++  + + GN       
Sbjct: 555 AELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSF 614

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +M++ G  P+  S   LI GL  +    EA + ++++L
Sbjct: 615 HKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLL 654



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 12/294 (4%)

Query: 248 YNSMMS---ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304
           YN++++   ++GR  +   +V  +E  G K    + T+   ++A+    +   A  + + 
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGVKP--DVVTYSTILSAYCKNGDTHSAFQLNQQ 427

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M +        T + L+  L   K   +A +LF + +     P+  TYT L+ G C+  N
Sbjct: 428 MLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGN 487

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           +  A  + +EM+  G  PDVV +++++ GL K  +  +A +L   +  + P P    Y  
Sbjct: 488 VERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDA 547

Query: 424 MIWKFCKQNAAVYT--CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           ++   C +NA + +   L+ GF  +  M+    + + + +R    DG  Y+ LI     +
Sbjct: 548 LMR--CCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCRE 605

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
               +A+  +K+M++ GF P   +   +++  F+ G      +V  +++   CC
Sbjct: 606 GNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLN--CC 657


>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 199/445 (44%), Gaps = 32/445 (7%)

Query: 143 NVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIE--RVCKVIDELFSLDRNMEA 200
           N   V+D+N DSD   +G  S S    ++ K   D   ++  RV +++ +      + +A
Sbjct: 84  NFDPVSDENPDSD---NGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCP-GFSTKA 139

Query: 201 VLDECGINLSHNLVVDVLERF---------RHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
            LDE  I +S  LV +VL                +  ++FF W+G +  + H    Y+ +
Sbjct: 140 ALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLI 199

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           M I   + +F+ M  +++EM E+G  ++  TF+I +     A   ++AV  F     + +
Sbjct: 200 MKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNY 259

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +    + N +L  L   K  K  + ++ + L   ++P++ TY +++    R+  L +  R
Sbjct: 260 RPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHR 319

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +  E+   GF PD    NI+L  L K  K   A+ L   MK  G  P+V  +T       
Sbjct: 320 LLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTT------ 373

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                    LI G      +D       EM + GC PD + Y  +I    +    + A  
Sbjct: 374 ---------LIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQG 424

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +++EM   G  P + TYN +++       +E  R +  EM  RGC P+   Y  L+G L 
Sbjct: 425 LFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLR 484

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVL 574
           +  +  EA++ +  M++KG    +L
Sbjct: 485 NAGKLKEAHEVIRHMVDKGQYVHLL 509


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 176/388 (45%), Gaps = 31/388 (7%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           V  +L   R   + A +FF WAG + GF H + +Y  ++ ++ RAR +      ++E+  
Sbjct: 132 VSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIM 191

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
              + M  F +  N F      +               +G    + L        L +EA
Sbjct: 192 NSRMDM-GFPVC-NIFDMLWSTRNICV-----------SGSGVFDVLFSVFVELGLLEEA 238

Query: 334 QLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
              F ++++ R  P   +   LL    +  N     + +N+MI  G  P V  +N+M++ 
Sbjct: 239 NECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDY 298

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L K G   ++ +LF  M+  G SP+V                 Y  LI G+G    ++ V
Sbjct: 299 LCKEGDLENSRRLFVQMREMGLSPDV---------------VTYNSLIDGYGKVGSLEEV 343

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             L  EM++ GC PD +TYN LI    K +KMP  A   + EM  +G KP + TY+ ++ 
Sbjct: 344 ASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP-RAFEYFSEMKNNGLKPNVVTYSTLID 402

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           ++ + G  +   K++ +M R G  P++ +YT LI          EA+K L +ML+ G+K 
Sbjct: 403 AFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKL 462

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
            ++ Y      L +AGR    +E+ + M
Sbjct: 463 NIVTYTALLDGLCKAGRMIEAEEVFRSM 490



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 164/359 (45%), Gaps = 22/359 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + +  TYNS++   G+    E + S+  EM + G +  + T+   +N +   ++  +A
Sbjct: 319 GLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRA 378

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
              F  M     K  V T + L++   +  + + A  LF D  +    PN  TYT L+  
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  NL EA ++ N+M+  G K ++V +  +L+GL K G+  +A ++F  M   G SPN
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
            + YT ++  + K                     +  +Y  +I G  ++R+++    +L+
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 558

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ RG   + +    +I          +A+  ++EM   G + TI TY +++    + G
Sbjct: 559 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAG 618

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             E+    +  M+  G  P+   YT LI GL   +    A K  +EM  +GM   +  +
Sbjct: 619 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAF 677



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 166/366 (45%), Gaps = 24/366 (6%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFE 303
           +R+ N ++  L ++   + +     +M   G+  S+ T+ + ++      + + +  +F 
Sbjct: 254 ARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFV 313

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
            M +      V T N L++  G+    +E   LF+++K     P++ TY  L+  +C+ +
Sbjct: 314 QMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFE 373

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            +  A   ++EM + G KP+VV ++ +++   K G    AIKLF  M+  G  PN  +YT
Sbjct: 374 KMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYT 433

Query: 423 IMI------------WKF--------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +I            WK          K N   YT L+ G     RM    ++ + M + 
Sbjct: 434 SLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD 493

Query: 463 GCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           G  P+   Y AL+   +K ++M D A++I K+M     KP +  Y  I+  +      E 
Sbjct: 494 GISPNQQVYTALVHGYIKAERMED-AMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE 552

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            + + +EM  RG   +    T +I       +S +A  + +EM + G++A ++ Y     
Sbjct: 553 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLID 612

Query: 582 DLSRAG 587
            L +AG
Sbjct: 613 GLCKAG 618



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 167/418 (39%), Gaps = 59/418 (14%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N +++   +F    R AF +F    +  G   N  TY++++    +    +  + + 
Sbjct: 360 ITYNGLINCYCKFEKMPR-AFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMMQGAIKLF 417

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            +M   GLL  E T+   ++A   A    +A  +   M +   K  + T   LL+ L ++
Sbjct: 418 VDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 477

Query: 328 KLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ +F   LK   +PN   YT L+ G+ + + + +A ++  +M +   KPD++ +
Sbjct: 478 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 537

Query: 387 -----------------------------------NIMLEGLLKIGKRSDAIKLFEVMKA 411
                                                +++   K GK SDA+  F+ M+ 
Sbjct: 538 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 597

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
            G    + +Y ++I   CK                     N AVYT LI G      ++ 
Sbjct: 598 VGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIES 657

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              L  EM+ RG  PD   + ALI          EA+ +   M     +  +H Y  ++ 
Sbjct: 658 AKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 717

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            + Q G     RK ++EMI +G  P++     L+     + +  EA +   EM   G+
Sbjct: 718 GFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGL 775


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 170/386 (44%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGR-ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYNS++ +L +  + FE    + E M +K +     +   ++ F      + A
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F+ M   K      T   L++  G+     E Q LF ++  R   P+  TYT L+  
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   ++ A  + NEM+  G  P++V +  +++GL K G+   A +L + M+ KG   N
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  M+   CK                     +A  YT +I  +     +D  + LL+
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG  P  +T+N L+    +  M ++  R+   M+  G  P   TYN +MK +    
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRN 622

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +     K++  M  +G  PD N+Y +LI G        EA+   +EM+EKG    V  YN
Sbjct: 623 SMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  +  +     EL ++MR  G
Sbjct: 683 ALIKRFYKKKKILEARELFEEMRGHG 708



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY +++ +  +A +     S+  EM + G+  ++ T+   ++      E   A
Sbjct: 428 GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA 487

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             + + M K   +  V   N ++  + ++   ++A  L  +++     P+  TYT ++  
Sbjct: 488 NELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+ ++ +A ++  EM+D+G +P VV  N+++ G   +G   D  +L   M  KG  P+
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  ++ + C +N+               M+    + K M  +G  PD  TYN LIK 
Sbjct: 608 AITYNTLMKQHCIRNS---------------MNTTTKIYKRMRNQGVAPDSNTYNILIKG 652

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               +   EA  +YKEM+  G+ PT+ +YN ++K +++       R++++EM   G   D
Sbjct: 653 HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVAD 712

Query: 538 DNSYTVLI 545
              Y   +
Sbjct: 713 GEIYNFFV 720



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 194/469 (41%), Gaps = 42/469 (8%)

Query: 166 EITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR 225
           +IT+V     ++P  + R+ K  +  F  D  +  +++   I   +NLV+   +  R  R
Sbjct: 76  DITAVIKLRRSEP--LHRILKAHESNFRYDHLIWVLMN---IKNDYNLVLAFFDWARVRR 130

Query: 226 RPAFRFFCW------AGDKPGFAH---NSRTYNSMMSILGRARQF-ETMVSMLEEMGEKG 275
            P+    C         +    AH   +    NS + I  +  QF   ++   +  G   
Sbjct: 131 EPSLEARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIYTYKYWGPNP 190

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
           +     F I            +A  + + +  Y     VD+ N  L  +  +    E  +
Sbjct: 191 I----AFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAI 246

Query: 336 -LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            +F   ++  + N T+Y +++   CR+  + EA R+  +M  +   PDVV+++ +++G  
Sbjct: 247 KVF--CEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAA 434
            +G+   A+KL + M+ KG  PN  +Y  +I   CK                     +  
Sbjct: 305 HLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           VYT LI GF     +        EM  +   PD +TY  LI+         E   ++ EM
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +  G KP   TY  ++  Y + G       + +EM++ G  P+  +Y  LI GL      
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGEL 484

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             A + L+EM +KG++  V  YN     + +AG      +L ++M  +G
Sbjct: 485 DTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 48/295 (16%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           K G   N   YNSM++ + +A   E  + +++EM   G+                     
Sbjct: 496 KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI------------------DPD 537

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+    +++ Y     +D               K  +LL + L     P + T+ VL+ G
Sbjct: 538 AITYTTVIDAYCRLGDID---------------KAHKLLQEMLDRGLQPTVVTFNVLMNG 582

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C +  L +  R+   M++KG  PD + +N +++        +   K+++ M+ +G +P+
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y I+I   CK                R +   + L KEM E+G  P   +YNALIK 
Sbjct: 643 SNTYNILIKGHCKA---------------RNLKEAWFLYKEMIEKGYVPTVTSYNALIKR 687

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
              +K   EA  +++EM   G       YN  +   ++ G+ E+   + DE I +
Sbjct: 688 FYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|115459468|ref|NP_001053334.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|21741854|emb|CAD41444.1| OSJNBa0019D11.15 [Oryza sativa Japonica Group]
 gi|113564905|dbj|BAF15248.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|116310729|emb|CAH67525.1| OSIGBa0131L05.6 [Oryza sativa Indica Group]
 gi|125549050|gb|EAY94872.1| hypothetical protein OsI_16672 [Oryza sativa Indica Group]
 gi|125591012|gb|EAZ31362.1| hypothetical protein OsJ_15488 [Oryza sativa Japonica Group]
 gi|215697100|dbj|BAG91094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 464

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 192/433 (44%), Gaps = 36/433 (8%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           + EA L  CGI  +  +   VL       RP  A RFF W+G      H    +N ++ I
Sbjct: 33  DAEAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGRS--VKHTGYAWNLLVDI 90

Query: 255 LGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
           LG+A   E M   +  M ++G  L+++ TF    +++ A+   +KAV  F++M KY  + 
Sbjct: 91  LGKADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLRKAVEAFDVMGKYGVEP 150

Query: 313 GVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
               +N LL  + R +   + AQ LF++ K    P+  T+ +LL  W +  N   A   +
Sbjct: 151 DAVALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILLEAWEKEGNAQRAKSTF 210

Query: 372 NEMI-----DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY----- 421
            EMI     D G  P   A++  L  L++  +  +A+K  +VM++KG  P ++ +     
Sbjct: 211 GEMIVRVGWDAGNMP---AYDAFLSTLVRGDQFGEALKFLQVMRSKGCLPGLKFFARAID 267

Query: 422 ----------TIMIWKFCKQNAAV------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                     ++ IW+    +A +      Y  +I    +    D    +L EM   G  
Sbjct: 268 LVVRKRDYANSLAIWQMMISDAGLVPNLPMYNAMIDLCCSVGDTDYALRMLDEMPFNGVF 327

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D +TYNA+++ +  Q+   EA     EM ++   P+       +  + +  N      V
Sbjct: 328 ADFITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAISMFSKEFNPSAAIDV 387

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           W  ++     P D S   LI GL+   R  E  KY +EML+ G++ P    +       +
Sbjct: 388 WHCIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIELPQSTIDNMKRTFDK 447

Query: 586 AGRSYVLDELAQK 598
            G+ +  D +A++
Sbjct: 448 VGKHHTYDHIARR 460


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 171/366 (46%), Gaps = 17/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  HN  TY+ +++   R  Q    +++L +M + G   ++ T    +N +  +K   +A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           VA+ + M    ++    T N L+  L       EA  L D++  +   P+L TY V++ G
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  +   A  + N+M     +P V+ +N +++GL K     DA+ LF+ M+ KG  PN
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y+ +I   C               N  R      LL +M ER   PD  T++ALI  
Sbjct: 291 VVTYSSLISCLC---------------NYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA ++Y EMV+    P+I TY+ ++  +      +  +++++ M+ + C PD
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y  LI G     R  E  +   EM ++G+    + YN     L +AG   +  E+ +
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455

Query: 598 KMRFSG 603
           +M   G
Sbjct: 456 EMVSDG 461



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 171/351 (48%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  N+ T+N+++  L    +    +++++ M  KG    + T+ + +N      +   A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M + K + GV   N +++ L + K   +A  LF +++ +   PN+ TY+ L+  
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI++   PDV   + +++  +K GK  +A KL++ M  +   P+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+ +I  FC  +               R+D    + + M  + C PD +TYN LIK 
Sbjct: 361 IVTYSSLINGFCMHD---------------RLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 405

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               K  +E + +++EM + G      TYN++++  FQ G+ +M ++++ EM+  G  P+
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y  L+ GL    +  +A    E +    M+  +  YN     + +AG+
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 179/385 (46%), Gaps = 32/385 (8%)

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
           D  F+L   ME    E G+ L +N ++D L +++H    A   F     K G   N  TY
Sbjct: 238 DLAFNLLNKMEQGKLEPGV-LIYNTIIDGLCKYKHMD-DALNLFKEMETK-GIRPNVVTY 294

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +S++S L    ++     +L +M E+ +   + TF   ++AF    +  +A  +++ M K
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLM 365
                 + T + L+          EA+ +F+ +  KH F P++ TY  L+ G+C+ K + 
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVE 413

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   V+ EM  +G   + V +NI+++GL + G    A ++F+ M + G  PN+ +Y  ++
Sbjct: 414 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + YN +I     +   +EA  ++KEM   G  P    YN ++++  + G+ E   ++
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 593

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLIS 550
             EM  R C    ++ T+   GL++
Sbjct: 594 IKEM--RSCGFAGDASTI---GLVT 613



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++ EM+     P ++  + +L  + K+ K    I L E M+  G   N  +Y+I
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC+               R ++ +   +L +M + G  P+ +T ++L+      K 
Sbjct: 122 LINCFCR---------------RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EAV +  +M  +G++P   T+N ++   F          + D M+ +GC PD  +Y V
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ GL  +  +  A+  L +M +  ++  VL YN     L +
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  DA+ LF  M    P P++  ++ ++    K N               + D+V  L +
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMN---------------KFDVVISLGE 105

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M+  G P +  TY+ LI     +     A+ +  +M++ G++P I T + ++  Y  + 
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                  + D+M   G  P+  ++  LI GL   +++ EA   ++ M+ KG +  ++ Y 
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKFE 606
                L + G + +   L  KM   GK E
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKME-QGKLE 253


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 170/365 (46%), Gaps = 19/365 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  ++ +Y +++  L  +++++ +  +  EM EK  +  E TF + +  F      ++A
Sbjct: 243 GFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERA 302

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + + E M ++         N ++ ++ +     +A +LL D   +   P+  +YT +L G
Sbjct: 303 IQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKG 362

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR +   +A  + NEM+     P+ V  N  +  L + G    AI L E M   G +  
Sbjct: 363 LCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVG 422

Query: 418 VRSYTIMIWKFC-----------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           V +Y  ++  FC                 K N   YT L+TG  N  R+D   +L+ EM 
Sbjct: 423 VVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEML 482

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
              CPP+ +T+N L+     +   +EA+ + ++M+  G  P + TYN ++    +  + E
Sbjct: 483 RGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSE 542

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++   ++ +G  PD  +++ +IG L  +DR  EA +    + + GM+   + YNK  
Sbjct: 543 DALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKIL 602

Query: 581 ADLSR 585
             L +
Sbjct: 603 LGLCK 607



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 15/262 (5%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           R ++     LL D L+    PN+ TYTVLL   CR     +A  V +EM  KG  P++V 
Sbjct: 156 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVT 215

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N+++ G+ + G+  DA +L   + + G  P+  SYT ++   C                
Sbjct: 216 YNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCAS-------------- 261

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            +R D V +L  EM E+ C P+ +T++ LI+      M + A+++ ++M   G       
Sbjct: 262 -KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTL 320

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            N+++ S  + G  +   K+ ++M   GC PD  SYT ++ GL   +R  +A + L EM+
Sbjct: 321 CNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMV 380

Query: 566 EKGMKAPVLDYNKFAADLSRAG 587
                   + +N F   L + G
Sbjct: 381 RNNCPPNEVTFNTFICILCQKG 402



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 165/366 (45%), Gaps = 20/366 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY  ++  + R   FE  +++L+EM  KG   ++ T+ + +N          A
Sbjct: 173 GCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 232

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   +  Y F+    +   LL+ L  SK   + + LF ++  +   PN  T+ +L+  
Sbjct: 233 RELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 292

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR   +  A +V  +M + G   +    NI++  + K G+  DA KL   M + G +P+
Sbjct: 293 FCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPD 352

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             SYT ++   C+                 R D   +LL EM    CPP+ +T+N  I +
Sbjct: 353 TISYTTVLKGLCRA---------------ERWDDAKELLNEMVRNNCPPNEVTFNTFICI 397

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  + + ++A+ + ++M   G    + TYN ++  +   G+ +   +++  M    C P+
Sbjct: 398 LCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPN 454

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT L+ GL + +R   A + + EML       V+ +N   +   + G      EL +
Sbjct: 455 TITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVE 514

Query: 598 KMRFSG 603
           +M   G
Sbjct: 515 QMMEHG 520



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 24/334 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ +Y +++  L RA +++    +L EM        E TF   +         ++A
Sbjct: 348 GCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQA 407

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + + E M+++    GV T N L+           A  LF  +  +  PN  TYT LL G 
Sbjct: 408 IMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--PNTITYTTLLTGL 465

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C  + L  A  +  EM+     P+VV  N+++    + G   +AI+L E M   G +PN+
Sbjct: 466 CNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNL 525

Query: 419 RSYTIM---IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +Y  +   I K C    A+                  +LL  +  +G  PD +T++++I
Sbjct: 526 ITYNTLLDGITKDCSSEDAL------------------ELLHGLVSKGVSPDVITFSSII 567

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            ++  +   +EAV+++  +   G +P    YN I+    +    +     +  M+  GC 
Sbjct: 568 GILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCM 627

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           P++++Y +LI GL  +    EA   L  +  +G+
Sbjct: 628 PNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 15/254 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TYT L+   C    + +A  + ++M+ +G +P+VV + ++LE + +      A+ +
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAV 200

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M+AKG +PN+ +Y ++I   C++                R+D   +LL  +   G  
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMCREG---------------RVDDARELLNRLPSYGFQ 245

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++Y  L+K +   K  D+   ++ EM+     P   T++M+++ + + G  E   +V
Sbjct: 246 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 305

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            ++M   GC  +     ++I  +  Q R  +A+K L +M   G     + Y      L R
Sbjct: 306 LEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCR 365

Query: 586 AGRSYVLDELAQKM 599
           A R     EL  +M
Sbjct: 366 AERWDDAKELLNEM 379



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------- 430
           G  PDV     ++  L + G+ SDA ++    +  G   +V +Y  ++  +C+       
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      +A  YT LI    +R R+     LL +M  RGC P+ +TY  L++ M  
Sbjct: 131 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
               ++A+ +  EM   G  P I TYN+I+    + G  +  R++ + +   G  PD  S
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVS 250

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           YT L+ GL +  R  +  +   EM+EK      + ++       R G
Sbjct: 251 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGG 297


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 21/276 (7%)

Query: 332 EAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +A  L D+++++ + P++ TY VL+ G C+   L EA +  N M   G +P+V+ HNI+L
Sbjct: 100 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIIL 159

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------- 431
             +   G+  DA KL   M  KG SP+V ++ I+I   C+Q                   
Sbjct: 160 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCT 219

Query: 432 -NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            N+  Y  L+ GF   ++MD   + L  M  RGC PD +TYN L+  +      D AV I
Sbjct: 220 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 279

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             ++   G  P + TYN ++    + G  E   K+ DEM R+G  PD  +Y+ L+ GL  
Sbjct: 280 LNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 339

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           + +  EA K+  ++   G++   + YN     L ++
Sbjct: 340 EGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 375



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 188/431 (43%), Gaps = 29/431 (6%)

Query: 150 DNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL 209
           D+   D +C+ N S+++I  V Y  +  P  +++   +   +F +   + +V+  C IN 
Sbjct: 16  DSTAPDPKCNKNKSKTKI--VHYGLSIPPFHLQQKTPLPIPIFIIFALIISVVSICCINQ 73

Query: 210 SHNLVVDVLERFRHARRP---------AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ 260
                   L  F    +          A +      +K G   +  TYN +++ + +  +
Sbjct: 74  QTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNK-GSKPDVVTYNVLINGICKEGR 132

Query: 261 FETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
            +  +  L  M   G   ++ T  I + +  +      A  +   M +      V T N 
Sbjct: 133 LDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNI 192

Query: 320 LLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           L+  L R  L   A  + +K+  H  TPN  +Y  LL G+C+ K +  A    + M+ +G
Sbjct: 193 LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG 252

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
             PD+V +N +L  L K GK   A+++   + +KG SP      ++I          Y  
Sbjct: 253 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP------VLI---------TYNT 297

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           +I G     + +    LL EM  +G  PD +TY++L+  +  +   DEA++ + ++   G
Sbjct: 298 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 357

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P   TYN IM    ++   +        MI + C P + +YT+LI G+  +  + EA 
Sbjct: 358 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 417

Query: 559 KYLEEMLEKGM 569
             L E+  +G+
Sbjct: 418 DLLNELCSRGL 428



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 15/257 (5%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +L+ ++  +   C+   + +A ++ +EM +KG KPDVV +N+++ G+ K G+  +AIK  
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             M + G  PNV ++ I++   C           TG    R MD    LL +M  +GC P
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCS----------TG----RWMD-AEKLLSDMLRKGCSP 185

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
             +T+N LI  +  Q +   A+ I ++M   G  P   +YN ++  + +    +   +  
Sbjct: 186 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 245

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D M+ RGC PD  +Y  L+  L    +   A + L ++  KG    ++ YN     LS+ 
Sbjct: 246 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 305

Query: 587 GRSYVLDELAQKMRFSG 603
           G++    +L  +MR  G
Sbjct: 306 GKTERAIKLLDEMRRKG 322



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 2/150 (1%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++  L +  + E  + +L+EM  KGL   + T+   ++  +   +  +A+  F  +
Sbjct: 294 TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL 353

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                +    T N ++  L +S+    A   L   +  R  P   TYT+L+ G       
Sbjct: 354 EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLA 413

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            EA  + NE+  +G      A  +    LL
Sbjct: 414 KEALDLLNELCSRGLVKKSSAEQVAAPVLL 443


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 187/413 (45%), Gaps = 27/413 (6%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKI 284
           + A R     G+K G + N  TYN ++  L RAR  +  + +   M +KGL+  + T+ I
Sbjct: 232 KDAKRVLLEMGEK-GCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDI 290

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHR 343
            +N F   K  ++A  +   M     K    T N L++   R    ++A  + D++    
Sbjct: 291 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 350

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
              NL  +  LL G C+   + +A  +  EM++KG +PD   +++++EG  +    + A 
Sbjct: 351 IEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAF 410

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGF 443
           +L + MK +  +P V +Y+++I   C                    K NA VYT L+T  
Sbjct: 411 ELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAH 470

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               R++    +L+ M E+G  PD   YN+LI      K  +EA     EM+    +P  
Sbjct: 471 AKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNA 530

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           HTY   +  Y + G  E+  + ++EM+  G  P+   YT LI G   +    EA+     
Sbjct: 531 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 590

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRFSGKFEVSNVLA 612
           +L + +   V  Y+     LSR G+ +    +  EL +K      F  +++++
Sbjct: 591 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 643



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 16/323 (4%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F + M+++       +AV +F     ++F+  + + N LL +L +    +    +FD + 
Sbjct: 148 FDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC 207

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
            H+  P++ TYT ++   C+V N+ +A RV  EM +KG  P++V +N+++ GL +     
Sbjct: 208 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLD 267

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +AI+L   M  KG  P++ +Y I+I  FC +               +R      +L EM 
Sbjct: 268 EAIELKRSMVDKGLVPDLYTYDILINGFCME---------------KRSREAKLMLLEMI 312

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           + G  P+ +TYNALI     Q   ++A RI  EMV  G +  +  +N ++    + G  E
Sbjct: 313 DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME 372

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++  EM+ +G  PD  +Y++LI G         A++ L+EM ++ +   VL Y+   
Sbjct: 373 KALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVII 432

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
             L R G     + + ++M  +G
Sbjct: 433 NGLCRCGNLQGTNAILREMVMNG 455



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 173/383 (45%), Gaps = 21/383 (5%)

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAI 301
            + +TY+ ++  L R  +      +  E+ EKGLL +  T+   ++         KA  +
Sbjct: 598 QDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 657

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
            E M        + T N L++ L ++   + A+ LFD ++ R  TPN  TY  ++ G+C+
Sbjct: 658 LEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK 717

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            KN   A ++  EM+ +G  PD   +N++L    K  K   A+ LF+ M  KG +  V S
Sbjct: 718 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-S 776

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           +  +I  +CK                 ++     LL+EM E+   P+ +TY +LI     
Sbjct: 777 FNTLIEGYCKSG---------------KLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCK 821

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
             M  EA R++ EM      PT  TY  ++  Y   GN      +++EM+ +G  PD  +
Sbjct: 822 AGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT 881

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y V+I     +    EA K  +E+L KGM   V  Y+     L +    + + +L  ++ 
Sbjct: 882 YYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIG 941

Query: 601 FSG---KFEVSNVLARWAETTKN 620
            SG        +V+AR  +   N
Sbjct: 942 ESGFRLGLPTCSVIARGFQIAGN 964



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 164/359 (45%), Gaps = 17/359 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +M+S   +    +    +L EMGEKG   ++ T+ + +     A+   +A+ +   M
Sbjct: 217 TYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM 276

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T + L+      K  +EA+L L + +     P   TY  L+ G+ R  ++
Sbjct: 277 VDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDI 336

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R+ +EM+  G + +++  N +L G+ K GK   A+++ + M  KG  P+ ++Y+++
Sbjct: 337 EQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLL 396

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C+                + M   ++LL EM++R   P  LTY+ +I  +      
Sbjct: 397 IEGHCRG---------------QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 441

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
                I +EMV +G KP    Y  +M ++ + G  E  R + + M  +G  PD   Y  L
Sbjct: 442 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 501

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           I G     R  EA  YL EMLE+ ++     Y  F    S+AG   + D    +M   G
Sbjct: 502 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 560



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 163/360 (45%), Gaps = 22/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +S+TY+ ++    R +       +L+EM ++ L  ++ T+ + +N        +  
Sbjct: 385 GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGT 444

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            AI   M     K        L+    +    +E++++ ++++ +   P++  Y  L+ G
Sbjct: 445 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 504

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K + EA     EM+++  +P+   +   ++G  K G+   A + F  M + G  PN
Sbjct: 505 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 564

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  YT +I   CK                    Q+   Y+ LI G     +M   + +  
Sbjct: 565 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 624

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E++E+G  P+  TYN+LI     Q   D+A ++ +EM   G  P I TYN+++    + G
Sbjct: 625 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAG 684

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E  + ++D++  RG  P+  +Y  ++ G         A++ LEEML +G+      YN
Sbjct: 685 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 744



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 171/364 (46%), Gaps = 23/364 (6%)

Query: 206  GIN---LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
            GIN   +++N+++D L +     R    F    G   G   N  TY +M+    +++   
Sbjct: 665  GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR--GLTPNCVTYAAMVDGYCKSKNPT 722

Query: 263  TMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
                +LEEM  +G+      + + +N     ++ +KA+ +F+ M +  F + V + N L+
Sbjct: 723  AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLI 781

Query: 322  ENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
            E   +S KL +   LL + ++ +F PN  TYT L+   C+   + EA R+W EM ++   
Sbjct: 782  EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 841

Query: 381  PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
            P    +  +L G   IG  S+   LFE M AKG  P+  +Y +MI  +C++   +  C  
Sbjct: 842  PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC-- 899

Query: 441  TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
                          L  E+  +G P     Y+ALI+ +  ++   E +++  E+  SGF+
Sbjct: 900  -------------KLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFR 946

Query: 501  PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
              + T ++I + +   GN +   +V   M++ G   +  S   L+ G  +   S ++   
Sbjct: 947  LGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNL 1006

Query: 561  LEEM 564
            L++M
Sbjct: 1007 LKQM 1010



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 16/300 (5%)

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           L N   +    D I C++ N   S L     ++        +PN   + +L+  + ++  
Sbjct: 102 LCNSNWYGPASDLIKCIIRN-SDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGF 160

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L+EA  V+    +  F+P +++ N +L  LLK  K     K+F+ M A    P+V +YT 
Sbjct: 161 LVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTN 220

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI   CK             GN +    V   L EM E+GC P+ +TYN +I  +   ++
Sbjct: 221 MISAHCK------------VGNVKDAKRV---LLEMGEKGCSPNLVTYNVIIGGLCRARL 265

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+ + + MV  G  P ++TY++++  +         + +  EMI  G  P+  +Y  
Sbjct: 266 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 325

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           LI G + Q    +A++  +EM+  G++A ++ +N     + +AG+     E+ Q+M   G
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 148/293 (50%), Gaps = 26/293 (8%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+  L +++   EA  L +++ +    P++ TYT L+ G+C+ K   +A RV+ ++
Sbjct: 56  TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 115

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQ-- 431
           + +GF+PDVV ++ +++GL K G+  +AI LF  M   G   PN  +Y  +I  FC+   
Sbjct: 116 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 175

Query: 432 ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                             +   YT L+ GF    R+D  YDLL +M  +G  P+ +T+ +
Sbjct: 176 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTS 235

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK-VWDEMIRR 532
           L+  +  +    +AV I  EM R    PT++TYN I+  Y +    E  RK + +EM   
Sbjct: 236 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEM--- 292

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            C P+  S+ ++I GL   +RS EA + +EE   +     V+ Y      L R
Sbjct: 293 DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCR 345



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 160/338 (47%), Gaps = 23/338 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS++S L +A +      +LEEM   G +  + T+   +  F  +K+   A+ +FE +
Sbjct: 56  TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 115

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKN 363
               F+  V T +CL++ L +    KEA  LF ++       PN  TY  L+ G+CR+  
Sbjct: 116 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 175

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + EA  +   M + G  PDVV +  ++ G  K+ +  DA  L   M  KG +PNV ++T 
Sbjct: 176 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTS 235

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQK 482
           ++   C++N               R+     +L EM  + C P   TYN ++    ++ +
Sbjct: 236 LMDGLCREN---------------RLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQ 280

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           + +    + +EM      P + ++N++++   +        ++ +E  RR C PD   YT
Sbjct: 281 LEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYT 337

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAP-VLDYNKF 579
            +I  L  + +  EA +   +MLE+    P  + Y+ F
Sbjct: 338 TVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P   TY  L+ G C+ +   EA  +  EM+  G  PD+  +  ++ G  K  K  DA++
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG- 463
           +FE + A+G  P+V                 Y+CLI G     R+    DL   M + G 
Sbjct: 111 VFEQLVARGFRPDV---------------VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS 155

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           C P+ +TYN+LI    ++ KM DEA+ + + M  +G  P + TY  +M  + +    +  
Sbjct: 156 CMPNTVTYNSLISGFCRMGKM-DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 214

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             + ++M R+G  P+  ++T L+ GL  ++R  +A   L EM  K     V  YN     
Sbjct: 215 YDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 274

Query: 583 LSRA-----GRSYVLDEL 595
             R       R ++L+E+
Sbjct: 275 YCRVNQLEEARKFMLEEM 292



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TYNS++S   R  + +  +++LE M E G    + T+   MN F        A  + 
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 218

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
             M +      V T   L++ L R ++L     +L +  +   +P + TY  +L G+CRV
Sbjct: 219 NQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRV 278

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L EA +   E +D    P+VV+ NIM+ GL K+ + S+A++L E  + +  +P+V  Y
Sbjct: 279 NQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 336

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           T +I   C++      C +      R+M         +EE GC P+ +TY+  
Sbjct: 337 TTVIDVLCREKKVDEACRVY-----RKM---------LEEPGCLPNSITYSTF 375



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%)

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           PT  TYN ++    +         + +EM+  GC PD  +YT LI G     +S +A + 
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            E+++ +G +  V+ Y+     L + GR     +L  +M  SG
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 154


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 170/386 (44%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGR-ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYNS++ +L +  + FE    + E M +K +     +   ++ F      + A
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTA 382

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F+ M   K      T   L++  G+     E Q LF ++  R   P+  TYT L+  
Sbjct: 383 NKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   ++ A  + NEM+  G  P++V +  +++GL K G+   A +L + M+ KG   N
Sbjct: 443 YCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  M+   CK                     +A  YT +I  +     +D  + LL+
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG  P  +T+N L+    +  M ++  R+   M+  G  P   TYN +MK +    
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRN 622

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +     K++  M  +G  PD N+Y +LI G        EA+   +EM+EKG    V  YN
Sbjct: 623 SMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  +  +     EL ++MR  G
Sbjct: 683 ALIKRFYKKRKFXEARELFEEMRGHG 708



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 146/308 (47%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY +++ +  +A +     S+  EM + G+  ++ T+   ++      E   A
Sbjct: 428 GLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTA 487

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             + + M K   +  V   N ++  + ++   ++A  L  +++     P+  TYT ++  
Sbjct: 488 NELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA 547

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+ ++ +A ++  EM+D+G +P VV  N+++ G   +G   D  +L   M  KG  P+
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  ++ + C +N+               M+    + K M  +G  PD  TYN LIK 
Sbjct: 608 AITYNTLMKQHCIRNS---------------MNTTTKIYKRMRNQGVAPDSNTYNILIKG 652

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               +   EA  +YKEM+  G+ PT+ +YN ++K +++   +   R++++EM   G   D
Sbjct: 653 HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712

Query: 538 DNSYTVLI 545
              Y   +
Sbjct: 713 GEIYNFFV 720



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 199/472 (42%), Gaps = 48/472 (10%)

Query: 166 EITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR 225
           +IT+V     ++P  + R+ K  +  F  D  +  +++   I   +NLV+   +  R  R
Sbjct: 76  DITAVIKLRRSEP--LHRILKAHESNFRYDHLIWVLMN---IKNDYNLVLAFFDWARVRR 130

Query: 226 RPAFRFFCW------AGDKPGFAH---NSRTYNSMMSILGRARQF-ETMVSMLEEMGEKG 275
            P+    C         +    AH   +    NS + I  +  QF   ++   +  G   
Sbjct: 131 EPSLEARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIYTYKYWGPNP 190

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
           +     F I            +A  + + +  Y     VD+ N  L  +  +    E  +
Sbjct: 191 I----AFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAI 246

Query: 336 -LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            +F   ++  + N T+Y +++   CR+  + EA R+  +M  +   PDVV+++ +++G  
Sbjct: 247 KVF--CEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAA 434
            +G+   A+KL + M+ KG  PN  +Y  +I   CK                     +  
Sbjct: 305 HLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 435 VYTCLITGF---GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           VYT LI GF   G+ R  +  +D   EM  +   PD +TY  LI+         E   ++
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFD---EMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM+  G KP   TY  ++  Y + G       + +EM++ G  P+  +Y  LI GL   
Sbjct: 422 HEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                A + L+EM +KG++  V  YN     + +AG      +L ++M  +G
Sbjct: 482 GELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG 533



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 124/295 (42%), Gaps = 48/295 (16%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           K G   N   YNSM++ + +A   E  + +++EM   G+                     
Sbjct: 496 KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI------------------DPD 537

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+    +++ Y     +D               K  +LL + L     P + T+ VL+ G
Sbjct: 538 AITYTTVIDAYCRLGDID---------------KAHKLLQEMLDRGLQPTVVTFNVLMNG 582

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C +  L +  R+   M++KG  PD + +N +++        +   K+++ M+ +G +P+
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y I+I   CK                R +   + L KEM E+G  P   +YNALIK 
Sbjct: 643 SNTYNILIKGHCKA---------------RNLKEAWFLYKEMIEKGYVPTVTSYNALIKR 687

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
              ++   EA  +++EM   G       YN  +   ++ G+ E+   + DE I +
Sbjct: 688 FYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 23/348 (6%)

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKGLLSMETFKIAMNAFAA 291
           W G +P        +N+++  L +  + E  +S+LEEM  G     +  T+   ++ F  
Sbjct: 350 WVGVEPDVV----LFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFK 405

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
           A    +A  +F  MN+   +  V T+N L++ L +      A   F+++K +    N  T
Sbjct: 406 AGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAAT 465

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           YT L+  +C V N+  A + + EM+  G  PD V +  ++ GL   G+ +DA  +   +K
Sbjct: 466 YTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLK 525

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G S +   Y ++I  FCK               +++++ VY+LL EMEE G  PD +T
Sbjct: 526 LAGFSLDRSCYNVLISGFCK---------------KKKLERVYELLTEMEETGVKPDTIT 570

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN LI  +        A ++ ++M++ G +P++ TY  I+ +Y    N + G K++ EM 
Sbjct: 571 YNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMC 630

Query: 531 RRGCCPDDNS-YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                P +   Y +LI  L   +    A   +E+M  K ++     YN
Sbjct: 631 STSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYN 678



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 164/388 (42%), Gaps = 59/388 (15%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           GR+     +V ++ ++GE+G+   + FK+         ++K  VA   L    +    VD
Sbjct: 222 GRSFPDGEVVGLVAKLGERGVFP-DGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVD 280

Query: 316 TINC--LLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
             +C  LL  LGR + + +  +LL +  K +  P++ T+ +L+   C+ + + EA +V++
Sbjct: 281 AASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFD 340

Query: 373 EMIDKG------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
            +  KG       +PDVV  N +++GL K+GK  D + L E MK              + 
Sbjct: 341 RLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMK--------------MG 386

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
              + N   Y CLI GF      D  ++L ++M E G  P+ +T N L+  +        
Sbjct: 387 NINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHR 446

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           AV  + EM   G K    TY  ++ ++    N     + ++EM+  GC PD   Y  LI 
Sbjct: 447 AVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLIS 506

Query: 547 GLISQDRSGEA-----------------------------------YKYLEEMLEKGMKA 571
           GL    R  +A                                   Y+ L EM E G+K 
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKP 566

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + YN   + L + G      ++ +KM
Sbjct: 567 DTITYNTLISYLGKTGDFATASKVMEKM 594



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 30/376 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A ++ + N++++ LGR R  + M  +L EM ++ +  S+ TF I +N    A+   +A
Sbjct: 276 GGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEA 335

Query: 299 VAIFELM------NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK--HRFTPNLTT 350
           + +F+ +      N    +  V   N L++ L +    ++   L +++K  +   PN  T
Sbjct: 336 LQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVT 395

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y  L+ G+ +  N   A  ++ +M ++G +P+V+  N +++GL K G+   A++ F  MK
Sbjct: 396 YNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMK 455

Query: 411 AKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMD 450
            KG   N  +YT +I  FC  N                    A VY  LI+G     RM+
Sbjct: 456 GKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMN 515

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
               ++ +++  G   D   YN LI     +K  +    +  EM  +G KP   TYN ++
Sbjct: 516 DASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLI 575

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               +TG++    KV ++MI+ G  P   +Y  +I    S+    E  K   EM      
Sbjct: 576 SYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKV 635

Query: 571 AP-VLDYNKFAADLSR 585
            P  + YN     L R
Sbjct: 636 PPNTVIYNILIDALCR 651



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 131/307 (42%), Gaps = 23/307 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  T N+++  L +  +    V    EM  KGL  +  T+   ++AF      
Sbjct: 420 NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNI 479

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
            +A+  FE M              L+  L  +    +A ++  KLK   F+ + + Y VL
Sbjct: 480 NRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVL 539

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+ K L     +  EM + G KPD + +N ++  L K G  + A K+ E M  +G 
Sbjct: 540 ISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGL 599

Query: 415 SPNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVY 453
            P+V +Y  +I  +C +                     N  +Y  LI        +D   
Sbjct: 600 RPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAI 659

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L+++M+ +   P+  TYNA++K ++ +KM  +A  +   MV    +P   T  ++ +  
Sbjct: 660 SLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWL 719

Query: 514 FQTGNYE 520
              G  E
Sbjct: 720 SAVGEIE 726


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 170/368 (46%), Gaps = 17/368 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K GF  +  T  S+++   +  +F+  VS+++ M   G + ++  +   +N     ++  
Sbjct: 142 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 201

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A+ +F  M K   +A   T N L+  L  S +    A+LL D +K +  PN+  +T L+
Sbjct: 202 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 261

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +  NL+EA  ++ EMI +   P+V  +N ++ G    G   DA  +F++M +KG  
Sbjct: 262 DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCF 321

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V +Y  +I  FCK                +R++    L  EM  +G   D  TYN LI
Sbjct: 322 PDVVTYNTLITGFCKS---------------KRVEDGMKLFCEMTYQGLVGDAFTYNTLI 366

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    + A +++  MV  G  P I TYN+++      G  E    + +++ +    
Sbjct: 367 HGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD 426

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            D  +Y ++I GL   D+  EA+     +  KG+K   + Y    + L R G     D+L
Sbjct: 427 VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 486

Query: 596 AQKMRFSG 603
            ++M+  G
Sbjct: 487 CRRMKEDG 494



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 34/369 (9%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++++ +  +F+ ++ +  +M   G+   + +F I ++ F        A+A+   M 
Sbjct: 82  FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLM 365
           K  F+  + T+  LL    +    +EA  L D +    F PN+  Y  ++ G C+ ++L 
Sbjct: 142 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  V+  M  KG + D V +N ++ GL   G+ +DA +L   M  +   PNV  +T +I
Sbjct: 202 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 261

Query: 426 WKFCKQ--------------------NAAVYTCLITGF------GNRRRMDIVYDLLKEM 459
             F K+                    N   Y  LI GF      G+ + M   +DL   M
Sbjct: 262 DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM---FDL---M 315

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             +GC PD +TYN LI      K  ++ ++++ EM   G      TYN ++  Y Q G  
Sbjct: 316 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKL 375

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            + +KV++ M+  G  PD  +Y +L+  L +  +  +A   +E++ +  M   ++ YN  
Sbjct: 376 NVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNII 435

Query: 580 AADLSRAGR 588
              L R  +
Sbjct: 436 IQGLCRTDK 444



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 15/260 (5%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +K  F P++ T   LL G+C+     EA  + + M   GF P+VV +N ++ GL K    
Sbjct: 141 MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDL 200

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           ++A+++F  M+ KG                + +A  Y  LI+G  N  R      LL++M
Sbjct: 201 NNALEVFYCMEKKGI---------------RADAVTYNTLISGLSNSGRWTDAARLLRDM 245

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            +R   P+ + + ALI     +    EA  +YKEM+R    P + TYN ++  +   G  
Sbjct: 246 VKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCL 305

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
              + ++D M+ +GC PD  +Y  LI G     R  +  K   EM  +G+      YN  
Sbjct: 306 GDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTL 365

Query: 580 AADLSRAGRSYVLDELAQKM 599
                +AG+  V  ++  +M
Sbjct: 366 IHGYCQAGKLNVAQKVFNRM 385



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 148/333 (44%), Gaps = 24/333 (7%)

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           +N V++ L + R        F+C   +K G   ++ TYN+++S L  + ++     +L +
Sbjct: 187 YNTVINGLCKNRDLNNALEVFYCM--EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRD 244

Query: 271 MGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M ++ +     F  A+ + F       +A  +++ M +      V T N L+        
Sbjct: 245 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304

Query: 330 PKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             +A+ +FD +  +   P++ TY  L+ G+C+ K + +  +++ EM  +G   D   +N 
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           ++ G  + GK + A K+F  M   G SP++ +Y I++   C                   
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 424

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              +   Y  +I G     ++   + L + +  +G  PD + Y  +I  +  + +  EA 
Sbjct: 425 MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 484

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           ++ + M   GF P+   Y+  ++ ++ + + E+
Sbjct: 485 KLCRRMKEDGFMPSERIYDETLRDHYTSLSAEL 517



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 59/319 (18%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ EM+     P +V    +L  + K+ K    I L+  M+  G S ++ S+TI+I
Sbjct: 62  DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121

Query: 426 WKFC--------------------KQNAAVYTCLITGF--GNR----------------- 446
             FC                    + +      L+ GF  GNR                 
Sbjct: 122 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFV 181

Query: 447 ----------------RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                           R ++   ++   ME++G   D +TYN LI  +       +A R+
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARL 241

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            ++MV+    P +  +  ++ ++ + GN    R ++ EMIRR   P+  +Y  LI G   
Sbjct: 242 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 301

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG----KFE 606
               G+A    + M+ KG    V+ YN       ++ R     +L  +M + G     F 
Sbjct: 302 HGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFT 361

Query: 607 VSNVLARWAETTKNRVYRK 625
            + ++  + +  K  V +K
Sbjct: 362 YNTLIHGYCQAGKLNVAQK 380



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  DA  LF  M    P P++  +T ++    K N               + DIV  L  
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMN---------------KFDIVIYLYH 103

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +ME  G   D  ++  LI           A+ +  +M++ GF+P+I T   ++  + Q  
Sbjct: 104 KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGN 163

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            ++    + D M   G  P+   Y  +I GL        A +    M +KG++A  + YN
Sbjct: 164 RFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYN 223

Query: 578 KFAADLSRAGR 588
              + LS +GR
Sbjct: 224 TLISGLSNSGR 234


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 181/386 (46%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  +S T+N+++  L R  +    V++++ M  KG    + T+ I +N      +   A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +++ + M + K + GV   N +++ L   K   +A  LF ++ ++   PN+ TY  L+  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI++   P+VV  + +++  +K GK  +A KL++ M  +   P+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+                    +MI K C  N   Y  LI GF   +R+D   +L +
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TY  LI      +  D A  ++K+MV  G  P I TY++++      G
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    V++ + R    PD  +Y ++I G+    +  + +     +  KG+K  V+ Y 
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              +   R G     D L ++M+  G
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEG 566



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 175/406 (43%), Gaps = 57/406 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G +HN  TY+ +++   R  Q    +++L +M + G    + T    +N F        A
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 170

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V++   M +  ++    T N L+  L R     EA  L D++  +   P+L TY +++ G
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNG 230

Query: 358 WCR-----------------------------------VKNLMEAGRVWNEMIDKGFKPD 382
            C+                                    KN+ +A  ++ EM +KG +P+
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV------- 435
           VV +N ++  L   G+ SDA +L   M  +  +PNV +++ +I  F K+   V       
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 436 -------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                        Y+ LI GF    R+D    + + M  + C P+ +TYN LIK     K
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             DE + +++EM + G      TY  ++  +FQ    +  + V+ +M+  G  PD  +Y+
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +L+ GL +  +   A    E +    M+  +  YN     + +AG+
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGK 516



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 161/362 (44%), Gaps = 55/362 (15%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           ++ ++S + +  +F+ ++S+ E+M   G+  ++ T+ I +N F    +   A+A+   M 
Sbjct: 84  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKM- 142

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
                                            +K  + P++ T   LL G+C    + +
Sbjct: 143 ---------------------------------MKLGYEPDIVTLNSLLNGFCHGNRISD 169

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  +  +M++ G++PD    N ++ GL +  + S+A+ L + M  KG  P++ +Y I++ 
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK+                       +Y  +I    N + ++   +L  EM+ +G  P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TYN+LI+ +       +A R+  +M+     P + T++ ++ ++ + G      K++
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 349

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           DEMI+R   PD  +Y+ LI G    DR  EA    E M+ K     V+ YN       +A
Sbjct: 350 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 409

Query: 587 GR 588
            R
Sbjct: 410 KR 411



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 176/379 (46%), Gaps = 28/379 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFEL 304
           TY  +++ L +    +  +S+L++M E+G +   +  +   ++A    K    A+ +F  
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281

Query: 305 MNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           M+    +  V T N L+    N GR      ++LL D ++ +  PN+ T++ L+  + + 
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGR--WSDASRLLSDMIERKINPNVVTFSALIDAFVKE 339

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA ++++EMI +   PD+  ++ ++ G     +  +A  +FE+M +K   PNV +Y
Sbjct: 340 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  FCK                     N   YT LI GF   R  D    + K+M  
Sbjct: 400 NTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD +TY+ L+  +      + A+ +++ + RS  +P I+TYN++++   + G  E 
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
           G  ++  +  +G  P+  +YT ++ G   +    EA     EM E+G       YN    
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579

Query: 582 DLSRAGRSYVLDELAQKMR 600
              R G      EL ++MR
Sbjct: 580 AHLRDGDKAASAELIREMR 598



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 20/245 (8%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++ +M+     P +V  + +L  + K+ K    I L E M+  G S N+ +Y+I
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  FC++                    +      L+ GF +  R+     L+ +M E G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD  T+N LI  +       EAV +   MV  G +P + TY +++    + G+ ++  
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M +    P    Y  +I  L +     +A     EM  KG++  V+ YN     L
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301

Query: 584 SRAGR 588
              GR
Sbjct: 302 CNYGR 306



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ TY +++    +AR+ +    + ++M   G+L  + T+ I ++      + + A
Sbjct: 426 GLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +FE + + K +  + T N ++E + ++   ++   LF  L  +   PN+ TYT ++ G
Sbjct: 486 LVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 545

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           +CR     EA  ++ EM ++G  PD   +N ++   L+ G ++ + +L   M++
Sbjct: 546 FCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 163/386 (42%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + +TY+++M  LGR      ++++LEEM   GL  ++ T+ I + A   A+    A
Sbjct: 230 GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDA 289

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             IF+ M+       V T   L++ L    KL K  +L         +P+  TY  L+  
Sbjct: 290 WGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDK 349

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +V +L    R WNEM   G+ PDVV + I++E L K G    A  + +VM  KG  PN
Sbjct: 350 FGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPN 409

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  MI                        K  A  Y   I  +G         D  +
Sbjct: 410 LHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFE 469

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M++RG  P     NA +  +       EA  I+ ++ + G  P   TYNM+MK Y + G
Sbjct: 470 TMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAG 529

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   ++  EMI +GC PD      LI  L    R   A+K    +    +   V+ YN
Sbjct: 530 QIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYN 589

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                L + G+     EL   M  SG
Sbjct: 590 ILLTGLGKEGKILKALELFGSMTESG 615



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 173/386 (44%), Gaps = 39/386 (10%)

Query: 198  MEAVLDEC----GINLSHNLVVDVLERFRHARRPAFRFFCW---------AGDK----PG 240
            ME +L E      I+ +  LV + + +  H   P  +  C            DK     G
Sbjct: 732  MECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLG 791

Query: 241  FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAV 299
                  +YN +M  L  +   E  + + E+M   G      T+ + ++A   +K   K  
Sbjct: 792  IHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLY 851

Query: 300  AIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             ++  M     +    T N ++  L +S  L K   L ++ +   F+P   TY  L+ G 
Sbjct: 852  DLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGL 911

Query: 359  CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
             +     +A +++ EM+D G  P+ V +NI++ G  K G+   A +LF+ M  +G  P++
Sbjct: 912  LKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDL 971

Query: 419  RSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +SYTI++   C                      +   Y  +I G G  RR+D    L  E
Sbjct: 972  KSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSE 1031

Query: 459  MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
            M+ RG  PD  TYNALI  + I    D AV++Y+E+   G +P++ TYN +++ +  +GN
Sbjct: 1032 MKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGN 1091

Query: 519  YEMGRKVWDEMIRRGCCPDDNSYTVL 544
             +    V+ +M+  GC P+  ++  L
Sbjct: 1092 KDQAFSVFKKMMVVGCSPNTETFAQL 1117



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 150/327 (45%), Gaps = 16/327 (4%)

Query: 278  SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
            ++E++   M+    +   +KA+ +FE M          T N LL+  G+SK   +   L+
Sbjct: 795  TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLY 854

Query: 338  DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
             +++ R   PN  T+ +++    +  NL +A  ++ E++   F P    +  +++GLLK 
Sbjct: 855  SEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKA 914

Query: 397  GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
            G+   A+K+FE M   G               C  N+ +Y  LI GFG    +D   +L 
Sbjct: 915  GRSEQAMKIFEEMLDYG---------------CGPNSVIYNILINGFGKSGEIDFACELF 959

Query: 457  KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            K+M + G  PD  +Y  L++ + I    DEAV+ ++E+  +G  P   +YN I+    ++
Sbjct: 960  KKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKS 1019

Query: 517  GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
               +    ++ EM  RG  PD  +Y  LI  L    +   A K  EE+   G++  V  Y
Sbjct: 1020 RRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTY 1079

Query: 577  NKFAADLSRAGRSYVLDELAQKMRFSG 603
            N      S +G       + +KM   G
Sbjct: 1080 NALIRGHSLSGNKDQAFSVFKKMMVVG 1106



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 156/331 (47%), Gaps = 18/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  TYN+M+  L +AR+ +  + +LE M   G+     ++ + ++ +  + +  KA
Sbjct: 405 GIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKA 464

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           +  FE M K      +   N  L  L  +    EA+ +F+ L K   +P+  TY +L+  
Sbjct: 465 IDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKC 524

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   + +A ++ +EMI KG +PDV+  N ++  L K G+   A K+F  +K    +P 
Sbjct: 525 YSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPT 584

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y I               L+TG G   ++    +L   M E GCPP+ +T+N+L+  
Sbjct: 585 VVTYNI---------------LLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDC 629

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      D A++++  M      P + TYN I+    + G  +     + +M ++   PD
Sbjct: 630 LSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLSPD 688

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
             +   LI G++   R  +A K + E + + 
Sbjct: 689 YVTLCTLIPGVVRHGRVEDAIKVVMEFVHQA 719



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 154/377 (40%), Gaps = 51/377 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AF +F        F H +   N M+ IL   R+ E MV + + M +K +  ++ T+    
Sbjct: 114 AFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIF 173

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
            A +      +A      M +  F     + N L+                         
Sbjct: 174 KALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIH------------------------ 209

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                 +LL G+C      EA +V+  MI +G KP +  ++ ++  L + G     + L 
Sbjct: 210 ------LLLPGFCN-----EALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLL 258

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           E MK+ G  PN+ +YTI                I   G  RR+D  + + KEM++ GC P
Sbjct: 259 EEMKSIGLRPNIYTYTI---------------CIRALGRARRIDDAWGIFKEMDDEGCGP 303

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TY  LI  +      D+A  +Y +M  S   P   TY  +M  + + G+ E  ++ W
Sbjct: 304 DVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFW 363

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +EM   G  PD  +YT+LI  L        A+  L+ M  KG+   +  YN     L +A
Sbjct: 364 NEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKA 423

Query: 587 GRSYVLDELAQKMRFSG 603
            R     EL + M   G
Sbjct: 424 RRLDEALELLENMESLG 440



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 25/248 (10%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           L+   C+ K  ++A  V+++   + G  P + ++N +++GLL       A++LFE MK+ 
Sbjct: 766 LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  PN  +Y +               L+   G  +R++ +YDL  EM  RGC P+ +T+N
Sbjct: 826 GTHPNNFTYNL---------------LLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHN 870

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            +I  +      ++A+ +Y E++   F PT  TY  ++    + G  E   K+++EM+  
Sbjct: 871 IIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDY 930

Query: 533 GCCPDDNSYTVLIGGLISQDRSGE---AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           GC P+   Y +LI G     +SGE   A +  ++M+++G++  +  Y      L   GR 
Sbjct: 931 GCGPNSVIYNILINGF---GKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGR- 986

Query: 590 YVLDELAQ 597
             +DE  Q
Sbjct: 987 --IDEAVQ 992



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 156/410 (38%), Gaps = 58/410 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G + +S TYN +M    +A Q +    +L EM  KG    +      +N    A    
Sbjct: 508 KCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVD 567

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A  +F  +   K    V T N LL  LG+  K+ K  +L     +    PN  T+  LL
Sbjct: 568 AAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLL 627

Query: 356 GG-------------WCR----------------VKNLMEAGRV-----WNEMIDKGFKP 381
                          +CR                +  L+  GR+     +   + K   P
Sbjct: 628 DCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSP 687

Query: 382 DVVAHNIMLEGLLKIGKRSDAIK--------------------LFEVMKAKGPSPNVRSY 421
           D V    ++ G+++ G+  DAIK                    L E +  +       S+
Sbjct: 688 DYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISF 747

Query: 422 T-IMIWKFCKQNAAVYTCLITGFGNRRR-MDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
             I++     Q+  V   LI     R++ +D      K  +  G  P   +YN L+  + 
Sbjct: 748 AEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLL 807

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                ++A+ ++++M  +G  P   TYN+++ ++ ++        ++ EM  RGC P+  
Sbjct: 808 GSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAI 867

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           ++ ++I  L+  +   +A     E++          Y      L +AGRS
Sbjct: 868 THNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRS 917


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 184/391 (47%), Gaps = 20/391 (5%)

Query: 204 ECG-INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG-FAHNSRTYNSMMSILGRARQF 261
           EC  + L+  +   +L R     + A  FF WA  + G ++H     N M+ +LG+ RQ 
Sbjct: 79  ECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACNRMVDLLGKMRQI 138

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           + M  +L EM  +GL++++T   ++   AAA+  + A+ +F+ +     +   +T+N LL
Sbjct: 139 DRMWDLLSEMHCRGLVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLGLERNTETMNVLL 198

Query: 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           + L + +  + A+ +F  L     P+  T+ + + GWC V+ + EA     EM ++GF P
Sbjct: 199 DALCKERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKNRGFPP 258

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
            V+ +  +LE   K        ++ + M ++G  PNV +YT+               ++T
Sbjct: 259 IVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTM---------------IMT 303

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK-EMVRSGFK 500
                 R +    +   M+  GC PD L YNALI L+       EA ++++ EM R+   
Sbjct: 304 SLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVP 363

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS-QDRSGEAYK 559
             + TYN ++    Q G  +    V  EM  + C PD  +Y  L+  L   + ++G  + 
Sbjct: 364 RNVATYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTGAIHH 423

Query: 560 YLEEMLEK-GMKAPVLDYNKFAADLSRAGRS 589
            L E+ ++ G+   +  Y      L R G +
Sbjct: 424 LLSELRDRNGLGLDLDTYTLLIHGLCRVGET 454



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 16/188 (8%)

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I LF+ ++  G   N  +  +++   CK+               R++++  ++   M   
Sbjct: 176 ILLFDQLEDLGLERNTETMNVLLDALCKE---------------RKVELAREVFV-MLSP 219

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
              PD  T+N  +      +  DEA+   +EM   GF P + TY  ++++Y +  N+   
Sbjct: 220 HIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRV 279

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            ++ D M  +GC P+  +YT+++  L   +R  EA    + M   G K   L YN     
Sbjct: 280 YEILDSMSSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINL 339

Query: 583 LSRAGRSY 590
           L RAG  +
Sbjct: 340 LGRAGHLF 347



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 42/339 (12%)

Query: 190 ELFSLDRNMEAVLDECGINLSHNLVVDVL--ERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           E   L+RN E +          N+++D L  ER     R  F         P  A ++ T
Sbjct: 183 EDLGLERNTETM----------NVLLDALCKERKVELAREVFVML-----SPHIAPDAYT 227

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           +N  +      R+ +  +  +EEM  +G   +  T+   + A+   +  ++   I + M+
Sbjct: 228 FNIFVHGWCSVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMS 287

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
                  V T   ++ +L + +  +EA  + D++K     P+   Y  L+    R  +L 
Sbjct: 288 SQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLF 347

Query: 366 EAGRVWNEMIDKGFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           EA +V+   + +   P +V  +N M+  L + G+  DA+ + + M+A+   P++++Y  +
Sbjct: 348 EANQVFRVEMPRNVVPRNVATYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPL 407

Query: 425 IWKFCK---QNAAV-------------------YTCLITGFGNRRRMDIVYDLLKEMEER 462
           +        Q  A+                   YT LI G       D  Y L  EM   
Sbjct: 408 LRLLFGRRGQTGAIHHLLSELRDRNGLGLDLDTYTLLIHGLCRVGETDWAYQLYDEMVGS 467

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
              P   T   L+   + Q M     RI  +++  G  P
Sbjct: 468 EIVPRPKTCELLLSETQRQNMEVYVERIQNDVIFFGLSP 506



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 1/149 (0%)

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  ++E+ G   +  T N L+  +  ++  + A  ++  M+     P  +T+N+ +  + 
Sbjct: 178 LFDQLEDLGLERNTETMNVLLDALCKERKVELAREVFV-MLSPHIAPDAYTFNIFVHGWC 236

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
                +      +EM  RG  P   +YT ++     Q      Y+ L+ M  +G    V+
Sbjct: 237 SVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVI 296

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y      L++  R      ++ +M+ SG
Sbjct: 297 TYTMIMTSLTKCERFEEALSVSDRMKSSG 325


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 26/359 (7%)

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAA 292
           WA    GF  +S T   ++    R  +F  +  +   M E G   +M  +   ++     
Sbjct: 208 WA---QGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCER 264

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTT 350
              K+A  + E M     K  V T   L++ L +    + A  LF KL     + PN+ T
Sbjct: 265 GYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHT 324

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           YTV++GG+C+   L  A  +   M+++G  P+   +  ++ G  K G    A +L   MK
Sbjct: 325 YTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMK 384

Query: 411 AKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMD 450
            +G  PN+ +Y  +I  FCK+                    +   YT LIT    +  + 
Sbjct: 385 LEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHIT 444

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              DL K+M E+ C PD  TY  +I +   Q+  +++ +++ + +  G  PT  TY  ++
Sbjct: 445 CALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMI 504

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             Y + G      KV++ M++ GC PD  +Y  LI  L  + R  EA    E ML+K +
Sbjct: 505 AGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHL 563



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 16/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G +PD  +   ++ G  + G+  +A  L   M A+G   +  + T+++  FC+Q      
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQG----- 230

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                     R   V DL + M E G PP+ + Y+A I  +  +    +A  + +EMV  
Sbjct: 231 ----------RFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGK 280

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGE 556
           G KP ++T+  ++    + G  E   +++ ++++     P+ ++YTV+IGG   + +   
Sbjct: 281 GLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLAR 340

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A   L  M+E+G+      Y        + G      EL  KM+  G
Sbjct: 341 AEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEG 387



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 53/291 (18%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  ++  L+ G CR     EA  +   M  +GF  D     +++    + G+  +   L
Sbjct: 179 PDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDL 238

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G  PN+ +Y+   W             I G   R  +   + +L+EM  +G  
Sbjct: 239 FRRMSEMGTPPNMVNYSA--W-------------IDGLCERGYVKQAFHVLEEMVGKGLK 283

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGR 523
           P+  T+ +LI  L KI  M + A R++ ++V+S  +KP +HTY +++  Y + G      
Sbjct: 284 PNVYTHTSLIDGLCKIGWM-ERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAE 342

Query: 524 KVWDEMIRRGCCPDDNSYTVLI-----------------------------------GGL 548
            +   M+ +G  P+ N+YT LI                                   GG 
Sbjct: 343 MLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGF 402

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + +  EAYK L     +G+    + Y     +  + G      +L ++M
Sbjct: 403 CKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQM 453



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 20/295 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N  TYN+++    +  + +    +L     +GL L   T+ I +           A
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCA 446

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           + +F+ M +      + T   ++    + +  +++Q LFDK L     P   TYT ++ G
Sbjct: 447 LDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAG 506

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+  L  A +V+  M+  G  PD + +  ++  L K  +  +A  LFE M  K   P 
Sbjct: 507 YCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPC 566

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +   + +++C+               R ++ I    L  +++R       T +AL++ 
Sbjct: 567 DVTRVTLAYEYCR---------------RDKITIAVSFLDRLDKR---QQAHTADALVRK 608

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           +      D A    K ++   +     TY   + S +++  Y +  ++ +++ +R
Sbjct: 609 LSTVGNLDAASLFLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKISKR 663


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 190/414 (45%), Gaps = 33/414 (7%)

Query: 200 AVLDE-----CGINL-SHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNS 250
           AVLDE     C  N+ ++N++++ +    R   AR    R F +     G   ++ +Y +
Sbjct: 198 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSY-----GCQPDTVSYTT 252

Query: 251 MMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           ++  L  +++++ +  +  EM EK  +  E TF + +  F      ++A+ + + M +++
Sbjct: 253 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE 312

Query: 310 FKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
                   N ++ ++ +     +A + L +   +   P+  +YT +L G CR +   +A 
Sbjct: 313 CATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAK 372

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
            +  EM+     P+ V  N  +  L + G    AI L E M+  G +  V +Y  ++  F
Sbjct: 373 ELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGF 432

Query: 429 C-----------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           C                 K N   YT L+TG  N  R+D   +L+ EM  R CPP+ +T+
Sbjct: 433 CVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTF 492

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N L+     +   DEA+ + ++M+  G  P + TYN +     +  + E   ++   ++ 
Sbjct: 493 NVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVS 552

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +G  PD  +++ +IG L  +DR  EA +      + GM+   L YNK    L +
Sbjct: 553 KGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCK 606



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 15/262 (5%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           R ++     LL D L+    PN+ TYTVLL   C+     +A  V +EM  KG  P++V 
Sbjct: 155 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVT 214

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N+++ G+ + G+  DA  L   + + G  P+  SYT ++   C                
Sbjct: 215 YNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCAS-------------- 260

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            +R D V +L  EM E+ C P+ +T++ LI+      M + A+++ ++M           
Sbjct: 261 -KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTL 319

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            N+++ S  + G  +   K  + M   GC PD  SYT ++ GL   +R  +A + L+EM+
Sbjct: 320 CNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV 379

Query: 566 EKGMKAPVLDYNKFAADLSRAG 587
                   + +N F   L + G
Sbjct: 380 RNNCPPNEVTFNTFICILCQKG 401



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY  ++  + +   FE  +++L+EM  KG   ++ T+ + +N          A
Sbjct: 172 GCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 231

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   +  Y  +    +   LL+ L  SK   + + LF ++  +   PN  T+ +L+  
Sbjct: 232 RDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 291

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR   +  A +V  +M +     +    NI++  + K G+  DA K    M + G +P+
Sbjct: 292 FCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPD 351

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             SYT ++   C+                 R +   +LLKEM    CPP+ +T+N  I +
Sbjct: 352 TISYTTVLKGLCRA---------------ERWNDAKELLKEMVRNNCPPNEVTFNTFICI 396

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  + + ++A+ + ++M   G    + TYN ++  +   G+ +   +++  M    C P+
Sbjct: 397 LCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPN 453

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT L+ GL + +R   A + + EML +     V+ +N       + G      EL +
Sbjct: 454 TITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVE 513

Query: 598 KMRFSG 603
           +M   G
Sbjct: 514 QMMEHG 519



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 120/254 (47%), Gaps = 15/254 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TYT L+   C    + +A  + ++M+ +G +P+VV + ++LE + K      A+ +
Sbjct: 140 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAV 199

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M+AKG +PN+ +Y ++I   C++                R+D   DLL  +   GC 
Sbjct: 200 LDEMRAKGCTPNIVTYNVIINGMCREG---------------RVDDARDLLNRLFSYGCQ 244

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++Y  L+K +   K  D+   ++ EM+     P   T++M+++ + + G  E   +V
Sbjct: 245 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M    C  +     ++I  +  Q R  +A+K+L  M   G     + Y      L R
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364

Query: 586 AGRSYVLDELAQKM 599
           A R     EL ++M
Sbjct: 365 AERWNDAKELLKEM 378



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 151/346 (43%), Gaps = 25/346 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AF+F    G   G   ++ +Y +++  L RA ++     +L+EM        E TF   +
Sbjct: 336 AFKFLNNMGSY-GCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFI 394

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                    ++A+ + E M ++    GV T N L+           A  LF  +  +  P
Sbjct: 395 CILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--P 452

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  TYT LL G C  + L  A  +  EM+ +   P+VV  N+++    + G   +AI+L 
Sbjct: 453 NTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELV 512

Query: 407 EVMKAKGPSPNVRSYTIM---IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           E M   G +PN+ +Y  +   I K C    A+                  +LL  +  +G
Sbjct: 513 EQMMEHGCTPNLITYNTLFDGITKDCSSEDAL------------------ELLHGLVSKG 554

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +T++++I ++  +   +EA++++      G +P    YN I+    +    +   
Sbjct: 555 VSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAI 614

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                M+  GC P++++Y +LI GL  +    EA   L  +  +G+
Sbjct: 615 DFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 17/239 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------- 430
           G  PDV     ++  L + G+ SDA ++    +  G   +V +Y  ++  +C+       
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      +A  YT LI    +R R+     LL +M  RGC P+ +TY  L++ M  
Sbjct: 130 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
               ++A+ +  EM   G  P I TYN+I+    + G  +  R + + +   GC PD  S
Sbjct: 190 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVS 249

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           YT L+ GL +  R  +  +   EM+EK      + ++       R G      ++ Q+M
Sbjct: 250 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQM 308


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 183/416 (43%), Gaps = 54/416 (12%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN------- 287
            G +PG+      YN ++  +    +  ++  +  E+ EK    M    + +N       
Sbjct: 398 CGCQPGYV----VYNILIGGICGNEKLPSLDVL--ELAEKAYGEMLDAHVVLNKVNVSNL 451

Query: 288 --AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRF 344
                 A + +KA +I   M    F     T + ++  L  +     A LLF+++K +  
Sbjct: 452 ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHV 511

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ TYT+L+  +C+V  L +A + ++EM+  G  P+VV +  ++   LK  K S A +
Sbjct: 512 VPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANE 571

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------------------- 431
           LFE+M ++G  PNV +YT +I   CK                                  
Sbjct: 572 LFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNI 631

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEA 487
              N   Y  L+ G     ++    DLL  M   GC P+ + Y+ALI    K+ K+ DEA
Sbjct: 632 RDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKL-DEA 690

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             ++ +M   G+ P ++TY+ ++   F+    ++  KV   M+   C P+   YT +I G
Sbjct: 691 QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDG 750

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L    ++ EAY+ +  M EKG    V+ Y        +AG+     EL ++M   G
Sbjct: 751 LCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 39/402 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +  TYN+++ +   A + +T   +  EM + G  +   T    ++    A   ++A
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA 286

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +A+ E   K +FK        ++  L  + L +EA     +++     PN+ TY +LL G
Sbjct: 287 LALIE---KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCG 343

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R + L    R+ + MI +G  P     N ++    + G  S A KL + M   G  P 
Sbjct: 344 CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPG 403

Query: 418 VRSYTIMIWKFC-----------------------------KQNAAVYTCLITGFGNRRR 448
              Y I+I   C                             K N +     + G G   +
Sbjct: 404 YVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAG---K 460

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
            +  Y +++EM  +G  PD  TY+ +I L+      D A  +++EM  +   P + TY +
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++ S+ + G  +  RK +DEM+R GC P+  +YT LI   +   +   A +  E ML +G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
               V+ Y        ++G+     ++  +MR  G  ++ +V
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKACQIYARMR--GNADIPDV 620



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 42/401 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ ++ +L  A + +    + EEM    ++  + T+ I +++F      ++A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F+ M +      V T   L+    +++    A  LF+  L     PN+ TYT L+ G
Sbjct: 535 RKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDG 594

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
            C+   + +A +++  M        +D  FK        P++  +  +++GL K  K  +
Sbjct: 595 HCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKE 654

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A  L +VM  +G  PN   Y  +I  FCK                     N   Y+ LI 
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
                +R+D+   +L  M E  C P+ + Y  +I  L K+ K  DEA R+   M   G  
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK-TDEAYRLMSMMEEKGCH 773

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++  + + G  +   ++  +M  +GC P+  +Y VLI    +     +A++ 
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQL 833

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAG--RSYVLDELAQKM 599
           L+EM +      +  Y K     +R       +LDE+A+ +
Sbjct: 834 LDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENV 874



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 172/430 (40%), Gaps = 108/430 (25%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G A N  TY +++    +AR+  +   + E M  +G + ++ T+   ++    + + +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 297 KAVAIFELMNK----------YKFKAG------VDTINCLLENLGRSKLPKEAQLLFDKL 340
           KA  I+  M            +K   G      + T   L++ L ++   KEA+ L D +
Sbjct: 603 KACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVM 662

Query: 341 K-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 PN   Y  L+ G+C+V  L EA  V+ +M ++G+ P+V  ++ +++ L K  + 
Sbjct: 663 SVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRL 722

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A+K+   M     +PNV  YT MI   CK                     N   YT +
Sbjct: 723 DLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAM 782

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM----- 494
           I GFG   ++D   +L+++M  +GC P+ +TY  LI       + D+A ++  EM     
Sbjct: 783 IDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYW 842

Query: 495 ---------VRSGFK-------------------PTIHTYNMIMKSYFQTGNYEMGRKV- 525
                    V  GF                    P I  Y +++ S+ + G  E+  ++ 
Sbjct: 843 PKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELH 902

Query: 526 ------------------------------------WDEMIRRGCCPDDNSYTVLIGGLI 549
                                               + +MI+RG  P+ + +  L+ GLI
Sbjct: 903 KEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLI 962

Query: 550 SQDRSGEAYK 559
             +R  EA +
Sbjct: 963 RINRWEEALQ 972



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 150/387 (38%), Gaps = 60/387 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+  LVVDVL   ++      +FF WAG + G+ H    Y++++ +LG           L
Sbjct: 127 LNETLVVDVLSLVKNPEL-GVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFL 185

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI-NCLLENLGRS 327
            E+ +                    E K+ +   +L+N    K   + + N  LE LGR 
Sbjct: 186 REIRD--------------------EDKEILG--KLLNVLIRKCCRNGLWNVALEELGRL 223

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           K               + P+  TY  L+  +     L  A  V  EM D GF  D     
Sbjct: 224 K------------DLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLG 271

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
             +  L K G+  +A+ L E  +                   K +  +YT +I+G     
Sbjct: 272 CFVHLLCKAGRWREALALIEKEEF------------------KLDTVIYTQMISGLCEAS 313

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
             +   D L  M    C P+ +TY  L+     ++      RI   M+  G  P+   +N
Sbjct: 314 LFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFN 373

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG------LISQDRSGEAYKYL 561
            ++ +Y ++G+Y    K+  +M   GC P    Y +LIGG      L S D    A K  
Sbjct: 374 SLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAY 433

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGR 588
            EML+  +    ++ +  A  L  AG+
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGK 460



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 113/257 (43%), Gaps = 54/257 (21%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY +M+   G+A + +  + ++ +MG KG   +  T+++ +N   AA   
Sbjct: 768 EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAA--- 824

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVL 354
                                            L  +A  L D++K  + P ++  Y  +
Sbjct: 825 --------------------------------GLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+ R + ++  G + +E+ +    P + A+ I+++   K G+   A++L + M +   
Sbjct: 853 IEGFNR-EFIISLG-LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSS--- 907

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                SY+         +  +Y+ LI       ++D  ++L  +M +RG  P+   +  L
Sbjct: 908 ---CTSYS-------AADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYL 957

Query: 475 IK-LMKIQKMPDEAVRI 490
           +K L++I +  +EA+++
Sbjct: 958 VKGLIRINRW-EEALQL 973


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 169/370 (45%), Gaps = 17/370 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKER 295
           +K     N   Y++++  L +       + +  ++GE+G LL   T+   ++   +    
Sbjct: 187 EKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRW 246

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVL 354
           ++   +   M +        T N L++ L +     EAQ +   +  R   P++ TY  L
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C  +N+ EA  ++N M+ +G +PDV+ +N++++G  K     +A+ LF+ +  K  
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P + SY                 LI G  N  R+  V  LL EM     PPD +TYN L
Sbjct: 367 VPTIASYN---------------SLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL 411

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +  +    EA+ +   M++ G KP I TYN +M  Y    N  + + +++ M++ G 
Sbjct: 412 IDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGL 471

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  +Y VLI G    +   EA    +EM  K +   +  YN     L   GR   + E
Sbjct: 472 EPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQE 531

Query: 595 LAQKMRFSGK 604
           L  +M  SG+
Sbjct: 532 LLDEMCDSGQ 541



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 17/348 (4%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFA 290
            C    + G   ++ TYNS++       +++ +  +L +M  + +   + TF I ++A  
Sbjct: 217 LCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALC 276

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
                 +A  +  +M+K   K  + T N L+E     +   EA+ LF+++  R   P++ 
Sbjct: 277 KEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVL 336

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            Y VL+ G+C+ K + EA  ++ E+ +K   P + ++N +++GL   G+ S   KL + M
Sbjct: 337 NYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                 P+V +Y I+I   CK+                R+     +L  M ++G  P+ +
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEG---------------RILEALGVLVMMMKKGVKPNIV 441

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TYNA++    ++   + A  I+  MV+SG +P I  YN+++  Y +T   +    ++ EM
Sbjct: 442 TYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEM 501

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   PD  SY  LI GL +  R     + L+EM + G    V+ YN
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYN 549



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 163/377 (43%), Gaps = 62/377 (16%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N ++  L   GR  + + +++M+ + GEK    + T+   M  + + +   +A  +F 
Sbjct: 267 TFNILIDALCKEGRILEAQGVLAMMSKRGEKP--DIVTYNALMEGYCSRENVHEARELFN 324

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
            M K   +  V   N L++   ++K+  EA +LF +L ++   P + +Y  L+ G C   
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSG 384

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            +    ++ +EM      PDVV +NI+++ L K G+  +A+ +  +M  KG  PN+ +Y 
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYN 444

Query: 423 IMIWKFC-KQNAAV-------------------YTCLITGFGNRRRMDIVYDLLKEMEER 462
            M+  +C + N  V                   Y  LI G+     +D    L KEM  +
Sbjct: 445 AMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK 504

Query: 463 GCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE- 520
              PD  +YN+LI  L  + ++P     +  EM  SG  P + TYN+++ ++ +T  ++ 
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIP-HVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563

Query: 521 ---------------------------------MGRKVWDEMIRRGCCPDDNSYTVLIGG 547
                                            M       ++  GC P+  +YT+LI  
Sbjct: 564 AISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINA 623

Query: 548 LISQDRSGEAYKYLEEM 564
           L      GEA   L +M
Sbjct: 624 LCKDGSFGEAMLLLSKM 640



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 21/269 (7%)

Query: 332 EAQLLFDKLKHRFTPNLTT-YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +A   F+++   F P  T+ +  LLG   R+ +   A  ++ ++  KG  P +    I++
Sbjct: 38  DAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILI 97

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------- 431
                    + A  L   +   G  PN+ ++  +I  FC                     
Sbjct: 98  NCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYL 157

Query: 432 -NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            +   Y  LI G     ++     LL+EME+    P+ + Y+ALI  +       +A+ +
Sbjct: 158 FDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGL 217

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             ++   G      TYN ++      G ++   ++  +M+R    PDD ++ +LI  L  
Sbjct: 218 CSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCK 277

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           + R  EA   L  M ++G K  ++ YN  
Sbjct: 278 EGRILEAQGVLAMMSKRGEKPDIVTYNAL 306



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 15/241 (6%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR +N+ +A   +N M+     P     + +L  ++++G    AI LF  +++KG SP++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            ++TI+I  +  Q+   +                + LL  + + G  P+ +T+N +I   
Sbjct: 91  ATFTILINCYFHQSHTAFA---------------FSLLATILKSGYQPNLVTFNTIINGF 135

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            I  M  +A+   + ++  G+     TY  ++    + G  +    +  EM +    P+ 
Sbjct: 136 CINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNL 195

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
             Y+ LI GL       +A     ++ E+G+    + YN         GR   + +L  K
Sbjct: 196 VMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTK 255

Query: 599 M 599
           M
Sbjct: 256 M 256



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +YNS++  L    +   +  +L+EM + G    + T+ I ++AF   +   KA+++F  +
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----TPNLTTYTVLLGGWCRV 361
            +        T + +++NL + +  K A+   D LKH      +PN+ TYT+L+   C+ 
Sbjct: 572 VE-GIWPDFYTNHAIVDNLCKGEKLKMAE---DALKHLLMHGCSPNVQTYTILINALCKD 627

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            +  EA  + ++M D    PD +   I++  LL+  +   A KL E M A+G
Sbjct: 628 GSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 1/138 (0%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  +    L  ++++   P  A+ ++ ++   G  P+I T+ +++  YF   +      
Sbjct: 53  PPTSVFDKLLGAIVRMGHYP-TAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFS 111

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +   +++ G  P+  ++  +I G        +A  + + +L +G       Y      LS
Sbjct: 112 LLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLS 171

Query: 585 RAGRSYVLDELAQKMRFS 602
           + G+      L Q+M  S
Sbjct: 172 KNGQIKAALHLLQEMEKS 189


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 169/349 (48%), Gaps = 6/349 (1%)

Query: 260 QFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +FE   +++ EM  KG +    T+   +     A + +KA  +F+ M +      V T  
Sbjct: 102 KFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYT 161

Query: 319 CLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            LL+   +  L ++A+  FD+++     PN+ TYT L+  + + + L  A  ++  M+  
Sbjct: 162 TLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSN 221

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIMIWKFCKQ-NAAV 435
           G  P++V +  +++G  K G+   A +++  MK  K   P+V  Y  ++    K+ N   
Sbjct: 222 GCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVT 281

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEM 494
           Y  L+ G     ++    DLL+ M   GC P+ + Y+ALI    K+ K+ DEA  ++ +M
Sbjct: 282 YGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKL-DEAQEVFTKM 340

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +  G  P ++TY+ ++   F+    ++  KV  +M+   C P+   YT ++ GL    ++
Sbjct: 341 LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKT 400

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EAY+ +  M EKG    V+ Y        +AGR     EL Q M   G
Sbjct: 401 DEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKG 449



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 158/365 (43%), Gaps = 41/365 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  +S TY+ ++  L  A + E    + +EM   G+   + T+   ++ F      ++A
Sbjct: 117 GFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQA 176

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F+ M +      V T   L+    +++    A  +F+  L +   PN+ TYT L+ G
Sbjct: 177 RNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDG 236

Query: 358 WCRVKNLMEAGRVWNEM---------IDKGFK--------PDVVAHNIMLEGLLKIGKRS 400
            C+     +A +++  M         +D  F+        P+VV +  +++GL K  K  
Sbjct: 237 HCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVK 296

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLI 440
           +A  L E M  +G  PN   Y  +I  FCK                     N   Y+ LI
Sbjct: 297 EARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLI 356

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF 499
                 +R+D+   +L +M E  C P+ + Y  ++  L K+ K  DEA R+   M   G 
Sbjct: 357 DKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGK-TDEAYRLMLMMEEKGC 415

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY  ++  + + G  +   ++   M  +GC P+  +Y VLI    +     +A+K
Sbjct: 416 YPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHK 475

Query: 560 YLEEM 564
            LEEM
Sbjct: 476 LLEEM 480



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 154/364 (42%), Gaps = 41/364 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A N  TY +++    + R+      + E M   G + ++ T+   ++    A E +KA
Sbjct: 187 GCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246

Query: 299 VAIFELMNKYKF-----------------KAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
             I+  M   K                  +  V T   L++ L ++   KEA+ L + + 
Sbjct: 247 CQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMS 306

Query: 342 -HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
                PN   Y  L+ G+C+V  L EA  V+ +M+  G  P+V  ++ +++ L K  +  
Sbjct: 307 LEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLD 366

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLI 440
            A+K+   M     +PNV  YT M+   CK                     N   YT +I
Sbjct: 367 LALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMI 426

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            GFG   R+D   +LL+ M  +GC P+ +TY  LI       + D+A ++ +EM ++ + 
Sbjct: 427 DGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWP 486

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
             I  Y  +++ +       +G  +  E+   G  P    Y +LI   I   R   A + 
Sbjct: 487 KHIGMYRKVIEGFSHEFVASLG--LLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALEL 544

Query: 561 LEEM 564
            EE+
Sbjct: 545 HEEL 548



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 127/268 (47%), Gaps = 16/268 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+   +  L+  +CR  +   A ++  +M+  G++P  V +NI++ G+      ++ +  
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICS----TEDLPS 64

Query: 406 FEVMKAKGPSPNVRSYTIMI---WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            EV+         R+Y  M+       K N   +T  +   G   + +  Y++++EM  +
Sbjct: 65  MEVIGLAE-----RAYNEMLEMGVVLNKVNVCNFTRCLCCIG---KFEKAYNVIREMMSK 116

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD  TY+ +I  +      ++A ++++EM R+G  P ++TY  ++  + + G  E  
Sbjct: 117 GFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQA 176

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R  +DEM + GC P+  +YT LI   +   +   A +  E ML  G    ++ Y      
Sbjct: 177 RNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDG 236

Query: 583 LSRAGRSYVLDELAQKMRFSGKFEVSNV 610
             +AG +    ++  +M+ + K ++ +V
Sbjct: 237 HCKAGETEKACQIYARMK-NDKVDIPDV 263



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 78/323 (24%)

Query: 344 FTPNLTTYTVLLGGWCRVKNL----------------MEAGRVWN--------------- 372
           + P    Y +L+GG C  ++L                +E G V N               
Sbjct: 42  YQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIG 101

Query: 373 ----------EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
                     EM+ KGF PD   ++ ++  L    K   A +LF+ MK  G +P+V +YT
Sbjct: 102 KFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYT 161

Query: 423 IMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            ++ +FCK                     N   YT LI  +   R++    ++ + M   
Sbjct: 162 TLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSN 221

Query: 463 GCPPDGLTYNALI----------------KLMKIQKMPDEAVRIYKEMVRSGFK-PTIHT 505
           GC P+ +TY ALI                  MK  K+    V IY  +V S  K P + T
Sbjct: 222 GCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVT 281

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  ++    +    +  R + + M   GC P+   Y  LI G     +  EA +   +ML
Sbjct: 282 YGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKML 341

Query: 566 EKGMKAPVLDYNKFAADLSRAGR 588
             G    V  Y+     L +  R
Sbjct: 342 GHGCSPNVYTYSSLIDKLFKDKR 364



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 58/344 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIF 302
           N  TY +++  L +A + +    +LE M  +G    +    A+ + F    +  +A  +F
Sbjct: 278 NVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVF 337

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
             M  +     V T + L++ L + K L    ++L   L++   PN+  YT ++ G C+V
Sbjct: 338 TKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKV 397

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA R+   M +KG  P+VV +  M++G  K G+    ++L ++M +KG +PN  +Y
Sbjct: 398 GKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITY 457

Query: 422 TIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            ++I   C                     ++  +Y  +I GF +     +   LL E+ E
Sbjct: 458 RVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASL--GLLAELSE 515

Query: 462 RGCPP---------DGL-------------------------TYNALIKLMKIQKMPDEA 487
            G  P         D                           TY +LI+ + +    D+A
Sbjct: 516 DGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVSLIESLTLACKVDKA 575

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            ++Y +M R GF P +     ++K   + G +E   ++ D + +
Sbjct: 576 FKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSICQ 619



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 6/171 (3%)

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQ 481
           +MI + C  +  ++  L+  +         Y LLK+M   G  P  + YN LI  +   +
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTE 60

Query: 482 KMPDEAV-----RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +P   V     R Y EM+  G            +     G +E    V  EM+ +G  P
Sbjct: 61  DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIP 120

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           D ++Y+ +IG L +  +  +A++  +EM   G+   V  Y        + G
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVG 171



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG------ 547
           M+  G  P+   +N ++ +Y ++G+Y    K+  +M+  G  P    Y +LIGG      
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 548 LISQDRSGEAYKYLEEMLEKGM---KAPVLDYNKFAADLSRAGRSY-VLDELAQKMRFSG 603
           L S +  G A +   EMLE G+   K  V ++ +    + +  ++Y V+ E+  K     
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 604 KFEVSNVLARWAETTK 619
               S V+      +K
Sbjct: 122 SSTYSKVIGYLCNASK 137


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 162/393 (41%), Gaps = 54/393 (13%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           NS++  L R+ Q +    +LE M   G+ L+     + + ++ A    +    I   M  
Sbjct: 223 NSLLKALLRSHQLDLAWDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKN 282

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH------------------------- 342
           Y  KA V     +++ L +    K A  L  K+ H                         
Sbjct: 283 YGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDK 342

Query: 343 --------RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
                      PN+  Y+  +   C+  N++EA + + EM + G  PD   + I++ G  
Sbjct: 343 AINLLNFFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYC 402

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           K+G  + A +    M   G +P+V +YT++I   CK                     +  
Sbjct: 403 KVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVV 462

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            + CLI GFG +  +   ++LL  M   G  PD +TYNALI  +  +  P+EA  I  E+
Sbjct: 463 TFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHEL 522

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +R G  P + T+  ++  + + GN+E    VW  M  R   PD  + + L+ G     R 
Sbjct: 523 IRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRM 582

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            EA     +ML+ G+K  ++ YN        AG
Sbjct: 583 DEANALFLKMLDAGLKPDLVLYNNLIHGFCSAG 615



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 15/255 (5%)

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           K  Q L + LK   TP++TTYT+L+   C+  ++  A  +   M+ +G  PDVV  N ++
Sbjct: 409 KAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLI 468

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
           +G  K G    A +L ++M++ G SP+  +Y          NA +++ +  G+ N  +  
Sbjct: 469 DGFGKKGYLQKAFELLDIMRSAGMSPDTVTY----------NALIHSLIARGYPNEAK-- 516

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              D+L E+  RG  PD +T+  +I     +   +EA  ++  M     KP + T + ++
Sbjct: 517 ---DILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALL 573

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             Y +    +    ++ +M+  G  PD   Y  LI G  S      A   +  M++ G  
Sbjct: 574 NGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFL 633

Query: 571 APVLDYNKFAADLSR 585
             +  +  FA    +
Sbjct: 634 PNITTHRAFALGFEK 648



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 17/241 (7%)

Query: 268 LEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           L EM + G+  S+ T+ + +NA   + +   A  + + M        V T NCL++  G+
Sbjct: 414 LGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGK 473

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
               ++A  L D ++    +P+  TY  L+          EA  + +E+I +G  PDV+ 
Sbjct: 474 KGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMT 533

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
              +++G  K G   +A  ++  M  +   P+V + + ++  +C+               
Sbjct: 534 FTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRA-------------- 579

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            RRMD    L  +M + G  PD + YN LI         + A  +   M+  GF P I T
Sbjct: 580 -RRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITT 638

Query: 506 Y 506
           +
Sbjct: 639 H 639



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 37/231 (16%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TY  +++   ++        +L+ M  +GL+  + TF   ++ F      +
Sbjct: 419 KFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQ 478

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--------FT--- 345
           KA  + ++M          T N L+ +L     P EA+ +  +L  R        FT   
Sbjct: 479 KAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVI 538

Query: 346 -------------------------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
                                    P++ T + LL G+CR + + EA  ++ +M+D G K
Sbjct: 539 DGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLK 598

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
           PD+V +N ++ G    G  + A  L  +M   G  PN+ ++      F K+
Sbjct: 599 PDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRAFALGFEKK 649



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 94/257 (36%), Gaps = 53/257 (20%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N +  ++ +  +C   N+    ++  EM + G K DV+A+ I+++ L KI     A  L 
Sbjct: 253 NASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLL 312

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             M   G S +  S + +I  +CK+                R D   +LL     R    
Sbjct: 313 FKMIHCGISVDSVSVSSVIDGYCKKG---------------RSDKAINLLNFFNVR---- 353

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
                                             P I  Y+  M    + GN     K +
Sbjct: 354 ----------------------------------PNIFVYSSFMTKLCKDGNMLEASKTF 379

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            EM   G  PD   YT++IGG        +A++YL EML+ G+   V  Y        ++
Sbjct: 380 QEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKS 439

Query: 587 GRSYVLDELAQKMRFSG 603
           G   + + L Q+M   G
Sbjct: 440 GDMAMAEYLLQRMMLEG 456


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 194/465 (41%), Gaps = 60/465 (12%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
           I+ VC+++ E      ++E  L E  +N +  LV+ VL R +     A  +F WA     
Sbjct: 68  IDSVCQIL-ETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNN-AVNYFRWAERLTD 125

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            AH    YNS++ ++ R R+F  +  +LEEM   G   S  T    + +F  +++ ++A 
Sbjct: 126 RAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAF 185

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
              + M K KF+        L+  L  S+       LF +++   +  N+  +T L+  +
Sbjct: 186 TFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVF 245

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            R   +  A  + +EM     +PDVV +N+ ++   K GK   A K F  MKA G   + 
Sbjct: 246 AREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDD 305

Query: 419 RSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT MI   CK +                    A  Y  +I G+G   + +  Y LL+ 
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
              +GC P  ++YN ++  +  +   DEA++ ++EM +    P + TYN+++    + G 
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGK 424

Query: 519 YEMGRKVWDEMIRRG-----------------------------------CCPDDNSYTV 543
            E    V D M   G                                   C PD  +Y  
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCS 484

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           LI GL    R  EAYK  E+ML+       + Y     +  + GR
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 188/448 (41%), Gaps = 91/448 (20%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +YN ++S LGR  Q +  +   EEM +  + ++ T+ I ++    A + + A+ + + M 
Sbjct: 377 SYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK 436

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR----- 360
                  V T+N +++ L +++   +A  +F+ L H+   P+  TY  L+ G  R     
Sbjct: 437 DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVD 496

Query: 361 ------------------------VKNLMEAGR------VWNEMIDKGFKPDVVAHNIML 390
                                   ++N  + GR      ++NEM+  G  PD++  N  +
Sbjct: 497 EAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYM 556

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA---------------- 434
           + + K G+      LF+ +K  G  P+ RSYTI+I    K   A                
Sbjct: 557 DCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCV 616

Query: 435 ----VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMP----- 484
                Y  +I GF    +++  Y LL+EM+ +G  P  +TY ++I  L KI ++      
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676

Query: 485 -----------------------------DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
                                        DEA  I +E+++ G  P ++T+N ++ +  +
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
                     +  M    C P+  +Y++LI GL    +  +A+ + +EM ++G K  V  
Sbjct: 737 AEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFT 796

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           Y    + L++AG     D L +K +  G
Sbjct: 797 YTTMISGLAKAGNIVEADTLFEKFKEKG 824



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 210/503 (41%), Gaps = 99/503 (19%)

Query: 198 MEAVLDE---CGINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMM 252
           +E +L+E    G   S+N  ++++  F  +R  R AF F      K  F      Y +++
Sbjct: 149 LEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFI-QTMRKLKFRPAFSAYTNLI 207

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
             L  +R  + M+++ ++M E G  +++  F   +  FA       A+++ + M     +
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEA--- 367
             V   N  ++  G++     A   F ++K +    +  TYT ++G  C+   L EA   
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 368 ------------GRVWNEMI--------------------DKGFKPDVVAHNIMLEGLLK 395
                          +N MI                     KG  P VV++N +L  L +
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------QNAAVYTCLIT 441
            G+  +A+K FE MK K   PN+ +Y IMI   CK              ++A ++  +IT
Sbjct: 388 KGQVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVIT 446

Query: 442 ------GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                      +R+D    + + ++ + C PD +TY +LI+ +      DEA ++Y++M+
Sbjct: 447 VNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML 506

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC--------------------- 534
            +   P    Y  +++++F+ G  E G K+++EM+R GC                     
Sbjct: 507 DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566

Query: 535 --------------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
                          PD  SYT+LI GL+    + EAY+    M E+G       YN   
Sbjct: 567 KGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVI 626

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               ++G+     +L ++M+  G
Sbjct: 627 DGFCKSGKVNKAYQLLEEMKTKG 649



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 23/365 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG----LLSMETFKIAMNAFAAAKERKKAV 299
           N+  Y S++    +  + E    +  EM   G    LL + T+   M+    A E +K  
Sbjct: 513 NAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTY---MDCVFKAGEIEKGR 569

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+F+ +    F     +   L+  L ++    EA  LF  +K +    +   Y  ++ G+
Sbjct: 570 ALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGF 629

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + +A ++  EM  KG +P VV +  +++GL KI +  +A  LFE  K+KG   NV
Sbjct: 630 CKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNV 689

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                           +Y+ LI GFG   R+D  Y +++E+ ++G  P+  T+N L+  +
Sbjct: 690 ---------------VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 734

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +   EA+  ++ M      P   TY++++    +   +      W EM ++G  P+ 
Sbjct: 735 VKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNV 794

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT +I GL       EA    E+  EKG  A    YN     LS A R+     L ++
Sbjct: 795 FTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854

Query: 599 MRFSG 603
            R  G
Sbjct: 855 ARLKG 859



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 17/220 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY S++  L +  + +    + EE   KG+ L++  +   ++ F       +A  I E +
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      V T NCLL+ L +++   EA + F  +K  + TPN  TY++L+ G C+++  
Sbjct: 716 MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKF 775

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A   W EM  +GFKP+V  +  M+ GL K G   +A  LFE  K KG   +       
Sbjct: 776 NKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD------- 828

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                   +A+Y  +I G  N  R    Y L +E   +GC
Sbjct: 829 --------SAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 108/214 (50%), Gaps = 7/214 (3%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+  F  A  K G   N   Y+S++   G+  + +    ++EE+ +KGL  ++ T+   +
Sbjct: 673 AYMLFEEAKSK-GIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL 731

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFT 345
           +A   A+E  +A+  F+ M   K      T + L+  L + +   +A + + ++ K  F 
Sbjct: 732 DALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFK 791

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ TYT ++ G  +  N++EA  ++ +  +KG   D   +N ++EGL    + SDA +L
Sbjct: 792 PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRL 851

Query: 406 FEVMKAKGPSPNVRSYTIMIWKF----CKQNAAV 435
           FE  + KG S   ++  +++       C + AA+
Sbjct: 852 FEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAI 885


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 183/416 (43%), Gaps = 54/416 (12%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN------- 287
            G +PG+      YN ++  +    +  ++  +  E+ EK    M    + +N       
Sbjct: 398 CGCQPGYV----VYNILIGGICGNEKLPSLDVL--ELAEKAYGEMLDAHVVLNKVNVSNL 451

Query: 288 --AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRF 344
                 A + +KA +I   M    F     T + ++  L  +     A LLF+++K +  
Sbjct: 452 ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHV 511

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ TYT+L+  +C+V  L +A + ++EM+  G  P+VV +  ++   LK  K S A +
Sbjct: 512 VPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANE 571

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------------------- 431
           LFE+M ++G  PNV +YT +I   CK                                  
Sbjct: 572 LFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNI 631

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEA 487
              N   Y  L+ G     ++    DLL  M   GC P+ + Y+ALI    K+ K+ DEA
Sbjct: 632 RDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKL-DEA 690

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             ++ +M   G+ P ++TY+ ++   F+    ++  KV   M+   C P+   YT +I G
Sbjct: 691 QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDG 750

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L    ++ EAY+ +  M EKG    V+ Y        +AG+     EL ++M   G
Sbjct: 751 LCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 39/402 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +  TYN+++ +   A + +T   +  EM + G  +   T    ++    A   ++A
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA 286

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +A+ E   K +FK        ++  L  + L +EA     +++     PN+ TY +LL G
Sbjct: 287 LALIE---KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCG 343

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R + L    R+ + MI +G  P     N ++    + G  S A KL + M   G  P 
Sbjct: 344 CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPG 403

Query: 418 VRSYTIMIWKFC-----------------------------KQNAAVYTCLITGFGNRRR 448
              Y I+I   C                             K N +     + G G   +
Sbjct: 404 YVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAG---K 460

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
            +  Y +++EM  +G  PD  TY+ +I L+      D A  +++EM  +   P + TY +
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++ S+ + G  +  RK +DEM+R GC P+  +YT LI   +   +   A +  E ML +G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
               V+ Y        ++G+     ++  +MR  G  ++ +V
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKACQIYARMR--GNADIPDV 620



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 42/401 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ ++ +L  A + +    + EEM    ++  + T+ I +++F      ++A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F+ M +      V T   L+    +++    A  LF+  L     PN+ TYT L+ G
Sbjct: 535 RKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDG 594

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
            C+   + +A +++  M        +D  FK        P++  +  +++GL K  K  +
Sbjct: 595 HCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKE 654

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A  L +VM  +G  PN   Y  +I  FCK                     N   Y+ LI 
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
                +R+D+   +L  M E  C P+ + Y  +I  L K+ K  DEA R+   M   G  
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK-TDEAYRLMSMMEEKGCH 773

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++  + + G  +   ++  +M  +GC P+  +Y VLI    +     +A++ 
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQL 833

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAG--RSYVLDELAQKM 599
           L+EM +      +  Y K     +R       +LDE+A+ +
Sbjct: 834 LDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENV 874



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 170/425 (40%), Gaps = 108/425 (25%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G A N  TY +++    +AR+  +   + E M  +G + ++ T+   ++    + + +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 297 KAVAIFELMNK----------YKFKAG------VDTINCLLENLGRSKLPKEAQLLFDKL 340
           KA  I+  M            +K   G      + T   L++ L ++   KEA+ L D +
Sbjct: 603 KACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVM 662

Query: 341 K-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 PN   Y  L+ G+C+V  L EA  V+ +M ++G+ P+V  ++ +++ L K  + 
Sbjct: 663 SVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRL 722

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A+K+   M     +PNV  YT MI   CK                     N   YT +
Sbjct: 723 DLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAM 782

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM----- 494
           I GFG   ++D   +L+++M  +GC P+ +TY  LI       + D+A ++  EM     
Sbjct: 783 IDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYW 842

Query: 495 ---------VRSGFK-------------------PTIHTYNMIMKSYFQTGNYEMGRKV- 525
                    V  GF                    P I  Y +++ S+ + G  E+  ++ 
Sbjct: 843 PKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELH 902

Query: 526 ------------------------------------WDEMIRRGCCPDDNSYTVLIGGLI 549
                                               + +MI+RG  P+ + +  L+ GLI
Sbjct: 903 KXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLI 962

Query: 550 SQDRS 554
             +R+
Sbjct: 963 RINRT 967



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 150/387 (38%), Gaps = 60/387 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+  LVVDVL   ++      +FF WAG + G+ H    Y++++ +LG           L
Sbjct: 127 LNETLVVDVLSLVKNPEL-GVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFL 185

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI-NCLLENLGRS 327
            E+ +                    E K+ +   +L+N    K   + + N  LE LGR 
Sbjct: 186 REIRD--------------------EDKEILG--KLLNVLIRKCCRNGLWNVALEELGRL 223

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           K               + P+  TY  L+  +     L  A  V  EM D GF  D     
Sbjct: 224 K------------DLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLG 271

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
             +  L K G+  +A+ L E  +                   K +  +YT +I+G     
Sbjct: 272 CFVHLLCKAGRWREALALIEKEEF------------------KLDTVIYTQMISGLCEAS 313

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
             +   D L  M    C P+ +TY  L+     ++      RI   M+  G  P+   +N
Sbjct: 314 LFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFN 373

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG------LISQDRSGEAYKYL 561
            ++ +Y ++G+Y    K+  +M   GC P    Y +LIGG      L S D    A K  
Sbjct: 374 SLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAY 433

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGR 588
            EML+  +    ++ +  A  L  AG+
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGK 460


>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
          Length = 634

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 38/414 (9%)

Query: 224 ARRP-----AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
           ARRP     AFR     G +P       TY ++++ L   R F+T+  +L E+ + GL  
Sbjct: 92  ARRPHQAHSAFRHLVDDGHRPSLV----TYTTLLAALTSQRAFDTIPWLLAEVEDAGLRP 147

Query: 279 METFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
              F  A+ NA   A+   +A   F  M     +    T N L++  G +  P+E+Q +F
Sbjct: 148 DSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVF 207

Query: 338 DKLKHRFT-------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           D +            PNLTTY +L+  WC    L EA RV   M   G  PDVV +N + 
Sbjct: 208 DMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLA 267

Query: 391 EGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
               K  +   A +L  E+ +  G   + R++ I++  +C++                  
Sbjct: 268 SAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGV 327

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N  V+  L+ GF +   M  V D+L  ME+ G  PD +TY+  +  +       + ++
Sbjct: 328 LPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMK 387

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++ +M+ +G +P    Y+++ K Y +    E   ++  +M R G  P+  ++T +I G  
Sbjct: 388 VFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWC 447

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           S    G A +    M + G++  +  +       S   + +  +E+ Q M+ +G
Sbjct: 448 SVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAG 501



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 86/169 (50%), Gaps = 5/169 (2%)

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           + ++ ++E+ G K    + T+   +NA ++     K + +F+ M +   +      + L 
Sbjct: 351 DDVLGLMEQFGIKP--DIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILA 408

Query: 322 ENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           +   R++ P++A+ L  ++ +    PN+ T+T ++ GWC V ++  A RV+  M D G +
Sbjct: 409 KGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDAGVR 468

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--IWK 427
           P++     ++ G  ++ +   A ++ ++M+  G  P   +Y ++   WK
Sbjct: 469 PNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWK 517


>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g53330
 gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
 gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 471

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 193/396 (48%), Gaps = 25/396 (6%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMET-FKIAMNAFAAAKERKKA 298
           F ++   Y+ +++ LG ++ F+ +  +L  +  +  ++  E  F   +N F   K   +A
Sbjct: 43  FRYSLLCYDIIITKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRA 102

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + +F+ M +Y+ +  V ++N LL  L +    ++ +     +     P+  TY +L+ G 
Sbjct: 103 LHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGC 162

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL-FEVMKAKGPSPN 417
            +     +A ++++EM+ K  KP  V    ++ GL K  +  +A+K+  +++K  G  P 
Sbjct: 163 SQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPT 222

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  +I   C                    K +AA+Y+ LI+      R + V  +L+
Sbjct: 223 VHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILE 282

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM E+GC PD +TYN LI    ++   + A R+  EMV  G KP + +YNMI+  +F+  
Sbjct: 283 EMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIK 342

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +E    ++++M RRGC PD  SY ++  GL    +  EA   L+EML KG K       
Sbjct: 343 KWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLE 402

Query: 578 KFAADLSRAGRSYVLDELAQKMR--FSGKFEVSNVL 611
            F   L  +G+  +L ++   +    +G  +V +V+
Sbjct: 403 GFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVM 438


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 167/359 (46%), Gaps = 18/359 (5%)

Query: 248 YNSMMSILGRARQF-ETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +N ++S + R RQ+ + ++S+ ++M   GL  +  T  I +N F   +      ++   +
Sbjct: 93  FNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKV 152

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            K   +  + T   L+  L ++    +A  LFD +  R   P++ TYT ++ G C++   
Sbjct: 153 IKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGET 212

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  +  +M + G +PDVV ++ +++ L K    ++A+ +F  MKAKG SP V SYT +
Sbjct: 213 AAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSL 272

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C               +  R      +L EM      PD +T++ LI +   +   
Sbjct: 273 IQGLC---------------SFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNV 317

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  + K M   G +P + TYN +M  Y         RK++D MI RGC PD  SY++L
Sbjct: 318 LEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSIL 377

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           I G     R  EA +   EM+ +G+    + Y        + G+     EL + M  +G
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNG 436



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 22/353 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY ++++ L +  +      ++++MGE G    + T+   +++    +   +A+ IF  M
Sbjct: 198 TYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYM 257

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
                   V +   L++ L      KEA  + +++      P++ T+++L+  +C+  N+
Sbjct: 258 KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNV 317

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +EA  V   M + G +P+V+ +N ++ G     +  +A KLF+VM  +G  P+V SY+I+
Sbjct: 318 LEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSIL 377

Query: 425 IWKFC--------KQ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  +C        KQ            N   YT LI  F    ++    +L K+M   G 
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGY 437

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TY+ L++    Q    +A R+++ M  +  KP +  Y +++ S  ++GN    RK
Sbjct: 438 LPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARK 497

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           ++ E+   G  PD   YT +I GL  +    EA +   +M E G       YN
Sbjct: 498 LFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYN 550



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 174/365 (47%), Gaps = 19/365 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++++ ++D L + R     A   F +   K G +    +Y S++  L    +++   +ML
Sbjct: 232 VTYSTLIDSLCKDRLVNE-ALDIFSYMKAK-GISPTVVSYTSLIQGLCSFSRWKEASAML 289

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            EM    ++  + TF + ++ F       +A  + + M +   +  V T N L+      
Sbjct: 290 NEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQ 349

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ LFD +  R   P++ +Y++L+ G+C VK + EA +++NEMI +G  P+ V++
Sbjct: 350 MEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSY 409

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
             ++    ++GK  +A +LF+ M   G  P++ +Y++++  FCKQ          G+  +
Sbjct: 410 TTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ----------GYLGK 459

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
                 + L + M+     P+ + Y  LI  M      + A +++ E+   G +P +  Y
Sbjct: 460 -----AFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIY 514

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             I+    + G  +   + + +M   GC P++ SY V+I G +       A + + EM +
Sbjct: 515 TTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRD 574

Query: 567 KGMKA 571
           KG  A
Sbjct: 575 KGFVA 579



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 16/228 (7%)

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA-IKLFEVMKAKGPSPNVRS 420
           +N+ +A   +N M+ +   P ++  N +L  ++++ +  DA I L + M+  G SPN  +
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCT 128

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
             I+I  FC                 + +D+ + +L ++ + G  P  +T+  LI  +  
Sbjct: 129 LNILINCFCLM---------------QHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCK 173

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
                +A+ ++ +MV  G +P ++TY  I+    + G       +  +M   GC PD  +
Sbjct: 174 AGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVT 233

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           Y+ LI  L       EA      M  KG+   V+ Y      L    R
Sbjct: 234 YSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSR 281


>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 191/392 (48%), Gaps = 37/392 (9%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMET-FKIAMNAFAAAKER 295
           K  F ++   Y+ +++ LG ++ F+ +  +L ++  +  ++  E  F   +N F   +  
Sbjct: 40  KRPFRYSLLCYDIIITKLGGSKMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLP 99

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-------PNL 348
            +A+ +F+ M +Y+ +  V ++N LL  L +          F+K+K R +       P+ 
Sbjct: 100 SRALHMFDEMPQYRCQRTVKSLNSLLNTLLKCGE-------FEKMKERLSSIDEFGKPDA 152

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE- 407
            TY +L+ G  +     +A ++++EM+ K  KP  V    ++ GL K  +  +A+K+ + 
Sbjct: 153 CTYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKNLRVKEALKMKQD 212

Query: 408 VMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRR 447
           ++K  G  P V  Y  ++   C                    K ++A+Y+ LI+      
Sbjct: 213 MLKVYGVRPTVHIYASLVKALCQIGELSFAFKLKDEAYEGKIKVDSAIYSTLISSLIKAG 272

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R + V  +L+EM E+GC PD +TYN LI    ++   + A R+  EMV  G KP + +YN
Sbjct: 273 RSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMVEKGLKPDVISYN 332

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           MI+   F+   +E    ++++M RRGC PD  SY ++  GL    +  EA   L+EML K
Sbjct: 333 MILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAAILDEMLFK 392

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G K       +F   L  +G+  +L ++   M
Sbjct: 393 GYKPRRDRLERFLQKLCESGKLEILSKVISSM 424



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 135/308 (43%), Gaps = 23/308 (7%)

Query: 260 QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
           +FE M   L  + E G     T+ I ++  +       A+ +F+ M K K K    T   
Sbjct: 133 EFEKMKERLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGT 192

Query: 320 LLENLGRSKLPKEA-QLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           L+  L ++   KEA ++  D LK +   P +  Y  L+   C++  L  A ++ +E  + 
Sbjct: 193 LIHGLCKNLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQIGELSFAFKLKDEAYEG 252

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--AAV 435
             K D   ++ ++  L+K G+ ++  ++ E M  KG  P+  +Y ++I  FC +N   + 
Sbjct: 253 KIKVDSAIYSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESA 312

Query: 436 YTCLITGFGNRRRMDIV-YD-----------------LLKEMEERGCPPDGLTYNALIKL 477
           Y  L        + D++ Y+                 L ++M  RGC PD L+Y  +   
Sbjct: 313 YRVLDEMVEKGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVFDG 372

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      +EA  I  EM+  G+KP        ++   ++G  E+  KV   M  RG   D
Sbjct: 373 LCEGLQFEEAAAILDEMLFKGYKPRRDRLERFLQKLCESGKLEILSKVISSM-HRGNADD 431

Query: 538 DNSYTVLI 545
              ++V+I
Sbjct: 432 AKVWSVMI 439


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 183/416 (43%), Gaps = 54/416 (12%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN------- 287
            G +PG+      YN ++  +    +  ++  +  E+ EK    M    + +N       
Sbjct: 398 CGCQPGYV----VYNILIGGICGNEKLPSLDVL--ELAEKAYGEMLDAHVVLNKVNVSNL 451

Query: 288 --AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRF 344
                 A + +KA +I   M    F     T + ++  L  +     A LLF+++K +  
Sbjct: 452 ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHV 511

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ TYT+L+  +C+V  L +A + ++EM+  G  P+VV +  ++   LK  K S A +
Sbjct: 512 VPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANE 571

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------------------- 431
           LFE+M ++G  PNV +YT +I   CK                                  
Sbjct: 572 LFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNI 631

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEA 487
              N   Y  L+ G     ++    DLL  M   GC P+ + Y+ALI    K+ K+ DEA
Sbjct: 632 RDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKL-DEA 690

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             ++ +M   G+ P ++TY+ ++   F+    ++  KV   M+   C P+   YT +I G
Sbjct: 691 QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDG 750

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L    ++ EAY+ +  M EKG    V+ Y        +AG+     EL ++M   G
Sbjct: 751 LCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 39/402 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +  TYN+++ +   A + +T   +  EM + G  +   T    ++    A   ++A
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA 286

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +A+ E   K +FK        ++  L  + L +EA     +++     PN+ TY +LL G
Sbjct: 287 LALIE---KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCG 343

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R + L    R+ + MI +G  P     N ++    + G  S A KL + M   G  P 
Sbjct: 344 CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPG 403

Query: 418 VRSYTIMIWKFC-----------------------------KQNAAVYTCLITGFGNRRR 448
              Y I+I   C                             K N +     + G G   +
Sbjct: 404 YVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAG---K 460

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
            +  Y +++EM  +G  PD  TY+ +I L+      D A  +++EM  +   P + TY +
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++ S+ + G  +  RK +DEM+R GC P+  +YT LI   +   +   A +  E ML +G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
               V+ Y        ++G+     ++  +MR  G  ++ +V
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKACQIYARMR--GNADIPDV 620



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 42/401 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ ++ +L  A + +    + EEM    ++  + T+ I +++F      ++A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
              F+ M +      V T   L+    +++    A  LF+  L     PN+ TYT L+ G
Sbjct: 535 RKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDG 594

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
            C+   + +A +++  M        +D  FK        P++  +  +++GL K  K  +
Sbjct: 595 HCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKE 654

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLIT 441
           A  L +VM  +G  PN   Y  +I  FCK                     N   Y+ LI 
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
                +R+D+   +L  M E  C P+ + Y  +I  L K+ K  DEA R+   M   G  
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK-TDEAYRLMSMMEEKGCH 773

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++  + + G  +   ++  +M  +GC P+  +Y VLI    +     +A++ 
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQL 833

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAG--RSYVLDELAQKM 599
           L+EM +      +  Y K     +R       +LDE+A+ +
Sbjct: 834 LDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENV 874



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 172/430 (40%), Gaps = 108/430 (25%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G A N  TY +++    +AR+  +   + E M  +G + ++ T+   ++    + + +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 297 KAVAIFELMNK----------YKFKAG------VDTINCLLENLGRSKLPKEAQLLFDKL 340
           KA  I+  M            +K   G      + T   L++ L ++   KEA+ L D +
Sbjct: 603 KACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVM 662

Query: 341 K-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 PN   Y  L+ G+C+V  L EA  V+ +M ++G+ P+V  ++ +++ L K  + 
Sbjct: 663 SVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRL 722

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A+K+   M     +PNV  YT MI   CK                     N   YT +
Sbjct: 723 DLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAM 782

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM----- 494
           I GFG   ++D   +L+++M  +GC P+ +TY  LI       + D+A ++  EM     
Sbjct: 783 IDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYW 842

Query: 495 ---------VRSGFK-------------------PTIHTYNMIMKSYFQTGNYEMGRKV- 525
                    V  GF                    P I  Y +++ S+ + G  E+  ++ 
Sbjct: 843 PKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELH 902

Query: 526 ------------------------------------WDEMIRRGCCPDDNSYTVLIGGLI 549
                                               + +MI+RG  P+ + +  L+ GLI
Sbjct: 903 KEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLI 962

Query: 550 SQDRSGEAYK 559
             +R  EA +
Sbjct: 963 RINRWEEALQ 972



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 150/387 (38%), Gaps = 60/387 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+  LVVDVL   ++      +FF WAG + G+ H    Y++++ +LG           L
Sbjct: 127 LNETLVVDVLSLVKNPEL-GVKFFIWAGRQIGYGHTGPVYHALLEVLGCGGNDRVPEQFL 185

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI-NCLLENLGRS 327
            E+ +                    E K+ +   +L+N    K   + + N  LE LGR 
Sbjct: 186 REIRD--------------------EDKEILG--KLLNVLIRKCCRNGLWNVALEELGRL 223

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           K               + P+  TY  L+  +     L  A  V  EM D GF  D     
Sbjct: 224 K------------DLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLG 271

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
             +  L K G+  +A+ L E  +                   K +  +YT +I+G     
Sbjct: 272 CFVHLLCKAGRWREALALIEKEEF------------------KLDTVIYTQMISGLCEAS 313

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
             +   D L  M    C P+ +TY  L+     ++      RI   M+  G  P+   +N
Sbjct: 314 LFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFN 373

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG------LISQDRSGEAYKYL 561
            ++ +Y ++G+Y    K+  +M   GC P    Y +LIGG      L S D    A K  
Sbjct: 374 SLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAY 433

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGR 588
            EML+  +    ++ +  A  L  AG+
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGK 460



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 120/282 (42%), Gaps = 59/282 (20%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   N  TY +M+   G+A + +  + ++ +MG KG   +  T+++ +N   AA   
Sbjct: 768 EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAA--- 824

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVL 354
                                            L  +A  L D++K  + P ++  Y  +
Sbjct: 825 --------------------------------GLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+ R + ++  G + +E+ +    P + A+ I+++   K G+   A++L + M +   
Sbjct: 853 IEGFNR-EFIISLG-LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSS--- 907

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                SY+         +  +Y+ LI       ++D  ++L  +M +RG  P+   +  L
Sbjct: 908 ---CTSYS-------AADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYL 957

Query: 475 IK-LMKIQK------MPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           +K L++I +      + D   ++  + VR GF  + H Y  +
Sbjct: 958 VKGLIRINRWEEALQLSDCICQMMVDFVREGFLGSSHDYEFL 999


>gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa]
 gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 199/434 (45%), Gaps = 19/434 (4%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LD+ G  L   +V  VL+R       A+RFF W   K GF H ++TYN+M+   G
Sbjct: 156 SMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAG 215

Query: 257 RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
            AR+F  +  +LEEM +      ++T+ I +  +  AK   KA+ + E M K   +  V+
Sbjct: 216 EAREFSVVDVLLEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVE 275

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
                L +L  +   + A  ++ ++  R   PNL+ Y +LL    +  ++     V ++M
Sbjct: 276 VYEVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDM 335

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           I     P+   H  +L+     G+  +A++L   +K K                 + +  
Sbjct: 336 IRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKE---------------IQLDYE 380

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           V   L+ G     R+    +++ E+ +R    DG  Y  +I     +    +A+ +++ M
Sbjct: 381 VSETLVKGLSRANRIADALEIV-EIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSM 439

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G  PT  TY  +M+  F++  Y+   +++DEM+ RG   D  +   ++ G + QD  
Sbjct: 440 KEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHI 499

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
            EA++  E M +KG+K     Y+ F  +L +  R+  + ++  KM+ S  F + + +  W
Sbjct: 500 SEAWEVFETMEDKGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKMQASKMF-ICDEIFEW 558

Query: 615 AETTKNRVYRKDRI 628
             +   R    D I
Sbjct: 559 VISCMERKGEMDNI 572



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 116/506 (22%), Positives = 209/506 (41%), Gaps = 81/506 (16%)

Query: 146  SVTDDNQDSDGECDGNNSESEITSVSYKSTA------DPREIERVCKVIDELFSLDRNME 199
            S  D +++ +   D N +ES    V + S        D ++++ V +++  L       +
Sbjct: 592  SRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQD 651

Query: 200  AVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR 259
            A L++C I  +  LV + L         A  FF W G + GF   + TYN  M + GR +
Sbjct: 652  A-LEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGK 710

Query: 260  QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
             F+ M S+  EM  +G L                                     DT   
Sbjct: 711  DFKHMRSLFYEMRRRGFL----------------------------------IPPDTWAI 736

Query: 320  LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC--RVKNLMEAGRVWNEMID 376
            ++   GR+ L + A  +F ++K     PN +TY  L+   C  + + + EA +++ EMI 
Sbjct: 737  MIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIR 796

Query: 377  KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKGPSPNVRSYTIMIWKFCKQ---- 431
             G  PD       L  L ++GK  +A K  + + KA    P   SY++ I   C+     
Sbjct: 797  AGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPA--SYSLYIRALCRAGMLE 854

Query: 432  ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                            +   +  L+ G   + R++     +  M++ G  P    Y +LI
Sbjct: 855  EALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGINPTVHVYTSLI 914

Query: 476  KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                 +K+  +A+ I++ M + G +PTI TY+ +++ Y  T N      V+  +  +G  
Sbjct: 915  VHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPA 974

Query: 536  PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            PD  +Y++ +  L    +S EA + L +M++ G+    +++      L+R G+  +   +
Sbjct: 975  PDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVFFGLNREGKQSLAQTV 1034

Query: 596  AQKMRFSGKFEVSNVLARWAETTKNR 621
             QK              +WA T+K +
Sbjct: 1035 LQK--------------KWALTSKRK 1046


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 180/421 (42%), Gaps = 50/421 (11%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF------------ 261
           VV++L+  ++      RFF W   +  F H+   + SM++ L R R F            
Sbjct: 81  VVNILQTHKNTDS-VLRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIK 139

Query: 262 --------ETMVSMLEEMGEK-----GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
                   + +   L E+  K      L S  T  I +  F      +    ++  M   
Sbjct: 140 SCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD---MYIKMLNS 196

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEA 367
             +  + T N ++  L +    +EA+L+   + ++   PN  TYT L+ G CR  NL  A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
             +++ M+  G  P+ V ++ ++ GL   G+  +A+ + E M  KG  P V +YTI +  
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 428 FCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            C                      N   +T LI+G     + +I   L  +M   G  P 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT 376

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYNALI  + ++   + A  I+K M+  G  P+  TYN I+K +   G+ +    ++D
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +M++ G  P+  +Y  LI G   Q     A + LE M   G+K     Y +  +  SR G
Sbjct: 437 KMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGG 496

Query: 588 R 588
           +
Sbjct: 497 K 497



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N +T+ +++S L R  +FE  + +  +M   GL+ +  T+   +N        +
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFE 394

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A  IF+ M  +       T N +++        ++A ++FDK LK   +PN+ TY  L+
Sbjct: 395 TAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+  NL  A R+   M   G KPD   +  ++ G  + GK   A  LF  M   G S
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS 514

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN                  YT +I G+ N  ++D    L  +M E G  P   TYN +I
Sbjct: 515 PN---------------HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMI 559

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     EA     +MV+ G  P + TY   +    + G   +  K++ EM +R   
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619

Query: 536 PDDNSYTVLIGGLISQDRS--GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           P+  +Y+ LI GL  + R+   E Y  L  +   G +  V  Y      L   GR Y  D
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEAD 679

Query: 594 ELAQKMRFSG 603
           +L   M+  G
Sbjct: 680 QLVVSMQKKG 689



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 163/380 (42%), Gaps = 21/380 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   NS TY+++++ L    + E  + MLEEM +KG+  ++ T+ I + +   A    
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSS 324

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +AV +   M K      + T   L+  L R    + A  L+ K L     P   TY  L+
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C       A  ++  M+  G  P    +N +++    +G    A+ +F+ M   G S
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV +Y  +I+ +CKQ             N  R      LL+ M+  G  PD  TY  LI
Sbjct: 445 PNVITYNTLIYGYCKQG---------NLNNAMR------LLEIMKGNGLKPDAWTYTELI 489

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    + A  ++  M+  G  P   TY  I+  YF     +    ++ +M+  G  
Sbjct: 490 SGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNL 549

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YV 591
           P   +Y V+I G    +   EA  +  +M+++G+   V+ Y  F   L R GR+     +
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 592 LDELAQKMRFSGKFEVSNVL 611
             E+ ++  F   +  S+++
Sbjct: 610 FHEMEKRNYFPNLYTYSSLI 629



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 172/408 (42%), Gaps = 44/408 (10%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           FC  GD            K G + N  TYN+++    +       + +LE M   GL   
Sbjct: 422 FCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPD 481

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLF 337
             T+   ++ F+   + + A ++F  M ++       T   +++     +K+     L +
Sbjct: 482 AWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFW 541

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
             ++    P+  TY V++ G+ +  ++ EA     +M+ +G  P+V+ +   ++GL + G
Sbjct: 542 KMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNG 601

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------------NAAV 435
           +   A K+F  M+ +   PN+ +Y+ +I+  C++                      N   
Sbjct: 602 RTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDT 661

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIY 491
           YT L+ G     R      L+  M+++G  P    Y AL+    K +K++     A+ I+
Sbjct: 662 YTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVE----SALNIF 717

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             M   GF+  +  Y  ++ +  +    E  + ++  M+ +    D+  +TVL+ GL+ +
Sbjct: 718 YSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKE 777

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             +    K L  M  +        Y   A +LS    +  + +++Q++
Sbjct: 778 GETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           +T L+   G    +D+  D+  +M   G  P  LT+N +I ++  +    EA  I   + 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF 229

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           R    P   TY  ++  + +  N ++   ++D M++ GC P+  +Y+ LI GL S+ R  
Sbjct: 230 RYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLE 289

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA   LEEM++KG++  V  Y      L  AG S    EL  KM+  G
Sbjct: 290 EAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 175/388 (45%), Gaps = 31/388 (7%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           V  +L   R   + A +FF WAG + GF H + +Y  ++ ++ RAR +      ++E+  
Sbjct: 73  VSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIM 132

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
              + M  F +  N F      +               +G    + L        L +EA
Sbjct: 133 NSRMDM-GFPVC-NIFDMLWSTRNICV-----------SGSGVFDVLFSVFVELGLLEEA 179

Query: 334 QLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
              F ++++ R  P   +   LL    +  N     + +N+MI  G  P V  +N+M++ 
Sbjct: 180 NECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDY 239

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L K G   ++ +LF  M+  G SP+V                 Y  LI G+G    ++ V
Sbjct: 240 LCKEGDLENSRRLFVQMREMGLSPDV---------------VTYNSLIDGYGKVGSLEEV 284

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             L  EM++ GC PD +TYN LI    K +KMP  A   + EM  +G KP + TY+ ++ 
Sbjct: 285 ASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP-RAFEYFSEMKNNGLKPNVVTYSTLID 343

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           ++ + G  +   K+  +M R G  P++ +YT LI          EA+K L +ML+ G+K 
Sbjct: 344 AFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKL 403

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
            ++ Y      L +AGR    +E+ + M
Sbjct: 404 NIVTYTALLDGLCKAGRMIEAEEVFRSM 431



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 165/360 (45%), Gaps = 22/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + +  TYNS++   G+    E + S+  EM + G +  + T+   +N +   ++  +A
Sbjct: 260 GLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRA 319

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
              F  M     K  V T + L++   +  + + A +LL D  +    PN  TYT L+  
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  NL EA ++ N+M+  G K ++V +  +L+GL K G+  +A ++F  M   G SPN
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
            + YT ++  + K                     +  +Y  +I G  ++R+++    +L+
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 499

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ RG   + +    +I          +A+  ++EM   G + TI TY +++    + G
Sbjct: 500 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAG 559

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E+    +  M+  G  P+   YT LI GL   +    A K  +EM  +GM   +  + 
Sbjct: 560 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFT 619



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 164/366 (44%), Gaps = 24/366 (6%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFE 303
           +R+ N ++  L ++   + +     +M   G+  S+ T+ + ++      + + +  +F 
Sbjct: 195 ARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFV 254

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
            M +      V T N L++  G+    +E   LF+++K     P++ TY  L+  +C+ +
Sbjct: 255 QMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFE 314

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            +  A   ++EM + G KP+VV ++ +++   K G    AIKL   M+  G  PN  +YT
Sbjct: 315 KMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYT 374

Query: 423 IMI------------WKF--------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +I            WK          K N   YT L+ G     RM    ++ + M + 
Sbjct: 375 SLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD 434

Query: 463 GCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           G  P+   Y AL+   +K ++M D A++I K+M     KP +  Y  I+  +      E 
Sbjct: 435 GISPNQQVYTALVHGYIKAERMED-AMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE 493

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            + + +EM  RG   +    T +I       +S +A  + +EM + G++A ++ Y     
Sbjct: 494 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLID 553

Query: 582 DLSRAG 587
            L  AG
Sbjct: 554 GLCEAG 559



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 185/470 (39%), Gaps = 74/470 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N +++   +F    R AF +F    +  G   N  TY++++    +    +  + +L
Sbjct: 301 ITYNGLINCYCKFEKMPR-AFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMMQGAIKLL 358

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            +M   GLL  E T+   ++A   A    +A  +   M +   K  + T   LL+ L ++
Sbjct: 359 XDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 418

Query: 328 KLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ +F   LK   +PN   YT L+ G+ + + + +A ++  +M +   KPD++ +
Sbjct: 419 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 478

Query: 387 -----------------------------------NIMLEGLLKIGKRSDAIKLFEVMKA 411
                                                +++   K GK SDA+  F+ M+ 
Sbjct: 479 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 538

Query: 412 KGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDI 451
            G    + +Y ++I   C                    + N AVYT LI G      ++ 
Sbjct: 539 VGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIES 598

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              L  EM+ RG  PD   + ALI          EA+ +   M     +  +H Y  ++ 
Sbjct: 599 AKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 658

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + Q G     RK ++EMI +G  P++     L+     + +  EA +   EM       
Sbjct: 659 GFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSF 718

Query: 572 PV---LDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETT 618
                L YN+   +L+     Y+            KF++ + L R+  +T
Sbjct: 719 EFDAQLAYNEQGVNLTLHAYLYL------------KFDIQHQLNRFGTST 756


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 16/338 (4%)

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           +L EM ++   ++ T+   +          +A+ + +LM +        T   L++   +
Sbjct: 264 VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            K  KEA+L+F+ +      PN  TYT L+ G+ +  N+ EA R+ +EMI +G K +VV 
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N M+ G+ K G+ + A+ LF  M   G  P+  +Y ++I  + K +     C       
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKAC------- 436

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
                   +LL EM+ R   P   TY+ LI  +       +A  +  +M+R+G KP +  
Sbjct: 437 --------ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFM 488

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  ++K+Y Q   YEM  ++   MI  G  PD   Y  LI GL    +  EA   L +M 
Sbjct: 489 YGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMG 548

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EKG+K     Y  F    S++G   V +   + M  SG
Sbjct: 549 EKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 170/368 (46%), Gaps = 22/368 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+ +  L +    +  + + + M EKGL     T+ + ++ F   K  K+A  IF
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIF 334

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E M          T   L++   +    +EA  + D++  R    N+ TY  ++GG  + 
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKA 394

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  ++NEM+  G +PD   +N++++G LK    + A +L   MKA+  +P+  +Y
Sbjct: 395 GEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454

Query: 422 TIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           +++I   C                    K N  +Y  LI  +    R ++  +LLK M  
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA 514

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD   YN LI  +   K  +EA  +  +M   G KP  HTY   +  Y ++G  ++
Sbjct: 515 NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQV 574

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             + + +M+  G  P++  YT+LI G      + EA    + MLEKG+   +  Y+    
Sbjct: 575 AERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 582 DLSRAGRS 589
            LS+ G++
Sbjct: 635 SLSKNGKT 642



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 181/396 (45%), Gaps = 19/396 (4%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           ++ L+VD   + + ++     F   +    G   N  TY +++    +    E  + + +
Sbjct: 313 TYTLLVDGFCKQKRSKEAKLIF--ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKD 370

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS- 327
           EM  +GL L++ T+   +   A A E  KA+++F  M     +    T N L++   +S 
Sbjct: 371 EMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSH 430

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            + K  +LL +    + TP+  TY+VL+ G C   +L +A  V ++MI  G KP+V  + 
Sbjct: 431 DMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYG 490

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            +++  ++  +   AI+L ++M A G  P++         FC      Y CLI G    +
Sbjct: 491 TLIKAYVQESRYEMAIELLKIMIANGVLPDL---------FC------YNCLIIGLCRAK 535

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +++    LL +M E+G  P+  TY A I L         A R +K+M+ SG  P    Y 
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYT 595

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++K +   GN       +  M+ +G  PD  +Y+ +I  L    ++ EA     + L+ 
Sbjct: 596 ILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT 655

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G+   V  YN   +   + G      +L  +M  +G
Sbjct: 656 GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 186/416 (44%), Gaps = 48/416 (11%)

Query: 231 FFCWAGDK---PGFAHNS-----RTYNS--------MMSILGRARQ--FETMVSMLEEMG 272
           FF W+  K   P + H+      R  NS        M+  L + R+   E + S++    
Sbjct: 106 FFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYR 165

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           E G  ++  F I ++ F       +A ++F       F     T+ C   NL R  L   
Sbjct: 166 EFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGF---FPTLICC-NNLMRDLLKAN 221

Query: 333 AQLLFDKL-----KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              LF K+     + +  P++ TYT ++   C+V ++++   V +EM +K  KP++  +N
Sbjct: 222 MMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYN 280

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
             + GL + G   +A+++ ++M  KG  P+  +YT+++  FCKQ                
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               N   YT LI GF     ++    +  EM  RG   + +TYNA+I  +       +A
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + ++ EM+ +G +P   TYN+++  Y ++ +     ++  EM  R   P   +Y+VLI G
Sbjct: 401 MSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L       +A + L++M+  G+K  V  Y        +  R  +  EL + M  +G
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG 516



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 182/396 (45%), Gaps = 27/396 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKE 294
           G+K G   N+ TY + +++  ++ + +      ++M   G++     + I +        
Sbjct: 548 GEK-GIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGN 606

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTV 353
             +A++ F+ M +      +   + ++ +L ++   KEA  +F K LK    P++  Y  
Sbjct: 607 TVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNS 666

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE--GLLKIGKRSDAIKLFEVMKA 411
           L+ G+C+  ++ +A ++++EM+  G  P++V +N ++   G  K G  ++A KLF+ M +
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS 726

Query: 412 KGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIV 452
           KG SP+   Y I+I    K+                   + + +  LI  F    ++   
Sbjct: 727 KGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEA 786

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            +L  +M ++   P+ +TY  LI      +M +EA +++ +M      P   TY  ++ S
Sbjct: 787 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 846

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y Q GN      ++ +M  RG   D  +Y V+      + +S EA K L + L +G+K  
Sbjct: 847 YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLE 906

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
              ++     L +  +   + EL  +M   GK E+S
Sbjct: 907 DDVFDALIFHLCKEKQISTVLELLSEM---GKEELS 939



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 137/307 (44%), Gaps = 20/307 (6%)

Query: 240 GFAHNSRTYNSMMSILG--RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           G   N   YN++++  G  ++        + +EM  KG+      + I ++        +
Sbjct: 691 GINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE 750

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
           KA+++F    + K    +   N L+++  +     EA+ LFD +   + TPN+ TYT+L+
Sbjct: 751 KALSLFHEAQQ-KSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI 809

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + + + + EA +++ +M  +   P+ + +  +L    +IG R   I LF+ M+A+G +
Sbjct: 810 DAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIA 869

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +  +Y +M   +CK+  ++                   LL +    G   +   ++ALI
Sbjct: 870 CDAIAYGVMASAYCKEGKSLEA---------------LKLLNKSLVEGIKLEDDVFDALI 914

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +  +K     + +  EM +     +  T N ++  ++++GN +   KV   M R G  
Sbjct: 915 FHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWV 974

Query: 536 PDDNSYT 542
           P   S T
Sbjct: 975 PTSLSLT 981


>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 636

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 38/414 (9%)

Query: 224 ARRP-----AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
           ARRP     AFR     G +P       TY ++++ L   R F+T+  +L E+ + GL  
Sbjct: 92  ARRPHQAHSAFRHLVDDGHRPSLV----TYTTLLAALTSQRAFDTIPWLLAEVEDAGLRP 147

Query: 279 METFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
              F  A+ NA   A+   +A   F  M     +    T N L++  G +  P+E+Q +F
Sbjct: 148 DSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVF 207

Query: 338 DKLKHRFT-------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           D +            PNLTTY +L+  WC    L EA RV   M   G  PDVV +N + 
Sbjct: 208 DMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLA 267

Query: 391 EGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
               K  +   A +L  E+ +  G   + R++ I++  +C++                  
Sbjct: 268 SAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGV 327

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N  V+  L+ GF +   M  V D+L  ME+ G  PD +TY+  +  +       + ++
Sbjct: 328 LPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMK 387

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++ +M+ +G +P    Y+++ K Y +    E   ++  +M R G  P+  ++T +I G  
Sbjct: 388 VFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWC 447

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           S    G A +    M + G++  +  +       S   + +  +E+ Q M+ +G
Sbjct: 448 SVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAG 501



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 86/169 (50%), Gaps = 5/169 (2%)

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           + ++ ++E+ G K    + T+   +NA ++     K + +F+ M +   +      + L 
Sbjct: 351 DDVLGLMEQFGIKP--DIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILA 408

Query: 322 ENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           +   R++ P++A+ L  ++ +    PN+ T+T ++ GWC V ++  A RV+  M D G +
Sbjct: 409 KGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDAGVR 468

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--IWK 427
           P++     ++ G  ++ +   A ++ ++M+  G  P   +Y ++   WK
Sbjct: 469 PNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWK 517


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 204/445 (45%), Gaps = 25/445 (5%)

Query: 163  SESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
            SE  I +++ + T   R + ER  +++ ++F    + E  L+   + + H LV +V+ + 
Sbjct: 1032 SEEAIATIAPRYTHSVRVLDERFIRIL-KIFKWGPDAEKALEVLMLRVDHWLVREVM-KT 1089

Query: 222  RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
                    +FF WA  +  + H++ TY +++  L    Q+  M  M++EM    +  +  
Sbjct: 1090 DVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTP 1149

Query: 282  FKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
             +++  +     AK  ++A+ IF  +   K +      N ++  L      ++   L+++
Sbjct: 1150 TELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNE 1209

Query: 340  LK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +    H F P+  TY+ L+  +C++     A ++ NEM + G +P    + +++    K 
Sbjct: 1210 MSTEGHCF-PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKF 1268

Query: 397  GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
                 A+ LFE M+                ++C+ +   YT LI G G   R+D  Y   
Sbjct: 1269 NDAHGALSLFEEMR---------------HQYCRPDVFTYTELIRGLGKAGRIDEAYHFF 1313

Query: 457  KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
             EM+  GC PD +  N +I  +      D+A+++++EM      P++ TYN I+K+ F++
Sbjct: 1314 CEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFES 1373

Query: 517  GNYEMGRKVWDE-MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
             +       W E M   G  P   +Y++LI G    +R  +A   LEEM EKG       
Sbjct: 1374 KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAA 1433

Query: 576  YNKFAADLSRAGRSYVLDELAQKMR 600
            Y      L +A R  +  EL Q+++
Sbjct: 1434 YCSLIDALGKAKRYDLACELFQELK 1458



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 174/421 (41%), Gaps = 60/421 (14%)

Query: 245  SRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIF 302
            ++ YNSM+ +L    Q+E +  +  EM  +G       T+   ++AF     R  A+ + 
Sbjct: 1184 AQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 1243

Query: 303  ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRV 361
              M +   +        L+    +      A  LF++++H++  P++ TYT L+ G  + 
Sbjct: 1244 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 1303

Query: 362  KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF--------------- 406
              + EA   + EM  +G +PD V  N M+  L K G+  DA+KLF               
Sbjct: 1304 GRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTY 1363

Query: 407  ---------------------EVMKAKGPSPNVRSYTIMIWKFCKQN------------- 432
                                 E MK  G SP+  +Y+I+I  FCK N             
Sbjct: 1364 NTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD 1423

Query: 433  -------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                    A Y  LI   G  +R D+  +L +E++E         Y  +IK +      D
Sbjct: 1424 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLD 1483

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +A+ ++ EM + G  P ++ YN +M    +TG  +        M   GC PD NSY +++
Sbjct: 1484 DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 1543

Query: 546  GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
             GL        A + L  M +  ++  V+ YN     LS AG      +L ++M   G F
Sbjct: 1544 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG-F 1602

Query: 606  E 606
            E
Sbjct: 1603 E 1603



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 18/347 (5%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
            TY  ++  LG+A + +       EM  +G      F   M N    A     A+ +F+ M
Sbjct: 1292 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM 1351

Query: 306  NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
               +    V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+   
Sbjct: 1352 ETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 1411

Query: 364  LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
            + +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y +
Sbjct: 1412 MEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 1471

Query: 424  MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
            MI                  G   R+D   ++  EM + GC PD   YNAL+  +    M
Sbjct: 1472 MI---------------KHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 1516

Query: 484  PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             DEA+   + M   G  P I++YN+I+    +TG      ++   M +    PD  SY  
Sbjct: 1517 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 1576

Query: 544  LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
            ++G L       EA K ++EM   G +  ++ Y+     + +    Y
Sbjct: 1577 VLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDHEY 1623



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 2/179 (1%)

Query: 237  DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
            D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 1423 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 1482

Query: 296  KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
              A+ +F+ MNK      V   N L+  L R+ +  EA     +++ H   P++ +Y ++
Sbjct: 1483 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 1542

Query: 355  LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            L G  +      A  + + M     +PDVV++N +L  L   G   +A KL + M   G
Sbjct: 1543 LNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 1601


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 191/400 (47%), Gaps = 31/400 (7%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           G+K G   +  TY +++  L R ++FE  + M++EM E G +  E    A++       +
Sbjct: 287 GEK-GLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEA---AVSGLIEGLIK 342

Query: 296 KKAV-AIFELMNKYKFKAGVD----TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
             ++   FEL+NK   K GV       N ++ +L ++   +EA+LLF  +  R   PN  
Sbjct: 343 MGSIEGAFELLNKVG-KLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDV 401

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TYT+L+ G+ R   L  A   +N+MI+ G    V ++N M+    K GK   A  LF+ M
Sbjct: 402 TYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEM 461

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
             KG  P V +YT +I  +CK                  +   + L  EM  +G  P+ +
Sbjct: 462 VDKGLKPTVATYTSLISGYCKDGL---------------VPKAFKLYHEMTGKGIAPNTV 506

Query: 470 TYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           T+ ALI  L +I KM  EA +++ EMV     P   TYN++++ + + GN     ++ DE
Sbjct: 507 TFTALICGLCQINKMA-EASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDE 565

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           MI++G  PD  +Y  LI GL S  R  EA +++ ++  K  +   L Y        + GR
Sbjct: 566 MIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGR 625

Query: 589 SYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
             + + L  +    G+  +   L  +A      + + DRI
Sbjct: 626 --IKEALVARQEMVGR-GLQMDLVSYAVLISGALNQNDRI 662



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 173/386 (44%), Gaps = 28/386 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G     RT +++++ L R R+F  ++ + + +   G+      + + +      K+  KA
Sbjct: 185 GLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKA 244

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I            + T N  +  L +SK   EA  +   L  +    +L TY  L+ G
Sbjct: 245 KEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLG 304

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR++       + +EMI+ G+ P   A + ++EGL+K+G    A +L   +   G  PN
Sbjct: 305 LCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPN 364

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           +  Y  MI   CK                     N   YT LI GFG R ++D+ +    
Sbjct: 365 LFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFN 424

Query: 458 EMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M E G      +YN++I    K  KM   A  ++KEMV  G KPT+ TY  ++  Y + 
Sbjct: 425 KMIECGISATVYSYNSMINCQCKFGKM-KMAELLFKEMVDKGLKPTVATYTSLISGYCKD 483

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G      K++ EM  +G  P+  ++T LI GL   ++  EA K  +EM+E  +    + Y
Sbjct: 484 GLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTY 543

Query: 577 NKFAADLSRAG---RSY-VLDELAQK 598
           N       R G   R++ +LDE+ +K
Sbjct: 544 NVLIEGHCREGNTTRAFELLDEMIKK 569



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 172/411 (41%), Gaps = 34/411 (8%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF------ 261
           N+  + V  VL R     R A RFF + G    F H++ ++  ++  L +   F      
Sbjct: 66  NIEPHHVEKVLIRTLDDSRLALRFFNFLGLHRNFHHSTASFCILIHSLLQNNLFWPASSL 125

Query: 262 ------------ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
                       +   +  E   +    S   F + +  +   K     V +  LM  Y 
Sbjct: 126 LQTLLLRGLNPHQIFENFFESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYG 185

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
               V T++ LL  L R +  ++   LFD L +    P+   YTV++   C +K+  +A 
Sbjct: 186 LLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAK 245

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
            + N+    G    +V +N+ + GL K  +  +A+++   +  KG   ++ +Y  ++   
Sbjct: 246 EIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGL 305

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C+                +  ++  +++ EM E G  P     + LI+ +      + A 
Sbjct: 306 CRI---------------QEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAF 350

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +  ++ + G  P +  YN ++ S  +TG  E    ++  M  RG  P+D +YT+LI G 
Sbjct: 351 ELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGF 410

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + +   A+ Y  +M+E G+ A V  YN       + G+  + + L ++M
Sbjct: 411 GRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEM 461



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 38/315 (12%)

Query: 223 HARRPAFRFFCWAGDKPGFAHNSRTYNSMMS---ILGRARQFE----------------- 262
           H +       C+     GF    R   ++++   ++GR  Q +                 
Sbjct: 602 HHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDR 661

Query: 263 TMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
            +  +L EM  KG+      + I ++ F  +   KKA   + +M    +     T   L+
Sbjct: 662 ILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALV 721

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
             L ++    EA+LLF + L     PN  TY   L    +  N+  A ++ N M+   F 
Sbjct: 722 NGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF- 780

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
            + V +NI++ G  +IGK  +A KL +VM   G  P+  +Y+  I+++CK          
Sbjct: 781 ANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCK---------- 830

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
                R  +D   D+ + M +RG  PD + +N LI    +    D A+++  +M+  G K
Sbjct: 831 -----RGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLK 885

Query: 501 PTIHTYNMIMKSYFQ 515
           PT  TY+ +M    Q
Sbjct: 886 PTQSTYHSLMVQLAQ 900



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 22/265 (8%)

Query: 329 LPKEAQLLFDKLKHR----FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           L +  ++LF+ L+        P+   YT+L+ G+ +  NL +A   W  MI +G+ P+ V
Sbjct: 656 LNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSV 715

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +  ++ GL K G  ++A  LF+ M      P               N   Y C +    
Sbjct: 716 TYTALVNGLFKAGYVNEAKLLFKRMLVGEAIP---------------NHITYGCFLDHLT 760

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               M+    L   M + G   + +TYN LI+   +I K   EA ++   M+  G  P  
Sbjct: 761 KEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYCQIGKF-QEAAKLLDVMIGIGMVPDC 818

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY+  +  Y + GN +    +W+ M++RG  PD   +  LI           A +   +
Sbjct: 819 ITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRND 878

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M+ +G+K     Y+     L++  R
Sbjct: 879 MMLRGLKPTQSTYHSLMVQLAQRAR 903


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 26/390 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G   N  TYNS++  L +AR  +    +L +M   G+     T+   ++ ++   + K
Sbjct: 239 QQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWK 298

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFTPNLTTYTV 353
           +AV +F+ M          T +  +  L +    +EA+  FD +    H+   N+ +Y+ 
Sbjct: 299 QAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKL--NIISYST 356

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           LL G+     L++   ++N M+  G  P+    NI++ G  K G   +A+ +FE M+ +G
Sbjct: 357 LLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRG 416

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            +P+V +Y  +I  FC+                     N AVY CLI GF     +    
Sbjct: 417 LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAE 476

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +L+ E+  +G  P  L++ +LI  +  +    EA RI+  ++R+G K  ++ +  ++  Y
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
              G      +V D M+  G  PD  +Y  L+ G     R  +      E+L KG+K   
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTT 596

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             Y      L  AGR+    E+ Q+M  SG
Sbjct: 597 FTYGIILDGLFHAGRTAAAKEMFQEMIESG 626



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 166/371 (44%), Gaps = 22/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ T ++ ++ L +  + E      + M  KG  L++ ++   ++ +A A      
Sbjct: 311 GVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDM 370

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F LM +          N L+    +  + +EA  +F+ ++ R   P++ TY  ++  
Sbjct: 371 SNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHA 430

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+ ++ +A   +N MIDKG +P+   +  +++G    G    A +L   ++ KG  P 
Sbjct: 431 FCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPC 490

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + S+  +I   CK+                    +  ++T LI G+    +M   + +  
Sbjct: 491 ILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHD 550

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   G  PD +TY  L+         D+ + +++E++  G KPT  TY +I+   F  G
Sbjct: 551 AMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAG 610

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                ++++ EMI  G      +Y++L+ GL   + + EA    +++    +K  ++  N
Sbjct: 611 RTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILN 670

Query: 578 KFAADLSRAGR 588
              + + +A R
Sbjct: 671 IMISKMFKARR 681



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 23/265 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK- 404
           P + TY++L+   CR + L  A   +  ++ +G K DV+  + +L GL    +  +A+  
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 405 LFEVMKAKGPSPNVRSYTIMI----------WKF------------CKQNAAVYTCLITG 442
           LF  M   G  P+  SY+ ++          W              C  N  VY+ ++ G
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHG 220

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                ++    DL  EM ++G PP+ +TYN++I  +   +  D+A  I ++MV +G +P 
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN ++  Y   G ++   +++ EM  RG  P+  + +  +  L    R  EA ++ +
Sbjct: 281 NVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFD 340

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAG 587
            ML KG K  ++ Y+      + AG
Sbjct: 341 SMLAKGHKLNIISYSTLLHGYATAG 365



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 125/283 (44%), Gaps = 20/283 (7%)

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           K+ +   L  +  +    PN+ TY  ++   C+ + + +A  +  +M+  G +PD V +N
Sbjct: 226 KVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
            ++ G   +G+   A+++F+ M ++G  PN  + +  +   CK                 
Sbjct: 286 TLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAK 345

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               N   Y+ L+ G+     +  + +L   M   G  P+   +N L+       M  EA
Sbjct: 346 GHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA 405

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + I+++M + G  P + TY  ++ ++ + G+ +     ++ MI +G  P+   Y  LI G
Sbjct: 406 MFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQG 465

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
             +     +A + + E+  KG+   +L +      L + GR +
Sbjct: 466 FCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVF 508



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 144/335 (42%), Gaps = 19/335 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +  TY +++    R    +  +     M +KG+  +   ++  +  F    +  
Sbjct: 414 KRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLV 473

Query: 297 KAVA-IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
           KA   ++E+ NK      + +   L+ +L +     EAQ +FD + +     ++  +T L
Sbjct: 474 KAEELVYEIRNK-GLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSL 532

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C +  + EA RV + M+  G +PD+V +  ++ G  K G+  D + LF  +  KG 
Sbjct: 533 IDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGV 592

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P   +Y I               ++ G  +  R     ++ +EM E G      TY+ L
Sbjct: 593 KPTTFTYGI---------------ILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSIL 637

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +      +EA+ +++++     K  I   N+++   F+    E    ++  +   G 
Sbjct: 638 LTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGL 697

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            P   +YT+++  LI +    EA      ML+ G+
Sbjct: 698 VPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGL 732



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++ E+  KGL   + +F   +N         +A  IF+++ +   KA V+    L++   
Sbjct: 478 LVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYC 537

Query: 326 RSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                 EA  + D +      P++ TY  L+ G C+   + +   ++ E++ KG KP   
Sbjct: 538 LIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTF 597

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            + I+L+GL   G+ + A ++F+ M   G +  + +Y+I++   C+ N       IT F 
Sbjct: 598 TYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEA--ITVFQ 655

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
               M++ +D+             +  N +I  M   +  +EA  ++  +   G  PT+ 
Sbjct: 656 KLCAMNVKFDI-------------VILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQ 702

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           TY ++M++  + G+ E    V+  M++ G  P  +   V++  L+ +    +A  Y+
Sbjct: 703 TYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYM 759



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 143/352 (40%), Gaps = 17/352 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   N   +N +++   +       + + E+M ++GL   + T+   ++AF       
Sbjct: 379 RDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMD 438

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A+  F  M     +       CL++       L K  +L+++       P + ++  L+
Sbjct: 439 DAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLI 498

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+   + EA R+++ +I  G K DV     +++G   IGK S+A ++ + M + G  
Sbjct: 499 NHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIE 558

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ +Y  ++   CK                 R+D    L +E+  +G  P   TY  ++
Sbjct: 559 PDIVTYGTLVNGCCKNG---------------RIDDGLILFRELLHKGVKPTTFTYGIIL 603

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +        A  +++EM+ SG   TI TY++++    +    E    V+ ++      
Sbjct: 604 DGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVK 663

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            D     ++I  +    R  EA      + + G+   V  Y     +L + G
Sbjct: 664 FDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEG 715


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 198/455 (43%), Gaps = 62/455 (13%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-DKP 239
           I ++ +  D + SL + ME V    G++ +   +   +  F   +R    F   A   K 
Sbjct: 102 IVKMGQYYDVVISLSKQMELV----GLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKL 157

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G      T+ ++++ L +  +F   V + ++M  KG    + T+   +N      E   A
Sbjct: 158 GLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAA 217

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M +   +  + T + L+++L R +L  EA  +F  +K +  +P++ TYT L+ G
Sbjct: 218 AGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQG 277

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     EA  + NEM      PD+V  N++++   K GK S+A+ + + M   G  PN
Sbjct: 278 LCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPN 337

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y+                    +MI K CK N   Y  LI G+   +R+D    L  
Sbjct: 338 VVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFN 397

Query: 458 EMEERGCPPDGLTYNALI-------KLMKIQ----------KMPD--------------- 485
           EM  +G  P+ ++YN LI       KL + Q           +PD               
Sbjct: 398 EMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG 457

Query: 486 ---EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              +A R+++ M  +  KP +  Y +++ +  ++GN++  RK++ E+  +G  P    YT
Sbjct: 458 YLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYT 517

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +I GL  +    EA +    M   G     + YN
Sbjct: 518 TIINGLCKEGLLDEALEAFRNMEADGCPPDEISYN 552



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 31/311 (9%)

Query: 317 INCLLE----NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           +NC  +    +LG S L K  +L          P + T+T L+ G C+V    +A  +++
Sbjct: 135 MNCFCQLQRVDLGFSVLAKVIKL-------GLQPTIVTFTTLINGLCKVGEFAQAVELFD 187

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           +M+ KG +PDV  +N ++ GL KIG+ + A  L + M+  G  PN+ +Y+ +I   C+  
Sbjct: 188 DMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDR 247

Query: 432 --NAAV-----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
             N A+                 YT LI G     R      LL EM      PD +T+N
Sbjct: 248 LVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFN 307

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+     +    EA+ + K M   G +P + TY+ +M  Y    +    RK++  MI +
Sbjct: 308 VLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITK 367

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           GC P+  SY +LI G     R  EA +   EM+ +G+    + YN       + G+    
Sbjct: 368 GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREA 427

Query: 593 DELAQKMRFSG 603
            +L + M  +G
Sbjct: 428 QDLFRNMCTNG 438



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 176/367 (47%), Gaps = 19/367 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++++ ++D L R R     A   F +   K G + +  TY S++  L +  +++   ++L
Sbjct: 234 VTYSTLIDSLCRDRLVNE-ALDIFSYMKAK-GISPDIFTYTSLIQGLCKFSRWKEASALL 291

Query: 269 EEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            EM    ++  + TF + ++ F    +  +A+ + + M +   +  V T + L+      
Sbjct: 292 NEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLW 351

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ LF  +  +   PN+ +Y +L+ G+C+ K + EA +++NEMI +G  P+ V++
Sbjct: 352 TDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSY 411

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N ++ G  ++GK  +A  LF  M   G  P++ +Y+I++  FCKQ          G+  +
Sbjct: 412 NTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQ----------GYLGK 461

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
                 + L + M+     P+ + Y  L+  M       +A +++ E+   G +P +  Y
Sbjct: 462 -----AFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLY 516

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             I+    + G  +   + +  M   GC PD+ SY V+I GL+       A   + EM +
Sbjct: 517 TTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRD 576

Query: 567 KGMKAPV 573
           +G  A V
Sbjct: 577 RGFIADV 583



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           R +D        M  R   P  + +  L+  ++K+ +  D  + + K+M   G  P I+T
Sbjct: 71  RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYT 130

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            ++ M  + Q    ++G  V  ++I+ G  P   ++T LI GL       +A +  ++M+
Sbjct: 131 LSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV 190

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            KG +  V  YN     L + G +     L +KM  +G
Sbjct: 191 AKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG 228



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 2/182 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G   N+ +YN+++    +  +      +   M   G L  + T+ I ++ F       KA
Sbjct: 403 GLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKA 462

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F  M     K  +     L+  + +S   K+A+ LF +L      P++  YT ++ G
Sbjct: 463 FRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIING 522

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   L EA   +  M   G  PD +++N+++ GLL+    S A+ L   M+ +G   +
Sbjct: 523 LCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIAD 582

Query: 418 VR 419
           VR
Sbjct: 583 VR 584


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 202/444 (45%), Gaps = 23/444 (5%)

Query: 163 SESEITSVSYKSTADPREI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           +E  + ++S + T   R + ER  +++ ++F    + E  L+   + + H LV +V+ + 
Sbjct: 42  NEDAVAALSPRYTNSVRVLDERFIRIL-KIFKWGPDAERALEVLMLRVDHWLVREVM-KT 99

Query: 222 RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
                   +FF WA  K  + H++ TY +++  L    Q+  M  M++EM    +  +  
Sbjct: 100 DVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTP 159

Query: 282 FKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +++  +     AK   KA+ IF  +   K +      N ++  L      ++   L+++
Sbjct: 160 MELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNE 219

Query: 340 LKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           + +     P+  TY+ L+  +C++     A R+ NEM + G +P    + +++    K+ 
Sbjct: 220 MSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLD 279

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
               A+ LFE M+               + +C+ +   YT LI G G   R+D  Y    
Sbjct: 280 NVHGALSLFEEMR---------------YMYCRPDVFTYTELIRGLGKAGRIDEAYHFYH 324

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+   C PD +  N +I  +      D+ +++++EM  S   P + TYN I+K+ F++ 
Sbjct: 325 EMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESK 384

Query: 518 NYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           +       W E ++  G  P   +Y++LI G    +R  +A   LEEM EKG       Y
Sbjct: 385 SRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444

Query: 577 NKFAADLSRAGRSYVLDELAQKMR 600
                 L +A R  +  EL Q+++
Sbjct: 445 CSLIDALGKAKRYDLACELFQELK 468



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 169/419 (40%), Gaps = 59/419 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAI 301
            ++ YNSM+ +L    Q+E +  +  EM  +G    +T  +   ++AF     +  A+ +
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
              M +   +        ++    +      A  LF+++++ +  P++ TYT L+ G  +
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGK 312

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM----------- 409
              + EA   ++EM  +  KPD V  N M+  L K G+  D +KLFE M           
Sbjct: 313 AGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVT 372

Query: 410 -------------------------KAKGPSPNVRSYTIMIWKFCKQN------------ 432
                                    K  G SP+  +Y+I+I  FCK N            
Sbjct: 373 YNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEM 432

Query: 433 --------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                    A Y  LI   G  +R D+  +L +E++E         Y  +IK +      
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+A+ ++ EM + G  P ++ YN +M    +    +       +M   GC PD NSY ++
Sbjct: 493 DDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNII 552

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + GL        A + L  M    +K   + YN   + LS AG      EL ++M   G
Sbjct: 553 LNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALG 611



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 145/334 (43%), Gaps = 18/334 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY  ++  LG+A + +       EM  E            +N    A      + +FE M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 306 NKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
                   V T N +++ L  SK    E    F+++K    +P+  TY++L+ G+C+   
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNR 421

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  +  EM +KGF P   A+  +++ L K  +   A +LF+ +K    S + R Y +
Sbjct: 422 IEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 481

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI                  G   R+D   +L  EM + GC P+   YNAL+  +    M
Sbjct: 482 MI---------------KHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACM 526

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+   ++M   G  P I++YN+I+    +TG      ++   M      PD  SY  
Sbjct: 527 LDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNT 586

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           ++  L       EA + ++EM   G +  ++ Y+
Sbjct: 587 VLSALSHAGMFEEAAELMKEMNALGFEYDLITYS 620



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S++  LG+A++++    + +E+ E  G  S   + + +     A   
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
             A+ +F+ M+K      V   N L+  L R+ +  EA     K++ H   P++ +Y ++
Sbjct: 493 DDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNII 552

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G  +      A  +   M +   KPD V++N +L  L   G   +A +L + M A G 
Sbjct: 553 LNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612

Query: 415 SPNVRSYT 422
             ++ +Y+
Sbjct: 613 EYDLITYS 620



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAV 488
           + + + Y  LI       +   ++ +++EM     C    +  + +I+++   KM  +A+
Sbjct: 120 QHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAI 179

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGG 547
            I+ ++     +PT   YN ++      G YE   ++++EM   G C PD  +Y+ LI  
Sbjct: 180 TIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISA 239

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
                R   A + L EM E GM+     Y    +   +    +    L ++MR+
Sbjct: 240 FCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRY 293



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           K G   N   YN++MS L RA   +  ++ + +M E G L  + ++ I +N  A      
Sbjct: 504 KLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ +   M     K    + N +L  L  + + +EA  L  ++    F  +L TY+ +L
Sbjct: 564 RAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSIL 623

Query: 356 GGWCRV 361
               +V
Sbjct: 624 EAIGKV 629


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 184/395 (46%), Gaps = 29/395 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      TY ++MS LGR    E + S+L EM E+ L  +++ +   ++A    +   +A
Sbjct: 324 GLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQA 383

Query: 299 VAIFELMNKYKFKAGVD----TINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTV 353
           + + + M    F  G D    T + L+  L +    +EA+ LL +  +    PNL++YT 
Sbjct: 384 LVVLKQM----FAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTS 439

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G+C    ++ A  +  EM+++G  PDVV    ++ GL+  G+ S+A+ + E M A+ 
Sbjct: 440 LIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQ 499

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+               A +Y  LI+G   ++ +    +L++EM E+   PD   Y  
Sbjct: 500 LLPD---------------ANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTT 544

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI      +  DEA +I++ M + G  P +  YN ++K Y Q G      +    M + G
Sbjct: 545 LIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVG 604

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             PD+ +YT LIGG   Q     A   L +M+++  +  V+ Y+       + G +   +
Sbjct: 605 RIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAE 664

Query: 594 ELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
            L   M   G F   NV+          +++KD++
Sbjct: 665 CLFGSMESQGLF--PNVITY--TILIGSLFKKDKV 695



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 159/377 (42%), Gaps = 32/377 (8%)

Query: 246 RTYNSMMSILGRARQFETMVSM----LEEMGEKGLLSMET------------FKIAMNAF 289
           + Y+ M++    A  + T V +    LE + EKGL  +E             + + ++ +
Sbjct: 245 KLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGY 304

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNL 348
               +  + + +   M        V T   L+  LGR   L K A LL +  + R  PN+
Sbjct: 305 CRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNV 364

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
             Y  ++   C+ ++  +A  V  +M   G  PD +  + ++ GL + G+  +A +L   
Sbjct: 365 QIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRE 424

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
                 +PN+ SYT +I  FC +   +               +  +LL EM ERG  PD 
Sbjct: 425 TTRWELNPNLSSYTSLIHGFCVRGEVI---------------VASNLLVEMMERGHTPDV 469

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +T+ ALI  + +     EA+ + ++M      P  + YN+++    +       R + +E
Sbjct: 470 VTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEE 529

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M+ +   PD   YT LI G I  +   EA K  E M +KG+   V+ YN       + G 
Sbjct: 530 MLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGM 589

Query: 589 SYVLDELAQKMRFSGKF 605
                E    MR  G+ 
Sbjct: 590 MNEAVECMSTMRKVGRI 606



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 41/366 (11%)

Query: 244 NSRTYNSMMSILGRARQFETMVS--MLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVA 300
           N  +Y S+  I G   + E +V+  +L EM E+G    + TF   ++    A +  +A+ 
Sbjct: 433 NLSSYTSL--IHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALL 490

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           + E M   +     +  N L+  L + K LP    L+ + L+    P+   YT L+ G+ 
Sbjct: 491 VREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFI 550

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R ++L EA +++  M  KG  PDVV +N M++G  + G  ++A++    M+  G  P+  
Sbjct: 551 RNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEF 610

Query: 420 SYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +YT +I  +                    C+ N   Y+ LI G+      D    L   M
Sbjct: 611 TYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSM 670

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP---TIHTY--------NM 508
           E +G  P+ +TY  LI  +  +     A   ++ M+ +   P   T+H+           
Sbjct: 671 ESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMAS 730

Query: 509 IMKSYFQTGNYEMGR----KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           I+ S+  +     G+     ++  ++   C P +++Y  +I  L   +  GEA     +M
Sbjct: 731 IISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKM 790

Query: 565 LEKGMK 570
             KG K
Sbjct: 791 ANKGYK 796



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 141/361 (39%), Gaps = 37/361 (10%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           ++  YN ++S L + +      +++EEM E+ +   +  +   ++ F   +   +A  IF
Sbjct: 503 DANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIF 562

Query: 303 ELMNKYKFKAGV-----------------DTINCLLENLGRSKLPKE------------- 332
           E M +      V                 + + C+       ++P E             
Sbjct: 563 EFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQ 622

Query: 333 ------AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                   LL D +K R  PN+  Y+ L+ G+C++ +   A  ++  M  +G  P+V+ +
Sbjct: 623 GNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITY 682

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
            I++  L K  K   A   FE M     SPN  +   ++   C   A++ +   +   N 
Sbjct: 683 TILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNL 742

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
                + D+ + +    C P    YNA+I  + I  M  EA+ +  +M   G+KP   T+
Sbjct: 743 HGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATF 802

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++  +   G     R +     +R      + Y +L    + +    E Y   +  LE
Sbjct: 803 LSLLYGFCSVGKSREWRTILPNEFQRDELEVASRYKILFDQYVVKSVGCEVYSVFQLYLE 862

Query: 567 K 567
           +
Sbjct: 863 E 863



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 20/243 (8%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A ++++EM+ +    D  +  +M+ GL   G     +KL E     G  PN   Y ++I
Sbjct: 242 DARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLI 301

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             +C++                        Y  L++  G +  ++ +  LL EM ER  P
Sbjct: 302 DGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLP 361

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+   YN++I  +   +   +A+ + K+M   G  P   T++ ++    Q G  +   ++
Sbjct: 362 PNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERL 421

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             E  R    P+ +SYT LI G   +     A   L EM+E+G    V+ +      L  
Sbjct: 422 LRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVV 481

Query: 586 AGR 588
           AG+
Sbjct: 482 AGQ 484



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%)

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+A ++Y EM+        ++  ++++     G  E G K+ +     GC P+   Y VL
Sbjct: 241 DDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVL 300

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           I G   +   G     L EM  KG+   V+ Y    + L R G    +  L  +MR
Sbjct: 301 IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMR 356


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 194/461 (42%), Gaps = 51/461 (11%)

Query: 174 STADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFC 233
           ST +P   E V K+   L S      + L      L  + VV++L+  ++      RFF 
Sbjct: 42  STTNPFP-ELVSKISTILSSPKWEHSSELCHLSPKLKPHHVVNILQTHKNTDS-VLRFFF 99

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQF--------------------ETMVSMLEEMGE 273
           W   +  F H+   + SM++ L R R F                    + +   L E+  
Sbjct: 100 WISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINS 159

Query: 274 K-----GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           K      L S  T  I +  F      +    ++  M     +  + T N ++  L +  
Sbjct: 160 KYDFGYTLCSFTTLLIQLGKFDMVDLARD---MYIKMLNSGIRPSLLTFNTMINILCKKG 216

Query: 329 LPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
             +EA+L+   + ++   PN  TYT L+ G CR  NL  A  +++ M+  G  P+ V ++
Sbjct: 217 RVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYS 276

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
            ++ GL   G+  +A+ + E M  KG  P V +YTI +   C                  
Sbjct: 277 TLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKR 336

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               N   +T LI+G     + +I   L  +M   G  P  +TYNALI  + ++   + A
Sbjct: 337 GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETA 396

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             I+K M+  G  P+  TYN I+K +   G+ +    ++D+M++ G  P+  +Y  LI G
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              Q     A + LE M   G+K     Y +  +  SR G+
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N +T+ +++S L R  +FE  + +  +M   GL+ +  T+   +N        +
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFE 394

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A  IF+ M  +       T N +++        ++A ++FDK LK   +PN+ TY  L+
Sbjct: 395 TAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+  NL  A R+   M   G KPD   +  ++ G  + GK   A  LF  M   G S
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS 514

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN                  YT +I G+ N  ++D    L  +M E G  P   TYN +I
Sbjct: 515 PN---------------HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMI 559

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     EA     +MV+ G  P + TY   +    + G   +  K++ EM +R   
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619

Query: 536 PDDNSYTVLIGGLISQDRS--GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           P+  +Y+ LI GL  + R+   E Y  L  +   G +  V  Y      L   GR Y  D
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEAD 679

Query: 594 ELAQKMRFSG 603
           +L   M+  G
Sbjct: 680 QLVVSMQKKG 689



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 163/380 (42%), Gaps = 21/380 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   NS TY+++++ L    + E  + MLEEM +KG+  ++ T+ I + +   A    
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSS 324

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +AV +   M K      + T   L+  L R    + A  L+ K L     P   TY  L+
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C       A  ++  M+  G  P    +N +++    +G    A+ +F+ M   G S
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV +Y  +I+ +CKQ             N  R      LL+ M+  G  PD  TY  LI
Sbjct: 445 PNVITYNTLIYGYCKQG---------NLNNAMR------LLEIMKGNGLKPDAWTYTELI 489

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    + A  ++  M+  G  P   TY  I+  YF     +    ++ +M+  G  
Sbjct: 490 SGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNL 549

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YV 591
           P   +Y V+I G    +   EA  +  +M+++G+   V+ Y  F   L R GR+     +
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 592 LDELAQKMRFSGKFEVSNVL 611
             E+ ++  F   +  S+++
Sbjct: 610 FHEMEKRNYFPNLYTYSSLI 629



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/408 (20%), Positives = 173/408 (42%), Gaps = 44/408 (10%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           FC  GD            K G + N  TYN+++    +       + +LE M   GL   
Sbjct: 422 FCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPD 481

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLF 337
             T+   ++ F+   + + A ++F  M ++       T   +++     +K+     L +
Sbjct: 482 AWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFW 541

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
             ++    P+  TY V++ G+ +  ++ EA     +M+ +G  P+V+ +   ++GL + G
Sbjct: 542 KMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNG 601

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------------NAAV 435
           +   A K+F  M+ +   PN+ +Y+ +I+  C++                      N   
Sbjct: 602 RTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDT 661

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIY 491
           YT L+ G     R      L+  M+++G  P    Y AL+    K +K++     A+ I+
Sbjct: 662 YTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVE----SALNIF 717

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             M   GF+  +  Y  ++ +  +    E  + ++  M+ +    D+ ++TVL+ GL+ +
Sbjct: 718 YSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKE 777

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             +    K L  M  +        Y   A +LS    +  + +++Q++
Sbjct: 778 GETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           +T L+   G    +D+  D+  +M   G  P  LT+N +I ++  +    EA  I   + 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF 229

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           R    P   TY  ++  + +  N ++   ++D M++ GC P+  +Y+ LI GL S+ R  
Sbjct: 230 RYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLE 289

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA   LEEM++KG++  V  Y      L  AG S    EL  KM+  G
Sbjct: 290 EAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 170/368 (46%), Gaps = 17/368 (4%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
            K GF  +  T  S+++   +  +F+  VS+++ M   G + ++  +   +N     ++  
Sbjct: 667  KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 726

Query: 297  KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             A+ +F  M K   +A   T N L+  L  S +    A+LL D +K +  PN+  +T L+
Sbjct: 727  NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 786

Query: 356  GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              + +  NL+EA  ++ EMI +   P+V  +N ++ G    G   DA  +F++M +KG  
Sbjct: 787  DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCF 846

Query: 416  PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            P+V +Y  +I  FCK                +R++    L  EM  +G   D  TYN LI
Sbjct: 847  PDVVTYNTLITGFCKS---------------KRVEDGMKLFCEMTYQGLVGDAFTYNTLI 891

Query: 476  KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     + A +++  MV  G  P I TYN+++      G  E    + +++ +    
Sbjct: 892  HGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD 951

Query: 536  PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
             D  +Y ++I GL   D+  EA+     +  KG+K   + Y    + L R G     D+L
Sbjct: 952  VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 1011

Query: 596  AQKMRFSG 603
             ++M+  G
Sbjct: 1012 CRRMKEDG 1019



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 34/369 (9%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++++ +  +F+ ++ +  +M   G+   + +F I ++ F        A+A+   M 
Sbjct: 607 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMM 666

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLM 365
           K  F+  + T+  LL    +    +EA  L D +    F PN+  Y  ++ G C+ ++L 
Sbjct: 667 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 726

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  V+  M  KG + D V +N ++ GL   G+ +DA +L   M  +   PNV  +T +I
Sbjct: 727 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 786

Query: 426 WKFCKQ--------------------NAAVYTCLITGF------GNRRRMDIVYDLLKEM 459
             F K+                    N   Y  LI GF      G+ + M   +DL   M
Sbjct: 787 DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM---FDL---M 840

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             +GC PD +TYN LI      K  ++ ++++ EM   G      TYN ++  Y Q G  
Sbjct: 841 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKL 900

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            + +KV++ M+  G  PD  +Y +L+  L +  +  +A   +E++ +  M   ++ YN  
Sbjct: 901 NVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNII 960

Query: 580 AADLSRAGR 588
              L R  +
Sbjct: 961 IQGLCRTDK 969



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 158/363 (43%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++     R++ET++   ++M   G+   + +F I ++ F        A+++   M 
Sbjct: 74  FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMM 133

Query: 307 KYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++  + T   LL      +++     L+   +K  + PN+  Y  L+ G C+   L 
Sbjct: 134 KLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELN 193

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  + NEM  KG   DVV +N +L GL   G+ SDA ++   M  +  +P+V ++T +I
Sbjct: 194 IALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALI 253

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F KQ                    N   Y  +I G     R+         M  +GC 
Sbjct: 254 DVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCF 313

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYN LI      +M DE +++++ M   GF   I TYN ++  Y Q G   +   +
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI 373

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M+ R   PD  ++ +L+ GL        A    ++M E      ++ YN     L +
Sbjct: 374 FCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCK 433

Query: 586 AGR 588
           A +
Sbjct: 434 ADK 436



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 148/331 (44%), Gaps = 17/331 (5%)

Query: 260 QFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           +FE   ++  EM   + L S+  F   + A A  +  +  +   + M  Y     + +  
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110

Query: 319 CLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+    R S+L     +L   +K  + P++ T+  LL G+C V  + +A  +   M+  
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G++P+VV +N +++GL K G+ + A++L   M+ KG   +V                 Y 
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADV---------------VTYN 215

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+TG     R      +L++M +R   PD +T+ ALI +   Q   DEA  +YKEM++S
Sbjct: 216 TLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQS 275

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
              P   TYN I+      G     +K +D M  +GC P+  +Y  LI G        E 
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEG 335

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            K  + M  +G  A +  YN       + G+
Sbjct: 336 MKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 15/260 (5%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +K  F P++ T   LL G+C+     EA  + + M   GF P+VV +N ++ GL K    
Sbjct: 666 MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDL 725

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           ++A+++F  M+ KG                + +A  Y  LI+G  N  R      LL++M
Sbjct: 726 NNALEVFYCMEKKG---------------IRADAVTYNTLISGLSNSGRWTDAARLLRDM 770

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            +R   P+ + + ALI     +    EA  +YKEM+R    P + TYN ++  +   G  
Sbjct: 771 VKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCL 830

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
              + ++D M+ +GC PD  +Y  LI G     R  +  K   EM  +G+      YN  
Sbjct: 831 GDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTL 890

Query: 580 AADLSRAGRSYVLDELAQKM 599
                +AG+  V  ++  +M
Sbjct: 891 IHGYCQAGKLNVAQKVFNRM 910



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 55/353 (15%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           K G+  N   YN+++  L +  +    + +L EM +KGL                     
Sbjct: 169 KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGL--------------------- 207

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
                         A V T N LL  L  S +    A++L D +K    P++ T+T L+ 
Sbjct: 208 -------------GADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            + +  NL EA  ++ EMI     P+ V +N ++ GL   G+  DA K F++M +KG  P
Sbjct: 255 VFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFP 314

Query: 417 NVRSYTIMIWKFCKQ------------------NAAVYT--CLITGFGNRRRMDIVYDLL 456
           NV +Y  +I  FCK                   NA ++T   LI G+    ++ +  D+ 
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
             M  R   PD +T+  L+  + +    + A+  + +M  S     I  YN+++    + 
Sbjct: 375 CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              E   +++  +   G  PD  +YT++I GL       EA + +  M E+G+
Sbjct: 435 DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 148/333 (44%), Gaps = 24/333 (7%)

Query: 211  HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
            +N V++ L + R        F+C   +K G   ++ TYN+++S L  + ++     +L +
Sbjct: 712  YNTVINGLCKNRDLNNALEVFYCM--EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRD 769

Query: 271  MGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
            M ++ +     F  A+ + F       +A  +++ M +      V T N L+        
Sbjct: 770  MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 829

Query: 330  PKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
              +A+ +FD +  +   P++ TY  L+ G+C+ K + +  +++ EM  +G   D   +N 
Sbjct: 830  LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 389  MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
            ++ G  + GK + A K+F  M   G SP++ +Y I++   C                   
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 949

Query: 432  ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
               +   Y  +I G     ++   + L + +  +G  PD + Y  +I  +  + +  EA 
Sbjct: 950  MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 1009

Query: 489  RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            ++ + M   GF P+   Y+  ++ ++ + + E+
Sbjct: 1010 KLCRRMKEDGFMPSERIYDETLRDHYTSLSAEL 1042



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 59/319 (18%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ EM+     P +V    +L  + K+ K    I L+  M+  G S ++ S+TI+I
Sbjct: 587 DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 646

Query: 426 WKFC--------------------KQNAAVYTCLITGF--GNR----------------- 446
             FC                    + +      L+ GF  GNR                 
Sbjct: 647 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFV 706

Query: 447 ----------------RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                           R ++   ++   ME++G   D +TYN LI  +       +A R+
Sbjct: 707 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARL 766

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            ++MV+    P +  +  ++ ++ + GN    R ++ EMIRR   P+  +Y  LI G   
Sbjct: 767 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 826

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG----KFE 606
               G+A    + M+ KG    V+ YN       ++ R     +L  +M + G     F 
Sbjct: 827 HGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFT 886

Query: 607 VSNVLARWAETTKNRVYRK 625
            + ++  + +  K  V +K
Sbjct: 887 YNTLIHGYCQAGKLNVAQK 905



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 24/260 (9%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ EM+     P +V    +L     + +    I   + M+  G S ++ S+TI+I
Sbjct: 54  DAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILI 113

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             FC+                     +   +  L+ GF    R+   + L+  M + G  
Sbjct: 114 HCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYE 173

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ + YN LI  +      + A+ +  EM + G    + TYN ++     +G +    ++
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M++R   PD  ++T LI   + Q    EA +  +EM++  +    + YN     L  
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293

Query: 586 AGRSY----VLDELAQKMRF 601
            GR Y      D +A K  F
Sbjct: 294 HGRLYDAKKTFDLMASKGCF 313



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  DA  LF  M    P P++  +T ++    K N               + DIV  L  
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMN---------------KFDIVIYLYH 628

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +ME  G   D  ++  LI           A+ +  +M++ GF+P+I T   ++  + Q  
Sbjct: 629 KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGN 688

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            ++    + D M   G  P+   Y  +I GL        A +    M +KG++A  + YN
Sbjct: 689 RFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYN 748

Query: 578 KFAADLSRAGR 588
              + LS +GR
Sbjct: 749 TLISGLSNSGR 759



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 69/165 (41%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           L TGF +  R +  + L  EM      P  + +  L+      +  +  +   ++M   G
Sbjct: 42  LRTGFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYG 101

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
               ++++ +++  + +         V  +M++ G  P   ++  L+ G    +R G+A+
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +  M++ G +  V+ YN     L + G   +  EL  +M   G
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG 206


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 281 TFKIAMNAFAAAKERKK-AVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           TF I    FAA++ R   AV +F  L   ++    +   N LL+ LG+S+   +A  L  
Sbjct: 128 TFPILFERFAASQRRPDIAVRLFLSLHRSHRVVQDLPLFNSLLDALGKSRHASKAASLVR 187

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
            L+ RF P++ TY  L  GWCR K+   A  +  +M + G  P    +NI+L+G  + G+
Sbjct: 188 ALERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQ 247

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A   F  MK +G             + CK +   YT +I G G   ++D    L  E
Sbjct: 248 IQHAWNFFLQMKKRGAKD----------ESCKPDIVSYTTIIHGLGVAGQLDKARKLFDE 297

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + GC P   TYNALI+++  +   ++AV ++ +MVR  + P + TY ++++     G 
Sbjct: 298 MSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGK 357

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +   K+ + M   GC P   +Y VLI
Sbjct: 358 IDRAMKLMERMKGEGCEPVVQTYNVLI 384



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 157/323 (48%), Gaps = 29/323 (8%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           N ++D L + RHA + A      A ++  F  +  TYN++     RA+     + +L +M
Sbjct: 167 NSLLDALGKSRHASKAAS--LVRALER-RFPPDVVTYNTLADGWCRAKDTSRALDLLRQM 223

Query: 272 GEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELMNKY-----KFKAGVDTINCLLENLG 325
            E G+   +T + I +  F  A + + A   F  M K        K  + +   ++  LG
Sbjct: 224 AESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLG 283

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +    +A+ LFD++ K   TP++ TY  L+   C+  N+ +A  V+++M+ K + P+VV
Sbjct: 284 VAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVV 343

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI-WKFCKQNAAVYTCLITGF 443
            + +++ GL  +GK   A+KL E MK +G  P V++Y ++I + F +       CL    
Sbjct: 344 TYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCL---- 399

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE---AVRIYKEMVRSGFK 500
                    ++ + + E+  C P+  TYN +I  M ++K  ++   A R+  EMV  G+ 
Sbjct: 400 ---------FERMSKGED--CLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYL 448

Query: 501 PTIHTYNMIMKSYFQTGNYEMGR 523
           P     N ++     TGN ++ R
Sbjct: 449 PRRFMLNRVLNGLMLTGNQQISR 471


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 172/390 (44%), Gaps = 25/390 (6%)

Query: 224 ARRPAFRFFCWAGDKP---GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSM 279
           A+   F      G+K    G +HN  TYN +++   R  Q    +++L +M + G   S+
Sbjct: 21  AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSI 80

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            T    +N +   K    AVA+ + M +  ++    T   L+  L       EA  L D+
Sbjct: 81  VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 140

Query: 340 LKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +  R   PNL TY V++ G C+  ++  A  + N+M     + DVV  N +++ L K   
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTC 438
             DA+ LF+ M+ KG  PNV +Y+ +I   C                      N   +  
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI  F    +      L  +M +R   PD  TYN+LI    +    D+A ++++ MV   
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P + TYN ++K + ++   E G +++ EM  RG   D  +YT LI GL        A 
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           K  ++M+  G+   ++ Y+     L   G+
Sbjct: 381 KVFKQMVSDGVPPDIMTYSILLDGLCNNGK 410



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 162/349 (46%), Gaps = 21/349 (6%)

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQ 334
           L S+  F   ++A A  K+    +++ E M +      + T N L+    R S++     
Sbjct: 7   LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LL   +K  + P++ T + LL G+C  K + +A  + ++M++ G++PD +    ++ GL 
Sbjct: 67  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
              K S+A+ L + M  +G  PN+ +Y +++   CK+                    +  
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  +I      R +D   +L KEME +G  P+ +TY++LI  +       +A ++  +M
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 246

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +     P + T+N ++ ++ + G +    K+ D+MI+R   PD  +Y  LI G    DR 
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 306

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +A +  E M+ K     +  YN       ++ R     EL ++M   G
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 167/383 (43%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TY  +++ L +    +   ++L +M   K    +  F   +++    +    A
Sbjct: 145 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 204

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F+ M     +  V T + L+  L    +    +QLL D ++ +  PNL T+  L+  
Sbjct: 205 LNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDA 264

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +    +EA ++ ++MI +   PD+  +N ++ G     +   A ++FE M +K   P+
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I  FCK                     +   YT LI G  +    D    + K
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G PPD +TY+ L+  +      ++A+ ++  M +S  K  I+ Y  +++   + G
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             + G  ++  +  +G  P+  +Y  +I GL S+    EAY  L++M E G       YN
Sbjct: 445 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYN 504

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                  R G      EL ++MR
Sbjct: 505 TLIRAHLRDGDKAASAELIREMR 527



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/317 (19%), Positives = 125/317 (39%), Gaps = 58/317 (18%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI----------- 388
           +K R  P++  +  LL    ++K       +  +M   G   ++  +NI           
Sbjct: 2   VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61

Query: 389 -----MLEGLLKIG-------------------KRSDAIKLFEVMKAKGPSPNVRSYTI- 423
                +L  ++K+G                   + SDA+ L + M   G  P+  ++T  
Sbjct: 62  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121

Query: 424 -------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                              M+ + C+ N   Y  ++ G   R  +D+ ++LL +ME    
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D + +N +I  +   +  D+A+ ++KEM   G +P + TY+ ++      G +    +
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +  +MI +   P+  ++  LI   + + +  EA K  ++M+++ +   +  YN       
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 301

Query: 585 RAGRSYVLDELAQKMRF 601
              R   LD+  Q   F
Sbjct: 302 MHDR---LDKAKQMFEF 315



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TY +++  L      +    + ++M   G+   + T+ I ++      + +KA
Sbjct: 355 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F+ M K + K  +     ++E + ++    +   LF  L  +   PN+ TY  ++ G
Sbjct: 415 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 474

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            C  + L EA  +  +M + G  PD   +N ++   L+ G ++ + +L   M++
Sbjct: 475 LCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 185/419 (44%), Gaps = 52/419 (12%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET--------------------MVSM 267
             +FF W   +P + HN   + SM++ L R R F                      +   
Sbjct: 133 VIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADF 192

Query: 268 LEEMGEKG----LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           L E+   G    L S  T  I +  F      + A  +++ M     +  + T N L+  
Sbjct: 193 LNEISGMGFGFSLYSCNTLLIQLAKFEMV---EGARNLYKQMLNSGIQPSLLTFNTLINI 249

Query: 324 LGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +    +EA+L+  ++ ++  +P++ TYT L+ G CR +NL  A  V++ M+ +G  P+
Sbjct: 250 LSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPN 309

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------------- 428
            V ++ ++ GL   G+  +A+ + E M  KG  P V +YT+ I                 
Sbjct: 310 SVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVA 369

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                 C+ N   YT LI+G     ++++   L  +M + G  P+ +TYNALI  + +  
Sbjct: 370 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 429

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
               A++I+  M   G      TYN I+K     G+ E    ++++M++ G  P   +Y 
Sbjct: 430 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 489

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQ 597
            LI G +++     A + L+ M E G +     YN+  +  S+ G+    S+   E+ +
Sbjct: 490 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVE 548



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 164/353 (46%), Gaps = 17/353 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N +TY +++S L R  + E  + +  +M ++GL+ +  T+   +N         
Sbjct: 373 KRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFS 432

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
            A+ IF  M  +   A   T N +++ L      ++A +LF+K LK    P + TY  L+
Sbjct: 433 TALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 492

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+    N+  A R+ + M + G +PD   +N ++ G  K GK   A   F+ M   G +
Sbjct: 493 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 552

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  SYT                LI G     ++DI   LL+ MEE GC P+  +YNA+I
Sbjct: 553 PNPVSYTT---------------LIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVI 597

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +  +    EA +I  +M   G  P + TY  ++    + G  +   K++ +M +R C 
Sbjct: 598 NGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 657

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           P+  +Y+ LI GL  + ++ EA   L+EM  KG+    + +          GR
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGR 710



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 159/354 (44%), Gaps = 17/354 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   NS TY+++++ L    + +  + MLEEM EKG+  ++ T+ + + A  A +  +
Sbjct: 303 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 362

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A+ +   M K   +  V T   L+  L R  KL     L    LK    PN  TY  L+
Sbjct: 363 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 422

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C       A ++++ M   G   +   +N +++GL   G    A+ LFE M   GP 
Sbjct: 423 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 482

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P V                 Y  LI G+  +  ++    LL  M+E GC PD  TYN L+
Sbjct: 483 PTV---------------VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 527

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                    + A   ++EMV  G  P   +Y  ++  + + G  ++   + + M   GC 
Sbjct: 528 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCN 587

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           P+  SY  +I GL  ++R  EA K  ++M E+G+   V+ Y      L R GR+
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRT 641



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 180/413 (43%), Gaps = 48/413 (11%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERK 296
           K G   N+ TYN++++ L    +F T + +   M G   L + +T+   +       + +
Sbjct: 408 KEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIE 467

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KA+ +FE M K      V T N L+   L +  +   A+LL    ++   P+  TY  L+
Sbjct: 468 KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 527

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+ +   L  A   + EM++ G  P+ V++  +++G  K GK   A+ L E M+  G +
Sbjct: 528 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCN 587

Query: 416 PNVRSYTIMI------------WKFCKQ--------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV SY  +I             K C +        N   YT LI G     R    + +
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +ME+R C P+  TY++LI  +  +   DEA  + KEM R G  P   T+  ++  +  
Sbjct: 648 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV 707

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ---------DRSGEAYKY------ 560
            G  +    +   M+  GC P+  +Y+VL+ GL  +          +    Y +      
Sbjct: 708 LGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKD 767

Query: 561 ---------LEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELAQKMRFSG 603
                    L  M E G + P LD Y+   + L R GR Y  ++L + M+  G
Sbjct: 768 VNFEIVSNLLARMSEIGCE-PTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 819



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 175/408 (42%), Gaps = 48/408 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y +++    +  + +  +S+LE M E G   ++E++   +N  +      +A
Sbjct: 550 GLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEA 609

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
             I + M +      V T   L++ L R+   + A  +F D  K +  PNL TY+ L+ G
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 669

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     EA  +  EM  KG  PD V    +++G + +G+   A  L   M   G  PN
Sbjct: 670 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPN 729

Query: 418 VRSYTIM---------------------IWKF-----------------------CKQNA 433
            R+Y+++                     ++ F                       C+   
Sbjct: 730 YRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTL 789

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
             Y+ L++G   + R      L+K+M+ERG CP   + Y+ LI   K  ++ D A++I+ 
Sbjct: 790 DTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEV-DHALKIFH 848

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            +   GF+  +  Y  ++ +  + G  E  + ++D M+ +    D+  +TVL+ GL+ + 
Sbjct: 849 SIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEG 908

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
                 K L  M  K     +  Y     +LSR G+S   + LA K++
Sbjct: 909 ELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 956



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 44/242 (18%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--SPNVRSYTIMIWKFCKQNA- 433
           K   P + AH++    ++ + K ++++  F    +K P    N+  +  M+ +  +    
Sbjct: 109 KQLSPQLKAHHV--AEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVF 166

Query: 434 ----AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                +   +I    N   +  V D L E+   G      + N L+  +   +M + A  
Sbjct: 167 APADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARN 226

Query: 490 IYKEMVRSGFKPTIHTYN----------------MIMKSYFQ------------------ 515
           +YK+M+ SG +P++ T+N                +I+   FQ                  
Sbjct: 227 LYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHC 286

Query: 516 -TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
              N ++   V+D M++ GC P+  +Y+ LI GL ++ R  EA   LEEM+EKG++  V 
Sbjct: 287 RNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 346

Query: 575 DY 576
            Y
Sbjct: 347 TY 348


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 170/383 (44%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++++L    Q    V ++E+M   G+ L    F   M+ F    +   A
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F+ M K    A   T   L+  L R+   KEA+ +  +++ +    +  TYTVL+ G
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+V  + EA  V N+M+ K   P+VV +  + +GL K G    A +L   M +KG   N
Sbjct: 435 YCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN 494

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I   CK                     +   YT +I      + +D  + LL+
Sbjct: 495 IFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQ 554

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM ++G  P  +TYN L+    +    +   R+ + M+     P   TYN +MK Y    
Sbjct: 555 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEK 614

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +++  M+ +   P++N+Y +LI G        EA  +  EM+EKG +     YN
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYN 674

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                L++  +      L +KMR
Sbjct: 675 ALIRLLNKKKKFTEARRLFEKMR 697



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 162/367 (44%), Gaps = 23/367 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   ++  + ++MS   R        +  +EM ++GL +   T+   +N    A E K+A
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             + + M          T   L++   +     EA L+ +K+ + R TPN+ TYT L  G
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++  A  + +EM  KG + ++  +N ++ GL K G    A++    M   G  P+
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT +I   C                    K     Y  L+ GF    R++    LL+
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M E+   P+  TYN+L+K   I+K       IYK M+     P  +TYN+++K + +  
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +       EMI +G     +SY  LI  L  + +  EA +  E+M +  + A    YN
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYN 709

Query: 578 KFAADLS 584
            F  DLS
Sbjct: 710 -FYIDLS 715



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 159/378 (42%), Gaps = 34/378 (8%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           FC  GD            K G A +  TY ++++ L RA + +    +L+EM +KGL + 
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLF 337
             T+ + ++ +    +  +A  +   M + +    V T   L + L +   +    +LL 
Sbjct: 425 AVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLH 484

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           +        N+ TY  L+ G C+  NL +A R   +M + G KPDV  +  ++  L +  
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSK 544

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYT 437
           +   A  L + M  KG  P + +Y +++  FC                      N   Y 
Sbjct: 545 ELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYN 604

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+  +   + M    ++ K M  +   P+  TYN LIK     +   EA+  + EM+  
Sbjct: 605 SLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEK 664

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           GF+ T  +YN +++   +   +   R+++++M +     + + Y   I    ++D     
Sbjct: 665 GFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLEST 724

Query: 558 YKYLEEMLEKGMKAPVLD 575
               +E++E  +   + D
Sbjct: 725 LALCDELVEVTLVKSIAD 742



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 24/307 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N LL+ L  +   K+A  LFD++     P++ TY +++ G+C +  L  A ++ +EM  +
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G + + VA+  ++  L   G+ SDA+++ E M   G   +   +T ++  FC++      
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                         +   YT LI G      +     +L+EME++G   D +TY  LI  
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             K+ KM  EA  ++ +MV+    P + TY  +     + G+     ++  EM  +G   
Sbjct: 435 YCKVGKM-TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL 493

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +Y  LI GL       +A + + +M E G+K  V  Y      L ++        L 
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553

Query: 597 QKMRFSG 603
           Q+M   G
Sbjct: 554 QEMLDKG 560



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 26/256 (10%)

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A LL    ++  +P+  +   +L   CR+  L EA +++ E+ +K    +  ++NI+L+ 
Sbjct: 211 APLLLRLRQYGISPSPESCNAVL---CRLP-LDEAVQLFQELPEK----NTCSYNILLKA 262

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L   G+  DA +LF+ M +    P+V +Y IM+  +C  +                ++  
Sbjct: 263 LCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLS---------------ELETA 304

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             LL EM  RG   + + Y ++I L+  +    +AVR+ ++MV  G       +  +M  
Sbjct: 305 IKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG 364

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + + G+    R  +DEM +RG   D  +YT LI GL       EA + L+EM +KG+   
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424

Query: 573 VLDYNKFAADLSRAGR 588
            + Y        + G+
Sbjct: 425 AVTYTVLIDGYCKVGK 440



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 127/316 (40%), Gaps = 67/316 (21%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           + +Y      ++ N +L      +LP  EA  LF +L  +   N  +Y +LL   C    
Sbjct: 217 LRQYGISPSPESCNAVL-----CRLPLDEAVQLFQELPEK---NTCSYNILLKALCTAGR 268

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A ++++EM      PDVV + IM+ G   + +   AIKL   M A+G   N  +YT 
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I   C +                    +AAV+T +++GF  +  +    +   EM++RG
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              DG+T                                   Y  ++    + G  +   
Sbjct: 386 LAADGVT-----------------------------------YTALINGLCRAGELKEAE 410

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +V  EM  +G   D  +YTVLI G     +  EA+    +M++K +   V+ Y   +  L
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 584 SRAGRSYVLDELAQKM 599
            + G     +EL  +M
Sbjct: 471 CKQGDVCAANELLHEM 486


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 173/386 (44%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  + +TY+S+M  LG+ R  ++++ +L+EM   GL  ++ TF I +     A +  +A
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 277

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             I + M+       V T   L++ L  ++    A+ +F+K+K  R  P+  TY  LL  
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDR 337

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +   ++L    + W+EM   G  PDVV   I+++ L K G   +A    +VM+ +G  PN
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I                        K  A  Y   I  +G         +  +
Sbjct: 398 LHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 457

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M+ +G  P+ +  NA +  +       EA +I+  +   G  P   TYNM+MK Y + G
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG 517

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   K+  EM+  GC PD      LI  L   DR  EA+K    M E  +K  V+ YN
Sbjct: 518 EIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYN 577

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              A L + G+     EL + M   G
Sbjct: 578 TLLAGLGKNGKIQEAIELFEGMVQKG 603



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 155/322 (48%), Gaps = 24/322 (7%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            TYN ++  L  A   E    +  ++   G +  + T+   ++A+  + +  +   +++ M
Sbjct: 787  TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
            + ++ +A   T N ++  L ++    +A  L +D +  R F+P   TY  L+ G  +   
Sbjct: 847  STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906

Query: 364  LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
            L EA +++  M+D G +P+   +NI++ G  K G+   A  LF+ M  +G  P++++Y++
Sbjct: 907  LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966

Query: 424  MIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEME-ER 462
            ++   C                      +   Y  +I G G   R++    L  EM+  R
Sbjct: 967  LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSR 1026

Query: 463  GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            G  PD  TYN+LI  + I  M +EA +IY E+ R+G +P + T+N +++ Y  +G  E  
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086

Query: 523  RKVWDEMIRRGCCPDDNSYTVL 544
              V+  M+  G  P+  +Y  L
Sbjct: 1087 YAVYQTMVTGGFSPNTGTYEQL 1108



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 23/296 (7%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
            T N L+  L  + + + AQ +F ++K     P++ TY  LL  + +   + E   ++ EM
Sbjct: 787  TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846

Query: 375  IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKF----- 428
                 + + + HNI++ GL+K G   DA+ L+ ++M  +  SP   +Y  +I        
Sbjct: 847  STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906

Query: 429  ---------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                           C+ N A+Y  LI GFG     D    L K M + G  PD  TY+ 
Sbjct: 907  LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966

Query: 474  LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM-IRR 532
            L+  + +    DE +  +KE+  SG  P +  YN+I+    ++   E    +++EM   R
Sbjct: 967  LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSR 1026

Query: 533  GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            G  PD  +Y  LI  L       EA K   E+   G++  V  +N      S +G+
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 143/315 (45%), Gaps = 22/315 (6%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           + ET    + A     + ++   +F+LM K   K   +T   + ++L      K+A    
Sbjct: 117 TTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYAL 176

Query: 338 DKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            K++   F  N  +Y  L+    + +   EA  V+  MI +GF+P +  ++ ++ GL   
Sbjct: 177 RKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGL--- 233

Query: 397 GKRSD---AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
           GKR D    + L + M+  G  PNV ++TI I                  G   +++  Y
Sbjct: 234 GKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVL---------------GRAGKINEAY 278

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           ++LK M++ GC PD +TY  LI  +   +  D A  ++++M     KP   TY  ++  +
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRF 338

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
               + +  ++ W EM + G  PD  ++T+L+  L      GEA+  L+ M ++G+   +
Sbjct: 339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398

Query: 574 LDYNKFAADLSRAGR 588
             YN     L R  R
Sbjct: 399 HTYNTLICGLLRVHR 413



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 163/378 (43%), Gaps = 17/378 (4%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           +F +F          H + T N M+  L    + E M  + + M ++ +     T+    
Sbjct: 101 SFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIF 160

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFT 345
            + +     K+A      M ++ F     + N L+  L +S+   EA  ++ ++    F 
Sbjct: 161 KSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFR 220

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+L TY+ L+ G  + +++     +  EM   G KP+V    I +  L + GK ++A ++
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 280

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M  +G  P+V +YT++I   C                 R++D   ++ ++M+     
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALC---------------TARKLDCAKEVFEKMKTGRHK 325

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY  L+      +  D   + + EM + G  P + T+ +++ +  + GN+      
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDT 385

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            D M  +G  P+ ++Y  LI GL+   R  +A +    M   G+K     Y  F     +
Sbjct: 386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGK 445

Query: 586 AGRSYVLDELAQKMRFSG 603
           +G S    E  +KM+  G
Sbjct: 446 SGDSVSALETFEKMKTKG 463



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 178/398 (44%), Gaps = 33/398 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N+ +YN ++ +L ++R     + +   M  +G   S++T+   M      ++    
Sbjct: 183 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSV 242

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + + M     K  V T    +  LGR+    EA  +  ++      P++ TYTVL+  
Sbjct: 243 MGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 302

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSP 416
            C  + L  A  V+ +M     KPD V +  +L+      +  D++K F   M+  G  P
Sbjct: 303 LCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD-NRDLDSVKQFWSEMEKDGHVP 361

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI- 475
           +V ++TI++   CK            FG        +D L  M ++G  P+  TYN LI 
Sbjct: 362 DVVTFTILVDALCKAG---------NFGE------AFDTLDVMRDQGILPNLHTYNTLIC 406

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L+++ ++ D+A+ ++  M   G KPT +TY + +  Y ++G+     + +++M  +G  
Sbjct: 407 GLLRVHRL-DDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 465

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE- 594
           P+  +    +  L    R  EA +    + + G+    + YN      S+ G    +DE 
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE---IDEA 522

Query: 595 ---LAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRIE 629
              L++ M    + +V  V      +  N +Y+ DR++
Sbjct: 523 IKLLSEMMENGCEPDVIVV-----NSLINTLYKADRVD 555



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 30/375 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +S TYN MM    +  + +  + +L EM E G    +      +N    A    +A
Sbjct: 498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA 557

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M + K K  V T N LL  LG++   +EA  LF+ +  +   PN  T+  L   
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 617

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A ++  +M+D G  PDV  +N ++ GL+K G+  +A+  F  MK K   P+
Sbjct: 618 LCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK-KLVYPD 676

Query: 418 VRSYTIMIWKFCKQNAA----------VYTC-----------LITGFGNRRRMDIVYDLL 456
             +   ++    K +            +Y C           LI        +D      
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDE---AVRIYKEMVRS-GFKPTIHTYNMIMKS 512
           + +   G   DG +   L+ +++     +    A  ++++  +  G +P + TYN+++  
Sbjct: 737 ERLVANGICRDGDS--ILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGG 794

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             +    E+ + V+ ++   GC PD  +Y  L+       +  E ++  +EM     +A 
Sbjct: 795 LLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEAN 854

Query: 573 VLDYNKFAADLSRAG 587
            + +N   + L +AG
Sbjct: 855 TITHNIVISGLVKAG 869



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 25/382 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ LG+  + +  + + E M +KG   +  TF    +      E   A+ +   M
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                   V T N ++  L ++   KEA   F ++K    P+  T   LL G  +   + 
Sbjct: 635 MDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIE 694

Query: 366 EAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +A ++  N + +   +P  +    ++  +L      +A+   E + A G   +  S  + 
Sbjct: 695 DAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVP 754

Query: 425 IWKF-CKQNAA---------------------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I ++ CK N                        Y  LI G      ++I  D+  +++  
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           GC PD  TYN L+         DE   +YKEM     +    T+N+++    + GN +  
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874

Query: 523 RKVW-DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             ++ D M  R   P   +Y  LI GL    R  EA +  E ML+ G +     YN    
Sbjct: 875 LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILIN 934

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
              +AG +     L ++M   G
Sbjct: 935 GFGKAGEADAACALFKRMVKEG 956


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 16/338 (4%)

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           +L EM ++   ++ T+   +          +A+ + +LM +        T   L++   +
Sbjct: 264 VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            K  KEA+L+F+ +      PN  TYT L+ G+ +  N+ EA R+ +EMI +G K +VV 
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N M+ G+ K G+ + A+ LF  M   G  P+  +Y ++I  + K +     C       
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKAC------- 436

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
                   +LL EM+ R   P   TY+ LI  +       +A  +  +M+R+G KP +  
Sbjct: 437 --------ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFM 488

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  ++K+Y Q   YEM  ++   MI  G  PD   Y  LI GL    +  EA   L +M 
Sbjct: 489 YGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMG 548

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EKG+K     Y  F    S++G   V +   + M  SG
Sbjct: 549 EKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 170/368 (46%), Gaps = 22/368 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+ +  L +    +  + + + M EKGL     T+ + ++ F   K  K+A  IF
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIF 334

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E M          T   L++   +    +EA  + D++  R    N+ TY  ++GG  + 
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKA 394

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  ++NEM+  G +PD   +N++++G LK    + A +L   MKA+  +P+  +Y
Sbjct: 395 GEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454

Query: 422 TIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           +++I   C                    K N  +Y  LI  +    R ++  +LLK M  
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA 514

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD   YN LI  +   K  +EA  +  +M   G KP  HTY   +  Y ++G  ++
Sbjct: 515 NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQV 574

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             + + +M+  G  P++  YT+LI G      + EA    + MLEKG+   +  Y+    
Sbjct: 575 AERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 582 DLSRAGRS 589
            LS+ G++
Sbjct: 635 SLSKNGKT 642



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 189/421 (44%), Gaps = 26/421 (6%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           ++ L+VD   + + ++     F   +    G   N  TY +++    +    E  + + +
Sbjct: 313 TYTLLVDGFCKQKRSKEAKLIF--ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKD 370

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS- 327
           EM  +GL L++ T+   +   A A E  KA+++F  M     +    T N L++   +S 
Sbjct: 371 EMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSH 430

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            + K  +LL +    + TP+  TY+VL+ G C   +L +A  V ++MI  G KP+V  + 
Sbjct: 431 DMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYG 490

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            +++  ++  +   AI+L ++M A G  P++         FC      Y CLI G    +
Sbjct: 491 TLIKAYVQESRYEMAIELLKIMIANGVLPDL---------FC------YNCLIIGLCRAK 535

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +++    LL +M E+G  P+  TY A I L         A R +K+M+ SG  P    Y 
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYT 595

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++K +   GN       +  M+ +G  PD  +Y+ +I  L    ++ EA     + L+ 
Sbjct: 596 ILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT 655

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG-------KFEVSNVLARWAETTKN 620
           G+   V  YN   +   + G      +L  +M  +G          + N L +  E TK 
Sbjct: 656 GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKA 715

Query: 621 R 621
           R
Sbjct: 716 R 716



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 186/416 (44%), Gaps = 48/416 (11%)

Query: 231 FFCWAGDK---PGFAHNS-----RTYNS--------MMSILGRARQ--FETMVSMLEEMG 272
           FF W+  K   P + H+      R  NS        M+  L + R+   E + S++    
Sbjct: 106 FFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYR 165

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           E G  ++  F I ++ F       +A ++F       F     T+ C   NL R  L   
Sbjct: 166 EFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGF---FPTLICC-NNLMRDLLKAN 221

Query: 333 AQLLFDKL-----KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              LF K+     + +  P++ TYT ++   C+V ++++   V +EM +K  KP++  +N
Sbjct: 222 MMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYN 280

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
             + GL + G   +A+++ ++M  KG  P+  +YT+++  FCKQ                
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               N   YT LI GF     ++    +  EM  RG   + +TYNA+I  +       +A
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + ++ EM+ +G +P   TYN+++  Y ++ +     ++  EM  R   P   +Y+VLI G
Sbjct: 401 MSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L       +A + L++M+  G+K  V  Y        +  R  +  EL + M  +G
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG 516



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 169/365 (46%), Gaps = 24/365 (6%)

Query: 265 VSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           +S  + M EKGL+  +  +   +++ +   + K+A+ +F    K      V   N L+  
Sbjct: 611 LSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             +    ++A  L+D++ H    PN+  Y  L+ G C++  + +A  +++E+ +K   PD
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPD 730

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           VV ++ +++G  K G  ++A KLF+ M +KG SP+   Y I+I    K+           
Sbjct: 731 VVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH 790

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   + + +  LI  F    ++    +L  +M ++   P+ +TY  LI      +M
Sbjct: 791 EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEM 850

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA +++ +M      P   TY  ++ SY Q GN      ++ +M  RG   D  +Y V
Sbjct: 851 MEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGV 910

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +      + +S EA K L + L +G+K     ++     L +  +   + EL  +M   G
Sbjct: 911 MASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM---G 967

Query: 604 KFEVS 608
           K E+S
Sbjct: 968 KEELS 972


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 172/394 (43%), Gaps = 38/394 (9%)

Query: 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++S +   RQ E    +L    +    S E    ++ A+    +   A  IF  M +  +
Sbjct: 112 LISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNY 171

Query: 311 KAGVDTINCLLENLGR----SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           +  + T N L+ +L R    S +    Q+L D +K    PN  ++ +L+ G+C    + +
Sbjct: 172 RPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKD 231

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A    N+M + G  PD V++N +L+ LLK     +A  L   MK+KG SPN  +Y +++ 
Sbjct: 232 ALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVC 291

Query: 427 KFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            +C+                         Y  L+ GF N  ++D  + +  EME+    P
Sbjct: 292 GYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLP 351

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TYN LI      +   E   + +EM + G K    TYN+I+K   + GN        
Sbjct: 352 DVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTL 411

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL--- 583
           D+M   G  PD  +Y  LIG      + G+A++ ++EM  KG+K      N     L   
Sbjct: 412 DKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVE 471

Query: 584 -----------SRAGRSYVLDELAQKMRFSGKFE 606
                      S + R Y+LDE++  +   G F+
Sbjct: 472 KKLDEAYNLLCSASKRGYILDEVSYGILILGYFK 505



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 168/379 (44%), Gaps = 22/379 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN +++      + +    + +EM +  +L  + T+   ++  +  ++  +  ++ E M
Sbjct: 320 TYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEM 379

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           +K   K    T N +L+ + +     EA    DK++    +P+  TY  L+G +C+   +
Sbjct: 380 DKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKM 439

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R+ +EM  KG K D    N +L  L    K  +A  L      +G   +  SY I+
Sbjct: 440 GKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGIL 499

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  + K                     +   Y  +I G    R++D   D L EM E G 
Sbjct: 500 ILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGL 559

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN +I    ++   ++A + + EM+ + FKP ++T N++++   + G  E   K
Sbjct: 560 VPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALK 619

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +++ ++ +G   D  +Y  +I  L  + +   AY  L EM  K +      Y    A L+
Sbjct: 620 LFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALT 679

Query: 585 RAGRSYVLDELAQKMRFSG 603
            AGR    +E   KM  SG
Sbjct: 680 DAGRIKEAEEFTLKMVESG 698



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 152/340 (44%), Gaps = 17/340 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ +YN+++  L + R  +    +L +M  KGL  +  T+ + +  +      K+A
Sbjct: 243 GCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEA 302

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             + E+M +      V T N L+          EA  + D++ K    P++ TY  L+ G
Sbjct: 303 TKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDG 362

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             + ++  E   +  EM  KG K + V +NI+L+ + K G  ++A    + M+  G SP+
Sbjct: 363 CSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPD 422

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  +I  +CK                 +M   + ++ EM  +G   D  T N ++  
Sbjct: 423 CVTYNTLIGAYCKAG---------------KMGKAFRMMDEMTSKGLKIDTWTLNTILHC 467

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           + ++K  DEA  +     + G+     +Y +++  YF+    +    +WDEM  R   P 
Sbjct: 468 LCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPS 527

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +Y  +IGGL    +  +A   L EMLE G+      YN
Sbjct: 528 TITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYN 567



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 24/386 (6%)

Query: 188 IDELFSLDRNMEA--VLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNS 245
           IDE F +   ME   VL +    +++N ++D   ++R +            DK G   N+
Sbjct: 334 IDEAFRIRDEMEKMNVLPDV---VTYNTLIDGCSQWRDSSE--VYSLIEEMDKKGVKCNA 388

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
            TYN ++  + +        + L++M E GL     T+   + A+  A +  KA  + + 
Sbjct: 389 VTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDE 448

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M     K    T+N +L  L   K   EA  LL    K  +  +  +Y +L+ G+ + + 
Sbjct: 449 MTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEK 508

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
              A  +W+EM ++   P  + +N ++ GL +  K   AI     M   G  P+  +Y I
Sbjct: 509 GDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNI 568

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC +            GN  +    +    EM E    PD  T N L++ +  + M
Sbjct: 569 IIHGFCLE------------GNVEK---AFQFHNEMIENLFKPDVYTCNILLRGLCREGM 613

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            ++A++++  +V  G    + TYN I+ S  + G +E    +  EM  +   PD  +Y V
Sbjct: 614 LEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKV 673

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGM 569
           +I  L    R  EA ++  +M+E G+
Sbjct: 674 IIAALTDAGRIKEAEEFTLKMVESGI 699



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 21/266 (7%)

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-- 412
           +G + ++     A +++N+M    ++P+++  N ++  L++    S  +   +V+K    
Sbjct: 147 IGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIK 206

Query: 413 -GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G  PN  S+ I+I+ +C ++               ++    D + +M E GC PD ++Y
Sbjct: 207 LGVVPNTNSFNILIYGYCLES---------------KVKDALDWVNKMSEFGCVPDTVSY 251

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N ++  +  +++  EA  +  +M   G  P  HTYNM++  Y + G  +   KV + M R
Sbjct: 252 NTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTR 311

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR---AGR 588
               P   +Y +L+ G  +  +  EA++  +EM +  +   V+ YN      S+   +  
Sbjct: 312 NNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSE 371

Query: 589 SYVLDELAQKMRFSGKFEVSNVLARW 614
            Y L E   K          N++ +W
Sbjct: 372 VYSLIEEMDKKGVKCNAVTYNIILKW 397


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 24/346 (6%)

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQ 334
           L S+  F   ++A A  K+    +++ E M +      + T N L+    R S++     
Sbjct: 82  LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LL   +K  + P++ T + LL G+C  K + +A  + ++M++ G++PD +    ++ GL 
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
              K S+A+ L + M  +G  PN+ +Y +++   CK+                    N  
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVV 261

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           +Y+ +I      R  D   +L  EME +G  P+ +TY++LI  +   +   +A R+  +M
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +     P + T+N ++ ++ + G      K++DEMI+R   PD  +Y+ LI G    DR 
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            EA    E M+ K     V+ YN       +A R   +DE  +  R
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR---IDEGVELFR 424



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 182/386 (47%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  ++ T+ +++  L    +    V++++ M ++G   ++ T+ + +N      +   A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M   K +A V   + ++++L + +   +A  LF +++++   PN+ TY+ L+  
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C  +   +A R+ ++MI++   P+VV  N +++  +K GK  +A KL++ M  +   P+
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+                    +MI K C  N   Y  LI GF   +R+D   +L +
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TY  LI      +  D A  ++K+MV  G  P I TYN ++    + G
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    V++ + R    P   +Y ++I G+    +  + +     +  KG+K  V+ YN
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYN 544

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              +   R G     D L +KMR  G
Sbjct: 545 TMISGFCRKGLKEEADALFRKMREDG 570



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 174/397 (43%), Gaps = 25/397 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G +HN  TYN +++   R  Q    +++L +M + G   S+ T    +N +   K    A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           VA+ + M +  ++    T   L+  L       EA  L D++  R   PNL TY V++ G
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++  A  + N+M     + +VV ++ +++ L K     DA+ LF  M+ KG  PN
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y+ +I   C                      N   +  LI  F    ++     L  
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +R   PD  TY++LI    +    DEA  +++ M+     P + TYN ++  + +  
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             + G +++ EM +RG   +  +YT LI G         A    ++M+  G+   ++ YN
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474

Query: 578 KFAADLSRAG---RSYVLDELAQKMRFSGKFEVSNVL 611
                L + G   ++ V+ E  Q+ +        N++
Sbjct: 475 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 157/355 (44%), Gaps = 20/355 (5%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID  F+L   MEA   E  + + ++ V+D L ++RH    A   F    +K G   N  T
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVI-YSTVIDSLCKYRH-EDDALNLFTEMENK-GVRPNVIT 297

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y+S++S L    ++     +L +M E+ +  ++ TF   ++AF    +  +A  +++ M 
Sbjct: 298 YSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMI 357

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K      + T + L+          EA+ +F+ +  +   PN+ TY  L+ G+C+ K + 
Sbjct: 358 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRID 417

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   ++ EM  +G   + V +  ++ G  +     +A  +F+ M + G  PN+ +Y  ++
Sbjct: 418 EGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLL 477

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              CK        ++  +  R +M+               P   TYN +I+ M      +
Sbjct: 478 DGLCKNGKLEKAMVVFEYLQRSKME---------------PTIYTYNIMIEGMCKAGKVE 522

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           +   ++  +   G KP +  YN ++  + + G  E    ++ +M   G  PD  +
Sbjct: 523 DGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 170/383 (44%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++++L    Q    V ++E+M   G+ L    F   M+ F    +   A
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F+ M K    A   T   L+  L R+   KEA+ +  +++ +    +  TYTVL+ G
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+V  + EA  V N+M+ K   P+VV +  + +GL K G    A +L   M +KG   N
Sbjct: 435 YCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN 494

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I   CK                     +   YT +I      + +D  + LL+
Sbjct: 495 IFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQ 554

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM ++G  P  +TYN L+    +    +   R+ + M+     P   TYN +MK Y    
Sbjct: 555 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEK 614

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +++  M+ +   P++N+Y +LI G        EA  +  EM+EKG +     YN
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYN 674

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                L++  +      L +KMR
Sbjct: 675 ALIRLLNKKKKFTEARRLFEKMR 697



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 163/367 (44%), Gaps = 23/367 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   ++  + ++MS   R        +  +EM ++GL +   T+   +N    A E K+A
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             + + M          T   L++   +     EA L+ +K+ + R TPN+ TYT L  G
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++  A  + +EM  KG + ++  +N ++ GL K G    A++    M   G  P+
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT +I   C                    K     Y  L+ GF    R++    LL+
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M E+   P+  TYN+L+K   I+K       IYK M+     P  +TYN+++K + +  
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +       EMI +G     +SY  LI  L  + +  EA +  E+M ++ + A    YN
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYN 709

Query: 578 KFAADLS 584
            F  DLS
Sbjct: 710 -FYIDLS 715



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 159/378 (42%), Gaps = 34/378 (8%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           FC  GD            K G A +  TY ++++ L RA + +    +L+EM +KGL + 
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLF 337
             T+ + ++ +    +  +A  +   M + +    V T   L + L +   +    +LL 
Sbjct: 425 AVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLH 484

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           +        N+ TY  L+ G C+  NL +A R   +M + G KPDV  +  ++  L +  
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSK 544

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYT 437
           +   A  L + M  KG  P + +Y +++  FC                      N   Y 
Sbjct: 545 ELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYN 604

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+  +   + M    ++ K M  +   P+  TYN LIK     +   EA+  + EM+  
Sbjct: 605 SLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEK 664

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           GF+ T  +YN +++   +   +   R+++++M +     + + Y   I    ++D     
Sbjct: 665 GFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLEST 724

Query: 558 YKYLEEMLEKGMKAPVLD 575
               +E++E  +   + D
Sbjct: 725 LALCDELVEVTLVKSIAD 742



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 24/307 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N LL+ L  +   K+A  LFD++     P++ TY +++ G+C +  L  A ++ +EM  +
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G + + VA+  ++  L   G+ SDA+++ E M   G   +   +T ++  FC++      
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                         +   YT LI G      +     +L+EME++G   D +TY  LI  
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             K+ KM  EA  ++ +MV+    P + TY  +     + G+     ++  EM  +G   
Sbjct: 435 YCKVGKM-TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL 493

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +Y  LI GL       +A + + +M E G+K  V  Y      L ++        L 
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553

Query: 597 QKMRFSG 603
           Q+M   G
Sbjct: 554 QEMLDKG 560



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 26/256 (10%)

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A LL    ++  +P+  +   +L   CR+  L EA +++ E+ +K    +  ++NI+L+ 
Sbjct: 211 APLLLRLRQYGISPSPESCNAVL---CRLP-LDEAVQLFQELPEK----NTCSYNILLKA 262

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L   G+  DA +LF+ M +    P+V +Y IM+  +C  +                ++  
Sbjct: 263 LCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLS---------------ELETA 304

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             LL EM  RG   + + Y ++I L+  +    +AVR+ ++MV  G       +  +M  
Sbjct: 305 IKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG 364

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + + G+    R  +DEM +RG   D  +YT LI GL       EA + L+EM +KG+   
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424

Query: 573 VLDYNKFAADLSRAGR 588
            + Y        + G+
Sbjct: 425 AVTYTVLIDGYCKVGK 440



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 127/316 (40%), Gaps = 67/316 (21%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           + +Y      ++ N +L      +LP  EA  LF +L  +   N  +Y +LL   C    
Sbjct: 217 LRQYGISPSPESCNAVL-----CRLPLDEAVQLFQELPEK---NTCSYNILLKALCTAGR 268

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A ++++EM      PDVV + IM+ G   + +   AIKL   M A+G   N  +YT 
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I   C +                    +AAV+T +++GF  +  +    +   EM++RG
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              DG+T                                   Y  ++    + G  +   
Sbjct: 386 LAADGVT-----------------------------------YTALINGLCRAGELKEAE 410

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +V  EM  +G   D  +YTVLI G     +  EA+    +M++K +   V+ Y   +  L
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 584 SRAGRSYVLDELAQKM 599
            + G     +EL  +M
Sbjct: 471 CKQGDVCAANELLHEM 486


>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 186/395 (47%), Gaps = 25/395 (6%)

Query: 218 LERFRHARRPAFRFFCWAGDKP-GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           L R ++  + A + F      P  F +   +Y+ +++ LGR+R F  M  +L ++  +  
Sbjct: 15  LLRLQNGPKLALQLFQNPNPDPKPFRYTHLSYDLIITKLGRSRMFHEMEQILSQLRRETR 74

Query: 277 LSME--TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
            S +   F   ++ +  A+   +A+  FE + +++ +  V ++N LL  L   K  ++  
Sbjct: 75  FSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSLNSLLNALLNCKEFEKFD 134

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            +   +    TPN+ TY +L+   C    L +A  V++EM+ K   P+VV    ++ GL 
Sbjct: 135 GILSGIDKFATPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLC 194

Query: 395 KIGKRSDAIKLFEVM-KAKGPSPNVRSYTIMIWKFCKQN--------------------A 433
           +  +  +A +L E M K     PN   Y  ++   C+ N                    +
Sbjct: 195 RDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDS 254

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
            +Y+ LI       R D V+ +L+EM E GC PD +TYNA+I     +K  + A  + +E
Sbjct: 255 GIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEE 314

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV  G KP + +YN+I+    + G +     ++++M RRGC PD  SY +L  GL    +
Sbjct: 315 MVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQ 374

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             EA   L+EM+ KG         KF   L  +GR
Sbjct: 375 FNEAAFILDEMVFKGYAPKSASXTKFVEALC-SGR 408



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 136/307 (44%), Gaps = 17/307 (5%)

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            ++FE    +L  + +    ++ T+ I +NA   +     A  +F+ M +      V T 
Sbjct: 127 CKEFEKFDGILSGIDKFATPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTF 186

Query: 318 NCLLENLGR-SKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
             L+  L R S+L + ++L  D +K     PN   Y  L+ G CRV  L  A  +  EM+
Sbjct: 187 GTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMV 246

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
               + D   ++ ++  L K+G++ +   + E M+  G               CK +   
Sbjct: 247 ANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENG---------------CKPDTVT 291

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  +I+GF N +  +  Y +L+EM  +GC PD ++YN +I  +  +    EA  ++++M 
Sbjct: 292 YNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMP 351

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           R G  P + +Y ++     +   +     + DEM+ +G  P   S T  +  L S    G
Sbjct: 352 RRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASXTKFVEALCSGRELG 411

Query: 556 EAYKYLE 562
              +  E
Sbjct: 412 VVVQSFE 418


>gi|449436631|ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
          Length = 1559

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 176/372 (47%), Gaps = 29/372 (7%)

Query: 223 HARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME- 280
           H R P ++ FF W   +  F H + TYN M+ ILG+  +F+    ++  M +    S + 
Sbjct: 609 HRRLPRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDH 668

Query: 281 -TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            TF+I    +A A    +A+A +E + ++K +      N L++ L  S+   EAQ L   
Sbjct: 669 ATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCN-LIDALCESRHVDEAQELCFG 727

Query: 340 LKHRFTPNLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
              +   + +T  + ++L GW ++    +    W EM  KG + D+ +++I ++   K G
Sbjct: 728 KNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSG 787

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYT 437
           K   A+KL++ MK KG   +V +Y  +I                       CK N     
Sbjct: 788 KPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCN 847

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            +I  F    R    + +L +M +R C P+ +TY+   + ++    P E + ++  M++ 
Sbjct: 848 TVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLE---KPKEILVLFDRMIKY 904

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P + TY M+++ + + G       VW++M   GC P++ +Y  LI  L+ +     A
Sbjct: 905 GVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMA 964

Query: 558 YKYLEEMLEKGM 569
            KY EEM+ KG+
Sbjct: 965 RKYDEEMVAKGL 976



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +   YN+++  +G +   +    +  EM E G   ++ T    +  F      K
Sbjct: 801 KKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFK 860

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
            A  + + M K   +  V T +C   +L +   PKE  +LFD++ K+   P + TY +LL
Sbjct: 861 DAHMMLDQMLKRDCQPNVITYHCFFRSLEK---PKEILVLFDRMIKYGVHPKMDTYVMLL 917

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + R   L     VWN+M + G  P+  A+N +++ L++ G    A K  E M AKG S
Sbjct: 918 RKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLS 977

Query: 416 PNVR 419
           P +R
Sbjct: 978 PKLR 981


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 194/465 (41%), Gaps = 60/465 (12%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
           I+ VC+++ E      ++E  L E  +N +  LV+ VL R +     A  +F WA     
Sbjct: 68  IDSVCQIL-ETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNN-AVNYFRWAERLTD 125

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            AH    YNS++ ++ R R+F  +  +LEEM   G   S  T    + +F  +++ ++A 
Sbjct: 126 RAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAF 185

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
              + M K KF+        L+  L  S+       LF +++   +  N+  +T L+  +
Sbjct: 186 TFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVF 245

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            R   +  A  + +EM     +PDVV +N+ ++   K GK   A K F  MKA G   + 
Sbjct: 246 AREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDD 305

Query: 419 RSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT MI   CK +                    A  Y  +I G+G   + +  Y LL+ 
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
              +GC P  ++YN ++  +  +   DEA++ ++EM +    P + TYN+++    + G 
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGK 424

Query: 519 YEMGRKVWDEMIRRG-----------------------------------CCPDDNSYTV 543
            E    V D M   G                                   C PD  +Y  
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCS 484

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           LI GL    R  EAYK  E+ML+       + Y     +  + GR
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 188/448 (41%), Gaps = 91/448 (20%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +YN ++S LGR  Q +  +   EEM +  + ++ T+ I ++    A + + A+ + + M 
Sbjct: 377 SYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK 436

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR----- 360
                  V T+N +++ L +++   +A  +F+ L H+   P+  TY  L+ G  R     
Sbjct: 437 DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVD 496

Query: 361 ------------------------VKNLMEAGR------VWNEMIDKGFKPDVVAHNIML 390
                                   ++N  + GR      ++NEM+  G  PD++  N  +
Sbjct: 497 EAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYM 556

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA---------------- 434
           + + K G+      LF+ +K  G  P+ RSYTI+I    K   A                
Sbjct: 557 DCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCV 616

Query: 435 ----VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMP----- 484
                Y  +I GF    +++  Y LL+EM+ +G  P  +TY ++I  L KI ++      
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676

Query: 485 -----------------------------DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
                                        DEA  I +E+++ G  P ++T+N ++ +  +
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
                     +  M    C P+  +Y++LI GL    +  +A+ + +EM ++G K  V  
Sbjct: 737 AEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFT 796

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           Y    + L++AG     D L +K +  G
Sbjct: 797 YTTMISGLAKAGNIVEADTLFEKFKEKG 824



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 210/503 (41%), Gaps = 99/503 (19%)

Query: 198 MEAVLDE---CGINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMM 252
           +E +L+E    G   S+N  ++++  F  +R  R AF F      K  F      Y +++
Sbjct: 149 LEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFI-QTMRKLKFRPAFSAYTNLI 207

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
             L  +R  + M+++ ++M E G  +++  F   +  FA       A+++ + M     +
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEA--- 367
             V   N  ++  G++     A   F ++K +    +  TYT ++G  C+   L EA   
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 368 ------------GRVWNEMI--------------------DKGFKPDVVAHNIMLEGLLK 395
                          +N MI                     KG  P VV++N +L  L +
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGR 387

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------QNAAVYTCLIT 441
            G+  +A+K FE MK K   PN+ +Y IMI   CK              ++A ++  +IT
Sbjct: 388 KGQVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVIT 446

Query: 442 ------GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                      +R+D    + + ++ + C PD +TY +LI+ +      DEA ++Y++M+
Sbjct: 447 VNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML 506

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC--------------------- 534
            +   P    Y  +++++F+ G  E G K+++EM+R GC                     
Sbjct: 507 DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566

Query: 535 --------------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
                          PD  SYT+LI GL+    + EAY+    M E+G       YN   
Sbjct: 567 KGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVI 626

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               ++G+     +L ++M+  G
Sbjct: 627 DGFCKSGKVNKAYQLLEEMKTKG 649



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 23/365 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKG----LLSMETFKIAMNAFAAAKERKKAV 299
           N+  Y S++    +  + E    +  EM   G    LL + T+   M+    A E +K  
Sbjct: 513 NAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTY---MDCVFKAGEIEKGR 569

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+F+ +    F     +   L+  L ++    EA  LF  +K +    +   Y  ++ G+
Sbjct: 570 ALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGF 629

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + +A ++  EM  KG +P VV +  +++GL KI +  +A  LFE  K+KG   NV
Sbjct: 630 CKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNV 689

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                           +Y+ LI GFG   R+D  Y +++E+ ++G  P+  T+N L+  +
Sbjct: 690 ---------------VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 734

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +   EA+  ++ M      P   TY++++    +   +      W EM ++G  P+ 
Sbjct: 735 VKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNV 794

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT +I GL       EA    E+  EKG  A    YN     LS A R+     L ++
Sbjct: 795 FTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854

Query: 599 MRFSG 603
            R  G
Sbjct: 855 ARLKG 859



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 17/220 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY S++  L +  + +    + EE   KG+ L++  +   ++ F       +A  I E +
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      V T NCLL+ L +++   EA + F  +K  + TPN  TY++L+ G C+++  
Sbjct: 716 MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKF 775

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A   W EM  +GFKP+V  +  M+ GL K G   +A  LFE  K KG   +       
Sbjct: 776 NKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD------- 828

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                   +A+Y  +I G  N  R    Y L +E   +GC
Sbjct: 829 --------SAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 108/214 (50%), Gaps = 7/214 (3%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+  F  A  K G   N   Y+S++   G+  + +    ++EE+ +KGL  ++ T+   +
Sbjct: 673 AYMLFEEAKSK-GIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL 731

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFT 345
           +A   A+E  +A+  F+ M   K      T + L+  L + +   +A + + ++ K  F 
Sbjct: 732 DALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFK 791

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ TYT ++ G  +  N++EA  ++ +  +KG   D   +N ++EGL    + SDA +L
Sbjct: 792 PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRL 851

Query: 406 FEVMKAKGPSPNVRSYTIMIWKF----CKQNAAV 435
           FE  + KG S   ++  +++       C + AA+
Sbjct: 852 FEEARLKGCSIYTKTCVVLLDSLHKAECIEQAAI 885


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 180/403 (44%), Gaps = 22/403 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+  Y S++++L    Q    + +LE+M   G+ L    F   ++ F +  +   A
Sbjct: 317 GLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAA 376

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M K    A   T   L+  L R+   KEA  +  ++  +    ++ TYTVL+ G
Sbjct: 377 RRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDG 436

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  N++EA RV NEM+ +   P+VV +  + +GL K G    A +L   M  KG   N
Sbjct: 437 YCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELN 496

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I   CK                     +   YT LI         D  +++L+
Sbjct: 497 VYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQ 556

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM ++G  P   TYN L+    +    +   ++ + M+    +P + TYN +MK Y    
Sbjct: 557 EMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDK 616

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +++  M  +   P++N+Y +LI G        EA  + +EM+EKG++     Y+
Sbjct: 617 NMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYS 676

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKN 620
                L++  +         KMR  G     +V + + + + N
Sbjct: 677 ALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFN 719



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 173/376 (46%), Gaps = 30/376 (7%)

Query: 210 SHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           SHN+++  L    R + A        C   D+     +  TY +M+       + E  V 
Sbjct: 257 SHNILLKALLSAGRLKDA--------CQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVK 308

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L+EM  KGL S  T   ++ A    K +   A+ + E M  +           ++    
Sbjct: 309 LLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFC 368

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                  A+ LF++++ R    +  T+T L+ G CR   L EA RV  EM+DKG   DVV
Sbjct: 369 SKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVV 428

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            + ++++G  K G   +A ++   M  +  +PNV +YT +    CKQ            G
Sbjct: 429 TYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQ------------G 476

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           + R  +   +LL EM  +G   +  TYN+LI  L K   + ++A+RI  EM  +G +  +
Sbjct: 477 DVRAAN---ELLHEMCNKGLELNVYTYNSLINGLCKFGNL-EQAMRIMTEMEAAGHRTDV 532

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           +TY  ++ +  ++G ++    +  EM+ +G  P   +Y VL+ G     R     K LE 
Sbjct: 533 YTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEW 592

Query: 564 MLEKGMKAPVLDYNKF 579
           MLEK ++  V+ YN  
Sbjct: 593 MLEKNVRPNVVTYNSL 608



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 150/323 (46%), Gaps = 29/323 (8%)

Query: 287 NAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT 345
           NA  +     +A+A+F EL +K      V + N LL+ L  +   K+A   FD++     
Sbjct: 232 NAVLSRLPLDEAIALFRELPDK-----NVCSHNILLKALLSAGRLKDACQHFDEMSS--P 284

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ TY  ++ G+C    L  A ++ +EM  KG + +   +  ++  L   G+ SDA+++
Sbjct: 285 PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRV 344

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            E M   G                  +A V+T +I+GF ++  +     L +EM++RG  
Sbjct: 345 LEDMTMHG---------------VALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLA 389

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D +T+ ALI  +       EA R+ +EMV  G    + TY +++  Y + GN     +V
Sbjct: 390 ADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRV 449

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            +EM+ R   P+  +YT L  GL  Q     A + L EM  KG++  V  YN     L +
Sbjct: 450 HNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCK 509

Query: 586 AGRSYVLDELAQKMRFSGKFEVS 608
            G       L Q MR   + E +
Sbjct: 510 FG------NLEQAMRIMTEMEAA 526



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 69/368 (18%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           FC  GD            K G A +  T+ ++++ L RA + +    +L+EM +KGL + 
Sbjct: 367 FCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVD 426

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLF 337
           + T+ + ++ +       +A  +   M   +    V T   L + L +    + A +LL 
Sbjct: 427 VVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLH 486

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW-------------------------- 371
           +        N+ TY  L+ G C+  NL +A R+                           
Sbjct: 487 EMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSG 546

Query: 372 ---------NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
                     EM+DKG KP +  +N+++ G    G+     KL E M  K   PNV +Y 
Sbjct: 547 EFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYN 606

Query: 423 IMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            ++ ++C                      N   Y  LI G    R M       +EM E+
Sbjct: 607 SLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEK 666

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G      +Y+ALI+L+  +K   EA   + +M   G       Y+  M   F   N E  
Sbjct: 667 GLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLEST 726

Query: 523 RKVWDEMI 530
             + DE++
Sbjct: 727 ITLCDELV 734


>gi|224088126|ref|XP_002308333.1| predicted protein [Populus trichocarpa]
 gi|222854309|gb|EEE91856.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 199/434 (45%), Gaps = 19/434 (4%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  LD+ G  L   +V  VL+R       A+RFF W   K GF H ++TYN+M+   G
Sbjct: 156 SMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAG 215

Query: 257 RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
            AR+F  +  +LEEM +      ++T+ I +  +  AK   KA+ + E M K   +  V+
Sbjct: 216 EAREFSVVDVLLEEMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVE 275

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
                L +L  +   + A  ++ ++  R   PNL+ Y +LL    +  ++     V ++M
Sbjct: 276 VYEVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDM 335

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           I     P+   H  +L+     G+  +A++L   +K K                 + +  
Sbjct: 336 IRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKE---------------IQLDYE 380

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           V   L+ G     R+    +++ E+ +R    DG  Y  +I     +    +A+ +++ M
Sbjct: 381 VSETLVKGLSRANRIADALEIV-EIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSM 439

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G  PT  TY  +M+  F++  Y+   +++DEM+ RG   D  +   ++ G + QD  
Sbjct: 440 KEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHI 499

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
            EA++  E M +KG+K     Y+ F  +L +  R+  + ++  KM+ S  F + + +  W
Sbjct: 500 SEAWEVFETMEDKGIKPTWKSYSIFIKELCKVLRTDEIIKVLGKMQASKMF-ICDEIFEW 558

Query: 615 AETTKNRVYRKDRI 628
             +   R    D I
Sbjct: 559 VISCMERKGEMDNI 572



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 115/503 (22%), Positives = 208/503 (41%), Gaps = 81/503 (16%)

Query: 149  DDNQDSDGECDGNNSESEITSVSYKSTA------DPREIERVCKVIDELFSLDRNMEAVL 202
            D +++ +   D N +ES    V + S        D ++++ V +++  L       +A L
Sbjct: 595  DLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQDA-L 653

Query: 203  DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
            ++C I  +  LV + L         A  FF W G + GF   + TYN  M + GR + F+
Sbjct: 654  EKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDFK 713

Query: 263  TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
             M S+  EM  +G L                                     DT   ++ 
Sbjct: 714  HMRSLFYEMRRRGFL----------------------------------IPPDTWAIMIM 739

Query: 323  NLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC--RVKNLMEAGRVWNEMIDKGF 379
              GR+ L + A  +F ++K     PN +TY  L+   C  + + + EA +++ EMI  G 
Sbjct: 740  QYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIRAGH 799

Query: 380  KPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKGPSPNVRSYTIMIWKFCKQ------- 431
             PD       L  L ++GK  +A K  + + KA    P   SY++ I   C+        
Sbjct: 800  VPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPA--SYSLYIRALCRAGMLEEAL 857

Query: 432  -------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                         +   +  L+ G   + R++     +  M++ G  P    Y +LI   
Sbjct: 858  SLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHF 917

Query: 479  KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +K+  +A+ I++ M + G +PTI TY+ +++ Y  T N      V+  +  +G  PD 
Sbjct: 918  FREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDF 977

Query: 539  NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
             +Y++ +  L    +S EA + L +M++ G+    +++      L+R G+  +   + QK
Sbjct: 978  KTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVFFGLNREGKQSLAQTVLQK 1037

Query: 599  MRFSGKFEVSNVLARWAETTKNR 621
                          +WA T+K +
Sbjct: 1038 --------------KWALTSKRK 1046


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 178/388 (45%), Gaps = 26/388 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           NS T++ +++ L +    +  V +  +M   G    +  +   ++    +   +++  + 
Sbjct: 323 NSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLL 382

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRV 361
           + M +   +    T NC+   L R      A  L  K++ H   P +   T L+   C+ 
Sbjct: 383 QEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKH 442

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
              +EA +   +M ++GF+PD+VA++  L+GL+KI +   A+KLF+ + A+G  P+V +Y
Sbjct: 443 GKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAY 502

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
            I+I   CK                +R+    +LL EMEE+G  P  +TYN LI  +   
Sbjct: 503 NILIKGLCKT---------------QRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKT 547

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              +EA+     M+    +P + TY+ ++      G  +    +W+EM R+GC P   +Y
Sbjct: 548 DHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAY 607

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY----NKFAADLSRAGRSYVLDELAQ 597
              I GL +  R  EA  YL EM E+ MK     Y    N F  D ++     +L E+  
Sbjct: 608 MAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVD 667

Query: 598 KMRFS-----GKFEVSNVLARWAETTKN 620
           K +F          V N + +++E  + 
Sbjct: 668 KGKFPDLHDKNHISVRNAILKFSEDART 695



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 156/367 (42%), Gaps = 34/367 (9%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288
           FR     G KP        YN+++  L  + + +    +L+EM E G+   E      N 
Sbjct: 347 FRDMARIGCKPDLL----LYNNLIDGLCTSNRLQESCGLLQEMEESGI---EPTSFTNNC 399

Query: 289 -FAAAKERKKAVAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEA-QLLFDKLKHR 343
            F     R        L+ K +    V  I     L++ L +     EA + L D  +  
Sbjct: 400 IFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEG 459

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           F P++  Y+  L G  +++ + +A +++ ++  +G+ PDV+A+NI+++GL K  + ++A 
Sbjct: 460 FQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQ 519

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
            L   M+ KG  P+  +Y  +I   CK                     N   Y+ LI G 
Sbjct: 520 NLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGL 579

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
            N  R D    L  EM  +GC P  + Y A I  +     P+EA+   +EM     KP  
Sbjct: 580 CNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDT 639

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD--DNSYTVLIGGLISQDRSGEAYKYL 561
           + Y  ++ ++    N  +  ++  EM+ +G  PD  D ++  +   ++           +
Sbjct: 640 YVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHDKNHISVRNAILKFSEDARTSSSI 699

Query: 562 EEMLEKG 568
           + +L KG
Sbjct: 700 KNLLAKG 706



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 178/470 (37%), Gaps = 117/470 (24%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  +  T   ++ +     +F+  + +  E+ ++G +    F I + AF+   +  KA 
Sbjct: 96  GWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDKAC 155

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
            + E M +   +    T   L+    +     +A  LFDK+K   FTP+++ Y V++GG 
Sbjct: 156 ELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGL 215

Query: 359 CRVKNLMEAGRVWNEMIDKGFK--PDV--------------------------------- 383
           C  K++ +A  +++EM  KGFK  PDV                                 
Sbjct: 216 CVNKDVKKALCLYSEM--KGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKAST 273

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVM-----------------KAKGPSPNVRSYTIMIW 426
           + +N +L  L+  G    A  L + +                 KA  P PN  +++I+I 
Sbjct: 274 LLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVP-PNSTTFSIVIN 332

Query: 427 KF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
                                 CK +  +Y  LI G     R+     LL+EMEE G  P
Sbjct: 333 GLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEP 392

Query: 467 DGLTYNA----------------LIKLMKIQ-KMP------------------DEAVRIY 491
              T N                 L+K M+I   +P                   EA +  
Sbjct: 393 TSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFL 452

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M   GF+P I  Y+  +    +    +   K++ ++  +G CPD  +Y +LI GL   
Sbjct: 453 VDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKT 512

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
            R  EA   L EM EKG+    + YN     L +       D L + M F
Sbjct: 513 QRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKT------DHLEEAMLF 556



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 152/405 (37%), Gaps = 68/405 (16%)

Query: 251 MMSILGRARQFETMVSM-LEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           M SIL RARQ   + ++ ++ +  + L+S       +     A    +A  +F+ + K  
Sbjct: 1   MASILSRARQKAPLRALSMDVVNSRCLMSPGALGFLIRCLGNAGLVVEANLLFDQVQKMG 60

Query: 310 FKAGVD-TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEA 367
                  +  CLLE L +S      ++   ++  H +  +  T T +L  +C +    +A
Sbjct: 61  LCVPNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKA 120

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
             V+NE+ D+G+  + V  +I++    K GK   A +L E M+ K    NVR        
Sbjct: 121 LDVFNEIHDRGWVDEYV-FSILVLAFSKWGKVDKACELIETMEEK----NVR-------- 167

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               N   +  LI GF    R+D    L  +M++ G  PD   Y+ +I  + + K   +A
Sbjct: 168 ---LNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKA 224

Query: 488 VRIYKEMVRSGFKPTIHT---------------------------------YNMIMKSYF 514
           + +Y EM     +P +                                   YN ++ S  
Sbjct: 225 LCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLV 284

Query: 515 QTGNYEMGRKVWDEMIRRGCC----------------PDDNSYTVLIGGLISQDRSGEAY 558
             G+      +   +    C                 P+  +++++I GLI       A 
Sbjct: 285 DNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAV 344

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               +M   G K  +L YN     L  + R      L Q+M  SG
Sbjct: 345 GLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESG 389


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 176/384 (45%), Gaps = 28/384 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMN 287
           F+     G  P F     TY+S++  L +AR  +   + L +M  KG+L    T+   + 
Sbjct: 242 FKEMVQRGIPPDFV----TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIY 297

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TP 346
            +++  + K+AV +F+ M +      V T N L+ +L +    KEA+ +FD +  +   P
Sbjct: 298 GYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNP 357

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ +Y ++L G+     L++   +++ M+  G  P +   N++++     G    A+ +F
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 417

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK----------------QNAA----VYTCLITGFGNR 446
             M+  G  PNV +YT +I   C+                Q  A     Y CLI GF   
Sbjct: 418 NEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTH 477

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             +    +L+ E+   G   D + ++++I  L K+ ++ D A  I+   V  G  PT   
Sbjct: 478 GSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMD-AQNIFDLTVNVGLHPTAVV 536

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y+M+M  Y   G  E   +V+D M+  G  P+D  Y  L+ G     R  E      EML
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 566 EKGMKAPVLDYNKFAADLSRAGRS 589
           +KG+K   + YN     L  AGR+
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRT 620



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 16/334 (4%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G++ Q + ++ M+ E G      +  +   ++ F    +  KA  +F+ M +        
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + ++  L +++   +A+    ++ ++   PN  TY  L+ G+       EA RV+ EM
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
             +   PDVV  N+++  L K GK  +A  +F+ M  KG +P+V SY IM+  +     A
Sbjct: 316 RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY-----A 370

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              CL+           + DL   M   G  P   T+N LIK      M D+A+ I+ EM
Sbjct: 371 TKGCLVD----------MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G KP + TY  ++ +  + G  +   + +++MI +G  PD  +Y  LI G  +    
Sbjct: 421 RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A + + E++  GM   ++ ++    +L + GR
Sbjct: 481 LKAKELISEIMNNGMHLDIVLFSSIINNLCKLGR 514



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N +M  L +  + +    + + M  KG    + ++ I +N +A          +F+LM
Sbjct: 326 TFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 385

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N L++      +  +A ++F++++ H   PN+ TYT ++   CR+  +
Sbjct: 386 LGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKM 445

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A   +N+MID+G  PD  A++ +++G    G    A +L   +   G   ++  ++ +
Sbjct: 446 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSI 505

Query: 425 IWKFCK-------QN-------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK       QN             A VY+ L+ G+    +M+    +   M   G 
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 465 PPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            P+ + Y  L+    KI ++ DE + +++EM++ G KP+   YN+I+   F+ G     +
Sbjct: 566 EPNDVVYGTLVNGYCKIGRI-DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 624

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
             + EM   G   +  +Y++++ GL       EA    +E+    +K  ++  N   A +
Sbjct: 625 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 684

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            +  R     +L   +  SG
Sbjct: 685 FQTRRVEEAKDLFASISRSG 704



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 29/277 (10%)

Query: 330 PKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           P  A  LF++   R       +P   TY +L+    R      A   + +++  G + D+
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDI 146

Query: 384 VAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           +  N +L+G  +  +  +A+  L       G  P+V SY+I++   C Q           
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 206

Query: 432 -----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      +   Y  +I GF     ++   DL KEM +RG PPD +TY++++  +  
Sbjct: 207 MMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCK 266

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +  D+A    ++MV  G  P   TYN ++  Y  TG ++   +V+ EM R+   PD  +
Sbjct: 267 ARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVT 326

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           + +L+G L    +  EA    + M  KG    V  YN
Sbjct: 327 FNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN   Y  L+ G+C++  + E   ++ EM+ KG KP  + +NI+++GL + G+   A   
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 626

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G + N  +Y+I               ++ G    R  D    L KE+      
Sbjct: 627 FHEMTESGIAMNKCTYSI---------------VLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D +T N +I  M   +  +EA  ++  + RSG  P + TY++++ +  + G  E    +
Sbjct: 672 IDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDM 731

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +  M   GC PD      ++  L+ ++    A  YL ++ E+
Sbjct: 732 FSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDER 773


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 202/447 (45%), Gaps = 41/447 (9%)

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
           D   S    + A LD  GI     L++ V +RF  + +     F WA  +P F    + +
Sbjct: 102 DPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLF 161

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKG---------LLSMETFKIAMNAFAAAKERKKAV 299
           +++++ L +AR+F+    ++    EK          L+S+ TF I +  +A A   K A+
Sbjct: 162 DAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAI 221

Query: 300 AIFELM--NKYKFKAG--VDTINCLLENLGRSKLPKEAQLLF---DKLKHRFTPNLTTYT 352
             +E    NK    +G  +  +  L+++L +    +EA   F    +L   + P++  Y 
Sbjct: 222 RTYEFATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYN 281

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           ++L GW R++ L +  R+W EM  +  +P VV +  ++EG  ++ +   A+++   M  +
Sbjct: 282 IMLNGWFRLRKLKQGERLWAEM-KENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKE 340

Query: 413 GPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIV 452
           G +PN   Y  +I    +                       + Y  L+ GF     +   
Sbjct: 341 GIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGA 400

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             +LK M  RG  P   TYN   +     +  +E + +Y ++++SG+ P   TY++++K 
Sbjct: 401 SKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKM 460

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             +    ++  +V  EM   G   D  + T+L+  L    R  EA+   E+M+ +G+   
Sbjct: 461 LCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQ 520

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKM 599
            L + +  ADL + G    + E+AQK+
Sbjct: 521 YLTFQRMKADLKKQG----MTEMAQKL 543



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 128/307 (41%), Gaps = 23/307 (7%)

Query: 226 RPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI 284
           R A  +F W  +    +  + R YN M++   R R+ +    +  EM E    ++ T+  
Sbjct: 257 REASEYFLWKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMKENMRPTVVTYGT 316

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HR 343
            +  +   +  +KA+ +   M K          N +++ L  +   KEA  + ++     
Sbjct: 317 LVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLE 376

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P  +TY  L+ G+C+  +L+ A ++   MI +GF P    +N       +  K  + +
Sbjct: 377 IGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGM 436

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
            L+  +   G +P+  +Y +++   C++                    + A  T L+   
Sbjct: 437 NLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLL 496

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
              RR++  +   ++M  RG  P  LT+  +   +K Q M + A ++ K M    + P +
Sbjct: 497 CKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLCKLMSSVPYSPNL 556

Query: 504 -HTYNMI 509
            +TY  +
Sbjct: 557 PNTYGEV 563


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 173/371 (46%), Gaps = 25/371 (6%)

Query: 221 FRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM 279
           F H  + AF F       K G+  N+ T+ ++M  L    + + ++   +++  +   + 
Sbjct: 55  FCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTN 114

Query: 280 E-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           + ++   +N      E + A+ +  ++     +  V   + +++ L + KL  EA  L+ 
Sbjct: 115 QVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYS 174

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           ++  R   PN+ TY  L+  +C    LM A  + +EMI K   PDV   +I+++ L K G
Sbjct: 175 EMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG 234

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYT 437
           K  +A ++F  M   G +PNV SY IMI   CK                     +   Y 
Sbjct: 235 K--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYN 292

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI G     R+    +L+ EM  RG P D +TY +L+  +   +  D+A  ++ +M   
Sbjct: 293 SLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 352

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G +PT++TY  ++    + G  +  ++++  ++ +GCC D  +YTV+I GL  +    EA
Sbjct: 353 GIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEA 412

Query: 558 YKYLEEMLEKG 568
                +M + G
Sbjct: 413 LAIKSKMEDNG 423



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 20/288 (6%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           INC   +LG+  +     LL   LK  + PN  T+T L+ G C    + +     ++++ 
Sbjct: 52  INCFC-HLGQ--MAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVA 108

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           + F+ + V++  +L GL K G+   AIKL  +++ +   PNV  Y+ +I   CK      
Sbjct: 109 QAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKD----- 163

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                     + ++  YDL  EM+ R   P+ +TYN LI    +      A  +  EM+ 
Sbjct: 164 ----------KLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL 213

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
               P ++T+++++ +  + G  +  ++++  M++ G  P+  SY ++I GL    R  E
Sbjct: 214 KNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE 271

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
           A   L EML K M    + YN     L ++GR      L  +M   G+
Sbjct: 272 AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ 319



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 20/376 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++  L + + + T++S+ ++M  KG+  ++ T  I +N F    +   + ++   + 
Sbjct: 13  FNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKIL 72

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  +     T   L++ L      K+     DK+    F  N  +Y  LL G C+     
Sbjct: 73  KLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETR 132

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A ++   + D+  +P+VV ++ +++GL K    ++A  L+  M A+   PNV +Y  +I
Sbjct: 133 CAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLI 192

Query: 426 WKFC------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
             FC                    N  VYT  I      +       +   M + G  P+
Sbjct: 193 CAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPN 252

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
             +YN +I  +   K  DEA+ + +EM+     P   TYN ++    ++G       + +
Sbjct: 253 VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMN 312

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           EM  RG   D  +YT L+  L       +A     +M E+G++  +  Y      L + G
Sbjct: 313 EMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGG 372

Query: 588 RSYVLDELAQKMRFSG 603
           R     EL Q +   G
Sbjct: 373 RLKNAQELFQHLLVKG 388


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 177/392 (45%), Gaps = 32/392 (8%)

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           HN  V +  R    R P           P F      +N+++S L + ++F T +S+ + 
Sbjct: 50  HNDAVALFNRMLLMRPPP----------PTFQ-----FNNILSSLVKMQRFPTAISLSKH 94

Query: 271 MGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-RSK 328
           +  KG+ S + T  I +N F    +   + ++   + K  +   V T+  L++ L  R +
Sbjct: 95  LDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGE 154

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           + K  +   D +   F  +  +Y  L+ G C++     A ++   + ++  KPDVV +NI
Sbjct: 155 VKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNI 214

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           +++ L K     +A  L+  M AK   PNV +YT +I+ FC     +  CLI        
Sbjct: 215 IIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFC-----IMGCLIEAVA---- 265

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
                 LL EM+ +   PD  T++ LI  +  +     A  +   M+++  KP + TYN 
Sbjct: 266 ------LLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNS 319

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++  YF     +  + V++ M + G  P   SYT++I GL       EA    EEM  K 
Sbjct: 320 LVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKN 379

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           +    + +N     L ++GR   + +L  KMR
Sbjct: 380 VIPNTITFNSLIDGLCKSGRIAYVWDLVDKMR 411



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 56/339 (16%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           +N      E K A+ +   + +   K  V   N ++++L ++KL  EA  L+ ++  +  
Sbjct: 181 INGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQI 240

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF------------------------- 379
            PN+ TYT L+ G+C +  L+EA  + NEM  K                           
Sbjct: 241 YPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKI 300

Query: 380 ----------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
                     KPDVV +N +++G   + +   A  +F  M   G +P V+SYTIMI   C
Sbjct: 301 VLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLC 360

Query: 430 KQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           K                     N   +  LI G     R+  V+DL+ +M +R    D +
Sbjct: 361 KTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVI 420

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TY++LI  +      D+A+ ++K+M+    +P ++TY +++    + G  ++ ++V+  +
Sbjct: 421 TYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHL 480

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           + +G   D  +YTV+I G        EA   L +M + G
Sbjct: 481 LIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNG 519



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 16/225 (7%)

Query: 209 LSHNLVVD---VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           +++N +VD   ++   +HA+   F     +G  PG     ++Y  M+  L + +  +  +
Sbjct: 315 VTYNSLVDGYFLVNEVKHAKY-VFNSMAQSGVTPGV----QSYTIMIDGLCKTKMVDEAI 369

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA-IFELMNKYKFK---AGVDTINCLL 321
           S+ EEM  K ++      I  N+      +   +A +++L++K + +   A V T + L+
Sbjct: 370 SLFEEMKHKNVIPNT---ITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLI 426

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           + L ++    +A  LF K +     P++ TYT+L+ G C+   L  A  V+  ++ KG+ 
Sbjct: 427 DALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYH 486

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            D+  + +M+ G  K G   +A+ L   M+  G  PN  ++ I+I
Sbjct: 487 LDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIII 531


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 182/388 (46%), Gaps = 23/388 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  +  +++ M   G+   + T+   +++       ++A  +FE 
Sbjct: 257 TYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEE 316

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S+ P+EA  +  +++   F P++ TY  L+  + R   
Sbjct: 317 MKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGL 376

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  + ++M+ KG KPDV  +  +L G  K GK   A+K+FE M+  G  PN+     
Sbjct: 377 LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI----- 431

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                C  NA     LI   GNR     +  + +E++   C PD +T+N L+ +     M
Sbjct: 432 -----CTFNA-----LIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGM 481

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   ++KEM R+GF P   T+N ++ +Y + G ++    ++  M+  G  PD ++Y  
Sbjct: 482 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNA 541

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K L EM +   K   L Y       +       +  LA+++ +SG
Sbjct: 542 VLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEI-YSG 600

Query: 604 KFEVSNVLARWAETTKNRVYRKDRIETD 631
             E   VL +    T   VY K  + T+
Sbjct: 601 IIEPQAVLLK----TLVLVYSKSDLLTE 624



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 168/399 (42%), Gaps = 57/399 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GFA +  TYNS++S   R    +  + +  +M +KG+   + T+   ++ F    +   A
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYA 415

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + +FE M     +  + T N L++  G      E   +F+++K     P++ T+  LL  
Sbjct: 416 MKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAV 475

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +     E   V+ EM   GF P+    N ++    + G    A+ ++  M   G +P+
Sbjct: 476 FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPD 535

Query: 418 VRSYTIMI--------WKF------------CKQNAAVYTCLITGFGNRRRMD------- 450
           + +Y  ++        W+             CK N   Y  L+  + N + ++       
Sbjct: 536 LSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAE 595

Query: 451 ------------------IVY---DLLKEME-------ERGCPPDGLTYNALIKLMKIQK 482
                             +VY   DLL E E       E+G  PD  T NA++ +   ++
Sbjct: 596 EIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRR 655

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M  +   I   +  SGF P++ TYN +M  Y +T ++E    +  E+I +G  PD  S+ 
Sbjct: 656 MVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFN 715

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            +I       R  EA +   EM + G+   V+ YN F A
Sbjct: 716 TVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIA 754



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 25/305 (8%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           KGL+  +  ++A+  F   + R+   +I          + V  I  +L   GR+     A
Sbjct: 155 KGLVFYKKNELALCVFYFVRNREDFASILS-------NSVVAVIISVLGKEGRASFA--A 205

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            LL D        ++  YT L+  +       EA  V+ ++ ++G +P ++ +N++L   
Sbjct: 206 SLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY 265

Query: 394 LKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
            K+G     I  L + MK+ G +P++ +Y  +I   C++  ++Y             +  
Sbjct: 266 GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISS-CRR-GSLY-------------EEA 310

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            ++ +EM+  G  PD +TYNAL+ +    + P EA+ + KEM  SGF P+I TYN ++ +
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y + G  +   ++  +M+++G  PD  +YT L+ G     +   A K  EEM   G +  
Sbjct: 371 YARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPN 430

Query: 573 VLDYN 577
           +  +N
Sbjct: 431 ICTFN 435



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 29/281 (10%)

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLG-------GWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +EA ++F KL+     P L TY V+L         W ++  L+++      M   G  PD
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDS------MKSSGVAPD 290

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  +N ++    +     +A ++FE MKA G SP+                  Y  L+  
Sbjct: 291 LYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD---------------KVTYNALLDV 335

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           +G  RR     ++LKEME  G  P  +TYN+LI       + DEA+ +  +MV+ G KP 
Sbjct: 336 YGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPD 395

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TY  ++  + +TG  +   KV++EM   GC P+  ++  LI    ++    E  K  E
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           E+        ++ +N   A   + G    +  + ++M+ +G
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 496



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 154/337 (45%), Gaps = 25/337 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++++ G+      +  + +EM   G +   +TF   ++A++      +A+AI+  M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
                   + T N +L  L R  L ++++ +  ++K  R  PN  TY  LL  +   K +
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEV 587

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI----KLFEVMKAKGPSPNVRS 420
                +  E+     +P  V    +L+ L+ +  +SD +    + F  ++ +G SP++ +
Sbjct: 588 ERMSALAEEIYSGIIEPQAV----LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
              M+               + +G RR +    ++L  +++ G  P   TYN+L+ +   
Sbjct: 644 LNAMV---------------SIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +  +++  I +E++  G KP I ++N ++ +Y + G  +   +++ EM   G  PD  +
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVIT 748

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           Y   I    S     EA   ++ M++ G K     YN
Sbjct: 749 YNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYN 785



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 115/282 (40%), Gaps = 54/282 (19%)

Query: 155 DGECDGNNSESEITSVSY-KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL--SH 211
           DG C  N    E+T  S   + A+ +E+ER+  + +E++S     +AVL +  + +    
Sbjct: 564 DGRCKPN----ELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKS 619

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+ +    F   R            + GF+ +  T N+M+SI GR R    MVS   E 
Sbjct: 620 DLLTETERAFLELR------------EQGFSPDITTLNAMVSIYGRRR----MVSKTNE- 662

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LP 330
                                        I   +    F   + T N L+    R++   
Sbjct: 663 -----------------------------ILNFIKDSGFTPSLTTYNSLMYMYSRTEHFE 693

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           K   +L + +     P++ ++  ++  +CR   + EA R++ EM D G  PDV+ +N  +
Sbjct: 694 KSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFI 753

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
                     +AI + + M   G  PN  +Y  +I  FCK N
Sbjct: 754 ASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLN 795


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 170/383 (44%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++++L    Q    V ++E+M   G+ L    F   M+ F    +   A
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F+ M K    A   T   L+  L R+   KEA+ +  +++ +    +  TYTVL+ G
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+V  + EA  V N+M+ K   P+VV +  + +GL K G    A +L   M +KG   N
Sbjct: 435 YCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN 494

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I   CK                     +   YT +I      + +D  + LL+
Sbjct: 495 IFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQ 554

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM ++G  P  +TYN L+    +    +   R+ + M+     P   TYN +MK Y    
Sbjct: 555 EMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEK 614

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +++  M+ +   P++N+Y +LI G        EA  +  EM+EKG +     YN
Sbjct: 615 NMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYN 674

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                L++  +      L +KMR
Sbjct: 675 ALIRLLNKKKKFTEARRLFEKMR 697



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 163/367 (44%), Gaps = 23/367 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   ++  + ++MS   R        +  +EM ++GL +   T+   +N    A E K+A
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             + + M          T   L++   +     EA L+ +K+ + R TPN+ TYT L  G
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++  A  + +EM  KG + ++  +N ++ GL K G    A++    M   G  P+
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT +I   C                    K     Y  L+ GF    R++    LL+
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M E+   P+  TYN+L+K   I+K       IYK M+     P  +TYN+++K + +  
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +       EMI +G     +SY  LI  L  + +  EA +  E+M ++ + A    YN
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYN 709

Query: 578 KFAADLS 584
            F  DLS
Sbjct: 710 -FYIDLS 715



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 159/378 (42%), Gaps = 34/378 (8%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           FC  GD            K G A +  TY ++++ L RA + +    +L+EM +KGL + 
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLF 337
             T+ + ++ +    +  +A  +   M + +    V T   L + L +   +    +LL 
Sbjct: 425 AVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLH 484

Query: 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           +        N+ TY  L+ G C+  NL +A R   +M + G KPDV  +  ++  L +  
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSK 544

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYT 437
           +   A  L + M  KG  P + +Y +++  FC                      N   Y 
Sbjct: 545 ELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYN 604

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+  +   + M    ++ K M  +   P+  TYN LIK     +   EA+  + EM+  
Sbjct: 605 SLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEK 664

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           GF+ T  +YN +++   +   +   R+++++M +     + + Y   I    ++D     
Sbjct: 665 GFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLEST 724

Query: 558 YKYLEEMLEKGMKAPVLD 575
               +E++E  +   + D
Sbjct: 725 LALCDELVEVTLVKSIAD 742



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 24/307 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N LL+ L  +   K+A  LFD++     P++ TY +++ G+C +  L  A ++ +EM  +
Sbjct: 257 NILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEMAAR 314

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G + + VA+  ++  L   G+ SDA+++ E M   G   +   +T ++  FC++      
Sbjct: 315 GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAA 374

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                         +   YT LI G      +     +L+EME++G   D +TY  LI  
Sbjct: 375 RNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDG 434

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             K+ KM  EA  ++ +MV+    P + TY  +     + G+     ++  EM  +G   
Sbjct: 435 YCKVGKM-TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL 493

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +Y  LI GL       +A + + +M E G+K  V  Y      L ++        L 
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553

Query: 597 QKMRFSG 603
           Q+M   G
Sbjct: 554 QEMLDKG 560



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 26/256 (10%)

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A LL    ++  +P+  +   +L   CR+  L EA +++ E+ +K    +  ++NI+L+ 
Sbjct: 211 APLLLRLRQYGISPSPESCNAVL---CRLP-LDEAVQLFQELPEK----NTCSYNILLKA 262

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L   G+  DA +LF+ M +    P+V +Y IM+  +C  +                ++  
Sbjct: 263 LCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLS---------------ELETA 304

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             LL EM  RG   + + Y ++I L+  +    +AVR+ ++MV  G       +  +M  
Sbjct: 305 IKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG 364

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + + G+    R  +DEM +RG   D  +YT LI GL       EA + L+EM +KG+   
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVD 424

Query: 573 VLDYNKFAADLSRAGR 588
            + Y        + G+
Sbjct: 425 AVTYTVLIDGYCKVGK 440



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 127/316 (40%), Gaps = 67/316 (21%)

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           + +Y      ++ N +L      +LP  EA  LF +L  +   N  +Y +LL   C    
Sbjct: 217 LRQYGISPSPESCNAVL-----CRLPLDEAVQLFQELPEK---NTCSYNILLKALCTAGR 268

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A ++++EM      PDVV + IM+ G   + +   AIKL   M A+G   N  +YT 
Sbjct: 269 IKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I   C +                    +AAV+T +++GF  +  +    +   EM++RG
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              DG+T                                   Y  ++    + G  +   
Sbjct: 386 LAADGVT-----------------------------------YTALINGLCRAGELKEAE 410

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +V  EM  +G   D  +YTVLI G     +  EA+    +M++K +   V+ Y   +  L
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 584 SRAGRSYVLDELAQKM 599
            + G     +EL  +M
Sbjct: 471 CKQGDVCAANELLHEM 486


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 175/370 (47%), Gaps = 19/370 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  +  +++ M   G+   + T+   +++       ++A  +FE 
Sbjct: 257 TYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEE 316

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S+ P+EA  +  +++   F P++ TY  L+  + R   
Sbjct: 317 MKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGL 376

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  + ++M+ KG KPDV  +  +L G  K GK   A+K+FE M+  G  PN+     
Sbjct: 377 LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI----- 431

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                C  NA     LI   GNR     +  + +E++   C PD +T+N L+ +     M
Sbjct: 432 -----CTFNA-----LIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGM 481

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   ++KEM R+GF P   T+N ++ +Y + G ++    ++  M+  G  PD ++Y  
Sbjct: 482 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNA 541

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K L EM +   K   L Y       +       +  LA+++ +SG
Sbjct: 542 VLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEI-YSG 600

Query: 604 KFEVSNVLAR 613
             E   VL +
Sbjct: 601 IIEPQAVLLK 610



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 168/399 (42%), Gaps = 57/399 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GFA +  TYNS++S   R    +  + +  +M +KG+   + T+   ++ F    +   A
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYA 415

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + +FE M     +  + T N L++  G      E   +F+++K     P++ T+  LL  
Sbjct: 416 MKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAV 475

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +     E   V+ EM   GF P+    N ++    + G    A+ ++  M   G +P+
Sbjct: 476 FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPD 535

Query: 418 VRSYTIMI--------WKF------------CKQNAAVYTCLITGFGNRRRMD------- 450
           + +Y  ++        W+             CK N   Y  L+  + N + ++       
Sbjct: 536 LSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAE 595

Query: 451 ------------------IVY---DLLKEME-------ERGCPPDGLTYNALIKLMKIQK 482
                             +VY   DLL E E       E+G  PD  T NA++ +   ++
Sbjct: 596 EIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRR 655

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M  +   I   +  SGF P++ TYN +M  Y +T ++E    +  E+I +G  PD  S+ 
Sbjct: 656 MVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFN 715

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            +I       R  EA +   EM + G+   V+ YN F A
Sbjct: 716 TVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIA 754



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 25/305 (8%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           KGL+  +  ++A+  F   + R+   +I          + V  I  +L   GR+     A
Sbjct: 155 KGLVFYKKNELALCVFYFVRNREDFASILS-------NSVVAVIISVLGKEGRASFA--A 205

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            LL D        ++  YT L+  +       EA  V+ ++ ++G +P ++ +N++L   
Sbjct: 206 SLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY 265

Query: 394 LKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
            K+G     I  L + MK+ G +P++ +Y  +I   C++  ++Y             +  
Sbjct: 266 GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISS-CRR-GSLY-------------EEA 310

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            ++ +EM+  G  PD +TYNAL+ +    + P EA+ + KEM  SGF P+I TYN ++ +
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y + G  +   ++  +M+++G  PD  +YT L+ G     +   A K  EEM   G +  
Sbjct: 371 YARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPN 430

Query: 573 VLDYN 577
           +  +N
Sbjct: 431 ICTFN 435



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 29/281 (10%)

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLG-------GWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +EA ++F KL+     P L TY V+L         W ++  L+++      M   G  PD
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDS------MKSSGVAPD 290

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  +N ++    +     +A ++FE MKA G SP+                  Y  L+  
Sbjct: 291 LYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD---------------KVTYNALLDV 335

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           +G  RR     ++LKEME  G  P  +TYN+LI       + DEA+ +  +MV+ G KP 
Sbjct: 336 YGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPD 395

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TY  ++  + +TG  +   KV++EM   GC P+  ++  LI    ++    E  K  E
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           E+        ++ +N   A   + G    +  + ++M+ +G
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 496



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 153/337 (45%), Gaps = 25/337 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++++ G+      +  + +EM   G +   +TF   ++A++      +A+AI+  M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
                   + T N +L  L R  L ++++ +  ++K  R  PN  TY  LL  +   K +
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEV 587

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI----KLFEVMKAKGPSPNVRS 420
                +  E+     +P  V    +L+ L+ +  +SD +    + F  ++ +G SP++ +
Sbjct: 588 ERMSALAEEIYSGIIEPQAV----LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
              M+               + +G RR +    ++L  +++ G  P   TYN+L+ +   
Sbjct: 644 LNAMV---------------SIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +  +++  I +E++  G KP I ++N ++ +Y + G  +   +++ EM   G  PD  +
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVIT 748

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           Y   I    S     EA   ++ M++   K     YN
Sbjct: 749 YNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYN 785



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 54/282 (19%)

Query: 155 DGECDGNNSESEITSVSY-KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL--SH 211
           DG C  N    E+T  S   + A+ +E+ER+  + +E++S     +AVL +  + +    
Sbjct: 564 DGRCKPN----ELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKS 619

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+ +    F   R            + GF+ +  T N+M+SI GR R    MVS   E 
Sbjct: 620 DLLTETERAFLELR------------EQGFSPDITTLNAMVSIYGRRR----MVSKTNE- 662

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LP 330
                                        I   +    F   + T N L+    R++   
Sbjct: 663 -----------------------------ILNFIKDSGFTPSLTTYNSLMYMYSRTEHFE 693

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           K   +L + +     P++ ++  ++  +CR   + EA R++ EM D G  PDV+ +N  +
Sbjct: 694 KSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFI 753

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
                     +AI + + M      PN  +Y  +I  FCK N
Sbjct: 754 ASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLN 795


>gi|449445204|ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 208/452 (46%), Gaps = 28/452 (6%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P +I+ +C++I    SLD  +E  L++ GI+ +   V +VL+        + +FF W+G 
Sbjct: 71  PFQIKLMCEIIANSPSLD--VEKALEDTGIHATQQDVEEVLKLSYRFPGSSVKFFRWSGR 128

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           K    H+   +N ++ +LG+   F+ M   ++ M  +GLLS+ TF    +++  A   K 
Sbjct: 129 KLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKSMKSEGLLSLATFASVFSSYVVANRVKD 188

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+  FE+M+ Y     V   N LL  + R    K+A       K +  P+L +Y ++L G
Sbjct: 189 AIMAFEVMDTYGCPHDVVAFNSLLSAICRDGNTKDADEFLQIAKRKIRPDLDSYAIVLEG 248

Query: 358 WCRVKNLMEAGRVWNEMIDK-GFKP-DVVAHNIMLEGLLK-IGKRSDAIKLFEVMKAKGP 414
           W    N + A + + EMI++ G+ P +  A+N  L  LL+       A+  F+ +K K  
Sbjct: 249 WESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNSFLCVLLRDPNGLQRALVTFQRLKDKMC 308

Query: 415 SPNVRSYTIM---------------IWKFCKQ------NAAVYTCLITGFGNRRRMDIVY 453
            P  + + +                +W    Q      +  ++  +I    ++   D   
Sbjct: 309 YPGFKFFKLALDECIKCGDIKSGKYLWNEIIQSINFQPDTYMFNSMIALCCHQNDTDEAR 368

Query: 454 DLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            LL EM   G  P+  TYN L + L+K +K+ D A  I+ EM+++ F P+    N  ++ 
Sbjct: 369 RLLDEMICFGAFPNAETYNLLFQFLLKGRKLRD-ASAIFDEMIKNEFIPSHANCNAAIRI 427

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y ++ +     KVW  M++      + +   LI  L  Q R  EA KY  EM+++ +K  
Sbjct: 428 YIESQDPNGAIKVWKCMLKNYDSDLEETGNFLIVRLQDQKRLPEAVKYAHEMVDRAIKLK 487

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
                K    L    +  + DEL  K++ S K
Sbjct: 488 DSTLAKLKHSLFEVRKESMYDELMVKLKCSEK 519


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 165/330 (50%), Gaps = 27/330 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++M  L R  +       L+ M  + L+  + ++   +  ++      +A+ +F  +
Sbjct: 314 TYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL 373

Query: 306 NKYKFKAGVDTINCLLE------NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
                   V T N L++      NL  +K  K+     D +KH   P++ T+T+L+ G+C
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKD-----DMIKHGLCPDVVTFTILVRGFC 428

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           ++ NL  A  +++EM+ +G KPD +A+   + G LK+G  S A  + E MKA+G  P++ 
Sbjct: 429 QMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLI 488

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
           +Y ++I   CK             GN    D   +L+++M   G  PD +TY ++I    
Sbjct: 489 TYNVLINGLCK------------LGN---FDDANELVQKMRLEGIVPDHVTYTSIIHAHL 533

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           I  +  +A  ++ +M++ G  P++ TY +++ SY   G  +  +K +DEM  +G  P+  
Sbjct: 534 ISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVI 593

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +Y  LI GL  ++    AY    EM  KG+
Sbjct: 594 TYNALIYGLCKENMMDVAYNLFAEMESKGV 623



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 196/448 (43%), Gaps = 43/448 (9%)

Query: 168 TSVSYKSTADPR----EIERVCKVID--ELFSLDRNMEAVLDECGINLSHNLVVDVLE-- 219
           T V++ +  D R    E+ R  +V+D   +F  D N          ++S+N++V+ L   
Sbjct: 206 TIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPN----------DVSYNVLVNGLSGK 255

Query: 220 -RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLL 277
             F  A+              G   ++ TYN ++    +   FE    +  EM G   L 
Sbjct: 256 GEFDRAKE-----LIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALP 310

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ T+   M +         A    ++M        + + N L+    R     EA LLF
Sbjct: 311 TVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLF 370

Query: 338 DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +L+ +   P++ TY  L+ G CR  NL  A  + ++MI  G  PDVV   I++ G  ++
Sbjct: 371 SELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQM 430

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G    A +LF+ M ++G  P+  +YT  I    K             GN  +    + + 
Sbjct: 431 GNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK------------LGNPSK---AFGMK 475

Query: 457 KEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           +EM+  G PPD +TYN LI  L K+    D+A  + ++M   G  P   TY  I+ ++  
Sbjct: 476 EEMKAEGFPPDLITYNVLINGLCKLGNF-DDANELVQKMRLEGIVPDHVTYTSIIHAHLI 534

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           +G      +V+ +M+++G  P   +YTVLI     + R   A KY +EM +KG+   V+ 
Sbjct: 535 SGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVIT 594

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           YN     L +     V   L  +M   G
Sbjct: 595 YNALIYGLCKENMMDVAYNLFAEMESKG 622



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 184/461 (39%), Gaps = 74/461 (16%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMG 272
           VL   +H    A RFF W   +P F  +   + +++ IL +       +  M   +E   
Sbjct: 57  VLNSVKHRPLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKV 116

Query: 273 EKGLL--------------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + G+L              S++   + +  FA     +K + +F  M        V   N
Sbjct: 117 DGGVLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCN 176

Query: 319 CLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            +L+ L    +  E + ++   +K +  P + T+  ++   C+   +  A  V + M   
Sbjct: 177 RVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMF 236

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G  P+ V++N+++ GL   G+   A +L E M   G   +  +Y  +I  FCK+      
Sbjct: 237 GCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEA 296

Query: 432 -------------------NAAVYT-CLITGFGNRRR-MDIVYD---------------- 454
                              N  +Y+ C +    + RR +D++ +                
Sbjct: 297 NDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYG 356

Query: 455 ------------LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                       L  E+  +   P  +TYN LI         D A  +  +M++ G  P 
Sbjct: 357 YSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPD 416

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + T+ ++++ + Q GN  M ++++DEM+ RG  PD  +YT  I G +      +A+   E
Sbjct: 417 VVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKE 476

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EM  +G    ++ YN     L + G     +EL QKMR  G
Sbjct: 477 EMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG 517



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 25/181 (13%)

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L K  ++  D LK    P++ TYTVL+  +     L  A + ++EM DKG  P+V+ +N 
Sbjct: 538 LRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNA 597

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           ++ GL K      A  LF  M++KG SPN  +YTI+I     +N+           N + 
Sbjct: 598 LIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI----NENS-----------NLQY 642

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIK----------LMKIQKMPDEAVRIYKEMVRSG 498
                 L K+M +R   PD  T++AL+K          +++++ +P   V I    +  G
Sbjct: 643 WQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAVLRLENLPLAIVEINSTWIAEG 702

Query: 499 F 499
           F
Sbjct: 703 F 703


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 159/326 (48%), Gaps = 22/326 (6%)

Query: 267 MLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           + +EM   GL   E T+   M+ +    +R+K  A+FE M +   +  + T NCL+    
Sbjct: 60  VFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWC 119

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           R+   + A+ LFD++  R    N+ +Y  L+ G CR   L +A ++ + M  +G +P ++
Sbjct: 120 RTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSII 179

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
             N++++G  K GK S+A+  F  MKA G  P+  +Y ++I  FC+              
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      YT LI  F     M   +++L  ME+ G   D  TY  L++ + ++   
Sbjct: 240 KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNM 299

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A ++++ M   G +P+   Y+M++  Y + G+     K+  EM ++G  P+  SY + 
Sbjct: 300 KDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLT 359

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMK 570
           I  L   D+  EA   L++M+  G++
Sbjct: 360 IRVLCKDDKCQEAEALLDDMVRAGLQ 385



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 336 LFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LF++++     PNL TY  L+G WCR      A  +++EM  +G   +VV++N ++ GL 
Sbjct: 95  LFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLC 154

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           + GK  DA KL ++M+ +G  P++ ++ +               L+ G+G   +M     
Sbjct: 155 RHGKLWDAAKLLDMMRTEGTRPSIITFNL---------------LVDGYGKAGKMSNALP 199

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
              +M+  G  P  +TYN LI      +    A R   +M   G +PT  TY +++ S+ 
Sbjct: 200 FFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +  +     ++   M + G   D ++Y VL+  L  +    +A K  + M EKG++   +
Sbjct: 260 RENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNV 319

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y+       R G SY   +L  +MR  G
Sbjct: 320 IYDMMIYGYGREGSSYKALKLIMEMRQKG 348



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 23/286 (8%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++T  T L+ G C+  ++ EA RV++EM   G  P+ V +  ++ G    G+R     LF
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
           E M+  G  PN+ +Y  +I ++C+                    +N   Y  LI G    
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            ++     LL  M   G  P  +T+N L+    K  KM + A+  + +M  +GF+P+  T
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSN-ALPFFNQMKAAGFQPSAVT 215

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YNM++  + +  +     +   +M  RG  P   +YT+LI     ++  G+A++ L  M 
Sbjct: 216 YNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGME 275

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           + G++     Y      L   G      +L Q M   G  E SNV+
Sbjct: 276 KAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKG-VEPSNVI 320



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 134/298 (44%), Gaps = 17/298 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N  TYN ++    R  +FE   S+ +EM  +G++ ++ ++   +       +  
Sbjct: 101 RGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLW 160

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  + ++M     +  + T N L++  G++     A   F+++K   F P+  TY +L+
Sbjct: 161 DAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+CR +++  A R  ++M ++G +P  V + I+++   +      A ++   M+  G  
Sbjct: 221 AGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLE 280

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +  +Y +++   C +            GN   M     L + M E+G  P  + Y+ +I
Sbjct: 281 VDAHTYGVLVRALCME------------GN---MKDARKLFQSMGEKGVEPSNVIYDMMI 325

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
                +    +A+++  EM + G  P   +Y + ++   +    +    + D+M+R G
Sbjct: 326 YGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAG 383



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 6/201 (2%)

Query: 415 SPNVRSYTIMIWKFCKQNAAVY-----TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           + +VRS   M+ +  K   A       T L+ G      +     +  EM   G  P+ +
Sbjct: 15  AGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEV 74

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TY AL+         ++   +++EM R G +P ++TYN ++  + +TG +E  R ++DEM
Sbjct: 75  TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             RG   +  SY  LI GL    +  +A K L+ M  +G +  ++ +N       +AG+ 
Sbjct: 135 PVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKM 194

Query: 590 YVLDELAQKMRFSGKFEVSNV 610
                   +M+ +G F+ S V
Sbjct: 195 SNALPFFNQMKAAG-FQPSAV 214


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 169/401 (42%), Gaps = 52/401 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + +TY+++M  LGR R   T++ +LEEM   GL  ++ T+ I +     A     A
Sbjct: 222 GLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDA 281

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             I + M        V T   L++ L  +    +A+ L+ K++     P+L TY  L+  
Sbjct: 282 YGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSK 341

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +    +L    R W+EM   G+ PDVV + I++E L K GK   A  + +VM+ +G  PN
Sbjct: 342 FGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPN 401

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y                 LI+G  N RR+D   +L   ME  G  P   +Y   I  
Sbjct: 402 LHTYNT---------------LISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDY 446

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIH--------------------------------- 504
                 P++A+  +++M + G  P+I                                  
Sbjct: 447 YGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPD 506

Query: 505 --TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYNM+MK Y + G  +   K+  EM+  GC PD      LI  L    R  EA++   
Sbjct: 507 SVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFG 566

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            + +  +   V+ YN     L + G+     +L   M+ SG
Sbjct: 567 RLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG 607



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
            G   N  TYN ++   G++++ + +  +  EM  +G   ++ T  I ++A   +    KA
Sbjct: 818  GCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKA 877

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
            + ++  +    F     T   L+  L ++   +EA  +F+++  ++  PN   Y +L+ G
Sbjct: 878  LDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILING 937

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            + +  N+  A  ++  MI +G +PD+ ++ I++E L   G+  DA+  FE +K  G  P+
Sbjct: 938  FGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPD 997

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              SY +MI                G G  RR++    L  EM+ RG  P+  TYNALI  
Sbjct: 998  TVSYNLMI---------------NGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILH 1042

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                 M D+A ++++E+   G +P + TYN +++ + ++GN +    V+ +M+  GC P+
Sbjct: 1043 FGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102

Query: 538  DNSYTVL 544
              ++  L
Sbjct: 1103 AGTFAQL 1109



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 158/335 (47%), Gaps = 25/335 (7%)

Query: 294  ERKKAVAIFELMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNL 348
            ++KKA+   +L +K+    G     ++ NCL++ L    + + A  LF ++K+    PN+
Sbjct: 764  KQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNI 823

Query: 349  TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
             TY +LL    + K + E   ++NEM+ +G KP+++ HNI++  L+K    + A+ L+  
Sbjct: 824  FTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYE 883

Query: 409  MKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRR 448
            + +   SP   +Y  +I                       CK N A+Y  LI GFG    
Sbjct: 884  IISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGN 943

Query: 449  MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
            ++I  DL K M + G  PD  +Y  L++ + +    D+AV  ++E+  +G  P   +YN+
Sbjct: 944  VNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNL 1003

Query: 509  IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            ++    ++   E    ++ EM  RG  P+  +Y  LI    +     +A K  EE+   G
Sbjct: 1004 MINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMG 1063

Query: 569  MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            ++  V  YN      S++G       + +KM   G
Sbjct: 1064 LEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVG 1098



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 159/354 (44%), Gaps = 19/354 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + GF  N+ +YN ++  L +    +  + + + M  +GL  SM+T+   M A    ++  
Sbjct: 185 QAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTG 244

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL 355
             + + E M     +  + T    +  LGR+    +A  +   ++     P++ TYTVL+
Sbjct: 245 TIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLI 304

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C    L +A  ++ +M     KPD+V +  ++      G      + +  M+A G +
Sbjct: 305 DALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYA 364

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V +YTI++   CK                 ++D  +D+L  M  RG  P+  TYN LI
Sbjct: 365 PDVVTYTILVEALCKSG---------------KVDQAFDMLDVMRVRGIVPNLHTYNTLI 409

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             L+ ++++ DEA+ ++  M   G  PT ++Y + +  Y + G+ E     +++M +RG 
Sbjct: 410 SGLLNLRRL-DEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGI 468

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P   +    +  L    R  EA     ++   G+    + YN      S+AG+
Sbjct: 469 MPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQ 522



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 32/292 (10%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTTYTVL 354
           +F+LM K       +T   + + L      ++A     K++        ++ N   Y +L
Sbjct: 144 VFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLL 203

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKA 411
             G+C+     EA +V+  MI +G KP +  ++ ++  L   G+R D    + L E M+ 
Sbjct: 204 QPGFCK-----EALKVYKRMISEGLKPSMKTYSALMVAL---GRRRDTGTIMDLLEEMET 255

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G  PN+ +YTI I                  G   R+D  Y +LK ME+ GC PD +TY
Sbjct: 256 LGLRPNIYTYTICIRVL---------------GRAGRIDDAYGILKTMEDEGCGPDVVTY 300

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
             LI  +      D+A  +Y +M  S  KP + TY  +M  +   G+ E  ++ W EM  
Sbjct: 301 TVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEA 360

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            G  PD  +YT+L+  L    +  +A+  L+ M  +G+   +  YN   + L
Sbjct: 361 DGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGL 412



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 161/407 (39%), Gaps = 57/407 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY   + +LGRA + +    +L+ M ++G    + T+ + ++A  AA +  KA
Sbjct: 257 GLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKA 316

Query: 299 ----------------VAIFELMNKYK-------------------FKAGVDTINCLLEN 323
                           V    LM+K+                    +   V T   L+E 
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEA 376

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L +S    +A  + D ++ R   PNL TY  L+ G   ++ L EA  ++N M   G  P 
Sbjct: 377 LCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPT 436

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
             ++ + ++   K+G    A+  FE MK +G  P++ +    ++   +            
Sbjct: 437 AYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFN 496

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    ++  Y  ++  +    ++D    LL EM   GC PD +  N+LI  +    
Sbjct: 497 DIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAG 556

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             DEA +++  +      PT+ TYN+++    + G       ++  M   GC P+  ++ 
Sbjct: 557 RVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFN 616

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            L+  L   D    A K    M        VL YN     L + GR+
Sbjct: 617 ALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRA 663



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 191/461 (41%), Gaps = 69/461 (14%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAH-N 244
           +DE   L  NME+ L       S+ L +D   +     +    F      G  P  A  N
Sbjct: 418 LDEALELFNNMES-LGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACN 476

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIF 302
           +  Y+  ++ +GR R+ + + + +   G    LS +  T+ + M  ++ A +  KA  + 
Sbjct: 477 ASLYS--LAEMGRIREAKDIFNDIHNCG----LSPDSVTYNMMMKCYSKAGQIDKATKLL 530

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRV 361
             M     +  +  +N L++ L ++    EA  +F +LK  +  P + TY +L+ G  + 
Sbjct: 531 TEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKE 590

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L++A  ++  M + G  P+ V  N +L+ L K      A+K+F  M     SP+V +Y
Sbjct: 591 GKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY 650

Query: 422 TIMIWKFCKQNAAVYT-------------------CLITGFGNRRRMD----IVYDLL-- 456
             +I+   K+  A Y                     L+ G     R++    IV + +  
Sbjct: 651 NTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQ 710

Query: 457 --------------------KEMEERGCPPDGLTYNA----------LIKLMKIQKMPDE 486
                                E+EE     +GL  N+          LI+++  QK   +
Sbjct: 711 SGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALD 770

Query: 487 AVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           A +++ +  +S G  PT  +YN +M         E   K++ EM   GCCP+  +Y +L+
Sbjct: 771 AKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLL 830

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
                  R  E ++   EML +G K  ++ +N   + L ++
Sbjct: 831 DAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKS 871



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 160/411 (38%), Gaps = 64/411 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA----AAKER 295
           G + +S TYN MM    +A Q +    +L EM  +G    E   I +N+       A   
Sbjct: 502 GLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGC---EPDIIVVNSLIDTLYKAGRV 558

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A  +F  +   K    V T N L+  LG+     +A  LF  +K     PN  T+  L
Sbjct: 559 DEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNAL 618

Query: 355 LGGWCR-----------------------------VKNLMEAGRV-----WNEMIDKGFK 380
           L   C+                             +  L++ GR      +   + K   
Sbjct: 619 LDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLS 678

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIK--------------------LFEVMKAKGPSPNVRS 420
           PD V    +L G++K G+  DAIK                    L E +  +       S
Sbjct: 679 PDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAIS 738

Query: 421 YT--IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
           +   ++    C+ +  +   +      ++ +D      K  +  G  P   +YN L+  +
Sbjct: 739 FAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGL 798

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
               + + A++++ EM  +G  P I TYN+++ ++ ++   +   ++++EM+ RGC P+ 
Sbjct: 799 LGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNI 858

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            ++ ++I  L+  +   +A     E++          Y      L +AGRS
Sbjct: 859 ITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRS 909


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 195/445 (43%), Gaps = 34/445 (7%)

Query: 161 NNSESEITSVSYKSTADPREIERVCKVIDELFSLDR---------NMEAVLDECGINLSH 211
           N + S     + +S+A  + I R  K   +   +D          N+EA L+    +LS 
Sbjct: 50  NRTSSNTPEETGESSASAKTIPRYTKWTPQFARVDEVLKIVQKTGNVEAALESWDKSLSA 109

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPG-FAHNSRTYNSMMSILGRARQFETMVSMLEE 270
             +V VL       + A  FF W   +P  +  N  TYN M+ IL   RQ E    ++EE
Sbjct: 110 KNIVTVLNNINRWEK-ALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEE 168

Query: 271 MGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M  +G+     TF   +N     ++ ++A+  FE M          T N +++  GR   
Sbjct: 169 MTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGR 228

Query: 330 PKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             EA  L++KLK   +  +  TY  +   + R  +     ++  EM D G  P+ V  N 
Sbjct: 229 VNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNT 288

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA--------------- 433
           ++  L K GK + A K+F  M+  G SP   + +I++  + +  A               
Sbjct: 289 LMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEG 348

Query: 434 -----AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                AVY  L+       R++   D+LKEM+  GC PD LTY   +     + M D A 
Sbjct: 349 WKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           R++ ++V    KP    + +++++    G  E   K++DEM+  GCC  D   + ++   
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSC 468

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPV 573
           ++  +S +    + + L+K   AP+
Sbjct: 469 MAMAKSDDERLAILDCLDK-FNAPL 492



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 130/284 (45%), Gaps = 18/284 (6%)

Query: 296 KKAVAIFELMNKYK--FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
           +KA+A FE +      ++    T N +L+ L   +  + ++ L +++  R   P+  T++
Sbjct: 123 EKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFS 182

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+    R +   EA + +  M  +G  PD V +N +++   ++G+ ++A++L+E +K+ 
Sbjct: 183 TLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKS- 241

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                      + WK    +   Y  +   +        +  L++EM + G  P+ +  N
Sbjct: 242 -----------VNWKL---DTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMN 287

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+  +      ++A +++ EM  SG  PT  T +++++ Y + G Y+   +V++ +   
Sbjct: 288 TLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTE 347

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G   D   Y  L+   +   R  +A   L+EM   G     L Y
Sbjct: 348 GWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTY 391



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 21/290 (7%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           I  +L N+ R +   +A   F+ LK R   +  N  TY V+L      + L  + ++  E
Sbjct: 112 IVTVLNNINRWE---KALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEE 168

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M  +G +PD    + ++    +  +  +A+K FE MK++G  P+                
Sbjct: 169 MTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPD---------------E 213

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  +I  +G   R++   +L ++++      D +TY A+  +          +++ +E
Sbjct: 214 VTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQE 273

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M  SG  P     N +M +  + G     +KV++EM   G  P   + ++L+        
Sbjct: 274 MRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGA 333

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +A++  E +  +G K  V  YN         GR    +++ ++M+ +G
Sbjct: 334 YDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAG 383


>gi|449491189|ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Cucumis sativus]
          Length = 450

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 181/386 (46%), Gaps = 28/386 (7%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           N     V + L+ + +  + ++ FF W   +  F H + TYN M+ ILG+  +F+    +
Sbjct: 44  NFDPFTVREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVL 103

Query: 268 LEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  M +    S +  TF+I    +A A    +A+A +E + ++K +      N L++ L 
Sbjct: 104 INRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCN-LIDALC 162

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            S+   EAQ L      +   + +T  + ++L GW ++    +    W EM  KG + D+
Sbjct: 163 ESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDL 222

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------- 428
            +++I ++   K GK   A+KL++ MK KG   +V +Y  +I                  
Sbjct: 223 HSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHE 282

Query: 429 -----CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N      +I  F    R    + +L +M +R C P+ +TY+   + ++    
Sbjct: 283 MKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLE---K 339

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
           P E + ++  M++ G  P + TY M+++ + + G       VW++M   GC P++ +Y  
Sbjct: 340 PKEILVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNA 399

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGM 569
           LI  L+ +     A KY EEM+ KG+
Sbjct: 400 LIDALVEKGMIDMARKYDEEMVAKGL 425



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +   YN+++  +G +   +    +  EM E G   ++ T    +  F      K
Sbjct: 250 KKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFK 309

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
            A  + + M K   +  V T +C   +L +   PKE  +LFD++ K+   P + TY +LL
Sbjct: 310 DAHMMLDQMLKRDCQPNVITYHCFFRSLEK---PKEILVLFDRMIKYGVHPKMDTYVMLL 366

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + R   L     VWN+M + G  P+  A+N +++ L++ G    A K  E M AKG S
Sbjct: 367 RKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLS 426

Query: 416 PNVR 419
           P +R
Sbjct: 427 PKLR 430


>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Glycine max]
          Length = 572

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 19/295 (6%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A+ + E M  + F     T N L++ L     L +  QLL    K    PN  TY+ LL 
Sbjct: 153 AIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLE 212

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
              + + + EA ++ +++I KG +P++V++N++L GL K G+  +AIKLF+ +  KG SP
Sbjct: 213 AAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSP 272

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V S+ I++   C +                R +   +LL EM++   PP  +TYN LI 
Sbjct: 273 SVVSFNILLRSLCYEG---------------RWEEANELLAEMDKEDQPPSVVTYNILIT 317

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            + +    ++A ++  EM RSGFK +  +YN I+    + G  ++  K  D+MI R C P
Sbjct: 318 SLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHP 377

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSY 590
           ++ +Y+  I  L  Q +  EA+ ++ + L      P+ D Y    A L R G +Y
Sbjct: 378 NEGTYSA-ISMLSEQGKVQEAF-FIIQSLGSKQNFPMHDFYKNLIASLCRKGNTY 430



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 171/383 (44%), Gaps = 60/383 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  N+ TYN+++  L         + +L+ + +KGL+    F  +    AA KER    
Sbjct: 164 GFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIP-NAFTYSFLLEAAYKERGVDE 222

Query: 300 AIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           A+ +L++    K G   +   N LL  L +    +EA  LF +L  + F+P++ ++ +LL
Sbjct: 223 AM-KLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILL 281

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C      EA  +  EM  +   P VV +NI++  L   G+   A K+ + M   G  
Sbjct: 282 RSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFK 341

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCL---------------I 440
            +  SY  +I + CK+                    N   Y+ +               I
Sbjct: 342 ASATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTYSAISMLSEQGKVQEAFFII 401

Query: 441 TGFGNRRRMDI-------------------VYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
              G+++   +                    + +L EM + G  PD  TY++LI+ M  +
Sbjct: 402 QSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCRE 461

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
            M DEA++I++ +  +  +P I  YN ++  + +    ++  +++  M+ +GC P++N+Y
Sbjct: 462 GMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTY 521

Query: 542 TVLIGGLISQDRSGEAYKYLEEM 564
           T+L+ GL  ++ +  A   ++E+
Sbjct: 522 TILVEGLAFEEETDIAADLMKEL 544



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 20/263 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P +   T LL   C+     +A RV   M+  G  PD  ++  ++  L K G    AI+L
Sbjct: 97  PEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQL 156

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
            E M+  G   N  +Y  ++   C                      NA  Y+ L+     
Sbjct: 157 VEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYK 216

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            R +D    LL ++  +G  P+ ++YN L+  +  +   +EA+++++E+   GF P++ +
Sbjct: 217 ERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVS 276

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +N++++S    G +E   ++  EM +    P   +Y +LI  L    R+ +A+K L+EM 
Sbjct: 277 FNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMT 336

Query: 566 EKGMKAPVLDYNKFAADLSRAGR 588
             G KA    YN   A L + G+
Sbjct: 337 RSGFKASATSYNPIIARLCKEGK 359



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           ++ KG KP+V     +L  L K  K   A+++ E+M   G  P+  SYT ++   CK+  
Sbjct: 90  LVGKGQKPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGN 149

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y                  L+++ME  G P + +TYN L+K + +    ++++++   
Sbjct: 150 VGYAI---------------QLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDR 194

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           + + G  P   TY+ ++++ ++    +   K+ D++I +G  P+  SY VL+ GL  + R
Sbjct: 195 LTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGR 254

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           + EA K  +E+  KG    V+ +N     L   GR    +EL  +M
Sbjct: 255 TEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEM 300


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 171/368 (46%), Gaps = 17/368 (4%)

Query: 238 KPGFAHNSRTYNSMMSILG-RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           K GF  +  T+N++++ L    R  E M  +   M      ++ T  + +N      +  
Sbjct: 167 KLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTS 226

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
            A+   + M +   +  V + + ++++L +++L  EA  LF  ++    +P + TY  L+
Sbjct: 227 AAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLI 286

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      +A  ++ EM++   KPDVV  +I+++ L K G   +A+ +F  M      
Sbjct: 287 YGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAME 346

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ +Y+ +I   CK +    +                 LL EM  R   PD +T++  +
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESS---------------TLLNEMLSRNIRPDVVTFSIWV 391

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            +   + M  EA  I   M+  G +P + TYN +M  Y      +  RKV+D M+ +GC 
Sbjct: 392 DVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCA 451

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           PD  SY +LI G    +R  EA +  +EM  KG+    + +    + L +AGR Y   EL
Sbjct: 452 PDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKEL 511

Query: 596 AQKMRFSG 603
            +KM   G
Sbjct: 512 FKKMGSHG 519



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 171/360 (47%), Gaps = 22/360 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           G +P    ++   N +  I   +     M  M+E   E  ++S   + I +++    +  
Sbjct: 204 GYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVS---YSIIIDSLCKNRLV 260

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVL 354
            +AV +F  M        V T N L+  +  S   K+A +LF + L+    P++ T+++L
Sbjct: 261 NEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSIL 320

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+   ++EA  V+ +MI    +PD+V ++ ++ G+ K     ++  L   M ++  
Sbjct: 321 VDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI 380

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P+V +++I +  FCK+          G  +  +      ++  M ERG  P+ +TYN+L
Sbjct: 381 RPDVVTFSIWVDVFCKK----------GMVSEAQ-----SIINLMIERGLRPNVVTYNSL 425

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +    +    DEA +++  MV  G  P + +YN+++K Y ++   +  ++++DEM  +G 
Sbjct: 426 MDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGL 485

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++T LI GL    R   A +  ++M   G    ++ Y+   +   + G    LDE
Sbjct: 486 TPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGH---LDE 542



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 170/351 (48%), Gaps = 24/351 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +S+++++D L + R        F+       G +    TYNS++  +  + Q++    + 
Sbjct: 245 VSYSIIIDSLCKNRLVNEAVDLFY--HMRSIGISPTVVTYNSLIYGMCNSGQWKQASILF 302

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           +EM E  +   + TF I ++A        +A+++F  M +   +  + T + L+  + +S
Sbjct: 303 KEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKS 362

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            L KE+  L +++  R   P++ T+++ +  +C+   + EA  + N MI++G +P+VV +
Sbjct: 363 SLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTY 422

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N +++G     +  +A K+F++M  KG +P+V SY I+I  +CK                
Sbjct: 423 NSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH 482

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N+  +T LI+G     R     +L K+M   GCPPD +TY+ L+         DE
Sbjct: 483 KGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDE 542

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           A+ +++ + +S  KP      +++    + G  E  ++++  +      PD
Sbjct: 543 ALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLG 356
           A+A F  M        +   N LL  L R K       ++ K++    + ++ T T+L+ 
Sbjct: 88  ALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILIN 147

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C +  +     V  ++   GFKP ++  N ++ GL   G+  +A++  + + ++G  P
Sbjct: 148 CLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQP 207

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            V ++T+++   CK               +    IV+  +K+M E  C P+ ++Y+ +I 
Sbjct: 208 TVYTHTMIVNGLCKI-------------GKTSAAIVW--MKKMVELDCEPEVVSYSIIID 252

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +   ++ +EAV ++  M   G  PT+ TYN ++     +G ++    ++ EM+     P
Sbjct: 253 SLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKP 312

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D  ++++L+  L  +    EA     +M++  M+  ++ Y+     + ++
Sbjct: 313 DVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKS 362



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 15/226 (6%)

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           N  +A   +N+M+     P +   N +L  L+++      + ++  M+  G S +V + T
Sbjct: 84  NFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLT 143

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           I+I   C  +       + G G        + +L ++ + G  P  +T+N LI  + I+ 
Sbjct: 144 ILINCLCHLH-------LVGLG--------FSVLGKIFKLGFKPSIITFNTLINGLCIEG 188

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              EA+     ++  G++PT++T+ MI+    + G          +M+   C P+  SY+
Sbjct: 189 RIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYS 248

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++I  L       EA      M   G+   V+ YN     +  +G+
Sbjct: 249 IIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQ 294



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYNS+M       Q +    + + M  KG    + ++ I +  +  ++   +A
Sbjct: 414 GLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEA 473

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F+ M+         T   L+  L ++  P  A+ LF K+  H   P+L TY+ LL G
Sbjct: 474 KQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSG 533

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  +L EA  ++  +     KP+ V   I+L G+ K GK  DA +LF  +  +   P+
Sbjct: 534 FCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593

Query: 418 V 418
           V
Sbjct: 594 V 594


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 193/479 (40%), Gaps = 72/479 (15%)

Query: 209 LSHNLVVDVLERFRHARRP--AFRFFCWA-GDKPGFAHN------------------SRT 247
           L+  LV+ +L       RP     FF WA  + P F HN                  S  
Sbjct: 48  LTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLPSLFSHRKFSDA 107

Query: 248 YNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            + ++  +   R+ +  +S+L      K LL       A+ A+  + +   A  IF+ M 
Sbjct: 108 KSLLLGFIATDRRHDLHLSILRLTSPSKALLD-----TAIGAYVQSGQPHHAFQIFKKMK 162

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLF------DKLKHRFTPNLTTYTVLLGGWCR 360
           + + +  + T N LL +L R   P    + F      D +K    PN+ T+ +++ G+C 
Sbjct: 163 RLRLRPNLLTCNTLLNSLVR--YPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCL 220

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A    N M      PD V +N +L+ L K G+  DA  L   MK++G  PN  +
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNT 280

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y I+++ +CK                     +   Y  LI G  N  R++  + L  EME
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
                PD ++YN LI          EA ++ +EM   G KP   T+N+++K Y + G  +
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
                  +M   G  PD  +Y  LI G       GEA++ ++EM  K MK   +  N   
Sbjct: 401 DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTIL 460

Query: 581 ADLSRA--------------GRSYVLDELAQKMRFSGKFEVSNV---LARWAETTKNRV 622
             L R                R Y +DE++      G F+  NV   L  W E  +  +
Sbjct: 461 RTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEI 519



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 17/343 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++  L +  +      +L +M  +GLL +  T+ I +  +      K+A  + ELM
Sbjct: 245 TYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      V T N L+  L      +EA  L D++++ +  P++ +Y  L+ G      +
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA ++  EM +KG KP+ V HNIM++   K GK  DA      M+  G SP+  +Y  +
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I  +CK             GN   M   +  + EM  +    D +T N +++ +  +K  
Sbjct: 425 INGYCKA------------GN---MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKL 469

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +EA ++     + G+     +Y  ++  YF+ GN +   K+WDEM  +   P   +Y  +
Sbjct: 470 EEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCI 529

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           IGGL    ++ +A   L E+LE G+      YN       R G
Sbjct: 530 IGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 22/379 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN +++ L    + E    + +EM    LL  + ++   +N      +  +A  + E M
Sbjct: 315 TYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEM 374

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           ++   K    T N +++   +     +A     K++   F+P+  TY  L+ G+C+  N+
Sbjct: 375 SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNM 434

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA R  +EM  K  K D V  N +L  L +  K  +A KL    + +G   +  SY  +
Sbjct: 435 GEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTL 494

Query: 425 I---------------WKFCKQNAAV-----YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I               W   K+   +     Y C+I G     + +     L E+ E G 
Sbjct: 495 IVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGL 554

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN ++     +   ++A + + +MV + FKP + T N++++     G  E   K
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALK 614

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +++  + +G   D  +Y  LI  L  + R  +A+  L EM EK +      YN     L+
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 585 RAGRSYVLDELAQKMRFSG 603
            +GR    +E   KM   G
Sbjct: 675 DSGRIREAEEFMSKMLEKG 693



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 41/352 (11%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AFR     G K     +S T N+++  L R ++ E    +L    ++G    E ++   +
Sbjct: 437 AFRTMDEMGRK-NMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFT 345
             +       +A+ +++ M + +      T NC++  L +  K  +    L + L+    
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+ TTY  +L G+CR  ++ +A +  N+M++  FKPDV   NI+L GL   G    A+KL
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKL 615

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F    +KG + +  +Y  +I   CK+                R+D  ++LL EMEE+   
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEG---------------RLDDAFNLLSEMEEKELG 660

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-----------------------T 502
           PD  TYNA+I  +       EA     +M+  G  P                       +
Sbjct: 661 PDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSS 720

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              Y+  +K     G Y+   +++ E  ++G   D ++Y  L+ GLI + +S
Sbjct: 721 SVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKS 772


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 178/364 (48%), Gaps = 5/364 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N    ++    L  A +F+    ++ EM  KG +  + T+   +     A + +KA
Sbjct: 413 GVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKA 472

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             +FE M K      V T   L+++  ++ L ++A+  FD+ L+   TPN+ TYT L+  
Sbjct: 473 FLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHA 532

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + + + + +A +++  M+ +G KP+VV +  +++G  K G+   A +++  M+    S +
Sbjct: 533 YLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSD 592

Query: 418 VRSYTIMIWKFCKQ-NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  Y  +    C+  N   Y  L+ G     R++  ++LL  M   GC P+ + Y+ALI 
Sbjct: 593 IDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALID 652

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
              K  K+ + A  ++ +M   G+ P ++TY+ ++ S F+    ++  KV  +M+   C 
Sbjct: 653 GFCKTGKL-ENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCT 711

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P+   YT +I GL    ++ EAY+ + +M E G    V+ Y        + G+     EL
Sbjct: 712 PNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLEL 771

Query: 596 AQKM 599
            + M
Sbjct: 772 YRDM 775



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 186/411 (45%), Gaps = 43/411 (10%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AF   C    K GF  +  TY+ ++  L  A + E    + EEM + G++ S+ T+ I +
Sbjct: 437 AFEIICEMMSK-GFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILI 495

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFT 345
           ++F  A   ++A   F+ M +      V T   L+    +++   +A  LF+  L     
Sbjct: 496 DSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSK 555

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIM 389
           PN+ TYT L+ G C+   + +A +++  M        ID  FK        P+++ +  +
Sbjct: 556 PNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGAL 615

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           ++GL K  +  +A +L + M   G  PN   Y  +I  FCK                   
Sbjct: 616 VDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGY 675

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAV 488
             N   Y+ LI      +R+D+V  +L +M E  C P+ + Y  +I  L K+ K  +EA 
Sbjct: 676 CPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKT-EEAY 734

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           R+  +M   G  P + TY  ++  + + G  E   +++ +M  +GC P+  +Y VLI   
Sbjct: 735 RLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHC 794

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV--LDELAQ 597
            S     EA++ L+EM +      +  Y K     +R   + +  LDEL++
Sbjct: 795 CSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSE 845



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 177/402 (44%), Gaps = 39/402 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  +  TYN+++ +  RA + +T   +  EM   G   M+   +   A++  K  +   
Sbjct: 200 GYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGF-RMDGCTLGCFAYSLCKAGRCGD 258

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGW 358
           A+  L+ K +F       N ++  L  + L +EA  + D+++     PN+ TY +LL G 
Sbjct: 259 AL-SLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGC 317

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
                L    R+ + M+ +G  P+    N ++    K    S A KLF+ M   G  P  
Sbjct: 318 LGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGY 377

Query: 419 RSYTIMIWKFC-----------------------------KQNAAVYTCLITGFGNRRRM 449
             Y I I   C                             K N + +   + G G   + 
Sbjct: 378 LLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAG---KF 434

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  ++++ EM  +G  PD  TY+ +I  +      ++A  +++EM ++G  P+++TY ++
Sbjct: 435 DKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTIL 494

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + S+ + G  +  R  +DEM+R  C P+  +YT LI   +   +  +A K  E ML +G 
Sbjct: 495 IDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGS 554

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQ-KMRFSGKFEVSNV 610
           K  V+ Y        +AG+   +D+  Q   R  G  E S++
Sbjct: 555 KPNVVTYTALIDGHCKAGQ---IDKACQIYARMQGDIESSDI 593



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 17/354 (4%)

Query: 266 SMLEEMGEKGLLSMETFKIAMNA-----FA-----AAKERKKAVAIFELMNKYKFKAGVD 315
           S L E+ EK    M    + +N      FA     A K  K    I E+M+K  F     
Sbjct: 396 SDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSK-GFVPDDS 454

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + ++  L  +   ++A LLF+++K     P++ TYT+L+  +C+   + +A   ++EM
Sbjct: 455 TYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEM 514

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           +     P+VV +  ++   LK  K  DA KLFE+M  +G  PNV +YT +I   CK    
Sbjct: 515 LRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQI 574

Query: 435 VYTCLITG--FGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRIY 491
              C I     G+    DI  D+  ++++  C  P+ +TY AL+  +      +EA  + 
Sbjct: 575 DKACQIYARMQGDIESSDI--DMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELL 632

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             M  +G +P    Y+ ++  + +TG  E  ++V+ +M  RG CP+  +Y+ LI  L  +
Sbjct: 633 DTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKE 692

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            R     K L +MLE      V+ Y      L + G++     L  KM   G +
Sbjct: 693 KRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCY 746



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 166/425 (39%), Gaps = 66/425 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAF--RFFCWAGDKPGFAHNSRTYNSMMSILG--------RA 258
           LS  LVV+V+   +H   P F   FF WA  + G++H    YN+++ +L          +
Sbjct: 98  LSEPLVVEVMNLVKH---PEFCVEFFLWASRQIGYSHTPVVYNALIELLCCNAVNNDRVS 154

Query: 259 RQFETMVS--------------------------MLEEMGEKGLL----SMETFKIAMNA 288
            +F   +                            LEE+G         S  T+   +  
Sbjct: 155 HKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQV 214

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
           F  A +   A  +   M+   F+    T+ C   +L ++    +A  L +  K  F P+ 
Sbjct: 215 FLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLE--KEEFVPDT 272

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
             Y  ++ G C      EA  + + M      P+VV + I+L G L  G+     ++  +
Sbjct: 273 VFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSM 332

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           M  +G  PN   +  ++  +CK                R     Y L K+M + GC P  
Sbjct: 333 MMTEGCYPNREMFNSLVHAYCKS---------------RDYSYAYKLFKKMIKCGCQPGY 377

Query: 469 LTYNALI-KLMKIQKMP-----DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           L YN  I  +   +++P     + A + Y EM+  G        +   +     G ++  
Sbjct: 378 LLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKA 437

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            ++  EM+ +G  PDD++Y+ +IG L    +  +A+   EEM + G+   V  Y      
Sbjct: 438 FEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDS 497

Query: 583 LSRAG 587
             +AG
Sbjct: 498 FCKAG 502



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 107/261 (40%), Gaps = 26/261 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  N  TY+S+++ L + ++ + ++ +L +M E     ++  +   ++      + ++A
Sbjct: 674 GYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEA 733

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +   M +      V T   +++  G+  K+ +  +L  D       PN  TY VL+  
Sbjct: 734 YRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINH 793

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    L EA R+ +EM    +   + ++  ++EG  +  +   +I L + +      P 
Sbjct: 794 CCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNR--EFITSIGLLDELSENESVPV 851

Query: 418 VRSYTIMIWKFCKQ----------------------NAAVYTCLITGFGNRRRMDIVYDL 455
              Y I+I  F K                       N  +YT LI    +  ++D  ++L
Sbjct: 852 ESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFEL 911

Query: 456 LKEMEERGCPPDGLTYNALIK 476
              M  +   P+  T+  LIK
Sbjct: 912 YASMINKNVVPELSTFVHLIK 932


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 173/386 (44%), Gaps = 59/386 (15%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAV 299
           FAHN  TY +M+  L +AR FE M +++ ++ +  +   E  F   +  +  A   K A+
Sbjct: 131 FAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAI 190

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---------------- 343
             F  +  +  +  V + N LL  L ++K      L+F   + +                
Sbjct: 191 RTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKA 250

Query: 344 ---------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                                F PN+ TYT +LGG+    +++ A RV+ E++D+G+ PD
Sbjct: 251 LCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPD 310

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
              + I+++G  K G+  DA+K+ + M+     PN  +Y ++I  +CK+           
Sbjct: 311 PTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLD 370

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    ++A+   +I       ++++  +L K++ ++ C PD    + LI  +  + 
Sbjct: 371 DMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEG 430

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              EA +++ E    G  P+  TYN ++    + G      ++WD M+ +GC P+  +Y 
Sbjct: 431 KVWEARKLFDEF-EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYN 489

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKG 568
           +LI G      + E  + +EEML+ G
Sbjct: 490 MLIKGFCKVGNAREGIRVMEEMLDNG 515



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           EA+ LFD+ +    P+  TY  L+ G C    L EA R+W+ M++KG  P+   +N++++
Sbjct: 434 EARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIK 493

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           G  K+G   + I++ E M   G  PN  +Y I
Sbjct: 494 GFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 170/386 (44%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYNS++ +L ++ + +    +L EM  +G++     +   ++ F      + A
Sbjct: 40  GLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAA 99

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F+ M K +          ++  L R     EA  +F+K+  R   P+  TYT L+ G
Sbjct: 100 YKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDG 159

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + +A  + N+M+  G  P+VV +  + +GL K+G+   A +L   M  KG   N
Sbjct: 160 YCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLN 219

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  ++   CK                     +   +T L+  +     M   ++LL+
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG  P  +T+N L+    +  M ++  R+   M+  G  P   TYN +MK Y    
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRN 339

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N     +++  M  RG  PD N+Y +LI G        EA+   +EM EKG       YN
Sbjct: 340 NMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYN 399

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  +  +     EL ++MR  G
Sbjct: 400 SIIKGFFKKKKISEARELFEEMRREG 425



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 20/281 (7%)

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            +L K  +L+ +       PNL TY  ++   C+   + +A RV  EMI++G  PD V +
Sbjct: 24  GELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVY 83

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------------- 430
             +++G  K+G    A KLF+ M+ +   P+  +YT +I   C+                
Sbjct: 84  TTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFS 143

Query: 431 ----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +   YT LI G+     M+  + L  +M + G  P+ +TY AL   +      D 
Sbjct: 144 RGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDT 203

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  +  EM   G +  I TYN ++    ++GN     K+ +EM   G  PD  ++T L+ 
Sbjct: 204 ANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMD 263

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
                    +A++ L EML++G++  V+ +N        +G
Sbjct: 264 AYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG 304



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 17/261 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ +Y+ ++ G+C    L +  ++  EM  KG KP++  +N ++  L K GK  DA ++
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              M  +G  P+   YT +I  FCK             GN   +   Y L  EME++   
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCK------------LGN---IQAAYKLFDEMEKQRIV 112

Query: 466 PDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PD + Y A+I  L +  KM  EA +++ +M   G +P   TY  ++  Y ++G  E    
Sbjct: 113 PDFIAYTAVICGLCRCGKMM-EADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFS 171

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + ++M++ G  P+  +YT L  GL    +   A + L EM  KG++  +  YN     L 
Sbjct: 172 LHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLC 231

Query: 585 RAGRSYVLDELAQKMRFSGKF 605
           ++G      +L ++M  +G +
Sbjct: 232 KSGNIRQAVKLMEEMEVAGMY 252



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 140/308 (45%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY +++    ++ + E   S+  +M + GL  ++ T+    +      +   A
Sbjct: 145 GVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTA 204

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             +   M     +  + T N L+  L +S   ++A  L ++++     P+  T+T L+  
Sbjct: 205 NELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDA 264

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   +++A  +  EM+D+G +P V+  N+++ G    G   D  +L   M  KG  PN
Sbjct: 265 YCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPN 324

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  ++ ++C +N                M    ++ K M  RG  PD  TYN LIK 
Sbjct: 325 TTTYNSLMKQYCIRN---------------NMRCTTEIYKGMCARGVMPDSNTYNILIKG 369

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               +   EA  ++KEM   GF  T  +YN I+K +F+       R++++EM R G   D
Sbjct: 370 HCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAAD 429

Query: 538 DNSYTVLI 545
              Y + +
Sbjct: 430 AEIYNLFV 437



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 15/195 (7%)

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           MK +G +P+V SY+ +I  +C              G    +  V  L++EM+ +G  P+ 
Sbjct: 1   MKFRGDAPDVVSYSTVINGYC-------------LGGE--LQKVLKLIQEMQMKGLKPNL 45

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
            TYN++I L+      D+A R+ +EM+  G  P    Y  ++  + + GN +   K++DE
Sbjct: 46  YTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDE 105

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M ++   PD  +YT +I GL    +  EA K   +M  +G++   + Y        ++G 
Sbjct: 106 MEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGE 165

Query: 589 SYVLDELAQKMRFSG 603
                 L  +M  SG
Sbjct: 166 MEKAFSLHNQMVQSG 180



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 22/284 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   N  TY ++   L +  Q +T   +L EM  KGL L++ T+   +N    +   +
Sbjct: 178 QSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIR 237

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +AV + E M          T   L++   ++ ++ K  +LL + L     P + T+ VL+
Sbjct: 238 QAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C    L +  R+   M++KG  P+   +N +++            ++++ M A+G  
Sbjct: 298 NGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM 357

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y I+I   CK                      A+ Y  +I GF  ++++    +L
Sbjct: 358 PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEAREL 417

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
            +EM   G   D   YN  + +   +   + A+ +  E + + F
Sbjct: 418 FEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIENCF 461


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 152/328 (46%), Gaps = 21/328 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           +F + + A    +   +A+ +F  M + K      T   L++ L + +   EA LL D++
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM 248

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +    +P+   Y VL+ G C+  +L    ++ + M  KG  P+ V +N ++ GL   GK 
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKL 308

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A+ L E M +    PN  +Y  +I    KQ                    N  +Y+ L
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVL 368

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I+G     + +    L ++M E+GC P+ + Y+ L+  +  +  P+EA  I   M+ SG 
Sbjct: 369 ISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGC 428

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P  +TY+ +MK +F+TG  E   +VW EM + GC  +   Y+VLI GL    R  EA  
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAG 587
              +ML  G+K   + Y+     L   G
Sbjct: 489 VWSKMLTIGIKPDTVAYSSIIKGLCGIG 516



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 191/438 (43%), Gaps = 38/438 (8%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           LS NLV+  L + R   R A   F    ++     +  TY ++M  L +  + +  V +L
Sbjct: 188 LSFNLVIKALCKLRFVDR-AIEVFRGMPERKCLP-DGYTYCTLMDGLCKEERIDEAVLLL 245

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
           +EM  +G   S   + + ++      +  +   + + M          T N L+  L  +
Sbjct: 246 DEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLK 305

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            KL K   LL   +  +  PN  TY  L+ G  + +   +A R+ + M ++G+  +   +
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIY 365

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           ++++ GL K GK  +A+ L+  M  KG  PN+  Y++++   C++               
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA 425

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                NA  Y+ L+ GF      +    + KEM++ GC  +   Y+ LI  +       E
Sbjct: 426 SGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKE 485

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI---RRGCCPDDNSYTV 543
           A+ ++ +M+  G KP    Y+ I+K     G+ +   K++ EM+        PD  +Y +
Sbjct: 486 AMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNI 545

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR------AGRSYVLDELA- 596
           L+ GL  Q     A   L  ML++G    V+  N F   LS        GRS+ L+EL  
Sbjct: 546 LLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSF-LEELVV 604

Query: 597 ---QKMRFSGKFEVSNVL 611
              ++ R SG   +  V+
Sbjct: 605 RLLKRQRVSGACTIVEVM 622



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 170/370 (45%), Gaps = 22/370 (5%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAV 299
           F     T +SM+     +  F+++  +L  +  +  + +E +F +   A+  A    KAV
Sbjct: 73  FKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAV 132

Query: 300 AIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-----KLKHRFTPNLTTYTV 353
            +F  ++++++ K  V + N +L  +    L       +D      +    +PN  ++ +
Sbjct: 133 DLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNL 192

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++   C+++ +  A  V+  M ++   PD   +  +++GL K  +  +A+ L + M+++G
Sbjct: 193 VIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            SP+   Y ++I   CK+            G+  R   V  L+  M  +GC P+ +TYN 
Sbjct: 253 CSPSPVIYNVLIDGLCKK------------GDLTR---VTKLVDNMFLKGCVPNEVTYNT 297

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  + ++   D+AV + + MV S   P   TY  ++    +        ++   M  RG
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
              + + Y+VLI GL  + ++ EA     +M EKG K  ++ Y+     L R G+     
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417

Query: 594 ELAQKMRFSG 603
           E+  +M  SG
Sbjct: 418 EILNRMIASG 427



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 29/228 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N+ TY+S+M    +    E  V + +EM + G    +  + + ++        K+A
Sbjct: 427 GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEA 486

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKL---KHRFTPNLTTYTVL 354
           + ++  M     K      + +++ L G   +    +L  + L   + +  P++ TY +L
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNIL 546

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG---------------------L 393
           L G C  K++  A  + N M+D+G  PDV+  N  L                       L
Sbjct: 547 LDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRL 606

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAVYTC 438
           LK  + S A  + EVM  K  +P   ++ +++ + CK    NAA+  C
Sbjct: 607 LKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKINAAIDKC 654


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 171/381 (44%), Gaps = 59/381 (15%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELM 305
           +N ++S L + +++  +VS+   +  K  +  S+ TF I +NAFA   +   A +     
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFS----- 126

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                                        LL + LK  F  ++   T L+ G C    ++
Sbjct: 127 -----------------------------LLGNILKMGFQIDVRILTTLMKGLCLKGRVL 157

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  + +E +D+GF+ D V +  ++ GL KIGK  DAI++F  MK     PN+  Y  +I
Sbjct: 158 EAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVI 217

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-C 464
              CKQ                    +   Y  +I GF +  R      LL EM  RG  
Sbjct: 218 DGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKV 277

Query: 465 PPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            PD  T+N LI  L K+ ++  EA  +   M++ G+KP I +YN +M  Y  +G+    +
Sbjct: 278 YPDVYTFNILIDGLCKLGRV-SEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAK 336

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +V+D+M+ R   P+  SY  LI G        EA   L EM  K +    + YN     L
Sbjct: 337 QVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGL 396

Query: 584 SRAGRSYVLDELAQKMRFSGK 604
           S++GRS    +L + MR SG+
Sbjct: 397 SKSGRSLYEWDLVEAMRASGQ 417



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 167/386 (43%), Gaps = 58/386 (15%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERK 296
           K GF  + R   ++M  L    +    VS+L E  ++G    E  +   +N      + +
Sbjct: 133 KMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTR 192

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL---------------FDKLK 341
            A+ +F  M K +    +   N +++ L +  L  EA  L               ++ + 
Sbjct: 193 DAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMI 252

Query: 342 HRFT----------------------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           H F                       P++ T+ +L+ G C++  + EA  V   MI +G+
Sbjct: 253 HGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGW 312

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------- 430
           KPD+V++N ++ G    G   +A ++F+ M  +   PNV SY  +I  +CK         
Sbjct: 313 KPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMV 372

Query: 431 -----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       +   Y CL+ G     R    +DL++ M   G P D +TYN L+    
Sbjct: 373 LLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYF 432

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
             +  D+A+ +++ ++  G  P I TYN+++    ++G  +  ++++  +  +GC P+  
Sbjct: 433 KHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIR 492

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEML 565
           +Y ++I GL  +    EA   L +M+
Sbjct: 493 TYNIMIHGLCKEGFLDEAEALLYKMV 518



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 140/304 (46%), Gaps = 23/304 (7%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAF 289
            C    + G   +  +YNSM+       +F+  V +L+EM  +G +   + TF I ++  
Sbjct: 232 LCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGL 291

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNL 348
                  +A  +  +M K  +K  + + N L+     S    EA+ +FDK+  R   PN+
Sbjct: 292 CKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNV 351

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            +Y  L+ G+C+V+ + EA  +  EM +K   PD V +N +L+GL K G+      L E 
Sbjct: 352 ISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEA 411

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
           M+A G   ++ +Y +++  + K                     N   Y  L+ G     R
Sbjct: 412 MRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGR 471

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +    ++ + +  +GC P+  TYN +I  +  +   DEA  +  +MV + + P   T++ 
Sbjct: 472 LKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDT 531

Query: 509 IMKS 512
           I+++
Sbjct: 532 IVRA 535



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 123/252 (48%), Gaps = 29/252 (11%)

Query: 238 KPGFAHNSRTYNSMMS------ILGRARQ-FETMVSMLEEMGEKGLLSMETFKIAMNAFA 290
           K G+  +  +YN++M+       +G A+Q F+ MV          L ++ ++   +N + 
Sbjct: 309 KRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVE------RTALPNVISYCTLINGYC 362

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLT 349
             +   +A+ +   M+         T NCLL+ L +S        L + ++    P +L 
Sbjct: 363 KVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLI 422

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY VLL  + + +   +A  ++  +I+ G  P++  +NI+L+GL K G+   A ++F+++
Sbjct: 423 TYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLL 482

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
            AKG  PN+R+Y IMI   CK+          GF     +D    LL +M      P+ +
Sbjct: 483 SAKGCQPNIRTYNIMIHGLCKE----------GF-----LDEAEALLYKMVNNNYLPNYI 527

Query: 470 TYNALIKLMKIQ 481
           T++ +++ + ++
Sbjct: 528 TFDTIVRAILVK 539


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 182/403 (45%), Gaps = 18/403 (4%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +EA LD     +S + VV + +  + A      F C +  + GF H+  T N+++ +  R
Sbjct: 72  IEAALDRLRREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFAR 131

Query: 258 ARQFETMVSMLE-EMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVD 315
            ++     ++L+ E+       +ET+ + +  +  A+E ++A A+  E+   +     + 
Sbjct: 132 TKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLK 191

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           T N +L  L +S     A   F+ ++     +  T+++L+ G  +   +++A  +  E  
Sbjct: 192 THNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETT 251

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
             G   D+  +  ++  L K  K  +A+ L E + A G +P + +Y  ++   CK     
Sbjct: 252 TNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMG--- 308

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                       R++   DLL+++ + GC PD +TY +LI  +  +K   EA +++KEM 
Sbjct: 309 ------------RLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 356

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G       Y  +++   QTG       V+  M   GC PD  + + +I GL    R G
Sbjct: 357 SRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG 416

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQ 597
            A +  + M  +G+    + Y+     L +A +    L+ LAQ
Sbjct: 417 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 459



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 169/365 (46%), Gaps = 25/365 (6%)

Query: 224 ARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
           AR P  AF       +  G A + +T+N ++  L ++ +    +   E +     +S  T
Sbjct: 167 AREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAAT 226

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F I +N    A    +A ++ +          + T   ++  L ++K  +EA  L +K+ 
Sbjct: 227 FSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKIT 286

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
            +  TP + TY  LL G C++  L EA  +  +++D G  PDVV +  +++GL K  +  
Sbjct: 287 ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSF 346

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLI 440
           +A KLF+ M ++G + +   YT +I                       C  +    + +I
Sbjct: 347 EAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 406

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF 499
            G     R+     + K ME RG  P+ + Y+ALI  L K +KM D A+ +  +M ++  
Sbjct: 407 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM-DCALEMLAQMKKAFC 465

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P   TYN+++    ++G+ E  R  +DEM+  GC PD  +Y +LI GL     +  A  
Sbjct: 466 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACG 525

Query: 560 YLEEM 564
            L++M
Sbjct: 526 VLDDM 530



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 25/345 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A ++  Y +++  L +  +     S+ + M   G +  + T    ++  + A     A
Sbjct: 359 GLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAA 418

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           V IF+ M            + L+  L +++    A  +  ++K  F TP+  TY +L+ G
Sbjct: 419 VRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 478

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++  A   ++EM++ G KPDV  +NI++ GL K G    A  + + M +      
Sbjct: 479 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSS----- 533

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                    +F      VY+ L+ G     +++    L  EME  G          +  L
Sbjct: 534 ---------RF------VYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHL 578

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
            K  ++ DEAV ++  + + G  P  + YN I+ +  ++G    G+ V+ EM R    PD
Sbjct: 579 CKANRV-DEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEMTRWW-KPD 635

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +Y  L+ G+I  +R   A+ Y  EM  +G   PV   +K A D
Sbjct: 636 RVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKLADD 680



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 129/319 (40%), Gaps = 55/319 (17%)

Query: 289 FAAAKERKKAVAIFELMN--KYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFT 345
           F   K+   A  +F+ ++  ++ F+  V T N LL+   R+K  +EA  LL ++L   F 
Sbjct: 92  FQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFR 151

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           P++ T+ VL+ G+C  +   EA  V  EM  D G  P +  HN++L GL K GK   A+ 
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            FE ++   P                 +AA ++ LI G      M   + L +E    GC
Sbjct: 212 HFEAVRRSMPV----------------SAATFSILINGLVKAGMMIQAHSLAQETTTNGC 255

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D                                   IHTY  I+    +    +    
Sbjct: 256 TID-----------------------------------IHTYTAIVNWLAKNKKIQEAVA 280

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + +++   GC P   +Y  L+ GL    R  EA   L ++++ G    V+ Y      L 
Sbjct: 281 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 340

Query: 585 RAGRSYVLDELAQKMRFSG 603
           +  RS+   +L ++M   G
Sbjct: 341 KEKRSFEAYKLFKEMASRG 359


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 175/352 (49%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + +  TYNS++   G+  + E +  ++ EM   G    + T+   +N F      ++A
Sbjct: 224 GCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERA 283

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            + F  M +    A V T +  ++   ++ + +EA  LF +++ +   PN  TYT L+ G
Sbjct: 284 YSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDG 343

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   L +A  + NEM+ +G   +VV + ++++GL K GK ++A  +F +M+  G   N
Sbjct: 344 TCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRAN 403

Query: 418 VRSYTIMI-WKFCKQNA-------------------AVYTCLITGFGNRRRMDIVYDLLK 457
              YT +I   F  +N+                   ++Y  LI G  N +++D    LL 
Sbjct: 404 ELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLN 463

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M+E G  P+ + Y  ++      +   EA+ + ++M+ SGF+P I TY  ++    + G
Sbjct: 464 KMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAG 523

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + +     +++M+  G  P+  +YT L+ GL    R  +A   L+EM++KGM
Sbjct: 524 SIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGM 575



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 172/420 (40%), Gaps = 48/420 (11%)

Query: 187 VIDELFSL--DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHN 244
           V+D L SL  DR +   LD+          V  L R R  R P                N
Sbjct: 130 VVDTLLSLLADRGL---LDD---------AVLALARVRELRVPP---------------N 162

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304
           +RT N ++  L R R  E    + E++    +    TF I ++      +  +A A+   
Sbjct: 163 TRTCNHILLCLARERSSELAWRLFEQLPAPNVF---TFNIMIDFLCKEGDLAEARALLAR 219

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKN 363
           M        V T N L++  G+    +E + L  +++     P++ TY  L+  +C+   
Sbjct: 220 MKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGR 279

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           +  A   + EM  +G   +VV  +  ++   K G   +A+KLF  M+ KG  PN      
Sbjct: 280 MERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPN------ 333

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                       YTCL+ G     R+D    L  EM ++G P + +TY  L+  +  +  
Sbjct: 334 ---------EVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGK 384

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA  +++ M R+G +     Y  ++  +F   N E    +  EM  +G   D + Y  
Sbjct: 385 VAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGA 444

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           LI GL +  +  EA   L +M E G+K   + Y        +A +      L QKM  SG
Sbjct: 445 LIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSG 504



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 146/342 (42%), Gaps = 23/342 (6%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKI 284
           R A + F     K G   N  TY  ++    +A + +  + +  EM ++G+ L++ T+ +
Sbjct: 316 REAMKLFAQMRMK-GMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTV 374

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR- 343
            ++      +  +A  +F LM +   +A       L+      K  + A  L  ++K + 
Sbjct: 375 LVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKG 434

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
              +++ Y  L+ G C ++ L EA  + N+M + G KP+ V +  +++   K  K S+AI
Sbjct: 435 MELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAI 494

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
            L + M   G  PN+ +Y  ++   CK                     N   YT L+ G 
Sbjct: 495 ALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGL 554

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               R+D    LL EM ++G   D +   +L+     Q    +A  +  +M+ SG +  +
Sbjct: 555 CKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDL 614

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           + Y   +  +      +  R+V  EMI  G  PD   Y  LI
Sbjct: 615 YGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLI 656



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 158/355 (44%), Gaps = 39/355 (10%)

Query: 254 ILGRARQF---ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           IL RAR F    +++S L   G    L+     +   A  A   R+ A+           
Sbjct: 79  ILARARLFPHSRSLLSRLLAPGHHPHLAASLVDLLHRAALALGPRRSAL----------- 127

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGR 369
            + VDT+  LL + G   L  +A L   +++  R  PN  T   +L    R ++   A R
Sbjct: 128 PSVVDTLLSLLADRG---LLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWR 184

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           ++ ++      P+V   NIM++ L K G  ++A  L   MKA G SP+V           
Sbjct: 185 LFEQLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDV----------- 229

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAV 488
                 Y  LI G+G    ++ V  L+ EM   GC PD +TYNAL+    K  +M + A 
Sbjct: 230 ----VTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRM-ERAY 284

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
             + EM R G    + T++  + ++ + G      K++ +M  +G  P++ +YT L+ G 
Sbjct: 285 SYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGT 344

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               R  +A     EM+++G+   V+ Y      L + G+    +++ + M  +G
Sbjct: 345 CKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAG 399



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 19/258 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   +   Y +++  L   ++ +   S+L +M E GL      +   M+A   A++  +A
Sbjct: 434 GMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEA 493

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +A+ + M    F+  + T   L++ L ++    EA   F+K+      PN+  YT L+ G
Sbjct: 494 IALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDG 553

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   L +A  + +EMIDKG   D V    +++G LK G   DA  L   M   G   +
Sbjct: 554 LCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLD 613

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           +  YT  +W               GF N   +    ++L EM E G  PD + YN LI K
Sbjct: 614 LYGYTCFVW---------------GFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINK 658

Query: 477 LMKIQKMPDEAVRIYKEM 494
             K+  M +EA  +  EM
Sbjct: 659 CQKLGNM-EEAAILQNEM 675



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 5/214 (2%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR 259
           +DECG+  ++ +  ++++    AR+   A        D  GF  N  TY +++  L +A 
Sbjct: 465 MDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDS-GFRPNIVTYCALVDGLCKAG 523

Query: 260 QFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTI 317
             +  +S   +M + GL  +++ +   ++         KAV +  E+++K      V   
Sbjct: 524 SIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCT 583

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           + +  +L +  L     L    +      +L  YT  + G+C +  + EA  V +EMI+ 
Sbjct: 584 SLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIEN 643

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           G  PD V +N ++    K+G   +A  L   M++
Sbjct: 644 GITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 153/328 (46%), Gaps = 21/328 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           +F + + A        +A+ +F  M + K      T   L++ L + +   EA LL D++
Sbjct: 189 SFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM 248

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +    +P+   Y VL+ G C+  +L    ++ + M  KG  P+ V +N ++ GL   GK 
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKL 308

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A+ L E M +    PN  +Y  +I    KQ                    N  +Y+ L
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVL 368

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I+G     + +    L K+M E+GC P+ + Y+A+I  +  +  P+EA  I   M+ SG 
Sbjct: 369 ISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGC 428

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P ++TY+ +MK +F+TG  E   +VW EM   GC  ++  Y+VLI GL    R  EA  
Sbjct: 429 LPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMM 488

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAG 587
              +ML  G+K   + Y+     L   G
Sbjct: 489 VWSKMLTIGIKPDTVAYSSMIKGLCGIG 516



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 190/438 (43%), Gaps = 38/438 (8%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           LS NLV+  L +     R A   F    +K     +  TY ++M  L +  + +  V +L
Sbjct: 188 LSFNLVIKALCKLGFVDR-AIEVFRGMPEKKCLP-DGYTYCTLMDGLCKEERIDEAVLLL 245

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
           +EM  +G   S   + + ++      +  +   + + M          T N L+  L  +
Sbjct: 246 DEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLK 305

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            KL K   LL   +  +  PN  TY  L+ G  + +  M+  R+   M ++G++ +   +
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIY 365

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           ++++ GL K GK  +A+ L++ M  KG  PN+  Y+ +I   C++               
Sbjct: 366 SVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMIS 425

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N   Y+ L+ GF      +    + +EM+E GC  +   Y+ LI  +       E
Sbjct: 426 SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKE 485

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI---RRGCCPDDNSYTV 543
           A+ ++ +M+  G KP    Y+ ++K     G+ +   K++ EM+        PD  +Y +
Sbjct: 486 AMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNI 545

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS------RAGRSYVLDELAQ 597
           L+ GL  Q     A   L  ML++G    V+  N F   LS        GRS+ L+EL  
Sbjct: 546 LLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSF-LEELVA 604

Query: 598 KM----RFSGKFEVSNVL 611
           ++    R SG  ++  V+
Sbjct: 605 RLLKRQRVSGACKIVEVM 622



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 171/390 (43%), Gaps = 27/390 (6%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAV 299
           F     T +SM+        F ++  +L  +  +  + +E +F +   A+  A   +KAV
Sbjct: 73  FKLGDSTLSSMIENYANLGDFASVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPEKAV 132

Query: 300 AIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-----KLKHRFTPNLTTYTV 353
            +F  ++++++ K  V + N +L  +    L       +D      +    +PN  ++ +
Sbjct: 133 DLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNL 192

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++   C++  +  A  V+  M +K   PD   +  +++GL K  +  +A+ L + M+++G
Sbjct: 193 VIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            SP+   Y ++I   CK+                    N   Y  LI G   + ++D   
Sbjct: 253 CSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAV 312

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            LL+ M    C P+ +TY  LI  +  Q+   +  R+   M   G++   H Y++++   
Sbjct: 313 SLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGL 372

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
           F+ G  E    +W +M  +GC P+   Y+ +I GL  + +  EA + L  M+  G    V
Sbjct: 373 FKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNV 432

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             Y+       + G S    ++ ++M  +G
Sbjct: 433 YTYSSLMKGFFKTGLSEEAIQVWREMDETG 462



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 147/354 (41%), Gaps = 41/354 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+++  L    + +  VS+LE M   K + +  T+   +N     +     
Sbjct: 287 GCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDG 346

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
             +   M +  ++      + L+  L +    +EA  L+ K+  +   PN+  Y+ ++ G
Sbjct: 347 ARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDG 406

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR     EA  + N MI  G  P+V  ++ +++G  K G   +AI+++  M   G S N
Sbjct: 407 LCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRN 466

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
              Y+++I   C                    K +   Y+ +I G      MD    L  
Sbjct: 467 EFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYH 526

Query: 458 EM---EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           EM   EE    PD +TYN L+  + +QK    AV +   M+  G  P + T N  + +  
Sbjct: 527 EMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLS 586

Query: 515 Q-TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           + + + E GR   +E++ R               L+ + R   A K +E ML K
Sbjct: 587 EKSDSCEEGRSFLEELVAR---------------LLKRQRVSGACKIVEVMLGK 625



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 29/228 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N  TY+S+M    +    E  + +  EM E G    E  + + ++        K+A
Sbjct: 427 GCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEA 486

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKL---KHRFTPNLTTYTVL 354
           + ++  M     K      + +++ L G   +    +L  + L   + +  P++ TY +L
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNIL 546

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML-----------EG----------L 393
           L G C  K++  A  + N M+D+G  PDV+  N  L           EG          L
Sbjct: 547 LDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARL 606

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---NAAVYTC 438
           LK  + S A K+ EVM  K  +P   ++ +++ + CK    NAA+  C
Sbjct: 607 LKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEICKPKKINAAINKC 654



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 5/175 (2%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           +  +   +G     +   DL   M +E  C     ++N+++ ++  + +    +  Y  +
Sbjct: 115 FIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYV 174

Query: 495 VRSG----FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           V S       P   ++N+++K+  + G  +   +V+  M  + C PD  +Y  L+ GL  
Sbjct: 175 VNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCK 234

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           ++R  EA   L+EM  +G     + YN     L + G    + +L   M   G F
Sbjct: 235 EERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCF 289


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 189/445 (42%), Gaps = 42/445 (9%)

Query: 197 NMEAVLDE--CGINLSHNLVVDVLERFR-----------HARRPAFRFFCWAGDKPGFAH 243
           N E   DE  C I +  N    V+ R +           H     F      G KP    
Sbjct: 21  NPEETCDESRCLICMGSNSCQTVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTII- 79

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIF 302
              TY ++++ L R ++F ++ S+L ++ E G+      F   +NAF+ + +  +A+ IF
Sbjct: 80  ---TYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIF 136

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCR 360
             M +   K    T N L++  G    P EA  L + +       PN  TY +L+  WC 
Sbjct: 137 RKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCT 196

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA--KGPSPNV 418
              L EA  V ++M++ G +PD+V +N +     + G+  +A +L   M+       PN 
Sbjct: 197 KNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNE 256

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
           R+  I+I  +CK+                    N  V+  LI G+ +    D V + L  
Sbjct: 257 RTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTL 316

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           MEE G  PD +TY+ ++       + D    I+ +MV++  +P I  Y+++ K Y + G 
Sbjct: 317 MEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQ 376

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +    + + M + G   +   +T +I G  +  +   A +  E+M E G    +  Y  
Sbjct: 377 PDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYET 436

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
                  A + +  +EL   M  SG
Sbjct: 437 LIWGYGEAKQPWKAEELLVTMEESG 461



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 135/347 (38%), Gaps = 64/347 (18%)

Query: 223 HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SME 280
           H     FR     G KP     + T+N+++   G   +    + +LE M + G +  +  
Sbjct: 130 HEAMKIFRKMKECGCKP----TTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNER 185

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+ I + A+    E ++A  +   M     +  + T N L     ++     A+ L  K+
Sbjct: 186 TYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKM 245

Query: 341 KH---RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI- 396
           +    +  PN  T  +++ G+C+  N+ EA R   +M + G  P+ V  N +++G L I 
Sbjct: 246 QQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDIT 305

Query: 397 ---------------GKRSDAIKLFEVMKAKGPS-------------------PNVRSYT 422
                          G + D +    +M A   S                   P++++Y+
Sbjct: 306 DTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYS 365

Query: 423 IMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+   + +                     N  ++T +I+G+    +MD    L ++M E 
Sbjct: 366 ILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEM 425

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           G P +  TY  LI      K P +A  +   M  SG  P + T  ++
Sbjct: 426 GTPLNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPEMSTIELV 472


>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
 gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
          Length = 520

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 183/396 (46%), Gaps = 38/396 (9%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
             D  G    +  ++  +   G+AR+F+   +++  M  +G+L+     I M  +AAA E
Sbjct: 126 GADGAGLPPPADAWHLAVWAAGKARRFDLAWAVVRRMRNRGVLTGRAMVILMERYAAANE 185

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             KAV  F++M K+K ++       LL  L +SK  ++A+ L    K  F  +   + ++
Sbjct: 186 VNKAVKTFDVMEKFKVESDQSVFYSLLRALCKSKNIEDAEELLLLRKKFFPLSAEGFNII 245

Query: 355 LGGWCRV-KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L GWC V  +L EA RVW EM +    PD +++ +M+    K+G   D +++++ MK +G
Sbjct: 246 LDGWCNVITDLAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGSLFDTLRVYDEMKKRG 305

Query: 414 PSPNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVY 453
             P +  Y  +++   ++N                       Y  +I       ++D   
Sbjct: 306 WIPGIGVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNSMIVPLCESCKLDEAR 365

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            +++ M  +G  P   TY+A +K    Q+  DE++++ ++M   G  P   T+ M+   +
Sbjct: 366 VVMESMILKGIVPTISTYHAFLK----QEGIDESLKLLQKMKEDGCGPKSDTFLMLFDKF 421

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
           F         +VW+EM +    P  + Y  ++ GL+       A +Y +EM EKG     
Sbjct: 422 FLLNESGNALRVWNEMRKYKISPVRSHYMTVVEGLVKHGCIPRALEYYDEMKEKG----- 476

Query: 574 LDYNKFAAD--LSRAGRSYVLDELAQKMRFSGKFEV 607
                FA+D  L +  ++++L+      R +GK+ +
Sbjct: 477 -----FASDTQLDKEFKTFLLNN-RDHWRGAGKYNI 506


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 188/421 (44%), Gaps = 31/421 (7%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA--GDKPGFAHNSRTYNSMMSILG 256
           EA L +   NL  N V  VL+  +      F FF W     +    HN+ T N ++  L 
Sbjct: 22  EAALAKYSRNLVPNTVGRVLQVIKDVDVSLF-FFRWVTRSHRGESIHNNFTCNCLLRTLV 80

Query: 257 RARQFETMVSML--EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           +AR+      +   E +G+    +  T+   +  F  A + ++A  +   M +      V
Sbjct: 81  KARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDV 140

Query: 315 DTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T + +++ L  +  L +  Q   + ++    P+   + +L+ G C+   L EA ++  E
Sbjct: 141 VTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQLSEARQMIEE 198

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-- 431
           M ++G  PDVV +N +++GL K  +  +A +L E M  +   PN+ +Y  +I+ +CK   
Sbjct: 199 MSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258

Query: 432 ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                             +   +  LI+GF  + ++D   ++L  M++  C P+ +TYN 
Sbjct: 259 TGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNV 318

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  +      +EA  +  EM   G  P I TYN ++  + +    E   ++ + M+ RG
Sbjct: 319 LISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERG 378

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             PD  SY  L   L+  +R  EA+  L+ M + G    +  +N     L  + R   LD
Sbjct: 379 VIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRR---LD 435

Query: 594 E 594
           E
Sbjct: 436 E 436



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 205/492 (41%), Gaps = 67/492 (13%)

Query: 160 GNNSESEITSVSYKSTADPREIERVCKVIDEL-FSLDRNMEAVLDECGINLSHNLVVDVL 218
           G+  E+E     Y     P  + RV +VI ++  SL           G ++ +N   + L
Sbjct: 16  GDRPEAEAALAKYSRNLVPNTVGRVLQVIKDVDVSLFFFRWVTRSHRGESIHNNFTCNCL 75

Query: 219 ER-FRHARR--PAFRFFCWAGDKPGFAH---NSRTYNSMMSILGRARQFETMVSMLEEMG 272
            R    ARR   A++ F    D+    H   N  TYN+++    +A   E    +L EM 
Sbjct: 76  LRTLVKARRHHQAYQIF---RDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMK 132

Query: 273 EKGLL----------------------------SMET------FKIAMNAFAAAKERKKA 298
           E+G                              S+E       F I ++    A +  +A
Sbjct: 133 ERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEA 192

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
             + E M++      V T N L++ L +S   +EA QLL   +K +  PNL TY  L+ G
Sbjct: 193 RQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYG 252

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+      A ++   MI  G  PDVV  N ++ G  +  K   A ++  +MK    +PN
Sbjct: 253 YCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPN 312

Query: 418 VRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLK 457
           + +Y ++I   C    A                     Y  LI  F    +++  + +  
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 458 EMEERGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            M ERG  PDG++Y  L + L+K ++  DEA  +   M  +G  P + T+N +M+    +
Sbjct: 373 LMVERGVIPDGISYCTLAVALLKSERF-DEAFALLDNMFDAGAIPNLFTFNSLMEGLCCS 431

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
              +  R +   M R GC P  ++Y VL+ GL    R  +A + L  M+ +G++  V   
Sbjct: 432 RRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSS 491

Query: 577 NKFAADLSRAGR 588
                 L+R G+
Sbjct: 492 GTIVHTLAREGK 503



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 151/292 (51%), Gaps = 23/292 (7%)

Query: 316 TINCLLENLGRSKLPKEAQLLF--DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           T NCLL  L +++   +A  +F  + L      N  TY  L+GG+C+  ++  A ++  E
Sbjct: 71  TCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAE 130

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M ++G  PDVV H+ +++ L   G  S A++ F   ++   +P+   + I++   CK N 
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKANQ 188

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYK 492
                        R+M      ++EM ERG  PD +TYN+LI  L K  +M +EA ++ +
Sbjct: 189 ---------LSEARQM------IEEMSERGIVPDVVTYNSLIDGLCKSYRM-EEARQLLE 232

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            MV+   +P + TYN ++  Y +TG   +  ++ + MI+ G  PD  ++  LI G   + 
Sbjct: 233 TMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKS 292

Query: 553 RSGEAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +  +A + L  +++KG+ AP ++ YN   + L  AGR+    EL  +M   G
Sbjct: 293 KIDKACEVL-HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRG 343



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 22/360 (6%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVA 300
           A +S  +N ++  L +A Q      M+EEM E+G++  + T+   ++    +   ++A  
Sbjct: 170 APDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQ 229

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWC 359
           + E M K K +  + T N L+    ++     A  L +++    T P++ T+  L+ G+C
Sbjct: 230 LLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFC 289

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +   + +A  V + M      P++V +N+++ GL   G+ ++A +L   M  +G  P++ 
Sbjct: 290 QKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDII 349

Query: 420 SYTIMIWKFCK----------QNAAV----------YTCLITGFGNRRRMDIVYDLLKEM 459
           +Y  +I  FC+          QN  V          Y  L        R D  + LL  M
Sbjct: 350 TYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNM 409

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            + G  P+  T+N+L++ +   +  DEA  +   M R G  P   TY +++    + G  
Sbjct: 410 FDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +  ++V   M+  G  P  +S   ++  L  + +   A  Y ++++    KA    Y K 
Sbjct: 470 DDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKL 529



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 21/306 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVS--MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
           N  TYN++  I G  +   T ++  ++E M + G    + TF   ++ F    +  KA  
Sbjct: 242 NLVTYNTL--IYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACE 299

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +  LM K      + T N L+  L  +    EA  L  ++  R   P++ TY  L+G +C
Sbjct: 300 VLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFC 359

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R   + +A ++ N M+++G  PD +++  +   LLK  +  +A  L + M   G  PN+ 
Sbjct: 360 RNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLF 419

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
           ++  ++   C                 RR+D    LL  M   GC P   TY  L+  + 
Sbjct: 420 TFNSLMEGLCCS---------------RRLDEARHLLAVMRRVGCDPAASTYEVLVTGLC 464

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                D+A  +   MV  G +P + +   I+ +  + G  ++    +D+++       D 
Sbjct: 465 KAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDP 524

Query: 540 SYTVLI 545
           SY  L+
Sbjct: 525 SYQKLL 530


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 166/349 (47%), Gaps = 21/349 (6%)

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQ 334
           L S+  F   ++A A  K+    +++ E M + +   G+ T N L+    R S++     
Sbjct: 82  LPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALA 141

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LL   +K  + P++ T + LL G+C  K + +A  + ++M++ G++PD +    ++ GL 
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
              K S+A+ L + M  +G  PN+ +Y +++   CK+                    +  
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 261

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  +I      R +D   +L KEME +G  P+ +TY++LI  +       +A ++  +M
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +     P + T+N ++ ++ + G +    K++D+MI+R   PD  +Y  L+ G    DR 
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +A +  E M+ K     V+ YN       ++ R     EL ++M   G
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 430



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 175/405 (43%), Gaps = 57/405 (14%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
             H   TYN +++   R  Q    +++L +M + G   S+ T    +N +   K    AV
Sbjct: 116 IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 175

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+ + M +  ++    T   L+  L       EA  L D++  R   PNL TY V++ G 
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235

Query: 359 CR---------VKNLMEAGRV------WNEMID--------------------KGFKPDV 383
           C+         + N MEA ++      +N +ID                    KG +P+V
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV-------- 435
           V ++ ++  L   G+ SDA +L   M  K  +PN+ ++  +I  F K+   V        
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355

Query: 436 ------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                       Y  L+ GF    R+D    + + M  + C PD +TYN LIK     K 
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            ++   +++EM   G      TY  +++  F  G+ +  +KV+ +M+  G  PD  +Y++
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L+ GL +  +  +A +  + M +  +K  +  Y      + +AG+
Sbjct: 476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 169/383 (44%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TY  +++ L +    +  +++L +M   K    +  F   +++    +    A
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 279

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F+ M     +  V T + L+  L    +    +QLL D ++ +  PNL T+  L+  
Sbjct: 280 LNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDA 339

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +    +EA +++++MI +   PD+  +N ++ G     +   A ++FE M +K   P+
Sbjct: 340 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I  FCK                     +   YT LI G  +    D    + K
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G PPD +TY+ L+  +      ++A+ ++  M +S  K  I+ Y  +++   + G
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 519

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             + G  ++  +  +G  P+  +Y  +I GL S+    EAY  L++M E G       YN
Sbjct: 520 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYN 579

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                  R G      EL ++MR
Sbjct: 580 TLIRAHLRDGDKAASAELIREMR 602



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TY +++  L      +    + ++M   G+   + T+ I ++      + +KA
Sbjct: 430 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 489

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F+ M K + K  +     ++E + ++    +   LF  L  +   PN+ TY  ++ G
Sbjct: 490 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 549

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            C  + L EA  +  +M + G  P+   +N ++   L+ G ++ + +L   M++
Sbjct: 550 LCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 166/349 (47%), Gaps = 21/349 (6%)

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQ 334
           L S+  F   ++A A  K+    +++ E M + +   G+ T N L+    R S++     
Sbjct: 44  LPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALA 103

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LL   +K  + P++ T + LL G+C  K + +A  + ++M++ G++PD +    ++ GL 
Sbjct: 104 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 163

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
              K S+A+ L + M  +G  PN+ +Y +++   CK+                    +  
Sbjct: 164 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 223

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           ++  +I      R +D   +L KEME +G  P+ +TY++LI  +       +A ++  +M
Sbjct: 224 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 283

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +     P + T+N ++ ++ + G +    K++D+MI+R   PD  +Y  L+ G    DR 
Sbjct: 284 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 343

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +A +  E M+ K     V+ YN       ++ R     EL ++M   G
Sbjct: 344 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 392



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 175/405 (43%), Gaps = 57/405 (14%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
             H   TYN +++   R  Q    +++L +M + G   S+ T    +N +   K    AV
Sbjct: 78  IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 137

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+ + M +  ++    T   L+  L       EA  L D++  R   PNL TY V++ G 
Sbjct: 138 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 197

Query: 359 CR---------VKNLMEAGRV------WNEMID--------------------KGFKPDV 383
           C+         + N MEA ++      +N +ID                    KG +P+V
Sbjct: 198 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 257

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV-------- 435
           V ++ ++  L   G+ SDA +L   M  K  +PN+ ++  +I  F K+   V        
Sbjct: 258 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 317

Query: 436 ------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                       Y  L+ GF    R+D    + + M  + C PD +TYN LIK     K 
Sbjct: 318 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 377

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            ++   +++EM   G      TY  +++  F  G+ +  +KV+ +M+  G  PD  +Y++
Sbjct: 378 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 437

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L+ GL +  +  +A +  + M +  +K  +  Y      + +AG+
Sbjct: 438 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 482



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 169/383 (44%), Gaps = 22/383 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TY  +++ L +    +  +++L +M   K    +  F   +++    +    A
Sbjct: 182 GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 241

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F+ M     +  V T + L+  L    +    +QLL D ++ +  PNL T+  L+  
Sbjct: 242 LNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDA 301

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +    +EA +++++MI +   PD+  +N ++ G     +   A ++FE M +K   P+
Sbjct: 302 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 361

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I  FCK                     +   YT LI G  +    D    + K
Sbjct: 362 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 421

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G PPD +TY+ L+  +      ++A+ ++  M +S  K  I+ Y  +++   + G
Sbjct: 422 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 481

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             + G  ++  +  +G  P+  +Y  +I GL S+    EAY  L++M E G       YN
Sbjct: 482 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYN 541

Query: 578 KFAADLSRAGRSYVLDELAQKMR 600
                  R G      EL ++MR
Sbjct: 542 TLIRAHLRDGDKAASAELIREMR 564



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TY +++  L      +    + ++M   G+   + T+ I ++      + +KA
Sbjct: 392 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 451

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F+ M K + K  +     ++E + ++    +   LF  L  +   PN+ TY  ++ G
Sbjct: 452 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 511

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            C  + L EA  +  +M + G  P+   +N ++   L+ G ++ + +L   M++
Sbjct: 512 LCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 184/418 (44%), Gaps = 34/418 (8%)

Query: 161 NNSESEITSVSYKSTADPREIERVCKVIDELFSLDR---------NMEAVLDECGINLSH 211
           N + S     + +S+A  + I R  K   +   +D          N+EA L+    +LS 
Sbjct: 50  NRTSSNTPEETGESSASAKTIPRYTKWTPQFARVDEVLKILQKTGNVEAALESWDKSLSA 109

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPG-FAHNSRTYNSMMSILGRARQFETMVSMLEE 270
             +V VL       + A  FF W   +P  +  N  TYN M+ IL   RQ E    ++EE
Sbjct: 110 KNIVTVLNNINRWEK-ALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEE 168

Query: 271 MGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M  +G+     TF   +N     ++ ++A+  FE M          T N +++  GR   
Sbjct: 169 MTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGR 228

Query: 330 PKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             EA  L++KLK   +  +  TY  +   + R  +     ++  EM D G  P+ V  N 
Sbjct: 229 VNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNT 288

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA--------------- 433
           ++  L K GK + A K+F  M+  G SP   + +I++  + +  A               
Sbjct: 289 LMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEG 348

Query: 434 -----AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                AVY  L+       R++   D+LKEM+  GC PD LTY   +     + M D A 
Sbjct: 349 WKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLI 545
           R++ ++V    KP    + +++++    G  E   K++DEM+  GCC PD+    +L+
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLL 466



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 130/284 (45%), Gaps = 18/284 (6%)

Query: 296 KKAVAIFELMNKYK--FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
           +KA+A FE +      ++    T N +L+ L   +  + ++ L +++  R   P+  T++
Sbjct: 123 EKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFS 182

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+    R +   EA + +  M  +G  PD V +N +++   ++G+ ++A++L+E +K+ 
Sbjct: 183 TLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKS- 241

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                      + WK    +   Y  +   +        +  L++EM + G  P+ +  N
Sbjct: 242 -----------VNWKL---DTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMN 287

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+  +      ++A +++ EM  SG  PT  T +++++ Y + G Y+   +V++ +   
Sbjct: 288 TLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTE 347

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G   D   Y  L+   +   R  +A   L+EM   G     L Y
Sbjct: 348 GWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTY 391



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 21/290 (7%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           I  +L N+ R +   +A   F+ LK R   +  N  TY V+L      + L  + ++  E
Sbjct: 112 IVTVLNNINRWE---KALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEE 168

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M  +G +PD    + ++    +  +  +A+K FE MK++G  P+                
Sbjct: 169 MTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPD---------------E 213

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  +I  +G   R++   +L ++++      D +TY A+  +          +++ +E
Sbjct: 214 VTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQE 273

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M  SG  P     N +M +  + G     +KV++EM   G  P   + ++L+        
Sbjct: 274 MRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGA 333

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +A++  E +  +G K  V  YN         GR    +++ ++M+ +G
Sbjct: 334 YDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAG 383


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 194/480 (40%), Gaps = 72/480 (15%)

Query: 208 NLSHNLVVDVLERFRHARRP--AFRFFCWA-GDKPGFAHN------------------SR 246
           +L+  LV+ +L       RP     FF WA  + P F HN                  S 
Sbjct: 47  HLTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLPSLFSHRKFSD 106

Query: 247 TYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
             + ++  +   R+ +  +S+L      K LL       A+ A+  + +   A  IF+ M
Sbjct: 107 AKSLLLGFIATDRRHDLHLSILRLTSPSKALLD-----TAIGAYVQSGQPHHAFQIFKKM 161

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLF------DKLKHRFTPNLTTYTVLLGGWC 359
            + + +  + T N LL +L R   P    + F      D +K    PN+ T+ +++ G+C
Sbjct: 162 KRLRLRPNLLTCNTLLNSLVR--YPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYC 219

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                 +A    N M      PD V +N +L+ L K G+  DA  L   MK++G  PN  
Sbjct: 220 LENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRN 279

Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y I+++ +CK                     +   Y  LI G  N  R++  + L  EM
Sbjct: 280 TYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           E     PD ++YN LI          EA ++ +EM   G KP   T+N+++K Y + G  
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +       +M   G  PD  +Y  LI G       GEA++ ++EM  K MK   +  N  
Sbjct: 400 DDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTI 459

Query: 580 AADLSRA--------------GRSYVLDELAQKMRFSGKFEVSNV---LARWAETTKNRV 622
              L R                R Y +DE++      G F+  NV   L  W E  +  +
Sbjct: 460 LRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEI 519



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 17/343 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++  L +  +      +L +M  +GLL +  T+ I +  +      K+A  + ELM
Sbjct: 245 TYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      V T N L+  L      +EA  L D++++ +  P++ +Y  L+ G      +
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA ++  EM +KG KP+ V HNIM++   K GK  DA      M+  G SP+  +Y  +
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I  +CK             GN   M   +  + EM  +    D +T N +++ +  +K  
Sbjct: 425 INGYCKA------------GN---MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKL 469

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +EA ++     + G+     +Y  ++  YF+ GN +   K+WDEM  +   P   +Y  +
Sbjct: 470 EEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCI 529

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           IGGL    ++ +A   L E+LE G+      YN       R G
Sbjct: 530 IGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 163/381 (42%), Gaps = 22/381 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN +++ L    + E    + +EM    LL  + ++   +N      +  +A  + E M
Sbjct: 315 TYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEM 374

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           ++   K    T N +++   +     +A     K++   F+P+  TY  L+ G+C+  N+
Sbjct: 375 SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNM 434

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA R  +EM  K  K D V  N +L  L +  K  +A KL    + +G   +  SY  +
Sbjct: 435 GEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTL 494

Query: 425 I---------------WKFCKQNAAV-----YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I               W   K+   +     Y C+I G     + +     L E+ E G 
Sbjct: 495 IVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGL 554

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN ++     +   ++A + + +MV + FKP + T N++++     G  E   K
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALK 614

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +++  + +G   D  +Y  LI  L  + R  +A+  L EM EK +      YN     L+
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 585 RAGRSYVLDELAQKMRFSGKF 605
            +GR    +E   KM   G  
Sbjct: 675 DSGRIREAEEFMSKMLEKGNL 695



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 160/352 (45%), Gaps = 41/352 (11%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AFR     G K     +S T N+++  L R ++ E    +L    ++G    E ++   +
Sbjct: 437 AFRTMDEMGRK-NMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFT 345
             +       +A+ +++ M + +      T NC++  L +  K  +    L + L+    
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLL 555

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+ TTY  +L G+CR  ++ +A +  N+M++  FKPDV   NI+L GL   G    A+KL
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKL 615

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F    +KG + +  +Y  +I   CK+                R+D  ++LL EMEE+   
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEG---------------RLDDAFNLLSEMEEKELG 660

Query: 466 PDGLTYNALI-----------------KLMKIQKMPDEAVRIYK-EMVRSGFKPTIH--- 504
           PD  TYNA+I                 K+++   +PD+ +++ K E V +          
Sbjct: 661 PDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSS 720

Query: 505 --TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              Y+  +K     G Y+   +++ E  ++G   D ++Y  L+ GLI + +S
Sbjct: 721 SVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKS 772


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 159/350 (45%), Gaps = 21/350 (6%)

Query: 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           ++ E  + ++E + + G   +  +   ++ F  A     A  + + M K  F+  V T N
Sbjct: 126 KKIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYN 185

Query: 319 CLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+ N  GR +L    +++   LK    P + TYT+L+        + EA ++ +EM+ +
Sbjct: 186 ILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSR 245

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------WKF- 428
           G +PD   +N+++ G+ K G    A +    +   G    V +Y I++        W++ 
Sbjct: 246 GLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYG 305

Query: 429 -----------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                      C+ N   Y+ LIT      ++D   ++LK M+E+   PDG +Y+ LI  
Sbjct: 306 EKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISA 365

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +   D A+    +M+  G  P I +YN I+ S  + GN +    +++++   GC P+
Sbjct: 366 LCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPN 425

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             SY  L G L S      A   + EML  G+    + YN   + L R G
Sbjct: 426 AGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDG 475



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 129/280 (46%), Gaps = 21/280 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           + P++   T L+ G+  +K + +A +V  E+++K  KPDV A+N ++ G  K  +   A 
Sbjct: 108 YKPDVILCTKLIKGFFNMKKIEKAIQVM-EILEKHGKPDVFAYNAVISGFCKADRVDHAS 166

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGF 443
           K+ + MK +G  P+V +Y I+I  FC                    K     YT LI   
Sbjct: 167 KVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEAT 226

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             +  +D    LL EM  RG  PD  TYN ++  M  + M D A      + ++G    +
Sbjct: 227 ITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGV 286

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TYN++++     G +E G K+  +M+ +GC P+  +Y+ LI  L    +  EA   L+ 
Sbjct: 287 STYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKV 346

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M EK +      Y+   + L R G+  +  E    M   G
Sbjct: 347 MKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGG 386



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           +  F   K+ +KA+ + E++ K+  K  V   N ++    ++     A  + D++K R F
Sbjct: 119 IKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGF 177

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ TY +L+G +C    L  A RV ++++    KP V+ + I++E  +  G   +A+K
Sbjct: 178 EPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMK 237

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L + M ++G  P+  +Y +++   CK+                 +D  ++ L  + + GC
Sbjct: 238 LLDEMLSRGLRPDRYTYNVVVNGMCKEGM---------------LDRAFEFLSRISKNGC 282

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
                TYN L++ +  +   +   ++  +M+  G +P   TY+ ++ +  + G  +  + 
Sbjct: 283 VAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKN 342

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V   M  +   PD  SY  LI  L  + +   A ++L++M+  G    +L YN   A L 
Sbjct: 343 VLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLC 402

Query: 585 RAGRS 589
           + G +
Sbjct: 403 KNGNA 407



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 16/255 (6%)

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
           T +   L   C+     E+      M+++G+KPDV+    +++G   + K   AI++ E+
Sbjct: 78  TNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEI 137

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           ++  G  P+V +Y  +I  FCK +               R+D    +L  M++RG  PD 
Sbjct: 138 LEKHG-KPDVFAYNAVISGFCKAD---------------RVDHASKVLDRMKKRGFEPDV 181

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN LI     +   D A+R+  ++++   KPT+ TY +++++    G  +   K+ DE
Sbjct: 182 VTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDE 241

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M+ RG  PD  +Y V++ G+  +     A+++L  + + G  A V  YN    DL   G+
Sbjct: 242 MLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301

Query: 589 SYVLDELAQKMRFSG 603
               ++L   M   G
Sbjct: 302 WEYGEKLMSDMLVKG 316



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 146/353 (41%), Gaps = 18/353 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TY  ++         +  + +L+EM  +GL     T+ + +N         +A      +
Sbjct: 218 TYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRI 277

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           +K    AGV T N LL +L    K     +L+ D L     PN  TY+ L+   CR   +
Sbjct: 278 SKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKI 337

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V   M +K   PD  +++ ++  L + GK   AI+  + M + G  P++ SY  +
Sbjct: 338 DEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSI 397

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   CK   A               D   ++ +++ E GCPP+  +YN L   +      
Sbjct: 398 LASLCKNGNA---------------DEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDK 442

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTV 543
             A+ +  EM+ +G  P   TYN ++    + G  +   ++  +M     C P   SY  
Sbjct: 443 IRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNT 502

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           ++ GL    R  +A + L  M+ +G       Y      +  AG  Y   ELA
Sbjct: 503 VLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELA 555



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 3/189 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
             A +  +Y+ ++S L R  + +  +  L++M   G L  + ++   + +        +A
Sbjct: 351 ALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEA 410

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + IFE + +        + N L   L  S     A  ++ + L +   P+  TY  L+  
Sbjct: 411 LNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISC 470

Query: 358 WCRVKNLMEAGRVWNEMID-KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            CR   + +A  +  +M + +  +P V+++N +L GL K+ +  DAI++   M  +G  P
Sbjct: 471 LCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLP 530

Query: 417 NVRSYTIMI 425
           N  +YT++I
Sbjct: 531 NETTYTLLI 539


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 168/350 (48%), Gaps = 22/350 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKA 298
           GF H+  +Y+S++  L R+R+FE + ++L  +  + +   ET  +A+   +  A   +K 
Sbjct: 76  GFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKG 135

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F  M  +     + + N LL  L    +  K +++     +  F PN  +Y +++ G
Sbjct: 136 IELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKG 195

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W +     +A  +++EM++KG +P VV +N  L  L + G+   A+ LF+ M  KG  PN
Sbjct: 196 WIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPN 255

Query: 418 VRSYTIMI--WKF------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y +++  W F                  CK     Y  L+T  G    +D +  LL 
Sbjct: 256 AVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLN 315

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM++R   PD +TYN L+  +  +    +A ++  +M   G  P   TY M++  Y   G
Sbjct: 316 EMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAG 375

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++   K+ + M+  G  P   ++  L+ GL+  + + +   ++ E +EK
Sbjct: 376 DFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEK 425



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 142/314 (45%), Gaps = 18/314 (5%)

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
            K+  +A+A+FE  ++  FK    + + L+  L RS+  +  + +   L++R    N T 
Sbjct: 59  VKDPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETL 118

Query: 351 YTVLLGGWCRVKNLMEAG-RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           +  L+  + +  +L+E G  ++++M        + + N++L  L+   + S A ++F+  
Sbjct: 119 FVALIQHYGKA-HLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQA 177

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                 PN  SY IMI  + K+      C               +L  EM E+G  P  +
Sbjct: 178 YEMDFRPNSVSYNIMIKGWIKKGGWEQAC---------------NLFDEMLEKGVQPSVV 222

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TYN+ + ++  +   D A+ ++K M   G  P   TY ++M+ +   G Y+  +K+  +M
Sbjct: 223 TYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              GC     +Y VL+  L       E    L EM ++ +K  V+ YN     L + G+ 
Sbjct: 283 EFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKV 342

Query: 590 YVLDELAQKMRFSG 603
               ++  KM+  G
Sbjct: 343 GDAYKVLVKMQVGG 356


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 26/381 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M++IL   G+ ++ +  +  +E  G K   ++ T+   +N +    + + A  IF+
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKP--NVVTYNTVINGYCLRGKFEAASKIFK 276

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
            M     K    T N  +  L + +  +EA  +L   L+    PN  TY  L+ G C   
Sbjct: 277 TMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKG 336

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L +A    +EM+++G    V  +N+++  L    +  +A  + + M+ KG  P+V +Y 
Sbjct: 337 DLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYN 396

Query: 423 IMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I I  +C+   A                     YT LI  FG R RM    +  K+  + 
Sbjct: 397 IQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKE 456

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NALI    +    D A ++ KEM  +   P   T+N +M+ Y +    E  
Sbjct: 457 GMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEA 516

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           +K+ DEM  RG  PD  SY  LI G   +    +A +  +EML  G    +L YN     
Sbjct: 517 KKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQG 576

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
            S+ G +   +EL ++M+  G
Sbjct: 577 YSKIGEADHAEELLREMQSKG 597



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 162/328 (49%), Gaps = 22/328 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS +S L + R+ E    +L ++ E GL+ +  T+   ++      +  KA A  + M
Sbjct: 289 TYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM 348

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                 A V T N L+  L   K  +EA+ +  +++ +   P++ TY + + G+CR  N 
Sbjct: 349 MNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNA 408

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  +++EM++K  +P V  +  +++   K  + S+A + F+    +G  P++  +  +
Sbjct: 409 KKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468

Query: 425 IWKFC--------------KQNAAV------YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   C                NA V      +  L+ G+   R+++    LL EM+ERG 
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD ++YN LI     +    +A+ ++ EM+  GF PT+ TYN +++ Y + G  +   +
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEE 588

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           +  EM  +G  PDD++Y  +I  + + D
Sbjct: 589 LLREMQSKGITPDDSTYLYVIEAMKTND 616



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 29/281 (10%)

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +L R++L  +  L+FD              +LL  +C+ +   EA    N M +    P 
Sbjct: 136 SLARNRLNVKTTLVFD--------------LLLSAYCQFRKPDEALECLNLMKENEIIPK 181

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
               N +L  LLK+ K   A  ++E M       ++ ++ IMI   C++           
Sbjct: 182 TETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCRE----------- 230

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
            G  ++     D +  ME  G  P+ +TYN +I    ++   + A +I+K M     KP 
Sbjct: 231 -GKWKKAK---DFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPD 286

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
            +TYN  +    +    E    V  +++  G  P+  +Y  LI G  ++    +A+ Y +
Sbjct: 287 CYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRD 346

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EM+ +G+ A V  YN     L    R    +++ ++MR  G
Sbjct: 347 EMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 165/352 (46%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  +++S++ +  R  +    ++  E+M   GL+     + I +N +    +   A
Sbjct: 359 GVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGA 418

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M +      V T N LL  L R K+  +A  LF ++  R   P+  T T L+ G
Sbjct: 419 LKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHG 478

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  N+ +A  ++  M  +  KPDVV +N +++G  K+G+   A +L+  M ++   P+
Sbjct: 479 YCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPS 538

Query: 418 VRSYTIMIWKFCKQN------------------AAVYTC--LITGFGNRRRMDIVYDLLK 457
             S++I+I  FC                       + TC  +I G+     +    D L 
Sbjct: 539 YISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLN 598

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   G PPD +TYN LI     ++  D A  +   M   G  P + TYN I+  + + G
Sbjct: 599 TMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHG 658

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +    V  +MI +G  PD ++YT LI G +S+D   EA++  +EML++G 
Sbjct: 659 RMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGF 710



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 17/301 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TYN++++ L R +  +    + +EM E+G+     T    ++ +       KA
Sbjct: 429 GCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKA 488

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++FE M     K  V T N L++   +  ++ K  +L +D +     P+  ++++L+ G
Sbjct: 489 LSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILING 548

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C +  + EA R+W+EM +KG KP +V  N +++G L+ G  S A      M ++G  P+
Sbjct: 549 FCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPD 608

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  +I  F K+                  D  + L+  MEERG  P+ +TYNA++  
Sbjct: 609 CITYNTLINSFVKE---------------ENFDRAFFLINNMEERGLLPNLVTYNAILGG 653

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   EA  +  +M+  G  P   TY  ++  Y    N +   +V DEM++RG  PD
Sbjct: 654 FSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713

Query: 538 D 538
           D
Sbjct: 714 D 714



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 175/391 (44%), Gaps = 28/391 (7%)

Query: 233 CWAGD--KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAF 289
           C AG   KPG      TYN++++ L +   +E    +L+EM   GL  +  TF   +   
Sbjct: 284 CMAGKGLKPGLF----TYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVES 339

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNL 348
              ++  +A  +F  M +      + + + ++    R+     A   F+K+K     P+ 
Sbjct: 340 CRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDT 399

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
             YT+L+ G+CR  ++  A ++ NEM+++G   DVV +N +L GL +     DA +LF+ 
Sbjct: 400 VIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKE 459

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
           M  +G  P+  + T +I  +CK                     +   Y  L+ GF     
Sbjct: 460 MVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGE 519

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           M+   +L  +M  R   P  ++++ LI       +  EA R++ EM   G KPT+ T N 
Sbjct: 520 MEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNT 579

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           I+K Y + GN        + MI  G  PD  +Y  LI   + ++    A+  +  M E+G
Sbjct: 580 IIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERG 639

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +   ++ YN      SR GR    + +  KM
Sbjct: 640 LLPNLVTYNAILGGFSRHGRMQEAEMVLHKM 670



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 22/352 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ T+N M+    R         +  EM ++G++  + +F   +  F+   E  +A
Sbjct: 324 GLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRA 383

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +A FE M              L+    R+     A  + +++  R    ++ TY  LL G
Sbjct: 384 LAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG 443

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR K L +A  ++ EM+++G  PD      ++ G  K G  + A+ LFE M  +   P+
Sbjct: 444 LCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD 503

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  ++  FCK                     +   ++ LI GF +   +   + L  
Sbjct: 504 VVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWD 563

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+E+G  P  +T N +IK         +A      M+  G  P   TYN ++ S+ +  
Sbjct: 564 EMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEE 623

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           N++    + + M  RG  P+  +Y  ++GG     R  EA   L +M++KG+
Sbjct: 624 NFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGI 675



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 148/328 (45%), Gaps = 20/328 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DK 339
            F + +  +  A++ ++    F+L+ K  F   ++  N LL  + +      A  ++ D 
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +K     N+ T  +++   C+   L   G   +EM +KG   D+V +N ++    + G  
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           S+A  L + M  KG  P + +Y  +I   CK+            G+  R   V D   EM
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNALINGLCKE------------GSYERAKRVLD---EM 320

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  P+  T+N ++     ++   EA R++ EM++ G  P + +++ I+  + + G  
Sbjct: 321 LGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNG-- 378

Query: 520 EMGRKV--WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           E+GR +  +++M   G  PD   YT+LI G    D    A K   EM+E+G    V+ YN
Sbjct: 379 ELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYN 438

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF 605
                L R       DEL ++M   G F
Sbjct: 439 TLLNGLCRGKMLDDADELFKEMVERGVF 466



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 15/240 (6%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           +  + +L+  + + + L E    +  +  +GF   + A N +L  ++K+G    A K++E
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                G   NV +  IM+   CK                 ++D V   L EMEE+G   D
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDG---------------KLDNVGVYLSEMEEKGVYAD 258

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN L+     + +  EA  +   M   G KP + TYN ++    + G+YE  ++V D
Sbjct: 259 LVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLD 318

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           EM+  G CP+  ++  ++     ++   EA +   EML++G+   ++ ++      SR G
Sbjct: 319 EMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNG 378


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 181/381 (47%), Gaps = 37/381 (9%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE--EMGEKGLLSMET--FK 283
           A +FF WA +  G+ H  ++Y SM+ ILGR R   T  + L   E   +G++ +E   F 
Sbjct: 95  ALQFFNWAQEM-GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFN 153

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343
             M  F  A   ++++ +F +M  +     V T N LL  L +      A+ ++D++   
Sbjct: 154 SLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLST 213

Query: 344 F--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           +  TP+  T+ +L+ G+C    + +  R++N++   G +PDVV +N +++GL + GK + 
Sbjct: 214 YGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTV 273

Query: 402 AIKLFEVMKAKGP--SPNVRSYTIMIWKFC--------------------KQNAAVYTCL 439
           A  + + M  K    +PNV +YT +I  +C                    K N   Y  L
Sbjct: 274 AYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTL 333

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           I G    R+ + + D+L+     G   PD  T+N L+         D+A+++++ M    
Sbjct: 334 IKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELK 393

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-------GCCPDDNSYTVLIGGLISQ 551
            +P   TY+ +++S  Q G+YE    + D+++ R       GC P   +Y  +   L   
Sbjct: 394 IQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCET 453

Query: 552 DRSGEAYKYLEEMLEKGMKAP 572
            ++ +A K   +++ +G + P
Sbjct: 454 GKTKKAEKAFRQLMRRGTQDP 474



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 172/393 (43%), Gaps = 34/393 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF--KIAMNAFAAAKERKK 297
           G + +  T+NS+++IL +  +      + +EM     ++ +TF   I +  F        
Sbjct: 179 GVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDD 238

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVL 354
              IF  ++++  +  V T N L++ L R+     A  +   +  +     PN+ TYT L
Sbjct: 239 GFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTL 298

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C  + + +A  V+ EM+++G K + + +N +++GL +  K      + E     G 
Sbjct: 299 IRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGT 358

Query: 415 -SPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVY 453
            SP+  ++  ++   C                    + ++A Y+ L+         +   
Sbjct: 359 FSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAE 418

Query: 454 DLLKEMEER-------GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           DLL ++ ER       GC P    YN + K +       +A + +++++R G +    +Y
Sbjct: 419 DLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDP-PSY 477

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++  + + G +E G ++   M+R+   PD  +Y  LI GL+  D+   A + LE+ML 
Sbjct: 478 KTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLR 537

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
              +     ++   A L   GR+     L Q M
Sbjct: 538 SSHRPNSSTFHSILAKLLEQGRASESASLIQLM 570



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 150/345 (43%), Gaps = 46/345 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFE 303
           TYN+++  L RA +     ++++ MG+K +    ++ T+   +  + A +E +KA+A+FE
Sbjct: 257 TYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFE 316

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH---------RFTPNLTTYTVL 354
            M     KA   T N L++ L  ++        F+K+K           F+P+  T+  L
Sbjct: 317 EMVNQGLKANNITYNTLIKGLCEARK-------FEKIKDILEGTAGDGTFSPDTCTFNTL 369

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE------- 407
           +   C   NL +A +V+  M +   +PD   ++ ++  L + G    A  L +       
Sbjct: 370 MHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKI 429

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC--P 465
           ++   G  P V +Y  +    C+             G  ++ +  +   +++  RG   P
Sbjct: 430 LLSGDGCKPLVAAYNPIFKYLCET------------GKTKKAEKAF---RQLMRRGTQDP 474

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P   +Y  LI     +   +    +   M+R  F P   TY  ++          +  + 
Sbjct: 475 P---SYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQS 531

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            ++M+R    P+ +++  ++  L+ Q R+ E+   ++ ML+K ++
Sbjct: 532 LEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIR 576



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 18/222 (8%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N ++    + G   ++IK+F +MK+ G SP+V                 +  L+T    R
Sbjct: 153 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSV---------------VTFNSLLTILLKR 197

Query: 447 RRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            R ++   +  EM    G  PD  T+N LI+   +  M D+  RI+ ++ R G +P + T
Sbjct: 198 GRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVT 257

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGC--CPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           YN ++    + G   +   V   M ++     P+  +YT LI G  ++    +A    EE
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           M+ +G+KA  + YN     L  A +   + ++ +     G F
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTF 359



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 148/381 (38%), Gaps = 82/381 (21%)

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFD----- 338
            +      ++  KA+  F    +  +     +   +LE LGR++ L      LF      
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141

Query: 339 ----KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
               KL+ RF      +  L+  + R     E+ +V+  M   G  P VV  N +L  LL
Sbjct: 142 RGIVKLEARF------FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILL 195

Query: 395 KIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKF--------------------CKQNA 433
           K G+ + A K++ E++   G +P+  ++ I+I  F                    C+ + 
Sbjct: 196 KRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDV 255

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIY 491
             Y  L+ G     ++ + Y+++K M ++     P+ +TY  LI+    ++  ++A+ ++
Sbjct: 256 VTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVF 315

Query: 492 KEMVRSG------------------------------------FKPTIHTYNMIMKSYFQ 515
           +EMV  G                                    F P   T+N +M  +  
Sbjct: 316 EEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCH 375

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-------G 568
            GN +   KV++ M      PD  +Y+ L+  L       +A   L+++LE+       G
Sbjct: 376 AGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDG 435

Query: 569 MKAPVLDYNKFAADLSRAGRS 589
            K  V  YN     L   G++
Sbjct: 436 CKPLVAAYNPIFKYLCETGKT 456



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERG---CPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
           Y  ++   G  R ++   + L  +E+R       +   +N+L++      +  E+++++ 
Sbjct: 114 YFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFT 173

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQ 551
            M   G  P++ T+N ++    + G   M +KV+DEM+   G  PD  ++ +LI G    
Sbjct: 174 IMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMN 233

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
               + ++   ++   G +  V+ YN     L RAG+  V   + + M
Sbjct: 234 GMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGM 281


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 19/370 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  + +++E M  +G+   + T+   ++        ++AV +F+ 
Sbjct: 230 TYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQ 289

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S+ P+EA  +  +++ + F+P   TY  L+  + +   
Sbjct: 290 MKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGL 349

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  +  +M+ KG KPDV  +  +L G  K GK   AI++F  M+A G          
Sbjct: 350 LEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVG---------- 399

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N   +  LI   GNR +   +  +  +++   C PD +T+N L+ +     M
Sbjct: 400 -----CKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGM 454

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             +   I+KEM R+GF     T+N ++ +Y + G+++    V+  M+  G  PD ++Y  
Sbjct: 455 DSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNA 514

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++  L       ++ K L EM +   K   L Y+      +       ++  A+++ +SG
Sbjct: 515 VLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEI-YSG 573

Query: 604 KFEVSNVLAR 613
             E   VL +
Sbjct: 574 SVETHAVLLK 583



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 182/432 (42%), Gaps = 63/432 (14%)

Query: 209 LSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +++N ++DV   F  +RRP  A +      +  GF+  S TYNS++S   +    E  + 
Sbjct: 300 VTYNALLDV---FGKSRRPQEAMKVL-QEMEANGFSPTSVTYNSLISAYAKGGLLEEALD 355

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  +M  KG+   + T+   ++ F  A +   A+ +F  M     K  + T N L++  G
Sbjct: 356 LKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHG 415

Query: 326 RSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                 E   +FD +K    +P++ T+  LL  + +     +   ++ EM   GF  +  
Sbjct: 416 NRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERD 475

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------WKF-------- 428
             N ++    + G    A+ +++ M   G  P++ +Y  ++        W+         
Sbjct: 476 TFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEM 535

Query: 429 ----CKQNAAVYTCLITGFGNRR---RMDI----VY---------------------DLL 456
               CK N   Y+ L+  + N +   RM+     +Y                     DLL
Sbjct: 536 EDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLL 595

Query: 457 KEMEE-------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
            E E        RG  PD  T NA++ +   ++M  +A  I   M  + F P++ TYN +
Sbjct: 596 IETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSL 655

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           M  Y ++ N++   ++  E++ +G  PD  SY  +I       R  EA +   EM +  +
Sbjct: 656 MYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSAL 715

Query: 570 KAPVLDYNKFAA 581
              V+ YN F A
Sbjct: 716 VPDVVTYNTFIA 727



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 16/234 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKL 405
           ++  YT L+  +       +A  ++N+M   G  P ++ +N++L    K+G   S+   L
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTAL 251

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            E M+++G +P++ +Y  +I   C +  ++Y   +              L ++M+  G  
Sbjct: 252 VEAMRSRGVAPDLYTYNTLI--SCCRRGSLYEEAV-------------HLFQQMKLEGFT 296

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYNAL+ +    + P EA+++ +EM  +GF PT  TYN ++ +Y + G  E    +
Sbjct: 297 PDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDL 356

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             +M+ +G  PD  +YT L+ G     +   A +   EM   G K  +  +N  
Sbjct: 357 KTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNAL 410



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 159/344 (46%), Gaps = 30/344 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++++ G+      +  + +EM   G ++  +TF   ++A++      +A+A+++ M
Sbjct: 441 TWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSM 500

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      + T N +L  L R  L ++++ +  +++  R  PN  +Y+ LL  +   K +
Sbjct: 501 LEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEI 560

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI----KLFEVMKAKGPSPNVRS 420
            E    + E I  G    V  H ++L+ L+ +  +SD +    + F  ++ +G SP++ +
Sbjct: 561 -ERMNAFAEEIYSG---SVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITT 616

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRM--------DIVY------------DLLKEME 460
              M+  + ++        I  F +  R          ++Y            ++L+E+ 
Sbjct: 617 LNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVL 676

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           E+G  PD ++YN +I          EA RI+ EM  S   P + TYN  + +Y     + 
Sbjct: 677 EKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFA 736

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
               V   MI++GC PD N+Y  ++      D+  EA  +++ +
Sbjct: 737 EAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNL 780


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 173/381 (45%), Gaps = 21/381 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+ HN  TYN ++  L R  + +   ++ +EM +K       TF I +     + + +KA
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
             +   M +          N L+    ++K   +A + L + +K+   P + TYT ++ G
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ +   +A ++ +EM DKG  P++  +N+++EGL +  K  +A K+ E M  +G  P+
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 418 VRSYTIMIWKFCK-----------------QNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           V +Y   I   CK                  +   YT +I G      +D    +L  M 
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            RGC PD +TY++LI         + A+ +   M++ G +P +  YN ++ +  + G+  
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +  EM RRG  PD  SY   I GL   +R  +A    + M+E+G       Y+   
Sbjct: 302 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361

Query: 581 ADLSRAGRSYVLDELAQKMRF 601
            D+     + +LD L +  RF
Sbjct: 362 VDILL--YTVLLDGLCKGGRF 380



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 165/334 (49%), Gaps = 29/334 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           +Y ++++ L ++   ++   ML+ M  +G    + T+   ++ F    E ++A+ + + M
Sbjct: 216 SYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            K   +  +   N LL  L R   + K   +L +  +  FTP++ +Y   + G C+ + +
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335

Query: 365 MEAGRVWNEMIDKGFKP----------DVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKG 413
            +A  V++ M+++G  P          D++ + ++L+GL K G+  +A  LF +V+  K 
Sbjct: 336 KKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI 395

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V  Y +M+   CK               RR++D    + K+M E+ C  + +T+N 
Sbjct: 396 CEPDVFFYNVMLDSHCK---------------RRQIDKALQIHKQMLEKNCC-NVVTWNI 439

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+  + +     +A  +   MV  GF P   TY  ++ +  + G      ++++E ++ G
Sbjct: 440 LVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGG 499

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           C PD  +Y+ LI GL+ ++ + EAY    +++E+
Sbjct: 500 CVPDVVTYSALITGLVHENMAEEAYLLFTKLVER 533



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 172/384 (44%), Gaps = 35/384 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++  L +A +    V +L+EM +KG   ++ T+ + +      ++  +A  + E M
Sbjct: 114 TYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM 173

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
               +   V T N  ++ L +     EA+    ++    TP++ +YT ++ G C+  +L 
Sbjct: 174 AVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLD 231

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+ + M ++G  PDVV ++ +++G  K G+   A+ L + M   G  PN+ +Y  ++
Sbjct: 232 SASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 291

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
               +                     +   Y   I G     R+     +   M ERGC 
Sbjct: 292 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCT 351

Query: 466 PDGLTYNALIKLMKIQKMP----------DEAVRIYKEMVRSGF-KPTIHTYNMIMKSYF 514
           P+  +Y+ LI  + +  +           DEA  ++ +++     +P +  YN+++ S+ 
Sbjct: 352 PNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHC 411

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +    +   ++  +M+ + CC +  ++ +L+ GL   DR  +A   L  M+++G     +
Sbjct: 412 KRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFV 470

Query: 575 DYNKFAADLSRAGRSYVLDELAQK 598
            Y      + + G+S    EL ++
Sbjct: 471 TYGTLVDAMCKCGKSAAALELFEE 494



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 146/335 (43%), Gaps = 43/335 (12%)

Query: 170 VSYKSTADP----REIERVCKVIDELFSLDRNMEAVLDECGINL-SHNLVVDVLERFRHA 224
           V+Y S  D      E+ER   ++D +  L          C  N+ ++N ++  L R  H 
Sbjct: 250 VTYSSLIDGFCKGGEVERAMGLLDSMLKLG---------CRPNMVAYNSLLGALHRLGHI 300

Query: 225 RRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--------- 275
            +          ++ GF  +  +YN+ +  L +A + +   ++ + M E+G         
Sbjct: 301 GKAEDMLV--EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYS 358

Query: 276 --LLSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
             ++ +  + + ++         +A A+F +++++   +  V   N +L++  + +   +
Sbjct: 359 MLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 418

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A  +  ++  +   N+ T+ +L+ G C    L +A  +   M+D+GF PD V +  +++ 
Sbjct: 419 ALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 478

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           + K GK + A++LFE     G  P+V                 Y+ LITG  +    +  
Sbjct: 479 MCKCGKSAAALELFEEAVKGGCVPDV---------------VTYSALITGLVHENMAEEA 523

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
           Y L  ++ ER   PD  T   L + +K+   P +A
Sbjct: 524 YLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKA 558



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           + N   Y  L+       R D    + +EM ++ C PD  T+  L++ +      ++A +
Sbjct: 4   EHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARK 63

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +   M   G  P    YN ++  Y +  ++    K   EM++  C P   +YT ++ GL 
Sbjct: 64  LLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLC 123

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
             +R+ +A K L+EM +KG    +  YN     L    +     ++ ++M   G F
Sbjct: 124 KAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 173/385 (44%), Gaps = 24/385 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   ++  Y +++  L          ++L EM   G  + + TF   +         ++A
Sbjct: 205 GCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREA 264

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             + + M       GV T   LL+ L R +   EA+ +  ++      N+  +  ++GG 
Sbjct: 265 ARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL---NVVLFNTVIGGC 321

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
                L EA  ++  M  KG +PD   ++I++ GL K+G+ S A++L   M+ KG +PNV
Sbjct: 322 LAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNV 381

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++  FCK                     N+  Y  +I       RMD    L++E
Sbjct: 382 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 441

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  +GC PD  +YN +I  +   +  +EA  +++ ++  G      TYN I+ +  + G 
Sbjct: 442 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 501

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++   ++  EMI  GC  D  SY  LI  +        +   LEEM EKG+K   + YN 
Sbjct: 502 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 561

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
             ++L +  R     EL+++M   G
Sbjct: 562 LISELCKERRVRDALELSKQMLNQG 586



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 161/381 (42%), Gaps = 29/381 (7%)

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
           L R R A R   R     G  PG      TY  ++  L R RQ +   +ML  + E   L
Sbjct: 258 LGRVREAARLVDRMMT-KGCMPGVM----TYGFLLQGLCRVRQADEARAMLGRVPE---L 309

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL 336
           ++  F   +    A  +  +A  ++E M     +    T + L+  L +  ++    +LL
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL 369

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +  K  F PN+ TYT++L  +C+     +   +  EM  KG   +   +N M+  L K 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           G+  +A+ L + M+++G +P++ SY  +I+  C                      N   Y
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 489

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             +I       R      L KEM   GC  D ++YN LIK M      D ++ + +EM  
Sbjct: 490 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 549

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G KP   +YN+++    +        ++  +M+ +G  PD  +Y  LI GL        
Sbjct: 550 KGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHA 609

Query: 557 AYKYLEEMLEKGMKAPVLDYN 577
           A   LE++  + +   ++ YN
Sbjct: 610 ALNLLEKLHNENVHPDIITYN 630



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 54/361 (14%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           G +P F    R+YN ++S+L RA      +++   M  +  +   TF   + A A  +  
Sbjct: 134 GVQPSF----RSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCR-- 187

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
                                       LGR+   +   LL    +H   P+   Y  ++
Sbjct: 188 ----------------------------LGRAN--EALALLRGMARHGCVPDAVLYQTVI 217

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C    + EA  + NEM+  G   DV   + ++ G+  +G+  +A +L + M  KG  
Sbjct: 218 HALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCM 277

Query: 416 PNVRSYTIMIWKFCKQ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           P V +Y  ++   C+                 N  ++  +I G     ++    +L + M
Sbjct: 278 PGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETM 337

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             +GC PD  TY+ L+  L K+ ++   AVR+ +EM + GF P + TY +++ S+ + G 
Sbjct: 338 GLKGCQPDAHTYSILMHGLCKLGRI-SSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++  R + +EM  +G   +   Y  +I  L    R  EA   ++EM  +G    +  YN 
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 579 F 579
            
Sbjct: 457 I 457



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TY+ +M  L +  +  + V +L EM +KG   ++ T+ I +++F         
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            A+ E M+           N ++  L +     EA  L  +++ +   P++ +Y  ++  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 460

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C  + + EA  ++  ++++G   + + +N ++  LL+ G+  DA++L + M   G S +
Sbjct: 461 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 520

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY  +I   CK             GN  R  +   LL+EM E+G  P+ ++YN LI  
Sbjct: 521 VVSYNGLIKAMCKD------------GNVDRSLV---LLEEMAEKGIKPNNVSYNILISE 565

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  ++   +A+ + K+M+  G  P I TYN ++    + G       + +++      PD
Sbjct: 566 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625

Query: 538 DNSYTVLI 545
             +Y +LI
Sbjct: 626 IITYNILI 633



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 23/281 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K GFA N  TY  ++    +   ++   ++LEEM  KGL L+ + +   + A       
Sbjct: 373 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 432

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            +A+ + + M        + + N ++ +L  ++  +EA+ +F+ L +     N  TY  +
Sbjct: 433 DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTI 492

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    R     +A R+  EMI  G   DVV++N +++ + K G    ++ L E M  KG 
Sbjct: 493 IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGI 552

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN  SY I+I + CK+                    +   Y  LI G      M    +
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612

Query: 455 LLKEMEERGCPPDGLTYNALIKL-MKIQKMPDEAVRIYKEM 494
           LL+++      PD +TYN LI    K++ + D A+ + + M
Sbjct: 613 LLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +YN+++  L    Q E    M E + E+G+++   T+   ++A       + AV + + M
Sbjct: 453 SYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
             +     V + N L++ + +      + +L +++  +   PN  +Y +L+   C+ + +
Sbjct: 513 ILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRV 572

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  +  +M+++G  PD+V +N ++ GL K+G    A+ L E +  +   P++ +Y I+
Sbjct: 573 RDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 632

Query: 425 IWKFCK----QNAAVY----TCLITGFGNRRRMDIVYD 454
           I   CK     +AA+        +   G+RR M I+ D
Sbjct: 633 ISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPD 670



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 22/228 (9%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFE--VMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           G +P   ++N++L  L +    +DA+ L+   V + + P P   ++ +     C+     
Sbjct: 134 GVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVP-PTTFTFGVAARALCRLG--- 189

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                       R +    LL+ M   GC PD + Y  +I  +  Q    EA  +  EM+
Sbjct: 190 ------------RANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEML 237

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G    ++T++ +++     G      ++ D M+ +GC P   +Y  L+ GL    ++ 
Sbjct: 238 LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQAD 297

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA      ML +  +  V+ +N         G+     EL + M   G
Sbjct: 298 EA----RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKG 341


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 21/345 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           ++ I ++  A A +   A  +F+ +              L+  L  +    +A+ LF  +
Sbjct: 12  SYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P+  TY V++   C+   L EA  +  +MI+ G  PDVV +N +++GL K G+ 
Sbjct: 72  NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC--------------------L 439
            +A+ LF  M+  G +PN RS+  +I   C+Q+     C                    L
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGIL 191

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     +++  Y L + M + G  P  +TYN +I  M +    DEA+ ++K M   G 
Sbjct: 192 IDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P+  T+N+++ ++ + G  +   ++   M   G  PD  +Y+ LI GL S  R  +A  
Sbjct: 252 RPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            LE+M+++  K  V+  N     L +AGR     E+   M  SG+
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 184/386 (47%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++  Y S++  L  A  F+    +  +M  +G   S  T+ + ++A       ++A
Sbjct: 40  GVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEA 99

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             + + M +      V T N +++ L +S   +EA LLF++++    TPN  ++  ++ G
Sbjct: 100 CDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILG 159

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + +A +V++EM  +   PD  ++ I+++GL K GK ++A KLF  M   G +P+
Sbjct: 160 LCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPS 219

Query: 418 VRSYTIMIW--------------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y ++I                     K C+ +   +  LI     R +MD  + LLK
Sbjct: 220 AVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLK 279

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M + G  PD +TY+ LI  +      D+A  + ++MV+   KPT+ T N ++    + G
Sbjct: 280 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAG 339

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +  R+V D M+  G  PD  +Y  L+ G     ++  A + L +M+ +G+   V+ Y 
Sbjct: 340 RIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 399

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              + L +A R      +  +M+ SG
Sbjct: 400 ALVSGLCKANRLPEACGVFAQMKSSG 425



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 167/371 (45%), Gaps = 22/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G   +  TYN ++    +    E    ++++M E G +  + T+   M+    +   ++A
Sbjct: 75  GCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEA 134

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F  M +        + N ++  L  +SK+ +  Q+  +       P+  +Y +L+ G
Sbjct: 135 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDG 194

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +   L EA +++  M+D G  P  V +N+++ G+       +A++LF+ M++KG  P+
Sbjct: 195 LAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++ I+I   CK+                    +   Y+ LI+G  +  R+D    LL+
Sbjct: 255 RFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M +R C P  +T N LI  +       EA  +   MV SG  P + TYN ++  + + G
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E  R++  +M+ RG  P+  +YT L+ GL   +R  EA     +M   G    +  Y 
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 578 KFAADLSRAGR 588
                   AG+
Sbjct: 435 ALILGFCSAGQ 445



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 19/323 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           +S +Y  ++  L +A +      +   M + G+  S  T+ + ++    A    +A+ +F
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELF 243

Query: 303 ELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M     +    T N L++ +  R K+ +  +LL         P++ TY+ L+ G C +
Sbjct: 244 KSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI 303

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  +  +M+ +  KP VV  N ++ GL K G+  +A ++ + M + G SP+V +Y
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 363

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
             ++   C+           G   R R     +LL +M  RG  P+ +TY AL+  L K 
Sbjct: 364 NTLVHGHCR----------AGQTERAR-----ELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            ++P EA  ++ +M  SG  P + TY  ++  +   G  + G K++ EM+  G  PD   
Sbjct: 409 NRLP-EACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVV 467

Query: 541 YTVLIGGLISQDRSGEAYKYLEE 563
           Y  L   L    RS  A + L E
Sbjct: 468 YGTLAAELCKSGRSARALEILRE 490



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 15/230 (6%)

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M ++   PD  ++ I+++GL K GK +DA  LF+ +   G +P+  +YT +I   C  N+
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                           D   +L  +M  RGCPP  +TYN +I     + M +EA  + K+
Sbjct: 61  ---------------FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKK 105

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M+  G  P + TYN +M    ++G  E    +++EM R GC P+  S+  +I GL  Q +
Sbjct: 106 MIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 165

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +A +   EM  + +      Y      L++AG+     +L ++M  SG
Sbjct: 166 IDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSG 215



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P+  +Y +L+ G  +   L +A  ++ +++  G  P  VA+  ++ GL       DA +
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           LF  M  +G  P+  +Y ++I   CK+      C               DL+K+M E G 
Sbjct: 67  LFADMNRRGCPPSPVTYNVIIDASCKRGMLEEAC---------------DLIKKMIEDGH 111

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYN ++  +      +EA+ ++ EM R G  P   ++N I+    Q    +   +
Sbjct: 112 VPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQ 171

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V+ EM  R   PD  SY +LI GL    +  EAYK    ML+ G+    + YN     + 
Sbjct: 172 VFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMC 231

Query: 585 RAGRSYVLD---ELAQKMRFSG 603
            A   Y LD   EL + MR  G
Sbjct: 232 LA---YTLDEALELFKSMRSKG 250


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 175/390 (44%), Gaps = 26/390 (6%)

Query: 238 KPGFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           + G   N  TYNS++S L   GR  + E ++ +++   ++       +   ++ F  +  
Sbjct: 315 RKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMK--NQRIFPDNVVYTTLISGFGKSGN 372

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
                 +F+ M + K      T   ++  L ++    EA+ LF ++  +   P+  TYT 
Sbjct: 373 VSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTA 432

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G+C+   + EA  + N+M++KG  P+VV +  +++GL K G+   A +L   M  KG
Sbjct: 433 LIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG 492

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
             PNV +Y  +I   CK                     +   YT ++  +     M   +
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +LL+ M ++G  P  +T+N L+    +  M ++  R+ K M+  G  P   T+N +MK Y
Sbjct: 553 ELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQY 612

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
               N     +++  M  +G  PD N+Y +LI G        EA+   +EM+EKG     
Sbjct: 613 CIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTA 672

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             YN       +  +     +L ++MR  G
Sbjct: 673 ASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 156/356 (43%), Gaps = 40/356 (11%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            F +       A    +A  +F+ +  Y     VD+ N  L  L  S         FD +
Sbjct: 183 VFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNS---------FDGI 233

Query: 341 KHRFTP-----------NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           +  F             N  +Y ++L   C++  + EA  +  +M  +G  PDVV+++++
Sbjct: 234 RTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVI 293

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           ++G  ++ +    +KL E ++ KG  PN  +Y  +I   CK                   
Sbjct: 294 VDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRI 353

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             +  VYT LI+GFG    + + Y L  EM+ +   PD +TY ++I  +       EA +
Sbjct: 354 FPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARK 413

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++ EM+  G KP   TY  ++  Y + G  +    + ++M+ +G  P+  +YT L+ GL 
Sbjct: 414 LFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLC 473

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
                  A + L EM EKG++  V  YN     L + G      +L ++M  +G F
Sbjct: 474 KCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFF 529



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 160/356 (44%), Gaps = 22/356 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            Y +++S  G++        + +EM  K ++    T+   ++    A +  +A  +F  M
Sbjct: 359 VYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEM 418

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                K    T   L++   ++   KEA  L +++  +  TPN+ TYT L+ G C+   +
Sbjct: 419 LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEV 478

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  + +EM +KG +P+V  +N ++ GL K+G    A+KL E M   G  P+  +YT +
Sbjct: 479 DIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTI 538

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  +CK                         +  L+ GF     ++    L+K M ++G 
Sbjct: 539 MDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGI 598

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+  T+N+L+K   I+      + IYK M   G  P  +TYN+++K + +  N +    
Sbjct: 599 MPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWF 658

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           +  EM+ +G      SY  LI G   + +  EA K  EEM   G  A    Y+ F 
Sbjct: 659 LHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 22/315 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY +++    +A + +   S+  +M EKGL  ++ T+   ++      E   A
Sbjct: 422 GLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIA 481

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             +   M++   +  V T N L+  L +    ++A  L +++    F P+  TYT ++  
Sbjct: 482 NELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDA 541

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  + +A  +   M+DKG +P +V  N+++ G    G   D  +L + M  KG  PN
Sbjct: 542 YCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPN 601

Query: 418 VRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLK 457
             ++  ++ ++C +N                       Y  LI G    R M   + L K
Sbjct: 602 ATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHK 661

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM E+G      +YN+LIK    +K  +EA ++++EM   GF      Y++ +   ++ G
Sbjct: 662 EMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEG 721

Query: 518 NYEMGRKVWDEMIRR 532
           N+E   ++ DE I +
Sbjct: 722 NWENTLELCDEAIEK 736


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 173/386 (44%), Gaps = 59/386 (15%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAV 299
           FAHN  TY +M+  L +AR FE M +++ ++ +  +   E  F   +  +  A   K A+
Sbjct: 131 FAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAI 190

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---------------- 343
             F  +  +  +  V + N LL  L ++K      L+F   + +                
Sbjct: 191 RTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKA 250

Query: 344 ---------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                                F PN+ TYT +LGG+    +++ A RV+ E++D+G+ PD
Sbjct: 251 LCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPD 310

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
              + I+++G  K G+  DA+K+ + M+     PN  +Y ++I  +CK+           
Sbjct: 311 PTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLD 370

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    ++A+   +I       ++++  +L K++ ++ C PD    + LI  +  + 
Sbjct: 371 DMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEG 430

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              EA +++ E    G  P+  TYN ++    + G      ++WD M+ +GC P+  +Y 
Sbjct: 431 KVWEARKLFDEF-EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYN 489

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKG 568
           +LI G      + E  + +EEML+ G
Sbjct: 490 MLIKGFCKVGNAREGIRVMEEMLDNG 515



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           EA+ LFD+ +    P+  TY  L+ G C    L EA R+W+ M++KG  P+   +N++++
Sbjct: 434 EARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIK 493

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           G  K+G   + I++ E M   G  PN  +Y I
Sbjct: 494 GFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 184/384 (47%), Gaps = 43/384 (11%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML--EEMGEKGLLSMET--FK 283
           A +FF WA +  G+ H  ++Y SM+ ILGR R   T  + L   E   +G++ +E   F 
Sbjct: 95  ALQFFNWAQEM-GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFN 153

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL---GRSKLPKEAQLLFDKL 340
             M  F  A   ++++ +F +M  +     V T N LL  L   GR+ + K+   ++D++
Sbjct: 154 SLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKK---VYDEM 210

Query: 341 KHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
              +  TP+  T+ +L+ G+C    + +  R++N++   G +PDVV +N +++GL + GK
Sbjct: 211 LSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK 270

Query: 399 RSDAIKLFEVMKAKGP--SPNVRSYTIMIWKFC--------------------KQNAAVY 436
            + A  + + M  K    +PNV +YT +I  +C                    K N   Y
Sbjct: 271 VTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITY 330

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
             LI G    R+ + + D+L+     G   PD  T+N L+         D+A+++++ M 
Sbjct: 331 NTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMS 390

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-------GCCPDDNSYTVLIGGL 548
               +P   TY+ +++S  Q G+YE    + D+++ R       GC P   +Y  +   L
Sbjct: 391 ELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYL 450

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAP 572
               ++ +A K   +++ +G + P
Sbjct: 451 CETGKTKKAEKAFRQLMRRGTQDP 474



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 172/393 (43%), Gaps = 34/393 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF--KIAMNAFAAAKERKK 297
           G + +  T+NS+++IL +  +      + +EM     ++ +TF   I +  F        
Sbjct: 179 GVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDD 238

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVL 354
              IF  ++++  +  V T N L++ L R+     A  +   +  +     PN+ TYT L
Sbjct: 239 GFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTL 298

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C  + + +A  V+ EM+++G K + + +N +++GL +  K      + E     G 
Sbjct: 299 IRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGT 358

Query: 415 -SPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVY 453
            SP+  ++  ++   C                    + ++A Y+ L+         +   
Sbjct: 359 FSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAE 418

Query: 454 DLLKEMEER-------GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           DLL ++ ER       GC P    YN + K +       +A + +++++R G +    +Y
Sbjct: 419 DLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDP-PSY 477

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++  + + G +E G ++   M+R+   PD  +Y  LI GL+  D+   A + LE+ML 
Sbjct: 478 KTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLR 537

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
              +     ++   A L   GR+     L Q M
Sbjct: 538 SSHRPNSSTFHSILAKLLEQGRTSESASLIQLM 570



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 18/222 (8%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N ++    + G   ++IK+F +MK+ G SP+V                 +  L+T    R
Sbjct: 153 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSV---------------VTFNSLLTILLKR 197

Query: 447 RRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            R ++   +  EM    G  PD  T+N LI+   +  M D+  RI+ ++ R G +P + T
Sbjct: 198 GRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVT 257

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGC--CPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           YN ++    + G   +   V   M ++     P+  +YT LI G  ++    +A    EE
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           M+ +G+KA  + YN     L  A +   + ++ +     G F
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTF 359



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 150/345 (43%), Gaps = 46/345 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFE 303
           TYN+++  L RA +     ++++ MG+K +    ++ T+   +  + A +E +KA+A+FE
Sbjct: 257 TYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFE 316

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH---------RFTPNLTTYTVL 354
            M     KA   T N L++ L  ++        F+K+K           F+P+  T+  L
Sbjct: 317 EMVNQGLKANNITYNTLIKGLCEARK-------FEKIKDILEGTAGDGTFSPDTCTFNTL 369

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE------- 407
           +   C   NL +A +V+  M +   +PD   ++ ++  L + G    A  L +       
Sbjct: 370 MHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKI 429

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC--P 465
           ++   G  P V +Y  +    C+             G  ++ +  +   +++  RG   P
Sbjct: 430 LLSGDGCKPLVAAYNPIFKYLCET------------GKTKKAEKAF---RQLMRRGTQDP 474

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P   +Y  LI     +   +    +   M+R  F P   TY  ++          +  + 
Sbjct: 475 P---SYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQS 531

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            ++M+R    P+ +++  ++  L+ Q R+ E+   ++ ML+K ++
Sbjct: 532 LEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIR 576



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 148/381 (38%), Gaps = 82/381 (21%)

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFD----- 338
            +      ++  KA+  F    +  +     +   +LE LGR++ L      LF      
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141

Query: 339 ----KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
               KL+ RF      +  L+  + R     E+ +V+  M   G  P VV  N +L  LL
Sbjct: 142 RGIVKLEARF------FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILL 195

Query: 395 KIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKF--------------------CKQNA 433
           K G+ + A K++ E++   G +P+  ++ I+I  F                    C+ + 
Sbjct: 196 KRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDV 255

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIY 491
             Y  L+ G     ++ + Y+++K M ++     P+ +TY  LI+    ++  ++A+ ++
Sbjct: 256 VTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVF 315

Query: 492 KEMVRSG------------------------------------FKPTIHTYNMIMKSYFQ 515
           +EMV  G                                    F P   T+N +M  +  
Sbjct: 316 EEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCH 375

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-------G 568
            GN +   KV++ M      PD  +Y+ L+  L       +A   L+++LE+       G
Sbjct: 376 AGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDG 435

Query: 569 MKAPVLDYNKFAADLSRAGRS 589
            K  V  YN     L   G++
Sbjct: 436 CKPLVAAYNPIFKYLCETGKT 456



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERG---CPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
           Y  ++   G  R ++   + L  +E+R       +   +N+L++      +  E+++++ 
Sbjct: 114 YFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFT 173

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQ 551
            M   G  P++ T+N ++    + G   M +KV+DEM+   G  PD  ++ +LI G    
Sbjct: 174 IMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMN 233

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
               + ++   ++   G +  V+ YN     L RAG+  V   + + M
Sbjct: 234 GMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGM 281


>gi|242073718|ref|XP_002446795.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
 gi|241937978|gb|EES11123.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
          Length = 468

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 195/432 (45%), Gaps = 31/432 (7%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           +EA L  CGI  +  +   VL+     +RP  A RFF WAG     +H +  +N ++ IL
Sbjct: 36  VEAALSACGIGPTAEVAELVLKSCECYKRPKSAVRFFRWAG--LSLSHTAYAWNLLVDIL 93

Query: 256 GRARQFETMVSMLEEMGEKG---LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
           G+A  FE M   +  M ++G   L+S+ TF     ++ A+   K A+A  ++M++Y  K 
Sbjct: 94  GKAAMFEPMWDAIRSMHQEGGGRLVSVATFASVFASYCASGNLKDAIAALDVMDRYGLKP 153

Query: 313 GVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
               +N LL  + R +   + A  +F++ K    P+  T+ +LL    +  N M A  V+
Sbjct: 154 DAVALNSLLSAICRVEGRAQAAHDVFERTKATIPPDADTFAILLEACEKEGNAMRAKSVF 213

Query: 372 NEMIDK-GF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT------- 422
            EM+ + G+   +V A++  L  L++ G   +A K  +VM++KG  P ++ +        
Sbjct: 214 GEMVVRVGWDAANVPAYDSFLSTLVRGGLFDEAFKFLQVMRSKGCLPGIKFFATAVDLVV 273

Query: 423 --------IMIWKFCKQNA------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
                   + IW      A      ++Y  +I  + N   MD    +L EM   G   + 
Sbjct: 274 LKRDYPNAVAIWNLMVSEAGLVPNFSMYNAMIGLYCNAGAMDYALGMLDEMPLNGVFANS 333

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN +++         EA R   EM ++   PT       +  +F+  N      VW  
Sbjct: 334 VTYNTILEGFIKHCKAREAERFLTEMSKNEQLPTASNCAAAISLFFKEFNPSAAIDVWRC 393

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++     P ++S   LI GL+   R  E  +  +EM++  ++      +      ++A R
Sbjct: 394 IVEHNITPAEDSAKELIAGLLDFGRLTEVERRADEMIDMRVELSRSTMDNMKRAFAKAQR 453

Query: 589 SYVLDELAQKMR 600
               D +A++++
Sbjct: 454 HQSYDRIARRLK 465


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 164/354 (46%), Gaps = 22/354 (6%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           G A +  TYN+++      GRA +   + ++L+EM E G+   E TF + +N +      
Sbjct: 215 GLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNT 274

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             AV +FE M +    A V T + L+  L      +E   L D++K     PNL T   +
Sbjct: 275 AAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSV 334

Query: 355 LGGWCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L G+C+ K +M     W + M  K  KP+VV + I+++G  ++ K  DA+ + E M  KG
Sbjct: 335 LNGFCK-KGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKG 393

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             PN R               +Y CLI GF        V  LL EM  +G   D +TYN 
Sbjct: 394 VRPNAR---------------IYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNV 438

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  + ++    +AV++  EM+  G +P   TYN I+  Y + GN +   ++   M +  
Sbjct: 439 LIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGK 498

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
              +  +Y V I  L    +  E  + L EMLEKG+    + Y+     +   G
Sbjct: 499 KRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKG 552



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 39/330 (11%)

Query: 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEA 333
            L++ E   +A  AF AA  R+ +  +F             T N ++  L ++ +L K  
Sbjct: 159 ALVAAERVDLAERAFKAALRRRVSPDLF-------------TFNIVISGLCKTGQLRKAG 205

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWC---RVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
            +  D       P++ TY  ++ G+C   R   +     +  EM++ G  P+ V  N+++
Sbjct: 206 DVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLV 265

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------- 431
            G  K    + A+++FE MK +G + +V +Y+ ++W  C +                   
Sbjct: 266 NGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLV 325

Query: 432 -NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVR 489
            N A    ++ GF  +  M      +  ME++   P+ +TY  L+    ++ KM D A+ 
Sbjct: 326 PNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKD-ALA 384

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           + + M   G +P    YN ++  + + G++     + DEM  +G   D  +Y VLIG L 
Sbjct: 385 VKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALC 444

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            +    +A K L+EML  G++   L YN  
Sbjct: 445 VKGEVRKAVKLLDEMLMVGLEPVHLTYNTI 474



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 186/432 (43%), Gaps = 47/432 (10%)

Query: 210 SHNLVVDVLE-RFRHARRP--AFRFFCWAGDK-PGFAHNSRTYNSMMSILGRARQFETMV 265
           S  L+ D+L      A +P  ++  F  AGD  P    ++ + N ++S L  A + +   
Sbjct: 111 SSPLIADLLVLALASASQPLASYEAFLLAGDAHPRHRPSAFSVNRLLSALVAAERVD--- 167

Query: 266 SMLEEMGEKGLL------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
             L E   K  L       + TF I ++      + +KA  + + +  +     V T N 
Sbjct: 168 --LAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNT 225

Query: 320 LLENL---GRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           +++     GR+ ++     LL + ++   +PN  T+ VL+ G+C+  N   A RV+ EM 
Sbjct: 226 IIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMK 285

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---- 431
            +G    VV ++ ++ GL   GK  + +KL + MK  G  PN+ +   ++  FCK+    
Sbjct: 286 QQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMT 345

Query: 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLL---KEMEERGCPPDGLTYN 472
                           N   YT L+ G+   RR+D + D L   + M  +G  P+   YN
Sbjct: 346 DAEGWIDSMEQKNVKPNVVTYTILVDGY---RRLDKMKDALAVKEAMSGKGVRPNARIYN 402

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI              +  EM   G +  I TYN+++ +    G      K+ DEM+  
Sbjct: 403 CLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMV 462

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK-APVLDYNKFAADLSRAGRSYV 591
           G  P   +Y  +I G   +     AY+    M EKG K A V+ YN F   L R G+   
Sbjct: 463 GLEPVHLTYNTIINGYCEKGNIKSAYEIRTRM-EKGKKRANVVTYNVFIKCLCRMGKMEE 521

Query: 592 LDELAQKMRFSG 603
            +EL  +M   G
Sbjct: 522 TNELLNEMLEKG 533



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 22/187 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N+R YN +++   R   + ++  +L+EM  KG+ + + T+ + + A     E +KA
Sbjct: 393 GVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKA 452

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL---GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           V + + M     +    T N ++      G  K   E +   +K K R   N+ TY V +
Sbjct: 453 VKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKR--ANVVTYNVFI 510

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR+  + E   + NEM++KG  P+ V ++ + EG+++                KG +
Sbjct: 511 KCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMME----------------KGYT 554

Query: 416 PNVRSYT 422
           P+VR +T
Sbjct: 555 PDVRGFT 561


>gi|414589415|tpg|DAA39986.1| TPA: empty pericarp 2 [Zea mays]
          Length = 455

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 162/336 (48%), Gaps = 17/336 (5%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           R +  +C+V+ +      ++ A L      L+      VL R R+   P+ RFF +A   
Sbjct: 51  RLVGALCRVLSDFRGPRHDLRAALSGFAPRLTPAAAAAVLRRCRNLPVPSLRFFLFAAAM 110

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           PGF H   +   +   L  AR F  + S+L ++  +  LS + F +   A+A A   + A
Sbjct: 111 PGFTHLPDSLLILAGSLAGARLFPLLRSLLSDL-PRSALSRDLFPLLFRAYARAGLPEDA 169

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M ++ F   V  ++ LL  L  + L + A+  F +   +F  +  TYT+L+ GW
Sbjct: 170 IRAFSSMERFCFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPFQFDLSAKTYTILISGW 229

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPSPN 417
             V + ++A ++++EMI++G +PDV A+N +++ L + G  + A  +L ++ +++G +P+
Sbjct: 230 AVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRGLAPD 289

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y   +   C    A     +               L  M  R   P+  TYNA+I+L
Sbjct: 290 AATYGPFLRSACASKDARAALRV---------------LDRMRARSLTPNVFTYNAVIRL 334

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +      DEA  I  EM   G KP + +YN ++ ++
Sbjct: 335 LCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTH 370



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +A  YT LI+G+           L  EM ERG  PD   YNALI  +        A    
Sbjct: 218 SAKTYTILISGWAVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQL 277

Query: 492 KEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           K+M RS G  P   TY   ++S   + +     +V D M  R   P+  +Y  +I  L  
Sbjct: 278 KDMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCE 337

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                EAY  L EM   G K  V  YN
Sbjct: 338 LGEVDEAYNILNEMATYGEKPDVWSYN 364



 Score = 45.4 bits (106), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           +P++A+R +  M R  F PT+   + ++ +    G  E     + E   +       +YT
Sbjct: 165 LPEDAIRAFSSMERFCFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPFQFDL-SAKTYT 223

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           +LI G        +A K  +EM+E+G++  V  YN     L R G   +  E  + M+ S
Sbjct: 224 ILISGWAVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRS 283


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 181/415 (43%), Gaps = 52/415 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G   N+ TYN++++IL   R+ +    +L  MG  GL + + T+   +  +    + K
Sbjct: 553 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPK 612

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA+ +   M +    A + T N +++    S     A  + D ++     P+  +YT L+
Sbjct: 613 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 672

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C++  +  A  ++NEM+D G  P+ V +  +++G  K  K   A  L E MK  G  
Sbjct: 673 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 732

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           PNV++Y ++I    KQN                       YT +I G        +  ++
Sbjct: 733 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M E+GC P+ LTY++LI+ +  +   +EA  ++ E+ R G  P   TY  ++++Y  
Sbjct: 793 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL--------------------------- 548
           +G  E        MI+ GC P   +Y VLI GL                           
Sbjct: 853 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 912

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             QD        L E L+ G+   V   N   ++LS AGR +  +EL   M   G
Sbjct: 913 TDQDAVSVMSAKLAE-LDPGLSVQV--QNALVSNLSTAGRWFEANELLGSMISQG 964



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 157/354 (44%), Gaps = 18/354 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+R F    +K G   N  TY +++S L  +   +  + +   M   G+  +  T+   +
Sbjct: 509 AWRLFVDMKNK-GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 567

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           N     +  K A  +  LM +      + T N +++       PK+A L+ + +  R  +
Sbjct: 568 NILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 627

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            NL TY  ++ G+C   N   A R+ + M D G KPD  ++  ++ G  KI K   A  L
Sbjct: 628 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 687

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G  PN  +YT +I  +CK                 ++D    LL+ M+  GC 
Sbjct: 688 FNEMVDDGLCPNEVTYTALIDGYCKD---------------EKLDTATSLLEHMKRSGCR 732

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  TYN LI  +  Q     A  + K M+  G  P + TY  ++    + G+  +  ++
Sbjct: 733 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +++MI +GC P+  +Y+ LI  L  + +  EA     E+   G+    + Y K 
Sbjct: 793 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 846



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 127/341 (37%), Gaps = 55/341 (16%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +L +  +  L    Q+     K    PN  TY+ L+ G C    + EA  +  EMI  G 
Sbjct: 427 ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 486

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
            P        +  L  +G   DA +LF  MK KG  PNV +YT +I   C          
Sbjct: 487 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 546

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI      RR+   + +L  M   G   + +TYN +IK   
Sbjct: 547 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYC 606

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD------------ 527
           I   P +A+ +   M++ G    + TYN I+K Y  +GN     ++ D            
Sbjct: 607 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 666

Query: 528 -----------------------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                                  EM+  G CP++ +YT LI G    ++   A   LE M
Sbjct: 667 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 726

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
              G +  V  YN     L++       +EL + M   G F
Sbjct: 727 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 767



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 168/439 (38%), Gaps = 81/439 (18%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
            +Y  ++    +  + E+   +  EM + GL   E T+   ++ +   ++   A ++ E M
Sbjct: 667  SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 726

Query: 306  NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
             +   +  V T N L+  L + +      +L    ++    PN+ TYT ++ G C+  + 
Sbjct: 727  KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 786

Query: 365  MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
              A  ++N+MI++G  P+++ ++ ++  L + GK  +A  LF  ++  G  P+  +Y  M
Sbjct: 787  SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 846

Query: 425  IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK----- 479
            I  +          +++G     +++  ++ L  M + GC P   TY  LIK +K     
Sbjct: 847  IEAY----------IMSG-----KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 891

Query: 480  ----IQKMPD-------------------------------------------------- 485
                +  +PD                                                  
Sbjct: 892  ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 951

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            EA  +   M+  G  P    YN ++ S  +  N ++   V+  M  +GC    N Y  LI
Sbjct: 952  EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 1011

Query: 546  GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM---RFS 602
              L    R  EA    E ML +      +        L R G   +  E    M   R+ 
Sbjct: 1012 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 1071

Query: 603  GKFEVSNVLARWAETTKNR 621
              F +  +LAR  E +K R
Sbjct: 1072 PSFHIYTILAR--EASKKR 1088



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 122/284 (42%), Gaps = 16/284 (5%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           + ++  +++++   + G+   + LL +L R  +       + + L     PNL  Y  ++
Sbjct: 333 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 392

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  N+ +A  +  ++ +    PD   +  M+ G  +      A+++F  M  +G  
Sbjct: 393 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG-- 450

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C+ N   Y+ LI G  +  R++  +DL++EM   G  P   T    I
Sbjct: 451 -------------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 497

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +      ++A R++ +M   G +P ++TY  ++     +G  ++   ++  M R G  
Sbjct: 498 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 557

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           P+  +Y  LI  L+   R   A+  L  M   G+   ++ YN+ 
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEM 601



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 27/266 (10%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L  Y+ LL    R+         ++ M+ +G +P+++ +N ++  L K G  +DA  + +
Sbjct: 350 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 409

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            +     SP+  +YT MI   C+++                +D    +  +M + GC P+
Sbjct: 410 KVFESEMSPDTFTYTSMILGHCRKH---------------DLDSALQVFNQMAKEGCEPN 454

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TY+ LI  +      +EA  + +EM+  G  PT HT    + +    G YE   +++ 
Sbjct: 455 TVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFV 514

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +M  +GC P+  +YT LI GL        A      M   G+    + YN          
Sbjct: 515 DMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA--------- 565

Query: 588 RSYVLDELAQKMRFSGKFEVSNVLAR 613
              +++ L +  R    F V N++ R
Sbjct: 566 ---LINILVENRRIKYAFVVLNLMGR 588



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 67/171 (39%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI    ++  M      L  + + G       Y+AL+  +    M    +  Y  M+  G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P +  YN ++ +  + GN      +  ++      PD  +YT +I G   +     A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
           +   +M ++G +   + Y+     L  +GR     +L ++M   G    ++
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 491


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 177/386 (45%), Gaps = 25/386 (6%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGL-LSMETFK 283
           R  FR F W+     +    RT   ++   L +   FE    +L+E+    + +S E F 
Sbjct: 75  RLGFRLFIWS--LKSWHLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFS 132

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKH 342
           + + A++ A   +KAV  F LM  +  K  +   N +L  L R +    A  ++++ LK 
Sbjct: 133 VLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKC 192

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
              P++ TY +L+ G C+     +A  +++EM D+G  P+ + ++I+L GL +  K  DA
Sbjct: 193 NLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDA 252

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITG 442
            +LF  M+A G + ++ +Y +++  FCK                         Y CLI G
Sbjct: 253 QRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLING 312

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
               RR +  +   ++M      PD + Y  +I+ +  +    EA+ +  EM   G +P 
Sbjct: 313 LFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPD 372

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              YN ++K +   G  +    +  E+ +  C P++++Y++LI G+       +A    +
Sbjct: 373 TICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFK 432

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
           EM + G    V+ +N     L +A R
Sbjct: 433 EMEKLGCLPSVVTFNSLINGLCKANR 458



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 65/379 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y+ ++S L +A++      +  +M   G    + T+ + +N F  +     A
Sbjct: 228 GILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDA 287

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             + +L+ K     GV    CL+  L R++  +EA + + K L+    P++  YT+++ G
Sbjct: 288 FTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRG 347

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +   + EA  +  EM ++G +PD + +N +++G   +G   +A  L   +      PN
Sbjct: 348 LSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPN 407

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
             +Y+I+I   CK           G  N+ +      + KEME+ GC P  +T+N+LI  
Sbjct: 408 NHTYSILICGMCKN----------GLINKAQ-----HIFKEMEKLGCLPSVVTFNSLING 452

Query: 477 ---------------LMKIQKMPD--------------------------------EAVR 489
                           M+I + P                                 +A +
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  ++V SG  P I TYN+++  + + GN     K++ EM  +G  PD  +Y  LI GL 
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572

Query: 550 SQDRSGEAYKYLEEMLEKG 568
              R+ +A +  E+M++KG
Sbjct: 573 RAGRNEDALEIFEQMVKKG 591



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 156/358 (43%), Gaps = 35/358 (9%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y  M+  L +  +    +++L EM E+GL      +   +  F       +A ++   ++
Sbjct: 341 YTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEIS 400

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K+       T + L+  + ++ L  +AQ +F ++ K    P++ T+  L+ G C+   L 
Sbjct: 401 KHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLE 460

Query: 366 EAGRVWNEM---------------IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           EA  ++ +M                DK F  D+ +  +M+E L + G    A KL   + 
Sbjct: 461 EARLLFYQMEIVRKPSLFLRLSQGTDKVF--DIASLQVMMERLCESGMILKAYKLLMQLV 518

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P++R+Y I+I  FCK            FGN   ++  + L KEM+ +G  PD +T
Sbjct: 519 DSGVLPDIRTYNILINGFCK------------FGN---INGAFKLFKEMQLKGHMPDSVT 563

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  LI  +      ++A+ I+++MV+ G  P   TY  IM    +  N  +   VW + +
Sbjct: 564 YGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYL 623

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           R     +D    V+     +++    A + L EM  K     +  Y  F   L +A R
Sbjct: 624 RDFRGWEDEKVRVVAESFDNEELQ-TAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKR 680



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TY+ ++  + +         + +EM + G L S+ TF   +N    A   ++A  +F
Sbjct: 407 NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLF 466

Query: 303 ---ELMNK----YKFKAGVD------TINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNL 348
              E++ K     +   G D      ++  ++E L  S +  +A +LL   +     P++
Sbjct: 467 YQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDI 526

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TY +L+ G+C+  N+  A +++ EM  KG  PD V +  +++GL + G+  DA+++FE 
Sbjct: 527 RTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQ 586

Query: 409 MKAKGPSPNVRSY-TIMIWKFCKQN 432
           M  KG  P   +Y TIM W  C++N
Sbjct: 587 MVKKGCVPESSTYKTIMTWS-CREN 610



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 13/222 (5%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR-SYTIMIWKF------CKQNAAVYTCLIT 441
           M +GL  I  R  +  +  V++ +   P+ R  + + IW        C+    V   +I 
Sbjct: 48  MEDGLKVISSRIRSYTITSVLQEQ---PDTRLGFRLFIWSLKSWHLRCR---TVQDLIIG 101

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                   ++ + +L+E++          ++ LI+      M ++AV  +  M     KP
Sbjct: 102 KLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKP 161

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            +  +N+I+    +   + +   V+++M++    PD  +Y +LI GL    ++ +A    
Sbjct: 162 DLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLF 221

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +EM ++G+    + Y+   + L +A + +    L  KMR SG
Sbjct: 222 DEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASG 263


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 184/405 (45%), Gaps = 55/405 (13%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY  ++  L +       + M  EM   G+L  +  +   M+        K+A+  F+ M
Sbjct: 148 TYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 207

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                 A V T N L+  L R+ L KE     + +  R F+P+  T+T+L+ G C+   +
Sbjct: 208 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 267

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA ++   M  KG +PD++ +N ++ GL  +G+  DA KLFE +  +G   NV SY I+
Sbjct: 268 GEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-------KL 477
           I  +CK                +++D  + L +EM  +G  P  +TYN LI       ++
Sbjct: 328 INGYCKD---------------QKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRV 372

Query: 478 MKIQKM----------------------------PDEAVRIYKEMVRSGFKPTIHTYNMI 509
              QK+                             +EA+ +++ + ++  KP I  ++++
Sbjct: 373 RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSIL 432

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    + G  E   K +DE+ + G  PD  +Y +LI GL ++    EA K L +M EKG 
Sbjct: 433 LDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 492

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMR---FSGKFEVSNVL 611
               + +N    +L +    +   +L ++MR   FS    V+++L
Sbjct: 493 LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSML 537



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 144/308 (46%), Gaps = 15/308 (4%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           AV +F+ M +        T   L+  L +++    A  L +K+K     ++ TY +++  
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDS 155

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     EA  +++EMI  G  PDVV ++ +++GL + G+  +A++ F+ M+ +G S +
Sbjct: 156 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISAD 215

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V  YT             Y  LI G         V   L  M +RG  PD  T+  LI  
Sbjct: 216 V--YT-------------YNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 260

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    EA +I + M   G +P I TYN +M      G  E   K+++ +  RG   +
Sbjct: 261 LCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLN 320

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             SY +LI G     +  EA++  EEM  KG+K   + YN     L ++GR     +L  
Sbjct: 321 VFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFV 380

Query: 598 KMRFSGKF 605
           +M+  G+F
Sbjct: 381 EMQTCGQF 388



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 24/354 (6%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           ++D L RF   +  A  FF     + G + +  TYNS++  L RA  ++ +   L  M +
Sbjct: 187 LMDGLCRFGRLKE-ALEFFKEMEGR-GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 274 KGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           +G      TF I ++      +  +A  I ELM+    +  + T N L+  L      ++
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A  LF+ L  R    N+ +Y +L+ G+C+ + + EA R++ EM  KG KP  V +N ++ 
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIG 364

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
            L + G+   A KLF  M+  G    + +Y +++   CK                     
Sbjct: 365 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKP 424

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N  V++ L+ G     +++  +    E+ + G  PD + YN LI  +  + M  EAV++ 
Sbjct: 425 NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLL 484

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +M   G  P   T+N+I+++  +        ++ +EM  R   PD+   ++L+
Sbjct: 485 WQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 21/234 (8%)

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--- 431
           + +GF+PD V    +++G+       DA++LF+ M  KG   + ++Y I+I   CK    
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                           +   Y  +I             D+  EM   G  PD + Y++L+
Sbjct: 129 GLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             L +  ++  EA+  +KEM   G    ++TYN ++    + G ++      + M+ RG 
Sbjct: 189 DGLCRFGRL-KEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 247

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  ++T+LI GL  + + GEA + LE M  KG +  +L YN     L   G+
Sbjct: 248 SPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ 301



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 52/268 (19%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++M+ L    Q E    + E + ++G+ L++ ++ I +N +   ++  +A  +FE M
Sbjct: 288 TYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEM 347

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL------------------------- 340
                K    T N L+  L +S   + AQ LF ++                         
Sbjct: 348 RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHL 407

Query: 341 -----------KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
                      K    PN+  +++LL G CR   L EA + ++E+   G +PD +A+NI+
Sbjct: 408 EEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNIL 467

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           + GL   G  S+A+KL   M+ KG  P+  ++ ++I    K+N                +
Sbjct: 468 INGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKEN---------------EI 512

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKL 477
                LL+EM  R   PD    + L+ L
Sbjct: 513 HEAIQLLEEMRNRNFSPDEAVTSMLLCL 540



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           ++ GF+P   T   ++K  +         +++DEM  +G   D  +Y +LI GL    ++
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           G A K L E ++   K  V  Y      L + G +
Sbjct: 129 GLAIK-LHEKMKGNCKGDVFTYGMIIDSLCKDGMT 162


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 22/328 (6%)

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGW 358
           A+   M +Y F     T   ++ +L      K+    F ++    TP N+  YT  + G 
Sbjct: 94  ALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGL 153

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPN 417
           C+ + + +A  V  EM+ +G KP+V  H  +++GL KIG    A +LF +++K+    PN
Sbjct: 154 CKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPN 213

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT+MI  +C++                    N   YT LI G       D  ++L+ 
Sbjct: 214 VHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMN 273

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M++ G  P+  TYNA+I     +    EA ++ +     G K    TY +++  + + G
Sbjct: 274 KMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQG 333

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +      ++D M+  GCCPD  +YT LI     Q +  E+ K+ ++ L  G+      Y 
Sbjct: 334 HITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYT 393

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF 605
              A   + GRS +   + ++M  +G F
Sbjct: 394 SMIAGYCKVGRSTLALRVFERMVQNGCF 421



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 156/342 (45%), Gaps = 22/342 (6%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           FR     G  P    N   Y + +  L + R  +    +LEEM  +GL  ++ T    ++
Sbjct: 131 FRRMLETGTPP----NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLID 186

Query: 288 AFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFT 345
                   ++A  +F +L+    +K  V T   ++    R  KL +   LL   ++    
Sbjct: 187 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLK 246

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  TYT L+GG C+  +   A  + N+M  +GF P++  +N +++G  K GK  +A K+
Sbjct: 247 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV 306

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             +  ++G   +  +YTI+I + CKQ    Y                 DL   M E GC 
Sbjct: 307 LRMATSQGLKFDKITYTILITEHCKQGHITYA---------------LDLFDRMVENGCC 351

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD   Y +LI     Q+  +E+ + + + +  G  PT  TY  ++  Y + G   +  +V
Sbjct: 352 PDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRV 411

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           ++ M++ GC  D  +Y  LI GL  + R  EA    E ML+K
Sbjct: 412 FERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDK 453



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 159/417 (38%), Gaps = 61/417 (14%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           +H  ++D L +     R AFR F        +  N  TY  M+    R  +      +L 
Sbjct: 180 THTTLIDGLCKIGWTER-AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLV 238

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M E+GL  +  T+   +          +A   FELMNK K                   
Sbjct: 239 RMVEQGLKPNTNTYTTLIGGHCKGGSFDRA---FELMNKMK------------------- 276

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
                       +  F PN+ TY  ++ G+C+   + EA +V      +G K D + + I
Sbjct: 277 ------------QEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 324

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           ++    K G  + A+ LF+ M   G  P++ +YT +I  +C+Q                 
Sbjct: 325 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 384

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                  YT +I G+    R  +   + + M + GC  D +TY ALI  +  +   +EA 
Sbjct: 385 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 444

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +Y+ M+     P   T   +   Y +     +   V D + +R      ++  V++  L
Sbjct: 445 ALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKR---QQVHTVDVVVRKL 501

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            +      A  +L+++L++        Y  F        R  +  E+++K  FS K 
Sbjct: 502 SALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCYENNRYALASEMSEK--FSKKI 556



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  P    + AL+ +   +   +E   +   M R GF     T  ++++S  + G 
Sbjct: 64  MTRAGVSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGR 123

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++   + +  M+  G  P+  +YT  I GL  +    +A+  LEEM+ +G+K  V  +  
Sbjct: 124 FKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 183

Query: 579 FAADLSRAG 587
               L + G
Sbjct: 184 LIDGLCKIG 192



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 16/136 (11%)

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           ++P EA  +  EM   G    + T N +++   +TG++   RKV+D M R G  P +  +
Sbjct: 18  RLP-EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGF 76

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
             L+     + +  E    L  M   G              L  A  + V+  L +K RF
Sbjct: 77  GALVVVCCREGKVEEVDALLAAMWRYGF------------SLDNATCTVVVRSLCEKGRF 124

Query: 602 SGKFEVSNVLARWAET 617
               +VS    R  ET
Sbjct: 125 K---DVSEFFRRMLET 137


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 185/386 (47%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++  Y S++  L  A  F+    +  +M  +G   S  T+ + ++A       ++A
Sbjct: 40  GVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEA 99

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             + + M +      V T N +++ L +S   +EA LLF++++    TPN  ++  ++ G
Sbjct: 100 CDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILG 159

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + +A +V++EM  K   PD  ++ I+++GL K GK ++A KLF+ M   G +P+
Sbjct: 160 LCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPS 219

Query: 418 VRSYTIMIW--------------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y ++I                     K C+ +   +  LI     R ++D  + LLK
Sbjct: 220 AVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLK 279

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M + G  PD +TY+ LI  +      D+A  + ++MV+   KPT+ T N ++    + G
Sbjct: 280 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAG 339

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +  R+V D M+  G  PD  +Y  L+ G     ++  A + L +M+ +G+   V+ Y 
Sbjct: 340 RIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 399

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              + L +A R      +  +M+ SG
Sbjct: 400 ALVSGLCKANRLPEACGVFAQMKSSG 425



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 159/345 (46%), Gaps = 21/345 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           ++ I ++  A A +   A  +F+ +              L+  L  +    +A+ LF  +
Sbjct: 12  SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P+  TY V++   C+   L EA  +  +MI+ G  PDVV +N +++GL K  + 
Sbjct: 72  NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 131

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC--------------------L 439
            +A+ LF  M+  G +PN RS+  +I   C+Q+     C                    L
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGIL 191

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     +++  Y L + M + G  P  +TYN +I  M +    DEA+ ++K M   G 
Sbjct: 192 IDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P+  T+N+++ ++ + G  +   ++   M   G  PD  +Y+ LI GL S  R  +A  
Sbjct: 252 RPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            LE+M+++  K  V+  N     L +AGR     E+   M  SG+
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 167/371 (45%), Gaps = 22/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G   +  TYN M+    +    E    ++++M E G +  + T+   M+    +   ++A
Sbjct: 75  GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA 134

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F  M +        + N ++  L  +SK+ +  Q+  +       P+  +Y +L+ G
Sbjct: 135 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDG 194

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +   L EA +++  M+D G  P  V +N+++ G+       +A++LF+ M++KG  P+
Sbjct: 195 LAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++ I+I   CK+                    +   Y+ LI+G  +  R+D    LL+
Sbjct: 255 RFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M +R C P  +T N LI  +       EA  +   MV SG  P + TYN ++  + + G
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E  R++  +M+ RG  P+  +YT L+ GL   +R  EA     +M   G    +  Y 
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 578 KFAADLSRAGR 588
                   AG+
Sbjct: 435 ALILGFCSAGQ 445



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 152/323 (47%), Gaps = 19/323 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           +S +Y  ++  L +A +      + + M + G+  S  T+ + ++    A    +A+ +F
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELF 243

Query: 303 ELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M     +    T N L++ +  R KL +  +LL         P++ TY+ L+ G C +
Sbjct: 244 KSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI 303

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + +A  +  +M+ +  KP VV  N ++ GL K G+  +A ++ + M + G SP+V +Y
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 363

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
             ++   C+           G   R R     +LL +M  RG  P+ +TY AL+  L K 
Sbjct: 364 NTLVHGHCR----------AGQTERAR-----ELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            ++P EA  ++ +M  SG  P + TY  ++  +   G  + G K++ EM+  G  PD   
Sbjct: 409 NRLP-EACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVV 467

Query: 541 YTVLIGGLISQDRSGEAYKYLEE 563
           Y  L   L    RS  A + L E
Sbjct: 468 YGTLAAELCKSGRSARALEILRE 490



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 15/230 (6%)

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M ++   PD  ++ I+++GL K GK +DA  LF+ +   G +P+  +YT +I   C  N+
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                           D   +L  +M  RGCPP  +TYN +I     + M +EA  + K+
Sbjct: 61  ---------------FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 105

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M+  G  P + TYN +M    ++   E    +++EM R GC P+  S+  +I GL  Q +
Sbjct: 106 MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 165

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +A +   EM  K +      Y      L++AG+     +L Q+M  SG
Sbjct: 166 IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSG 215



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P+  +Y +L+ G  +   L +A  ++ +++  G  P  VA+  ++ GL       DA +
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           LF  M  +G  P+  +Y +MI   CK+      C               DL+K+M E G 
Sbjct: 67  LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEAC---------------DLIKKMIEDGH 111

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYN ++  +      +EA+ ++ EM R G  P   ++N I+    Q    +   +
Sbjct: 112 VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQ 171

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V+ EM  +   PD  SY +LI GL    +  EAYK  + ML+ G+    + YN     + 
Sbjct: 172 VFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMC 231

Query: 585 RAGRSYVLD---ELAQKMRFSG 603
            A   Y LD   EL + MR  G
Sbjct: 232 LA---YTLDEALELFKSMRSKG 250


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 188/405 (46%), Gaps = 28/405 (6%)

Query: 189 DELFSLDRNMEAVLDECGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           D++  L + ME     C  N ++HN+V+  L R       A       G +     +S T
Sbjct: 254 DKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMV---EGMRLSKKASSFT 310

Query: 248 YNSMMSILGRARQFETMVSMLE-EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           YN +++ L  A+ F      L+ EM  +G++ ++ T+   ++    + + + A   F  M
Sbjct: 311 YNPLITGL-LAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEM 369

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +  V T N LL    ++   KEA LLF  L+H    P + TY +L+ G+CR+ +L
Sbjct: 370 RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDL 429

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT-- 422
            EA R+  EM+++G  PDV  + I+++G       + A + F+ M +KG  P+  +Y   
Sbjct: 430 EEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTR 489

Query: 423 ------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                             +M+ +    +   Y  LI G      ++   DL  +M   G 
Sbjct: 490 IRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGL 549

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TY  LI     + +  EA + +K+M+  G  P+  TY + + +Y + GN      
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG 609

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            + +M+  G  P++ +Y VLI  L    R+  AY++  EMLE+G+
Sbjct: 610 WFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGL 654



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 160/352 (45%), Gaps = 22/352 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+M+  L ++ Q E       EM   GL   + T+   +N +  A   K+A+ +F  +
Sbjct: 345 TYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDL 404

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
                   V T N L++   R    +EA+ L +++ +    P++ TYT+L+ G     +L
Sbjct: 405 RHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSL 464

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A   ++EM+ KG +PD  A+N  +   L +G  + A +L EVM  +G S +  +Y I+
Sbjct: 465 AMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNIL 524

Query: 425 IWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   YTCLI     R  +       K+M   G 
Sbjct: 525 IDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGL 584

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P  +TY   I     +     A   +++M+  G +P   TYN+++ +  +TG  ++  +
Sbjct: 585 APSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYR 644

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + EM+ RG  P+  +YT+LI G   +    +A ++  EM + G+    L +
Sbjct: 645 HFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTH 696



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 18/367 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A + +  N ++ +L  A +++ + ++  EM + G+  S+ T+   +++F       K 
Sbjct: 197 GVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKV 256

Query: 299 VAIFELMNKYKFKAGVDTI--NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
             + + M         + +  N ++  L R    +EA  + + ++     +  TY  L+ 
Sbjct: 257 AMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLIT 316

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G      + +A  +  EM ++G  P VV +N M+ GLL+ G+   A   F  M+A G  P
Sbjct: 317 GLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQP 376

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V +Y  ++  +CK  +     L+  FG+ R               G  P  LTYN LI 
Sbjct: 377 DVITYNSLLNGYCKAGSLKEALLL--FGDLRHA-------------GLAPTVLTYNILID 421

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
                   +EA R+ +EMV  G  P + TY ++MK      +  M R+ +DEM+ +G  P
Sbjct: 422 GYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQP 481

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  +Y   I   ++     +A++  E M+ +G+ +  + YN     L + G      +L 
Sbjct: 482 DCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQ 541

Query: 597 QKMRFSG 603
            KM  +G
Sbjct: 542 MKMVHNG 548



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 91/299 (30%)

Query: 370 VWNEMIDKGFKPDV-----------------------------------VAHNIMLEGLL 394
            ++EM   G  PDV                                   V +N +L+  L
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 395 KIGKRSDAIKLFEVMKAKGPS--PNVRSYTIMIWKFC-------------------KQNA 433
           K G+      L + M+ +G    PN  ++ ++I                       K ++
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASS 308

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI--------------KLMK 479
             Y  LITG   +  +    DL  EME  G  P  +TYNA+I              K ++
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE 368

Query: 480 IQKM---PD------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++ M   PD                  EA+ ++ ++  +G  PT+ TYN+++  Y + G+
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            E  R++ +EM+ +GC PD  +YT+L+ G  +      A ++ +EML KG++     YN
Sbjct: 429 LEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYN 487



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 22/238 (9%)

Query: 241 FAHNSRTYNSMMSILGRARQFETM-VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           FA+N+R   + +++   A+ F    V MLE +    +    T+ I ++          A 
Sbjct: 484 FAYNTRI-RAELTLGAIAKAFRLREVMMLEGISSDTV----TYNILIDGLCKTGNLNDAK 538

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGW 358
            +   M     +    T  CL+       L +EA+  F D +     P+  TYTV +  +
Sbjct: 539 DLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAY 598

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR  NL  A   + +M+++G +P+ + +N+++  L + G+   A + F  M  +G  PN 
Sbjct: 599 CRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNK 658

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            +YT++I   CK+            GN       Y    EM + G  PD LT+ AL K
Sbjct: 659 YTYTLLIDGNCKE------------GNWEDAMRFY---FEMHQNGIHPDYLTHKALFK 701



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM   G  PD    N +++++      D+   ++ EM++ G +P+I TYN ++ S+ +
Sbjct: 190 FHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLK 249

Query: 516 TGNYEMGRKVWDEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM-LEKGMKAP 572
            G  +    +  EM  R  GC P+D ++ V+I GL  +    EA + +E M L K  KA 
Sbjct: 250 EGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSK--KAS 307

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              YN     L   G     D+L  +M   G
Sbjct: 308 SFTYNPLITGLLAKGFVKKADDLQLEMENEG 338


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 22/328 (6%)

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGW 358
           A+   M +Y F     T   ++ +L      K+    F ++    TP N+  YT  + G 
Sbjct: 202 ALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGL 261

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPN 417
           C+ + + +A  V  EM+ +G KP+V  H  +++GL KIG    A +LF +++K+    PN
Sbjct: 262 CKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPN 321

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT+MI  +C++                    N   YT LI G       D  ++L+ 
Sbjct: 322 VHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMN 381

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M++ G  P+  TYNA+I     +    EA ++ +     G K    TY +++  + + G
Sbjct: 382 KMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQG 441

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +      ++D M+  GCCPD  +YT LI     Q +  E+ K+ ++ L  G+      Y 
Sbjct: 442 HITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYT 501

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF 605
              A   + GRS +   + ++M  +G F
Sbjct: 502 SMIAGYCKVGRSTLALRVFERMVQNGCF 529



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 156/342 (45%), Gaps = 22/342 (6%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           FR     G  P    N   Y + +  L + R  +    +LEEM  +GL  ++ T    ++
Sbjct: 239 FRRMLETGTPP----NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLID 294

Query: 288 AFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFT 345
                   ++A  +F +L+    +K  V T   ++    R  KL +   LL   ++    
Sbjct: 295 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLK 354

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  TYT L+GG C+  +   A  + N+M  +GF P++  +N +++G  K GK  +A K+
Sbjct: 355 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV 414

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             +  ++G   +  +YTI+I + CKQ    Y                 DL   M E GC 
Sbjct: 415 LRMATSQGLKFDKITYTILITEHCKQGHITYA---------------LDLFDRMVENGCC 459

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD   Y +LI     Q+  +E+ + + + +  G  PT  TY  ++  Y + G   +  +V
Sbjct: 460 PDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRV 519

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           ++ M++ GC  D  +Y  LI GL  + R  EA    E ML+K
Sbjct: 520 FERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDK 561



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 159/417 (38%), Gaps = 61/417 (14%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           +H  ++D L +     R AFR F        +  N  TY  M+    R  +      +L 
Sbjct: 288 THTTLIDGLCKIGWTER-AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLV 346

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M E+GL  +  T+   +          +A   FELMNK K                   
Sbjct: 347 RMVEQGLKPNTNTYTTLIGGHCKGGSFDRA---FELMNKMK------------------- 384

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
                       +  F PN+ TY  ++ G+C+   + EA +V      +G K D + + I
Sbjct: 385 ------------QEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 432

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           ++    K G  + A+ LF+ M   G  P++ +YT +I  +C+Q                 
Sbjct: 433 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 492

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
                  YT +I G+    R  +   + + M + GC  D +TY ALI  +  +   +EA 
Sbjct: 493 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 552

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +Y+ M+     P   T   +   Y +     +   V D + +R      ++  V++  L
Sbjct: 553 ALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKR---QQVHTVDVVVRKL 609

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            +      A  +L+++L++        Y  F        R  +  E+++K  FS K 
Sbjct: 610 SALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCYENNRYALASEMSEK--FSKKI 664



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 16/136 (11%)

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           ++P EA  +  EM   G    + T N +++   +TG++   RKV+D M R G CPD+ S+
Sbjct: 126 RLP-EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSF 184

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
             L+     + +  E    L  M   G              L  A  + V+  L +K RF
Sbjct: 185 RALVVVCCREGKVEEVDALLAAMWRYGF------------SLDNATCTVVVRSLCEKGRF 232

Query: 602 SGKFEVSNVLARWAET 617
               +VS    R  ET
Sbjct: 233 K---DVSEFFRRMLET 245



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  PD  ++ AL+ +   +   +E   +   M R GF     T  ++++S  + G 
Sbjct: 172 MTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGR 231

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++   + +  M+  G  P+  +YT  I GL  +    +A+  LEEM+ +G+K  V  +  
Sbjct: 232 FKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 291

Query: 579 FAADLSRAG 587
               L + G
Sbjct: 292 LIDGLCKIG 300


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 197/458 (43%), Gaps = 96/458 (20%)

Query: 228 AFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-------GEKGLL-- 277
           A + F +AG  +P F+HN  TY+S++  L RAR F  +  +L ++       GE   +  
Sbjct: 77  ALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFINV 136

Query: 278 ---------------------------SMETFKIAMNAFAAAKERKKAVAIFE-LMNKYK 309
                                      S+ +    +NAF   K      A+F+   +KY 
Sbjct: 137 IRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYG 196

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
               V T N L++ L +    + A  + D++      PN+ TYT +LGG+    +++ A 
Sbjct: 197 VLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNAN 256

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           +V+ E+ D+G+ PD   + I++ G  + G+ +DAIKL + M   G  PN  +Y +M+  +
Sbjct: 257 KVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAY 316

Query: 429 CKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           CK+                    ++A+   +I       +++   +L K M ++ C PD 
Sbjct: 317 CKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDN 376

Query: 469 ----------------------------------LTYNALIKLMKIQKMPDEAVRIYKEM 494
                                             LTYN LI  M  +    EA +++ +M
Sbjct: 377 AIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDM 436

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +  G+KP   TYNM++K + + GN + G ++ +EM+   C P+ ++Y +LI  L      
Sbjct: 437 MEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCKMGME 496

Query: 555 GEAYKYLE-EMLEKGMKAPVLD--YNKFAADLSRAGRS 589
           GE  K +   M   G+ +   D   NK   +L R  ++
Sbjct: 497 GEVDKVVSMAMASGGVDSDSWDLFLNKAVGNLDRGSKA 534


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 162/357 (45%), Gaps = 24/357 (6%)

Query: 281 TFKIAMNAFAAAKERKK-AVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           TF I     A ++ R   AV +F  L   ++    +   N LL+ L +S+   +A  L  
Sbjct: 130 TFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVR 189

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
            L+ RFTP++ TY  L  GWCRVK+   A  V   M++ G  P    +NI+L+G  + G+
Sbjct: 190 ALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQ 249

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A   F  MK +G             + CK +   YT ++ G G   +++    +  E
Sbjct: 250 LRHAWDFFLQMKKRGSKD----------ESCKPDVVSYTTMVHGLGVAGQLEKARKVFDE 299

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + GC P   TYNALI+++  +   ++AV ++  M+  G+ P + TY ++++     G 
Sbjct: 300 MAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGK 359

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YN 577
            + G K+ + M   GC P   +Y VLI  L  +    +     E+M +     P  D YN
Sbjct: 360 IDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYN 419

Query: 578 ---------KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRK 625
                    K A D+  A R  ++DE+  +     +F  + VL     T    + RK
Sbjct: 420 IIISAMFMRKRAEDMVLAAR--MVDEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRK 474



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 147/333 (44%), Gaps = 32/333 (9%)

Query: 225 RRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF 282
           RRP  A R F         A +   +NS++  L ++R      S++  + ++    + T+
Sbjct: 143 RRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTY 202

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342
               + +   K+  +A+ +  LM +        T N +L+   R+   + A   F ++K 
Sbjct: 203 NTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKK 262

Query: 343 RFT------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           R +      P++ +YT ++ G      L +A +V++EM  +G  P V  +N +++ + K 
Sbjct: 263 RGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKK 322

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVY 436
           G   DA+ +F+ M  KG  PNV +YT++I   C                          Y
Sbjct: 323 GNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTY 382

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQKMPDE---AVRIYK 492
             LI        M+   DL ++M +   C P+  TYN +I  M ++K  ++   A R+  
Sbjct: 383 NVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVD 442

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           EMV  G+ P    +N ++     TGN E+ RK+
Sbjct: 443 EMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKL 475



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G A +  TYN+++ ++ +    E  V++ + M  KG + ++ T+ + +     A +  
Sbjct: 302 KEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKID 361

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK--HRFTPNLTTYTVL 354
           + + + E M     +  V T N L+  L      ++   LF+K+       PN  TY ++
Sbjct: 362 RGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNII 421

Query: 355 LGGWC---RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
           +       R ++++ A R+ +EM+D+G+ P     N +L GL+  G +  + KL  +
Sbjct: 422 ISAMFMRKRAEDMVLAARMVDEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRM 478


>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
 gi|223974035|gb|ACN31205.1| unknown [Zea mays]
 gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
          Length = 521

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 169/359 (47%), Gaps = 31/359 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           D  G       ++  +   G+AR+F+    ++  M  +G+L+     I M  +AAA E  
Sbjct: 128 DGAGLPPPPEAWHLAVWAAGKARRFDLAWEIVRRMRNRGVLTCRVMVILMERYAAASEVN 187

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTT--YTV 353
           KA+  F++M K+K ++       LL  L + K  ++A+ LLF  L+ +F P LT   + +
Sbjct: 188 KAIKTFDVMEKFKIESDQSVFYSLLHALCKIKNIEDAEELLF--LRKKFFP-LTAEGFNI 244

Query: 354 LLGGWCRV-KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L GWC V  ++ EA RVW EM +    PD +++ +M+    K+G   D +++++ MK +
Sbjct: 245 ILDGWCNVITDVAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGNLFDTLRVYDEMKKR 304

Query: 413 GPSPNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIV 452
           G  P +  Y  +++   ++N                       Y  +I       ++D  
Sbjct: 305 GWIPGIVVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNNMIVPLCESCKLDEA 364

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             +++ M  RG  P   TY+A +K    Q+  DE++++ ++M   G  P   T+ M++  
Sbjct: 365 RKVMESMILRGIVPTISTYHAFLK----QEGIDESLKLLQKMKEDGCGPKSDTFVMLIDK 420

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           +F         +VW+EM +    P    Y  L+ GL+       A +Y +EM EKG  +
Sbjct: 421 FFLLNESGNALRVWNEMRKYEISPVRAHYMTLVQGLVKHGCIPRALEYYDEMKEKGFAS 479



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA R+++EM      P   +Y +++  + + GN     +V+DEM +RG  P    Y  L+
Sbjct: 258 EAKRVWREMSNHCITPDGMSYTLMISCFSKVGNLFDTLRVYDEMKKRGWIPGIVVYNSLV 317

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             L  ++   +A+    ++ ++G++  V  YN     L  + +   LDE  + M
Sbjct: 318 YVLTRENCVKDAHNIFSKLTDEGLQPDVETYNNMIVPLCESCK---LDEARKVM 368


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 169/346 (48%), Gaps = 10/346 (2%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFEL 304
           R YN ++  L +  + +  V M E+M E+ +     ++ I ++  A A +   A  +F+ 
Sbjct: 289 RGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQK 348

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           +              L+  L  +    +A+ LF  +  R   P+  TY V++   C+   
Sbjct: 349 LLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGM 408

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  +  +MI+ G  PDVV +N +++GL K  +  +A+ LF  M+  G +PN RS+  
Sbjct: 409 LEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNT 468

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQK 482
           +I   C+Q+     C       R ++D  + LLK M + G  PD +TY+ LI  L  I +
Sbjct: 469 IILGLCQQSKIDQAC------QRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 522

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           + D+A  + ++MV+   KPT+ T N ++    + G  +  R+V D M+  G  PD  +Y 
Sbjct: 523 V-DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 581

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            L+ G     ++  A + L +M+ +G+   V+ Y    + L +A R
Sbjct: 582 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 627



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 28/336 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G   +  TYN M+    +    E    ++++M E G +  + T+   M+    +   ++A
Sbjct: 388 GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA 447

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL----------GRSKLPKEAQLLFDKLKHRFTPNL 348
           + +F  M +        + N ++  L           R KL +  +LL         P++
Sbjct: 448 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDV 507

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TY+ L+ G C +  + +A  +  +M+ +  KP VV  N ++ GL K G+  +A ++ + 
Sbjct: 508 VTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDA 567

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           M + G SP+V +Y  ++   C+           G   R R     +LL +M  RG  P+ 
Sbjct: 568 MVSSGQSPDVVTYNTLVHGHCR----------AGQTERAR-----ELLSDMVARGLAPNV 612

Query: 469 LTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           +TY AL+  L K  ++P EA  ++ +M  SG  P + TY  ++  +   G  + G K++ 
Sbjct: 613 VTYTALVSGLCKANRLP-EACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 671

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           EM+  G  PD   Y  L   L    RS  A + L E
Sbjct: 672 EMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 707



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L  Y +++ G C+   + EA +++ +M ++   PD  ++ I+++GL K GK +DA  LF+
Sbjct: 288 LRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQ 347

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            +   G +P+  +YT +I   C  N+                D   +L  +M  RGCPP 
Sbjct: 348 KLLHSGVTPSTVAYTSLIHGLCMANS---------------FDDARELFADMNRRGCPPS 392

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN +I     + M +EA  + K+M+  G  P + TYN +M    ++   E    +++
Sbjct: 393 PVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFN 452

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRS---------GEAYKYLEEMLEKGMKAPVLDYNK 578
           EM R GC P+  S+  +I GL  Q +           EA++ L+ M + G    V+ Y+ 
Sbjct: 453 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYST 512

Query: 579 FAADLSRAGR 588
             + L    R
Sbjct: 513 LISGLCSIAR 522



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 142/353 (40%), Gaps = 73/353 (20%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSK----LPKEAQLLFDKLKHRFTPNLTTYT 352
           +AV IF LM +       D  N L+++L + +    + K  Q++ D+      P+  T+T
Sbjct: 28  EAVKIFSLMEECH-SPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDR---GCFPDSFTFT 83

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            +L G C+   + EA  V +EM  +   P     + +   L   G    A +L E+M   
Sbjct: 84  TILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIM--- 140

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTY 471
            P  N  +Y I++   CK                 R+D   +L + M E+  P   G   
Sbjct: 141 -PVANSSAYNIVVVALCKAA---------------RVDDALELARTMSEKRIPLAAGSLD 184

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           + L+ LM   ++ DEA+++Y+E  R   +P + T N++++ +   G  +  R++   M  
Sbjct: 185 SVLVGLMDSGRI-DEALQVYRENRR---EPCLVTLNVLLEGFCSRGQVDKARELLRAMPD 240

Query: 532 RGCCPDDNSY-TVLIG----------------------------------------GLIS 550
             C PD+ SY TVL G                                        GL  
Sbjct: 241 EECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQ 300

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            DR  EA +  E+M E+ +      Y      L++AG+      L QK+  SG
Sbjct: 301 NDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSG 353



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 24/254 (9%)

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           N+GR+    EA  +F  ++   +P    Y VL+    + +      ++   M+D+G  PD
Sbjct: 22  NVGRTF---EAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPD 78

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
                 +L GL K GK  +A  + + M+++   P   + + +  + C +           
Sbjct: 79  SFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLE 138

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTYNALIKLMKIQKMPD 485
                N++ Y  ++       R+D   +L + M E+  P   G   + L+ LM   ++ D
Sbjct: 139 IMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRI-D 197

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+++Y+E  R   +P + T N++++ +   G  +  R++   M    C PD+ SY  ++
Sbjct: 198 EALQVYRENRR---EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVL 254

Query: 546 GGLISQDRSGEAYK 559
            GL    R  EA +
Sbjct: 255 DGLCKAGRVEEAVR 268



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 31/231 (13%)

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKGPSPNVRSYTIMIWKFCKQN 432
           M  +G  P  +    +++G   +G+  +A+K+F +M +   P P+               
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPD--------------- 45

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIY 491
             VY  LI     R+  + V  +++ M +RGC PD  T+  ++  L K  KM DEA  + 
Sbjct: 46  --VYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKM-DEAELVM 102

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS--YTVLIGGLI 549
            EM      P   T + +       G+ E   ++ + M      P  NS  Y +++  L 
Sbjct: 103 DEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIM------PVANSSAYNIVVVALC 156

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
              R  +A +    M EK +       +     L  +GR   +DE  Q  R
Sbjct: 157 KAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGR---IDEALQVYR 204


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 168/350 (48%), Gaps = 22/350 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKA 298
           GF H+  +Y+S++  L R+R+FE + ++L  +  + +   ET  +A+   +  A   +K 
Sbjct: 76  GFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETLFVALIQHYGKAHLVEKG 135

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +F  M  +     + + N LL  L    +  K +++     +  F PN  +Y +++ G
Sbjct: 136 IELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKG 195

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W +     +A  +++EM++KG +P VV +N  L  L + G+   A+ LF+ M  KG  PN
Sbjct: 196 WIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPN 255

Query: 418 VRSYTIMI--WKF------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y +++  W F                  CK     Y  L+T  G    +D +  LL 
Sbjct: 256 AVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLN 315

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM++R   PD +TYN L+  +  +    +A ++  +M   G  P   TY M++  Y   G
Sbjct: 316 EMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAG 375

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++   K+ + M+  G  P   ++  L+ GL+  + + +   ++ E +EK
Sbjct: 376 DFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEK 425



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
            K+  +A+A+FE  ++  FK    + + L+  L RS+  +  + +   L++R    N T 
Sbjct: 59  VKDPCEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNETL 118

Query: 351 YTVLLGGWCRVKNLMEAG-RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           +  L+  + +  +L+E G  ++++M        + + N++L  L+   + S A ++F+  
Sbjct: 119 FVALIQHYGKA-HLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQA 177

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              G  PN  SY IMI  + K+      C               +L  EM E+G  P  +
Sbjct: 178 YEMGFRPNSVSYNIMIKGWIKKGGWEQAC---------------NLFDEMLEKGVQPSVV 222

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TYN+ + ++  +   D A+ ++K M   G  P   TY ++M+ +   G Y+  +K+  +M
Sbjct: 223 TYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              GC     +Y VL+  L       E    L EM ++ +K  V+ YN     L + G+ 
Sbjct: 283 EFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKV 342

Query: 590 YVLDELAQKMRFSG 603
               ++  KM+  G
Sbjct: 343 GDAYKVLVKMQVGG 356


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 172/384 (44%), Gaps = 18/384 (4%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAM 286
           A++FF    +  G   +  TY SM+ +L +A + +  V M E + + + +     +   +
Sbjct: 257 AWKFF-HEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMI 315

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
             + +A +  +A ++ E          V   NC+L  L +     EA  +F+++K    P
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAP 375

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL+TY +L+   CR   L  A  + + M   G  P+V   NIM++ L K  K  +A  +F
Sbjct: 376 NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIF 435

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           E M                +K C  +   +  LI G G   R+D  Y + ++M +  C  
Sbjct: 436 EQMD---------------YKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRT 480

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + + Y +LIK        ++  +IYK+MV     P +   N  M   F+ G  E GR ++
Sbjct: 481 NSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMF 540

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +E+  R   PD  SY++LI GLI    + E Y+    M E+G       YN       + 
Sbjct: 541 EEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKC 600

Query: 587 GRSYVLDELAQKMRFSGKFEVSNV 610
           G+     +L ++M+  G FE + V
Sbjct: 601 GKVNKAYQLLEEMKTKG-FEPTVV 623



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 187/465 (40%), Gaps = 60/465 (12%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
           +  +C V+ E  +   + E  L           V+ VL R +   R A  +F W   +  
Sbjct: 36  VNDICNVL-ETGAWGPSAENALSALNFKPQPEFVIGVLRRLKDVNR-AIEYFRWYERRTE 93

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
             H   +YNS++ ++ R R F+ +  +L EM   G   S+ T    + +   A + ++  
Sbjct: 94  LPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGF 153

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
            + + M K+KF+        L+              LF +++   + P +  +T L+ G+
Sbjct: 154 DVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +   +  A  + +EM       D+V +N+ ++   K+GK   A K F  ++A G  P+ 
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273

Query: 419 RSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT MI   CK N                       Y  +I G+G+  + D  Y LL+ 
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
              +G  P  + YN ++  ++     DEA+R+++EM +    P + TYN+++    + G 
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDMLCRAGK 392

Query: 519 YEMGRKVWDEMIRRG-----------------------------------CCPDDNSYTV 543
            +   ++ D M + G                                   C PD+ ++  
Sbjct: 393 LDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCS 452

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           LI GL    R  +AYK  E+ML+   +   + Y     +    GR
Sbjct: 453 LIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 142/319 (44%), Gaps = 16/319 (5%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           M+    A E +K  A+FE +   +F     + + L+  L ++    E   LF  +K +  
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGC 583

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
             +   Y +++ G+C+   + +A ++  EM  KGF+P VV +  +++GL KI +  +A  
Sbjct: 584 VLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYM 643

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           LFE  K+K    NV                +Y+ LI GFG   R+D  Y +L+E+ ++G 
Sbjct: 644 LFEEAKSKRIELNV---------------VIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+  T+N+L+  +   +  +EA+  ++ M      P   TY +++    +   +     
Sbjct: 689 TPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFV 748

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
            W EM ++G  P   SYT +I GL       EA    +     G       YN     LS
Sbjct: 749 FWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808

Query: 585 RAGRSYVLDELAQKMRFSG 603
              R+     L ++ R  G
Sbjct: 809 NGNRAMDAFSLFEETRRRG 827



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 50/221 (22%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y+S++   G+  + +    +LEE+ +KGL  ++ T+   ++A   A+E  +A+  F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCF 715

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
           + M + K         C                         TPN  TY +L+ G C+V+
Sbjct: 716 QSMKELK---------C-------------------------TPNQVTYGILINGLCKVR 741

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
              +A   W EM  +G KP  +++  M+ GL K G  ++A  LF+  KA G  P      
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVP------ 795

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
                    ++A Y  +I G  N  R    + L +E   RG
Sbjct: 796 ---------DSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 17/255 (6%)

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           +Y  LL    R +N     ++  EM   GF P V   N  +E +L   K +   + F+V+
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSV---NTCIEMVLSCVKANKLREGFDVV 156

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           +      N+R +     KF +   + YT LI  F      D++  L ++M+E G  P   
Sbjct: 157 Q------NMRKF-----KF-RPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVH 204

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
            +  LI+    +   D A+ +  EM  S     I  YN+ + S+ + G  +M  K + E+
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI 264

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGR 588
              G  PD+ +YT +IG L   +R  EA +  E  LEK  + P    YN        AG+
Sbjct: 265 EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH-LEKNRRVPCTYAYNTMIMGYGSAGK 323

Query: 589 SYVLDELAQKMRFSG 603
                 L ++ R  G
Sbjct: 324 FDEAYSLLERQRAKG 338


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 63/423 (14%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +++ L E   +LS   V+  L+  R   + A  FF W   K GF HN ++Y  M+ ILGR
Sbjct: 82  LQSSLAELAPSLSKTTVLQTLQLIRTPAK-ALHFFRWVEAK-GFTHNEQSYFLMIEILGR 139

Query: 258 ARQFET----MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           +R        + S+ ++ G    L    F   + ++  A   ++++ +F+ M +      
Sbjct: 140 SRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPS 199

Query: 314 VDTINCLLENL---GRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAG 368
           V T N LL  +   GR+ + K+   LFD++   +  TP+  T+ +L+ G+C         
Sbjct: 200 VVTFNSLLSIVLKRGRTSMAKQ---LFDEMLDTYGVTPDTYTFNILIRGFC--------- 247

Query: 369 RVWNEMIDKGF-----------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--S 415
              N M+D+GF            PDVV +N +++GL + GK   A  + + M  K P  S
Sbjct: 248 --MNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLS 305

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV                 YT LI G+  ++ M     LL EM  RG  P+ +TYN LI
Sbjct: 306 PNV---------------VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLI 350

Query: 476 K-LMKIQKMPDEAVRIYKEMV-RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           + L + QK+ D+   I + MV   GF P   T N ++K++   G  E    V+++M    
Sbjct: 351 QGLCEAQKL-DKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELR 409

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-------GMKAPVLDYNKFAADLSRA 586
             PD  +Y+VL+  L  +     A ++ +E+ EK       G K  V  YN     L   
Sbjct: 410 VQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN 469

Query: 587 GRS 589
           G++
Sbjct: 470 GKT 472



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 191/445 (42%), Gaps = 77/445 (17%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFF-------CWAG------------DKPGFAHNSRT 247
           +N + N V  + ++   A +   RFF        WAG             + G + +  T
Sbjct: 143 LNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVT 202

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFELM 305
           +NS++SI+ +  +      + +EM +   ++ +T  F I +  F       +    F+ M
Sbjct: 203 FNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEM 262

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVK 362
           +++K    V T N L++ L R+   K A  +   +  +    +PN+ TYT L+ G+C  +
Sbjct: 263 SRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQ 322

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--------------------------- 395
           ++ EA  +  EM+ +G KP+ + +N +++GL +                           
Sbjct: 323 DMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTL 382

Query: 396 ---------IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
                    +GK  +A  +FE M      P+  +Y++++   C++            G+ 
Sbjct: 383 NTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQR------------GDF 430

Query: 447 RRMDIVYDLLKEME----ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           RR +  +D L E E    + GC P    YN + + +       +A R+++++++ G +  
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP 490

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             +Y  ++  + + G  E G  +   M+RR   PD  +Y ++I GL+ +     A+K LE
Sbjct: 491 -PSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLE 549

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAG 587
           +ML+         ++   A L   G
Sbjct: 550 KMLKSSHLPTTAIFHSILAALVEKG 574



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 149/347 (42%), Gaps = 35/347 (10%)

Query: 278 SMETFKIAMN-AFAAAKERKKAVAIFELMN----KYKFKAGVDTI------NCLLENLGR 326
           S +  KI  N    AA + K++ A+  L+N     ++ ++ +  +        +L+ L  
Sbjct: 45  SQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQL 104

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            + P +A   F  ++ + FT N  +Y +++    R +NL  A R +   I+K     V  
Sbjct: 105 IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNL-NAARNFVFSIEKKSGGAVKL 163

Query: 386 HNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
            +     L++     G   ++IK+F+ MK  G SP+V                 +  L++
Sbjct: 164 GDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSV---------------VTFNSLLS 208

Query: 442 GFGNRRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
               R R  +   L  EM +  G  PD  T+N LI+   +  M DE    +KEM R    
Sbjct: 209 IVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCD 268

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG--CCPDDNSYTVLIGGLISQDRSGEAY 558
           P + TYN ++    + G  ++   V   M+++     P+  +YT LI G   +    EA 
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
             L EM+ +G+K   + YN     L  A +   + E+ + M   G F
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGF 375



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 149/381 (39%), Gaps = 65/381 (17%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           P  + N  TY +++      +     +S+L EM  +GL   + T+   +     A++  K
Sbjct: 302 PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK 361

Query: 298 AVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
              I E ++    F     T+N L++        +EA  +F+K+   R  P+  TY+VL+
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 421

Query: 356 GGWCRVKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
              C+  +   A   ++E+ +K       G KP V A+N M E L   GK   A ++F  
Sbjct: 422 RSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQ 481

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           +  +G                 Q+   Y  LI G       +  +DLL  M  R   PD 
Sbjct: 482 LMKRG----------------TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDA 525

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG----------- 517
            TY  +I  +  +  P  A +  ++M++S   PT   ++ I+ +  + G           
Sbjct: 526 ETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKL 585

Query: 518 --------NYEMGRKVWDEMIRRGC--------------------CPDDNSYTVLIGGLI 549
                   N ++     +E++   C                      D +  + +I GL 
Sbjct: 586 MLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLC 645

Query: 550 SQDRSGEAYKYLEEMLEKGMK 570
              +  EA+    E++EKGM+
Sbjct: 646 KAHKVSEAFALYYELVEKGMQ 666


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 174/357 (48%), Gaps = 25/357 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK- 296
           + G   +  TY +++  L + ++FE    +++EM E G +  E    A+++      RK 
Sbjct: 289 QKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEA---ALSSLVEGLRRKG 345

Query: 297 KAVAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
           K V  F+L+N+ K    + ++   N L+ +L +     EA+LLF ++  +    N  TY+
Sbjct: 346 KVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYS 405

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L+  +CR   L  A     +MI  G K  V  +N ++ G  K+G  S A+  F+ M  K
Sbjct: 406 ILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDK 465

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P V SYT                LI+G+ N+ ++   + L  EM  +G  P+  T+ 
Sbjct: 466 GLKPTVVSYT---------------SLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFT 510

Query: 473 ALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            LI  L +  +M D A R++ EM+     P   TYN++++ + + GN     ++ ++M++
Sbjct: 511 TLISALFRANRMTD-AFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQ 569

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +G  PD  +Y  LI  L S  R  EA K+++++  +  K   + Y+       + GR
Sbjct: 570 KGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGR 626



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 21/345 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
            YN++++ L +  +F+    + +EMGEKGL + + T+ I +++F    +   A+     M
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKM 427

Query: 306 NKYKFKAGVDTINCLLENLGRSKLP--KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
                K  V   N L+   G  KL     A   FD++  +   P + +YT L+ G+C   
Sbjct: 428 IMAGIKITVYPYNSLIN--GHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKG 485

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            L EA R+++EM  KG  P+      ++  L +  + +DA +LF+ M  +   PN  +Y 
Sbjct: 486 KLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYN 545

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
           +MI   CK+   V                 ++LL +M ++G  PD  TY  LI  +    
Sbjct: 546 VMIEGHCKEGNTVKA---------------FELLNQMVQKGLVPDTYTYRPLISSLCSTG 590

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              EA +   ++ R  FK     Y+ ++  Y + G       V  EM++RG   D   Y 
Sbjct: 591 RVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYA 650

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           VLI G I +  +   +  L+ M ++ ++   + Y       S+AG
Sbjct: 651 VLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAG 695



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 161/380 (42%), Gaps = 24/380 (6%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           RT   +++ L + R+ + ++ +  E+   G+   +  +   + +F   K   KA  + + 
Sbjct: 194 RTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQR 253

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M        V   N L+  L ++K   EA  + + L  +  T +  TY  L+ G C+V+ 
Sbjct: 254 MESSDLNVVV--YNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQE 311

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
                 V +EMI+ GF P   A + ++EGL + GK  DA  L   +K  G  P++  Y  
Sbjct: 312 FEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNA 371

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I   CK                     N   Y+ LI  F  R ++D     L +M   G
Sbjct: 372 LINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAG 431

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
                  YN+LI           AV  + EM+  G KPT+ +Y  ++  Y   G      
Sbjct: 432 IKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAF 491

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +++ EM  +G  P+  ++T LI  L   +R  +A++  +EMLE+ M    + YN      
Sbjct: 492 RLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGH 551

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            + G +    EL  +M   G
Sbjct: 552 CKEGNTVKAFELLNQMVQKG 571



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 169/403 (41%), Gaps = 65/403 (16%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AFR +     K G A N+ T+ +++S L RA +      + +EM E+ ++  E T+ + +
Sbjct: 490 AFRLYHEMTGK-GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMI 548

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVD---TINCLLENLGRSKLPKEAQLLFDKL-KH 342
                     KA   FEL+N+   K  V    T   L+ +L  +    EA+   D L + 
Sbjct: 549 EGHCKEGNTVKA---FELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHRE 605

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG------------------------ 378
            F  N   Y+ LL G+C+   L +A  V  EM+ +G                        
Sbjct: 606 HFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAV 665

Query: 379 -----------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
                       +PD V +  M++G  K G    A  ++++M  +G +PN+ +YT +I +
Sbjct: 666 FGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINE 725

Query: 428 FCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            CK                     N   Y C +        M+    L  +M  +G   +
Sbjct: 726 LCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLAN 784

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            ++YN L++        +EA ++  EM+ +   P   TY+ I+    + GN +   + WD
Sbjct: 785 TVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWD 844

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            M+ +G  PD  +Y  LI G       G+A++  ++M+ +G+K
Sbjct: 845 TMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVK 887



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 154/374 (41%), Gaps = 23/374 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           G+K G   N  TY+ ++    R  + +T +  L +M   G+ +++  +   +N       
Sbjct: 393 GEK-GLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGN 451

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
              AV+ F+ M     K  V +   L+     + KL +  +L  +       PN  T+T 
Sbjct: 452 LSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+    R   + +A R+++EM+++   P+ V +N+M+EG  K G    A +L   M  KG
Sbjct: 512 LISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKG 571

Query: 414 PSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVY 453
             P+  +Y  +I   C                    K N   Y+ L+ G+    R+    
Sbjct: 572 LVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDAL 631

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            + +EM +RG   D + Y  LI     ++       + K M     +P    Y  ++  Y
Sbjct: 632 GVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGY 691

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G+ +    +WD MI  GC P+  +YT LI  L       +A    +EML        
Sbjct: 692 SKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNH 751

Query: 574 LDYNKFAADLSRAG 587
           + Y  F   L+R G
Sbjct: 752 VTYCCFLDHLAREG 765



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 171/418 (40%), Gaps = 46/418 (11%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG------------ 275
           A RFF + G    F H++ ++  ++  L  A  F    S+L+ +  +G            
Sbjct: 88  ALRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALL 147

Query: 276 -------LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
                   +S   F + + ++   K    +V IF LM + +    V T+  +L  L + +
Sbjct: 148 DCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIR 207

Query: 329 LPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD--VVA 385
                 +LF + L     P++  Y  ++  +C +KN  +A     EMI +    D  VV 
Sbjct: 208 RVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKA----KEMIQRMESSDLNVVV 263

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------- 430
           +N+++ GL K  +  +A+++   +  KG + +  +Y  ++   CK               
Sbjct: 264 YNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMI 323

Query: 431 -----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                   A  + L+ G   + ++   +DL+  +++ G  P    YNALI  +      D
Sbjct: 324 ELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFD 383

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  ++KEM   G      TY++++ S+ + G  +       +MI  G       Y  LI
Sbjct: 384 EAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLI 443

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            G         A  + +EM++KG+K  V+ Y    +     G+ +    L  +M   G
Sbjct: 444 NGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKG 501



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 18/229 (7%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y SM+    +A   +    + + M ++G   ++ T+   +N    A    KA  +++ M 
Sbjct: 684 YTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEML 743

Query: 307 KYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                    T  C L++L R   + K  QL  D LK     N  +Y +L+ G+C++  + 
Sbjct: 744 VSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKG-LLANTVSYNILVRGFCKLGRVE 802

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA ++ +EMID    PD + ++ ++    + G    AI+ ++ M  KG  P+  +Y  +I
Sbjct: 803 EATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLI 862

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                     Y C I G      +   ++L  +M  RG  P+  T+ +L
Sbjct: 863 ----------YGCCIAG-----ELGKAFELRDDMIRRGVKPNQATHKSL 896


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 172/363 (47%), Gaps = 28/363 (7%)

Query: 217 VLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           VL+  R  + PA   RFF W  +K GF+H  +++  M+  LGRAR      + L  +  +
Sbjct: 71  VLQTLRLIKVPADGLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERR 129

Query: 275 --GLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
             G + ++   F   + ++  A   +++V +F+ M +      V T N LL  L +    
Sbjct: 130 SNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRT 189

Query: 331 KEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             A  LFD+++  +  TP+  T+  L+ G+C+   + EA R++ +M      PDVV +N 
Sbjct: 190 GMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNT 249

Query: 389 MLEGLLKIGKRSDAIKLFEVM--KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           +++GL + GK   A  +   M  KA    PNV SYT ++  +C                +
Sbjct: 250 IIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCM---------------K 294

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA--VRIYKEMVRSGFKPTIH 504
           + +D    +  +M  RG  P+ +TYN LIK +      DE   + I      + F P   
Sbjct: 295 QEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDAC 354

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T+N+++K++   G+ +   KV+ EM+     PD  SY+VLI  L  ++    A     E+
Sbjct: 355 TFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNEL 414

Query: 565 LEK 567
            EK
Sbjct: 415 FEK 417



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 191/434 (44%), Gaps = 46/434 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKK 297
           G + +  T+NS++SIL +  +      + +EM     ++ +  TF   +N F       +
Sbjct: 168 GISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDE 227

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVL 354
           A  IF+ M  Y     V T N +++ L R+   K A  +   +  + T   PN+ +YT L
Sbjct: 228 AFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTL 287

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C  + + EA  V+++M+ +G KP+ V +N +++GL +   R D IK  +++     
Sbjct: 288 VRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSE-AHRYDEIK--DILIGGND 344

Query: 415 -----SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRM 449
                +P+  ++ I+I   C                      ++A Y+ LI     R   
Sbjct: 345 AFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEF 404

Query: 450 DIVYDLLKEMEER-------GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           D    L  E+ E+        C P    YN + + +       +A ++++++++ G +  
Sbjct: 405 DRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDP 464

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             +Y  ++  + + G ++   ++   M+RR   PD  +Y +LI GL+    +  A+  L+
Sbjct: 465 -PSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQ 523

Query: 563 EMLEKGMKAPVLDYNKFAADLSR---AGRSYVLDELAQKMRFSGKFEVSNVLAR--WAET 617
            ML          ++   A+L++   A  S+ L  L  + R     ++S  + R  ++  
Sbjct: 524 RMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSA 583

Query: 618 TKNRVYRKDRIETD 631
            K + +   R+  D
Sbjct: 584 QKEKAFLIVRLLYD 597



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 19/209 (9%)

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           ++   +L+ L  I   +D ++ F+ +  KG S   +S+ +M+                  
Sbjct: 66  ISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSFFLML---------------EFL 110

Query: 444 GNRRRMDIVYDLLKEMEER--GCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           G  R +++  + L  +E R  GC       +N+LI+      +  E+V++++ M + G  
Sbjct: 111 GRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGIS 170

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYK 559
           P++ T+N ++    + G   M   ++DEM R  G  PD  ++  LI G        EA++
Sbjct: 171 PSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFR 230

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             ++M        V+ YN     L RAG+
Sbjct: 231 IFKDMELYHCNPDVVTYNTIIDGLCRAGK 259



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P   ++   +++ +++ K+P + +R +  +   GF     ++ ++++   +  N  + R 
Sbjct: 62  PSQTISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARN 121

Query: 525 VWDEMIRR--GCCP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
               + RR  GC    D  +  LI    +     E+ K  + M + G+   VL +N   +
Sbjct: 122 FLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLS 181

Query: 582 DLSRAGRSYVLDELAQKMR 600
            L + GR+ +  +L  +MR
Sbjct: 182 ILLKRGRTGMAHDLFDEMR 200


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 195/423 (46%), Gaps = 63/423 (14%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +++ L E   +LS   V+  L+  R   + A  FF W   K GF HN ++Y  M+ ILGR
Sbjct: 82  LQSSLAELAPSLSKTTVLQTLQLIRTPAK-ALHFFRWVEAK-GFTHNEQSYFLMIEILGR 139

Query: 258 ARQFET----MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           +R        + S+ ++ G    L    F   + ++  A   ++++ +F+ M +      
Sbjct: 140 SRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPS 199

Query: 314 VDTINCLLENL---GRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAG 368
           V T N LL  +   GR+ + K+   LFD++   +  TP+  T+ +L+ G+C         
Sbjct: 200 VVTFNSLLSIVLKRGRTSMAKQ---LFDEMLDTYGVTPDTYTFNILIRGFC--------- 247

Query: 369 RVWNEMIDKGF-----------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--S 415
              N M+D+GF            PDVV +N +++GL + GK   A  + + M  K P  S
Sbjct: 248 --MNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLS 305

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV +YT +I  +C                ++ M     LL EM  RG  P+ +TYN LI
Sbjct: 306 PNVVTYTTLIRGYCM---------------KQDMAEALSLLAEMVSRGLKPNKITYNTLI 350

Query: 476 K-LMKIQKMPDEAVRIYKEMV-RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           + L + QK+ D+   I + MV   GF P   T N ++K++   G  E    V+++M    
Sbjct: 351 QGLCEAQKL-DKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELR 409

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-------GMKAPVLDYNKFAADLSRA 586
             PD  +Y+VL+  L  +     A ++ +E+ EK       G K  V  YN     L   
Sbjct: 410 VQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN 469

Query: 587 GRS 589
           G++
Sbjct: 470 GKT 472



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 191/445 (42%), Gaps = 77/445 (17%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFF-------CWAG------------DKPGFAHNSRT 247
           +N + N V  + ++   A +   RFF        WAG             + G + +  T
Sbjct: 143 LNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVT 202

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFELM 305
           +NS++SI+ +  +      + +EM +   ++ +T  F I +  F       +    F+ M
Sbjct: 203 FNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEM 262

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVK 362
           +++K    V T N L++ L R+   K A  +   +  +    +PN+ TYT L+ G+C  +
Sbjct: 263 SRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQ 322

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--------------------------- 395
           ++ EA  +  EM+ +G KP+ + +N +++GL +                           
Sbjct: 323 DMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTL 382

Query: 396 ---------IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
                    +GK  +A  +FE M      P+  +Y++++   C++            G+ 
Sbjct: 383 NTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQR------------GDF 430

Query: 447 RRMDIVYDLLKEME----ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           RR +  +D L E E    + GC P    YN + + +       +A R+++++++ G +  
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP 490

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             +Y  ++  + + G  E G  +   M+RR   PD  +Y ++I GL+ +     A+K LE
Sbjct: 491 -PSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLE 549

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAG 587
           +ML+         ++   A L   G
Sbjct: 550 KMLKSSHLPTTAIFHSILAALVEKG 574



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 149/347 (42%), Gaps = 35/347 (10%)

Query: 278 SMETFKIAMN-AFAAAKERKKAVAIFELMN----KYKFKAGVDTI------NCLLENLGR 326
           S +  KI  N    AA + K++ A+  L+N     ++ ++ +  +        +L+ L  
Sbjct: 45  SQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQL 104

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            + P +A   F  ++ + FT N  +Y +++    R +NL  A R +   I+K     V  
Sbjct: 105 IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNL-NAARNFVFSIEKKSGGAVKL 163

Query: 386 HNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
            +     L++     G   ++IK+F+ MK  G SP+V                 +  L++
Sbjct: 164 GDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSV---------------VTFNSLLS 208

Query: 442 GFGNRRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
               R R  +   L  EM +  G  PD  T+N LI+   +  M DE    +KEM R    
Sbjct: 209 IVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCD 268

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG--CCPDDNSYTVLIGGLISQDRSGEAY 558
           P + TYN ++    + G  ++   V   M+++     P+  +YT LI G   +    EA 
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
             L EM+ +G+K   + YN     L  A +   + E+ + M   G F
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGF 375



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 155/394 (39%), Gaps = 63/394 (15%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           P  + N  TY +++      +     +S+L EM  +GL   + T+   +     A++  K
Sbjct: 302 PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK 361

Query: 298 AVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
              I E ++    F     T+N L++        +EA  +F+K+   R  P+  TY+VL+
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 421

Query: 356 GGWCRVKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
              C+  +   A   ++E+ +K       G KP V A+N M E L   GK   A ++F  
Sbjct: 422 RSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQ 481

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
           +  +G + +  SY  +I   C++                    +A  Y  +I G   +  
Sbjct: 482 LMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGD 540

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM----VRSGFKPTIH 504
             + +  L++M +    P    +++++  +  +    E+  + K M    +R     + H
Sbjct: 541 PVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTH 600

Query: 505 TYNMIMKSYFQTGN-------YEMGRKVWDEMIRRGCCP--------------------- 536
           T  ++ KS  Q          YE G  V  E +    C                      
Sbjct: 601 TVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSV 660

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           D +  + +I GL    +  EA+    E++EKGM+
Sbjct: 661 DIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQ 694


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 200/433 (46%), Gaps = 41/433 (9%)

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           L + GI  +  L+  V + F  + +     + WA ++PGF  +S  ++S+++ L + ++F
Sbjct: 95  LTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEF 154

Query: 262 ETMVSML------EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           +   S++      ++  ++ L+S+ TF I +  +A A   K A+  FE     K  + VD
Sbjct: 155 DDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKK--SIVD 212

Query: 316 TIN------CLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLME 366
           +++       L+++L +    +EA     + K     + P++  Y ++L GW R + L  
Sbjct: 213 SVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKH 272

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A R+W EM ++  +P VV +  ++EG  ++ +   A+++   M  +G  PN   Y  +I 
Sbjct: 273 AERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIID 332

Query: 427 KFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
              +                       + Y  L+ GF     ++    +LK+M  RG  P
Sbjct: 333 ALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLP 392

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
              TYN   +        DE + +Y +M+ SG  P   TY++++K   +    E+  +V 
Sbjct: 393 IPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVS 452

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            EM  +G   D  + T+L   L    +  EA+   E+M+ +G+    L + K   +L + 
Sbjct: 453 MEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELKKQ 512

Query: 587 GRSYVLDELAQKM 599
           G    ++E+A+K+
Sbjct: 513 G----MNEMARKL 521


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 18/328 (5%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLL 336
           ++ T+   +++F      ++A+ +   M          T N L+  L  S ++ +  +L+
Sbjct: 201 TVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELI 260

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            D L+     ++ TY  L+ G+C    + EA R+  EM+ +G  P VV +N ++ GL K 
Sbjct: 261 QDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKW 320

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           G+ SDA KL +VM  K   P++ SY  +I+ +            T  GN   +   + L 
Sbjct: 321 GRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY------------TRLGN---IGEAFLLF 365

Query: 457 KEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            E+  R   P  +TYN LI  L ++  + D A+R+  EM++ G  P + T+   ++ + +
Sbjct: 366 AELRYRSLAPSVVTYNTLIDGLCRLGDL-DVAMRLKDEMIKHGPDPDVFTFTTFVRGFCK 424

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            GN  M ++++DEM+ RG  PD  +Y   I G +      +A+   EEML +G    ++ 
Sbjct: 425 MGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 484

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           YN F   L + G      EL +KM ++G
Sbjct: 485 YNVFIDGLHKLGNLKEASELVKKMLYNG 512



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 201/445 (45%), Gaps = 30/445 (6%)

Query: 170 VSYKSTADPREIERVCKVI---DELFSLDRNMEAVLDECGI---NLSHNLVVDVLERFRH 223
           VS     D +   RV +++   D    + R +  V+ ECGI    +++N ++D   + + 
Sbjct: 158 VSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCK-KG 216

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETF 282
             + A +   +     G + N  TYN +++ L  + + E    ++++M   GL +S+ T+
Sbjct: 217 MVQEALQLL-FQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTY 275

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342
              +  +    + ++A  + E M        V T N ++  L +     +A+ L D + +
Sbjct: 276 DPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVN 335

Query: 343 R-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           +   P+L +Y  L+ G+ R+ N+ EA  ++ E+  +   P VV +N +++GL ++G    
Sbjct: 336 KNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDV 395

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLIT 441
           A++L + M   GP P+V ++T  +  FCK                     +   Y   I 
Sbjct: 396 AMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIV 455

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           G          + + +EM  RG PPD +TYN  I  +       EA  + K+M+ +G  P
Sbjct: 456 GELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVP 515

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              TY  I+ ++   G+    R ++ EM+ +G  P   +YTVLI     + R   A  + 
Sbjct: 516 DHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHF 575

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRA 586
            EM EKG+   V+ YN     L + 
Sbjct: 576 FEMHEKGVHPNVITYNALINGLCKV 600



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 155/325 (47%), Gaps = 17/325 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++M  L +  +      +L+ M  K L+  + ++   +  +       +A  +F  +
Sbjct: 309 TYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAEL 368

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   V T N L++ L R   L    +L  + +KH   P++ T+T  + G+C++ NL
Sbjct: 369 RYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNL 428

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  +++EM+++G +PD  A+   + G LK+G  S A  + E M A+G  P++ +Y + 
Sbjct: 429 PMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVF 488

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I    K             GN +      +L+K+M   G  PD +TY ++I    +    
Sbjct: 489 IDGLHK------------LGNLKEAS---ELVKKMLYNGLVPDHVTYTSIIHAHLMAGHL 533

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A  ++ EM+  G  P++ TY +++ SY   G  ++    + EM  +G  P+  +Y  L
Sbjct: 534 RKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNAL 593

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGM 569
           I GL    +  +AY +  EM  KG+
Sbjct: 594 INGLCKVRKMDQAYNFFAEMQAKGI 618



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 168/377 (44%), Gaps = 36/377 (9%)

Query: 213 LVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           L+V VL   R+    A RFF WA  + GF  +  +Y+ ++ IL R     +   ++E+  
Sbjct: 49  LLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEK-- 106

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
              ++S++     ++  ++++    +V +               ++ LL    +  L ++
Sbjct: 107 ---VVSVKMENGVIDVVSSSEVSMPSVKLI--------------LDLLLWIYVKKSLLEK 149

Query: 333 AQLLFDKLKHR-FTPNLTTYT-VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
             L+F K+  +   P++     VL     R  N+  A  V+N M++ G  P VV +N ML
Sbjct: 150 CLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTML 209

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
           +   K G   +A++L   M+A G SPN  +Y +               L+ G  +   M+
Sbjct: 210 DSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNV---------------LVNGLSHSGEME 254

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              +L+++M   G      TY+ LI+    +   +EA R+ +EM+  G  PT+ TYN IM
Sbjct: 255 QAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIM 314

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               + G     RK+ D M+ +   PD  SY  LI G       GEA+    E+  + + 
Sbjct: 315 YGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLA 374

Query: 571 APVLDYNKFAADLSRAG 587
             V+ YN     L R G
Sbjct: 375 PSVVTYNTLIDGLCRLG 391



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +L    L K   L  + L     P++ TYTVL+  +     L  A   + EM +KG  P+
Sbjct: 527 HLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPN 586

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V+ +N ++ GL K+ K   A   F  M+AKG SPN  +YTI+I + C             
Sbjct: 587 VITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENC------------- 633

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
             N         L K+M +R   PD  T+ +L+K
Sbjct: 634 --NLGHWQEALRLYKDMLDREIQPDSCTHRSLLK 665



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 110/249 (44%), Gaps = 32/249 (12%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE--------------VMKAKGPSP 416
           W E    GFK   ++++++L+ L + G    A  + E              V  ++   P
Sbjct: 70  WAER-QTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMP 128

Query: 417 NVR-SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           +V+    +++W + K+ + +  CL+  +              +M  +G  PD    N ++
Sbjct: 129 SVKLILDLLLWIYVKK-SLLEKCLLVFY--------------KMVSKGLLPDVKNCNRVL 173

Query: 476 KLMKIQ-KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +L++ +    D A  +Y  MV  G  PT+ TYN ++ S+ + G  +   ++  +M   GC
Sbjct: 174 RLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGC 233

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+D +Y VL+ GL       +A + +++ML  G++  V  Y+         G+      
Sbjct: 234 SPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASR 293

Query: 595 LAQKMRFSG 603
           L ++M   G
Sbjct: 294 LGEEMLSRG 302


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 175/383 (45%), Gaps = 26/383 (6%)

Query: 197 NMEAVLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           N  +VLDE  + +S  LV +VL         +      R A+RFF W+G++  F H   +
Sbjct: 94  NTNSVLDELNVRVSGLLVREVLVGILRNLSYDNKTRCARLAYRFFVWSGEQDCFRHTVNS 153

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y+ +M I     +++ M  +++EM + G   +  TF + + +   A   K+AV  F    
Sbjct: 154 YHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSK 213

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
            + ++    + N +L +L   K  K  + ++++ L+  F+P++ TY +LL    R+  + 
Sbjct: 214 TFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGKMD 273

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              R+++EM   G  PD   +NI+L  L K  K   A+     MK  G   +V  YT   
Sbjct: 274 RFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTT-- 331

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        LI G      ++     L EM + GC PD + Y  +I    +    +
Sbjct: 332 -------------LIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELE 378

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A  ++KEM   G  P + TYN +++     G +     +  EM  RGC P+   Y+ L+
Sbjct: 379 KAKEMFKEMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLV 438

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
             L    +  EA K + +M++KG
Sbjct: 439 SYLRKAGKLSEARKVIRDMVKKG 461



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 19/264 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           F   + +Y +L+  +          R+ +EM+  GF       N+++    + G    A+
Sbjct: 147 FRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAV 206

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
             F   K     P   SY          NA + + L  G    + ++ VY+   +M E G
Sbjct: 207 VQFMKSKTFNYRPFKHSY----------NAILNSLL--GVKQYKLIEWVYE---QMLEDG 251

Query: 464 CPPDGLTYNALIKL-MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
             PD LTYN L+    ++ KM D   R++ EM R G  P  +TYN+++    +       
Sbjct: 252 FSPDVLTYNILLWTNYRLGKM-DRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAA 310

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY-LEEMLEKGMKAPVLDYNKFAA 581
               + M   G       YT LI GL S+  + EA KY L+EM++ G +  V+ Y     
Sbjct: 311 LTTLNHMKEVGIDLSVLHYTTLIDGL-SRAGNLEACKYFLDEMVKAGCRPDVVCYTVMIT 369

Query: 582 DLSRAGRSYVLDELAQKMRFSGKF 605
               +G      E+ ++M   G+ 
Sbjct: 370 GYVVSGELEKAKEMFKEMTVEGQL 393


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 179/418 (42%), Gaps = 57/418 (13%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF-------------------------- 261
           A++FF W   + G   + R   +++ +LG AR+F                          
Sbjct: 2   AYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELA 61

Query: 262 ---------ETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
                    E  V  L+ M G +  L+   +   ++AF  A   +KA+A++ +M +   +
Sbjct: 62  RGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLR 121

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRV 370
               T N L+    ++K       LF++++++  +PN+ TY++L+   C+   + +A +V
Sbjct: 122 PDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKV 181

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG----------------- 413
           + +M  +G +P++  +  M++GL K G    A  LFE M ++G                 
Sbjct: 182 FLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGR 241

Query: 414 ---PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                   + +  M+ K  + +   +T L+ G G   R      + +E  + GC  D   
Sbjct: 242 SGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNL 301

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           YN LI  +   K  DEA  I+ E+   G  P ++T+N +M    ++G       +  +M 
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMK 361

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           R GC PD   Y  LI GL    R  EA + L EM   G +  V+ YN    +  + GR
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGR 419



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 181/396 (45%), Gaps = 35/396 (8%)

Query: 205 CGINLS-HNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           C +  S +N ++D   +  + ++    +R    +G +P    ++ T+N +M+   +A++ 
Sbjct: 85  CALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRP----DTYTFNVLMNAFKKAKRV 140

Query: 262 ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           +++  + EEM  +    ++ T+ I ++A       +KA+ +F  M     +  + T   +
Sbjct: 141 DSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSM 200

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           ++ LG+S    +A  LF+++           Y  L+ G  R      A +++ EM+ KG 
Sbjct: 201 IDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGL 260

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
           +PD V    ++ GL   G+ S+A ++F+  +  G + +V  Y ++I   CK         
Sbjct: 261 QPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWE 320

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       +   +  L+ G     R+   + LL +M+  GC PD   YN LI  ++
Sbjct: 321 IFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLR 380

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                +EA ++  EM   G++P + TYN ++    + G  E   ++++E+  +G   +  
Sbjct: 381 KSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG-FANTV 439

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           +Y  ++ GL    R  EAYK     L  GMK   +D
Sbjct: 440 TYNTILNGLCMAGRVDEAYK-----LFNGMKQETVD 470



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C   A+ Y  LI  F           + + M + G  PD  T+N L+   K  K  D   
Sbjct: 85  CALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVW 144

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++++EM      P + TY++++ +  + G  E   KV+ +M  RGC P+  +YT +I GL
Sbjct: 145 KLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGL 204

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                  +A+   EEM  +G+ A  + YN     L R+GR+    +L ++M   G
Sbjct: 205 GKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKG 259



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 139/341 (40%), Gaps = 68/341 (19%)

Query: 181 IERVCKVIDELFSLDRNMEAVLD----ECGINL-SHNLVVDVLERFRHARRPAFRFFCWA 235
           I+ VCK       +++ ++  LD     C  N+ ++  ++D L +  H  +  F F    
Sbjct: 166 IDAVCKC----GGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMT 221

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL------------------- 276
            +  G       YNS++  LGR+ + +    +  EM  KGL                   
Sbjct: 222 SE--GLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGR 279

Query: 277 -----------------LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
                            L +  + + ++    +K   +A  IF  + +      V T N 
Sbjct: 280 ASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNA 339

Query: 320 LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           L++ L +S    +A +L   +K    TP++T Y  L+ G  +   + EAG++  EM   G
Sbjct: 340 LMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLG 399

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
           ++PDVV +N +++   K G+  DA++LFE + AKG +                N   Y  
Sbjct: 400 YEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA----------------NTVTYNT 443

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGC----PPDGLTYNALI 475
           ++ G     R+D  Y L   M++        PD +TY  L+
Sbjct: 444 ILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 166/362 (45%), Gaps = 31/362 (8%)

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK-AVAIF-ELMNKYKFKAGVDTINCLLE 322
           S+L      GL  +  TF I    FA +  R   A+ +F  L   +     +   N LL+
Sbjct: 124 SILALFPRHGLAFTPRTFPILFERFAMSHRRPDLAIRLFLSLHRSHGIAQDLPLFNSLLD 183

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            L +S+   +A  L   L+ RF P+  TY  L  GWCRVK+   A  +  +M++ G  P 
Sbjct: 184 ALVKSRRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPT 243

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
              +NI+L+G  + G+   A   F  MK +G +           + CK +   YT ++ G
Sbjct: 244 KATYNIILKGFFRSGQLQHAWDFFLQMKRRGSND----------ENCKPDVVSYTTVLHG 293

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
            G   ++D    +  EM   GC P   TYNALI++   +   ++AV ++ +MVR G+ P 
Sbjct: 294 LGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPN 353

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TY ++++     G      K+ D M   GC P+  +Y VLI   + +   GE  K L+
Sbjct: 354 VVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEE---GEIEKGLD 410

Query: 563 --EMLEKGMKA-PVLD-YN---------KFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
             E + KG +  P  D YN         K A D++ A R  V  E+  +     KF  + 
Sbjct: 411 LFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVV--EMVDRGYLPRKFMFNR 468

Query: 610 VL 611
           VL
Sbjct: 469 VL 470



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 33/365 (9%)

Query: 194 LDRNMEAVLDECGINLSHNLVVDVLERFRHA-RRP--AFRFFCWAGDKPGFAHNSRTYNS 250
           L  ++ A+    G+  +      + ERF  + RRP  A R F       G A +   +NS
Sbjct: 121 LTSSILALFPRHGLAFTPRTFPILFERFAMSHRRPDLAIRLFLSLHRSHGIAQDLPLFNS 180

Query: 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++  L ++R+     S++  + ++      T+    + +   K+  +A+ I   M +   
Sbjct: 181 LLDALVKSRRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGI 240

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT------PNLTTYTVLLGGWCRVKNL 364
                T N +L+   RS   + A   F ++K R +      P++ +YT +L G      L
Sbjct: 241 APTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQL 300

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A +V++EM  +G KP    +N +++   K G   DA+ +F+ M  KG  PNV +YT++
Sbjct: 301 DKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVL 360

Query: 425 IWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE-RG 463
           I                       C+ N   Y  LI        ++   DL + M +   
Sbjct: 361 IRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEE 420

Query: 464 CPPDGLTYNALIKLMKIQKMPDE---AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           C P+  TYN +I  M ++K  ++   A R+  EMV  G+ P    +N ++     TGN E
Sbjct: 421 CLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLTGNQE 480

Query: 521 MGRKV 525
           + R++
Sbjct: 481 LSREL 485


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           DK G   N+ TY  ++  L +A      +  L++M + GL      + + ++    A   
Sbjct: 41  DKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMI 100

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A  +F  M      A   T   L+ +LGR K  +EA LLFD+++ R  TP+   YT +
Sbjct: 101 DEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNV 160

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +C+   +  A  V  +M+DK   PD    N ++  + + G+   A ++FE MK  G 
Sbjct: 161 IDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGV 220

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           + N  S+          NA +  C     G   ++ + Y  + EME RG  P+ +T+N L
Sbjct: 221 AVNTVSF----------NAMLDCC-----GKAGKVGLAYQFMDEMEARGIKPNSITFNTL 265

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +   K   EA ++ +EM  +G  P + TY  +++++ + GN     +++ +M + GC
Sbjct: 266 INCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGC 325

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
             +  +Y +LI  L+   R  +A     +M +KG+             L  A  + VL +
Sbjct: 326 SANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGI-------------LPDAITATVLQQ 372

Query: 595 LAQKMRFSG 603
           LA K + SG
Sbjct: 373 LAGKCKLSG 381



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 455 LLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +L  +++  C    L  NA+I    +  +I K+ DE    ++E+ + G KP  +TY  ++
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDE----FQELDKHGSKPNAYTYKCVI 56

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           +S  + GN  +     D+MI+ G  PD   Y V++ GL   +   EA K    M  K M 
Sbjct: 57  QSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASM--KSMG 114

Query: 571 APVLDYN 577
            P  DY 
Sbjct: 115 CPADDYT 121


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 170/359 (47%), Gaps = 17/359 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++  L +A   E   ++L+EM + G +    TF I  + +++ ++ + A+ ++E  
Sbjct: 286 TFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETA 345

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                K    T + LL  L +  K+ K  ++L  ++     PN   Y  ++ G+CR  +L
Sbjct: 346 VDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDL 405

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           + A      M  +G KPD +A+N ++    ++G+  +A K    MK KG SP+V +Y I 
Sbjct: 406 VGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI- 464

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                         LI G+G +   D  +D+LKEME+ G  P+ ++Y  LI  +      
Sbjct: 465 --------------LIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKL 510

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  + ++M   G  P +  YNM++      G  E   +   EM+++G   +  +Y  L
Sbjct: 511 LEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTL 570

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           I GL    +  EA   L E+  KG+K  V  YN   +    AG       L ++M+ SG
Sbjct: 571 IDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG 629



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 19/280 (6%)

Query: 336 LFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LF+++KH R  P++  Y VL+ G C+ K + +A ++++EM+ +   P ++ +N +++G  
Sbjct: 201 LFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYC 260

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           K G    + K+ E MKA    P++                 +  L+ G      ++   +
Sbjct: 261 KAGNPEKSFKVRERMKADHIEPSL---------------ITFNTLLKGLFKAGMVEDAEN 305

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +LKEM++ G  PD  T++ L       +  + A+ +Y+  V SG K   +T ++++ +  
Sbjct: 306 VLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALC 365

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E   ++    + +G  P++  Y  +I G   +     A   +E M ++GMK   L
Sbjct: 366 KEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHL 425

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG---KFEVSNVL 611
            YN         G     ++   KM+  G     E  N+L
Sbjct: 426 AYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNIL 465



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 143/352 (40%), Gaps = 21/352 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + +  TYN ++   GR  +F+    +L+EM + G + ++ ++   +N      +  +A
Sbjct: 454 GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEA 513

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +   M        V   N L++    + K+    +   + LK     NL TY  L+ G
Sbjct: 514 QIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDG 573

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
                 L EA  +  E+  KG KPDV  +N ++ G    G     I L+E MK  G  P 
Sbjct: 574 LSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPT 633

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           +++Y ++I   C +     T  + G                  E    PD L YN ++  
Sbjct: 634 LKTYHLLI-SLCTKEGIELTERLFG------------------EMSLKPDLLVYNGVLHC 674

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
             +    ++A  + K+M+         TYN ++    + G     R + DEM  R   P+
Sbjct: 675 YAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPE 734

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            ++Y +++ G         AY +  EM EKG    V   N+  + L    RS
Sbjct: 735 ADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRS 786



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 24/270 (8%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           AFRF      K G   N  TYN+++  L    +      +L E+  KGL   + T+   +
Sbjct: 548 AFRF-SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLI 606

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRF 344
           + +  A   ++ +A++E M +   K  + T + L+     S   KE   L ++L  +   
Sbjct: 607 SGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI-----SLCTKEGIELTERLFGEMSL 661

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P+L  Y  +L  +    ++ +A  +  +MI+K    D   +N ++ G LK+GK  +   
Sbjct: 662 KPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRS 721

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L + M A+   P   +Y I++   C+    +                 Y   +EM+E+G 
Sbjct: 722 LIDEMNAREMEPEADTYNIIVKGHCEVKDYMSA---------------YVWYREMQEKGF 766

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
             D    N L+  +K +    EA  +  EM
Sbjct: 767 LLDVCIGNELVSGLKEEWRSKEAEIVISEM 796


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 174/370 (47%), Gaps = 32/370 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF--KIAMNAFAAAKE 294
           DK G   N+ TY  ++  L +A      + +L++M + GL   +T    + ++    A  
Sbjct: 41  DKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGL-EPDTLLCNVVLDGLGKANM 99

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
             +A  +F  M      A   T   L+ +LGR K  +EA LLFD+++ R  TP+   YT 
Sbjct: 100 MDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTN 159

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++  +C+   +  A  V  +M+DK   PD    N ++  + + G+   A ++FE MK  G
Sbjct: 160 VIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSG 219

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            + N  S+          NA +  C     G   ++ + Y  + EME RG  P+ +T+N 
Sbjct: 220 VAVNTVSF----------NAMLDCC-----GKAGKVGLAYQFMDEMEARGIKPNSITFNT 264

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  +   K   EA ++ +EM  +G  P + TY  +++++ + GN     +++ +M + G
Sbjct: 265 LINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAG 324

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C  +  +Y +LI  L+   R  +A     +M +KG+             L  A  + VL 
Sbjct: 325 CSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGI-------------LPDAITATVLQ 371

Query: 594 ELAQKMRFSG 603
           +LA K + SG
Sbjct: 372 QLAGKCKLSG 381



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 137/306 (44%), Gaps = 20/306 (6%)

Query: 287 NAFAAAKERK----KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-K 341
           NA  AA  R     K +  F+ ++K+  K    T  C++++L ++     A  L DK+ K
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIK 77

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
               P+     V+L G  +   + EA +++  M   G   D   + I++  L +  +  +
Sbjct: 78  TGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A  LF+ M+ +G +P+  +YT +I  +CK                 R++    +LK+M +
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAG---------------RIESAMVVLKKMLD 182

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           +   PD  T N+LI  +      + A  I++ M +SG      ++N ++    + G   +
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGL 242

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             +  DEM  RG  P+  ++  LI  L     + EAYK L+EM   G+   V  Y     
Sbjct: 243 AYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIE 302

Query: 582 DLSRAG 587
             ++AG
Sbjct: 303 AFAKAG 308



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 455 LLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +L  +++  C    L  NA+I    +  +I K+ DE    ++E+ + G KP  +TY  ++
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDE----FQELDKHGSKPNAYTYKCVI 56

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           +S  + GN  +  ++ D+MI+ G  PD     V++ GL   +   EA K    M  K M 
Sbjct: 57  QSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASM--KSMG 114

Query: 571 APVLDYN 577
            P  DY 
Sbjct: 115 CPADDYT 121


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 177/393 (45%), Gaps = 23/393 (5%)

Query: 233 CWAGDKPG---FAHNSRTYNSMMS---------ILGRAR------QFETMVSMLEEMGEK 274
           C  G+ PG   F    + YN M+S         ++  AR      +FE    ++ EM   
Sbjct: 424 CSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGN 483

Query: 275 GLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           G +    T+   +     A   + A  +F+ M        V T   L++   ++ + K+A
Sbjct: 484 GFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 334 QLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
               D++ +    P + TYT L+  + + K +  A  ++  MI KG  P+V+ +  +++G
Sbjct: 544 HNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDG 603

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC-KQNAAVYTCLITGFGNRRRMDI 451
             K G    A +++  M+     P+V  Y  +      K N   Y  L+ G     ++  
Sbjct: 604 YCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKD 663

Query: 452 VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             DLL+ M   GC P+ + Y+ALI    K  K+ DEA  ++ +MV  G+ P ++TY+ ++
Sbjct: 664 ARDLLETMFVDGCEPNTIVYDALIDGFCKAAKL-DEAQEVFHKMVEHGYNPNVYTYSSLI 722

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
              F+    ++  KV  +M+   C P+   YT +I GL    ++ EAYK +  M EKG K
Sbjct: 723 DRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCK 782

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             V+ Y        +AG+     EL ++M   G
Sbjct: 783 PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 165/363 (45%), Gaps = 38/363 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ ++  L  A + E    + +EM   G++  + T+ I ++ F+ A   K+A
Sbjct: 484 GFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
               + M +   +  V T   L+    ++K    A  LF+ +  +   PN+ TYT L+ G
Sbjct: 544 HNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDG 603

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
           +C+  N+ +A +++  M        +D  FK        P+VV +  +++GL K  K  D
Sbjct: 604 YCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKD 663

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLIT 441
           A  L E M   G  PN   Y  +I  FCK                     N   Y+ LI 
Sbjct: 664 ARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLID 723

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                +R+D+V  +L +M E  C P+ + Y  +I  +      DEA ++   M   G KP
Sbjct: 724 RLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKP 783

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TY  ++  + + G  +   +++ EM  +GC P+  +YTVLI    +     EAY  L
Sbjct: 784 NVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALL 843

Query: 562 EEM 564
           EEM
Sbjct: 844 EEM 846



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 153/371 (41%), Gaps = 20/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+     TYN+++ +  RA + +T   +  EM E GL SM+ F +   A A  K  K   
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGL-SMDEFTLGFFAQALCKVGKWRE 294

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGW 358
           A+  L+ K  F       N ++  L  +   +EA    ++++     PN+ TY +LL G 
Sbjct: 295 AL-SLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGC 353

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
              K L    R+ + MI +G  P     N ++    K    S A KL + M+     P  
Sbjct: 354 LNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGY 413

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK----EMEERGCPPDGLTYNAL 474
             Y I+I   C              G      + ++L +    EM   G   + +   + 
Sbjct: 414 VVYNILIGSICS-------------GGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSF 460

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
            + +      ++A ++  EM+ +GF P   TY+ ++         E    ++ EM   G 
Sbjct: 461 ARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGV 520

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  +YT+LI          +A+ +L+EM+  G +  V+ Y        +A +  V +E
Sbjct: 521 VPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANE 580

Query: 595 LAQKMRFSGKF 605
           L + M   G F
Sbjct: 581 LFELMIAKGCF 591



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 170/423 (40%), Gaps = 64/423 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA------RQF- 261
           L+ +LVV++L  F  +     +FF WAG + G+ H    Y +++ +  R        +F 
Sbjct: 136 LNPDLVVEILS-FLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFL 194

Query: 262 --------ETMVSM-----------------LEEMGEKGLLSMETFKIAMNAFAAAKERK 296
                   E +  +                 LEE+G       +  ++  NA      R 
Sbjct: 195 REIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRA 254

Query: 297 KAVAIFELMNKYKFKAGVD----TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
             +   +L+++   + G+     T+    + L +    +EA  L +  K  F PN   Y 
Sbjct: 255 DKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIE--KEDFVPNTILYN 312

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            ++ G C      EA    N M      P+V  + I+L G L   +     ++  +M A+
Sbjct: 313 KMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAE 372

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+   +  ++  +CK +   Y                Y LLK+ME+  C P  + YN
Sbjct: 373 GCYPSYTIFNSLVHAYCKSDDFSYA---------------YKLLKKMEKCECKPGYVVYN 417

Query: 473 ALI-KLMKIQKMP-----DEAVRIYKEMVRSGFKPTIHTYNMI--MKSYFQTGNYEMGRK 524
            LI  +    ++P     + A + Y EM+ +G    ++  N++   +     G +E   K
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAG--TVLNKVNVVSFARCLCGFGKFEKAYK 475

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  EM+  G  PD ++Y+ +IG L +  R   A+   +EM   G+   V  Y       S
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 585 RAG 587
           +AG
Sbjct: 536 KAG 538



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 148/364 (40%), Gaps = 60/364 (16%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAK 293
             +KP    N  TY +++  L +A + +    +LE M   G   +   +   ++ F  A 
Sbjct: 639 VAEKP----NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAA 694

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENL----------------------------- 324
           +  +A  +F  M ++ +   V T + L++ L                             
Sbjct: 695 KLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYT 754

Query: 325 ----GRSKLPK--EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
               G SK+ K  EA  L   ++ +   PN+ TYT ++ G+ +   + +   ++ EM  K
Sbjct: 755 EMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSK 814

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G  P+ V + +++      G   +A  L E MK      +V SY       CK       
Sbjct: 815 GCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSY-------CK------- 860

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            +I G+  +R   +   LL+E+E+ G  P  L Y  LI         + A+ ++KE++ +
Sbjct: 861 -VIEGY--KREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISA 917

Query: 498 GFKPTI--HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
                   + Y  ++ S+          +++ +MIR G  PD  ++  L+ GLI   R  
Sbjct: 918 SMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWE 977

Query: 556 EAYK 559
           EA +
Sbjct: 978 EALQ 981


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 177/386 (45%), Gaps = 25/386 (6%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGL-LSMETFK 283
           R  FR F W+     +    RT   ++   L +   FE    +L+E+    + +S E F 
Sbjct: 75  RLGFRLFIWS--LKSWHLRCRTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFS 132

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKH 342
           + + A++ A   +KAV  F LM  +  K  +   N +L  L R +    A  ++++ LK 
Sbjct: 133 VLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKC 192

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
              P++ TY +L+ G C+     +A  +++EM D+G  P+ + ++I+L GL +  K  DA
Sbjct: 193 NLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDA 252

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITG 442
            +LF  M+A G + ++ +Y +++  FCK                         Y CLI G
Sbjct: 253 QRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLING 312

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
               RR +  +   ++M      PD + Y  +I+ +  +    EA+ +  EM   G +P 
Sbjct: 313 LFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPD 372

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              YN ++K +   G  +    +  E+ +  C P++++Y++LI G+       +A    +
Sbjct: 373 TICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFK 432

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
           EM + G    V+ +N     L +A R
Sbjct: 433 EMEKLGCLPSVVTFNSLINGLCKANR 458



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 65/379 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y+ ++S L +A++      +  +M   G    + T+ + +N F  +     A
Sbjct: 228 GILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDA 287

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             + +L+ K     GV    CL+  L R++  +EA + + K L+    P++  YT+++ G
Sbjct: 288 FTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRG 347

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +   + EA  +  EM ++G +PD + +N +++G   +G   +A  L   +      PN
Sbjct: 348 LSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPN 407

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
             +Y+I+I   CK           G  N+ +      + KEME+ GC P  +T+N+LI  
Sbjct: 408 NHTYSILICGMCKN----------GLINKAQ-----HIFKEMEKLGCLPSVVTFNSLING 452

Query: 477 ---------------LMKIQKMPD--------------------------------EAVR 489
                           M+I + P                                 +A +
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  ++V SG  P I TYN+++  + + GN     K++ EM  +G  PD  +Y  LI GL 
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572

Query: 550 SQDRSGEAYKYLEEMLEKG 568
              R+ +A +  E+M++KG
Sbjct: 573 RAGRNEDALEIFEQMVKKG 591



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 156/358 (43%), Gaps = 35/358 (9%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y  M+  L +  +    +++L EM E+GL      +   +  F       +A ++   ++
Sbjct: 341 YTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEIS 400

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K+       T + L+  + ++ L  +AQ +F ++ K    P++ T+  L+ G C+   L 
Sbjct: 401 KHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLE 460

Query: 366 EAGRVWNEM---------------IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           EA  ++ +M                DK F  D+ +  +M+E L + G    A KL   + 
Sbjct: 461 EARLLFYQMEIVRKPSLFLRLSQGTDKVF--DIASLQVMMERLCESGMILKAYKLLMQLV 518

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P++R+Y I+I  FCK            FGN   ++  + L KEM+ +G  PD +T
Sbjct: 519 DSGVLPDIRTYNILINGFCK------------FGN---INGAFKLFKEMQLKGHMPDSVT 563

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  LI  +      ++A+ I+++MV+ G  P   TY  IM    +  N  +   VW + +
Sbjct: 564 YGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYL 623

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           R     +D    V+     +++    A + L EM  K     +  Y  F   L +A R
Sbjct: 624 RDFRGWEDEKVRVVAESFDNEELQ-TAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKR 680



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TY+ ++  + +         + +EM + G L S+ TF   +N    A   ++A  +F
Sbjct: 407 NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLF 466

Query: 303 ---ELMNK----YKFKAGVD------TINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNL 348
              E++ K     +   G D      ++  ++E L  S +  +A +LL   +     P++
Sbjct: 467 YQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDI 526

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TY +L+ G+C+  N+  A +++ EM  KG  PD V +  +++GL + G+  DA+++FE 
Sbjct: 527 RTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQ 586

Query: 409 MKAKGPSPNVRSY-TIMIWKFCKQN 432
           M  KG  P   +Y TIM W  C++N
Sbjct: 587 MVKKGCVPESSTYKTIMTWS-CREN 610



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR-SYTIMIWKF------CKQNAAVYTCLIT 441
           M +GL  I  R   I+ + +       P+ R  + + IW        C+    V   +I 
Sbjct: 48  MEDGLKVISSR---IRSYTITSVLQEQPDTRLGFRLFIWSLKSWHLRCR---TVQDLIIG 101

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                   ++ + +L+E++          ++ LI+      M ++AV  +  M     KP
Sbjct: 102 KLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKP 161

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            +  +N+I+    +   + +   V+++M++    PD  +Y +LI GL    ++ +A    
Sbjct: 162 DLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLF 221

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +EM ++G+    + Y+   + L +A + +    L  KMR SG
Sbjct: 222 DEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASG 263


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 176/399 (44%), Gaps = 54/399 (13%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
           F  ++  YN++++ L +AR+    + +L  M   G   S+ T+   ++    + +   A 
Sbjct: 6   FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGW 358
           A+ + M        V T   L++ L +++ P +A Q +   L+    P+L TY  L+ G 
Sbjct: 66  ALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGL 125

Query: 359 CRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C    + +AG V  E MI+ G  PDVV +N  + GL K GK    +++ E M   G SP+
Sbjct: 126 CMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V ++  +I   CK N               R+D  + + K M ERGC PD LTY+ ++  
Sbjct: 186 VVTFCSIISGLCKAN---------------RIDDAFQVFKGMLERGCVPDSLTYSIMLDN 230

Query: 478 MKIQKMPDEAVRIYKEMVRSG-------FKPTIH-------------------------- 504
           +      D    + + MV+SG       + P IH                          
Sbjct: 231 LSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVME 290

Query: 505 --TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             T+N  + +  ++G + + + +   MI  G  P+  SY  +I GL       +A+K   
Sbjct: 291 VYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSR 350

Query: 563 EMLEKGMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMR 600
           +ML+ G   P V+ +N   +   +AGR     +L ++M+
Sbjct: 351 KMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMK 389



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 16/270 (5%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           F  +   Y  L+ G C+ +    A  + + M   G+   VV +  +++GL K G    A 
Sbjct: 6   FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            L + M   G +PNV +YT +I   CK               RR  D +   +K M   G
Sbjct: 66  ALLQKMADAGCAPNVVTYTALIDGLCKA--------------RRPHDAI-QTVKRMLRSG 110

Query: 464 CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           C PD +TYN+LI  L    +M D  + + + M+ SG  P + TYN  +    + G  + G
Sbjct: 111 CEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKG 170

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            ++ +EM R G  PD  ++  +I GL   +R  +A++  + MLE+G     L Y+    +
Sbjct: 171 LEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDN 230

Query: 583 LSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
           LSRA R   ++E+ + M  SG + +S   A
Sbjct: 231 LSRANRLDTVEEVLEHMVKSGHYALSATYA 260



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 194 LDRNMEAV--LDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYN 249
           LD+ +E +  +D  GI+        ++     A R   AF+ F    ++ G   +S TY+
Sbjct: 167 LDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLER-GCVPDSLTYS 225

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKY 308
            M+  L RA + +T+  +LE M + G  ++  T+   ++A   A + + A   +E   + 
Sbjct: 226 IMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEA 285

Query: 309 KFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367
                V T N  +  L RS K P    +L   ++    PNL +Y  ++ G C+  N+ +A
Sbjct: 286 GCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDA 345

Query: 368 GRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMI 425
            ++  +M+D G  KPDV+  N ++ G  K G+ S A +L + MKAK    P+V +Y  MI
Sbjct: 346 WKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMI 405



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 24/253 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+ +S L +A + +  + MLEEM   G+   + TF   ++    A     A  +F+ M
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGM 212

Query: 306 NKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +        T + +L+NL R+ +L    ++L   +K        TY  L+    R  ++
Sbjct: 213 LERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDI 272

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A   + + ++ G   +V  HN  +  L + GK   A  +   M   G  PN+ SY  +
Sbjct: 273 ESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFV 332

Query: 425 I------------WKF---------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           I            WK          CK +   +  LI+GF    R+     LLKEM+ + 
Sbjct: 333 IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKN 392

Query: 464 -CPPDGLTYNALI 475
            C PD +TYN +I
Sbjct: 393 ICVPDVVTYNTMI 405


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 179/385 (46%), Gaps = 26/385 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  ++ +Y+ ++  L +  + +  + +L EM  +G   SM+ +   + A A A+    A
Sbjct: 75  GYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHA 134

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            ++F+ M +            L+  L ++   K+A   F ++ KH   PN+  Y VLL G
Sbjct: 135 SSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHG 194

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    L +A  ++ EM      PDVV +N +L+ + K  +  +  KLFE M+A G  PN
Sbjct: 195 LCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPN 254

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +++ +I   C                    K N   YT LI+G     ++    +L +
Sbjct: 255 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFE 314

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQT 516
           +M +   PPD + YN+LI     +   DEA ++Y+EM   +G +PTI T+N ++  + + 
Sbjct: 315 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKL 374

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G      ++  EM  +G   D  +Y +LI GL    +  EA +  ++M EK      +  
Sbjct: 375 GKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSC 434

Query: 577 NKFAADLSRAG---RSYVLDELAQK 598
             F   L + G   ++Y + E  +K
Sbjct: 435 VSFVGGLCKTGNIDQAYAVFEATRK 459



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 169/361 (46%), Gaps = 17/361 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            A N  TY+S++  L +  + E    +LEEM   G    +  F   M  FA +   +KA 
Sbjct: 6   IAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAR 65

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            +++ M +  +K    + + L+  L +  KL +  ++L + +    TP++  Y+ L+   
Sbjct: 66  EVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRAL 125

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            + + +  A  +++EMI  G  PD +    ++ GL + GK  DA + F+ M   G  PNV
Sbjct: 126 AKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNV 185

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
             Y +++   C                  +++    L  EM+   C PD +TYN L+  +
Sbjct: 186 PVYNVLLHGLCSSG---------------QLEQANTLFAEMKSHSCSPDVVTYNTLLDAV 230

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +  +E  ++++ M  +G+ P + T++ ++    +TG  E   +V+  M+  GC P+ 
Sbjct: 231 CKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNK 290

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +YT LI GL   ++  +A +  E+M +  +    + YN   A   + G     ++L ++
Sbjct: 291 YTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYRE 350

Query: 599 M 599
           M
Sbjct: 351 M 351



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 163/397 (41%), Gaps = 45/397 (11%)

Query: 160 GNNSESEITSVSYKSTADPREIERVCKVIDELF----SLDRNM--EAVLDECGINLSHNL 213
           G     +  S   ++ A  R ++    + DE+       DR M  E +L  C        
Sbjct: 110 GQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLC----QAGK 165

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           V D  ERF+               K G   N   YN ++  L  + Q E   ++  EM  
Sbjct: 166 VKDASERFKQM------------PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKS 213

Query: 274 KGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPK 331
                 + T+   ++A   A+  ++   +FE M    +   V T + L+  L R+ +L K
Sbjct: 214 HSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEK 273

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
             ++    L+    PN  TYT L+ G CR + +++A  ++ +M      PD VA+N ++ 
Sbjct: 274 ALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 333

Query: 392 GLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCK-------------------- 430
           G  K G   +A KL+ E+    G  P + ++  +I  FCK                    
Sbjct: 334 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLA 393

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            ++  Y  LI G     ++D   ++ K+M E+    D ++  + +  +      D+A  +
Sbjct: 394 ADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAV 453

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           ++   +SG  P   T+ ++ +S  + G  E  +K+ +
Sbjct: 454 FEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 17/265 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N+ TY+ ++    +     E+ +V  EM+  G  PDV A N +++G  +      A +++
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G  P+  SY I               LI G     ++D    +L EM  RG  P
Sbjct: 69  QHMVESGYKPDNVSYHI---------------LIHGLAKIGKLDESLKILSEMVMRGQTP 113

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
               Y++L++ +   +  D A  ++ EM+R G  P    +  ++    Q G  +   + +
Sbjct: 114 SMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERF 173

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            +M + GC P+   Y VL+ GL S  +  +A     EM        V+ YN     + +A
Sbjct: 174 KQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKA 233

Query: 587 GRSYVLDELAQKMRFSGKFEVSNVL 611
            R     +L + MR +G   V NV+
Sbjct: 234 RRVEEGCKLFEAMRAAGY--VPNVI 256



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 4/141 (2%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M ++    +  TY+++IK +  +  P+E+ ++ +EM+ +G  P +  +N +M+ + ++ N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E  R+V+  M+  G  PD+ SY +LI GL    +  E+ K L EM+ +G    +  Y+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 579 FAADLSRAGR----SYVLDEL 595
               L++A R    S + DE+
Sbjct: 121 LVRALAKARRVDHASSLFDEM 141



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 3/172 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLL-SMETFKIAMNAFAAAKERKKAVAI 301
           ++  YNS+++   +    +    +  EM G  GL  ++ TF   ++ F    +  +A  +
Sbjct: 324 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 383

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
              M      A   T   L+  L R+    EA  ++ +++ + F  +  +    +GG C+
Sbjct: 384 VAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCK 443

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
             N+ +A  V+      G  P+     I+ E L+K+G+  DA KL E  KA+
Sbjct: 444 TGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKAR 495


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 177/393 (45%), Gaps = 23/393 (5%)

Query: 233 CWAGDKPG---FAHNSRTYNSMMS---------ILGRAR------QFETMVSMLEEMGEK 274
           C  G+ PG   F    + YN M+S         ++  AR      +FE    ++ EM   
Sbjct: 424 CSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGN 483

Query: 275 GLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           G +    T+   +     A   + A  +F+ M        V T   L++   ++ + K+A
Sbjct: 484 GFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 334 QLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
               D++ +    P + TYT L+  + + K +  A  ++  MI KG  P+V+ +  +++G
Sbjct: 544 HNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDG 603

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC-KQNAAVYTCLITGFGNRRRMDI 451
             K G    A +++  M+     P+V  Y  +      K N   Y  L+ G     ++  
Sbjct: 604 YCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKD 663

Query: 452 VYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             DLL+ M   GC P+ + Y+ALI    K  K+ DEA  ++ +MV  G+ P ++TY+ ++
Sbjct: 664 ARDLLETMFVDGCEPNTIVYDALIDGFCKAAKL-DEAQEVFHKMVERGYNPNVYTYSSLI 722

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
              F+    ++  KV  +M+   C P+   YT +I GL    ++ EAYK +  M EKG K
Sbjct: 723 DRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCK 782

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             V+ Y        +AG+     EL ++M   G
Sbjct: 783 PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 165/363 (45%), Gaps = 38/363 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  ++ TY+ ++  L  A + E    + +EM   G++  + T+ I ++ F+ A   K+A
Sbjct: 484 GFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQA 543

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
               + M +   +  V T   L+    ++K    A  LF+ +  +   PN+ TYT L+ G
Sbjct: 544 HNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDG 603

Query: 358 WCRVKNLMEAGRVWNEM--------IDKGFK--------PDVVAHNIMLEGLLKIGKRSD 401
           +C+  N+ +A +++  M        +D  FK        P+VV +  +++GL K  K  D
Sbjct: 604 YCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKD 663

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLIT 441
           A  L E M   G  PN   Y  +I  FCK                     N   Y+ LI 
Sbjct: 664 ARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLID 723

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                +R+D+V  +L +M E  C P+ + Y  +I  +      DEA ++   M   G KP
Sbjct: 724 RLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKP 783

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TY  ++  + + G  +   +++ EM  +GC P+  +YTVLI    +     EAY  L
Sbjct: 784 NVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALL 843

Query: 562 EEM 564
           EEM
Sbjct: 844 EEM 846



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 153/371 (41%), Gaps = 20/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+     TYN+++ +  RA + +T   +  EM E GL SM+ F +   A A  K  K   
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGL-SMDEFTLGFFAQALCKVGKWRE 294

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGW 358
           A+  L+ K  F       N ++  L  +   +EA    ++++     PN+ TY +LL G 
Sbjct: 295 AL-SLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGC 353

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
              K L    R+ + MI +G  P     N ++    K    S A KL + M+     P  
Sbjct: 354 LNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGY 413

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK----EMEERGCPPDGLTYNAL 474
             Y I+I   C              G      + ++L +    EM   G   + +   + 
Sbjct: 414 VVYNILIGSICS-------------GGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSF 460

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
            + +      ++A ++  EM+ +GF P   TY+ ++         E    ++ EM   G 
Sbjct: 461 ARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGV 520

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  +YT+LI          +A+ +L+EM+  G +  V+ Y        +A +  V +E
Sbjct: 521 VPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANE 580

Query: 595 LAQKMRFSGKF 605
           L + M   G F
Sbjct: 581 LFELMIAKGCF 591



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 170/423 (40%), Gaps = 64/423 (15%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA------RQF- 261
           L+ +LVV++L  F  +     +FF WAG + G+ H    Y +++ +  R        +F 
Sbjct: 136 LNPDLVVEILS-FLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFL 194

Query: 262 --------ETMVSM-----------------LEEMGEKGLLSMETFKIAMNAFAAAKERK 296
                   E +  +                 LEE+G       +  ++  NA      R 
Sbjct: 195 REIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRA 254

Query: 297 KAVAIFELMNKYKFKAGVD----TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
             +   +L+++   + G+     T+    + L +    +EA  L +  K  F PN   Y 
Sbjct: 255 DKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIE--KEDFVPNTILYN 312

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            ++ G C      EA    N M      P+V  + I+L G L   +     ++  +M A+
Sbjct: 313 KMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAE 372

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+   +  ++  +CK +   Y                Y LLK+ME+  C P  + YN
Sbjct: 373 GCYPSYTIFNSLVHAYCKSDDFSYA---------------YKLLKKMEKCECKPGYVVYN 417

Query: 473 ALI-KLMKIQKMP-----DEAVRIYKEMVRSGFKPTIHTYNMI--MKSYFQTGNYEMGRK 524
            LI  +    ++P     + A + Y EM+ +G    ++  N++   +     G +E   K
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAG--TVLNKVNVVSFARCLCGFGKFEKAYK 475

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  EM+  G  PD ++Y+ +IG L +  R   A+   +EM   G+   V  Y       S
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 585 RAG 587
           +AG
Sbjct: 536 KAG 538



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 139/324 (42%), Gaps = 21/324 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+  Y++++    +A + +    +  +M E+G   ++ T+   ++     K     
Sbjct: 675 GCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLV 734

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M +      +     +++ L +     EA  L   ++ +   PN+ TYT ++ G
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   + +   ++ EM  KG  P+ V + +++      G   +A  L E MK      +
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKH 854

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY       CK        +I G+  +R   +   LL+E+E+ G  P  L Y  LI  
Sbjct: 855 VSSY-------CK--------VIEGY--KREFILSLGLLEEVEKNGSAPTILLYKVLIDN 897

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTI--HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                  + A+ ++KE++ +    T   + Y  ++ S+      +   +++ +MIR G  
Sbjct: 898 FVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVI 957

Query: 536 PDDNSYTVLIGGLISQDRSGEAYK 559
           PD  ++  L+ GLI   R  EA +
Sbjct: 958 PDLGTFVHLLMGLIRVRRWEEALQ 981


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 197/453 (43%), Gaps = 40/453 (8%)

Query: 167 ITSVSYKSTADPREIERVCKVIDEL-----FSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           + +VS  +   P    R C     +      SL++    VL    I +S    +  L  +
Sbjct: 5   LNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFTLPNW 64

Query: 222 RHAR----------RPAF---RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +  +            AF    F    G KP     ++    ++  L +A +    + ++
Sbjct: 65  KTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQ----LLYDLCKACKMRKAIKVM 120

Query: 269 EEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
           E M   G++    ++   +++         A+ + + M +Y +     T N L+  L   
Sbjct: 121 EMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMH 180

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
             L +  QLL   ++    PN  TY+ LL    + +   EA ++ +E+I KG +P++V++
Sbjct: 181 GNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSY 240

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N++L GL K G+  DAI+LF  + +KG SPNV SY I++   C               N 
Sbjct: 241 NVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLC---------------NE 285

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R +    LL EM      P  +TYN LI  + +    + A+ + +EM+R+ FKPT  +Y
Sbjct: 286 GRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSY 345

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N I+    + G  ++  K  D+M+ R C P++ +Y   I  L  +    EA+  ++ +  
Sbjct: 346 NPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNA-IATLCEEGMVQEAFSIIQSLGN 404

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           K   +    Y      L R G +Y   +L  +M
Sbjct: 405 KQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEM 437



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 156/350 (44%), Gaps = 30/350 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM----GEKGLLSMETFKIAMNAFAAAKER 295
           G   N+ TY+ ++    + R  +    +L+E+    GE  L+S   + + +         
Sbjct: 197 GLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVS---YNVLLTGLCKEGRT 253

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
           + A+ +F  +    F   V + N LL +L      +EA +L  ++     +P+  TY +L
Sbjct: 254 EDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNIL 313

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +G          A  V  EMI   FKP   ++N ++  L K GK    +K  + M  +  
Sbjct: 314 IGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHC 373

Query: 415 SPNVRSYTIMIWKFC-----------------KQNAAV---YTCLITGFGNRRRMDIVYD 454
           +PN  +Y   I   C                 KQ+++    Y  +IT    +      + 
Sbjct: 374 NPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQ 432

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LL EM + G  PD  TY++LI+ + ++ M +EA+ I+  M  +  KP    YN ++    
Sbjct: 433 LLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTENYNSLILGCC 491

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           ++   ++   V++ M+ +G  P++ +YT+L+ G+I +     A K L E+
Sbjct: 492 KSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLREL 541



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 115/291 (39%), Gaps = 58/291 (19%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAM 286
           A R F     K GF+ N  +YN ++  L    ++E    +L EM G++   S  T+ I +
Sbjct: 256 AIRLFRELPSK-GFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILI 314

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFT 345
            + A     + A+ + E M + +FK    + N ++ +L +  KL    + L   +     
Sbjct: 315 GSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCN 374

Query: 346 PNLTTYT----------------------------------VLLGGWCRVKNLMEAGRVW 371
           PN  TY                                   +++   CR  N   A ++ 
Sbjct: 375 PNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLL 434

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
            EM   GF PD   ++ ++ GL   G  ++AI++F VM+     P+  +Y  +I   CK 
Sbjct: 435 YEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTENYNSLILGCCKS 493

Query: 432 --------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
                               N   YT L+ G  + + MD+   +L+E++ R
Sbjct: 494 RRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQLR 544


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 175/371 (47%), Gaps = 31/371 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++  YN ++++L    + + + S+  EM ++G+   + T    + A   A + + A
Sbjct: 155 GVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTA 214

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           V + E M+ +       T   L++  +    +    ++    ++   +P   T  VL+ G
Sbjct: 215 VLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLING 274

Query: 358 WCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           +C++  + +A G +  E+ D GF+PD V +N  +  L + G  S A+K+ ++M  +G  P
Sbjct: 275 YCKMGRVEDALGYIQKEIAD-GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDP 333

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V +Y  +I    K                  +D    ++ +M +RGC PD  T+N LI 
Sbjct: 334 DVFTYNTVINCLSKNG---------------ELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  Q   +EA+ + +E+   G  P ++T+N+++ +  + G+  +G ++++EM   GC P
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAP 438

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D+ +Y +LI  L S  +   A   L+EM   G     + YN             ++D L 
Sbjct: 439 DEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNT------------IIDALC 486

Query: 597 QKMRFSGKFEV 607
           ++MR     EV
Sbjct: 487 KQMRIEEAEEV 497



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A+ + +LM +      V T N ++  L ++    EA+ + +++  R   P+ TT+  L+ 
Sbjct: 319 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C    L EA  +  E+  KG  PDV   NI++  L K+G     I+LFE MK+ G +P
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAP 438

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  +Y I+I   C     V                  DLLKEME  GCP   +TYN +I 
Sbjct: 439 DEVTYNILIDHLCSMGKLVNA---------------LDLLKEMESNGCPRSTVTYNTIID 483

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  Q   +EA  ++ +M   G   +  T+N ++    +    +   ++ ++M++ G  P
Sbjct: 484 ALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQP 543

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
            + +Y  ++     Q    +A   LE M   G +  V+ Y      L +AGR+ V  +L 
Sbjct: 544 SNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLL 603

Query: 597 QKMRFSG 603
           + MR  G
Sbjct: 604 RGMRIKG 610



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 28/373 (7%)

Query: 240 GFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           GF  +  TYN+ +  L +    +   + M  ML+E  +  +    T+   +N  +   E 
Sbjct: 295 GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVF---TYNTVINCLSKNGEL 351

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A  I   M          T N L+  L      +EA  L  +L  +  +P++ T+ +L
Sbjct: 352 DEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNIL 411

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+V +     R++ EM   G  PD V +NI+++ L  +GK  +A+ L + M++ G 
Sbjct: 412 INALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGC 471

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
             +  +Y  +I   CKQ                    +A  +  LI G    +R+D   +
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L+++M + G  P  +TYN+++     Q    +A  I + M  +GF+  + TY  ++    
Sbjct: 532 LIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLC 591

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  ++  K+   M  +G  P   +Y  +I  L  ++   +A     EM E G     L
Sbjct: 592 KAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDAL 651

Query: 575 DYNKFAADLSRAG 587
            Y      L R G
Sbjct: 652 TYKIVFRGLCRGG 664



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 162/379 (42%), Gaps = 24/379 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ T+N+++  L    + E  + +  E+  KGL   + TF I +NA     +    
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +FE M          T N L+++L    KL     LL +   +    +  TY  ++  
Sbjct: 425 IRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDA 484

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA  V+++M   G     V  N +++GL K  +  DA +L E M  +G  P+
Sbjct: 485 LCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPS 544

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  ++  +CKQ            G+ ++     D+L+ M   G   D +TY  LI  
Sbjct: 545 NITYNSILTHYCKQ------------GDLKK---AADILETMTANGFEIDVVTYGTLING 589

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +        A+++ + M   G +PT   YN +++S F+  N      ++ EM   G  PD
Sbjct: 590 LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPD 649

Query: 538 DNSYTVLIGGLISQDRSG----EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             +Y ++  GL    R G    EA+ +L EM+ KG       +   A  L   G    L 
Sbjct: 650 ALTYKIVFRGLC---RGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLI 706

Query: 594 ELAQKMRFSGKFEVSNVLA 612
              + +    KF  S+V A
Sbjct: 707 SAIELIIEKAKFRESDVSA 725



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 55/289 (19%)

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGL-----LKI-----------GKRSDAIKLFEVMKAKG 413
           V N++   G + D   +N +L  L     +K+           G + D + L  ++KA  
Sbjct: 147 VRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALC 206

Query: 414 PSPNVRSYTIMIWKFCKQNAA----VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
            +  VR+  +M+ +      A     +T L+ GF     ++    +  +M E GC P  +
Sbjct: 207 RAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRV 266

Query: 470 TYNALIK-----------LMKIQK------MPDE------------------AVRIYKEM 494
           T N LI            L  IQK       PD+                  A+++   M
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM 326

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           ++ G  P + TYN ++    + G  +  + + ++M+ RGC PD  ++  LI  L SQ+R 
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EA     E+  KG+   V  +N     L + G  ++   L ++M+ SG
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG 435



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 49/239 (20%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           D  G + ++ T+N+++  L +A++ +    ++E+M ++GL  S  T+   +  +    + 
Sbjct: 502 DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA  I E M    F+  V                                   TY  L+
Sbjct: 562 KKAADILETMTANGFEIDV----------------------------------VTYGTLI 587

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+      A ++   M  KG +P   A+N +++ L +     DA+ LF  M   G  
Sbjct: 588 NGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEP 647

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           P+  +Y I+    C+    +                 +D L EM  +G  P+  ++  L
Sbjct: 648 PDALTYKIVFRGLCRGGGPIKE--------------AFDFLVEMVNKGFMPEFSSFRML 692



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
           AVY  +I   G     D++  L++EM   G         + ++     +  D+AV + + 
Sbjct: 90  AVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRN 149

Query: 494 MVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            + + G +     YN ++    +    ++   V++EM  RG  PD  +   LI  L    
Sbjct: 150 QLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAH 209

Query: 553 RSGEAYKYLEEM 564
           +   A   LEEM
Sbjct: 210 QVRTAVLMLEEM 221


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 175/406 (43%), Gaps = 70/406 (17%)

Query: 228 AFRFFCWAG-DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286
           A + F +AG   PGF HN  TY+S++  L RAR F+ + S++ ++      S    K   
Sbjct: 63  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRN----SYPPIKCGE 118

Query: 287 NAF-------AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
           N F         A   + ++ IF  +  +  K  V ++N LL  L +++       +F  
Sbjct: 119 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN 178

Query: 340 LKHRF-------------------------------------TPNLTTYTVLLGGWCRVK 362
            K  F                                      PNL TYT +LGG+    
Sbjct: 179 SKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARG 238

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           ++  A RV  EM+D+G+ PD + + ++++G  K+G+ S+A  + + M+     PN  +Y 
Sbjct: 239 DMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYG 298

Query: 423 IMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           +MI   CK+                    ++++   +I       ++D    L ++M + 
Sbjct: 299 VMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 358

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            C PD    + LI  +  +    EA +++ E  + G  P++ TYN ++    + G     
Sbjct: 359 NCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDK-GSIPSLLTYNTLIAGMCEKGELTEA 417

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            ++WD+M  R C P+  +Y VLI GL       E  + LEEMLE G
Sbjct: 418 GRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESG 463



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI-AMNAFAAAKERKKAVAIF 302
           N  TY  M+  L + ++     +M +EM ++  +   +     ++A     +  +A  ++
Sbjct: 293 NEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLW 352

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
             M K         ++ L+  L +     EA+ LFD+      P+L TY  L+ G C   
Sbjct: 353 RKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSLLTYNTLIAGMCEKG 412

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            L EAGR+W++M ++  KP+   +N+++EGL K G   + +++ E M   G  PN  ++ 
Sbjct: 413 ELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFL 472

Query: 423 IMI 425
           I+ 
Sbjct: 473 ILF 475


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 169/356 (47%), Gaps = 24/356 (6%)

Query: 220 RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR-ARQFETMVSMLEEMGEKGLLS 278
           R+R A    F+     G KP       TYN ++++ G+    +  +  + E M   G+L 
Sbjct: 48  RYREAVM-VFKKMEEEGCKPTLI----TYNVILNVYGKMGMPWNKITGLFEGMKNAGILP 102

Query: 279 ME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLL 336
            E T+   +         ++A A+FE M    F     T N LL+  G+S+  KEA ++L
Sbjct: 103 DEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVL 162

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +   +  +P++ TY  L+  + R   L EA  + N+M+++G K DV  +  ML G ++ 
Sbjct: 163 REMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRT 222

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           GK   A+++FE M+  G               CK N   +  LI   GNR +   +  + 
Sbjct: 223 GKDESAMRVFEEMRTAG---------------CKPNICTFNALIKMHGNRGKFAEMMKVF 267

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +E++   C PD +T+N L+ +     M  E   ++KEM R GF P   TYN ++ +Y + 
Sbjct: 268 EEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRC 327

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           G+++    ++  M+  G  PD ++Y  ++  L       ++ K L EM + GM  P
Sbjct: 328 GSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEM-QDGMCKP 382



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 178/432 (41%), Gaps = 63/432 (14%)

Query: 209 LSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +++N ++DV  + R  +      R     G  P       TYNS++S   R    E  + 
Sbjct: 140 VTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIV----TYNSLISAYARDGLLEEAME 195

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  +M E+G+ L + T+   ++ F    + + A+ +FE M     K  + T N L++  G
Sbjct: 196 LKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHG 255

Query: 326 RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                 E   +F+++K     P++ T+  LL  + +     E   V+ EM   GF P+  
Sbjct: 256 NRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERD 315

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------WK--------- 427
            +N ++    + G    A+ +++ M   G +P++ +Y  ++        W+         
Sbjct: 316 TYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEM 375

Query: 428 ---FCKQNAAVYTCLITGFGNRRRMDIVY----------------------------DLL 456
               CK N   +  L+  + N + +  +                             DLL
Sbjct: 376 QDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLL 435

Query: 457 KEMEE-------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
            E E        +G  PD  T NA+I +   ++M  +   I   M  SGF P++ TYN +
Sbjct: 436 LEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSL 495

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           M  + Q+ N+E   +V  E++ +G  PD  SY  +I       R  EA     EM E G+
Sbjct: 496 MYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGL 555

Query: 570 KAPVLDYNKFAA 581
              V+ YN F A
Sbjct: 556 IPDVITYNTFVA 567



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 155/355 (43%), Gaps = 22/355 (6%)

Query: 238 KPGFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA-AK 293
           K GF  +   Y S+++     GR R+   +   +EE G K  L   T+ + +N +     
Sbjct: 26  KDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLI--TYNVILNVYGKMGM 83

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
              K   +FE M          T N L+    R  L +EA  +F+ +K   F P+  TY 
Sbjct: 84  PWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYN 143

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            LL  + + + + EA  V  EM   G  P +V +N ++    + G   +A++L   M  +
Sbjct: 144 TLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVER 203

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G   +V +YT M+               +GF    + +    + +EM   GC P+  T+N
Sbjct: 204 GIKLDVFTYTAML---------------SGFVRTGKDESAMRVFEEMRTAGCKPNICTFN 248

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALIK+   +    E +++++E+      P I T+N ++  + Q G       V+ EM R 
Sbjct: 249 ALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRV 308

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           G  P+ ++Y  LI          +A    + ML+ G+   +  YN   A L+R G
Sbjct: 309 GFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGG 363



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 22/309 (7%)

Query: 317 INCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           +  ++  LG+  K+   A LL +  K  F P++  YT L+          EA  V+ +M 
Sbjct: 1   VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMI-----WKFC 429
           ++G KP ++ +N++L    K+G   + I  LFE MK  G  P+  +Y  +I         
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLY 120

Query: 430 KQNAAV---------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           ++ AAV               Y  L+  +G  RR+    ++L+EME  GC P  +TYN+L
Sbjct: 121 EEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSL 180

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I       + +EA+ +  +MV  G K  + TY  ++  + +TG  E   +V++EM   GC
Sbjct: 181 ISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGC 240

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++  LI    ++ +  E  K  EE+        ++ +N   A   + G    +  
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSG 300

Query: 595 LAQKMRFSG 603
           + ++M+  G
Sbjct: 301 VFKEMKRVG 309



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 153/346 (44%), Gaps = 30/346 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++++ G+      +  + +EM   G +   +T+   ++A++      +A+A+++ M
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRM 340

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNL 364
                   + T N +L  L R  L ++++ +  +++     PN  T+  LL  +   K +
Sbjct: 341 LDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEI 400

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD----AIKLFEVMKAKGPSPNVRS 420
                +  E+     +P    H ++L+ L+ +  + D    A + F  +K KG SP++ +
Sbjct: 401 GRMLALAEEICSGVIEP----HAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLST 456

Query: 421 YTIMI---------------WKFCKQNA-----AVYTCLITGFGNRRRMDIVYDLLKEME 460
              MI                 F K++      A Y  L+         +   ++LKE+ 
Sbjct: 457 LNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEIL 516

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G  PD ++YN +I          EA  I+ EM  SG  P + TYN  + SY     +E
Sbjct: 517 AKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFE 576

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
               V   MI+ GC P+ N+Y  +I G    +R  +A K++  + E
Sbjct: 577 EAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHE 622



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 116/265 (43%), Gaps = 21/265 (7%)

Query: 155 DGECDGNNSESEITSVSY-KSTADPREIERVCKVIDELFSLDRNMEAVLDE--CGINLSH 211
           DG C  N    E+T  S   + A+ +EI R+  + +E+ S      AVL +    +N   
Sbjct: 377 DGMCKPN----ELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC 432

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+++    F   +R             GF+ +  T N+M++I GR +       +L  M
Sbjct: 433 DLLLEAERAFLELKRK------------GFSPDLSTLNAMIAIYGRRQMVTKTNEILNFM 480

Query: 272 GEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
            E G   S+ T+   M   + ++  +++  + + +     K  + + N ++    R+   
Sbjct: 481 KESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRM 540

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           KEA  +F +++     P++ TY   +  +       EA  V   MI  G KP+   +N +
Sbjct: 541 KEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSV 600

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGP 414
           ++G  K+ +R DAIK    +    P
Sbjct: 601 IDGYCKLNRRDDAIKFISSLHELDP 625


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 24/397 (6%)

Query: 220 RFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR-ARQFETMVSMLEEMGEKGLLS 278
           R+R A    F+     G KP       TYN ++++ G+    +  MV +++ M   G+  
Sbjct: 215 RYREAVM-VFKKMEEVGCKPTLI----TYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAP 269

Query: 279 ME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
              T+   ++        ++A  + + M    F     T N LL+  G+S+  KEA  + 
Sbjct: 270 DSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVL 329

Query: 338 DKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +++ +   P++ TY  L+  + R   L +A  + N+M++KG KPDV  +  +L G  K 
Sbjct: 330 QEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKA 389

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           GK   A+++FE M+ +G               CK N   +  LI   GNR +   +  + 
Sbjct: 390 GKDKAAVQIFEEMRNEG---------------CKPNICTFNALIKMHGNRGKFTEMMKVF 434

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           ++++   C PD +T+N L+ +     M  E   ++KEM R+GF P   T+N ++ SY + 
Sbjct: 435 EDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRC 494

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G+++    V+  M+  G  PD +SY  ++  L       ++ K L EM +   K   L Y
Sbjct: 495 GSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTY 554

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLAR 613
                  +       +  LA+++ +SG  E   VL +
Sbjct: 555 CSLLHAYANGKEIERMCALAEEI-YSGIIEPRAVLLK 590



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 185/430 (43%), Gaps = 59/430 (13%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++DV  + R ++          G+  G   +  TYNS++S   R    E  + + 
Sbjct: 307 VTYNALLDVYGKSRRSKEAMEVLQEMEGN--GCPPSIVTYNSLISAYARDGLLEDALELK 364

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
            +M EKG+   + T+   ++ F  A + K AV IFE M     K  + T N L++  G R
Sbjct: 365 NQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNR 424

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            K  +  ++  D    + +P++ T+  LL  + +     E   V+ EM   GF P+    
Sbjct: 425 GKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 484

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI--------WKF---------- 428
           N ++    + G    A+ +++ M   G +P++ SY  ++        WK           
Sbjct: 485 NTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKD 544

Query: 429 --CKQNAAVYTCLITGFGNRRRMD-------IVY---------------------DLLKE 458
             CK N   Y  L+  + N + ++        +Y                     DLL E
Sbjct: 545 GRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLME 604

Query: 459 ME-------ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            E       +RG  PD  T NA++ +   ++M  +A  I   M R GF P++ TYN +M 
Sbjct: 605 TERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMY 664

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y ++ N+E   ++  E++ +G  PD  SY  +I       R  +A + L EM E G   
Sbjct: 665 MYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAP 724

Query: 572 PVLDYNKFAA 581
            ++ YN F A
Sbjct: 725 DIITYNTFIA 734



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 171/386 (44%), Gaps = 27/386 (6%)

Query: 228 AFRFFCWAGDK--PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKI 284
           A R F W  ++       N      ++SILG+  +     S+L  + + G  + +  +  
Sbjct: 146 ALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTS 205

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHR 343
            + AF +    ++AV +F+ M +   K  + T N +L   G+  +P    + L D++K  
Sbjct: 206 MITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSA 265

Query: 344 -FTPNLTTYTVLLGGWCRVKNLME-AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
              P+  TY  L+   CR  NL E A  V  EM   GF PD V +N +L+   K  +  +
Sbjct: 266 GIAPDSYTYNTLIS-CCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKE 324

Query: 402 AIKLFEVMKAKGPSPNVRSYTI--------------------MIWKFCKQNAAVYTCLIT 441
           A+++ + M+  G  P++ +Y                      M+ K  K +   YT L++
Sbjct: 325 AMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLS 384

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           GF    +      + +EM   GC P+  T+NALIK+   +    E +++++++      P
Sbjct: 385 GFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSP 444

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            I T+N ++  + Q G       V+ EM R G  P+ +++  LI          +A    
Sbjct: 445 DIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVY 504

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAG 587
           + MLE G+   +  YN   A L+R G
Sbjct: 505 KRMLEAGVNPDLSSYNAVLAALARGG 530



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 143/310 (46%), Gaps = 24/310 (7%)

Query: 317 INCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           I  ++  LG+  ++   A LL +  K  F  ++  YT ++  +       EA  V+ +M 
Sbjct: 168 IAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKME 227

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--- 431
           + G KP ++ +N++L    K+G   +  + L + MK+ G +P+  +Y  +I   C++   
Sbjct: 228 EVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLI-SCCRRGNL 286

Query: 432 ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                             +   Y  L+  +G  RR     ++L+EME  GCPP  +TYN+
Sbjct: 287 YEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNS 346

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI       + ++A+ +  +MV  G KP + TY  ++  + + G  +   ++++EM   G
Sbjct: 347 LISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEG 406

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C P+  ++  LI    ++ +  E  K  E++        ++ +N   +   + G    + 
Sbjct: 407 CKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVS 466

Query: 594 ELAQKMRFSG 603
            + ++M+ +G
Sbjct: 467 GVFKEMKRAG 476



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 52/355 (14%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++S+ G+      +  + +EM   G +   +TF   +++++      +A+A+++ M
Sbjct: 448 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 507

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKN- 363
            +      + + N +L  L R  L K+++ +  ++K  R  PN  TY  LL  +   K  
Sbjct: 508 LEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEI 567

Query: 364 ----------------------------------LMEAGRVWNEMIDKGFKPDVVAHNIM 389
                                             LME  R + E+  +GF PD+   N M
Sbjct: 568 ERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAM 627

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           +    +    + A ++ + MK  G +P++ +Y  +++ + +              N  R 
Sbjct: 628 VSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRS------------ANFERS 675

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           +   ++L+E+  +G  PD ++YN +I          +A R+  EM  SG  P I TYN  
Sbjct: 676 E---EILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           + SY     +     V   MI+ GC P+ ++Y  ++      +R  EA  ++  +
Sbjct: 733 IASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 787



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 114/237 (48%), Gaps = 23/237 (9%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMG----EKGLLSMETFKIAMNAFAAAKERKKAV 299
           N  TY S++      ++ E M ++ EE+     E   + ++T  +  +      E ++A 
Sbjct: 550 NELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERA- 608

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
             F  + +  F   + T+N ++   GR ++  +A  + D +K   FTP+LTTY  L+  +
Sbjct: 609 --FLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMY 666

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            R  N   +  +  E++ KG +PD++++N ++    + G+  DA ++   M+  GP+P++
Sbjct: 667 SRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDI 726

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +Y   I  +   +  V             +D+V  ++K     GC P+  TYN+++
Sbjct: 727 ITYNTFIASYAADSMFV-----------EAIDVVCYMIK----HGCKPNQSTYNSIV 768



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 54/282 (19%)

Query: 155 DGECDGNNSESEITSVSY-KSTADPREIERVCKVIDELFSLDRNMEAVLDE--CGINLSH 211
           DG C  N    E+T  S   + A+ +EIER+C + +E++S      AVL +    +N   
Sbjct: 544 DGRCKPN----ELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKC 599

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+++    F   R            + GF+ +  T N+M+SI GR RQ   MV+     
Sbjct: 600 DLLMETERAFLELR------------QRGFSPDITTLNAMVSIYGR-RQ---MVA----- 638

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLP 330
                                    KA  I + M +  F   + T N L+    RS    
Sbjct: 639 -------------------------KANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFE 673

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +  ++L + L     P++ +Y  ++  +CR   + +A RV +EM + G  PD++ +N  +
Sbjct: 674 RSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFI 733

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
                     +AI +   M   G  PN  +Y  ++  +CK N
Sbjct: 734 ASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLN 775


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 183/405 (45%), Gaps = 55/405 (13%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            TY  ++  L +       + M  EM   G+L  +  +   M+        K+A+  F+ M
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                  A V T N L+  L R+ L KE     + +  R F+P+  T+T+L+ G C+   +
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 365  MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             EA ++   M  KG +PD++ +N ++ GL  +G+  DA KLFE +  +G   NV SY I+
Sbjct: 1207 GEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266

Query: 425  IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-------KL 477
            I  +CK                +++D  +   +EM  +G  P  +TYN LI       ++
Sbjct: 1267 INGYCKD---------------QKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRV 1311

Query: 478  MKIQKM----------------------------PDEAVRIYKEMVRSGFKPTIHTYNMI 509
               QK+                             +EA+ +++ + ++  KP I  ++++
Sbjct: 1312 RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSIL 1371

Query: 510  MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +    + G  E   K +DE+ + G  PD  +Y +LI GL ++    EA K L +M EKG 
Sbjct: 1372 LDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 1431

Query: 570  KAPVLDYNKFAADLSRAGRSYVLDELAQKMR---FSGKFEVSNVL 611
                + +N    +L +    +   +L ++MR   FS    V+++L
Sbjct: 1432 LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSML 1476



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 298  AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            AV +F+ M K        T   L+  L +++    A  L +K+K     ++ TY +++  
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDA 1094

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             C+     EA  +++EMI  G  PDVV ++ +++GL + G+  +A++ F+ M+ +G S +
Sbjct: 1095 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISAD 1154

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            V  YT             Y  LI G         V   L  M +RG  PD  T+  LI  
Sbjct: 1155 V--YT-------------YNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 1199

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
            +  +    EA +I + M   G +P I TYN +M      G  E   K+++ +  RG   +
Sbjct: 1200 LCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLN 1259

Query: 538  DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
              SY +LI G     +  EA+++ EEM  KG+K   + YN     L ++GR     +L  
Sbjct: 1260 VFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFV 1319

Query: 598  KMRFSGKF 605
            +M+  G+F
Sbjct: 1320 EMQTCGQF 1327



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 24/354 (6%)

Query: 214  VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
            ++D L RF   +  A  FF     + G + +  TYNS++  L RA  ++ +   L  M +
Sbjct: 1126 LMDGLCRFGRLKE-ALEFFKEMEGR-GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 1183

Query: 274  KGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
            +G      TF I ++      +  +A  I ELM     +  + T N L+  L      ++
Sbjct: 1184 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLED 1243

Query: 333  AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            A  LF+ L  R    N+ +Y +L+ G+C+ + + EA R + EM  KG KP  V +N ++ 
Sbjct: 1244 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIG 1303

Query: 392  GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
             L + G+   A KLF  M+  G    + +Y +++   CK                     
Sbjct: 1304 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKP 1363

Query: 432  NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
            N  V++ L+ G     +++  +    E+ + G  PD + YN LI  +  + M  EAV++ 
Sbjct: 1364 NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLL 1423

Query: 492  KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
             +M   G  P   T+N+I+++  +        ++ +EM  R   PD+   ++L+
Sbjct: 1424 WQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 22/295 (7%)

Query: 315  DTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            DT N LL ++ +         ++ K+      P+L T  +L+   C ++ +     V+  
Sbjct: 947  DTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGG 1006

Query: 374  MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-- 431
             + +GF+PD V    +++G+       DA++LF+ M  KG   + ++Y I+I   CK   
Sbjct: 1007 FLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARK 1066

Query: 432  -----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                             +   Y  +I             D+  EM   G  PD + Y++L
Sbjct: 1067 TGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 1126

Query: 475  IK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            +  L +  ++  EA+  +KEM   G    ++TYN ++    + G ++      + M+ RG
Sbjct: 1127 MDGLCRFGRL-KEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 534  CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              PD  ++T+LI GL  + + GEA + LE M  KG +  +L YN     L   G+
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ 1240



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 115/268 (42%), Gaps = 52/268 (19%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            TYN++M+ L    Q E    + E + ++G+ L++ ++ I +N +   ++  +A   FE M
Sbjct: 1227 TYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEM 1286

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL------------------------- 340
                 K    T N L+  L +S   + AQ LF ++                         
Sbjct: 1287 RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHL 1346

Query: 341  -----------KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
                       K    PN+  +++LL G CR   L EA + ++E+   G +PD +A+NI+
Sbjct: 1347 EEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNIL 1406

Query: 390  LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
            + GL   G  S+A+KL   M+ KG  P+  ++ ++I    K+N                +
Sbjct: 1407 INGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKEN---------------EI 1451

Query: 450  DIVYDLLKEMEERGCPPDGLTYNALIKL 477
                 LL+EM  R   PD    + L+ L
Sbjct: 1452 HEAIQLLEEMRNRNFSPDEAVTSMLLCL 1479



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 59/118 (50%)

Query: 490  IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            +Y+++   G +P ++T N+++           G  V+   ++RG  PD  + T L+ G+ 
Sbjct: 968  MYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVW 1027

Query: 550  SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
             ++   +A +  +EM +KG+      Y      L +A ++ +  +L +KM+ + K +V
Sbjct: 1028 MENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDV 1085


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 20/381 (5%)

Query: 224 ARRPAFRF---FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSM 279
           ARR  +     FC   D  G  HN  T N M++   R R+     S++    + G   + 
Sbjct: 80  ARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNT 139

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            TF   +N F       +AVA+ + M + K++  V T+N L+  L       EA +L D+
Sbjct: 140 ITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDR 199

Query: 340 L-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           + K+    N  TY  +L   C+  N   A  ++ +M ++  K  VV ++I+++ L K G 
Sbjct: 200 MVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGN 259

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
             DA+ LF  M+ KG   +V +Y+ +I   C               N  R D    +L+E
Sbjct: 260 LDDALSLFNEMEMKGIKADVVAYSSIIGGLC---------------NDGRWDDGAKMLRE 304

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  R   P+ +T++ALI +   +    EA  +Y EMV  G  P   TY+ ++  + +   
Sbjct: 305 MIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENR 364

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                ++ D M+ +GC P+  +Y++LI       R     +   E+  KG+ A  + YN 
Sbjct: 365 LGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNT 424

Query: 579 FAADLSRAGRSYVLDELAQKM 599
                 ++G+  V  EL Q+M
Sbjct: 425 LVQGFCQSGKLNVAKELFQEM 445



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 178/390 (45%), Gaps = 26/390 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   N  TY  +++ + ++      + +  +M E+ +  S+  + I +++        
Sbjct: 202 KYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLD 261

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A+++F  M     KA V   + ++  L    +    A++L + +     PN+ T++ L+
Sbjct: 262 DALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALI 321

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   L+EA  ++NEM+ +G  PD + ++ +++G  K  +  +A ++ ++M +KG  
Sbjct: 322 DVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCE 381

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PN+ +Y+I+I  +CK                     +   Y  L+ GF    ++++  +L
Sbjct: 382 PNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKEL 441

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            +EM  RG PP  +TY  L+  +       +A+ I+++M +S     I  YN+I+     
Sbjct: 442 FQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCN 501

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               +    ++  +  +G  PD  +Y V+IGGL  +    EA     +M E G       
Sbjct: 502 ASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCT 561

Query: 576 YNKFAADLSRAGRSYVLD--ELAQKMRFSG 603
           YN      +  G S V+   EL ++M+  G
Sbjct: 562 YNILIR--AHLGGSGVISSVELIEEMKMRG 589



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 149/328 (45%), Gaps = 22/328 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   +   Y+S++  L    +++    ML EM G   + ++ TF   ++ F    +  +A
Sbjct: 274 GIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEA 333

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             ++  M          T + L++   +     EA  + D +  +   PN+ TY++L+  
Sbjct: 334 KELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINS 393

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K +    R++ E+  KG   D V +N +++G  + GK + A +LF+ M ++G  P+
Sbjct: 394 YCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPS 453

Query: 418 VRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y I++   C                         +Y  +I G  N  ++D  + L  
Sbjct: 454 VVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFC 513

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +  +G  PD LTYN +I  +  +    EA  ++++M   G  P+  TYN++++++    
Sbjct: 514 SLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGS 573

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
                 ++ +EM  RG   D ++  +++
Sbjct: 574 GVISSVELIEEMKMRGFAADASTIKMVV 601



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 17/241 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N  TY+ +++   +A++ +  + +  E+  KGL++   T+   +  F  + +   A
Sbjct: 379 GCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVA 438

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F+ M        V T   LL+ L  +   ++A  +F+K+ K R    +  Y +++ G
Sbjct: 439 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHG 498

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    + +A  ++  +  KG KPDV+ +N+M+ GL K G  S+A  LF  MK  G +P+
Sbjct: 499 MCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPS 558

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y I+I      +  + +                +L++EM+ RG   D  T   ++ +
Sbjct: 559 DCTYNILIRAHLGGSGVISS---------------VELIEEMKMRGFAADASTIKMVVVM 603

Query: 478 M 478
           +
Sbjct: 604 L 604



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM------------IWKFCKQ-------- 431
           G++ I K ++AI LFE M    P P++  ++ +            +  FCK+        
Sbjct: 44  GIVDI-KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEH 102

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N      +I  F  +R++   + ++    + G  P+ +T++ LI    ++    EAV + 
Sbjct: 103 NMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALV 162

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             MV   ++P + T N ++      G       + D M++ GC  ++ +Y  ++  +   
Sbjct: 163 DRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKS 222

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +  A     +M E+ +KA V+ Y+     L + G
Sbjct: 223 GNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDG 258



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  ++  MI     P ++  + +   + +  +    +   + M   G   N+ +  IMI
Sbjct: 52  EAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMI 111

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             FC++                    N   ++ LI GF    R+     L+  M E    
Sbjct: 112 NCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYR 171

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +T N LI  + ++    EA+ +   MV+ G +    TY  ++    ++GN  +   +
Sbjct: 172 PNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDL 231

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M  R        Y+++I  L       +A     EM  KG+KA V+ Y+     L  
Sbjct: 232 FRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCN 291

Query: 586 AGR 588
            GR
Sbjct: 292 DGR 294


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 172/384 (44%), Gaps = 18/384 (4%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAM 286
           A++FF    +  G   +  TY SM+ +L +A + +  V M E + + + +     +   +
Sbjct: 257 AWKFF-HEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMI 315

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
             + +A +  +A ++ E          V   NC+L  L +     EA  +F+++K    P
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP 375

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL+TY +L+   CR   L  A  + + M   G  P+V   NIM++ L K  K  +A  +F
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           E M                +K C  +   +  LI G G   R+D  Y + ++M +  C  
Sbjct: 436 EEMD---------------YKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRT 480

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + + Y +LIK        ++  +IYK+M+     P +   N  M   F+ G  E GR ++
Sbjct: 481 NSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMF 540

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +E+  R   PD  SY++LI GLI    + E Y+    M E+G       YN       + 
Sbjct: 541 EEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKC 600

Query: 587 GRSYVLDELAQKMRFSGKFEVSNV 610
           G+     +L ++M+  G FE + V
Sbjct: 601 GKVNKAYQLLEEMKTKG-FEPTVV 623



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 195/469 (41%), Gaps = 39/469 (8%)

Query: 142 RNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAV 201
           +N+SS++D+         G N E   T    + T     +  +C V+ E      + E  
Sbjct: 11  KNLSSLSDN---------GENHEKPYTFEGNRQT-----VNDICNVL-ETGPWGPSAENT 55

Query: 202 LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
           L           V+ VL R +   R A  +F W   +    H   +YNS++ ++ R R F
Sbjct: 56  LSALSFKPQPEFVIGVLRRLKDVNR-AIEYFRWYERRTELPHCPESYNSLLLVMARCRNF 114

Query: 262 ETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           + +  +L EM   G   S+ T    +     A + ++   + ++M K+KF+        L
Sbjct: 115 DALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTL 174

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +              LF +++   + P +  +T L+ G+ +   +  A  + +EM     
Sbjct: 175 IGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL 234

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN------- 432
             D+V +N+ ++   K+GK   A K F  ++A G  P+  +YT MI   CK N       
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 433 -------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                           Y  +I G+G+  + D  Y LL+    +G  P  + YN ++  ++
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLR 354

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                DEA+++++EM +    P + TYN+++    + G  +   ++ D M + G  P+  
Sbjct: 355 KMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +  +++  L    +  EA    EEM  K      + +      L + GR
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 173/423 (40%), Gaps = 57/423 (13%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           K G   N RT N M+  L ++++ +   +M EEM  K     E TF   ++         
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464

Query: 297 KAVAIFELM---------------NKYKFKAG--------------------VDTINCLL 321
            A  ++E M                K  F  G                    +  +N  +
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524

Query: 322 ENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           + + ++  P++ + +F+++K  RF P+  +Y++L+ G  +     E   ++  M ++G  
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------- 430
            D  A+NI+++G  K GK + A +L E MK KG  P V +Y  +I    K          
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644

Query: 431 ----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      N  +Y+ LI GFG   R+D  Y +L+E+ ++G  P+  T+N+L+  +  
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +  +EA+  ++ M      P   TY +++    +   +      W EM ++G  P   S
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           YT +I GL       EA    +     G       YN     LS   R+     L ++ R
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR 824

Query: 601 FSG 603
             G
Sbjct: 825 RRG 827



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 50/223 (22%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y+S++   G+  + +    +LEE+ +KGL  ++ T+   ++A   A+E  +A+  F
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
           + M + K         C                         TPN  TY +L+ G C+V+
Sbjct: 716 QSMKELK---------C-------------------------TPNQVTYGILINGLCKVR 741

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
              +A   W EM  +G KP  +++  M+ GL K G  ++A  LF+  KA G  P      
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVP------ 795

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                    ++A Y  +I G  N  R    + L +E   RG P
Sbjct: 796 ---------DSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLP 829



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 111/264 (42%), Gaps = 19/264 (7%)

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           +Y  LL    R +N     ++  EM   GF P V     M+ G +K  K  +   + ++M
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           +     P   +YT +I  F   N +               D++  L ++M+E G  P   
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHS---------------DMMLTLFQQMQELGYEPTVH 204

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
            +  LI+    +   D A+ +  EM  S     I  YN+ + S+ + G  +M  K + E+
Sbjct: 205 LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEI 264

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGR 588
              G  PD+ +YT +IG L   +R  EA +  E  LEK  + P    YN        AG+
Sbjct: 265 EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH-LEKNRRVPCTYAYNTMIMGYGSAGK 323

Query: 589 SYVLDELAQKMRFSGKFEVSNVLA 612
                 L ++ R  G   + +V+A
Sbjct: 324 FDEAYSLLERQRAKGS--IPSVIA 345


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 176/337 (52%), Gaps = 20/337 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N++++ L +A + E    M +EM  +GL     ++   ++ +  A    +A+A+F  M
Sbjct: 227 TFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEM 286

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            +      V T   L+  + R+   + A  L  +++ R    N  T+T L+ G+CR   L
Sbjct: 287 AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFL 346

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A     EM +   +P VV +N+++ G  K+G+  +A +L   M+AKG  P+V +Y+ +
Sbjct: 347 DDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTI 406

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +  +CK             G+    D  ++L ++M ++G  PD +TY++LI+ +  ++  
Sbjct: 407 LSGYCK------------IGDT---DSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRL 451

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A  ++++M++ G +P   TY  ++  + + GN +    + DEMI++G  PD  +Y+VL
Sbjct: 452 GDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVL 511

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
           I GL    R+ EA + L ++     + PV D  K+ A
Sbjct: 512 IDGLSKSARTKEAQRLLFKLY---YEDPVPDNIKYEA 545



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 195/413 (47%), Gaps = 27/413 (6%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKG 275
           VL     A  P+ R    +  + G A N  TYN ++ ++  R ++ E +  + ++M   G
Sbjct: 126 VLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAG 185

Query: 276 LL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
              ++ T+   + AF  A E   A  +  +M +   +  + T N ++  L ++   ++A+
Sbjct: 186 CAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDAR 245

Query: 335 LLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            +FD++ +   TP+  +Y  L+ G+C+   L EA  V+ EM  KG  PDVV    ++  +
Sbjct: 246 KMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAM 305

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
            + G    A+ L   M+ +G   N  ++T +I  FC+                     + 
Sbjct: 306 CRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSV 365

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  LI G+    RMD   +L+ EME +G  PD +TY+ ++         D A  + ++
Sbjct: 366 VCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRK 425

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M++ G  P   TY+ +++   +        +++++M++ G  PD+ +YT LI G   +  
Sbjct: 426 MLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGN 485

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFE 606
             +A    +EM++KG+   V+ Y+     LS++ R+    + AQ++ F   +E
Sbjct: 486 VQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSART----KEAQRLLFKLYYE 534



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 168/363 (46%), Gaps = 19/363 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+A +   YN+++  L  A    +   +L  M   G+  ++ T+ I + A  A  +R++A
Sbjct: 115 GYAPSLLAYNAVLLALSDA-SLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           + +  + M        V T N L+    R+     A+ L   ++     P+L T+  ++ 
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   + +A ++++EM  +G  PD V++N ++ G  K G   +A+ +F  M  KG  P
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V ++T +I   C+             GN  R      L+ +M ERG   +  T+ ALI 
Sbjct: 294 DVVTFTSLIHAMCRA------------GNLER---AVALVGQMRERGLRMNEFTFTALID 338

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
                   D+A+   KEM     +P++  YN+++  Y + G  +  R++  EM  +G  P
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  +Y+ ++ G      +  A++   +ML+KG+    + Y+     L    R     EL 
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458

Query: 597 QKM 599
           +KM
Sbjct: 459 EKM 461



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 159/368 (43%), Gaps = 37/368 (10%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   +  +YN+++S   +A      +++  EM +KG++  + TF   ++A   A   +
Sbjct: 253 REGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLE 312

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
           +AVA+   M +   +    T   L++   R+    +A L   +++  R  P++  Y VL+
Sbjct: 313 RAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLI 372

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C++  + EA  + +EM  KG KPDVV ++ +L G  KIG    A +L   M  KG  
Sbjct: 373 NGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVV 432

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +Y+ +I   C++                    +   YT LI G      +     L
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI---------------YKEMVRSGFK 500
             EM ++G  PD +TY+ LI  +       EA R+               Y+ ++     
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRT 552

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
               +   ++K +   G      KV+  M+ R    D + Y+VLI G        +A  +
Sbjct: 553 AEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSF 612

Query: 561 LEEMLEKG 568
            +++L  G
Sbjct: 613 HKQLLRCG 620



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+ P ++A+N +L  L      S A +L   M   G +PNV +Y I++   C +      
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPS-ARRLLASMLRDGVAPNVYTYNILVRALCAR------ 167

Query: 438 CLITGFGNRRR-MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                 G R   + +V D   +M   GC P+ +TYN L+         D A R+   M  
Sbjct: 168 ------GQREEALGVVGD---DMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMRE 218

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +P++ T+N ++    + G  E  RK++DEM R G  PD  SY  L+ G        E
Sbjct: 219 GGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHE 278

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A     EM +KG+   V+ +      + RAG       L  +MR  G
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG 325



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 15/333 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN +++   +  + +    ++ EM  KG+   + T+   ++ +    +   A   FEL N
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSA---FEL-N 423

Query: 307 KYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
           +   K GV     T + L+  L   +   +A  LF+K L+    P+  TYT L+ G C+ 
Sbjct: 424 RKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKE 483

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N+ +A  + +EMI KG  PDVV ++++++GL K  +  +A +L   +  + P P+   Y
Sbjct: 484 GNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKY 543

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             ++             L+ GF  +  M+    + + M +R    DG  Y+ LI      
Sbjct: 544 EALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRG 603

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
               +A+  +K+++R GF P   +   +++  F+ G       V  E++   CC   ++ 
Sbjct: 604 GNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLN--CCSLADAE 661

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           T     LI  +R  E   Y +   E  M+ P L
Sbjct: 662 TS--KALIDLNRK-EGVGYFQAQGELCMQKPAL 691


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 172/361 (47%), Gaps = 20/361 (5%)

Query: 217 VLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           +++  R  RR   A   F +   K G + +  TYNS++  L    Q++   ++L EM   
Sbjct: 244 IIDSHRKDRRVNEALDIFSYMKVK-GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL 302

Query: 275 GLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
            ++  + TF + ++      +  +A  + + M +   +  V T + L+          EA
Sbjct: 303 NIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEA 362

Query: 334 QLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           + LFD +  +   P++ +Y +L+ G+C+VK + EA +++NEMI +G  P+ V++N ++ G
Sbjct: 363 RKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHG 422

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L ++G   +A  LF+ M   G  PN+ +Y+I++  FCKQ           FG   R    
Sbjct: 423 LCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGY---------FGKAFR---- 469

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L + M+     P+ + YN LI  M       +A +++ E+   G +P    Y  I+  
Sbjct: 470 --LFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIING 527

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G  +   + +  M   GC PD+ SY V+I G +       A + + EM +KG  A 
Sbjct: 528 LCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587

Query: 573 V 573
           V
Sbjct: 588 V 588



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 158/337 (46%), Gaps = 17/337 (5%)

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           +I+   + ++T++S+ ++M   GL  ++ T  I +N F+  +    A ++   + K   +
Sbjct: 106 AIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQ 165

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRV 370
             + T   L+  L +     +A  LFD +  R   P++ TYT ++ G C++     A  +
Sbjct: 166 PTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGL 225

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
             +M + G +P+VV ++ +++   K  + ++A+ +F  MK KG SP++ +Y         
Sbjct: 226 LKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYN-------- 277

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                   LI G  N  +      LL EM      PD +T+N L+  +  +    EA  +
Sbjct: 278 -------SLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGV 330

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
            K M   G +P + TY+ +M  Y         RK++D MI +GC PD  SY +LI G   
Sbjct: 331 LKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCK 390

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             R  EA +   EM+ +G+    + YN     L + G
Sbjct: 391 VKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLG 427



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 193/452 (42%), Gaps = 33/452 (7%)

Query: 150 DNQDSDGECDGNNSESEITSVSYKSTADP-----------REIERVCKVIDELFSLDRNM 198
           D +  D  C   N +  + S ++     P             I ++ +  D + SL + M
Sbjct: 65  DKRKHDDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQM 124

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGR 257
           E      G++ +   +  ++  F H +R    F   A   K G      T+ ++++ L +
Sbjct: 125 ELA----GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCK 180

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
             +F   + + ++M  +G    + T+   +N      E   A  + + M +   +  V T
Sbjct: 181 VGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVT 240

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            + ++++  + +   EA  +F  +K +  +P++ TY  L+ G C      EA  + NEM 
Sbjct: 241 YSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMR 300

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
                PD+V  N++++ + K GK S+A  + + M   G  P+V +Y+ +++         
Sbjct: 301 SLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMY--------- 351

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                 G+  R  +     L   M  +GC PD  +YN LI      K  DEA +++ EM+
Sbjct: 352 ------GYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMI 405

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P   +YN ++    Q G+    R ++  M   G  P+  +Y++L+ G   Q   G
Sbjct: 406 HQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFG 465

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +A++    M     K  ++ YN     + ++G
Sbjct: 466 KAFRLFRAMQSTYSKPNLVMYNILIDAMCKSG 497



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N ++  + +  +      +L+ M E G+   + T+   M  ++   E  +A  +F+ M
Sbjct: 310 TFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAM 369

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                K  V + N L+    + K   EA+ LF+++ H+  TPN  +Y  L+ G C++ +L
Sbjct: 370 ITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSL 429

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  ++  M   G  P++  ++I+L+G  K G    A +LF  M++    PN+  Y I+
Sbjct: 430 REARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNIL 489

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     NA +YT +I G      +D   +  + MEE GC
Sbjct: 490 IDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGC 549

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           PPD ++YN +I+     K    AV++  EM   GF   + T
Sbjct: 550 PPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 158/336 (47%), Gaps = 25/336 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N   YN+++  + + +       +  EM  +G+   + T+   ++ F    + K A+ +F
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLF 236

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
             M     K  V T N L++   +    KE + +F  + K    PN+ TY  L+ G+C V
Sbjct: 237 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 296

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K + +A  ++N M   G  PD  ++NIM+ G  KI K  +A+ LF+ M  K   PNV +Y
Sbjct: 297 KQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTY 356

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           T +I   CK     Y                  L+ EM +RG PPD +TY++++  +   
Sbjct: 357 TSLIDGLCKSGKISYA---------------LKLVDEMHDRGVPPDIITYSSILDALCKN 401

Query: 482 KMPDEAV--------RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
              D+A+        ++++++   G+   ++ Y ++++ +   G +     +  +M   G
Sbjct: 402 HQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNG 461

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             PD  +Y ++I  L  +D +  A K L EM+ +G+
Sbjct: 462 RIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 193/464 (41%), Gaps = 64/464 (13%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           N  HNLV     R  H + P    F               +  ++  L +   + T +S+
Sbjct: 38  NDEHNLVSS-FNRLLHQKNPTPPIF--------------EFGKILGSLVKINCYHTAISL 82

Query: 268 LEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-- 324
             +M  KG+ S + T  I +N F+   +   + ++F  + K  +   V T+  L++ L  
Sbjct: 83  HRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCL 142

Query: 325 ---------GRSKL--PKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWN 372
                    G  K+   + A  L  ++  +   PN+  Y  ++   C+VK + EA  +++
Sbjct: 143 KVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 202

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+ +G  PDVV ++ ++ G   +GK  DAI LF  M  +   P+V ++ I++  FCK  
Sbjct: 203 EMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG 262

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              N   Y  L+ G+   ++++    +   M + G  PD  +YN
Sbjct: 263 KMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYN 322

Query: 473 ALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            +I    KI+K+ DEA+ ++K+M      P + TY  ++    ++G      K+ DEM  
Sbjct: 323 IMINGFCKIKKV-DEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHD 381

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYL--------EEMLEKGMKAPVLDYNKFAADL 583
           RG  PD  +Y+ ++  L    +  +A   L        E++  KG    V  Y       
Sbjct: 382 RGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGF 441

Query: 584 SRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDR 627
              G       L  KM  +G+       A+  E     +++KD 
Sbjct: 442 CVKGLFNEALALLSKMEDNGRIPD----AKTYEIIILSLFKKDE 481


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 151/328 (46%), Gaps = 22/328 (6%)

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGW 358
           A+   M +Y F     T   ++ +L      K+    F ++    TP N+  YT  + G 
Sbjct: 194 ALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGL 253

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPN 417
           C+ + + +A  V  EM+ +G KP+V  H  +++GL KIG    A +LF +++K+    PN
Sbjct: 254 CKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPN 313

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT+MI  +C                    K N   YT LI G       D  ++L+ 
Sbjct: 314 VHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMN 373

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M++ G  P+  TYNA+I     +    EA ++ +     G K    TY +++  + + G
Sbjct: 374 KMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQG 433

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +      ++D M+  GCCPD  +YT LI     Q +  E+ K+ ++ L  G+      Y 
Sbjct: 434 HITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYT 493

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF 605
              A   + GRS +   + ++M  +G F
Sbjct: 494 SMIAGYCKVGRSTMALRVFERMVQNGCF 521



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 18/302 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y + +  L + R  +    +LEEM  +GL  ++ T    ++        ++A
Sbjct: 238 GTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERA 297

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
             +F +L+    +K  V T   ++    R  KL +   LL   ++    PN  TYT L+G
Sbjct: 298 FRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIG 357

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+  +   A  + N+M  +GF P++  +N +++G  K GK  +A K+  +  ++G   
Sbjct: 358 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF 417

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  +YTI+I + CKQ    Y                 DL   M E GC PD   Y +LI 
Sbjct: 418 DKITYTILITEHCKQGHITY---------------ALDLFDRMVENGCCPDIEAYTSLIS 462

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               Q+  +E+ + + + +  G  PT  TY  ++  Y + G   M  +V++ M++ GC  
Sbjct: 463 TYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFA 522

Query: 537 DD 538
           D 
Sbjct: 523 DS 524



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M   G  PD  ++ AL+ +   +   +E   +   M R GF     T  ++++S  + G 
Sbjct: 164 MTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGR 223

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++   + +  M+  G  P+  +YT  I GL  +    +A+  LEEM+ +G+K  V  +  
Sbjct: 224 FKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 283

Query: 579 FAADLSRAG 587
               L + G
Sbjct: 284 LIDGLCKIG 292



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +  EM   G    + T N +++   +TG++   RKV+D M R G CPD+ S+  L+
Sbjct: 121 EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALV 180

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
                + +  E    L  M   G              L  A  + V+  L +K RF    
Sbjct: 181 VVCCREGKVEEVDALLAAMWRYGF------------SLDNATCTVVVRSLCEKGRFK--- 225

Query: 606 EVSNVLARWAE 616
           +VS    R  E
Sbjct: 226 DVSEFFRRMLE 236



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N  TYN+++    +  + +    +L     +GL     T+ I +           A
Sbjct: 379 GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYA 438

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           + +F+ M +      ++    L+    + +  +E+Q  FDK L     P   TYT ++ G
Sbjct: 439 LDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAG 498

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           +C+V     A RV+  M+  G   D +
Sbjct: 499 YCKVGRSTMALRVFERMVQNGCFADSI 525


>gi|115488482|ref|NP_001066728.1| Os12g0456100 [Oryza sativa Japonica Group]
 gi|77555567|gb|ABA98363.1| hypothetical protein LOC_Os12g27060 [Oryza sativa Japonica Group]
 gi|113649235|dbj|BAF29747.1| Os12g0456100 [Oryza sativa Japonica Group]
 gi|125579252|gb|EAZ20398.1| hypothetical protein OsJ_36005 [Oryza sativa Japonica Group]
          Length = 1117

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 213/508 (41%), Gaps = 60/508 (11%)

Query: 162 NSESEITSVSYKSTADPREIERVCKVIDELFSLD---RNMEAVLDECGINLSHNLVVDVL 218
           +SE  I  V   +  D   I  V   + E+   +    ++E  L+  G+  +  LV  VL
Sbjct: 156 DSEQSIQEVGDGNAGDVENISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVL 215

Query: 219 ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLL 277
            R    R   F+FF W    PGF H + TYN+M+ I G  R F  M  +++EM  E  L 
Sbjct: 216 NRCFKKRHLGFKFFDWVRQVPGFQHTTETYNAMLYIAGEERNFGAMEKLMDEMDKEMCLK 275

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKE- 332
            ++T+ I ++++  A++  K ++ F+ M K +  A       TI   L N  +S+L  E 
Sbjct: 276 DIKTWTIVISSYGKARQIGKMLSTFQAMGKSRHVAADSKVYRTILHALCNSAKSELALEF 335

Query: 333 ---------------------------AQLLF----DKLKHRFTPNLTTYTVLLGGWCRV 361
                                      A+ +F    D +K    P    Y   L  +C  
Sbjct: 336 YKDMARNTEVGSDIFRLLLCCLAGSDNAEGVFYVRDDMIKSMKYPEEYCYLEALRSFCVS 395

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA +++ +M++K       A  I+L GL K G+   A+++ E MK+   +      
Sbjct: 396 GKIEEAQKIFQQMMNKSIASS-SAFEILLRGLCKDGRMDKALQVMEYMKSNSSA------ 448

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                     ++A +  LI G+  +       ++L+EM E GC P   +Y  L++ +   
Sbjct: 449 ----------SSATFGSLIDGYLRKGERMKALEVLQEMREYGCVPLASSYTQLMQHLFAF 498

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              + A R+Y+EM  +G +P +     ++  + + G+       +  +   G  P   +Y
Sbjct: 499 DQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINENGQKPTLKAY 558

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           TV I  L    R  EA K L+EMLE   +     +++  + L     ++ L+E +   R 
Sbjct: 559 TVFIQELCKASRPLEALKLLKEMLESDFRPSEQTFSRIISTLY---DNHYLEEASNIERM 615

Query: 602 SGKFEVSNVLARWAETTKNRVYRKDRIE 629
              F   + +      T ++V   D+ E
Sbjct: 616 RASFNCCSPIEELQRRTLDQVDYTDKFE 643



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 184/426 (43%), Gaps = 46/426 (10%)

Query: 149  DDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLD--RNMEAVLDECG 206
            DD QD +   D NN                 ++E++C++   L S D   ++E  L+   
Sbjct: 677  DDTQDLEQAKDYNN----------------EDVEQICRI---LSSSDCWSSIEQALEMTS 717

Query: 207  INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
            I+ + +LV  +++R +   R A +FF W G +  +   ++TYN+ + + G A+ F+ M  
Sbjct: 718  ISFTPDLVDAIMKRCKANSRAALQFFSWVGKRSYYMQTTKTYNTAIKLAGSAKDFKHMRH 777

Query: 267  MLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            +  EM   +   +++T+ + +  +  A   + A+  F  M +  F+    T + L+  L 
Sbjct: 778  LYREMIWAECCPTVDTWNVMICQYGNAGLTEMALETFYQMKQGGFQPDKTTYSHLIMYLS 837

Query: 326  RSK---LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            R K   +    ++  +  +  + P+       L   C    +  A      +   GF   
Sbjct: 838  RRKGRKVDAAVKIFHEMCRAGYIPDNGMVCTYLSVLCECGMIDRAESSVVLLCKHGFSIQ 897

Query: 383  VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------------ 430
               ++I++  L +  + ++A+ LF+ +K  G S +   Y  +I    +            
Sbjct: 898  A-GYSILIRSLCRSDRMAEALSLFDNIKNYGCSRSAYMYGSLIHALLRRDRFEDASAKLA 956

Query: 431  --------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    Q+  +YT  +  +  +R +    D+LKEM E GC P  +TY+ALI+      
Sbjct: 957  EMKNLGIAQSTHMYTSFMIYYLGKRDVSKAMDVLKEMTENGCEPTVVTYSALIRGHMAMG 1016

Query: 483  MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
            M  EA  +++ M   G  P   TY+M M    + G  E G ++  +M+  G  P   ++ 
Sbjct: 1017 MVSEAWDVFQRMKLKGPVPDFETYSMFMSCLCKAGRSEDGLQLIHDMLNSGIIPSAVNFR 1076

Query: 543  VLIGGL 548
             ++ GL
Sbjct: 1077 TVVHGL 1082


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 184/386 (47%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  ++ T+ +++  L    +    V+++++M ++G    + T+   +N      +   A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +++ + M K K +A V   N +++ L + K   +A  LF ++ ++   P++ TY+ L+  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI++   P+VV  + +++  +K GK  +A KL++ M  +   P+
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+                    +MI K C  N   Y+ LI GF   +R++   +L +
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TY  LI      +  D A  ++K+MV  G  P I TYN+++    + G
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                  V++ + R    PD  +Y ++I G+    +  + ++    +  KG+   V+ YN
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYN 542

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              +   R G     D L +KM+  G
Sbjct: 543 TMISGFCRKGSKEEADSLLKKMKEDG 568



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 165/377 (43%), Gaps = 55/377 (14%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + +  +FE ++S+ E+M   G+   + T+ I +N F    +   A+A+   M 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKM- 144

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
                                            +K  + P++ T + LL G+C  K + +
Sbjct: 145 ---------------------------------MKLGYEPDIVTLSSLLNGYCHSKRISD 171

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  + ++M++ G+KPD      ++ GL    K S+A+ L + M  +G  P++ +Y  ++ 
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK+                    +  +Y  +I G    + MD   +L  EM+ +G  P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D  TY++LI  +       +A R+  +M+     P + T++ ++ ++ + G      K++
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 351

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           DEMI+R   PD  +Y+ LI G    DR  EA    E M+ K     V+ Y+       +A
Sbjct: 352 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKA 411

Query: 587 GRSYVLDELAQKMRFSG 603
            R     EL ++M   G
Sbjct: 412 KRVEEGMELFREMSQRG 428



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 183/384 (47%), Gaps = 32/384 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFEL 304
           TY ++++ L +    +  +S+L++M EKG +  +   +   ++     K    A+ +F  
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283

Query: 305 MNKYKFKAGVDT----INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           M+    +  V T    I+CL  N GR      ++LL D ++ +  PN+ T++ L+  + +
Sbjct: 284 MDNKGIRPDVFTYSSLISCLC-NYGR--WSDASRLLSDMIERKINPNVVTFSALIDAFVK 340

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              L+EA ++++EMI +   PD+  ++ ++ G     +  +A  +FE+M +K   PNV +
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 400

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+ +I  FCK                     N   YT LI GF   R  D    + K+M 
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             G  P+ LTYN L+  L K  K+  +A+ +++ + RS  +P I+TYN++++   + G  
Sbjct: 461 SVGVHPNILTYNILLDGLCKNGKLA-KAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKV 519

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E G +++  +  +G  P+  +Y  +I G   +    EA   L++M E G       YN  
Sbjct: 520 EDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
                R G      EL ++MR  G
Sbjct: 580 IRARLRDGDREASAELIKEMRSCG 603



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 17/265 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY+S+++      + +    M E M  K    ++ T+   +  F  AK  ++ + +F  M
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM 424

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           ++        T   L+    +++    AQ++F ++      PN+ TY +LL G C+   L
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  V+  +     +PD+  +NIM+EG+ K GK  D  +LF  +  KG SPNV +Y  M
Sbjct: 485 AKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTM 544

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I  FC++            G++   D    LLK+M+E G  P+  TYN LI+        
Sbjct: 545 ISGFCRK------------GSKEEAD---SLLKKMKEDGPLPNSGTYNTLIRARLRDGDR 589

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMI 509
           + +  + KEM   GF     T  ++
Sbjct: 590 EASAELIKEMRSCGFAGDASTIGLV 614



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 170/384 (44%), Gaps = 57/384 (14%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID   SL + ME    E  + + +N ++D L +++H    A   F    D  G   +  T
Sbjct: 239 IDLALSLLKKMEKGKIEADVVI-YNTIIDGLCKYKHMD-DALNLFTEM-DNKGIRPDVFT 295

Query: 248 YNSMMSIL---GR----ARQFETMV------------SMLEEMGEKGLL----------- 277
           Y+S++S L   GR    +R    M+            ++++   ++G L           
Sbjct: 296 YSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 355

Query: 278 ------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331
                  + T+   +N F       +A  +FELM        V T + L++   ++K  +
Sbjct: 356 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVE 415

Query: 332 EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           E   LF ++  R    N  TYT L+ G+ + ++   A  V+ +M+  G  P+++ +NI+L
Sbjct: 416 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 475

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
           +GL K GK + A+ +FE ++     P++ +Y IMI   CK                 +++
Sbjct: 476 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG---------------KVE 520

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             ++L   +  +G  P+ + YN +I     +   +EA  + K+M   G  P   TYN ++
Sbjct: 521 DGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGC 534
           ++  + G+ E   ++  EM  R C
Sbjct: 581 RARLRDGDREASAELIKEM--RSC 602



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 20/243 (8%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ +M+     P +V  N +L  + K+ K    I L E M+  G S ++ +Y+I I
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             FC++                    +    + L+ G+ + +R+     L+ +M E G  
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  T+  LI  + +     EAV +  +MV+ G +P + TY  ++    + G+ ++   +
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M +     D   Y  +I GL       +A     EM  KG++  V  Y+   + L  
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 305

Query: 586 AGR 588
            GR
Sbjct: 306 YGR 308



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 30/266 (11%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P + ++  L G  C  ++   A   + E              I+   L  I K  DA+ L
Sbjct: 25  PTVPSFFNLCGSGCWERSFASASGDYRE--------------ILRNRLSDIIKVDDAVDL 70

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M    P P++  +  ++    K N               + ++V  L ++M+  G  
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMN---------------KFELVISLGEQMQTLGIS 115

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D  TY+  I     +     A+ +  +M++ G++P I T + ++  Y  +        +
Sbjct: 116 HDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVAL 175

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            D+M+  G  PD  ++T LI GL   +++ EA   +++M+++G +  ++ Y      L +
Sbjct: 176 VDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCK 235

Query: 586 AGRSYVLDELAQKMRFSGKFEVSNVL 611
            G   +   L +KM   GK E   V+
Sbjct: 236 RGDIDLALSLLKKME-KGKIEADVVI 260


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 169/377 (44%), Gaps = 24/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +YN++++ L +A++ +  V +L EM   G      T    M+         +A+ + E M
Sbjct: 181 SYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 240

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            K  F A V     L+     +      + LFD++  +  + N+ TY+ L+ G CR+   
Sbjct: 241 KKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW 300

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V N M + G  PDVV +  +++GL K G+ + A+ L  +M  KG  P+  +Y ++
Sbjct: 301 KEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 360

Query: 425 IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEM--EER 462
           +   CK+   +                    Y  L+ G  ++ ++D    L   M   E 
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
              P+  T+N LI  +  +    +AV+I+++MV+ G    + TYNM++    + G  +  
Sbjct: 421 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 480

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            ++W +++  G  P+  +Y++LI G         A     EM   G+   + DYN   A 
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 540

Query: 583 LSRAGRSYVLDELAQKM 599
           L + G       L Q+M
Sbjct: 541 LCKEGSLEQAKSLFQEM 557



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 173/370 (46%), Gaps = 23/370 (6%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  TY  ++  L   GRA     +++++ E GE+   S  T+ + ++         
Sbjct: 314 GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEP--SNVTYNVLLSGLCKEGLVI 371

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFTPNLTTYTV 353
            A  I  +M +   KA V T N L++ L       EA  LF+ +   ++   PN+ T+ +
Sbjct: 372 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 431

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+GG C+   L +A ++  +M+ KG   ++V +N++L G LK GK  +A++L++ +   G
Sbjct: 432 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 491

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             PN  S+T             Y+ LI GF   R ++I   L  EM   G  P    YN 
Sbjct: 492 FVPN--SFT-------------YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNT 536

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+  +  +   ++A  +++EM  +  +P I ++N ++    + G+++  +++  +M+  G
Sbjct: 537 LMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMG 596

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             PD  +++ LI  L       EA   LE M+  G     L Y+     LS  G +  + 
Sbjct: 597 LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEII 656

Query: 594 ELAQKMRFSG 603
            L  +M   G
Sbjct: 657 NLLHQMAAKG 666



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 142/315 (45%), Gaps = 17/315 (5%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
           +AV++F     +       T N L++ L RS+    A  ++ ++ H    P+  + + L+
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             +   +       V   ++ +GF  +V   NI+L+GL + G   +A+ L   M  K  S
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVS 176

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ SY  +I   CK                +++     LL EME  GC P+ +T   L+
Sbjct: 177 PDIVSYNTLINGLCKA---------------KKLKEAVGLLLEMEAAGCFPNSVTCTTLM 221

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +      DEA+ + + M + GF   +  Y  ++  +   GN + G++++DEM+ +G  
Sbjct: 222 DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGIS 281

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            +  +Y+ L+ GL    +  EA   L  M E G+   V+ Y      L + GR+    +L
Sbjct: 282 ANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDL 341

Query: 596 AQKMRFSGKFEVSNV 610
              M   G+ E SNV
Sbjct: 342 LNLMVEKGE-EPSNV 355


>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
 gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
          Length = 461

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 174/355 (49%), Gaps = 24/355 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKER 295
           KP F ++  +Y+ +++ LGRA+ F  M  +L ++ E+ L + +   F   +N +  A+  
Sbjct: 39  KP-FRYSLLSYDLIITKLGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLP 97

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + A+ +   +  ++ +  V + N LL      K   + + LF  ++     +  TY +L+
Sbjct: 98  ENALKLLVELPSFRVQRTVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLI 157

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL-FEVMKAKGP 414
            G+C    L +A +V++EM ++G  P+V+    ++ G     +  +A KL  +++K    
Sbjct: 158 RGFCASGRLDDASKVFDEMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRV 217

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN   Y  +I   CK                     + A+Y+ LI+G     R +    
Sbjct: 218 YPNAYIYASLIKGVCKNGELSLAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALG 277

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           + ++M+ERG  PD +TYN +I L    K  + A R+  EMV  G KP + +YN+I++  F
Sbjct: 278 VWEDMKERGYKPDTVTYNVIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELF 337

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + G       ++++M RRGC PD  SY +L  G  +  +  EA   L+EM+ KG 
Sbjct: 338 EEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFKGF 392



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 151/330 (45%), Gaps = 24/330 (7%)

Query: 213 LVVDVLERFRHARRP--AFRFFCWAGDKPGF--AHNSRTYNSMMSILGRARQFETMVSML 268
           L  D++  +  AR P  A +      + P F      ++YNS++S+    + F+ M  + 
Sbjct: 83  LFCDIINFYGRARLPENALKLLV---ELPSFRVQRTVKSYNSLLSVFLMCKDFDKMRELF 139

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
             + + G     T+ + +  F A+     A  +F+ M        V T   L+       
Sbjct: 140 VGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTNRGVSPNVITFGNLIYGFCLHL 199

Query: 329 LPKEA-QLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
             KEA +L  D +K +R  PN   Y  L+ G C+   L  A R+  EMI    + D   +
Sbjct: 200 RLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKNGELSLAFRLKKEMIRNKIELDPAIY 259

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           + ++ GL K G++ +A+ ++E MK +G  P+  +Y ++I  FCK                
Sbjct: 260 STLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYNVIINLFCKD--------------- 304

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           +  +  Y LL EM E+GC PD ++YN +++ +  +    EA  ++++M R G  P + +Y
Sbjct: 305 KDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVSY 364

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            ++   +     ++    + DEMI +G  P
Sbjct: 365 RILFDGFCNGMQFKEAAFILDEMIFKGFVP 394


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 22/320 (6%)

Query: 267 MLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           + +EM   GL   E T+   M+ +    +R+K  A+FE M +   +  + T NCL+    
Sbjct: 60  VFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWC 119

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           R+   + A+ LFD++  R    N+ +Y  L+ G CR   L +A ++ + M  +G +P ++
Sbjct: 120 RTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSII 179

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
             N++++G  K GK S+A+  F  MKA G  P+  +Y ++I  FC+              
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      YT LI  F     M   +++L  ME+ G   D  TY  L++ + ++   
Sbjct: 240 KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNM 299

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A ++++ M   G +P+   Y+M++  Y + G+     K+  EM ++G  P+  SY + 
Sbjct: 300 KDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLT 359

Query: 545 IGGLISQDRSGEAYKYLEEM 564
           I  L   D+  EA   L++M
Sbjct: 360 IRVLCKDDKCQEAEALLDDM 379



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 23/286 (8%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++T  T L+ G C+  ++ EA RV++EM   G  P+ V +  ++ G    G+R     LF
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
           E M+  G  PN+ +Y  +I ++C+                    +N   Y  LI G    
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            ++     LL  M   G  P  +T+N L+    K  KM + A+  + +M  +GF+P+  T
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSN-ALPFFNQMKAAGFQPSAVT 215

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YNM++  + +  +     +   +M  RG  P   +YT+LI     ++  G+A++ L  M 
Sbjct: 216 YNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGME 275

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           + G++     Y      L   G      +L Q M   G  E SNV+
Sbjct: 276 KAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKG-VEPSNVI 320



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 135/311 (43%), Gaps = 17/311 (5%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SM 279
           F H +R           + G   N  TYN ++    R  +FE   S+ +EM  +G++ ++
Sbjct: 84  FTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNV 143

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            ++   +       +   A  + ++M     +  + T N L++  G++     A   F++
Sbjct: 144 VSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203

Query: 340 LKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +K   F P+  TY +L+ G+CR +++  A R  ++M ++G +P  V + I+++   +   
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A ++   M+  G   +  +Y +++   C +            GN   M     L + 
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTYGVLVRALCME------------GN---MKDARKLFQS 308

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M E+G  P  + Y+ +I     +    +A+++  EM + G  P   +Y + ++   +   
Sbjct: 309 MGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDK 368

Query: 519 YEMGRKVWDEM 529
            +    + D+M
Sbjct: 369 CQEAEALLDDM 379



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 417 NVRSYTIMIWKFCKQNAAVY-----TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +VRS   M+ +  K   A       T L+ G      +     +  EM   G  P+ +TY
Sbjct: 17  DVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTY 76

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            AL+         ++   +++EM R G +P ++TYN ++  + +TG +E  R ++DEM  
Sbjct: 77  TALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPV 136

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           RG   +  SY  LI GL    +  +A K L+ M  +G +  ++ +N       +AG+   
Sbjct: 137 RGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSN 196

Query: 592 LDELAQKMRFSGKFEVSNV 610
                 +M+ +G F+ S V
Sbjct: 197 ALPFFNQMKAAG-FQPSAV 214


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 175/371 (47%), Gaps = 27/371 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++  YN ++++L    + + + S+  EMG +G+   + TF   M A   A + + A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-----TPNLTTYTV 353
           V + E M+         T   L++         EA L   ++K R      +    T  V
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEG-SIEAAL---RVKARMLEMGCSATKVTVNV 164

Query: 354 LLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           L+ G+C++  + +A G +  E+ D GF+PD + +N  + GL +      A+K+ +VM  +
Sbjct: 165 LINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 223

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+V +Y I++   CK                 +++    +L +M +RGC PD  T+N
Sbjct: 224 GHDPDVFTYNIVVNCLCKNG---------------QLEEAKGILNQMVDRGCLPDITTFN 268

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +      +EA+ + +++   G  P ++T+N+++ +  + G+  +  ++++EM   
Sbjct: 269 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 328

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           GC PD+ +Y  LI  L S  + G+A   L++M   G     + YN     L +  R    
Sbjct: 329 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEA 388

Query: 593 DELAQKMRFSG 603
           +E+  +M   G
Sbjct: 389 EEVFDQMDLQG 399



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 23/337 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N          A+ + ++M +      V T N ++  L ++   +EA+ + +++
Sbjct: 196 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 255

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P++TT+  L+   C    L EA  +  ++  KG  PDV   NI++  L K+G  
Sbjct: 256 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 315

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A++LFE MK  G +P+  +Y  +I   C                     ++   Y  +
Sbjct: 316 HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 375

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G   + R++   ++  +M+ +G   + +T+N LI  +   K  D+A  +  +M+  G 
Sbjct: 376 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGL 435

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P   TYN I+  Y + G+ +    + + M   G   D  +Y  LI GL    R+  A K
Sbjct: 436 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 495

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
            L  M  KGM+     YN     L R  R+ + D L+
Sbjct: 496 VLRGMRIKGMRPTPKAYNPVLQSLFR--RNNIRDALS 530



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 22/370 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+ ++ L +       + +++ M ++G    + T+ I +N      + ++A
Sbjct: 189 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 248

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M        + T N L+  L      +EA  L  ++  +  +P++ T+ +L+  
Sbjct: 249 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 308

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +   A R++ EM + G  PD V +N +++ L  +GK   A+ L + M++ G   +
Sbjct: 309 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 368

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+                    NA  +  LI G    +++D  ++L+ 
Sbjct: 369 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 428

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  P+ +TYN+++     Q    +A  I + M  +GF+  + TY  ++    + G
Sbjct: 429 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 488

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             ++  KV   M  +G  P   +Y  ++  L  ++   +A     EM E G     L Y 
Sbjct: 489 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 548

Query: 578 KFAADLSRAG 587
                L R G
Sbjct: 549 IVFRGLCRGG 558



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 155/346 (44%), Gaps = 27/346 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N++++ L    + E  + +  ++  KG+   + TF I +NA     +   A+ +FE M
Sbjct: 266 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 325

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                     T N L++NL    KL K   LL D        +  TY  ++ G C+   +
Sbjct: 326 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V+++M  +G   + +  N +++GL K  K  DA +L   M ++G  PN  +Y  +
Sbjct: 386 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 445

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  +CKQ                    +   Y  LI G     R  +   +L+ M  +G 
Sbjct: 446 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 505

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P    YN +++ +  +    +A+ +++EM   G  P   TY ++ +   + G     ++
Sbjct: 506 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI--KE 563

Query: 525 VWD---EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +D   EM+ +G  P+ +S+ +L  GL++        + +E ++EK
Sbjct: 564 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 609



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYNS+++   +    +    +LE M   G  + + T+   +N    A   + A
Sbjct: 434 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 493

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           + +   M     +      N +L++L R    ++A  LF ++      P+  TY ++  G
Sbjct: 494 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 553

Query: 358 WCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            CR    + EA     EM+DKGF P+  +  ++ EGLL +G     I+  E++  K
Sbjct: 554 LCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 609



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 49/254 (19%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           D  G + N+ T+N+++  L + ++ +    ++ +M  +GL     T+   +  +    + 
Sbjct: 396 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 455

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA  I E M    F+  V                                   TY  L+
Sbjct: 456 KKAADILETMTANGFEVDV----------------------------------VTYGTLI 481

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+      A +V   M  KG +P   A+N +L+ L +     DA+ LF  M   G  
Sbjct: 482 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEP 541

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +Y I+    C+    +                 +D + EM ++G  P+  ++  L 
Sbjct: 542 PDALTYKIVFRGLCRGGGPIKE--------------AFDFMLEMVDKGFIPEFSSFRMLA 587

Query: 476 KLMKIQKMPDEAVR 489
           + +    M D  +R
Sbjct: 588 EGLLNLGMDDYFIR 601


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 131/264 (49%), Gaps = 17/264 (6%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           R  +P   ++   KL +    ++ +Y+  + G C+   + EA  ++ EM +KG  PD   
Sbjct: 69  RRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFT 128

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +NI++ GL K  +    + L + M+A+G SP V +YT +I  FC                
Sbjct: 129 YNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAG------------- 175

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK--PTI 503
             R+D   D+L EME RG  P+ +TY ALI+ +      + A+ + KEM   G +  P +
Sbjct: 176 --RVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNV 233

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY  ++    Q G +EMG +  DEMI  GC P++ +YT LI GL  +    EA   L E
Sbjct: 234 VTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNE 293

Query: 564 MLEKGMKAPVLDYNKFAADLSRAG 587
           M+  G +  V+ YN     L + G
Sbjct: 294 MVAIGCELDVVIYNSLIDGLCKMG 317



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 14/326 (4%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           +N      +  +A+ IF  M +        T N L+  L +    +    L D+++ R F
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P + TYT L+ G+C    +  A  + +EM  +G  P+ V +  +++GL   G+   AI 
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAIL 217

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           + + MK +G               C  N   YT LI G   +   ++  + L EM   GC
Sbjct: 218 VLKEMKLRGNE-------------CCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGC 264

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+  TY ALI  +  +    EA  +  EMV  G +  +  YN ++    + G  +  R+
Sbjct: 265 FPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFARE 324

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +   M+ +G  PD  +YT LI GL       EA   ++EM  KG+    + Y       +
Sbjct: 325 MQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFT 384

Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNV 610
           +A R+    +L  +M+ +G     ++
Sbjct: 385 QADRTDHALQLVNEMKSNGLMPAGDI 410



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 21/319 (6%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G A +S TYN +++ L +  Q E  VS+++EM  +G   ++ T+   ++ F  A   
Sbjct: 118 EEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRV 177

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYT 352
             A+ I + M          T   L++ L      + A L+  ++K R     PN+ TYT
Sbjct: 178 DAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYT 237

Query: 353 VLLGGWCRVKNLMEAG-RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            L+ G C+ K L E G    +EMI  G  P+   +  ++ GL + G   +A  L   M A
Sbjct: 238 QLIHGLCQ-KGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVA 296

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G               C+ +  +Y  LI G      +D   ++   M E+G  PD  TY
Sbjct: 297 IG---------------CELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTY 341

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            +LI+ +    + DEA+ + +EM   G  P   TY  ++  + Q    +   ++ +EM  
Sbjct: 342 TSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKS 401

Query: 532 RGCCPDDNSYTVLIGGLIS 550
            G  P  + Y +L   L S
Sbjct: 402 NGLMPAGDIYKILFKSLYS 420



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 2/196 (1%)

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +G   ++R Y   +      +   Y+  I G   + ++    ++ +EMEE+G  PD  TY
Sbjct: 70  RGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTY 129

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N LI  +      +  V +  EM   GF PT+ TY  ++  +   G  +    + DEM  
Sbjct: 130 NILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEH 189

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK-AP-VLDYNKFAADLSRAGRS 589
           RG  P+  +YT LI GL        A   L+EM  +G +  P V+ Y +    L + G  
Sbjct: 190 RGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLF 249

Query: 590 YVLDELAQKMRFSGKF 605
            +  E   +M  SG F
Sbjct: 250 EMGMEFLDEMIISGCF 265



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ I++EM   G  P   TYN+++    +    EMG  + DEM  RG  P   +YT LI
Sbjct: 109 EAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLI 168

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            G  +  R   A   L+EM  +G+    + Y      L   G       + ++M+  G  
Sbjct: 169 HGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNE 228

Query: 606 EVSNVLA 612
              NV+ 
Sbjct: 229 CCPNVVT 235


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 170/382 (44%), Gaps = 22/382 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  + +TY+S+M  LG+ R  E+++ +L+EM   GL  ++ TF I +     A +  +A
Sbjct: 220 GFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 279

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
             I + M+       V T   L++ L  ++    A+ +F K+K  R  P+  TY  LL  
Sbjct: 280 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDR 339

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +   ++L    + W+EM   G  PDVV   I+++ L K G   +A    +VM+ +G  PN
Sbjct: 340 FSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPN 399

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I                        K  A  Y   I  +G         +  +
Sbjct: 400 LHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 459

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M+ +G  P+ +  NA +  +       EA +I+  +   G  P   TYNM+MK Y + G
Sbjct: 460 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG 519

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   K+  EM+   C PD      LI  L   DR  EA+K    M E  +K  V+ YN
Sbjct: 520 EIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYN 579

Query: 578 KFAADLSRAGRSYVLDELAQKM 599
              A L + G+     EL + M
Sbjct: 580 TLLAGLGKNGKIQEAIELFEGM 601



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 154/322 (47%), Gaps = 24/322 (7%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            TYN ++  L  A   E    +  ++   G +  + T+   ++A+  + +  +   I++ M
Sbjct: 789  TYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEM 848

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
            + ++ +    T N ++  L ++    +A  L +D +  R F+P   TY  L+ G  +   
Sbjct: 849  SAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 908

Query: 364  LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
            L EA +++  M D G +P+   +NI++ G  K G+   A  LF+ M  +G  P++++Y++
Sbjct: 909  LYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 968

Query: 424  MIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE-R 462
            ++   C                      +   Y  +I G G   R++    L  EM++ R
Sbjct: 969  LVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSR 1028

Query: 463  GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            G  PD  TYN+LI  + I  M +EA +IY E+ R+G +P + T+N +++ Y  +G  E  
Sbjct: 1029 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1088

Query: 523  RKVWDEMIRRGCCPDDNSYTVL 544
              V+  M+  G  P+  +Y  L
Sbjct: 1089 YAVYQTMVTGGFSPNTGTYEQL 1110



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 170/398 (42%), Gaps = 18/398 (4%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           +LS + V  VL  F      +F +F          H + T N M+  L    + E M  +
Sbjct: 84  DLSSSEVARVLMSFPDTDS-SFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYV 142

Query: 268 LEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
            + M ++ +     T+       +     ++A      M ++ F     + N L+  L +
Sbjct: 143 FDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLK 202

Query: 327 SKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           S+   EA  ++ ++    F P+L TY+ L+ G  + +++     +  EM   G KP+V  
Sbjct: 203 SRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYT 262

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
             I +  L + GK ++A ++ + M  +G  P+V +YT++I   C                
Sbjct: 263 FTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTA-------------- 308

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            R++D   ++  +M+     PD +TY  L+      +  D   + + EM + G  P + T
Sbjct: 309 -RKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVT 367

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           + +++ +  + GN+       D M  +G  P+ ++Y  LI GL+   R  +A +  + M 
Sbjct: 368 FTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNME 427

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             G+K     Y  F     ++G S    E  +KM+  G
Sbjct: 428 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 465



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 152/372 (40%), Gaps = 45/372 (12%)

Query: 260  QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
             F T+ ++L  + + GL+  + +KI  N   +  ++   +   +LM     +AG+D    
Sbjct: 678  DFVTLCTLLPGVVKAGLIE-DAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVS 736

Query: 320  LLENLGRSKLPKE--------------------AQLLFDKLKHRF--TPNLTTYTVLLGG 357
              E L  + + ++                    A++LF+K        P L TY +L+GG
Sbjct: 737  FSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGG 796

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
                  +  A  V+ ++ + G  PDV  +N +L+   K GK  +  ++++ M A    PN
Sbjct: 797  LLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPN 856

Query: 418  VRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
              ++ I+I    K                       A  Y  LI G     R+     L 
Sbjct: 857  TITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF 916

Query: 457  KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            + M + GC P+   YN LI         D A  ++K MV+ G +P + TY++++      
Sbjct: 917  EGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMV 976

Query: 517  GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLD 575
            G  + G   + E+   G  PD   Y ++I GL    R  EA     EM + +G+   +  
Sbjct: 977  GRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYT 1036

Query: 576  YNKFAADLSRAG 587
            YN    +L  AG
Sbjct: 1037 YNSLILNLGIAG 1048



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 149/373 (39%), Gaps = 26/373 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +S TYN MM    +  + +  + +L EM E      +      +N    A    +A
Sbjct: 500 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEA 559

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M + K K  V T N LL  LG++   +EA  LF+ +  +   PN  T+  L   
Sbjct: 560 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 619

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A ++  +M+D G  PDV  +N ++ GL+K G+  +A+  F  MK K   P+
Sbjct: 620 LCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK-KLVYPD 678

Query: 418 VRSYTIMIWKFCKQNAA----------VYTC-----------LITGFGNRRRMDIVYDLL 456
             +   ++    K              +Y+C           L+        +D      
Sbjct: 679 FVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFS 738

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GFKPTIHTYNMIMKSYF 514
           + +   G   DG +    I     +       R+  E      G +P + TYN+++    
Sbjct: 739 ERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLL 798

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +    E+ + V+ ++   GC PD  +Y  L+       +  E ++  +EM     +   +
Sbjct: 799 EADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTI 858

Query: 575 DYNKFAADLSRAG 587
            +N   + L +AG
Sbjct: 859 THNIVISGLVKAG 871


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 164/371 (44%), Gaps = 24/371 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N  TYN+++  L RA   E      +EM + GL+    T+   +N         +A
Sbjct: 273 GCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQA 332

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M+       V   + L++   R     EA  +  ++      PN  TY  L+ G
Sbjct: 333 KCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRG 392

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++  +  A R+  +M   G+  D + +N+++EG L+   + +A  L   M+  G SPN
Sbjct: 393 LCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPN 452

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y+I+I   C                    K NA VY  LI+G+       +  + LK
Sbjct: 453 VYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLK 512

Query: 458 EMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M      PD   YN+LI  L  + KM DEA+  Y EM+  GF+P   TY  ++  Y   
Sbjct: 513 KMTRENLTPDLYCYNSLIIGLSNVGKM-DEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMA 571

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           GN E   ++  +M+  G  P+D  Y  ++ G    D   +    L+ MLEKG+      Y
Sbjct: 572 GNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLY 631

Query: 577 NKFAADLSRAG 587
                +LS +G
Sbjct: 632 GIVIHNLSSSG 642



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 200/448 (44%), Gaps = 35/448 (7%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDE-CGINL-SHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           IE  CKV D L S  + +E + +  C +N+ ++N ++  L R   A   AF +     D 
Sbjct: 250 IEAYCKVRD-LESAKKVVEEMRETGCSLNVVTYNTLIGGLCR-AGAIEEAFGYKKEMEDY 307

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
            G   +  TY ++++ L +  + +    +L+EM   GL+ ++  +   ++ F       +
Sbjct: 308 -GLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADE 366

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A  I + M+    +    T + L+  L +  ++ + +++L    K  +  +  TY +++ 
Sbjct: 367 AFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIE 426

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G  R  N  EA  + NEM   G  P+V  ++I++ GL +IG+   A  L E M A G  P
Sbjct: 427 GHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKP 486

Query: 417 NVRSYTIMIWKFCKQNAAVYTC--------------------LITGFGNRRRMDIVYDLL 456
           N   Y  +I  +C++ +    C                    LI G  N  +MD   +  
Sbjct: 487 NAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYY 546

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM E+G  P+  TY  LI    +    ++A ++  +M+ SG  P    Y  I++ YF++
Sbjct: 547 DEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKS 606

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            N E        M+ +G  PD+  Y ++I  L S      A   L  + + G+    L Y
Sbjct: 607 DNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIY 666

Query: 577 NKF------AADLSRAGRSYVLDELAQK 598
                    AAD+ +A    +LDE+A+K
Sbjct: 667 GSLISGFCKAADMEKA--VGLLDEMAKK 692



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 165/366 (45%), Gaps = 17/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + +  TY++++    + R  E+   ++EEM E G  L++ T+   +     A   ++A
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
               + M  Y       T   ++  L +   P +A+ L D++      PN+  Y+ L+ G
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R  N  EA ++  EM   G +P+ + ++ ++ GL K+G+   A ++ + M   G   +
Sbjct: 358 FMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMAD 417

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y ++I    +Q+            N+      + LL EM + G  P+  TY+ +I  
Sbjct: 418 TMTYNLVIEGHLRQH------------NKEE---AFLLLNEMRKGGISPNVYTYSIIING 462

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      + A  + ++M+  G KP    Y  ++  Y + G++ +  +   +M R    PD
Sbjct: 463 LCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPD 522

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
              Y  LI GL +  +  EA +Y +EMLEKG +     Y       S AG     ++L  
Sbjct: 523 LYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLH 582

Query: 598 KMRFSG 603
           +M  SG
Sbjct: 583 QMLNSG 588



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 157/375 (41%), Gaps = 28/375 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQF--ETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           K G+  ++ TYN  + I G  RQ   E    +L EM + G+  ++ T+ I +N      E
Sbjct: 411 KIGYMADTMTYN--LVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGE 468

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTV 353
            ++A  + E M     K        L+    R        + L    +   TP+L  Y  
Sbjct: 469 SERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNS 528

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G   V  + EA   ++EM++KGF+P+   +  ++ G    G    A +L   M   G
Sbjct: 529 LIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSG 588

Query: 414 PSPNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVY 453
            +PN   Y  ++  + K +                      +Y  +I    +   M    
Sbjct: 589 LNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAV 648

Query: 454 DLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            +L  +E+ G  PD L Y +LI    K   M ++AV +  EM + G +P I  YN ++  
Sbjct: 649 SVLSVIEKNGLVPDSLIYGSLISGFCKAADM-EKAVGLLDEMAKKGIEPGISCYNALIDG 707

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + ++ +    R +++ +I +G  P+  +YT LI G        +A     EML +G+   
Sbjct: 708 FCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPD 767

Query: 573 VLDYNKFAADLSRAG 587
              Y+  AA  S +G
Sbjct: 768 AFVYSVLAAGCSNSG 782



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 165/403 (40%), Gaps = 25/403 (6%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
            +++NLV++   R +H +  AF        K G + N  TY+ +++ L +  + E    +
Sbjct: 418 TMTYNLVIEGHLR-QHNKEEAFLLLNEM-RKGGISPNVYTYSIIINGLCQIGESERASGL 475

Query: 268 LEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           LE+M   GL  +   +   ++ +        A    + M +      +   N L+  L  
Sbjct: 476 LEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSN 535

Query: 327 SKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
                EA   +D+ L+  F PN  TY  L+ G+    NL +A ++ ++M++ G  P+   
Sbjct: 536 VGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFI 595

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
           +  +LEG  K           + M  KG  P+ R Y I+I                    
Sbjct: 596 YAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIE 655

Query: 432 ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                 ++ +Y  LI+GF     M+    LL EM ++G  P    YNALI          
Sbjct: 656 KNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDIS 715

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            A  I+  ++  G  P   TY  ++  Y + G+      +++EM+  G  PD   Y+VL 
Sbjct: 716 HARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLA 775

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            G  +     +A    EEM+ +G  A +  +N       + G+
Sbjct: 776 AGCSNSGDLQQALFITEEMIARGY-AIISSFNTLVHGFCKRGK 817



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 27/385 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N+  Y  ++S   R   F      L++M  + L   +  +   +   +   +  +A
Sbjct: 483 GLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEA 542

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +  ++ M +  F+    T   L+     +  L K  QLL   L     PN   Y  +L G
Sbjct: 543 IEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEG 602

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  NL +       M++KG  PD   + I++  L   G    A+ +  V++  G  P+
Sbjct: 603 YFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPD 662

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
              Y  +I  FCK                       + Y  LI GF     +    ++  
Sbjct: 663 SLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFN 722

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +  +G PP+ +TY  LI          +A+ +Y EM+  G  P    Y+++      +G
Sbjct: 723 SIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSG 782

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           + +    + +EMI RG     +S+  L+ G   + +  E  K+L  M++K +   +L   
Sbjct: 783 DLQQALFITEEMIARGYA-IISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVE 841

Query: 578 KFAADLSRAGR----SYVLDELAQK 598
                L  AG+      +  EL QK
Sbjct: 842 NIVIGLGEAGKLSEAHTIFVELQQK 866



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 57/257 (22%)

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR---------------- 419
           D+G +P V+  +++++   K G+  D  ++  +MK  G +P++R                
Sbjct: 168 DQGRRPVVL--DVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALD 225

Query: 420 -------------------SYTIMIWKFCKQ--------------------NAAVYTCLI 440
                              +Y+ +I  +CK                     N   Y  LI
Sbjct: 226 LLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLI 285

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G      ++  +   KEME+ G  PDG TY A+I  +  +  PD+A  +  EM  +G  
Sbjct: 286 GGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLM 345

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P +  Y+ ++  + + GN +   K+  EM   G  P+  +Y  LI GL    R G A + 
Sbjct: 346 PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRI 405

Query: 561 LEEMLEKGMKAPVLDYN 577
           L++M + G  A  + YN
Sbjct: 406 LKQMTKIGYMADTMTYN 422



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 139/336 (41%), Gaps = 44/336 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N   Y  ++    ++   E + S L+ M EKGL+     + I ++  +++   + A
Sbjct: 588 GLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAA 647

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           V++  ++ K            L+    ++   ++A  L D++ K    P ++ Y  L+ G
Sbjct: 648 VSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDG 707

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  ++  A  ++N +I KG  P+ V +  +++G  K G   DAI L+  M  +G +P+
Sbjct: 708 FCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPD 767

Query: 418 VRSYTIMIWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLK 457
              Y+++    C  +  +                    +  L+ GF  R ++      L 
Sbjct: 768 AFVYSVLAAG-CSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFLH 826

Query: 458 EMEERGCPPDGLTY-NALIKLMKIQKMP-------------------DEAVRIYKEMVRS 497
            M ++   P  LT  N +I L +  K+                    D    ++ +M+  
Sbjct: 827 VMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQ 886

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           G  P    +NMI +S+ + G  +    + D ++ +G
Sbjct: 887 GLVPLDVIHNMI-QSHCKQGYLDKALMLHDALVAKG 921


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 175/371 (47%), Gaps = 27/371 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++  YN ++++L    + + + S+  EMG +G+   + TF   M A   A + + A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-----TPNLTTYTV 353
           V + E M+         T   L++         EA L   ++K R      +    T  V
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEG-SIEAAL---RVKARMLEMGCSATKVTVNV 256

Query: 354 LLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           L+ G+C++  + +A G +  E+ D GF+PD + +N  + GL +      A+K+ +VM  +
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+V +Y I++   CK                 +++    +L +M +RGC PD  T+N
Sbjct: 316 GHDPDVFTYNIVVNCLCKNG---------------QLEEAKGILNQMVDRGCLPDITTFN 360

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +      +EA+ + +++   G  P ++T+N+++ +  + G+  +  ++++EM   
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           GC PD+ +Y  LI  L S  + G+A   L++M   G     + YN     L +  R    
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 593 DELAQKMRFSG 603
           +E+  +M   G
Sbjct: 481 EEVFDQMDLQG 491



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 23/337 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N          A+ + ++M +      V T N ++  L ++   +EA+ + +++
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P++TT+  L+   C    L EA  +  ++  KG  PDV   NI++  L K+G  
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A++LFE MK  G +P+  +Y  +I   C                     ++   Y  +
Sbjct: 408 HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G   + R++   ++  +M+ +G   + +T+N LI  +   K  D+A  +  +M+  G 
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGL 527

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P   TYN I+  Y + G+ +    + + M   G   D  +Y  LI GL    R+  A K
Sbjct: 528 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 587

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
            L  M  KGM+     YN     L R  R+ + D L+
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFR--RNNIRDALS 622



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 22/370 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+ ++ L +       + +++ M ++G    + T+ I +N      + ++A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M        + T N L+  L      +EA  L  ++  +  +P++ T+ +L+  
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +   A R++ EM + G  PD V +N +++ L  +GK   A+ L + M++ G   +
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+                    NA  +  LI G    +++D  ++L+ 
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  P+ +TYN+++     Q    +A  I + M  +GF+  + TY  ++    + G
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 580

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             ++  KV   M  +G  P   +Y  ++  L  ++   +A     EM E G     L Y 
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 640

Query: 578 KFAADLSRAG 587
                L R G
Sbjct: 641 IVFRGLCRGG 650



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 155/346 (44%), Gaps = 27/346 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N++++ L    + E  + +  ++  KG+   + TF I +NA     +   A+ +FE M
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                     T N L++NL    KL K   LL D        +  TY  ++ G C+   +
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V+++M  +G   + +  N +++GL K  K  DA +L   M ++G  PN  +Y  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  +CKQ                    +   Y  LI G     R  +   +L+ M  +G 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P    YN +++ +  +    +A+ +++EM   G  P   TY ++ +   + G     ++
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI--KE 655

Query: 525 VWD---EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +D   EM+ +G  P+ +S+ +L  GL++        + +E ++EK
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYNS+++   +    +    +LE M   G  + + T+   +N    A   + A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           + +   M     +      N +L++L R    ++A  LF ++      P+  TY ++  G
Sbjct: 586 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645

Query: 358 WCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            CR    + EA     EM+DKGF P+  +  ++ EGLL +G     I+  E++  K
Sbjct: 646 LCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 49/254 (19%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           D  G + N+ T+N+++  L + ++ +    ++ +M  +GL     T+   +  +    + 
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA  I E M    F+  V                                   TY  L+
Sbjct: 548 KKAADILETMTANGFEVDV----------------------------------VTYGTLI 573

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+      A +V   M  KG +P   A+N +L+ L +     DA+ LF  M   G  
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEP 633

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +Y I+    C+    +                 +D + EM ++G  P+  ++  L 
Sbjct: 634 PDALTYKIVFRGLCRGGGPIKEA--------------FDFMLEMVDKGFIPEFSSFRMLA 679

Query: 476 KLMKIQKMPDEAVR 489
           + +    M D  +R
Sbjct: 680 EGLLNLGMDDYFIR 693


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 162/343 (47%), Gaps = 17/343 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + +  +FE ++S+ E+M   G+   + T+ I +N F    +   A+A+   M 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++  + T++ LL     SK   +A  L D++ +  + P+  T+T L+ G        
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  + ++M+ +G +PD+V +  ++ GL K G    A+ L   M+A     NV  +  +I
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTII 265

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              CK                R +++  DL  EME +G  P+ +TYN+LI  +       
Sbjct: 266 DSLCKY---------------RHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWS 310

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A R+   M+     P + T+N ++ ++F+ G      K+ +EMI+R   PD  +Y +LI
Sbjct: 311 DASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLI 370

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            G    +R  EA +  + M+ K     +  YN       +  R
Sbjct: 371 NGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 174/406 (42%), Gaps = 57/406 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G +H+  TY+  ++   R  Q    +++L +M + G    + T    +N +  +K    A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           VA+ + M +  +K    T   L+  L       EA  L D++  R   P+L TY  ++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 358 WCR---------VKNLMEAGRV------WNEMID--------------------KGFKPD 382
            C+         + N MEA R+      +N +ID                    KG +P+
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV------- 435
           VV +N ++  L   G+ SDA +L   M  K  +PNV ++  +I  F K+   V       
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 436 -------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                        Y  LI GF    R+D    + K M  + C P+  TYN LI      K
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK 412

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             ++ V +++EM + G      TY  I++ +FQ G+ +  + V+ +M+      D  +Y+
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYS 472

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +L+ GL S  +   A    + + +  M+  +  YN     + +AG+
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 117/253 (46%), Gaps = 15/253 (5%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +L TY++ +  +CR   L  A  V  +M+  G++PD+V  + +L G     + SDA+ L 
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G  P+  ++T +I      N A                    L+ +M +RGC P
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEA---------------VALVDQMVQRGCQP 221

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TY  ++  +  +   D A+ +  +M  +  K  +  +N I+ S  +  + E+   ++
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLF 281

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            EM  +G  P+  +Y  LI  L +  R  +A + L  MLEK +   V+ +N       + 
Sbjct: 282 TEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341

Query: 587 GRSYVLDELAQKM 599
           G+    ++L ++M
Sbjct: 342 GKLVEAEKLHEEM 354



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 157/380 (41%), Gaps = 62/380 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY ++++ L +    +  +++L +M    +  ++  F   +++    +  + AV +F  M
Sbjct: 225 TYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM 284

Query: 306 NKYKFKAGVDT----INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
                +  V T    INCL  N GR      ++LL + L+ +  PN+ T+  L+  + + 
Sbjct: 285 ETKGIRPNVVTYNSLINCLC-NYGR--WSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA ++  EMI +   PD + +N+++ G     +  +A ++F+ M +K   PN+++Y
Sbjct: 342 GKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401

Query: 422 TIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  FCK                     N   YT +I GF      D    + K+M  
Sbjct: 402 NTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS 461

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS------------------------ 497
              P D +TY+ L+  +      D A+ I+K + +S                        
Sbjct: 462 NRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521

Query: 498 --------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI-GGL 548
                     KP + TYN ++         +    ++ +M   G  P+  +Y  LI   L
Sbjct: 522 AWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANL 581

Query: 549 ISQDRSGEAYKYLEEMLEKG 568
              DR+  A + ++EM   G
Sbjct: 582 RDCDRAASA-ELIKEMRSSG 600



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 164/379 (43%), Gaps = 28/379 (7%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID   +L   MEA   +  + +  N ++D L ++RH       F     +  G   N  T
Sbjct: 239 IDLALNLLNKMEAARIKANVVI-FNTIIDSLCKYRHVEVAVDLF--TEMETKGIRPNVVT 295

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YNS+++ L    ++     +L  M EK +  ++ TF   ++AF    +  +A  + E M 
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMI 355

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           +        T N L+          EA+ +F  +  +   PN+ TY  L+ G+C+ K + 
Sbjct: 356 QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVE 415

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +   ++ EM  +G   + V +  +++G  + G    A  +F+ M +     ++ +Y+I++
Sbjct: 416 DGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILL 475

Query: 426 WKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                    + N  +Y  +I G     ++   +DL   +  +   
Sbjct: 476 HGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK--- 532

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN +I  +  +++  EA  ++++M   G  P   TYN ++++  +  +     ++
Sbjct: 533 PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAEL 592

Query: 526 WDEMIRRGCCPDDNSYTVL 544
             EM   G   D ++ +++
Sbjct: 593 IKEMRSSGFVGDASTISLV 611



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 15/238 (6%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ +M+     P +V  N +L  + K+ K    I L E M+  G S ++ +Y+I I
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
             FC+               R ++ +   +L +M + G  PD +T ++L+      K   
Sbjct: 126 NCFCR---------------RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +AV +  +MV  G+KP   T+  ++   F          + D+M++RGC PD  +Y  ++
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL  +     A   L +M    +KA V+ +N     L +     V  +L  +M   G
Sbjct: 231 NGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG 288


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 173/363 (47%), Gaps = 24/363 (6%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N ++  L +  +F+TM  +  +M  +G   ++ T+   ++      +  KA  +F+ M +
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE 221

Query: 308 YKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
            K    V     L+  L G S++  EA+ +F  +++    PNL TY  ++ G+C++ ++ 
Sbjct: 222 KKIFPTVVIYTILIRGLCGESRI-SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ EM+  G  P+VV   I+++GL K  +   A K    M + G  PN+  Y  +I
Sbjct: 281 KALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLI 340

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             +CK                     +   Y+ LI G     RM+    LL+EM+++G  
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYN LI     +   ++A+ +  +M   G +P I T++ ++  Y + G  E    +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + EM+ +G  PD  +YT LI G      + EA++  +EM E G+   V   +     L +
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520

Query: 586 AGR 588
            GR
Sbjct: 521 DGR 523



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 155/335 (46%), Gaps = 20/335 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AFR F    +K  F         +  + G +R  E   SM   M   G+L ++ T+   M
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE-SMFRTMRNSGMLPNLYTYNTMM 270

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFT 345
           + +      KKA+ +++ M        V T   L++ L ++ ++    + L D       
Sbjct: 271 DGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV 330

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+  Y  L+ G+C+  NL EA  + +E+      PDV  ++I+++GL  + +  +A  L
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + MK KG  PN  +Y  +I  +CK+            GN   M+   ++  +M E+G  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKE------------GN---MEKAIEVCSQMTEKGIE 435

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P+ +T++ LI    K  KM + A+ +Y EMV  G  P +  Y  ++  +F+ GN +   +
Sbjct: 436 PNIITFSTLIDGYCKAGKM-EAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +  EM   G  P+  + + LI GL    R  +A K
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 24/298 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+MM    +    +  + + +EM   GLL ++ TF I ++      E   A
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
                 M  +     +   NCL++   ++    EA  L  ++ KH   P++ TY++L+ G
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C V  + EA  +  EM  KGF P+ V +N +++G  K G    AI++   M  KG  PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +++ +I  +CK                     +   YT LI G          + L K
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           EM+E G  P+  T + LI  +       +A++++  + ++G   T    N + +S +Q
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDRSLYQ 553



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 160/400 (40%), Gaps = 43/400 (10%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A   F     +   A N + Y++++ +L  A+ +     ++ ++              + 
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDL--------------IQ 98

Query: 288 AFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344
               ++  +   ++F ++++    KF   V     L+       L +EA  ++ K+    
Sbjct: 99  CLQNSRRSRICCSVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMD--V 154

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P +    ++L G  +        +V+ +M+ +G  P+VV +  +++G  + G    A +
Sbjct: 155 LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           LF+ M  K   P V  YTI+I   C +                    N   Y  ++ G+ 
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC 274

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               +    +L +EM   G  P+ +T+  LI  L K  +M   A +   +M   G  P I
Sbjct: 275 KIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMV-SARKFLIDMASFGVVPNI 333

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             YN ++  Y + GN      +  E+ +    PD  +Y++LI GL   DR  EA   L+E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M +KG     + YN       + G      E+  +M   G
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKG 433


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 168/384 (43%), Gaps = 25/384 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +S  Y+ M+S L  A + +  + +L+E+ EKGL LS+  F   + A++ A    KA
Sbjct: 417 GLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKA 476

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
              + +M +  F     T N LL  L R    +EA+ LL+  L+  F  N   YTVLL G
Sbjct: 477 FEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDG 536

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + ++ NL  A  +W EM ++G  PD VA   +++GL K G   +A ++F  M A G  PN
Sbjct: 537 YFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPN 596

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   C                      +   +  +I GF  R +M    +   
Sbjct: 597 NFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFL 656

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M+  G  PD  T+N LI    K   M   A  I  +M   G  P I TYN  M  Y + 
Sbjct: 657 DMQRIGLLPDIFTFNILIGGYCKAFDMVG-AGEIVNKMYSCGLDPDITTYNTYMHGYCRM 715

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                   + D++I  G  PD  +Y  ++ G+ S D    A     ++L+ G    V+  
Sbjct: 716 RKMNQAVIILDQLISAGIVPDTVTYNTMLSGICS-DILDRAMILTAKLLKMGFIPNVITT 774

Query: 577 NKFAADLSRAGRSYVLDELAQKMR 600
           N   +   + G         QK+R
Sbjct: 775 NMLLSHFCKQGMPEKALIWGQKLR 798



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 169/415 (40%), Gaps = 62/415 (14%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV--SMLEEMGEKGLLSME--TFKI 284
           F+   + G +P    ++ T+N+M  I G  RQ   +V  S+L  M  K + S +  TF I
Sbjct: 235 FKDMIFKGPRP----SNLTFNAM--ICGFCRQHRVVVGESLLHLM-PKFMCSPDVVTFNI 287

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR- 343
            +NA         A+    LM +   +  V T   +L  L R     EA+ LFD ++   
Sbjct: 288 LINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMG 347

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             PN   Y  L+ G+ + + + +A  ++ EM   G  PD V  NI++ G  K G+  D+ 
Sbjct: 348 IAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSD 407

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +L + +   G   +   Y +M+   C                  R+D    LL+E+ E+G
Sbjct: 408 RLLKDLIVSGLFLDSSLYDVMVSSLCWAG---------------RLDEAMKLLQELLEKG 452

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT------------------ 505
                + +N+LI       + D+A   Y+ MVR GF P+  T                  
Sbjct: 453 LTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEAR 512

Query: 506 -----------------YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
                            Y +++  YF+  N E  + +W EM  RG  PD  ++T LI GL
Sbjct: 513 ILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGL 572

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                  EAY+   EM   G       YN     L   GR     +L ++MR  G
Sbjct: 573 SKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKG 627



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 156/388 (40%), Gaps = 22/388 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   +  T+ +++  L R         + + + + G+  +   +   M+ +  A+E  
Sbjct: 310 RSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVA 369

Query: 297 KAVAIFELMNKYKFKAGVDTINCLL-ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  ++E M          T N L+  +    ++    +LL D +      + + Y V++
Sbjct: 370 QASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMV 429

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C    L EA ++  E+++KG    VVA N ++    + G    A + + +M   G +
Sbjct: 430 SSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFT 489

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+  +   ++   C++                    N   YT L+ G+     ++    L
Sbjct: 490 PSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFL 549

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            KEM+ERG  PD + + ALI  +      +EA  ++ EM   GF P    YN +++    
Sbjct: 550 WKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCD 609

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G      K+  EM ++G   D  ++ ++I G   + +   A +   +M   G+   +  
Sbjct: 610 CGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFT 669

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +N       +A       E+  KM   G
Sbjct: 670 FNILIGGYCKAFDMVGAGEIVNKMYSCG 697



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 124/291 (42%), Gaps = 16/291 (5%)

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           D ++ L+  +G  +  K    ++      +  + +    LL G+  V    EA  V   M
Sbjct: 145 DVVSWLIARVGTGRTNKIVDFMWRN-HAMYESDFSVLNTLLRGFLNVGMGFEALEVLRMM 203

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
              G +P + +  I+L  LL+IG      KLF+ M  KGP P+  ++  MI  FC+Q+  
Sbjct: 204 RGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQH-- 261

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                        R+ +   LL  M +  C PD +T+N LI    I      A+     M
Sbjct: 262 -------------RVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLM 308

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           VRSG +P++ T+  I+ +  + GN    RK++D +   G  P+   Y  L+ G       
Sbjct: 309 VRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREV 368

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            +A    EEM   G+    + +N       + GR    D L + +  SG F
Sbjct: 369 AQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLF 419


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 172/381 (45%), Gaps = 26/381 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M+++L   G+ ++ +  V  +E  G K   ++ T+   ++ + ++   + A AI  
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKP--NIVTYNTIVHGYCSSGRVEAADAILT 280

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
            M + K +    T   L+  + +    +EA  +F+++  +   P+   Y  L+ G+C   
Sbjct: 281 TMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKG 340

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           NL  A    +EM+ KG  P +  +N ++  L    +  +A  + + ++ KG SP+  +Y 
Sbjct: 341 NLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN 400

Query: 423 IMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  +C                    K     YT L+     + RM    DL K++   
Sbjct: 401 ILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NALI           A  + K+M R    P   T+N IM+ + + G  E  
Sbjct: 461 GVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEA 520

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R+++DEM RRG  PD  S+  LI G   +    +A++   EML+ G    VL YN     
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQG 580

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L +     + +EL ++M   G
Sbjct: 581 LCKNQEGDLAEELLKEMVSKG 601



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 17/328 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           +S TY S++S + +  + E    + EEM +KGL  S   +   ++ F        A A  
Sbjct: 290 DSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYK 349

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M K      + T N L+  L   +   EA+ +  +++ +  +P+  TY +L+ G+CR 
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRC 409

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N  +A  + +EM+  G KP    +  +L  L K  +  +A  LF+ + ++G  P+    
Sbjct: 410 ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD---- 465

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                      A ++  LI G  +   +   ++LLK+M+    PPD +T+N +++    +
Sbjct: 466 -----------AIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCRE 514

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              +EA  ++ EM R G KP   ++N ++  Y + G+ +   +V +EM+  G  P   +Y
Sbjct: 515 GKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTY 574

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             L+ GL        A + L+EM+ KGM
Sbjct: 575 NALVQGLCKNQEGDLAEELLKEMVSKGM 602



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 164/357 (45%), Gaps = 24/357 (6%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKI 284
           R  F F   + D+ GF  +S  ++ ++       + +        M EKG+L ++ET   
Sbjct: 133 REIFEFLAASRDRLGF-KSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNS 191

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344
            ++ F      + A  ++  M + + K+ V T N ++  L +    K+A+   D + H  
Sbjct: 192 LLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAK---DFVGHME 248

Query: 345 T----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           T    PN+ TY  ++ G+C    +  A  +   M  +  +PD   +  ++ G+ K G+  
Sbjct: 249 TSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLE 308

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +A K+FE M  KG  P+               A +Y  LI GF N+  +D+      EM 
Sbjct: 309 EASKIFEEMVQKGLRPS---------------AVIYNTLIDGFCNKGNLDMASAYKDEML 353

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           ++G  P   TYN+LI  + +++  DEA  + KE+   G  P   TYN+++  Y +  N +
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
               + DEM+  G  P   +YT L+  L  ++R  EA    +++  +G+    + +N
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFN 470



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 22/271 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G +    TYNS++  L   ++ +    M++E+ EKG+     T+ I +N +      K
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA  + + M     K    T   LL  L +    KEA  LF K+      P+   +  L+
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALI 473

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C   N+  A  +  +M      PD V  N +++G  + GK  +A +LF+ MK +G  
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533

Query: 416 PNVRSYTIMIWKFCKQ------------------NAAV--YTCLITGFGNRRRMDIVYDL 455
           P+  S+  +I  + ++                  N  V  Y  L+ G    +  D+  +L
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           LKEM  +G  PD  TY  LI+ +    +PDE
Sbjct: 594 LKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 63/159 (39%)

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           G G    +  +++ L    +R      + ++ LIK        DEA   +  M   G  P
Sbjct: 125 GGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           TI T N ++  + +    E    ++ EM R        ++ ++I  L  + +  +A  ++
Sbjct: 185 TIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV 244

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             M   G+K  ++ YN        +GR    D +   M+
Sbjct: 245 GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 25/398 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN ++ +L +  +      +L EM  +G+      +   ++ F        A
Sbjct: 318 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 377

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             +F+ M K K      T   ++  L ++    EA  LF ++   R  P+  TYT L+ G
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + EA  + N+M+  G  P++V +  + +GL K G+   A +L   M  KG   N
Sbjct: 438 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 497

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  ++   CK                     +A  YT L+  +   R M   ++LL+
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M +R   P  +T+N L+    +  M ++  ++ K M+  G  P   TYN ++K Y    
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N     +++  M  +G  PD N+Y +LI G        EA+    +M+ KG    V  YN
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 677

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF---EVSNVLA 612
                  +  +     EL ++MR  G     E+ N+ A
Sbjct: 678 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFA 715



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 15/222 (6%)

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A +V+ E  + G   +  ++NI+   L ++G+  +A +L   M+ +G  P+V SY+ +I 
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
            +C+             G  +R   V  L++EM+ +G  P+  TYN +I L+       E
Sbjct: 297 GYCQ------------VGELQR---VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAE 341

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A R+ +EM+  G  P    Y  ++  + + GN     +++DEM +R   PD  +YT +I 
Sbjct: 342 AERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVIC 401

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           GL    R  EA K   EM+ K ++   + Y        + G+
Sbjct: 402 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 443



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-IGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           L EA +++++M++ G    V + N+ +  L + +     A+K+F      G   N  SY 
Sbjct: 198 LDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYN 257

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLM 478
           I+    C+    V                 + LL +ME RGC PD ++Y+ +I    ++ 
Sbjct: 258 IITHSLCQLGRVVEA---------------HQLLLQMELRGCIPDVISYSTVINGYCQVG 302

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
           ++Q++    +++ +EM   G KP  +TYN ++    +TG      +V  EMI  G  PD 
Sbjct: 303 ELQRV----LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG 358

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
             YT LI G         AY+  +EM ++ +    + Y      L + GR    D+L  +
Sbjct: 359 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 599 M 599
           M
Sbjct: 419 M 419



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%)

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A++++ E    G      +YN+I  S  Q G      ++  +M  RGC PD  SY+ +I 
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G           K +EEM  KG+K     YN     L + G+    + + ++M   G
Sbjct: 297 GYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 175/377 (46%), Gaps = 26/377 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQF-ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           K G+  N+   N ++  L  A++  E M  +++ M E G    + ++   +  F   K  
Sbjct: 122 KSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRA 181

Query: 296 KKAVAIFELMNKYKFKA---GVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTY 351
           ++A+ +  +M   + ++    V +   ++       ++ K   L  + +     PN+ TY
Sbjct: 182 EEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTY 241

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           T ++ G C+ + +  A  V+ +MIDKG KPD   +N ++ G L IGK  + +++ E M A
Sbjct: 242 TTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA 301

Query: 412 KGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDI 451
            G  P+  +Y  ++   C                    K N A+Y  LI G+  +  +  
Sbjct: 302 HGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSE 361

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++DLL  M E G  PD   +N +      + M DEA+ I+ +M + G  P +  Y  ++ 
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALID 421

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           +  + G  +     +++M+  G  P+   +  L+ GL + D+  +A ++  EML +G++ 
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRP 481

Query: 572 PVLDYNKFAADLSRAGR 588
            V+ +N    +L   G+
Sbjct: 482 DVVFFNTILCNLCTKGQ 498



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 164/404 (40%), Gaps = 22/404 (5%)

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNA 288
           RF   +  + G   N   Y  ++           M  +L  M E GL      F I   A
Sbjct: 328 RFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPN 347
           +A      +A+ IF  M +      V     L++ L +     +A L F+++ +    PN
Sbjct: 388 YAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPN 447

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           +  +  L+ G C V    +A   + EM+++G +PDVV  N +L  L   G+   A +L +
Sbjct: 448 IFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLID 507

Query: 408 VMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRR 447
           +M+  G  P V SYT +I   C                    K +   Y  L+ G+    
Sbjct: 508 LMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAG 567

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R+D  Y + +EM   G  P  +TY+ ++  +   +   EA  +Y  M+ SG +  I  YN
Sbjct: 568 RIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYN 627

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +I+    +    +   K++  +  +    +  ++ ++IG L    R+ +A      +   
Sbjct: 628 IILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSY 687

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           G+   V  Y   A +L   G     D+L   M  SG    S +L
Sbjct: 688 GLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRML 731



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 35/314 (11%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENL----GRSKLPKEAQL---LFDKLKH----RFTP 346
           A+ +F+ +  +   A V   N LL  +    GR     E++L   LF+++      + TP
Sbjct: 33  ALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTP 92

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK-L 405
           +  TY++L+G +CR+  L      +  ++  G++ + +  N +L+GL    +  +A+  L
Sbjct: 93  DPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDIL 152

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ-----------------------NAAVYTCLITG 442
            + M   G +P+V SY  ++  FC +                       N   Y  +I G
Sbjct: 153 VKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVING 212

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           F    ++D  Y+L  EM +RG  P+ +TY  +I  +   ++ D A  ++++M+  G KP 
Sbjct: 213 FFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPD 272

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN ++  Y   G ++   ++ +EM   G  PD  +Y  L+  L +  R  EA    +
Sbjct: 273 NDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFD 332

Query: 563 EMLEKGMKAPVLDY 576
            M+ KG+K  V  Y
Sbjct: 333 SMIRKGIKPNVAIY 346



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 159/386 (41%), Gaps = 24/386 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G + +   Y +++  L +  + +  V    +M  +G+  ++  F   +       + +
Sbjct: 406 QQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWE 465

Query: 297 KAVAI-FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
           KA    FE++N+   +  V   N +L NL       +AQ L D ++   T P + +YT L
Sbjct: 466 KAKEFYFEMLNQ-GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTL 524

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +GG C V  + EA +  + M+  G KPD   +N +L G  + G+  DA  +F  M   G 
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 415 SPNVRSYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           +P V +Y+                     MI    + N  +Y  ++ G      +D  + 
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFK 644

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L + +  +    +  T+N +I  +      ++A+ ++  +   G  P + TY +I ++  
Sbjct: 645 LFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLI 704

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E    ++  M + G  P+      L+  L+ +     A  YL ++ EK       
Sbjct: 705 EEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEAS 764

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMR 600
                 + LSR    +    L +K R
Sbjct: 765 TTAMLISLLSRDEYHHHATSLPEKYR 790


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 191/419 (45%), Gaps = 28/419 (6%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-DKPGFAHNSRTYNSMMSI 254
           R +   L +  I  + +LV  V++R  +    A +FF       P + H+  +++  + I
Sbjct: 54  RTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDI 113

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
             R R F +  +++  M    L  S +T  I    +A+  +  +AV  F  M ++  +  
Sbjct: 114 AARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQD 173

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           + + N LL+ L +SK  + A  L   L  RF P+  TY +L  G+C +K    A RV  E
Sbjct: 174 LHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKE 233

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----- 428
           M+ +G +P +V +N ML+G  +  +  +A + +  MK +    +V +YT +I  F     
Sbjct: 234 MVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGD 293

Query: 429 ---------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYN 472
                             N A Y  LI     +  ++    + +EM   G C P+ +TYN
Sbjct: 294 VKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYN 353

Query: 473 ALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            +I+ L  +  M + A+   + M   G +  + TYN++++ +   G  E   +V+ +M  
Sbjct: 354 VVIRGLCHVGDM-ERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGD 412

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGE---AYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             C P+ ++Y VLI  +  + +S +   A K L +M+++G       +N+    L   G
Sbjct: 413 GSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITG 471


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 184/367 (50%), Gaps = 19/367 (5%)

Query: 211 HNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
           +N ++D + + +H    AF  +     K  F  +  TYN+++S      + +  + +  +
Sbjct: 336 YNTIIDGMCKDKHVN-DAFDLYSEKVSKRIFP-DVFTYNALISGFCIVGKLKDAIDLFNK 393

Query: 271 MGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           M  K ++  + TF I ++ F      K+A  +  +M K   K  V T + L++       
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 330 PKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             +A+ +F+ + HR  T N+ +Y +++ G+C++K + EA +++ EM  K   PDV+ ++ 
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           +++GL K G+ S A++L + M  +G  P++ +Y  ++   CK               +  
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCK---------------KHH 558

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +D    LL +++ +G  PD  TY  L+K +      ++A +++++++  G+   ++ Y +
Sbjct: 559 VDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTV 618

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++ +   G ++    +  +M   GC PD  +Y ++I  L  +D +  A K L EM+ +G
Sbjct: 619 MIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRG 678

Query: 569 MKAPVLD 575
           +   + D
Sbjct: 679 LLVALTD 685



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 152/311 (48%), Gaps = 21/311 (6%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V T N L+         K+A  LF+K+  +   P++ T+++L+ G+C+  N+ EA  V  
Sbjct: 368 VFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLA 427

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK-- 430
            M+ +  KPDVV ++ +++G   + + + A  +F  M  +G + NV+SY IMI  FCK  
Sbjct: 428 MMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIK 487

Query: 431 ------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   Y+ LI G     R+    +L+ EM  RG  PD +TYN
Sbjct: 488 MVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           +++  +  +   D+A+ +  ++   G +P ++TY +++K   Q+G  E  RKV+++++ +
Sbjct: 548 SILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK 607

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G   D  +YTV+I G   +    EA   L +M E G       Y      L     + + 
Sbjct: 608 GYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMA 667

Query: 593 DELAQKMRFSG 603
           ++L ++M   G
Sbjct: 668 EKLLREMIMRG 678



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 22/286 (7%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           LK+ + P+  T T  + G+C    + +A    +++I  GF  D V++  ++ GL K+G+ 
Sbjct: 255 LKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGET 314

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A++L      K   P+V  Y  +I   CK                     +   Y  L
Sbjct: 315 KAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNAL 374

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I+GF    ++    DL  +M  +   PD  T++ L+          EA  +   M++   
Sbjct: 375 ISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSI 434

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP + TY+ +M  Y           +++ M  RG   +  SY ++I G        EA K
Sbjct: 435 KPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMK 494

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMRFSGK 604
             +EM  K +   V+ Y+     L ++GR SY L EL  +M + G+
Sbjct: 495 LFKEMHHKQIFPDVITYSSLIDGLCKSGRISYAL-ELVDEMHYRGQ 539


>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera]
          Length = 493

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 178/390 (45%), Gaps = 31/390 (7%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           I  + ++V DVL         A  FF WAG      H++ ++N ++ +LG+  +FE M  
Sbjct: 41  IPPTPDVVQDVLRLSYSNXSAAVEFFRWAGLTR--KHSAHSWNLIVDLLGKNSKFEPMWD 98

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-- 324
            +  M  +G LS+  F     ++ +     +A+  FE+M++Y     V  +N LL  +  
Sbjct: 99  AIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICC 158

Query: 325 --GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP 381
             G + L  E    F+K+K + TP+  T+ +LL GW R  N+ +A   + EM+ + G+ P
Sbjct: 159 EGGSTTLALE---FFEKIKVKITPDGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSP 215

Query: 382 -DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR---------------SYTIMI 425
            ++VA+N +L  L++  +  +AIK   VMK KG  P ++               ++ I +
Sbjct: 216 QNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIAL 275

Query: 426 WKFC-----KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           W          N  +Y  +I    N    D  +  L EM   G   D  TYN + + +  
Sbjct: 276 WDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLDEMVFYGVFADSFTYNMIFQCLVK 335

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            K   EA + + EM+++   P        +   F   + EM  ++W  MI     P D S
Sbjct: 336 HKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGDDPEMAIEIWSYMIENSLSPVDES 395

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
              L+ GL +  R  +  ++ E+ML+  +K
Sbjct: 396 ANALLIGLCNLRRFSDYRRFAEDMLDMKIK 425



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           +G+ ++AI  FEVM   G  P+V +   ++   C +  +  T L   F  + ++ I    
Sbjct: 124 VGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICCEGGS--TTLALEFFEKIKVKIT--- 178

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV-RSGFKP-TIHTYNMIMKSY 513
                     PDG T+  L++  + +    +A   + EMV R G+ P  +  YN ++ + 
Sbjct: 179 ----------PDGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTL 228

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +    E   K    M  +GC P    ++  +  L+ Q+ S  A    + ML+ G    +
Sbjct: 229 VRGMEVEEAIKFLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNL 288

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           + YN     L  AG +        +M F G F
Sbjct: 289 MMYNTIIGILCNAGDADNAFRFLDEMVFYGVF 320


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 175/371 (47%), Gaps = 27/371 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++  YN ++++L    + + + S+  EMG +G+   + TF   M A   A + + A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-----TPNLTTYTV 353
           V + E M+         T   L++         EA L   ++K R      +    T  V
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEG-SIEAAL---RVKARMLEMGCSATKVTVNV 256

Query: 354 LLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           L+ G+C++  + +A G +  E+ D GF+PD + +N  + GL +      A+K+ +VM  +
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+V +Y I++   CK                 +++    +L +M +RGC PD  T+N
Sbjct: 316 GHDPDVFTYNIVVNCLCKNG---------------QLEEAKGILNQMVDRGCLPDITTFN 360

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +      +EA+ + +++   G  P ++T+N+++ +  + G+  +  ++++EM   
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           GC PD+ +Y  LI  L S  + G+A   L++M   G     + YN     L +  R    
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 593 DELAQKMRFSG 603
           +E+  +M   G
Sbjct: 481 EEVFDQMDLQG 491



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 23/337 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N          A+ + ++M +      V T N ++  L ++   +EA+ + +++
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P++TT+  L+   C    L EA  +  ++  KG  PDV   NI++  L K+G  
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A++LFE MK  G +P+  +Y  +I   C                     ++   Y  +
Sbjct: 408 HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G   + R++   ++  +M+ +G   + +T+N LI  +   K  D+A  +  +M+  G 
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGL 527

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P   TYN I+  Y + G+ +    + + M   G   D  +Y  LI GL    R+  A K
Sbjct: 528 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 587

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
            L  M  KGM+     YN     L R  R+ + D L+
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFR--RNNIRDALS 622



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 22/370 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+ ++ L +       + +++ M ++G    + T+ I +N      + ++A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M        + T N L+  L      +EA  L  ++  +  +P++ T+ +L+  
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +   A R++ EM + G  PD V +N +++ L  +GK   A+ L + M++ G   +
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+                    NA  +  LI G    +++D  ++L+ 
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  P+ +TYN+++     Q    +A  I + M  +GF+  + TY  ++    + G
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 580

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             ++  KV   M  +G  P   +Y  ++  L  ++   +A     EM E G     L Y 
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 640

Query: 578 KFAADLSRAG 587
                L R G
Sbjct: 641 IVFRGLCRGG 650



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 155/346 (44%), Gaps = 27/346 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N++++ L    + E  + +  ++  KG+   + TF I +NA     +   A+ +FE M
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                     T N L++NL    KL K   LL D        +  TY  ++ G C+   +
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V+++M  +G   + +  N +++GL K  K  DA +L   M ++G  PN  +Y  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 537

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  +CKQ                    +   Y  LI G     R  +   +L+ M  +G 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P    YN +++ +  +    +A+ +++EM   G  P   TY ++ +   + G     ++
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI--KE 655

Query: 525 VWD---EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +D   EM+ +G  P+ +S+ +L  GL++        + +E ++EK
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYNS+++   +    +    +LE M   G  + + T+   +N    A   + A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           + +   M     +      N +L++L R    ++A  LF ++      P+  TY ++  G
Sbjct: 586 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645

Query: 358 WCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            CR    + EA     EM+DKGF P+  +  ++ EGLL +G     I+  E++  K
Sbjct: 646 LCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 49/254 (19%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           D  G + N+ T+N+++  L + ++ +    ++ +M  +GL     T+   +  +    + 
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA  I E M    F+  V                                   TY  L+
Sbjct: 548 KKAADILETMTANGFEVDV----------------------------------VTYGTLI 573

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+      A +V   M  KG +P   A+N +L+ L +     DA+ LF  M   G  
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEP 633

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +Y I+    C+    +                 +D + EM ++G  P+  ++  L 
Sbjct: 634 PDALTYKIVFRGLCRGGGPIKEA--------------FDFMLEMVDKGFIPEFSSFRMLA 679

Query: 476 KLMKIQKMPDEAVR 489
           + +    M D  +R
Sbjct: 680 EGLLNLGMDDYFIR 693


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 167/359 (46%), Gaps = 16/359 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+  +M  + +  +  +F I M  F +  +   A++ F  + 
Sbjct: 81  FCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKIT 140

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           K  F   V T + LL  L       EA  LF ++     PN+ T+T L+ G CR   ++E
Sbjct: 141 KLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM---CKPNVVTFTTLMNGLCREGRVVE 197

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIMI 425
           A  + + M++ G +P+ + +  +++G+ K+G    A+ L   M+      PNV     +I
Sbjct: 198 AVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNV-----VI 252

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMP 484
           W   ++     TC+I GF +  R      LL+EM ER    PD +TYNALI     +   
Sbjct: 253 WPLERR-----TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKF 307

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  +Y EM+  G  P+  TY+ ++  + +    +    ++  M  +GC PD  ++  L
Sbjct: 308 FEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTL 367

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           I G     R  +  K L EM E G+ A  + Y        + G      +L Q+M  SG
Sbjct: 368 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSG 426



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 188/417 (45%), Gaps = 52/417 (12%)

Query: 181 IERVCKVIDELFSLD--RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-- 236
           ++ +CK+ D + +L+  R ME V      ++  N+V+  LER    R      FC +G  
Sbjct: 221 VDGMCKMGDTVSALNLLRKMEEV-----SHIKPNVVIWPLER----RTCMINGFCSSGRW 271

Query: 237 -----------DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKI 284
                      ++   + +  TYN++++   +  +F     + +EM  +G++ S  T+  
Sbjct: 272 SEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSS 331

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHR 343
            ++ F        A  +F LM        + T N L+    R+K   +  +LL +  +  
Sbjct: 332 MIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG 391

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
              N  TYT L+ G+C+V +L  A  +  EM+  G  P+VV  N +L+GL   GK  DA+
Sbjct: 392 LVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDAL 451

Query: 404 KLFEVMKAK-----------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           ++F+ M+             G  P+V++Y I               LI+G  N  +    
Sbjct: 452 EMFKAMQKSKMDIDASHPFNGVEPDVQTYNI---------------LISGLINEGKFLEA 496

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            +L +EM  RG  PD +TYN++I  +  Q   DEA +++  M    F P + T+  ++  
Sbjct: 497 EELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 556

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           Y + G  + G +++ EM RRG   +  +Y  LI G         A    +EM+  G+
Sbjct: 557 YCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGV 613



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 168/385 (43%), Gaps = 40/385 (10%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 178 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 237

Query: 303 ELMNKYK-FKAGV-----DTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVL 354
             M +    K  V     +   C++     S    EAQ L  ++  R   +P++ TY  L
Sbjct: 238 RKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNAL 297

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  + +     EA  +++EM+ +G  P  + ++ M++G  K  +   A  +F +M  KG 
Sbjct: 298 INAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 357

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
           SP++ ++  +I  +C+                     N   YT LI GF     ++   D
Sbjct: 358 SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQD 417

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-----------GFKPTI 503
           LL+EM   G  P+ +T N L+  +       +A+ ++K M +S           G +P +
Sbjct: 418 LLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDV 477

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TYN+++      G +    ++++EM  RG  PD  +Y  +I GL  Q R  EA +  + 
Sbjct: 478 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDS 537

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M  K     V+ +        +AGR
Sbjct: 538 MGSKSFSPNVVTFTTLINGYCKAGR 562



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 170/406 (41%), Gaps = 40/406 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-------LLSMETFKIAMNAFAAA 292
           G   N  TY +++  + +     + +++L +M E         +  +E     +N F ++
Sbjct: 209 GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSS 268

Query: 293 KERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTT 350
               +A  +  E++ + K    V T N L+    +     EA+ L+D++  R   P+  T
Sbjct: 269 GRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTIT 328

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y+ ++ G+C+   L  A  ++  M  KG  PD++  N ++ G  +  +  D IKL   M 
Sbjct: 329 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 388

Query: 411 AKGPSPNVRSYTIMIWKFCKQ---NAA---------------VYTC--LITGFGNRRRMD 450
             G   N  +YT +I  FC+    NAA               V TC  L+ G  +  ++ 
Sbjct: 389 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLK 448

Query: 451 IVYDLLKEMEE-----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
              ++ K M++            G  PD  TYN LI  +  +    EA  +Y+EM   G 
Sbjct: 449 DALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 508

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P   TYN ++    +    +   +++D M  +   P+  ++T LI G     R  +  +
Sbjct: 509 VPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 568

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
              EM  +G+ A  + Y        + G      ++ Q+M  SG +
Sbjct: 569 LFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVY 614



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 33/269 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + +  T+N++++   RA++ +  + +L EM E GL++   T+   ++ F    +   A
Sbjct: 356 GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA 415

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
             + + M        V T N LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 416 QDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEP 475

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + +N ++ GL K  +  +A ++F
Sbjct: 476 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMF 535

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
           + M +K  SPNV ++T +I  +CK                     NA  Y  LI GF   
Sbjct: 536 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKV 595

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALI 475
             ++   D+ +EM   G  PD +T   ++
Sbjct: 596 GNINGALDIFQEMMASGVYPDTITIRNML 624



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 93/328 (28%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G+  +K L +A  ++ +M+     P V+    ++  ++++G+    I L   M+ + 
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 414 PSPNVRSYTIMIWKF--------------------------------------------- 428
              N  S+TI++  F                                             
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM---- 478
                 CK N   +T L+ G     R+     LL  M E G  P+ +TY  ++  M    
Sbjct: 169 DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMG 228

Query: 479 -------KIQKMPD------------------------------EAVRIYKEMV-RSGFK 500
                   ++KM +                              EA ++ +EM+ R    
Sbjct: 229 DTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKIS 288

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TYN ++ ++ + G +    +++DEM+ RG  P   +Y+ +I G   Q+R   A   
Sbjct: 289 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              M  KG    ++ +N   A   RA R
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKR 376



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           ++T+ I ++      +  +A  ++E M          T N ++  L +     EA  +FD
Sbjct: 477 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFD 536

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
            +  + F+PN+ T+T L+ G+C+   + +   ++ EM  +G   + + +  ++ G  K+G
Sbjct: 537 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVG 596

Query: 398 KRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
             + A+ +F+ M A G  P+   +R+    +W
Sbjct: 597 NINGALDIFQEMMASGVYPDTITIRNMLTGLW 628


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 22/320 (6%)

Query: 267 MLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           + +EM   GL   E T+   M+ +    +R+K  A+FE M +   +  + T NCL+    
Sbjct: 60  VFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWC 119

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           R+   + A+ LFD++  R    N+ +Y  L+ G CR   L +A ++ + M  +G +P ++
Sbjct: 120 RTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSII 179

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
             N++++G  K GK S+A+  F  MKA G  P+  +Y ++I  FC+              
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      YT LI  F     M   +++L  ME+ G   D  TY  L++ + ++   
Sbjct: 240 KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNM 299

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A ++++ M   G +P+   Y+M++  Y + G+     K+  EM ++G  P+  SY + 
Sbjct: 300 KDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLT 359

Query: 545 IGGLISQDRSGEAYKYLEEM 564
           I  L   D+  EA   L++M
Sbjct: 360 IRVLCKDDKCQEAEALLDDM 379



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 336 LFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LF++++     PNL TY  L+G WCR      A  +++EM  +G   +VV++N ++ GL 
Sbjct: 95  LFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLC 154

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           + GK  DA KL ++M+ +G  P++ ++ +               L+ G+G   +M     
Sbjct: 155 RHGKLWDAAKLLDMMRTEGTRPSIITFNL---------------LVDGYGKAGKMSNALP 199

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
              +M+  G  P  +TYN LI      +    A R   +M   G +PT  TY +++ S+ 
Sbjct: 200 FFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFA 259

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +  +     ++   M + G   D ++Y VL+  L  +    +A K  + M EKG++   +
Sbjct: 260 RENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNV 319

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y+       R G SY   +L  +MR  G
Sbjct: 320 IYDMMIYGYGREGSSYKALKLIMEMRQKG 348



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 23/286 (8%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++T  T L+ G C+  ++ EA RV++EM   G  P+ V +  ++ G    G+R     LF
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
           E M+  G  PN+ +Y  +I ++C+                    +N   Y  LI G    
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            ++     LL  M   G  P  +T+N L+    K  KM + A+  + +M  +GF+P+  T
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSN-ALPFFNQMKAAGFQPSAVT 215

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YNM++  + +  +     +   +M  RG  P   +YT+LI     ++  G+A++ L  M 
Sbjct: 216 YNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGME 275

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           + G++     Y      L   G      +L Q M   G  E SNV+
Sbjct: 276 KAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKG-VEPSNVI 320



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 135/311 (43%), Gaps = 17/311 (5%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SM 279
           F H +R           + G   N  TYN ++    R  +FE   S+ +EM  +G++ ++
Sbjct: 84  FTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNV 143

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            ++   +       +   A  + ++M     +  + T N L++  G++     A   F++
Sbjct: 144 VSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203

Query: 340 LKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +K   F P+  TY +L+ G+CR +++  A R  ++M ++G +P  V + I+++   +   
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A ++   M+  G   +  +Y +++   C +            GN   M     L + 
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTYGVLVRALCME------------GN---MKDARKLFQS 308

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M E+G  P  + Y+ +I     +    +A+++  EM + G  P   +Y + ++   +   
Sbjct: 309 MGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDK 368

Query: 519 YEMGRKVWDEM 529
            +    + D+M
Sbjct: 369 CQEAEALLDDM 379



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 417 NVRSYTIMIWKFCKQNAAVY-----TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +VRS   M+ +  K   A       T L+ G      +     +  EM   G  P+ +TY
Sbjct: 17  DVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTY 76

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            AL+         ++   +++EM R G +P ++TYN ++  + +TG +E  R ++DEM  
Sbjct: 77  TALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPV 136

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           RG   +  SY  LI GL    +  +A K L+ M  +G +  ++ +N       +AG+   
Sbjct: 137 RGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSN 196

Query: 592 LDELAQKMRFSGKFEVSNV 610
                 +M+ +G F+ S V
Sbjct: 197 ALPFFNQMKAAG-FQPSAV 214


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 169/362 (46%), Gaps = 22/362 (6%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N ++  L +  +F+TM  +  +M  +G   ++ T+   ++      +  KA  +F+ M +
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE 221

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLME 366
            K    V     L+  L       EA+ +F  +++    PNL TY  ++ G+C++ ++ +
Sbjct: 222 KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKK 281

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  ++ EM+  G  P+VV   I+++GL K  +   A K    M + G  PN+  Y  +I 
Sbjct: 282 ALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            +CK                     +   Y+ LI G     RM+    LL+EM+++G  P
Sbjct: 342 GYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLP 401

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TYN LI     +   ++A+ +  +M   G +P I T++ ++  Y + G  E    ++
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            EM+ +G  PD  +YT LI G      + EA++  +EM E G+   V   +     L + 
Sbjct: 462 TEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKD 521

Query: 587 GR 588
           GR
Sbjct: 522 GR 523



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 30/350 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+MM    +    +  + + +EM   GLL ++ TF I ++      E   A
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
                 M  +     +   NCL++   ++    EA  L  ++ KH   P++ TY++L+ G
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C V  + EA  +  EM  KGF P+ V +N +++G  K G    AI++   M  KG  PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +++ +I  +CK                 +M+    L  EM  +G  PD + Y ALI  
Sbjct: 438 IITFSTLIDGYCKAG---------------KMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW----------- 526
                   EA R++KEM  +G  P + T + ++    + G      K++           
Sbjct: 483 HFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542

Query: 527 --DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
             +E+ R  C P+   YT LI GL +  R  +A K+  +M   G++  V 
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVF 592



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 155/335 (46%), Gaps = 20/335 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AFR F    +K  F         +  + G +R  E   SM   M   G+L ++ T+   M
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAE-SMFRTMRNSGMLPNLYTYNTMM 270

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFT 345
           + +      KKA+ +++ M        V T   L++ L ++ ++    + L D       
Sbjct: 271 DGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV 330

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+  Y  L+ G+C+  NL EA  + +E+      PDV  ++I+++GL  + +  +A  L
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + MK KG  PN  +Y  +I  +CK+            GN   M+   ++  +M E+G  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKE------------GN---MEKAIEVCSQMTEKGIE 435

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P+ +T++ LI    K  KM + A+ +Y EMV  G  P +  Y  ++  +F+ GN +   +
Sbjct: 436 PNIITFSTLIDGYCKAGKM-EAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +  EM   G  P+  + + LI GL    R  +A K
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 141/310 (45%), Gaps = 4/310 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N   YN ++    +A      +S+  E+ +  +L  + T+ I +         ++A
Sbjct: 328 GVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M K  F     T N L++   +   + K  ++     +    PN+ T++ L+ G
Sbjct: 388 DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   +  A  ++ EM+ KG  PDVVA+  +++G  K G   +A +L + M+  G  PN
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V + + +I   CK      +  I  F  +   D       E++   C P+ + Y ALI+ 
Sbjct: 508 VFTLSCLIDGLCKDGRI--SDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       +A + + +M  SG +P + T  +I++ +F+  +      +  ++++ G  P+
Sbjct: 566 LCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPN 625

Query: 538 DNSYTVLIGG 547
            + Y VL  G
Sbjct: 626 SSVYRVLAKG 635



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 160/400 (40%), Gaps = 43/400 (10%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A   F     +   A N + Y++++ +L  A+ +     ++ ++              + 
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDL--------------IQ 98

Query: 288 AFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344
               ++  +   ++F ++++    KF   V     L+       L +EA  ++ K+    
Sbjct: 99  CLQNSRRSRICCSVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMD--V 154

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P +    ++L G  +        +V+ +M+ +G  P+VV +  +++G  + G    A +
Sbjct: 155 LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           LF+ M  K   P V  YTI+I   C +                    N   Y  ++ G+ 
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC 274

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               +    +L +EM   G  P+ +T+  LI  L K  +M   A +   +M   G  P I
Sbjct: 275 KIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMV-SARKFLIDMASFGVVPNI 333

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             YN ++  Y + GN      +  E+ +    PD  +Y++LI GL   DR  EA   L+E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M +KG     + YN       + G      E+  +M   G
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKG 433



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 39/300 (13%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GF  N+ TYN+++    +    E  + +  +M EKG+  ++ TF   ++ +  A + +
Sbjct: 396 KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A+ ++  M           I  LL                        P++  YT L+ 
Sbjct: 456 AAMGLYTEM----------VIKGLL------------------------PDVVAYTALID 481

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G  +  N  EA R+  EM + G  P+V   + +++GL K G+ SDAIKLF  +   G   
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDT 539

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                  +    C  N  +YT LI G     R+        +M   G  PD  T   +I+
Sbjct: 540 TGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQ 599

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM--IRRGC 534
                    + + +  ++++ G  P    Y ++ K Y ++G  +   +  +++  I  GC
Sbjct: 600 GHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIGC 659


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 173/363 (47%), Gaps = 24/363 (6%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N ++  L +  +F+TM  +  +M  +G   ++ T+   ++      +  KA  +F+ M +
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE 221

Query: 308 YKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
            K    V     L+  L G S++  EA+ +F  +++    PNL TY  ++ G+C++ ++ 
Sbjct: 222 KKIFPTVVIYTILIRGLCGESRI-SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVK 280

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ EM+  G  P+VV   I+++GL K  +   A K    M + G  PN+  Y  +I
Sbjct: 281 KALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLI 340

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             +CK                     +   Y+ LI G     RM+    LL+EM+++G  
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYN LI     +   ++A+ +  +M   G +P I T++ ++  Y + G  E    +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + EM+ +G  PD  +YT LI G      + EA++  +EM E G+   V   +     L +
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520

Query: 586 AGR 588
            GR
Sbjct: 521 DGR 523



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 30/350 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+MM    +    +  + +  EM   GLL ++ TF I ++      E   A
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
                 M  +     +   NCL++   ++    EA  L  ++ KH   P++ TY++L+ G
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C V  + EA  +  EM  KGF P+ V +N +++G  K G    AI++   M  KG  PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +++ +I  +CK                 +M+    L  EM  +G  PD + Y ALI  
Sbjct: 438 IITFSTLIDGYCKAG---------------KMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW----------- 526
                   EA R++KEM  +G  P + T + ++    + G      K++           
Sbjct: 483 HFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542

Query: 527 --DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
             +E+ R  C P+   YT LI GL +  R  +A K+  +M   G++  V 
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVF 592



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 33/392 (8%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           AFR F    +K  F      Y  ++  L    +     SM   M   G+L ++ T+   M
Sbjct: 212 AFRLFDEMIEKKIFP-TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMM 270

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFT 345
           + +      KKA+ ++  M        V T   L++ L ++ ++    + L D       
Sbjct: 271 DGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV 330

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+  Y  L+ G+C+  NL EA  + +E+      PDV  ++I+++GL  + +  +A  L
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + MK KG  PN  +Y  +I  +CK+            GN   M+   ++  +M E+G  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKE------------GN---MEKAIEVCSQMTEKGIE 435

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P+ +T++ LI    K  KM + A+ +Y EMV  G  P +  Y  ++  +F+ GN +   +
Sbjct: 436 PNIITFSTLIDGYCKAGKM-EAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL------------EEMLEKGMKAP 572
           +  EM   G  P+  + + LI GL    R  +A K                 L++ + +P
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSP 554

Query: 573 -VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + Y      L   GR +   +    MR SG
Sbjct: 555 NHVMYTALIQGLCTDGRIFKASKFFSDMRCSG 586



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 141/310 (45%), Gaps = 4/310 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N   YN ++    +A      +S+  E+ +  +L  + T+ I +         ++A
Sbjct: 328 GVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + + M K  F     T N L++   +   + K  ++     +    PN+ T++ L+ G
Sbjct: 388 DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   +  A  ++ EM+ KG  PDVVA+  +++G  K G   +A +L + M+  G  PN
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V + + +I   CK      +  I  F  +   D       E++   C P+ + Y ALI+ 
Sbjct: 508 VFTLSCLIDGLCKDGR--ISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       +A + + +M  SG +P + T  +I++ +F+  +      +  ++++ G  P+
Sbjct: 566 LCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPN 625

Query: 538 DNSYTVLIGG 547
            + Y VL  G
Sbjct: 626 SSVYRVLAKG 635



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 159/400 (39%), Gaps = 43/400 (10%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A   F     +   A N + Y++++ +L  A+ +     ++ ++              + 
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDL--------------IQ 98

Query: 288 AFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344
               ++  +   ++F ++++    KF   V     L+       L +EA  ++ K+    
Sbjct: 99  CLQKSRRSRICCSVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMD--V 154

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P +    ++L G  +        +V+ +M+ +G  P+VV +  +++G  + G    A +
Sbjct: 155 LPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           LF+ M  K   P V  YTI+I   C +                    N   Y  ++ G+ 
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC 274

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               +    +L  EM   G  P+ +T+  LI  L K  +M   A +   +M   G  P I
Sbjct: 275 KIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMV-SARKFLIDMASFGVVPNI 333

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             YN ++  Y + GN      +  E+ +    PD  +Y++LI GL   DR  EA   L+E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M +KG     + YN       + G      E+  +M   G
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKG 433



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 37/281 (13%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GF  N+ TYN+++    +    E  + +  +M EKG+  ++ TF   ++ +  A + +
Sbjct: 396 KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A+ ++  M           I  LL                        P++  YT L+ 
Sbjct: 456 AAMGLYTEM----------VIKGLL------------------------PDVVAYTALID 481

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G  +  N  EA R+  EM + G  P+V   + +++GL K G+ SDAIKLF  +   G   
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDT 539

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                  +    C  N  +YT LI G     R+        +M   G  PD  T   +I+
Sbjct: 540 TGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQ 599

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
                    + + +  ++++ G  P    Y ++ K Y ++G
Sbjct: 600 GHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESG 640


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 165/327 (50%), Gaps = 22/327 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  + +YNS++  L      +    +  EM   G    E T+ + ++A   +   ++ 
Sbjct: 761  GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEM 820

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            + + + M++  +++   T N ++  L +SK L +   L ++ +   F+P   TY  LL G
Sbjct: 821  LKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDG 880

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +   +++A  ++NEM++ G +P+   +NI+L G    G   +  +LFE M  +G +P+
Sbjct: 881  LLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPD 940

Query: 418  VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYTI+I   C                    + +  VY  LI G G   R++    L  
Sbjct: 941  IKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFN 1000

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            EM+++G  P+  TYN+LI  +       EA ++Y+E++R G+KP++ TYN +++ Y  +G
Sbjct: 1001 EMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSG 1060

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            + +     + +MI  GC P+ ++Y  L
Sbjct: 1061 STDNAYAAYGQMIVGGCQPNSSTYMQL 1087



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 161/363 (44%), Gaps = 17/363 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + + RTY+ +M   G+ R  +T++ +L EM  +G+  ++ ++ I +     A    +A
Sbjct: 201 GISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEA 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M     K  V T   +++ L  +    +A+ +F K+K     P+  TY  LL  
Sbjct: 261 YHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDK 320

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
                +      VWN M+  G+  ++V++  +++ L ++G+  +A+ +F+ MK KG SP 
Sbjct: 321 CGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPE 380

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             SY                 LI+GF      D   +L   M   G  P+G T+   I  
Sbjct: 381 QYSYN---------------SLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINY 425

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   +A++ Y+ M   G  P +   N ++ S   +G   M ++V+ E+   G  PD
Sbjct: 426 YGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPD 485

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT++I       ++ EA  +  +M+E G    VL  N     L + G+     +L  
Sbjct: 486 TITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFH 545

Query: 598 KMR 600
           K++
Sbjct: 546 KLK 548



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 22/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y   + +LG+A +F+    +L +M + G    + T  + +     A     A
Sbjct: 236 GVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDA 295

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            A+F  M     K    T   LL+  G S   +    +++ +    +  N+ +YT ++  
Sbjct: 296 KAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDA 355

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V  + EA  V++EM +KG  P+  ++N ++ G LK      A++LF  M A GPSPN
Sbjct: 356 LCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPN 415

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++ + I  + K                     + A    ++       R+ +   +  
Sbjct: 416 GYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFY 475

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E++  G  PD +TY  +IK        DEA+  + +MV SG  P +   N ++ + ++ G
Sbjct: 476 ELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGG 535

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                 +++ ++      P + +Y  L+ GL  + +  E  + LEEM        ++ YN
Sbjct: 536 KGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYN 595

Query: 578 KFAADLSRAGR 588
                LS+ G 
Sbjct: 596 TVLDCLSKNGE 606



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 165/379 (43%), Gaps = 22/379 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++S LGR  + + ++ +LEEM       ++ T+   ++  +   E   A+ +   M
Sbjct: 558 TYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSM 617

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
            +      + + N ++  L + +  +EA  +F ++K    P+  T   +L  + +   + 
Sbjct: 618 TEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMK 677

Query: 366 EAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           EA     E I K G   D  + + ++EG+LK      +I+  E + ++G   N      +
Sbjct: 678 EALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPL 737

Query: 425 IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK   A+                    Y  LI G  +   +DI  DL  EM+  GC
Sbjct: 738 IRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGC 797

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN ++  M      +E +++ KEM R G++ T  TYN I+    ++   E    
Sbjct: 798 GPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAID 857

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  ++  G  P   +Y  L+ GL+   +  +A     EMLE G +     YN       
Sbjct: 858 LYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHR 917

Query: 585 RAGRSYVLDELAQKMRFSG 603
            AG +  + +L +KM   G
Sbjct: 918 IAGNTENVCQLFEKMVEQG 936



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 25/352 (7%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
            K G   +  +++S+M  + +    E  +   E +  +G+L  + F   +       + KK
Sbjct: 689  KAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPL--IRHLCKHKK 746

Query: 298  AVAIFELMNKYK-----FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTY 351
            A+   +L NK+K      K G  + N L+  L    L   A+ LF ++K     P+  TY
Sbjct: 747  ALEAHQLFNKFKGLGVSLKTG--SYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTY 804

Query: 352  TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
             ++L    +   + E  +V  EM  KG++   V +N ++ GL+K  +   AI L+  + +
Sbjct: 805  NLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMS 864

Query: 412  KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            +G SP                   Y  L+ G     +M    +L  EM E GC P+   Y
Sbjct: 865  EGFSPT---------------PCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIY 909

Query: 472  NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            N L+   +I    +   +++++MV  G  P I +Y +++ +    G    G   + ++  
Sbjct: 910  NILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHE 969

Query: 532  RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
             G  PD   Y +LI GL   +R  EA     EM +KG+   +  YN     L
Sbjct: 970  LGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHL 1021



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 127/290 (43%), Gaps = 22/290 (7%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +F+LM K   K  V T   +   +G     + A +    ++    + N  TY  L+    
Sbjct: 123 VFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLV 182

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKAKGPSP 416
           +     EA  V+  M++ G  P V  +++++   +  GK+ D    + L   M+A+G  P
Sbjct: 183 KSGFDAEAMEVYKAMVEDGISPSVRTYSVLM---VAFGKKRDVDTVLWLLNEMEARGVKP 239

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           NV SYTI I                  G   R D  Y +L +ME+ GC PD +T+  +I+
Sbjct: 240 NVYSYTICIRVL---------------GQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQ 284

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           ++       +A  ++ +M  S  KP   TY  ++     +G+ +   +VW+ M+  G   
Sbjct: 285 VLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYND 344

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +  SYT ++  L    R  EA    +EM EKGM      YN   +   +A
Sbjct: 345 NIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKA 394



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 18/276 (6%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +L+ +G+S +  E  L   K  HR  +     TY  ++ G  + K L +A  ++  
Sbjct: 803  TYNLILDAMGKS-MRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 861

Query: 374  MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
            ++ +GF P    +  +L+GLLK GK  DA  LF  M   G               C+ N 
Sbjct: 862  LMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYG---------------CEPNC 906

Query: 434  AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             +Y  L+ G       + V  L ++M E+G  PD  +Y  LI  +      ++ +  +++
Sbjct: 907  TIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQ 966

Query: 494  MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
            +   G +P +  YN+++    ++   E    +++EM ++G  P+  +Y  LI  L    +
Sbjct: 967  LHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGK 1026

Query: 554  SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            + EA +  EE+L KG K  V  YN      S +G +
Sbjct: 1027 AAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGST 1062



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 177/407 (43%), Gaps = 62/407 (15%)

Query: 209 LSHNLVVDVL-ERFRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVS 266
           ++H +++ VL +  R +   A  +   A D KP    +  TY +++   G +   +++V 
Sbjct: 277 VTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKP----DRVTYITLLDKCGDSGDSQSVVE 332

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +   M   G   ++ ++   ++A        +A+A+F+ M +        + N L+    
Sbjct: 333 VWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFL 392

Query: 326 RSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           ++ +   A  LF+ +     +PN  T+ + +  + +    ++A + +  M  KG  PDV 
Sbjct: 393 KADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVA 452

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           A N +L  L   G+   A ++F  +KA G SP+  +YT+MI K C + +           
Sbjct: 453 AANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMI-KCCSKAS----------- 500

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALI-------------------KLMKIQKM-- 483
              + D   +   +M E GC PD L  N+LI                   K MKI+    
Sbjct: 501 ---KADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNG 557

Query: 484 --------------PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
                           E +++ +EM R+ + P + TYN ++    + G       +   M
Sbjct: 558 TYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSM 617

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             +GC PD +SY  ++ GLI ++R  EA++   +M  K + AP  DY
Sbjct: 618 TEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM--KKILAP--DY 660



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 1/185 (0%)

Query: 405 LFEVMKAKGPSPNV-RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           + E+M+A G   ++ + + +M  +  K N   +  +  G G    +      L  M E G
Sbjct: 107 MLELMRAHGRVGDMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAG 166

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              +  TYN LI  +       EA+ +YK MV  G  P++ TY+++M ++ +  + +   
Sbjct: 167 MSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVL 226

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            + +EM  RG  P+  SYT+ I  L    R  EAY  L +M + G K  V+ +      L
Sbjct: 227 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVL 286

Query: 584 SRAGR 588
             AGR
Sbjct: 287 CDAGR 291



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 133/325 (40%), Gaps = 18/325 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+ + +   + A +  +A+  F  M +      V  +N L++ L +     EA  LF KL
Sbjct: 488 TYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKL 547

Query: 341 KH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           K  +  P   TY  LL G  R   + E  ++  EM    + P+++ +N +L+ L K G+ 
Sbjct: 548 KEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEV 607

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           + AI +   M  KG               C  + + Y  ++ G     R++  + +  +M
Sbjct: 608 NCAIDMLYSMTEKG---------------CAPDLSSYNTVMYGLIKEERLEEAFRMFCQM 652

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE-MVRSGFKPTIHTYNMIMKSYFQTGN 518
            ++   PD  T   ++       +  EA+   KE ++++G      +++ +M+   +   
Sbjct: 653 -KKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAG 711

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E   +  + +  RG   +D     LI  L    ++ EA++   +    G+      YN 
Sbjct: 712 VEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNS 771

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
               L       + ++L  +M+  G
Sbjct: 772 LIRGLVDENLIDIAEDLFTEMKRLG 796


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 25/398 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   N  TYN ++ +L +  +      +L EM  +G+      +   ++ F        A
Sbjct: 218 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 277

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             +F+ M K K      T   ++  L ++    EA  LF ++   R  P+  TYT L+ G
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 337

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + EA  + N+M+  G  P++V +  + +GL K G+   A +L   M  KG   N
Sbjct: 338 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 397

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  ++   CK                     +A  YT L+  +   R M   ++LL+
Sbjct: 398 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 457

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M +R   P  +T+N L+    +  M ++  ++ K M+  G  P   TYN ++K Y    
Sbjct: 458 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 517

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N     +++  M  +G  PD N+Y +LI G        EA+    +M+ KG    V  YN
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 577

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF---EVSNVLA 612
                  +  +     EL ++MR  G     E+ N+ A
Sbjct: 578 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFA 615



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 15/235 (6%)

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           ++  EM  KG KP+   +N ++  L K GK ++A ++   M ++G +P            
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAP------------ 256

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              +  +YT LI GF     +   Y L  EM++R   PD +TY A+I  +       EA 
Sbjct: 257 ---DGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 313

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +++ EMV    +P   TY  ++  Y + G  +    + ++M++ G  P+  +YT L  GL
Sbjct: 314 KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL 373

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                   A + L EM  KG++  +  YN     L +AG      +L + M  +G
Sbjct: 374 CKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 428



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V  L++EM+ +G  P+  TYN +I L+       EA R+ +EM+  G  P    Y  ++ 
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + + GN     +++DEM +R   PD  +YT +I GL    R  EA K   EM+ K ++ 
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326

Query: 572 PVLDYNKFAADLSRAGR 588
             + Y        + G+
Sbjct: 327 DEVTYTALIDGYCKEGK 343



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%)

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +KI    +  +++ +EM   G KP  +TYN ++    +TG      +V  EMI  G  PD
Sbjct: 198 IKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPD 257

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
              YT LI G         AY+  +EM ++ +    + Y      L + GR    D+L  
Sbjct: 258 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 317

Query: 598 KM 599
           +M
Sbjct: 318 EM 319


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 175/371 (47%), Gaps = 27/371 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++  YN ++++L    + + + S+  EMG +G+   + TF   M A   A + + A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-----TPNLTTYTV 353
           V + E M+         T   L++         EA L   ++K R      +    T  V
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEG-SIEAAL---RVKARMLEMGCSATKVTVNV 256

Query: 354 LLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           L+ G+C++  + +A G +  E+ D GF+PD + +N  + GL +      A+K+ +VM  +
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+V +Y I++   CK                 +++    +L +M +RGC PD  T+N
Sbjct: 316 GHDPDVFTYNIVVNCLCKNG---------------QLEEAKGILNQMVDRGCLPDITTFN 360

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +      +EA+ + +++   G  P ++T+N+++ +  + G+  +  ++++EM   
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           GC PD+ +Y  LI  L S  + G+A   L++M   G     + YN     L +  R    
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 593 DELAQKMRFSG 603
           +E+  +M   G
Sbjct: 481 EEVFDQMDLQG 491



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 23/337 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N          A+ + ++M +      V T N ++  L ++   +EA+ + +++
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R   P++TT+  L+   C    L EA  +  ++  KG  PDV   NI++  L K+G  
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A++LFE MK  G +P+  +Y  +I   C                     ++   Y  +
Sbjct: 408 HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G   + R++   ++  +M+ +G   + +T+N LI  +   K  D+A  +  +M+  G 
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGL 527

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P   TYN I+  Y + G+ +    + + M   G   D  +Y  LI GL    R+  A K
Sbjct: 528 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 587

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
            L  M  KGM+     YN     L R  R+ + D L+
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFR--RNNIRDALS 622



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 161/370 (43%), Gaps = 22/370 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+ ++ L +       + +++ M ++G    + T+ I +N      + ++A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M        + T N L+  L      +EA  L  ++  +  +P++ T+ +L+  
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V +   A R++ EM + G  PD V +N +++ L  +GK   A+ L + M++ G   +
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK+                    NA  +  LI G    +++D  + L+ 
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLIN 520

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  P+ +TYN+++     Q    +A  I + M  +GF+  + TY  ++    + G
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 580

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             ++  KV   M  +G  P   +Y  ++  L  ++   +A     EM E G     L Y 
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 640

Query: 578 KFAADLSRAG 587
                L R G
Sbjct: 641 IVFRGLCRGG 650



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 154/346 (44%), Gaps = 27/346 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N++++ L    + E  + +  ++  KG+   + TF I +NA     +   A+ +FE M
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                     T N L++NL    KL K   LL D        +  TY  ++ G C+   +
Sbjct: 418 KNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V+++M  +G   + +  N +++GL K  K  DA  L   M ++G  PN  +Y  +
Sbjct: 478 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSI 537

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +  +CKQ                    +   Y  LI G     R  +   +L+ M  +G 
Sbjct: 538 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 597

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P    YN +++ +  +    +A+ +++EM   G  P   TY ++ +   + G     ++
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI--KE 655

Query: 525 VWD---EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +D   EM+ +G  P+ +S+ +L  GL++        + +E ++EK
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYNS+++   +    +    +LE M   G  + + T+   +N    A   + A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           + +   M     +      N +L++L R    ++A  LF ++      P+  TY ++  G
Sbjct: 586 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645

Query: 358 WCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            CR    + EA     EM+DKGF P+  +  ++ EGLL +G     I+  E++  K
Sbjct: 646 LCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 49/254 (19%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           D  G + N+ T+N+++  L + ++ +    ++ +M  +GL     T+   +  +    + 
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           KKA  I E M    F+  V                                   TY  L+
Sbjct: 548 KKAADILETMTANGFEVDV----------------------------------VTYGTLI 573

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+      A +V   M  KG +P   A+N +L+ L +     DA+ LF  M   G  
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEP 633

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  +Y I+    C+    +                 +D + EM ++G  P+  ++  L 
Sbjct: 634 PDALTYKIVFRGLCRGGGPIKEA--------------FDFMLEMVDKGFIPEFSSFRMLA 679

Query: 476 KLMKIQKMPDEAVR 489
           + +    M D  +R
Sbjct: 680 EGLLNLGMDDYFIR 693


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKE 294
           G KP       TY ++++ L R + F++++ ++ ++ E G+      F   +NAF+ +  
Sbjct: 43  GHKPTLI----TYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGN 98

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
            K+A+ +F  M +   K    T N L++  G +   +EA  L + L+     PN  TY +
Sbjct: 99  MKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNI 158

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+  WC  +N+ EA  +  +M+  G +PD V +N +     + G+   A ++   M  + 
Sbjct: 159 LVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRR 218

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            +PN R+ +I++  +CK+                    N  V+  LI GF +    + V 
Sbjct: 219 VTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVD 278

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           ++L  MEE G  PD +T++ ++         D+   I+ +MV++  +P IH ++++ K Y
Sbjct: 279 EVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGY 338

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  E    +   M + G  P+    T +I G  S  +   A K  E+M E G+   +
Sbjct: 339 VRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNL 398

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
             Y         A +    +EL Q M   G F
Sbjct: 399 KTYETLIWGYGEAKQPLKAEELLQVMEEKGVF 430



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 131/281 (46%), Gaps = 17/281 (6%)

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +G+ K P+EA  +F+ L      P L TYT L+    R K      R+ +++ + G KPD
Sbjct: 24  IGKGK-PREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPD 82

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
            +  N ++    + G   +A+KLF  MK  G               CK   + +  LI G
Sbjct: 83  SILFNSIINAFSESGNMKEAMKLFRKMKESG---------------CKPTTSTFNTLIKG 127

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           +GN  + +    LL+ +++ G  P+  TYN L++    ++  +EA  +  +MV SG +P 
Sbjct: 128 YGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPD 187

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN + ++Y + G      ++  EM+ R   P++ + ++++ G   +    +A +++ 
Sbjct: 188 AVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVF 247

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            M E G+   +  +N           +  +DE+   M  +G
Sbjct: 248 RMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENG 288



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 15/207 (7%)

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L+  GK  +A  +F  +  +G  P + +YT ++    +Q               +    +
Sbjct: 23  LIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQ---------------KLFKSI 67

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L+ ++EE G  PD + +N++I          EA++++++M  SG KPT  T+N ++K 
Sbjct: 68  LRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKG 127

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y   G  E   K+ + +   G  P+  +Y +L+    +++   EA+  + +M+  GM+  
Sbjct: 128 YGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPD 187

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKM 599
            + YN  A   +  G +   +E+  +M
Sbjct: 188 AVTYNTLARAYAEKGETIRAEEMILEM 214



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   +NS++         E +  +L  M E G+   + TF   MNA+++A    K 
Sbjct: 253 GVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKC 312

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             IF  M K + +  +   + L +   R+  P++A+ +   + K+   PN+   T ++ G
Sbjct: 313 KEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISG 372

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           WC    +  A +V+ +M + G  P++  +  ++ G  +  +   A +L +VM+ KG  P
Sbjct: 373 WCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFP 431



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/346 (19%), Positives = 139/346 (40%), Gaps = 61/346 (17%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           FR    +G KP     + T+N+++   G A + E  + +LE + + G+  +  T+ I + 
Sbjct: 106 FRKMKESGCKP----TTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVR 161

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTP 346
           A+   +  ++A  +   M     +    T N L      + +  +  +++ + L  R TP
Sbjct: 162 AWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTP 221

Query: 347 NLTTYTVLLGGWCRVKNLMEAGR---------------VWNEMI---------------- 375
           N  T ++++ G+C+  N+++A R               V+N +I                
Sbjct: 222 NERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVL 281

Query: 376 ----DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
               + G +PDVV  + ++      G+     ++F  M      P++ +++I+   + + 
Sbjct: 282 TLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRA 341

Query: 432 --------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                               N  + T +I+G+ +  +M+    + ++M E G  P+  TY
Sbjct: 342 GEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTY 401

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
             LI      K P +A  + + M   G  P   T  +I  ++   G
Sbjct: 402 ETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIG 447


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 204/449 (45%), Gaps = 26/449 (5%)

Query: 161 NNSESEITSVSYK-STADP--REI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVD 216
           N+ ESE     +K S  DP  R + ER  +++ ++F    + E  L+   + + H LV  
Sbjct: 40  NHEESEKPQEKWKLSRKDPSVRMLDERFIRIV-KIFKWGPDAEKALEVLKLKVDHRLVRS 98

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           +LE          +FF WAG +  F H+  TY +++  L  AR +  M   ++E+     
Sbjct: 99  ILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY 157

Query: 277 LSMETFKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
           +S+    ++  + A   AK   KA+++F      K K    T N ++  L +    ++  
Sbjct: 158 VSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVH 217

Query: 335 LLFDKLKHRFT--PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
            ++ ++ +     P+  TY+ L+  + ++     A R+++EM D   +P    +  +L  
Sbjct: 218 EVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGI 277

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
             K+GK   A+ LFE MK  G SP V  YT             YT LI G G   R+D  
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTV--YT-------------YTELIKGLGKAGRVDEA 322

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           Y   K+M   G  PD +  N L+ ++      +E   ++ EM      PT+ +YN ++K+
Sbjct: 323 YGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKA 382

Query: 513 YFQTGNYEMGRKVW-DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            F++  +      W D+M      P + +Y++LI G    +R  +A   LEEM EKG   
Sbjct: 383 LFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
               Y      L +A R    DEL ++++
Sbjct: 443 CPAAYCSLINALGKAKRYEAADELFKELK 471



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 156/343 (45%), Gaps = 18/343 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAKERK 296
           + G +    TY  ++  LG+A + +      ++M   GL     F    MN        +
Sbjct: 296 RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKL-PKEAQLLFDKLK-HRFTPNLTTYTVL 354
           +   +F  M  ++    V + N +++ L  SK    E    FDK+K    +P+  TY++L
Sbjct: 356 ELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSIL 415

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+   + +A  +  EM +KGF P   A+  ++  L K  +   A +LF+ +K    
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKEN-- 473

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                        F   ++ VY  +I  FG   ++    DL  EM+ +G  PD   YNAL
Sbjct: 474 -------------FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  M    M +EA  + ++M  +G +  I+++N+I+  + +TG      ++++ +   G 
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            PD  +Y  L+G         EA + + EM +KG +   + Y+
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYS 623



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 168/383 (43%), Gaps = 24/383 (6%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIF 302
           S TYNS++ +L +  Q E +  +  EM  +G       T+   ++++        A+ +F
Sbjct: 197 SSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLF 256

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M     +        LL    +    ++A  LF+++K    +P + TYT L+ G  + 
Sbjct: 257 DEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKA 316

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA   + +M+  G  PDVV  N ++  L K+G+  +   +F  M     +P V SY
Sbjct: 317 GRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSY 376

Query: 422 TIMIWKFCKQNAAV---------------------YTCLITGFGNRRRMDIVYDLLKEME 460
             +I    +  A V                     Y+ LI G+    R++    LL+EM+
Sbjct: 377 NTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMD 436

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           E+G PP    Y +LI  +   K  + A  ++KE+  +    +   Y +++K + + G   
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +++EM  +G  PD  +Y  L+ G++      EA   L +M E G +A +  +N   
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
              +R G      E+ + ++ SG
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSG 579



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 162/377 (42%), Gaps = 26/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TY++++S   +  + ++ + + +EM +  +   E  +   +  +    + +KA+ +FE M
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +      V T   L++ LG++    EA   + D L+   TP++     L+    +V  +
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTI 423
            E   V++EM      P VV++N +++ L +     S+    F+ MKA   SP+  +Y+I
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSI 414

Query: 424 MIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  +CK N                     A Y  LI   G  +R +   +L KE++E  
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENF 474

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
                  Y  +IK         EAV ++ EM   G  P ++ YN +M    + G      
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEAN 534

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M   GC  D NS+ +++ G         A +  E +   G+K   + YN      
Sbjct: 535 SLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594

Query: 584 SRAGRSYVLDELAQKMR 600
           + AG   + +E A+ MR
Sbjct: 595 AHAG---MFEEAARMMR 608



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 2/165 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           +SR Y  M+   G+  +    V +  EM  +G    +  +   M+    A    +A ++ 
Sbjct: 478 SSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLL 537

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M +   +A +++ N +L    R+ +P+ A  +F+ +KH    P+  TY  LLG +   
Sbjct: 538 RKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHA 597

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
               EA R+  EM DKGF+ D + ++ +L+ +  +    D +  F
Sbjct: 598 GMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 169/363 (46%), Gaps = 17/363 (4%)

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAI 301
           H+  TY  +++   RA   +    +L EM EKG   S+ T+ + +     A E  +A  +
Sbjct: 234 HDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFEL 293

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
            +LM+K    A V T + L++  G+ K   EA+L+ +++  +   P    YT L+ G+ R
Sbjct: 294 KKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMR 353

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             +  EA RV  EM+ +G K ++  +N +++G+ K G    A  L   M   G  P+ ++
Sbjct: 354 QGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQT 413

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           Y  MI  + K+             N  R   V DLL EM++    P   T   +I  +  
Sbjct: 414 YNNMIEGYLKEQ------------NTSR---VKDLLSEMKKSNLVPTAYTCGMIINGLCR 458

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
               ++A R+++ MV  G KP    Y  ++K + Q G ++   ++   M ++G  PD   
Sbjct: 459 HGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLC 518

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y  +I GL    +  EA  YL EM+E+G+K  V  Y        ++G   V D   ++M 
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEML 578

Query: 601 FSG 603
             G
Sbjct: 579 GCG 581



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 174/391 (44%), Gaps = 24/391 (6%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-M 279
           FR       +   +  ++ G + +  TYN ++  L RA + +    + + M +KGL++ +
Sbjct: 247 FRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADV 306

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            T+ I ++ F   K   +A  + E M     K G      L++   R     EA  + ++
Sbjct: 307 FTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEE 366

Query: 340 LKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +  R    NL TY  L+ G C+  ++ +A  + NEMI  G KPD   +N M+EG LK   
Sbjct: 367 MLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQN 426

Query: 399 RSDAIKLFEVMKAKGPSPNV--------------------RSYTIMIWKFCKQNAAVYTC 438
            S    L   MK     P                      R + IM+    K NA +YT 
Sbjct: 427 TSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTT 486

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA-LIKLMKIQKMPDEAVRIYKEMVRS 497
           LI G     R      +LK M+++G  PD L YN+ +I L K +KM +EA     EM+  
Sbjct: 487 LIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKM-EEAKDYLVEMIER 545

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G KP ++TY  ++  Y ++G  ++  + + EM+  G  P+D   T LI G   +  + EA
Sbjct: 546 GLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEA 605

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
                 ML + +   V  Y+     L R G+
Sbjct: 606 TSIFRCMLGRSVHPDVRTYSALIHGLLRNGK 636



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 164/409 (40%), Gaps = 57/409 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-------------------- 276
           DK G   +  TY+ ++   G+ ++      MLEEM  KGL                    
Sbjct: 298 DKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDS 357

Query: 277 ----------------LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
                           L++ T+   +       + +KA A+   M     K    T N +
Sbjct: 358 GEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNM 417

Query: 321 LEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +E  L      +   LL +  K    P   T  +++ G CR  ++ +A RV+  M+  G 
Sbjct: 418 IEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGV 477

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
           KP+ V +  +++G ++ G+  +A+++ +VM  KG  P+V  Y  +I   CK         
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKD 537

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI G+     M +     KEM   G  P+ +   ALI    
Sbjct: 538 YLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYC 597

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
            +    EA  I++ M+     P + TY+ ++    + G  +   ++  E + +G  PD  
Sbjct: 598 KEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVF 657

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +Y  +I G   Q   G+A++  E M +KG+   ++ YN     L +AG 
Sbjct: 658 TYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGE 706



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 22/338 (6%)

Query: 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
           SI   +R FE MVS+    G K   +   +   +         ++AV I ++M+K   + 
Sbjct: 461 SIEDASRVFEIMVSL----GVKP--NAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQP 514

Query: 313 GVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
            V   N ++  L +S+  +EA+  L + ++    PN+ TY  L+ G+C+   +  A R +
Sbjct: 515 DVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYF 574

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
            EM+  G  P+ V    +++G  K G  ++A  +F  M  +   P+VR+Y+         
Sbjct: 575 KEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYS--------- 625

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
                  LI G     ++    +LL E  E+G  PD  TYN++I     Q    +A +++
Sbjct: 626 ------ALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLH 679

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           + M + G  P I TYN ++    + G  E  R+++D +  +G   +  +Y  +I G    
Sbjct: 680 EYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKS 739

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
               +A++  +EM  KG+      Y+       + G +
Sbjct: 740 GNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNT 777



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 168/370 (45%), Gaps = 33/370 (8%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           RTY++++  L R  + +  + +L E  EKGL+  + T+   ++ F       KA  + E 
Sbjct: 622 RTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEY 681

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M +      + T N L+  L ++   + A+ LFD +  +    N  TY  ++ G+C+  N
Sbjct: 682 MCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGN 741

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A R+++EM  KG  PD   ++ +++G  K G    A+ LF     KG + +  S   
Sbjct: 742 LSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFA-STSSLNA 800

Query: 424 MIWKFCKQNAAV--------------------YTCLI-----TGFGNRRRMDIVYDLLKE 458
           ++  FCK    +                    YT LI     TGF        V     +
Sbjct: 801 LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFV-----D 855

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M++R   P+ LTY AL+    +     E   ++ EM+    +P   T+++++ ++ + G+
Sbjct: 856 MQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGD 915

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           +    K+ D+M+++G     N   VLI  L  ++   E  K LE++ E+G+   +   + 
Sbjct: 916 HVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCST 975

Query: 579 FAADLSRAGR 588
                 +AG+
Sbjct: 976 LVRCFHKAGK 985



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 162/405 (40%), Gaps = 44/405 (10%)

Query: 187 VIDEL--FSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHN 244
           +++E+  F   +N E++L      LS ++V  V+ +  +  +    FF W   + GF+  
Sbjct: 41  IVNEITTFLNQKNWESLLPLVSNKLSPDVVHSVITKQVNDPKRLLDFFNWVQFQMGFSQK 100

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEM------GEKGLL-----SMETFKIAMNAFAAAK 293
            ++++ +  IL  +R F    S++ +M      G   +L     S + F +         
Sbjct: 101 LQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLIKSCKEFDLNNVNGNENS 160

Query: 294 ERKKAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
                  +FEL+ + YK K   D               +         ++ F   L    
Sbjct: 161 NNNDRGVVFELLIDGYKKKGLFD---------------EAVSFFLGAKRNGFVVGLLCCN 205

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            LL    +   L    R +N M++     DV  +  ++    + G   +  +L   M+ K
Sbjct: 206 GLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEK 265

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G SP++ +Y ++I   C+                  +D  ++L K M+++G   D  TY+
Sbjct: 266 GCSPSLVTYNVVIGGLCRAG---------------EVDEAFELKKLMDKKGLVADVFTYS 310

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI     QK   EA  + +EM   G KP    Y  ++  + + G+     +V +EM+ R
Sbjct: 311 ILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLAR 370

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           G   +  +Y  L+ G+       +A   L EM+  G+K     YN
Sbjct: 371 GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYN 415



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%)

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
           G+ +  LI   K + + DEAV  +    R+GF   +   N ++    +    E+  + ++
Sbjct: 166 GVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYN 225

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            M+      D  +YT LI        + E  + L EM EKG    ++ YN     L RAG
Sbjct: 226 GMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAG 285

Query: 588 RSYVLDELAQKMRFSG 603
                 EL + M   G
Sbjct: 286 EVDEAFELKKLMDKKG 301


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 138/275 (50%), Gaps = 20/275 (7%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           ++L  +L+    P++ TYT+L+   C    + +A ++ +EM  +G KPDVV +N+++ G+
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTI--------------------MIWKFCKQNA 433
            K G+  +AIK    M + G  PNV ++ I                    M+ K C  + 
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSV 121

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             +  LI     +  +    D+L++M   GC P+ L+YN L+     +K  D A++  + 
Sbjct: 122 VTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEI 181

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV  G  P I TYN ++ +  + G  +   ++ +++  +GC P   +Y  +I GL    +
Sbjct: 182 MVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGK 241

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           + +A + L EM  KG+K  V+ Y+   A LSR G+
Sbjct: 242 TDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGK 276



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 21/279 (7%)

Query: 332 EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +A  L D++  R   P++ TY VL+ G C+   L EA +  N M   G +P+V+ HNI+L
Sbjct: 34  QAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIIL 93

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------- 431
             +   G+  DA KL   M  KG SP+V ++ I+I   C++                   
Sbjct: 94  RSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCT 153

Query: 432 -NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            N+  Y  L+ GF   ++MD     L+ M  RGC PD +TYN ++  +      D AV +
Sbjct: 154 PNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVEL 213

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             ++   G  P + TYN ++    + G  +   ++  EM  +G  PD  +Y+ LI GL  
Sbjct: 214 LNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSR 273

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           + +  EA K+  ++   G+K     YN     L +A ++
Sbjct: 274 EGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQT 312



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 21/328 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDK 339
           T+ I + A  A     +A+ + + M     K  V T N L+  + +  +L +  + L   
Sbjct: 18  TYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSM 77

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             +   PN+ T+ ++L   C     M+A ++  EM+ KG  P VV  NI++  L + G  
Sbjct: 78  PSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLL 137

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             AI + E M   G +PN  SY  ++  FCK+                    +   Y  +
Sbjct: 138 GRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTM 197

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +T      ++D   +LL ++  +GC P  +TYN +I  +      D+AV +  EM   G 
Sbjct: 198 LTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGL 257

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP + TY+ ++    + G  E   K + ++   G  P+  +Y  ++ GL    ++  A  
Sbjct: 258 KPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAID 317

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +L  M+ KG K   + Y      ++  G
Sbjct: 318 FLAYMISKGCKPTEVSYTILIEGIANEG 345



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 141/328 (42%), Gaps = 22/328 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G   +  TYN +++ + +  + +  +  L  M   G   ++ T  I + +  +      A
Sbjct: 46  GCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDA 105

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             +   M +      V T N L+  L R  L   A  + +K+  H  TPN  +Y  LL G
Sbjct: 106 EKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHG 165

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K +  A +    M+ +G  PD+V +N ML  L K GK   A++L   + +KG SP 
Sbjct: 166 FCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPV 225

Query: 418 VRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I                     K  K +   Y+ LI G     +++       
Sbjct: 226 LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFH 285

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           ++E  G  P+  TYN+++  +   +  D A+     M+  G KPT  +Y ++++     G
Sbjct: 286 DVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
             +   ++ +E+  RG     ++  V++
Sbjct: 346 LAKEALELLNELCSRGVVKKSSAEQVVV 373



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 22/248 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G + +  T+N +++ L R       + +LE+M   G      ++   ++ F   K+  
Sbjct: 114 RKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMD 173

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+   E+M        + T N +L  L +      A  L ++L  +  +P L TY  ++
Sbjct: 174 RAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVI 233

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  +V    +A  + +EM  KG KPDV+ ++ ++ GL + GK  +AIK F  ++  G  
Sbjct: 234 DGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVK 293

Query: 416 PNVRSY--------------------TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
           PN  +Y                      MI K CK     YT LI G  N        +L
Sbjct: 294 PNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALEL 353

Query: 456 LKEMEERG 463
           L E+  RG
Sbjct: 354 LNELCSRG 361



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%)

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           ++L    E+ C PD +TY  LI+    +    +A+++  EM   G KP + TYN+++   
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  +   K  + M   G  P+  ++ +++  + S  R  +A K L EM+ KG    V
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSV 121

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + +N     L R G      ++ +KM   G
Sbjct: 122 VTFNILINFLCRKGLLGRAIDILEKMPTHG 151


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 168/377 (44%), Gaps = 24/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +YN++++ L +A++ +  V +L EM   G      T    M+         +A+ + E M
Sbjct: 35  SYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 94

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNL 364
            K  F A V     L+     +      + LFD+ L    + N+ TY+ L+ G CR+   
Sbjct: 95  KKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW 154

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V N M + G  PDVV +  +++GL K G+ + A+ L  +M  KG  P+  +Y ++
Sbjct: 155 KEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 214

Query: 425 IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEM--EER 462
           +   CK+   +                    Y  L+ G  ++ ++D    L   M   E 
Sbjct: 215 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 274

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
              P+  T+N LI  +  +    +AV+I+++MV+ G    + TYNM++    + G  +  
Sbjct: 275 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 334

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            ++W +++  G  P+  +Y++LI G         A     EM   G+   + DYN   A 
Sbjct: 335 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 394

Query: 583 LSRAGRSYVLDELAQKM 599
           L + G       L Q+M
Sbjct: 395 LCKEGSLEQAKSLFQEM 411



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 173/370 (46%), Gaps = 23/370 (6%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  TY  ++  L   GRA     +++++ E GE+   S  T+ + ++         
Sbjct: 168 GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEP--SNVTYNVLLSGLCKEGLVI 225

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFTPNLTTYTV 353
            A  I  +M +   KA V T N L++ L       EA  LF+ +   ++   PN+ T+ +
Sbjct: 226 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNM 285

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+GG C+   L +A ++  +M+ KG   ++V +N++L G LK GK  +A++L++ +   G
Sbjct: 286 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 345

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             PN  S+T             Y+ LI GF   R ++I   L  EM   G  P    YN 
Sbjct: 346 FVPN--SFT-------------YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNT 390

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+  +  +   ++A  +++EM  +  +P I ++N ++    + G+++  +++  +M+  G
Sbjct: 391 LMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMG 450

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             PD  +++ LI  L       EA   LE M+  G     L Y+     LS  G +  + 
Sbjct: 451 LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEII 510

Query: 594 ELAQKMRFSG 603
            L  +M   G
Sbjct: 511 NLLHQMAAKG 520



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           +N +L+ L R+    EA  L  ++  +  +P++ +Y  L+ G C+ K L EA  +  EM 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
             G  P+ V    +++GL K G+  +A++L E MK KG   +V                +
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADV---------------VL 105

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  LI+GF N   +D   +L  EM  +G   + +TY+ L+  +       EA  +   M 
Sbjct: 106 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 165

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + TY  ++    + G       + + M+ +G  P + +Y VL+ GL  +    
Sbjct: 166 EHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVI 225

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           +A+K L  M+EKG KA V+ YN     L   G+   +DE A K+ F+  F+  N L
Sbjct: 226 DAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK---VDE-ALKL-FNSMFDNENCL 276


>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
 gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 199/433 (45%), Gaps = 30/433 (6%)

Query: 197 NMEAVLDECG-INLSHNLVVDVLERFR-HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           N+E  L+    I L    V D++ R+  +  +   RFF WAGD+P + HN   YN   S+
Sbjct: 45  NVEKTLNSLAPIKLDTKYVNDIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSL 104

Query: 255 LGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
               +  + ++ ++E    EK ++ ++TFK+ +    A     +A+ + + M ++  +  
Sbjct: 105 FKIKQNPQVILDLIETYKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPD 164

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
               N ++ +L        A+ L  ++      P++ TY  ++ G+C V  L EA  ++ 
Sbjct: 165 TTAYNVVIRSLCEKGDVDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFP 224

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM--KAKGPSPNVRSYTIMIWKFCK 430
            M   G  P+VVA++ +L+G+ + G    A +L   M  + +G  PNV +YT +I  FC+
Sbjct: 225 VMSVHGCYPNVVAYSALLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCE 284

Query: 431 Q--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
           Q                    N    +  I G     ++  VY+ ++ +   G    G  
Sbjct: 285 QGRTKDALSVLELMEVRGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDC 344

Query: 471 YNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           Y++L+  L+KI+K+ +EA + ++  + SG KP     +M+++          G  +++E+
Sbjct: 345 YSSLVVCLIKIKKV-EEAEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEV 403

Query: 530 IRRGCCP--DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            + GC    D + Y++L+ GL  Q  S EA +    MLEK +        K    L   G
Sbjct: 404 EKTGCLSSIDIDIYSILLAGLCQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFG 463

Query: 588 RSYVLDELAQKMR 600
              ++ EL   +R
Sbjct: 464 GKELVAELVSMVR 476



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           + N  +Y    + F  ++   ++ DL++  +   C     T+  +++L K   + DEA+ 
Sbjct: 92  RHNLYIYNKACSLFKIKQNPQVILDLIETYKLEKCVVCVDTFKVVLRLCKAGGLADEALM 151

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           + K+M     +P    YN++++S  + G+ +M +K+  EM      PD  +Y  +I G  
Sbjct: 152 VLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMAKKLMGEMGLIDLYPDMITYVSMIKGFC 211

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
              R  EA+     M   G    V+ Y+     + R G      EL  +M   G+    N
Sbjct: 212 DVGRLEEAFALFPVMSVHGCYPNVVAYSALLDGICRFGIVERAFELLAEMEKQGEGCCPN 271

Query: 610 VL 611
           V+
Sbjct: 272 VI 273


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 154/324 (47%), Gaps = 22/324 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TY  ++   G + + + +  M EEM EKG+ + +  + + +N        K+A A+F+ +
Sbjct: 3   TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            +    A V T   L++ + ++   + A++L ++++ R    N   Y  L+ G+C+   +
Sbjct: 63  TEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLI 122

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA +V   M  KGF+ D+   N + +GL K+ +  +A +    M  KG  PNV SYT +
Sbjct: 123 DEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTL 182

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  +CK+                    NA  Y  LI G   + RM   Y+L  EM  +G 
Sbjct: 183 IDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGI 242

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TY +L+    I    D+AV ++ E+ + G    + TY  I+    + G  E   K
Sbjct: 243 FPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFK 302

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGL 548
           ++DEM   G  PDD  YT L+  L
Sbjct: 303 LYDEMTEAGLTPDDRVYTSLVSSL 326



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 146/289 (50%), Gaps = 18/289 (6%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKI 284
           + AF  F    +K G   N  TY +++  + +A + E    ++ EM  +GL ++   +  
Sbjct: 53  KRAFALFDELTEK-GLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNT 111

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHR 343
            ++ +       +A  +  +M K  F+  + T+N + + L +   P+EA+  L   ++  
Sbjct: 112 LIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKG 171

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             PN+ +YT L+  +C+  N +EA +++ EM   G +P+ V +N++++G  K G+  +A 
Sbjct: 172 VVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAY 231

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +L + M+AKG  P++ +YT ++   C             FG   ++D   +L  E+ ++G
Sbjct: 232 ELRDEMRAKGIFPDIYTYTSLLHGECI------------FG---KLDDAVELFNEVRQKG 276

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            P + +TY A+I  +  +   +EA ++Y EM  +G  P    Y  ++ S
Sbjct: 277 LPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSS 325



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 20/249 (8%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           + TYT+L+        + E  R++ EM +KG K D+  + +++    KIG    A  LF+
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRR 447
            +  KG   NV +Y  +I   CK                     N  +Y  LI G+  R 
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            +D  + +   ME++G   D  T N +   ++    P+EA R    M+  G  P + +Y 
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++  Y + GN+   +K++ EM + G  P+  +Y VLI G   + R  EAY+  +EM  K
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 568 GMKAPVLDY 576
           G+   +  Y
Sbjct: 241 GIFPDIYTY 249



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 151/311 (48%), Gaps = 21/311 (6%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V T   L++  G S    E + +F+++  +    ++  YTV++   C++ N   A  +++
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           E+ +KG   +V  +  +++G+ K G+   A  L   M+ +G   N   Y  +I  +CK+ 
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 432 --NAAVYTCLIT---GFGNR-RRMDIVYDLLKE-------------MEERGCPPDGLTYN 472
             + A    +I    GF N    ++ + D L++             M E+G  P+ ++Y 
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI +   +    EA ++++EM ++G +P   TYN+++  + + G  +   ++ DEM  +
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  PD  +YT L+ G     +  +A +   E+ +KG+   V+ Y    + LS+ GRS   
Sbjct: 241 GIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEA 300

Query: 593 DELAQKMRFSG 603
            +L  +M  +G
Sbjct: 301 FKLYDEMTEAG 311


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 190/419 (45%), Gaps = 28/419 (6%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK-PGFAHNSRTYNSMMSI 254
           R +   L +  I+ +  LV   L+R  +    A  FF       P + H+  +++  + I
Sbjct: 51  RTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDI 110

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
             R R F +  +++  M    L  S +T  I    +A+  +  +AV  F  M+++     
Sbjct: 111 AARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQD 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           + + N LL+ L +S   + A  L   LK RF P+  +Y +L  G+C  K    A RV  E
Sbjct: 171 LHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKE 230

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----- 428
           M+ +G +P +V +N ML+G  +  +  +A + +  MK +    +V SYT +I  F     
Sbjct: 231 MVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGE 290

Query: 429 ---------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYN 472
                             N A Y  LI  F  +  +     + +EM   G C P+ +T+N
Sbjct: 291 VKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFN 350

Query: 473 ALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
            +I+ L  +  M + A+   + M   G + ++ TYN++++ +   G  E G +V+ +M  
Sbjct: 351 VVIRGLCHVGDM-ERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGD 409

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGE---AYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             C P+ ++Y VLI  +  + +S +   A K L EM+E+G       +N+    L   G
Sbjct: 410 GLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITG 468



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS--METFKIAMNAFAAAKER 295
           K G A N  TYN+++ +  +    +  V++ EEM  +G+ S  + TF + +       + 
Sbjct: 303 KEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDM 362

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVL 354
           ++A+   E M ++  +A V T N ++     +   ++   +F K+      PNL TY VL
Sbjct: 363 ERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVL 422

Query: 355 LGG-WCRVK--NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           +   + R K  +L+ AG++  EM+++GF P     N +L GL+  G +  A
Sbjct: 423 ISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFA 473


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 23/389 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G   N  TYNS++  L +AR  +    +L +M +  +   E T+   ++ ++     K
Sbjct: 300 QKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWK 359

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A  +F+ M +      + T N L+++L + K  KEA  +F  +  +   P++ +Y++LL
Sbjct: 360 EAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILL 419

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+      ++   +++ M D G   D    NI++    K G   +A+ +F  M+ +G S
Sbjct: 420 HGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVS 479

Query: 416 PNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y  +I   C                    K N  VY  LI GF     +    +L
Sbjct: 480 PNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKEL 539

Query: 456 LKEMEERGCP-PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           + EM ++G P P+   ++++I  +  +     A  ++  ++  G +P I T+N ++  Y 
Sbjct: 540 VSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYC 599

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
             G  +    V D M+  G  PD  +Y+ LI G     R  +      EML K +K   +
Sbjct: 600 LVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTV 659

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y+     L RAGR+    ++  +M  SG
Sbjct: 660 TYSLVLDGLFRAGRTSAAKKMFHEMIESG 688



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 168/389 (43%), Gaps = 23/389 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   +  T+NS+M  L + ++ +    +   +  KG    + ++ I ++ +A      
Sbjct: 370 REGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFV 429

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
               +F  M      A     N L+    +  +  EA L+F +++ +  +PN+ TY  ++
Sbjct: 430 DMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVI 489

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG-P 414
              CR+  L +A    ++MI  G KP+ V ++ +++G    G    A +L   M  +G P
Sbjct: 490 AALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIP 549

Query: 415 SPNVRSYTIMIWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYD 454
            PN+  ++ +I   C +   +                    +  LI G+    +MD  + 
Sbjct: 550 RPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFG 609

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L  M   G  PD +TY+ LI         D+ + +++EM+    KPT  TY++++   F
Sbjct: 610 VLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLF 669

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G     +K++ EMI  G     ++YT+++ GL   + + EA     ++    +K  + 
Sbjct: 670 RAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIA 729

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             N     L +  R     +L   +  SG
Sbjct: 730 ILNTMIHALYKVKRREEAHDLFASVSASG 758



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 160/394 (40%), Gaps = 43/394 (10%)

Query: 244 NSRTYNSMMSILGRARQF-------ETMVSML-----EEMGEKGL-LSMETFKIAMNAFA 290
           + R  N  ++ L RAR            V++      EE G + + L++ T+ I M+   
Sbjct: 117 HGRALNGFLAALARARDSVACSDAPALAVALFNRICREEAGPRVVPLTVHTYGILMDCCC 176

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT----- 345
            A+      A F  + +   +      N  L+ L  +K   EA      L HR +     
Sbjct: 177 RARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEA---LSMLLHRMSELGCV 233

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-KGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           P+  +Y  ++   C      EA  +   M    G  PDVV++ +++ GL   G+ S A  
Sbjct: 234 PDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACN 293

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNA--------------------AVYTCLITGFG 444
           LF  M  KG  PNV +Y  ++   CK  A                      YT +I G+ 
Sbjct: 294 LFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYS 353

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              R      + KEM   G  PD +T+N+L+  +   K   EA  I+  +   G KP I 
Sbjct: 354 CLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDII 413

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           +Y++++  Y   G +     ++  M   G   D + + +LI     +    EA     EM
Sbjct: 414 SYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEM 473

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQ 597
             +G+   V+ Y    A L R GR +  +++L+Q
Sbjct: 474 RGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 141/339 (41%), Gaps = 36/339 (10%)

Query: 285 AMNAFAAAKERKK-----------AVAIF-----ELMNKYKFKAGVDTINCLLENLGRSK 328
           A+N F AA  R +           AVA+F     E          V T   L++   R++
Sbjct: 120 ALNGFLAALARARDSVACSDAPALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRAR 179

Query: 329 LPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVA 385
            P      F +L      T  + T T  L   C  K   EA   + + M + G  PD  +
Sbjct: 180 RPDLGPAFFARLLRAGLRTDGIVTNT-FLKCLCYAKRTDEALSMLLHRMSELGCVPDAFS 238

Query: 386 HNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           +N +++ L    +  +A+  L  + K  G SP+V SYT++I     +      C      
Sbjct: 239 YNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKAC------ 292

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                    +L  EM ++G  P+ +TYN+++  +   +  D+A  + ++M  +  +P   
Sbjct: 293 ---------NLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEV 343

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY  ++  Y   G ++   K++ EM R G  PD  ++  L+  L    RS EA +    +
Sbjct: 344 TYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSI 403

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             KG K  ++ Y+      +  GR   ++ L   M  +G
Sbjct: 404 ATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNG 442



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 142/336 (42%), Gaps = 19/336 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + N  TY ++++ L R  +    +  L +M   GL  +   +   +  F    +  KA
Sbjct: 477 GVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKA 536

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLG 356
             +  E+M++   +  +   + ++ +L        AQ +F+ + H    P++ T+  L+ 
Sbjct: 537 KELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLID 596

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C V  + +A  V + M+  G +PDVV ++ ++ G  K G+  D + LF  M  K   P
Sbjct: 597 GYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKP 656

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
              +Y++               ++ G     R      +  EM E G      TY  +++
Sbjct: 657 TTVTYSL---------------VLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQ 701

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +      DEA+ ++ ++     K  I   N ++ + ++    E    ++  +   G  P
Sbjct: 702 GLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVP 761

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + ++Y V+I  L+ +    EA      M EK   AP
Sbjct: 762 NASTYGVMIINLLKEGSVEEADIMFSSM-EKTGCAP 796



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 143/328 (43%), Gaps = 18/328 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKK 297
           G   N+  Y+S++              ++ EM ++G+   ++  F   +++         
Sbjct: 512 GLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMN 571

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A  +F L+     +  + T N L++      K+ K   +L   +     P++ TY+ L+ 
Sbjct: 572 AQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLIN 631

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+ +   + +   ++ EM+ K  KP  V ++++L+GL + G+ S A K+F  M   G + 
Sbjct: 632 GYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAM 691

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ +YTI++   C+ N       IT F     M++ +++                N +I 
Sbjct: 692 SISTYTIILQGLCRNNCTDEA--ITLFHKLGAMNLKFEI-------------AILNTMIH 736

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +   K  +EA  ++  +  SG  P   TY +++ +  + G+ E    ++  M + GC P
Sbjct: 737 ALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAP 796

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                  +I  L+ +    +A  Y+ ++
Sbjct: 797 SSRLLNDIIRMLLQKGEIVKAGYYMSKV 824


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 159/343 (46%), Gaps = 22/343 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           +N +++ + + +Q+ T+ S+  +M   G+   + T  I +N+F        A ++   + 
Sbjct: 70  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKIL 129

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +    T   L+  L       +A  LFDK+    F PN+ TY  L+ G C+V N  
Sbjct: 130 KLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTN 189

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M     +PDVV +  +++ L K  + ++A  LF  M  +G SP++ +YT +I
Sbjct: 190 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLI 249

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      +  +++ ++       ++   +D++  M  RG  
Sbjct: 250 HSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 309

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYNAL+    +Q   DEAV+++  MV +G+ P + +YN ++  Y +    +    +
Sbjct: 310 PNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYL 369

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++EM ++   P+  +Y  L+ GL    R  +A     EM+  G
Sbjct: 370 FEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG 412



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 166/362 (45%), Gaps = 19/362 (5%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-G 272
           ++D L + R     AF  F     + G + +  TY S++  L    +++ + ++L +M  
Sbjct: 213 IIDSLCKDRQVTE-AFNLFSKMVGQ-GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMIN 270

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
            K +  +  F   ++A     +  +A  + ++M     +  V T N L++         E
Sbjct: 271 SKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDE 330

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A  +FD + H  + PN+ +Y  L+ G+C+++ + +A  ++ EM  K   P+ V +N ++ 
Sbjct: 331 AVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH 390

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           GL  +G+  DAI LF  M A G  P++ +Y I++   CK               +  +D 
Sbjct: 391 GLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK---------------KSHLDE 435

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              LLK +E     PD   Y  +I  M      + A  I+  +   G +P + TY +++ 
Sbjct: 436 AMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMIN 495

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              + G  +   K++ EM   GC PD  +Y  +  GL+    +  A + L+EML +G  A
Sbjct: 496 GLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSA 555

Query: 572 PV 573
            V
Sbjct: 556 DV 557



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/485 (22%), Positives = 190/485 (39%), Gaps = 65/485 (13%)

Query: 191 LFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD-KPGFAHNSRTYN 249
           +FSL   M    D  GI      +  ++  F H  RP F F   A   K G   ++ T+ 
Sbjct: 86  VFSLSNQM----DSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFT 141

Query: 250 SMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           +++  L    +    + + ++M GE    ++ T+   +N          A+ +   M + 
Sbjct: 142 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG 201

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-------------------------KH- 342
             +  V     ++++L + +   EA  LF K+                         KH 
Sbjct: 202 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHV 261

Query: 343 ----------RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
                     +  P++  ++ ++   C+   + EA  V + MI +G +P+VV +N +++G
Sbjct: 262 TTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDG 321

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QN 432
                +  +A+K+F+ M   G +PNV SY  +I  +CK                     N
Sbjct: 322 HCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 381

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
              Y  L+ G  +  R+     L  EM   G  PD  TY  L+  +  +   DEA+ + K
Sbjct: 382 TVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLK 441

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            +  S   P I  Y +++    + G  E  R ++  +  +G  P+  +YT++I GL  + 
Sbjct: 442 TIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG 501

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR---FSGKFEVSN 609
              EA K   EM   G       YN     L +   +    +L Q+M    FS     + 
Sbjct: 502 LLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTT 561

Query: 610 VLARW 614
           +L   
Sbjct: 562 LLVEM 566



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 15/220 (6%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A   +N M+     P  V  N +L  + K  +      L   M + G  P+V +  I
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC  N               R    + +L ++ + G  PD  T+  LI+ + ++  
Sbjct: 108 LINSFCHLN---------------RPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGK 152

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             +A+ ++ +M+  GF+P + TY  ++    + GN     ++   M +  C PD   YT 
Sbjct: 153 IGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 212

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +I  L    +  EA+    +M+ +G+   +  Y      L
Sbjct: 213 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 252



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 60/136 (44%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  + +N L+  +   K       +  +M   G  P ++T N+++ S+           
Sbjct: 64  PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFS 123

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++++ G  PD  ++T LI GL  + + G+A    ++M+ +G +  V+ Y      L 
Sbjct: 124 VLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 183

Query: 585 RAGRSYVLDELAQKMR 600
           + G +     L + M 
Sbjct: 184 KVGNTNAAIRLLRSME 199


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 205/449 (45%), Gaps = 26/449 (5%)

Query: 161 NNSESEITSVSYK-STADP--REI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVD 216
           N+ ESE     +K S  DP  R + ER  +++ ++F    + E  L+   + + H LV  
Sbjct: 40  NHEESEKPQEKWKLSRKDPSVRMLDERFIRIV-KIFKWGPDAEKALEVLKLKVDHRLVRS 98

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           +LE          +FF WAG +  F H+  TY +++  L  AR +  M   ++E+     
Sbjct: 99  ILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMALIRCLEEARLYGEMYRTIQEVVRNTY 157

Query: 277 LSMETFKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
           +S+    ++  + A   AK   KA+++F      K K    T N ++  L +    ++  
Sbjct: 158 VSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVH 217

Query: 335 LLFDKLKHRFT--PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
            ++ ++ +     P+  TY+ L+  + ++     A R+++EM D   +P    +  +L  
Sbjct: 218 EVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGI 277

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
             K+GK   A+ LFE MK  G SP V  YT             YT LI G G   R++  
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTV--YT-------------YTELIKGLGKAGRVEEA 322

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           YDL K M   G  PD +  N L+ ++      +E   ++ EM      PT+ +YN ++K+
Sbjct: 323 YDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKA 382

Query: 513 YFQTGNYEMGRKVW-DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            F++         W D+M   G  P + +Y++LI G    +R  +A   LEEM EKG   
Sbjct: 383 LFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
               Y      L +A R    +EL ++++
Sbjct: 443 CPAAYCSLINALGKAKRYEAANELFKELK 471



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 156/343 (45%), Gaps = 18/343 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAKERK 296
           + G +    TY  ++  LG+A + E    + + M   GL     F    MN        +
Sbjct: 296 RAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLE 355

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHR-FTPNLTTYTVL 354
           +   +F  M  ++    V + N +++ L  SK P  E    FDK+K    +P+  TY++L
Sbjct: 356 ELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSIL 415

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+   + +A  +  EM +KGF P   A+  ++  L K  +   A +LF+ +K    
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN-- 473

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                        F   ++ VY  +I  FG   ++    DL  EM+ +G  PD   YNAL
Sbjct: 474 -------------FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  M    M +EA  + ++M  +G    I+++N+I+  + +TG      ++++ M   G 
Sbjct: 521 MSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGI 580

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            PD  +Y  L+G         EA + + EM +KG +   + Y+
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYS 623



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 164/377 (43%), Gaps = 26/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TY++++S   +  + ++ + + +EM +  +   E  +   +  +    + +KA+ +FE M
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +      V T   L++ LG++   +EA  L+ + L    TP++     L+    +V  L
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRL 354

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-GKRSDAIKLFEVMKAKGPSPNVRSYTI 423
            E   V+NEM      P VV++N +++ L +     S+    F+ MKA G SP+  +Y+I
Sbjct: 355 EELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSI 414

Query: 424 MIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  +CK N                     A Y  LI   G  +R +   +L KE++E  
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
                  Y  +IK         EAV ++ EM   G  P ++ YN +M    + G      
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEAN 534

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M   GC  D NS+ +++ G         A +  E M   G+K   + YN      
Sbjct: 535 SLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCF 594

Query: 584 SRAGRSYVLDELAQKMR 600
           + AG   + +E A+ MR
Sbjct: 595 AHAG---MFEEAARLMR 608



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKER 295
           D+ GF      Y S+++ LG+A+++E    + +E+ E  G +S   + + +  F    + 
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +AV +F  M        V   N L+  + ++ +  EA  L  K++    T ++ ++ ++
Sbjct: 496 SEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNII 555

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L G+ R      A  ++  M   G KPD V +N +L      G   +A +L   MK KG 
Sbjct: 556 LNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGF 615

Query: 415 SPNVRSYTIMI 425
             +  +Y+ ++
Sbjct: 616 EYDAITYSSIL 626


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 168/375 (44%), Gaps = 19/375 (5%)

Query: 233 CWAGD--KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           C+ G   K GF  +  T+ S+++      + E  +++ +++   G   ++ T+   +   
Sbjct: 139 CFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCL 198

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNL 348
              +    AV +F  M     +  V T N L+  L    +    A LL D +K R  PN+
Sbjct: 199 CKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNV 258

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            T+T L+  + +V  LMEA  ++N MI     PDV  +  ++ GL   G   +A ++F +
Sbjct: 259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYL 318

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           M+  G               C  N  +YT LI GF   +R++    +  EM ++G   + 
Sbjct: 319 MERNG---------------CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANT 363

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TY  LI+   +   PD A  ++ +M      P I TYN+++      G  E    +++ 
Sbjct: 364 ITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEY 423

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           M +R    +  +YT++I G+    +  +A+     +  KGMK  V+ Y    +   R G 
Sbjct: 424 MRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGL 483

Query: 589 SYVLDELAQKMRFSG 603
            +  D L +KM+  G
Sbjct: 484 IHEADSLFKKMKEDG 498



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 117/275 (42%), Gaps = 22/275 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P L T  +++   C       A     +M+  GF+PD+V    +L G     +  DAI L
Sbjct: 116 PLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIAL 175

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
           F+ +   G  PNV +YT +I   CK                     N   Y  L+TG   
Sbjct: 176 FDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCE 235

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             R      LL++M +R   P+ +T+ ALI   +K+ K+  EA  +Y  M++    P + 
Sbjct: 236 IGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLM-EAKELYNVMIQMSVYPDVF 294

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY  ++      G  +  R+++  M R GC P++  YT LI G     R  +  K   EM
Sbjct: 295 TYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEM 354

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            +KG+ A  + Y          GR  V  E+  +M
Sbjct: 355 SQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 138/293 (47%), Gaps = 26/293 (8%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           G +P    N  TYN++++ L    ++     +L +M ++ +  ++ TF   ++AF    +
Sbjct: 218 GSRP----NVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK 273

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTV 353
             +A  ++ +M +      V T   L+  L    L  EA+ +F  + ++   PN   YT 
Sbjct: 274 LMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTT 333

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G+C+ K + +  +++ EM  KG   + + + ++++G   +G+   A ++F  M ++ 
Sbjct: 334 LIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRR 393

Query: 414 PSPNVRSYTI---------------MIWKFCKQ-----NAAVYTCLITGFGNRRRMDIVY 453
             P++R+Y +               MI+++ ++     N   YT +I G     +++  +
Sbjct: 394 APPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAF 453

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           DL   +  +G  P+ +TY  +I     + +  EA  ++K+M   GF P    Y
Sbjct: 454 DLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 15/189 (7%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +DA+ LF  M    P P++  +T ++    K N               R D+V  L ++M
Sbjct: 65  NDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMN---------------RYDVVISLFEQM 109

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +  G PP   T N ++  + +   P  A     +M++ GF+P + T+  ++  Y      
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E    ++D+++  G  P+  +YT LI  L        A +   +M   G +  V+ YN  
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 580 AADLSRAGR 588
              L   GR
Sbjct: 230 VTGLCEIGR 238


>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
 gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
          Length = 643

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 207/481 (43%), Gaps = 51/481 (10%)

Query: 154 SDGECDGNNSESEITSVSYKSTADPREIER--VCKVI------DELFSLDRNMEAVLDEC 205
           +DG  +GN S++      Y  T  P + ++  +C           + +  R M A++D  
Sbjct: 27  ADGLNNGNGSQTTKEKHEYNGTLQPSKGQKPQLCTTCAKGHTCQSVINRTRQMRALIDSN 86

Query: 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
               +H++   ++E                G KP       TY  +++ L   R FE++ 
Sbjct: 87  KPYQAHSVFKHLMEE---------------GHKPSLV----TYTILLTALTNQRMFESIP 127

Query: 266 SMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
           S+L ++   G+     F  A+ NAF  AK   +A+  F  M          T N L++  
Sbjct: 128 SLLAQVELAGIRPDSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGY 187

Query: 325 GRSKLPKEAQLLFD--KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           G    P+E+Q +FD   ++    PNLTTY +L+  WC  +NL EA  V  +M   G +PD
Sbjct: 188 GIVGKPEESQRVFDMMGIEGSIKPNLTTYNILVKAWCDRRNLEEAWGVVGKMRAGGVEPD 247

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           +V +N +        +   A +L   ++ +  +   R++ I+I  +C++           
Sbjct: 248 IVTYNTIASAYANNDETWRAEELIVEIQTRVRTSE-RTWGIIIGGYCRESRLEEALRCVQ 306

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    N  ++  L+ GF +   M  V ++L  ME+ G  PD +TY+  +       
Sbjct: 307 QMKDAGIVPNVVIFNTLLKGFLDVNDMAAVNNILGLMEQFGIKPDIVTYSHQLNTFSSLG 366

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              + ++++ +M+ +G +P    Y+++ K + +    E    +  +M   G CP+  ++T
Sbjct: 367 HMAKCMKVFDKMIEAGIEPDPQVYSILAKGFVRAKQPEKAEDLLLQMSHLGVCPNVVTFT 426

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
            +I G  S      A +  E+M + G+   +  +       S   + +  +E+ Q MR +
Sbjct: 427 TVISGWCSVADMESAMRVYEKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRET 486

Query: 603 G 603
           G
Sbjct: 487 G 487



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/389 (20%), Positives = 154/389 (39%), Gaps = 60/389 (15%)

Query: 191 LFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTY 248
           +F    ++ A ++  GI         ++  F  A+R   A   F W     G    + T+
Sbjct: 122 MFESIPSLLAQVELAGIRPDSIFFNALINAFVEAKRMGEAINTF-WKMKHSGCHPTTSTF 180

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           N+++   G   + E    + + MG +G +  ++ T+ I + A+   +  ++A  +   M 
Sbjct: 181 NTLIKGYGIVGKPEESQRVFDMMGIEGSIKPNLTTYNILVKAWCDRRNLEEAWGVVGKMR 240

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
               +  + T N +      +     A+ L  +++ R   +  T+ +++GG+CR   L E
Sbjct: 241 AGGVEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCRESRLEE 300

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKI------------------------------ 396
           A R   +M D G  P+VV  N +L+G L +                              
Sbjct: 301 ALRCVQQMKDAGIVPNVVIFNTLLKGFLDVNDMAAVNNILGLMEQFGIKPDIVTYSHQLN 360

Query: 397 -----GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
                G  +  +K+F+ M   G  P+ + Y+I+   F +                     
Sbjct: 361 TFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGFVRAKQPEKAEDLLLQMSHLGVCP 420

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   +T +I+G+ +   M+    + ++M + G  P+  T+  LI     QK P +A  + 
Sbjct: 421 NVVTFTTVISGWCSVADMESAMRVYEKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVL 480

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           + M  +G KP   T+ +I  ++   G  E
Sbjct: 481 QMMRETGVKPKESTHRLIADAWKAVGLIE 509


>gi|125600971|gb|EAZ40547.1| hypothetical protein OsJ_25002 [Oryza sativa Japonica Group]
          Length = 514

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 49/470 (10%)

Query: 177 DPREIERVCKVIDELF-----SLDRNMEAV-LDECGINLSHNLVVDVLERFRHARRPAFR 230
           DP  + R+C V+ +       +L R + A+ L     +    L +    RF  + RP  R
Sbjct: 45  DPSLLLRLCTVLYQHQHAPEDALRRRLSALPLPSAAADDLRELFLQASARFPLSWRPVRR 104

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290
                    GFAH+  T    + +L ++R  + + S L       L S+   + A+   A
Sbjct: 105 LLDHLTAAHGFAHSPATAARFLDVLAKSRNVDLLHSTLLSF-PPALRSLAALRAAIRGLA 163

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT 350
            A+E  K  ++  L         ++ I  ++ ++   KLP  A+ +  + +HR+  + T 
Sbjct: 164 PAREVGKVSSLLALFPDADRPRTLNFITDVVCSV--CKLPDVAEKVIKQAEHRYGVSRTG 221

Query: 351 YT--VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
               +L+ G+CR   L +A RVWN M  +G  P   A+  ++  L K  + +DA+K+F+ 
Sbjct: 222 RCCELLVVGYCRAGMLSDACRVWNGMERRGLDPGAAAYEEIVVTLFKNNRVADAMKVFDG 281

Query: 409 MKAKGPSPNVRS--YTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
           M+ +G S   R   Y  ++   CK+                    +  V   L+ G   R
Sbjct: 282 MRRRGVSDGGRGGCYRAVVSWLCKEGRMWGAYMVFAEMFKRGVEVDGEVMGDLVYGLLVR 341

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           RR+   Y +   ++E+    D   Y+ L+K +   K   EA  +++EMV +G +P +HTY
Sbjct: 342 RRVREGYRVFHGVKEK----DIALYHGLMKGLIRIKRAREATEVFREMVATGCEPNMHTY 397

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            M+++ +      + GRK  D ++        N  ++ +GGL+   R+ EA K++E  + 
Sbjct: 398 IMLLQGHLG----KRGRKGRDPLV--------NFESIFVGGLVKAGRTLEATKFVERTMW 445

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
            G+  P  DYNKF    S      + +E+ ++++  G  ++ ++   + E
Sbjct: 446 GGVDVPRFDYNKFLYYFSNEDGVSMFEEVGRRLKDVGHVDLGDIFLTYGE 495


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 164/360 (45%), Gaps = 22/360 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ + + + + T++S+  +M   G+  ++ T  I +N+F        A ++   + 
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 118

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +    T   L+  L       EA  LFDK+    F PN+ TY  L+ G C+V N  
Sbjct: 119 KLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTS 178

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M     +PDVV +  +++ L K  + ++A  LF  M  +G SP++ +YT ++
Sbjct: 179 AAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 238

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      +  +++ ++       ++   ++++  M +RG  
Sbjct: 239 HALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 298

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY  L+    +Q   DEAV+++  MVR GF P + +Y  ++  Y +    +    +
Sbjct: 299 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 358

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++EM R+   PD  +Y  L+ GL    R  +A     EM+ +G    ++ Y+     L +
Sbjct: 359 FEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCK 418



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 168/362 (46%), Gaps = 19/362 (5%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-G 272
           ++D L + R     AF  F     + G + +  TY S++  L    +++ + ++L +M  
Sbjct: 202 IIDSLCKDRQVTE-AFNLFSQMVGQ-GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 259

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
            K L  +  F   ++A     +  +A  I ++M +   +  V T   L++         E
Sbjct: 260 SKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE 319

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A  +FD +  + F P++ +YT L+ G+C++  + +A  ++ EM  K + PD   +N ++ 
Sbjct: 320 AVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMH 379

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           GL  +G+  DAI LF  M A+G  P++ +Y+I++   CK       C          ++ 
Sbjct: 380 GLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN------C---------HLEE 424

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              LLK +E     PD   YN +I  M      + A  ++  +   G  P++ TYN+++ 
Sbjct: 425 AMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIH 484

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              + G      K++ EM    C PD  +Y  +  G +  + +  A + LEEML +G  A
Sbjct: 485 GLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSA 544

Query: 572 PV 573
            V
Sbjct: 545 DV 546



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 143/334 (42%), Gaps = 25/334 (7%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQ 334
           S+  F   + + A  K     +++   M+ +     V T+N L+    +L R        
Sbjct: 55  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVL 114

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
               KL H+  P+ TT+T L+ G C    + EA  ++++MID+GF+P+VV +  ++ GL 
Sbjct: 115 AKILKLGHQ--PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 172

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           K+G  S AI+L   M+     P+V  YT +I   CK                     +  
Sbjct: 173 KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIF 232

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            YT L+    N      V  LL +M      PD + ++ ++  +  +    EA  I   M
Sbjct: 233 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM 292

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           ++ G +P + TY  +M  +      +   KV+D M+R+G  PD  SYT LI G     + 
Sbjct: 293 IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKI 352

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A    EEM  K        YN     L   GR
Sbjct: 353 DKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGR 386



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 17/319 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y S++  L + RQ     ++  +M  +G+   + T+   ++A     E K    +   M 
Sbjct: 199 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 258

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
             K    V   + +++ L +     EA  + D +  R   P++ TYT L+ G C    + 
Sbjct: 259 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 318

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA +V++ M+ KGF PDV+++  ++ G  KI K   A+ LFE M  K   P+ ++Y  ++
Sbjct: 319 EAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLM 378

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C                  R+     L  EM  RG  PD +TY+ L+  +      +
Sbjct: 379 HGLCHVG---------------RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLE 423

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ + K +  S   P I  YN+I+    + G  E  R ++  +  +G  P   +Y ++I
Sbjct: 424 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 483

Query: 546 GGLISQDRSGEAYKYLEEM 564
            GL  +    EA K   EM
Sbjct: 484 HGLCKRGLLNEANKLFMEM 502



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 23/277 (8%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+  +   +V M+ + G +    + T+   M+      E  +AV +F++M +  F   V 
Sbjct: 280 GKVTEAHEIVDMMIQRGVEP--DVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVI 337

Query: 316 TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           +   L+    +     +A  LF+++ +  + P+  TY  L+ G C V  L +A  +++EM
Sbjct: 338 SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEM 397

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--- 431
           + +G  PD+V ++I+L+ L K     +A+ L + ++A   +P+++ Y I+I   C+    
Sbjct: 398 VARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGEL 457

Query: 432 -----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            +   Y  +I G   R  ++    L  EM+   C PDG TYN +
Sbjct: 458 EAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTI 517

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            +          A+++ +EM+  GF   + T  ++++
Sbjct: 518 ARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVE 554



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 125/322 (38%), Gaps = 60/322 (18%)

Query: 337 FDKLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM------ 389
           F++L H   P ++  +  LL    ++K+      +  +M   G  P+V   NI+      
Sbjct: 44  FNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCH 103

Query: 390 ----------LEGLLKIGKRSD-------------------AIKLFEVMKAKGPSPNVRS 420
                     L  +LK+G + D                   A+ LF+ M  +G  PNV +
Sbjct: 104 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVT 163

Query: 421 YTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y  +I   CK                     +  +YT +I      R++   ++L  +M 
Sbjct: 164 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV 223

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G  PD  TY +L+  +           +  +MV S   P +  ++ ++ +  + G   
Sbjct: 224 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVT 283

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++ D MI+RG  PD  +YT L+ G   Q    EA K  + M+ KG    V+ Y    
Sbjct: 284 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 343

Query: 581 ADLSRAGR----SYVLDELAQK 598
               +  +     Y+ +E+ +K
Sbjct: 344 NGYCKIHKIDKAMYLFEEMCRK 365



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 113/261 (43%), Gaps = 22/261 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY ++M       + +  V + + M  KG    + ++   +N +    +  KA
Sbjct: 296 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 355

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           + +FE M + ++     T N L+  L      ++A  LF ++  R   P+L TY++LL  
Sbjct: 356 MYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDS 415

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  +L EA  +   +      PD+  +NI+++G+ + G+   A  LF  + +KG  P+
Sbjct: 416 LCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 475

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y IMI   CK+                    +   Y  +  GF           LL+
Sbjct: 476 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLE 535

Query: 458 EMEERGCPPDGLTYNALIKLM 478
           EM  RG   D  T   L++++
Sbjct: 536 EMLARGFSADVSTTTLLVEML 556



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  + +  L+  +   K     + +  +M   G  P ++T N+++ S+           
Sbjct: 53  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 112

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++++ G  PD  ++T LI GL  + + GEA    ++M+++G +  V+ Y      L 
Sbjct: 113 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 172

Query: 585 RAGRSYVLDELAQKMR 600
           + G +     L + M 
Sbjct: 173 KVGNTSAAIRLLRSME 188


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 185/397 (46%), Gaps = 27/397 (6%)

Query: 217 VLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GE 273
           VL+  +  + P  A   F  A   PG+AH    ++ ++  L   +    +  +++ M  +
Sbjct: 13  VLKLLKAEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGRIVDLMRAQ 72

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           +   S +    A+ A+A      +A+ +F+ +++ +    G+ + N +L     S   +E
Sbjct: 73  RCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWRE 132

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A+L F   +    +PNL TY +L+   C+ +   +   +   M + G  PD++++  ++ 
Sbjct: 133 AELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLIN 192

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM---------------IWKFCKQNAAV- 435
            L K G   DA++LF+ M  +G +P+V  Y I+               IWK     ++V 
Sbjct: 193 ALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVY 252

Query: 436 -----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
                Y  +I G     ++D   ++   M++    PD  T++++I  +      + A ++
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKV 312

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           ++EM+ SG  P + TYN ++   F+TG      ++W+ M +  CC +  SY +LI GL+ 
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLD 371

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +  +A  Y + + E+G+KA    Y      L + G
Sbjct: 372 NKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNG 408



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 199/464 (42%), Gaps = 65/464 (14%)

Query: 185 CKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFA 242
           C + D+  +L +NM   +D  G N        +L  F  +   R A  FF +     G +
Sbjct: 91  CSMPDQALNLFQNM---VDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYF-QTAGMS 146

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAI 301
            N +TYN ++ I  + RQFE    +L  M E GL   + ++   +NA A +     AV +
Sbjct: 147 PNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVEL 206

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWC 359
           F+ M+       V   N L++   R     +A  ++ +L  +    P++ TY +++ G C
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLC 266

Query: 360 RVKNLMEAGRVWN-----------------------------------EMIDKGFKPDVV 384
           ++  L E+  +WN                                   EMI+ G  PDV 
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVR 326

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------WKFC 429
            +N ML GL + GK +   +L+ VM +K    N+ SY ++I               W+  
Sbjct: 327 TYNAMLSGLFRTGKLNKCFELWNVM-SKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLL 385

Query: 430 -----KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                K ++  Y  LI G      ++    +L+E E  G   D   Y++++  +  + M 
Sbjct: 386 HERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGML 445

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           ++AV +  +M ++  K   H +N ++  Y +    E    V  EM  + C P   SY  +
Sbjct: 446 EQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTI 505

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           I GL   +R  +AY  L+EMLE+G+K  ++ Y+     L R  +
Sbjct: 506 INGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEK 549



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 157/353 (44%), Gaps = 23/353 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T++SM+  L +A  F     + +EM E GL   + T+   ++      +  K   ++ +M
Sbjct: 292 TFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVM 351

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           +K      + + N L++ L  +K  ++A   +  L  R    + TTY +L+ G C+   L
Sbjct: 352 SKNNC-CNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYL 410

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN------- 417
            +A R+  E  ++G   D  A++ M+ GL K G    A++L   MK      N       
Sbjct: 411 NKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSL 470

Query: 418 ----VRSYTI---------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
               VR++ +         M  K C      Y  +I G     R    Y  LKEM E G 
Sbjct: 471 INGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGL 530

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TY+ LI  +   +  D A+ ++ + +    KP +  +N+I+         ++  +
Sbjct: 531 KPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALE 590

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           ++ +M +  C PD  ++  ++ GL       EA K  + +LE G++  ++ YN
Sbjct: 591 IFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYN 643



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 159/351 (45%), Gaps = 21/351 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G + + RTYN+M+S L R  +      +   M +    ++ ++ + +      K+ ++A+
Sbjct: 320 GLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAI 379

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             ++L+++   KA   T   L+  L ++  L K  ++L +        +   Y+ ++ G 
Sbjct: 380 CYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGL 439

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   L +A  + ++M     K +    N ++ G ++  K  +AI +   MK+K  +P V
Sbjct: 440 CKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTV 499

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            SY  +I   CK                     +   Y+ LI G     ++D+  +L  +
Sbjct: 500 VSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQ 559

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
              +   PD   +N +I  +   +  D A+ I+ +M +    P + T+N IM+  ++ G+
Sbjct: 560 CINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGD 619

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                K+WD ++  G  PD  SY +   GL S  R  +A ++L + L++G+
Sbjct: 620 CVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGI 670



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 129/279 (46%), Gaps = 17/279 (6%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKE 294
            +  G   ++  Y+SM+  L +    E  V ++ +M + +  L+   F   +N +  A +
Sbjct: 420 AENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFK 479

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHRFTPNLTTYTV 353
            ++A+++   M        V + N ++  L +++   +A L L + L+    P++ TY++
Sbjct: 480 LEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSL 539

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G CR + +  A  +W++ I+K  KPD+  HNI++ GL    K   A+++F  M+   
Sbjct: 540 LIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVN 599

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P++ ++  ++    K    V    I            +D    + E G  PD ++YN 
Sbjct: 600 CVPDLVTHNTIMEGLYKAGDCVEALKI------------WD---RILEAGLQPDIISYNI 644

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             K +       +A+    + +  G  P   T+N+++++
Sbjct: 645 TFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRA 683



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 188 IDELFSLDRNMEAVLDECGINL-SHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAH 243
           ++E  S+ R M++   +C   + S+N +++ L   ERF  A   + +     G KP    
Sbjct: 480 LEEAISVLREMKS--KDCAPTVVSYNTIINGLCKAERFSDAYL-SLKEMLEEGLKPDMI- 535

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
              TY+ ++  L R  + +  +++  +   K L   ++   I ++    A++   A+ IF
Sbjct: 536 ---TYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIF 592

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
             M +      + T N ++E L ++    EA  ++D+ L+    P++ +Y +   G C  
Sbjct: 593 TQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSC 652

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
             + +A     + +D+G  P+    N+++  ++
Sbjct: 653 ARVSDAIEFLYDALDRGILPNAPTWNVLVRAVV 685


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 23/355 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERK 296
           + GF+ +S T   ++    R  +F  +  +   M E G   ++  +   ++        K
Sbjct: 209 REGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVK 268

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVL 354
           +A  + E M     K  V T   L++ L +    + A  LF KL     + PN+ TYTV+
Sbjct: 269 QAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVM 328

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +GG+C+   L  A  +   M+++G  P+   +  +++G  + G    A +L   MK +G 
Sbjct: 329 IGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGF 388

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN+ +Y  +I  FCK+                    +   YT LIT    +  +    D
Sbjct: 389 LPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALD 448

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  +M E  C PD  TY  +I +   Q+  +++ +++ + +  G  PT  TY  ++  Y 
Sbjct: 449 LFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYC 508

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + G      KV++ M++ GC PD  +Y  LI GL  + R  EA    E ML+K M
Sbjct: 509 RVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHM 563



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 21/265 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+  YT  + G C+   + +A  V  EM+ KG KP+V  H  +++GL KIG    A +L
Sbjct: 249 PNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRL 308

Query: 406 F-EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           F +++K+    PNV +YT+MI  +CK+                    N   YT LI G  
Sbjct: 309 FLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHC 368

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                D  ++L+ +M+  G  P+  TYNA+I     +    +A ++ +     G  P   
Sbjct: 369 RGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKV 428

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY M++  + + G+      ++++M    C PD ++YT +I     Q +  ++ +  ++ 
Sbjct: 429 TYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKC 488

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRS 589
           L  G+      Y    A   R G+S
Sbjct: 489 LSIGLVPTKQTYTSMIAGYCRVGKS 513



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 18/258 (6%)

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            A+  FD +  R  P+  ++  L+ G C+     EA  +   M  +GF  D     +++ 
Sbjct: 167 HARQAFDGMGVR--PDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVR 224

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
              + G+  D   LF  M   G  PNV +YT  +   CK               R  +  
Sbjct: 225 AFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCK---------------RGYVKQ 269

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIM 510
            + +L+EM  +G  P+  T+ +LI  +      + A R++ ++V+S  +KP +HTY +++
Sbjct: 270 AFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMI 329

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             Y + G       +   M+ +G  P+ N+YT LI G         A++ + +M  +G  
Sbjct: 330 GGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFL 389

Query: 571 APVLDYNKFAADLSRAGR 588
             +  YN       + G+
Sbjct: 390 PNIYTYNAIIGGFCKKGK 407



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 16/227 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G +PD  +   ++ G  + G+  +A  L   M  +G S +  + T+++  FC+Q      
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQG----- 230

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                     R   V  L   M E G PP+ + Y A +  +  +    +A  + +EMV  
Sbjct: 231 ----------RFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGK 280

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGE 556
           G KP ++T+  ++    + G  E   +++ ++++     P+ ++YTV+IGG   + +   
Sbjct: 281 GLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLAR 340

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A   L  M+E+G+      Y        R G      EL  KM+  G
Sbjct: 341 AEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEG 387



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 123/295 (41%), Gaps = 20/295 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  N  TYN+++    +  + +    +L     +GL   + T+ + +           A
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYA 446

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           + +F  M +      +DT   ++    + +  +++Q LFDK L     P   TYT ++ G
Sbjct: 447 LDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAG 506

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CRV     A +V+  M+  G  PD + +  ++ GL K  +  +A  LFE M  K   P 
Sbjct: 507 YCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPC 566

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +   + +++C+               R +  I    L  +++R         +AL++ 
Sbjct: 567 DVTCVTLAYEYCR---------------RDKTTIAVSFLDGLDKR---QQAHAADALVRK 608

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           +      D A    K ++   +     TY   + S +++  Y +  ++ +++ +R
Sbjct: 609 LSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKISKR 663


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 173/377 (45%), Gaps = 26/377 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQF-ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           K G+  N+   N ++  L  A++  E M  +++ M E G    + ++   +  F   K  
Sbjct: 122 KSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRA 181

Query: 296 KKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
           ++A+ +  +M   + ++     V     +       ++ K   L  + +     PN+ TY
Sbjct: 182 EEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTY 241

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           T ++ G C+ + +  A  V+ +MIDKG KPD   +N ++ G L IGK  + +++ E M A
Sbjct: 242 TTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA 301

Query: 412 KGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDI 451
            G  P+  +Y  ++   C                    K N A+Y  LI G+  +  +  
Sbjct: 302 HGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSE 361

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++DLL  M E G  PD   +N +      + M DEA+ I+ +M + G  P +  +  ++ 
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALID 421

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           +  + G  +     +++M+  G  P+   +  L+ GL + D+  +A ++  EML +G++ 
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRP 481

Query: 572 PVLDYNKFAADLSRAGR 588
            V+ +N    +L   G+
Sbjct: 482 DVVFFNTILCNLCTKGQ 498



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 166/404 (41%), Gaps = 22/404 (5%)

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNA 288
           RFF  +  + G   N   Y  ++           M  +L  M E GL      F I   A
Sbjct: 328 RFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPN 347
           +A      +A+ IF  M +      V     L++ L +     +A L F+++ +    PN
Sbjct: 388 YAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPN 447

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           +  +  L+ G C V    +A   + EM+++G +PDVV  N +L  L   G+   A +L +
Sbjct: 448 IFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLID 507

Query: 408 VMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRR 447
           +M+  G  P+V SYT +I   C                    K +   Y  L+ G+    
Sbjct: 508 LMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAG 567

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R+D  Y + +EM   G  P  +TY+ ++  +   +   EA  +Y  M+ SG +  I  YN
Sbjct: 568 RIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYN 627

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +I+    +    +   K++  +  +    +  ++ ++IG L    R+ +A      +   
Sbjct: 628 IILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSY 687

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           G+   V  Y   A +L   G     D+L   M  SG    S +L
Sbjct: 688 GLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRML 731



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 35/314 (11%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENL----GRSKLPKEAQL---LFDKLKH----RFTP 346
           A+ +F+ +  +   A +   N LL  +    GR     E++L   LF+++      + TP
Sbjct: 33  ALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTP 92

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK-L 405
           +L TY++L+G +CR+  L      +  ++  G++ + +  N +L+GL    +  +A+  L
Sbjct: 93  DLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDIL 152

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ-----------------------NAAVYTCLITG 442
            + M   G +P+V SY  ++  FC +                       N   Y  +I G
Sbjct: 153 IKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVING 212

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           F    ++D  Y+L  EM +RG  P+ +TY  +I  +   ++ D A  ++++M+  G KP 
Sbjct: 213 FFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPD 272

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN ++  Y   G ++   ++ +EM   G  PD  +Y  L+  L +  R  EA  + +
Sbjct: 273 NDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFD 332

Query: 563 EMLEKGMKAPVLDY 576
            M+ KG+K  V  Y
Sbjct: 333 SMIRKGIKPNVAIY 346



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 134/320 (41%), Gaps = 22/320 (6%)

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCR 360
           FE++N+   +  V   N +L NL       +AQ L D ++   T P++ +YT L+GG C 
Sbjct: 472 FEMLNQ-GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCL 530

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           V  + EA +  + M+  G KPD   +N +L G  + G+  DA  +F  M   G +P V +
Sbjct: 531 VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVT 590

Query: 421 YTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+                     MI    + N  +Y  ++ G      +D  + L + + 
Sbjct: 591 YSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLC 650

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +    +  T+N +I  +      ++A+ ++  +   G  P + TY +I ++  + G  E
Sbjct: 651 SKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLE 710

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               ++  M + G  P+      L+  L+ +     A  YL ++ EK             
Sbjct: 711 EFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLI 770

Query: 581 ADLSRAGRSYVLDELAQKMR 600
           + LSR    +    L +K R
Sbjct: 771 SLLSRDEYHHHATSLPEKYR 790


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 155/307 (50%), Gaps = 17/307 (5%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
            G A ++ TYNS++   G++ +   +  + +EM  +G   +  T+ + ++    +    KA
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
            + ++  +    F     T   L++ L +S    +A  +FD + H    PN   Y +L+ G
Sbjct: 880  MDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNG 939

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            + ++ ++  A   +  M+ +G +PD+ ++ I+++ L   G+  DA+  FE +K  G  P+
Sbjct: 940  YGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            + +Y +MI                G G  +R +    L  EM+ RG  PD  TYN+LI  
Sbjct: 1000 LVAYNLMI---------------NGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILN 1044

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
            + I  M +EA +IY+E+   G KP + TYN +++ Y  +GN E+   ++ +M+  GC P+
Sbjct: 1045 LGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104

Query: 538  DNSYTVL 544
              ++  L
Sbjct: 1105 TGTFAQL 1111



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 173/387 (44%), Gaps = 24/387 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + +T++++M   G+ R  +T++ +LEEM   GL  ++ T+ I +       +  +A
Sbjct: 224 GLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEA 283

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I + M+       V T   L++ L  ++   +A  LF K+K     P+  TY  LL  
Sbjct: 284 YRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDK 343

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +    +L +  ++W EM   G+ PDVV   I++  L K G+ ++A  L + M+ +G  PN
Sbjct: 344 FSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPN 403

Query: 418 VRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I    + N                    A  Y  LI   G         +  +
Sbjct: 404 LHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFE 463

Query: 458 EMEERGCPPDGLTYNA-LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M+ RG  P+ +  NA L  L ++ ++  EA  ++ E+  SG  P   TYNM+MK Y + 
Sbjct: 464 KMKARGIAPNIVACNASLYSLAEMGRL-GEAKAMFNELKSSGLAPDSVTYNMMMKCYSKV 522

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +   K+  EM +  C PD      LI  L    R  EA++    M E  +   V+ Y
Sbjct: 523 GQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTY 582

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           N   A L + G+     +L + M   G
Sbjct: 583 NILLAGLGKEGQIQKAVQLFESMNGHG 609



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 66/370 (17%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A  +F   G+ P   H + T N M+ IL   R+ E M                       
Sbjct: 107 ALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDM----------------------- 143

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
           AF           +F+LM +   +  VDT   + ++L      ++A    +K++   F  
Sbjct: 144 AF-----------VFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVL 192

Query: 347 NLTTYTVLL-----GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           N  +Y  L+      G+C+     EA  V+  M+ +G KP +   + ++   +  GKR +
Sbjct: 193 NAYSYNGLIHFLLQSGFCK-----EALEVYRRMVSEGLKPSLKTFSALM---VASGKRRN 244

Query: 402 ---AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
               + L E M++ G  PN+ +YTI I                  G   ++D  Y ++K 
Sbjct: 245 IKTVMGLLEEMESMGLRPNIYTYTICIRVL---------------GRDGKIDEAYRIMKR 289

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M++ GC PD +TY  LI  +   +  D+A+ ++ +M  S  KP   TY  ++  +   G+
Sbjct: 290 MDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGH 349

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   K+W EM   G  PD  ++T+L+  L    R  EA+  L+ M ++G+   +  YN 
Sbjct: 350 LDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNT 409

Query: 579 FAADLSRAGR 588
             + L RA R
Sbjct: 410 LISGLLRANR 419



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 163/354 (46%), Gaps = 19/354 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + GF  N+ +YN ++  L ++   +  + +   M  +GL  S++TF   M A    +  K
Sbjct: 187 EAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIK 246

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
             + + E M     +  + T    +  LGR     EA  +  ++      P++ TYTVL+
Sbjct: 247 TVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLI 306

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C  + L +A  ++ +M     KPD V +  +L+     G      K++  M+A G +
Sbjct: 307 DALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA 366

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V ++TI++   CK                 R++  +DLL  M ++G  P+  TYN LI
Sbjct: 367 PDVVTFTILVNALCKAG---------------RINEAFDLLDTMRKQGVLPNLHTYNTLI 411

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             L++  ++ D+A+ ++  M   G +PT +TY +++  + ++G+     + +++M  RG 
Sbjct: 412 SGLLRANRL-DDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGI 470

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            P+  +    +  L    R GEA     E+   G+    + YN      S+ G+
Sbjct: 471 APNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 153/342 (44%), Gaps = 18/342 (5%)

Query: 263  TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
              V   +E+G K   +++ + + ++ F      + A  +FE M          T N L++
Sbjct: 776  VFVKFTKELGVKP--TLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLID 833

Query: 323  NLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
              G+S    E   L+D++  R   PN  TY +++    +   L +A  ++  ++   F P
Sbjct: 834  AHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSP 893

Query: 382  DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
                   +++GLLK G+  DA ++F+ M   G               C+ N+A+Y  L+ 
Sbjct: 894  TPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYG---------------CRPNSAIYNILVN 938

Query: 442  GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            G+G    +D   +  K M + G  PD  +Y  L+ ++ I    D+A+  ++++ ++G  P
Sbjct: 939  GYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDP 998

Query: 502  TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
             +  YN+++    ++   E    ++ EM  RG  PD  +Y  LI  L       EA K  
Sbjct: 999  DLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIY 1058

Query: 562  EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EE+   G+K  V  YN      + +G S +   + +KM   G
Sbjct: 1059 EELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGG 1100



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 186/460 (40%), Gaps = 63/460 (13%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR-RPAFRFFCWAGDKPGFAHNSR 246
           +DE   L   M  V  E  + +  N ++D L  ++  R   A++ FC   ++   A    
Sbjct: 525 VDEAIKLLSEMSKVQCEPDV-IVINSLIDTL--YKAGRVEEAWQMFCRM-EEMNLAPTVV 580

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN +++ LG+  Q +  V + E M   G   +  TF   ++      E   A+ +F  M
Sbjct: 581 TYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKM 640

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                +  V T N ++    +    K A  LF ++K    P+  T   LL G  +   + 
Sbjct: 641 TTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIE 700

Query: 366 EAGRVWNEM-------IDKGFKPDVVAHNIMLEGLLK---IGKR----------SDAIKL 405
           +A R+  +        ID+ F  DV+   +   G  K    G+R          S  I +
Sbjct: 701 DAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPI 760

Query: 406 FEVM-----------------KAKGPSPNVRSYTIMIWKF-------------------- 428
            +V+                 K  G  P ++ Y ++I  F                    
Sbjct: 761 IKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAG 820

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C  +   Y  LI   G   +++ ++DL  EM  RGC P+ +TYN +I  +      D+A+
Sbjct: 821 CAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAM 880

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +Y  +V   F PT  T+  ++    ++G  +   +++D M+  GC P+   Y +L+ G 
Sbjct: 881 DLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGY 940

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
                   A ++ + M+++G++  +  Y      L  AGR
Sbjct: 941 GKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGR 980



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 145/327 (44%), Gaps = 17/327 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+A +  T+  +++ L +A +      +L+ M ++G+L ++ T+   ++    A     A
Sbjct: 364 GYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDA 423

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F  M     +    T   L++  G+S  P +A   F+K+K R   PN+      L  
Sbjct: 424 LDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYS 483

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +  L EA  ++NE+   G  PD V +N+M++   K+G+  +AIKL   M      P+
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPD 543

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V                V   LI       R++  + +   MEE    P  +TYN L+  
Sbjct: 544 V---------------IVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAG 588

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    +AV++++ M   G  P   T+N ++    +    ++  K++ +M    C PD
Sbjct: 589 LGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPD 648

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEM 564
             ++  +I G I Q++   A     +M
Sbjct: 649 VLTFNTIIHGFIKQNQIKNAIWLFHQM 675



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 31/376 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA----AAKER 295
           G A +S TYN MM    +  Q +  + +L EM +   +  E   I +N+       A   
Sbjct: 504 GLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK---VQCEPDVIVINSLIDTLYKAGRV 560

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
           ++A  +F  M +      V T N LL  LG+    ++A  LF+ +  H  +PN  T+  L
Sbjct: 561 EEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTL 620

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L   C+   +  A +++ +M     +PDV+  N ++ G +K  +  +AI LF  MK K  
Sbjct: 621 LDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMK-KLL 679

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLIT-------GFGNRRRM--DIVYDLLKE------- 458
            P+  +   ++    K         IT       G    R    D++  +L E       
Sbjct: 680 RPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAI 739

Query: 459 -----MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKS 512
                +  R    D      +IK++   K    A  ++ +  +  G KPT+  YN+++  
Sbjct: 740 LFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDG 799

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + +  N E+   +++EM   GC PD  +Y  LI       +  E +   +EML +G K  
Sbjct: 800 FLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPN 859

Query: 573 VLDYNKFAADLSRAGR 588
            + YN   ++L ++ R
Sbjct: 860 TITYNMVISNLVKSNR 875



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 151/363 (41%), Gaps = 22/363 (6%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           D  G   +  TY  ++  L  AR+ +  + +  +M        + T+   ++ F+     
Sbjct: 291 DDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHL 350

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            K   I+  M    +   V T   L+  L ++    EA  L D + K    PNL TY  L
Sbjct: 351 DKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTL 410

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G  R   L +A  +++ M   G +P    + ++++   K G    A++ FE MKA+G 
Sbjct: 411 ISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGI 470

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
           +PN+ +    ++   +                     ++  Y  ++  +    ++D    
Sbjct: 471 APNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIK 530

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LL EM +  C PD +  N+LI  +      +EA +++  M      PT+ TYN+++    
Sbjct: 531 LLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLG 590

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +   ++++ M   GC P+  ++  L+  L   D    A K   +M     +  VL
Sbjct: 591 KEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVL 650

Query: 575 DYN 577
            +N
Sbjct: 651 TFN 653



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 115/290 (39%), Gaps = 51/290 (17%)

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           +T N +LE L   +  ++   +FD ++ +    N+ TY ++         L +A     +
Sbjct: 125 ETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEK 184

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M + GF  +  ++N ++  LL+ G   +A++++  M ++G  P++++++           
Sbjct: 185 MREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFS----------- 233

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                L+   G RR +  V  LL+EME  G                              
Sbjct: 234 ----ALMVASGKRRNIKTVMGLLEEMESMG------------------------------ 259

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
                 +P I+TY + ++   + G  +   ++   M   GC PD  +YTVLI  L +  +
Sbjct: 260 -----LRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARK 314

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +A     +M     K   + Y       S  G    ++++  +M   G
Sbjct: 315 LDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADG 364


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 21/290 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   ++          A A+     K  F   V T N L+  L +     EA   F ++
Sbjct: 134 TYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 193

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
               + P L ++  ++ G CR + L +A  V+NEMID+ F P++V ++++++GL K  + 
Sbjct: 194 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 253

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A +L + M ++G               C+ +   YT L+ GF    R+D    LL+ M
Sbjct: 254 DEAQQLLDRMVSEG---------------CRPDLVAYTPLVLGFSAAGRLDSALGLLRRM 298

Query: 460 EERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             +GC PD +TY  +I KL K+ ++ D+A  I++E+V +   P + TY+ ++  Y +   
Sbjct: 299 VSQGCIPDVVTYTVVIDKLCKVGRV-DDAHEIFRELVANKCSPNVVTYSALIGGYCRASR 357

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            + G KV  EM    C P+  +Y  +I GL   DR+ EAY    EM E G
Sbjct: 358 VDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECG 404



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 28/300 (9%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMN 287
           FR    AG   G   N+ TYN+++  L +  + +   +++ E  ++     + T+   M 
Sbjct: 119 FRKMVAAG---GCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMA 175

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
           A        +A+A F  M +  +   + + N ++  L R++   +A  +F+++  R F P
Sbjct: 176 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 235

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL TY+V++ G C+   L EA ++ + M+ +G +PD+VA+  ++ G    G+   A+ L 
Sbjct: 236 NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLL 295

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
             M ++G  P+V +YT++I K CK                     N   Y+ LI G+   
Sbjct: 296 RRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRA 355

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R+D   +  K M E  C P+ +TYN +I  + +    +EA  +++EM   GF P   TY
Sbjct: 356 SRVD---EGGKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 412



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 151/370 (40%), Gaps = 27/370 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           +S TYN ++     A   +   S+L EM  +G+   + T  I +          +A+  F
Sbjct: 24  SSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHF 83

Query: 303 EL-MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWC 359
           +  +     +  V +   L+  L +      A  LF K+       PN  TY  L+ G C
Sbjct: 84  DASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLC 143

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +   L  A  V  E   + F PDVV +N ++  L ++G+  +A+  F  M  +G  P + 
Sbjct: 144 KQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLV 203

Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           S+  +I   C+                     N   Y+ +I G     ++D    LL  M
Sbjct: 204 SFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRM 263

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              GC PD + Y  L+         D A+ + + MV  G  P + TY +++    + G  
Sbjct: 264 VSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRV 323

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +   +++ E++   C P+  +Y+ LIGG     R  E  K + EM     +  V+ YN  
Sbjct: 324 DDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTM 380

Query: 580 AADLSRAGRS 589
              LS   R+
Sbjct: 381 IWGLSMVDRN 390



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 132/279 (47%), Gaps = 22/279 (7%)

Query: 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           +A  LF +   +   +  TY VL+ G+C   +L  A  +  EM  +G + +    +I+L+
Sbjct: 9   QALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQ 68

Query: 392 GLLKIGKRSDAIKLFEV-MKAKGPSPNVRSYTIMIWKFCK-------------------- 430
           GL + G+ + A++ F+  ++     P+V SYT +I   CK                    
Sbjct: 69  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGC 128

Query: 431 -QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             NA  Y  L+ G   + R+D    ++ E  +R   PD +TYN L+  +      DEA+ 
Sbjct: 129 RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALA 188

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            + +M   G+ PT+ ++N I+    +        +V++EMI R   P+  +Y+V+I GL 
Sbjct: 189 TFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC 248

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             D+  EA + L+ M+ +G +  ++ Y       S AGR
Sbjct: 249 KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 287



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 185/422 (43%), Gaps = 47/422 (11%)

Query: 96  PCLLPHSSSLHS-LQKVLLNKSTNVVASSL----------TNHNLATNILDSNCVNYRNV 144
           PC LP SS  ++ L +   N S    A SL           N    + IL   C   R  
Sbjct: 18  PCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVA 77

Query: 145 SSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKV--IDELFSLDRNMEAVL 202
            ++    +  D   +  +++ ++  VSY +      I  +CK+  +D  F L R M A  
Sbjct: 78  QAL----EHFDASLELAHAQPDV--VSYTTL-----INGLCKLGRVDAAFDLFRKMVAA- 125

Query: 203 DECGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF 261
             C  N  ++N +VD L   +  R  A R       K  FA +  TYN++M+ L +  + 
Sbjct: 126 GGCRPNAFTYNALVDGL--CKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRV 183

Query: 262 ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           +  ++   +M E+G + ++ +F   +     A+    A+ +F  M    F   + T + +
Sbjct: 184 DEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 243

Query: 321 LENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           ++ L +S    EAQ L D++      P+L  YT L+ G+     L  A  +   M+ +G 
Sbjct: 244 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 303

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
            PDVV + ++++ L K+G+  DA ++F  + A   SPNV +Y+ +I  +C+         
Sbjct: 304 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 363

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    N   Y  +I G     R +  Y + +EM E G  PD  TY  L + +++  
Sbjct: 364 VMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMID 423

Query: 483 MP 484
            P
Sbjct: 424 QP 425


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + + ++++ ++S+ ++M   G+ + + TF I +N F    +   A++I   M 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    TI  L+    R     +A  L DK+    + P++  Y  ++   C+ K + 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A   + E+  KG +P+VV +  ++ GL    + SDA +L   M  K  +PNV +Y+ ++
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K                     +   Y+ LI G     R+D    +   M  +GC 
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 327

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D ++YN LI      K  ++ +++++EM + G      TYN +++ +FQ G+ +  ++ 
Sbjct: 328 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M   G  PD  +Y +L+GGL       +A    E+M ++ M   ++ Y      + +
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447

Query: 586 AGR 588
            G+
Sbjct: 448 TGK 450



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 178/386 (46%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  ++  T+N +++      Q    +S+L +M + G      T    +N F        A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V++ + M +  +K  +   N ++++L ++K   +A   F +++ +   PN+ TYT L+ G
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI K   P+V+ ++ +L+  +K GK  +A +LFE M      P+
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+                    +M+ K C  +   Y  LI GF   +R++    L +
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TYN LI+        D+A   + +M   G  P I TYN+++      G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    ++++M +R    D  +YT +I G+    +  EA+     +  KG+K  ++ Y 
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYT 474

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              + L   G  + ++ L  KM+  G
Sbjct: 475 TMMSGLCTKGLLHEVEALYTKMKQEG 500



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 162/354 (45%), Gaps = 22/354 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G+  +  T  S+++   R  +    VS++++M E G    +  +   +++    K   
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A   F+ + +   +  V T   L+  L   S+    A+LL D +K + TPN+ TY+ LL
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   ++EA  ++ EM+     PD+V ++ ++ GL    +  +A ++F++M +KG  
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 327

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
            +V SY  +I  FCK                     N   Y  LI GF     +D   + 
Sbjct: 328 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M+  G  PD  TYN L+  +      ++A+ I+++M +      I TY  +++   +
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           TG  E    ++  +  +G  PD  +YT ++ GL ++    E      +M ++G+
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++++M+     P +V  N +L  ++K+ K    I L + M+  G   ++ ++ I
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC        C         ++ +   +L +M + G  PD +T  +L+     +  
Sbjct: 126 VINCFC-------CCF--------QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             +AV +  +MV  G+KP I  YN I+ S  +T         + E+ R+G  P+  +YT 
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           L+ GL +  R  +A + L +M++K +   V+ Y+       + G+     EL ++M
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  +YN++++   +A++ E  + +  EM ++GL+S   T+   +  F  A +  KA
Sbjct: 325 GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 384

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F  M+ +     + T N LL  L  +   ++A ++F+ ++ R    ++ TYT ++ G
Sbjct: 385 QEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 444

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA  ++  +  KG KPD+V +  M+ GL   G   +   L+  MK +G   N
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 66/141 (46%)

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +++   DL  +M +    P  + +N L+  +   K  D  + + K+M   G +  ++T+N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  +       +   +  +M++ G  PD  +   L+ G   ++R  +A   +++M+E 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 568 GMKAPVLDYNKFAADLSRAGR 588
           G K  ++ YN     L +  R
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKR 205


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 168/367 (45%), Gaps = 25/367 (6%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEE-MGEKGL---LSMETFKIAMNAFAAAKERKKAVAI 301
           +++NS+++++ +   F   +      +G KG+    ++ TF + + A         A+ +
Sbjct: 162 KSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQV 221

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCR 360
           F  M   K +  V T   L++ L ++    EA  L D+++     P+  T+ VL+ G C+
Sbjct: 222 FRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCK 281

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             +L  A ++ + M  KG  P+ V +N ++ GL   GK   AI L + M +    PNV +
Sbjct: 282 KGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVT 341

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y  +I    KQ                    N  VY+ LI+G     +      L KEM 
Sbjct: 342 YGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMT 401

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G   + + Y+A+I  +     PD+AV +  EM   G  P  +T + +MK +F+ GN  
Sbjct: 402 VKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSH 461

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              +VW +M +     ++  Y+VLI GL    +  EA     +ML KG K  V+ Y+   
Sbjct: 462 RAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMI 521

Query: 581 ADLSRAG 587
             LS AG
Sbjct: 522 NGLSIAG 528



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 178/381 (46%), Gaps = 25/381 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+ S+++       F+++  +L+ M  EK ++  + F +   A+  A   +KAV +F+ M
Sbjct: 92  TFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDRM 151

Query: 306 N-KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL----KHRFTPNLTTYTVLLGGWCR 360
             +++ K    + N +L  + +  L   A   ++ +        +PN+ T+ +++   C+
Sbjct: 152 ACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCK 211

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           V  + +A +V+ +M  +  +PDV  +  +++GL K  +  +A+ L + M+  G  P+  +
Sbjct: 212 VGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVT 271

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           + ++I   CK+            G+  R      L+  M  +GC P+ +TYN LI  + +
Sbjct: 272 FNVLINGLCKK------------GDLSR---AAKLVDNMFLKGCIPNEVTYNTLIHGLCL 316

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           +   ++A+ +   MV S   P + TY  I+    + G    G  V   M  RG C ++  
Sbjct: 317 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYV 376

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDELA 596
           Y+ LI GL  + +S EA    +EM  KG +   + Y+     L R G+      VL E+ 
Sbjct: 377 YSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMT 436

Query: 597 QKMRFSGKFEVSNVLARWAET 617
            K      +  S+++  + E 
Sbjct: 437 NKGCTPNAYTCSSLMKGFFEA 457



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 171/385 (44%), Gaps = 62/385 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY ++M  L +A + +  VS+L+EM   G   S  TF + +N      +  +A  + + M
Sbjct: 236 TYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNM 295

Query: 306 NKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR---- 360
                     T N L+  L  + KL K   LL   +  +  PN+ TY  ++ G  +    
Sbjct: 296 FLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRA 355

Query: 361 -----VKNLME--------------------------AGRVWNEMIDKGFKPDVVAHNIM 389
                V  LME                          A  ++ EM  KG++ + + ++ +
Sbjct: 356 LDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAV 415

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT---------------IMIWK------F 428
           ++GL + GK  DA+++   M  KG +PN  + +               + +WK      F
Sbjct: 416 IDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF 475

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
             QN   Y+ LI G     ++     +  +M  +GC PD + Y+++I  + I  + ++A+
Sbjct: 476 -TQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAM 534

Query: 489 RIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           ++Y EM+  G   +P + TYN+++ +  +  +      + + M+ RGC PD  + T+ + 
Sbjct: 535 QLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLR 594

Query: 547 GLISQ-DRSGEAYKYLEEMLEKGMK 570
            L  + D   +  ++L+E++ + +K
Sbjct: 595 MLREKLDPPQDGREFLDELVVRLLK 619



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 23/256 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  N   Y++++S L +  + +  + + +EM  KG  L+   +   ++      +   A
Sbjct: 369 GYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDA 428

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL---GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           V +   M          T + L++     G S   +  ++  D  KH FT N   Y+VL+
Sbjct: 429 VEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSH--RAVEVWKDMAKHNFTQNEVCYSVLI 486

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP- 414
            G C+   + EA  VW +M+ KG KPDVVA++ M+ GL   G   DA++L+  M  +GP 
Sbjct: 487 HGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPD 546

Query: 415 -SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V +Y I++   CKQ++               +    DLL  M +RGC PD +T   
Sbjct: 547 SQPDVVTYNILLNTLCKQSS---------------ISRAIDLLNSMLDRGCDPDLVTCTI 591

Query: 474 LIKLMKIQKMPDEAVR 489
            +++++ +  P +  R
Sbjct: 592 FLRMLREKLDPPQDGR 607


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 175/419 (41%), Gaps = 53/419 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   NS TY+++++ L    + E  + MLEEM +KG+  ++  + I + +   A    
Sbjct: 265 KDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSC 324

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +AV +   M K      V T   L+  L R    + A  ++ K L     P   TY+ L+
Sbjct: 325 EAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALI 384

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
                      A  ++  M+     P+   +N++++G   IG    A  +F+ M   GPS
Sbjct: 385 NQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPS 444

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y I+I  + KQ                    +   Y  LI+GF    +++  + L
Sbjct: 445 PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSL 504

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM E G  P+ +TYNA+I         D+A+ ++ +MV SG  P+  TYNM++  + +
Sbjct: 505 FNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSK 564

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM----------- 564
           T           +M+++G  P+  +YT  I GL    R+  A+K   EM           
Sbjct: 565 TNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCT 624

Query: 565 --------------------LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                               L+ G +  V  Y      L   GR Y  D+L + M+  G
Sbjct: 625 YSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKG 683



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 189/479 (39%), Gaps = 75/479 (15%)

Query: 168 TSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP 227
           + +S  S  DP   E V K+   L S      + L      L  + VV++L+   +    
Sbjct: 36  SPLSISSNTDPFP-ELVSKISIILSSPTWERSSELSHLIPKLKPHHVVNLLDTHNNTES- 93

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM- 286
             RFF W      F H+   + SM++ L R R F               +  +  +I M 
Sbjct: 94  VLRFFHWVSRTHFFKHDMSCFVSMLNRLVRDRLF---------------VPADNVRILMI 138

Query: 287 NAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRF 344
            +     E K+ + +  E+   Y F   + + + LL  LG+  +    + ++ + L    
Sbjct: 139 KSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGI 198

Query: 345 TPNLTT-----------------------------------YTVLLGGWCRVKNLMEAGR 369
            PNL T                                   YT L+ G C+  NL  A  
Sbjct: 199 RPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFE 258

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +++ M+  G  P+ V ++ ++ GL   G+  +A+ + E M  KG  P V +YTI I   C
Sbjct: 259 MFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLC 318

Query: 430 KQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                                 N   YT LI+G     + ++   +  +M   G  P  +
Sbjct: 319 DAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAV 378

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           TY+ALI  + ++   + A+ I++ M+     P   TYN+I+K +   G  +    ++D+M
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++ G  P+  +Y ++I     Q     A + LE M   G+K     Y    +  SR G+
Sbjct: 439 LKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGK 497



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 174/380 (45%), Gaps = 18/380 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G + N  TYN ++ I  +       + +LE M   GL L   T+   ++ F+   + +
Sbjct: 440 KAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLE 499

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A ++F  M ++     V T N ++   L  +K+     L +  ++    P+  TY +++
Sbjct: 500 HAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMI 559

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+ +   + EA     +M+ +G  P+V+ +   ++GL K G+ S A K+F  MK +   
Sbjct: 560 SGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYF 619

Query: 416 PNVRSYTIMIWKFCKQ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           PN+ +Y+ +I   C++                N   YT L+ G   + R      L++ M
Sbjct: 620 PNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESM 679

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +++G  P    Y AL+         + A++I+  MV +GF+P +  Y  ++ +  +    
Sbjct: 680 KKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFR 739

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +  + ++  M+++    D+  +TVL+ GL+ +  +  + + L  M  +            
Sbjct: 740 QKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVML 799

Query: 580 AADLSRAGRSYVLDELAQKM 599
           A +LS  G S  + ++++++
Sbjct: 800 ARELSALGCSIEIPQISKQL 819



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%)

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           D+  EM   G  P+  T+NA+IK++  +    EA  I   +   G  P   TY  ++  +
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGH 247

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + GN ++  +++D M++ GC P+  +Y+ LI GL S+ R  EA   LEEM++KG++  V
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             Y      L  AGRS    +L  KM+  G
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRG 337



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 24/252 (9%)

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAA 292
           W   + G   +S TYN M+S   +  +     +   +M ++GLL ++ T+   ++     
Sbjct: 541 WKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKN 600

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT 352
                A  IF  M K  +   + T + L++ L +    ++A+ L D       PN+ TYT
Sbjct: 601 GRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD---GCEPNVDTYT 657

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G C      EA ++   M  KG +P    +  +L G  K  +   A+K+F+ M   
Sbjct: 658 TLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTT 717

Query: 413 GPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIV 452
           G  P +  Y  +I   CK N                      V+T L+ G       D+ 
Sbjct: 718 GFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLS 777

Query: 453 YDLLKEMEERGC 464
            +LL  ME R C
Sbjct: 778 LELLHVMESRNC 789



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 19/222 (8%)

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           M   G  PN+ ++  MI   C +       LI G                +   G  PD 
Sbjct: 193 MLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMG---------------HIFHYGACPDT 237

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
            TY +LI         D A  ++  MV+ G  P   TY+ ++      G  E    + +E
Sbjct: 238 FTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEE 297

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           MI +G  P  ++YT+ I  L    RS EA K L +M ++G    V  Y    + LSR G+
Sbjct: 298 MIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGK 357

Query: 589 SYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRIET 630
             V   +  KM   G    +   +       N++Y + R ET
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALI----NQLYVEGRFET 395


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 163/352 (46%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF    + YN +++   +         +  E+ ++GL  +  +F   +N    ++   + 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M + +    V T + L+  L +      A+ LFD+++ R   PN  T+T L+ G
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR + +  A   +++M+  G KPD+V +N +L GL K+G  + A KL + M+  G  P+
Sbjct: 338 QCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPD 397

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT +I  +CK+                 ++   ++ K M E G   D + + ALI  
Sbjct: 398 KITYTTLIDGYCKEG---------------DLESAMEIRKGMNEEGVVLDNVAFTALISG 442

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   +A R  +EMV +G KP   TY M++  Y + GN +MG K+  EM   G  P 
Sbjct: 443 FCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPG 502

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +Y VL+ GL  Q +   A   LE ML  G+    + YN       + G++
Sbjct: 503 VITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKA 554



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 44/379 (11%)

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFE--------------------TMVSMLEEMGE 273
           W    P F H S++Y +M + L   + F+                       ++L+  G 
Sbjct: 90  WLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGT 149

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           +   S   F   M A+  +     A+  F L+    F+        LL+ +  S  P   
Sbjct: 150 R--CSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTI 207

Query: 334 QLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
              + + L++ F P +  Y +L+  +C+  ++ +A  ++NE+  +G +P  V+ N ++ G
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L K     +  +L + M+     P+V +Y+++I   CK+                R+D+ 
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEG---------------RLDVA 312

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L  EM++RG  P+G+T+ ALI      +  D A+  Y +M+  G KP +  YN ++  
Sbjct: 313 EQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G+    RK+ DEM   G  PD  +YT LI G   +     A +  + M E+G+   
Sbjct: 373 LCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV--- 429

Query: 573 VLDYNKFAADLS---RAGR 588
           VLD   F A +S   R GR
Sbjct: 430 VLDNVAFTALISGFCRDGR 448



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P V+ Y I+I KFCK+            G+ R   ++++   E+ +RG  P  +++N
Sbjct: 218 GFPPKVQYYNILINKFCKE------------GSIRDAKLIFN---EIRKRGLRPTTVSFN 262

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +   +  DE  R+ K M  +   P + TY++++    + G  ++  +++DEM +R
Sbjct: 263 TLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR 322

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  P+  ++T LI G     R   A     +ML  G+K  ++ YN     L + G     
Sbjct: 323 GLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKA 382

Query: 593 DELAQKMRFSG 603
            +L  +MR  G
Sbjct: 383 RKLVDEMRMVG 393



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 103/230 (44%), Gaps = 20/230 (8%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           YN++++ L +         +++EM   G+   + T+   ++ +    + + A+ I + MN
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMN 425

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           +            L+    R    ++A+  L + ++    P+  TYT+++ G+C+  N+ 
Sbjct: 426 EEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVK 485

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              ++  EM   G KP V+ +N+++ GL K G+  +A  L E M   G +P+  +Y I++
Sbjct: 486 MGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILL 545

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
              CK   A                   DLLK   E+G   D   Y +L+
Sbjct: 546 EGHCKNGKA------------------EDLLKLRNEKGLIVDYAYYTSLV 577


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 154/342 (45%), Gaps = 17/342 (4%)

Query: 260 QFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           QF   + +   M E + L S+  F   +N  A  K+    + + + +        + T N
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111

Query: 319 CLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+    +S  P  A     K+ K  F P++ T+T L+ G+C    + EA  + N+M++ 
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G KPDVV +  +++ L K G  + A+ LF+ M+  G  P+V                +YT
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDV---------------VMYT 216

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+ G  N  R      LL+ M +R   PD +T+NALI     +    +A  +Y EM+R 
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRM 276

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
              P I TY  ++  +   G  +  R+++  M  +GC PD  +YT LI G     +  +A
Sbjct: 277 SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDA 336

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            K   EM +KG+    + Y        + G+  V  E+   M
Sbjct: 337 MKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHM 378



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 175/391 (44%), Gaps = 25/391 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GF  +  T+ S+++      + E  +SM+ +M E G+   +  +   +++        
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVN 194

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLL 355
            A+++F+ M  Y  +  V     L+  L  S   ++A  LL    K +  P++ T+  L+
Sbjct: 195 YALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALI 254

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +    ++A  ++NEMI     P++  +  ++ G    G   +A ++F +M+ KG  
Sbjct: 255 DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCF 314

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
           P+V +YT +I  FCK                     N   YT LI GFG   + ++  ++
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR---SGFKPTIHTYNMIMKS 512
              M  RG PP+  TYN L+  +       +A+ I+++M +    G  P I TYN+++  
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHG 434

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
               G  E    V+++M +R       +YT++I G+    +   A      +  KG+K  
Sbjct: 435 LCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPN 494

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           V+ Y    + L R G  +    L +KM+  G
Sbjct: 495 VVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 20/354 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G +H+  T N +M+   ++ Q     S L +M + G    + TF   +N F      ++A
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           +++   M +   K  V     ++++L ++     A  LFD+++ +   P++  YT L+ G
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A  +   M  +  KPDV+  N +++  +K GK  DA +L+  M     +PN
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +YT +I  FC +                  D    +   ME +GC PD + Y +LI  
Sbjct: 282 IFTYTSLINGFCMEGCV---------------DEARQMFYLMETKGCFPDVVAYTSLING 326

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               K  D+A++I+ EM + G      TY  +++ + Q G   + ++V+  M+ RG  P+
Sbjct: 327 FCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPN 386

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK--AP-VLDYNKFAADLSRAGR 588
             +Y VL+  L    +  +A    E+M ++ M   AP +  YN     L   G+
Sbjct: 387 IRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGK 440



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 139/290 (47%), Gaps = 13/290 (4%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           TF   ++AF    +   A  ++  M +      + T   L+          EA+ +F  +
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308

Query: 341 KHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           + +   P++  YT L+ G+C+ K + +A +++ EM  KG   + + +  +++G  ++GK 
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           + A ++F  M ++G  PN+R+Y +++   C              G  ++  ++++ +++ 
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYN------------GKVKKALMIFEDMQKR 416

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           E  G  P+  TYN L+  +      ++A+ ++++M +      I TY +I++   + G  
Sbjct: 417 EMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKV 476

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    ++  +  +G  P+  +YT +I GL  +    EA+    +M E G+
Sbjct: 477 KNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N+ TY +++   G+  +      +   M  +G+  ++ T+ + ++      + K
Sbjct: 345 QKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVK 404

Query: 297 KAVAIFELMNKYKFKA---GVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
           KA+ IFE M K +       + T N LL  L  +   ++A ++F+ ++ R     + TYT
Sbjct: 405 KALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYT 464

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +++ G C+   +  A  ++  +  KG KP+VV +  M+ GL + G + +A  LF  MK  
Sbjct: 465 IIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKED 524

Query: 413 GPS 415
           G S
Sbjct: 525 GVS 527


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 160/367 (43%), Gaps = 54/367 (14%)

Query: 268 LEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           LEE G      ME   +A  A  AA+    AV  F  M  Y  K      + ++ +L + 
Sbjct: 139 LEEFGHSPEPYMEMIDLAGKAGLAAE----AVHAFNRMEDYGCKPDKIAFSVVISSLSKK 194

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           +   EAQ  FD LK RF P++  YT L+ GWCR  N+ EA RV+ EM   G +P+V  ++
Sbjct: 195 RRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYS 254

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           I+++ L + G+ + A  +F  M   G               C  NA  +  L+       
Sbjct: 255 IVIDALCRSGQITRAHDVFSEMIDVG---------------CDPNAITFNNLMRVHVKAG 299

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALI-------------KLMK--------------- 479
           R + V  +  +M+  GCPPD +TYN LI             K++                
Sbjct: 300 RTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNP 359

Query: 480 ----IQKMPD--EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
               I K+ D   A R++ +M     +P   TYN++M+ +    + +M  K+  EM    
Sbjct: 360 IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENE 419

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVL 592
             P+ N+Y VLI           AY + +EM+E+    P L  Y      L +AG+    
Sbjct: 420 IEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKH 479

Query: 593 DELAQKM 599
           +EL +KM
Sbjct: 480 EELVEKM 486



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 148/361 (40%), Gaps = 60/361 (16%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAF 289
           FF WA +   F H+   Y  M+ + G+A      V     M + G    +  F + +++ 
Sbjct: 132 FFNWATNLEEFGHSPEPYMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSL 191

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNL 348
           +  +   +A + F+ + K +F+  V     L+    R+    EA+ +F ++K     PN+
Sbjct: 192 SKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNV 250

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF----------------------------- 379
            TY++++   CR   +  A  V++EMID G                              
Sbjct: 251 YTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQ 310

Query: 380 ------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM---IWKF-- 428
                  PD + +N ++E   +     +A+K+   +K KG + N  S+  +   I K   
Sbjct: 311 MKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVK-KGCNLNASSFNPIFGCISKLGD 369

Query: 429 ---------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                          C+ N   Y  L+  F +++  D+V  L KEM+E    P+  TY  
Sbjct: 370 VNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRV 429

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           LI         + A   +KEM+     +P++  Y M+++   + G  +   ++ ++M+ R
Sbjct: 430 LISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 489

Query: 533 G 533
           G
Sbjct: 490 G 490



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME+ GC PD + ++ +I  +  ++   EA   +  + +  F+P +  Y  ++  + + GN
Sbjct: 172 MEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGN 230

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                +V+ EM   G  P+  +Y+++I  L    +   A+    EM++ G     + +N 
Sbjct: 231 ISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNN 290

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
                 +AGR+  + ++  +M+  G
Sbjct: 291 LMRVHVKAGRTEKVLQVYNQMKRLG 315


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 32/435 (7%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           ++E+ LDE GI  S  LV  + +R   +       F WA  KPGF  +   ++S+++ L 
Sbjct: 87  SLESALDETGIEPSLQLVQALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVINSLC 146

Query: 257 RARQFETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKY---- 308
           +AR+FE   S++ +    ++G  L+S +TF + +  +A A   ++A+  FE    Y    
Sbjct: 147 KAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVC 206

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDK----LKHRFTPNLTTYTVLLGGWCRVKNL 364
           K  + +  +  LL+ L +    +EA +  ++    +   + P++  + +LL GW R + L
Sbjct: 207 KSASELKLLEVLLDALCKEGYVREASVYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKL 266

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------------ 412
            +A ++W EM     KP VV +  ++EG  ++ +   A+++ E MK              
Sbjct: 267 KQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPI 326

Query: 413 ----GPSPNVRSYTIMIWKF--CKQNAAV--YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
               G +  +     M+ +F  C+    +  Y  L+  F     +     +LK M  RG 
Sbjct: 327 IDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGV 386

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P   TYN   K        +E + +Y +++ +G  P   TY++I+K   + G   +  +
Sbjct: 387 EPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQ 446

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  EM  RG  PD  + T+L+  L   D   EA++  +  + +G+    + +      L 
Sbjct: 447 VNKEMKNRGIDPDLLTTTMLMHLLCRLDMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLR 506

Query: 585 RAGRSYVLDELAQKM 599
             G + +   L+  M
Sbjct: 507 SKGMTDMAKRLSSLM 521


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 114/514 (22%), Positives = 205/514 (39%), Gaps = 96/514 (18%)

Query: 170 VSYKSTADPRE-IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP- 227
           +S     DP   + ++  ++D   +++ N+++   +  + LS N V  VL+      +P 
Sbjct: 72  ISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPE 131

Query: 228 -AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--------- 277
            A RFF WAG +  + H    + S++ +L  +     +  +  E+ ++GLL         
Sbjct: 132 VAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSL 191

Query: 278 ---------------------------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
                                      S+ T+   +N    +   + A  +FE+M+  K 
Sbjct: 192 IKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKI 251

Query: 311 KAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL-------------- 355
                T N +++   ++ KL K  +   D       P+  TY  L+              
Sbjct: 252 VPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLS 311

Query: 356 ---------------------GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
                                GG C+ +  MEA  V+  M  KG + +V  +  +++   
Sbjct: 312 LYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYS 371

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           K G   +A++LFE MK +G  P+  +Y++++   CK                     NA 
Sbjct: 372 KNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAM 431

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  LI G G   R++   +L +EM E+GC  D   YNA+I  +      D+A+ ++  M
Sbjct: 432 FYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRM 491

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G   T++T+ +++   F+    E   K WD+MI +G  P   S+  L  GL    + 
Sbjct: 492 EEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKV 551

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             A K L+++   G+  P   +      L +A R
Sbjct: 552 ARACKILDDLAPMGI-IPETAFEDMINTLCKAQR 584



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 18/351 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++      R F+T +S+  EM E+GL +   ++ + +      ++  +A A+FE M
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           N+   +A V     L+++  ++   +EA  LF+++K+  F P+  TY+VL+ G C+   L
Sbjct: 352 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 411

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +   +++   +KG   + + +  +++GL K G+  DA  LFE M  KG           
Sbjct: 412 DDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKG----------- 460

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
               C +++  Y  +I       ++D    L   MEE GC     T+  LI  +  +   
Sbjct: 461 ----CARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKN 516

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +EA++ + +M+  G  PT+ ++  +       G      K+ D++   G  P + ++  +
Sbjct: 517 EEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIP-ETAFEDM 575

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           I  L    R  EA K  + ++++G + P          L +AG S ++ +L
Sbjct: 576 INTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKL 626


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 173/366 (47%), Gaps = 35/366 (9%)

Query: 217 VLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           VL+  R  + PA   RFF W  +K GF+H  +++  M+  LGRAR      + L  + ++
Sbjct: 74  VLQTLRLIKVPADGLRFFDWVYNK-GFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKR 132

Query: 275 --GLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
             G + ++   F   + ++  A   +++V +F+ M K      V T N LL  L +    
Sbjct: 133 SNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRT 192

Query: 331 KEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             A  +FD+++  +  TP+  T+  L+ G+C+   + +A  ++ EM      PDVV +N 
Sbjct: 193 GMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNT 252

Query: 389 MLEGLLKIGKRSDAIKLFEVM--KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           +++GL + GK   A  L   M  KA    PN+ SYT ++  +C                +
Sbjct: 253 IIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCM---------------K 297

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-----FKP 501
           + +D    +  EM  RG  P+ +TYN LIK +      DE     K  +  G     F P
Sbjct: 298 QEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEI----KGFLIGGDAFTTFSP 353

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              T+N+++K++   G+ +   KV+ EM+     PD  SY+VLI  L  ++   +A    
Sbjct: 354 DACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLF 413

Query: 562 EEMLEK 567
            E+ EK
Sbjct: 414 NELFEK 419



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 179/399 (44%), Gaps = 32/399 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKER 295
           K G + +  T+NS++SIL +  +      M +EM     ++ +  TF   ++ F      
Sbjct: 169 KMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMV 228

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYT 352
            +A  IF+ M  Y     V T N +++ L R+   K A  L + +  + T   PN+ +YT
Sbjct: 229 DQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYT 288

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM--K 410
            LL G+C  + + EA  V++EM+ +G KP+ V +N +++GL +   R D IK F +    
Sbjct: 289 TLLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSE-AHRYDEIKGFLIGGDA 347

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
               SP+  ++ I+I   C                   +D    + +EM      PD  +
Sbjct: 348 FTTFSPDACTFNILIKAHCDAG---------------HLDAAMKVFQEMLNMKLHPDSAS 392

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMV-------RSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           Y+ LI+ + ++   D+A  ++ E+        ++  KP    YN++ +     G  +   
Sbjct: 393 YSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAE 452

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           KV+ ++++RG   D +SY  LI GL  + +   AY+ L  ML +        Y      L
Sbjct: 453 KVFRQLMKRG-AQDPSSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGL 511

Query: 584 SRAGRSYVLDELAQKMRFSGKFEVSNVL-ARWAETTKNR 621
            + G + +  +  Q+M  S    V+    +  AE  K +
Sbjct: 512 LKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELVKRK 550



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           ++   +L+ L  I   +D ++ F+ +  KG S   +S+ +M+                  
Sbjct: 69  LSRTTVLQTLRLIKVPADGLRFFDWVYNKGFSHKEQSFFLML---------------EFL 113

Query: 444 GNRRRMDIVYDLLKEMEER--GCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           G  R ++   + L  +E+R  GC       +N+LI+      +  E+V +++ M + G  
Sbjct: 114 GRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGIS 173

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYK 559
           P++ T+N ++    + G   M   ++DEM R  G  PD  ++  LI G        +A+ 
Sbjct: 174 PSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFT 233

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             +EM        V+ YN     L RAG+  +   L   M
Sbjct: 234 IFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGM 273



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 118/303 (38%), Gaps = 27/303 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS--------METFKIAMNAFAAAKER 295
           +S +Y+ ++  L    +F+   ++  E+ EK +L            + +      A  + 
Sbjct: 389 DSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKA 448

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           K+A  +F  + K +      +   L+  L R  K     +LL   L+  F P+  TY VL
Sbjct: 449 KQAEKVFRQLMK-RGAQDPSSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVL 507

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G  ++   + A      M+   + P     + +L  L+K    +D+  L  VM  K  
Sbjct: 508 IDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELVKRKFANDSFGLLTVMLEKRI 567

Query: 415 SPNV----RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME---------- 460
             N+    ++  ++     K+ A +   L+   G   +M+ + D L E            
Sbjct: 568 RQNIDLSTQAVRLVFSSAQKEKAFLIVRLLYDNGYLIKMEELLDFLCENRKLLDAHTLVL 627

Query: 461 ---ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
              E+    D  T N +I+ +   K   EA  +Y E+V  G    +  + ++  +    G
Sbjct: 628 FCLEKSQMVDIDTCNTIIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLTNALEAAG 687

Query: 518 NYE 520
            +E
Sbjct: 688 KWE 690


>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Vitis vinifera]
          Length = 501

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 168/353 (47%), Gaps = 22/353 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKA 298
           GF H+  +Y++++  L R+R FE + ++L+ +    +   ET  IA+   +  ++  +KA
Sbjct: 117 GFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMPEKA 176

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           V +F+ M  +     + + N LL  L  +    +A  +FD+  K  F  N  ++ +++ G
Sbjct: 177 VELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKG 236

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W       +A +V+ EMIDK  KP VV  N ++  L   G    A+ L E M  K   PN
Sbjct: 237 WLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPN 296

Query: 418 VRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y +++                    ++ CK     +  L++  G R R+D    LL 
Sbjct: 297 AVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLL 356

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ R   PD +TYN LI  +  +    EA ++  EM   G +P   TY M++  + Q  
Sbjct: 357 EMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVE 416

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           ++E G KV   M+  G CP   S+  L+ GL+   +   A   LEEM ++ M+
Sbjct: 417 DFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMR 469



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 2/223 (0%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+NS++  L      +  + +LE+M +K    +  T+ + M    +  + K+A  +   M
Sbjct: 264 TFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDM 323

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           +    K  +     L+ +LGR  ++     LL +  + RF P++ TY +L+   C+    
Sbjct: 324 DYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRA 383

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +EA +V  EM   G +P+   + +M++G  ++      +K+   M   G  P + S+  +
Sbjct: 384 LEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDL 443

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
           +    K       C +     +R+M    +  + + +  CP D
Sbjct: 444 VVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEALVKDACPGD 486



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 24/238 (10%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------QNAA 434
            L  L  +    DA+ LF   +  G   +  SY+ +++K  +              QN  
Sbjct: 93  FLADLKSVQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNIN 152

Query: 435 V------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           +      +  LI  +G  +  +   +L + M    C    +++N L+ ++       +A+
Sbjct: 153 IRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAI 212

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            I+    + GF+    ++N+I+K +   G ++   +V++EMI +   P   ++  LIG L
Sbjct: 213 GIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFL 272

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFE 606
             +     A   LE+M++K  +   + Y      L   G+     + A+KM F   ++
Sbjct: 273 CGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKY----KEAKKMMFDMDYQ 326


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 191/423 (45%), Gaps = 21/423 (4%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ER  +++ ++F    + E  ++   + + H LV  VL+      R   +FF WAG +  F
Sbjct: 63  ERFIRIL-KIFKWGSDAEKAIEVLKLKVDHRLVHQVLD-IDVEIRAKIQFFKWAGKRQHF 120

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
            H+S TY +++  L  +   + M   +++M      +    +   +     AK   KA++
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGW 358
           +F  +   K        N L+  L      ++   L++++  +   +P+  TY+ L+  +
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +++    A R+++EM + G  P    +  +L    K+ K   A++L E MK KG +P V
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +YT                LI G G   R+D  Y L   M + GC PD +  N LI ++
Sbjct: 301 FTYTE---------------LIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINIL 345

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW-DEMIRRGCCPD 537
                 ++A++++ +M      P + TYN ++K+ F++        +W ++M   G  P 
Sbjct: 346 GRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPS 405

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y +LI G    +R  +A   LEEM EKG       Y      L RA R    +EL Q
Sbjct: 406 SFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQ 465

Query: 598 KMR 600
           +++
Sbjct: 466 ELK 468



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 173/392 (44%), Gaps = 28/392 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           ++ TY++++S  G+  +++    + +EM E GL   E  KI     A   +  K  A   
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTE--KIYTTILAMYFKLNKVEAALR 286

Query: 304 LMNKYKFKAGVDTINC---LLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           L+ + K K    T+     L++ LG+  ++     L F+ LK    P++     L+    
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-GKRSDAIKLFEVMKAKGPSPNV 418
           R   L +A +++ +M      P+VV +N +++ + +     S+A   FE MKA G +P+ 
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406

Query: 419 RSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y I+I  FCK N                     A Y  LI   G  +R +   +L +E
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++E         Y  +IK         +AV ++ EM + G  P ++TYN +M    + G 
Sbjct: 467 LKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGM 526

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +    +   M   GC PD  S+ +++ GL        A +   +M E  +    + YN 
Sbjct: 527 IDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNT 586

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
             + LSRAG   +  +L ++M+  G FE  ++
Sbjct: 587 ILSCLSRAGMFEMAAKLMREMKLKG-FEYDSI 617



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 167/383 (43%), Gaps = 28/383 (7%)

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
           LER+  A    FR F    +  G     + Y +++++  +  + E  + ++EEM  KG  
Sbjct: 243 LERYDFA----FRLFDEMKEN-GLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCA 297

Query: 278 -SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
            ++ T+   +           A ++F  M K   K  V  IN L+  LGR+   ++A  L
Sbjct: 298 PTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKL 357

Query: 337 FDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLL 394
           F K+   +  PN+ TY  ++      K       +W E M   G  P    + I+++G  
Sbjct: 358 FGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFC 417

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------WKFCKQN-----AA 434
           K  +   A+ L E M  KG  P   +Y  +I               ++  K+N     A 
Sbjct: 418 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR 477

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           VY  +I  FGN  R+    DL  EM++ GC PD  TYNAL+  M    M DEA  + + M
Sbjct: 478 VYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             +G  P I ++N+I+    +TG  +   +++ +M      PD  SY  ++  L      
Sbjct: 538 RENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMF 597

Query: 555 GEAYKYLEEMLEKGMKAPVLDYN 577
             A K + EM  KG +   + Y+
Sbjct: 598 EMAAKLMREMKLKGFEYDSITYS 620



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 1/175 (0%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           + ++  Y  LI        +D ++  +++M    C      ++ ++K++   KM ++A+ 
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGL 548
           ++ ++      PT   YN ++      G++E   ++++E+   G C PD  +Y+ LI   
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              +R   A++  +EM E G+      Y    A   +  +      L ++M+  G
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKG 295


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 196/475 (41%), Gaps = 60/475 (12%)

Query: 171 SYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFR 230
           + KS    + +  VC+V+D  +     +E  L+         LVV V+ R +  R  A  
Sbjct: 60  ALKSEGMRKTVHDVCRVLDT-YPWGAALEDALNTFDEMPQPELVVGVIRRLKDVR-VALH 117

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA-F 289
           +F W   K    H+   YN+++ ++ R R  E +  +LEEM   G        I M A F
Sbjct: 118 YFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASF 177

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNL 348
             +++ ++A  + E M K+KF+        L+  L  +        L  +++   +   +
Sbjct: 178 VKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTV 237

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
             +T L+  + R   +  A  + +EM    F  D+V +N+ ++   K+GK   A K F  
Sbjct: 238 HLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHE 297

Query: 409 MKAKGPSPNVRSYTIMIWKFCK---------------QNAAV-----YTCLITGFGNRRR 448
           +K++G  P+  ++T MI   CK                N +V     Y  +I G+G+  +
Sbjct: 298 LKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGK 357

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
            +  Y LL+  + +GC P  + YN ++  +  +   +EA+RI + M +    P + +YN+
Sbjct: 358 FNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM-KMDAAPNLTSYNI 416

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRG----------------------------------- 533
           ++    + G  E   KV D M   G                                   
Sbjct: 417 LIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKV 476

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           C PD  ++  LI GL    +  +AY   E+ML+ G     + Y     +  + GR
Sbjct: 477 CTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGR 531



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 208/503 (41%), Gaps = 99/503 (19%)

Query: 198 MEAVLDE---CGINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMM 252
           +E +L+E    G   S+N  ++++  F  +R  R AF        K  F      Y +++
Sbjct: 151 LEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVI-ETMRKFKFRPAYSAYTTLI 209

Query: 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
             L  A + + M+++L +M E G  +++  F   +  FA       A+++ + M    F 
Sbjct: 210 GALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFN 269

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRV 370
           A +   N  ++  G+      A   F +LK +   P+  T+T ++G  C+ + + EA  +
Sbjct: 270 ADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVEL 329

Query: 371 WNEMID-----------------------------------KGFKPDVVAHNIMLEGLLK 395
           + E+                                     KG  P V+A+N +L  L +
Sbjct: 330 FEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGR 389

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------QNAAVYTCLIT 441
            GK  +A+++ E MK    +PN+ SY I+I   CK              + A ++  +IT
Sbjct: 390 KGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIIT 448

Query: 442 ------GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                      +R+D    +   ++ + C PD +T+ +LI  +      ++A  +Y++M+
Sbjct: 449 VNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKML 508

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC--------------------- 534
            SG  P    Y  +++++F+ G  E G K++ EM+ RGC                     
Sbjct: 509 DSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIE 568

Query: 535 --------------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
                          PD  SY++LI GL+    S + YK   EM E+G+      YN   
Sbjct: 569 KGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVI 628

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               ++G+     +L ++M+  G
Sbjct: 629 DGFCKSGKVNKAYQLLEEMKTKG 651



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 23/369 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG----LLSMETFKIAMNAFAAAKER 295
           G   N+  Y S++    +  + E    + +EM  +G    L+ +  +   M+    A E 
Sbjct: 511 GQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNY---MDCVFKAGEI 567

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           +K  A+FE +        V + + L+  L +    K+   LF ++K +    +   Y ++
Sbjct: 568 EKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIV 627

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+   + +A ++  EM  KG +P VV +  +++GL KI +  +A  LFE  K+K  
Sbjct: 628 IDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAV 687

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
             NV                VY+ LI GFG   R+D  Y +L+E+ ++G  P+  T+N L
Sbjct: 688 DLNV---------------VVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCL 732

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +   +  DEA+  ++ M      P   TY++++    +   +      W EM ++G 
Sbjct: 733 LDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGL 792

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  +YT +I GL       EA    E     G       YN     LS A ++     
Sbjct: 793 KPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYI 852

Query: 595 LAQKMRFSG 603
           L ++ R  G
Sbjct: 853 LFEETRLKG 861


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 175/383 (45%), Gaps = 26/383 (6%)

Query: 197 NMEAVLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           N ++ LDE  +++S  LV +VL         +      + A++FF W G +  F H +  
Sbjct: 95  NTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANC 154

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           Y+ +M I     +++ M  +++EM + G  +   TF + +     A   +  V  F    
Sbjct: 155 YHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSK 214

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
            + ++    + N +L +L   K  K    ++++ L+  FTP++ TY +++    R+    
Sbjct: 215 TFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTD 274

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              R+ +EM+  GF PD+  +NI+L  L    K   A+ L   M+  G  P V  +T   
Sbjct: 275 RLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTT-- 332

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        LI G     +++     + E  + GC PD + Y  +I         +
Sbjct: 333 -------------LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELE 379

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A  ++KEM   G  P + TYN +++ +   G ++    +  EM  RGC P+   Y+ L+
Sbjct: 380 KAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLV 439

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
             L +  +  EA++ +++M+EKG
Sbjct: 440 NNLKNAGKVLEAHEVVKDMVEKG 462



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 50/322 (15%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL------SHNLVVDVLERFRHAR- 225
           K  A+  E + +C++IDE+        A    C  NL         L  DV+E+F  ++ 
Sbjct: 160 KIFAECGEYKAMCRLIDEMIKDGYPTTA----CTFNLLICTCGEAGLARDVVEQFIKSKT 215

Query: 226 ---RP----------------AFRFFCWAGDK---PGFAHNSRTYNSMMSILGRARQFET 263
              RP                 ++   W  ++    GF  +  TYN +M    R  + + 
Sbjct: 216 FNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDR 275

Query: 264 MVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
           +  +L+EM + G    + T+ I ++  A   +   A+ +   M +   + GV     L++
Sbjct: 276 LYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLID 335

Query: 323 NLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
            L R+ KL      + + +K   TP++  YTV++ G+     L +A  ++ EM +KG  P
Sbjct: 336 GLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 395

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           +V  +N M+ G    GK  +A  L + M+++G +PN                 VY+ L+ 
Sbjct: 396 NVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNF---------------VVYSTLVN 440

Query: 442 GFGNRRRMDIVYDLLKEMEERG 463
              N  ++   ++++K+M E+G
Sbjct: 441 NLKNAGKVLEAHEVVKDMVEKG 462


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 166/355 (46%), Gaps = 19/355 (5%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           RT+++  S +    + +    M++    + L S+  F   ++  A +K     +++F  M
Sbjct: 39  RTFSTKRSSMNLEEEIDLFCKMIQS---RPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM 95

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + + N ++  L R S+      ++   +K  + P++ T + L+ G+C+   +
Sbjct: 96  EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRV 155

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  + ++M + GF+PDVV +N +++G  KIG  +DA++LF+ M+  G           
Sbjct: 156 FDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG----------- 204

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                + +A  Y  L+ G     R      L+++M  R   P+ +T+ A+I +   +   
Sbjct: 205 ----VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 260

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA+++Y+EM R    P + TYN ++      G  +  +++ D M+ +GC PD  +Y  L
Sbjct: 261 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 320

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           I G     R  E  K   EM ++G+    + YN       +AGR     E+  +M
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM 375



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           ++ ++S + +++ ++ ++S+   M   G+   + ++ I +N          A+++   M 
Sbjct: 72  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 131

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K+ ++  V T++ L+    +     +A  L  K++   F P++  Y  ++ G C++  + 
Sbjct: 132 KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 191

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  +++ M   G + D V +N ++ GL   G+ SDA +L   M  +   PNV ++T +I
Sbjct: 192 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K+                    +   Y  LI G     R+D    +L  M  +GC 
Sbjct: 252 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 311

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN LI      K  DE  ++++EM + G      TYN I++ YFQ G  +  +++
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M  R   P+  +Y++L+ GL    R  +A    E M +  ++  +  YN     + +
Sbjct: 372 FSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCK 428

Query: 586 AG 587
            G
Sbjct: 429 IG 430



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 169/386 (43%), Gaps = 25/386 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  H+  +YN +++ L R  +F   +S++ +M + G    + T    +N F        A
Sbjct: 99  GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + +   M +  F+  V   N +++   +  L  +A  LFD++ +     +  TY  L+ G
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+  +M+ +   P+V+    +++  +K GK S+A+KL+E M  +   P+
Sbjct: 219 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPD 278

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y                     +M+ K C  +   Y  LI GF   +R+D    L +
Sbjct: 279 VFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFR 338

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   D +TYN +I+       PD A  I+  M     +P I TY++++       
Sbjct: 339 EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNW 395

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    +++ M +     D  +Y ++I G+       +A+     +  KG+K  V+ Y 
Sbjct: 396 RVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYT 455

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              +   R  +    D L +KM+  G
Sbjct: 456 TMISGFCRKRQWDKSDLLYRKMQEDG 481



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 146/303 (48%), Gaps = 22/303 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   ++ TYNS+++ L  + ++     ++ +M  + ++ ++ TF   ++ F    + 
Sbjct: 201 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 260

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A+ ++E M +      V T N L+  L       EA+ + D +  +   P++ TY  L
Sbjct: 261 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 320

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+ K + E  +++ EM  +G   D + +N +++G  + G+   A ++F  M ++  
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR-- 378

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            PN+R+Y+I+++  C  N  V   L+              L + M++     D  TYN +
Sbjct: 379 -PNIRTYSILLYGLC-MNWRVEKALV--------------LFENMQKSEIELDITTYNIV 422

Query: 475 IKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           I  M KI  + D A  +++ +   G KP + +Y  ++  + +   ++    ++ +M   G
Sbjct: 423 IHGMCKIGNVED-AWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481

Query: 534 CCP 536
             P
Sbjct: 482 LLP 484


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 175/386 (45%), Gaps = 28/386 (7%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAKERKKAV 299
           A N RTYN +++ L +AR       +L+EM  G+     + T+   +N F    E  +A 
Sbjct: 6   APNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRAC 65

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            I  E++ +      V T   +++ L R  K+ +  +++ +       P+  T++ L+ G
Sbjct: 66  EILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 125

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-- 415
           WC  + + EA +++ E++    + D V+ + ++ GL +  +  +A +LF+ M+ +     
Sbjct: 126 WCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAW 185

Query: 416 -PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+V +YT +I  FCK                     N   Y+ L+ G      +D   D
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 245

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L + M  +GC P+ +TY  LI  +      D A  +  EM  +       +YN ++  Y 
Sbjct: 246 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYC 305

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM-LEKGMKAPV 573
           + G  E  ++++ EM  + C PD  +YT L+ G  +  R  EA   LE M    G+   V
Sbjct: 306 RLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 365

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKM 599
           + Y+   A  SRA R     E  Q+M
Sbjct: 366 VTYSIVVAGYSRAKRFVEAAEFIQEM 391



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 182/407 (44%), Gaps = 57/407 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G A +  TY S++  L R  + +    M+ EM  KG+   + TF   +  +  A++  
Sbjct: 74  RDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVD 133

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR----FTPNLTTYT 352
           +A+ +++ +     +    + + L+  L R +   EA  LF +++ R    + P++ TYT
Sbjct: 134 EALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYT 193

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G+C+  NL +A ++   M  +   P+VV ++ +L GL K G    A+ LF  M +K
Sbjct: 194 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 253

Query: 413 GPSPNVRSYTIMIWKFC---KQNAA-----------------VYTCLITGFGNRRRMDIV 452
           G  PNV +YT +I   C   K +AA                  Y  L+ G+    R++  
Sbjct: 254 GCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEA 313

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGFKPTIHTYNMIMK 511
             L KEM  + C PD +TY  L++        +EA  + + M   +G  P + TY++++ 
Sbjct: 314 KQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVA 373

Query: 512 SYFQTGNYEMGRKVWDEMIRR--------------GCC-----------------PDDNS 540
            Y +   +    +   EMI R              G C                 PD  +
Sbjct: 374 GYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVT 433

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           YT++I GL   DR+ EA   LEEM+ K ++  V  +N     L R G
Sbjct: 434 YTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLG 480



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 173/387 (44%), Gaps = 30/387 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSME--TFKIAMNAFAAAKERKKAV 299
           ++ + +++++ L R R+      + +EM   E G    +  T+   ++ F  +   +KA+
Sbjct: 150 DAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAM 209

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
            +  +M   K    V T + LL  L ++    +A  LF ++  +   PN+ TYT L+ G 
Sbjct: 210 KMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGL 269

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C    +  A  + +EM       D V++N +L+G  ++G+  +A +LF+ M AK   P+ 
Sbjct: 270 CAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDR 329

Query: 419 RSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
            +YT ++  FC                       +   Y+ ++ G+   +R     + ++
Sbjct: 330 ITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ 389

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  R   P+ +TY++LI  +      + A+ + K +     KP + TY ++++    T 
Sbjct: 390 EMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNV----DKPDVVTYTIVIEGLCGTD 445

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    + +EM+ +   P   ++  +IG L       EA+K L  M   G++  ++ Y 
Sbjct: 446 RTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYT 505

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGK 604
                 SR GR  +  EL + MR   K
Sbjct: 506 TLLEGFSRTGRMEIAYELFEVMRRKAK 532



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 157/348 (45%), Gaps = 27/348 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++    ++   E  + ML  M G K + ++ T+   ++    A +  +A+ +F  M
Sbjct: 191 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 250

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGWCRVKNL 364
                   V T   L+  L  +     A+LL D++     P +  +Y  LL G+CR+  +
Sbjct: 251 TSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRI 310

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTI 423
            EA +++ EM  K   PD + +  ++ G     +  +A  L E MK A G  P+V +Y+I
Sbjct: 311 EEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSI 370

Query: 424 --------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
                               MI +    NA  Y+ LI G     R++   ++LK +++  
Sbjct: 371 VVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK-- 428

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +TY  +I+ +      +EA+ + +EMV    +P++ T+N ++ +  + G+ +   
Sbjct: 429 --PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAW 486

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           K+   M   G  P   +YT L+ G     R   AY+  E M  K  K+
Sbjct: 487 KLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKS 534



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 168/374 (44%), Gaps = 30/374 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY+S++  L +A   +  + +   M  KG + ++ T+   ++   AA +   A  + 
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRV 361
           + M      A   + N LL+   R    +EA+ LF ++  +   P+  TYT L+ G+C  
Sbjct: 283 DEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNA 342

Query: 362 KNLMEAGRVWNEM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             L EA  +   M    G  PDVV ++I++ G  +  +  +A +  + M A+  +PN  +
Sbjct: 343 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 421 YTIMIWKFCKQ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           Y+ +I   CK                 +   YT +I G     R +    LL+EM  +  
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRV 462

Query: 465 PPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            P   T+N++I  L ++  M DEA ++   M   G +P + TY  +++ + +TG  E+  
Sbjct: 463 EPSVGTFNSVIGALCRLGDM-DEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 521

Query: 524 KVWDEMIRRG--------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           ++++ M R+           P+  +++ LI GL       +A   +EE+  +  +    D
Sbjct: 522 ELFEVMRRKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEED 580

Query: 576 YNKFAADLSRAGRS 589
                  L RAGR+
Sbjct: 581 CLAIVDGLLRAGRT 594



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 127/325 (39%), Gaps = 48/325 (14%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFEL 304
           TY  ++     A + E    +LE M     +  +  T+ I +  ++ AK   +A    + 
Sbjct: 331 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 390

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           M          T + L++ L ++     A    + LK+   P++ TYT+++ G C     
Sbjct: 391 MIARNVAPNAVTYSSLIDGLCKAGRVNHA---MEVLKNVDKPDVVTYTIVIEGLCGTDRT 447

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  +  EM++K  +P V   N ++  L ++G   +A KL   M A G  P + +YT  
Sbjct: 448 EEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTT- 506

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                         L+ GF    RM+I Y+L + M  +                   K  
Sbjct: 507 --------------LLEGFSRTGRMEIAYELFEVMRRKA------------------KKS 534

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             A  +  E            ++ +++   +    +    V +E+  R C P +     +
Sbjct: 535 SSAANLVPE----------QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAI 584

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGM 569
           + GL+   R+ EA K +  + + G+
Sbjct: 585 VDGLLRAGRTEEAGKLINSISKVGL 609


>gi|226497014|ref|NP_001152455.1| GTP binding protein [Zea mays]
 gi|195656487|gb|ACG47711.1| GTP binding protein [Zea mays]
          Length = 455

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 161/336 (47%), Gaps = 17/336 (5%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           R +  +C+V+ +      ++ A L      L+      VL R R+   P+ RFF +A   
Sbjct: 51  RLVGALCRVLSDFRGPRHDLRAALSGFAPRLTPAAAAAVLRRCRNLPVPSLRFFLFAAAM 110

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           PGF H   +   +   L   R F  + S+L ++  +  LS + F +   A+A A   + A
Sbjct: 111 PGFTHLPDSLLILAGSLAGTRLFPLLRSLLSDL-PRSALSRDLFPLLFRAYARAGLPEDA 169

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F  M ++ F   V  ++ LL  L  + L + A+  F +   +F  +  TYT+L+ GW
Sbjct: 170 IRAFSSMERFCFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPFQFDLSAKTYTILISGW 229

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKAKGPSPN 417
             V + ++A ++++EMI++G +PDV A+N +++ L + G  + A  +L ++ +++G +P+
Sbjct: 230 AVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRGLAPD 289

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y   +   C    A     +               L  M  R   P+  TYNA+I+L
Sbjct: 290 AATYGPFLRSACASKDARAALRV---------------LDRMRARSLTPNVFTYNAVIRL 334

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +      DE+  I  EM   G KP + +YN ++ ++
Sbjct: 335 LCELGEVDESYNILNEMATYGEKPDVWSYNTLLNTH 370



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +A  YT LI+G+           L  EM ERG  PD   YNALI  +        A    
Sbjct: 218 SAKTYTILISGWAVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQL 277

Query: 492 KEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           K+M RS G  P   TY   ++S   + +     +V D M  R   P+  +Y  +I  L  
Sbjct: 278 KDMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCE 337

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                E+Y  L EM   G K  V  YN
Sbjct: 338 LGEVDESYNILNEMATYGEKPDVWSYN 364



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           +P++A+R +  M R  F PT+   + ++ +    G  E     + E   +       +YT
Sbjct: 165 LPEDAIRAFSSMERFCFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPFQFDL-SAKTYT 223

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           +LI G        +A K  +EM+E+G++  V  YN     L R G   +  E  + M+ S
Sbjct: 224 ILISGWAVVASPVKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRS 283


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 172/381 (45%), Gaps = 26/381 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M+++L   G+ ++ +  V  +E  G K   ++ T+   ++ + ++   + A AI  
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKP--NIVTYNTIVHGYCSSGRVEAADAILT 280

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVK 362
            M + K +    T   L+  + +    +EA  +F+++  +   P+   Y  L+ G+C   
Sbjct: 281 TMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKG 340

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           NL  A    +EM+ KG  P +  +N ++  L    +  +A  + + ++ KG SP+  +Y 
Sbjct: 341 NLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN 400

Query: 423 IMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  +C                    K     YT L+     + RM    DL K++   
Sbjct: 401 ILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NALI           A  + K+M R    P   T+N IM+ + + G  E  
Sbjct: 461 GVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEA 520

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R+++DEM RRG  PD  S+  LI G   +    +A++   EML+ G    VL YN     
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQG 580

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L +     + +EL ++M   G
Sbjct: 581 LCKNQEGDLAEELLKEMVSKG 601



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 214/500 (42%), Gaps = 48/500 (9%)

Query: 95  VPCLLPHSSSLH-------SLQKVLLNK--STNVVASSLTNHNLATNILDSNCVNYRNVS 145
           +PC +P  SSL        SLQK  L    ST  +AS LT H L  +   S     + V 
Sbjct: 2   IPCRIPKLSSLKLKPFSSISLQKTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQVE 61

Query: 146 SVTDDNQDSDGECDGNNSESEITSV---SYKSTADPREIERVCKVIDELFSLDRNMEAVL 202
           S    +  S    + + S   +       +   +D R +     ++  L S    +  + 
Sbjct: 62  SSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLK 121

Query: 203 DECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
              G   ++++            R  F F   + D+ GF  +S  ++ ++       + +
Sbjct: 122 QALGGGTTNSI------------REIFEFLAASRDRLGF-KSSIVFDYLIKSCCDMNRAD 168

Query: 263 TMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
                   M EKG+L ++ET    ++ F      + A  ++  M + + K+ V T N ++
Sbjct: 169 EAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMI 228

Query: 322 ENLGRSKLPKEAQLLFDKLKHRFT----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
             L +    K+A+   D + H  T    PN+ TY  ++ G+C    +  A  +   M  +
Sbjct: 229 NVLCKEGKLKKAK---DFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ 285

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
             +PD   +  ++ G+ K G+  +A K+FE M  KG  P+               A +Y 
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS---------------AVIYN 330

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI GF N+  +D+      EM ++G  P   TYN+LI  + +++  DEA  + KE+   
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P   TYN+++  Y +  N +    + DEM+  G  P   +YT L+  L  ++R  EA
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEA 450

Query: 558 YKYLEEMLEKGMKAPVLDYN 577
               +++  +G+   V+ +N
Sbjct: 451 DDLFKKITSEGVLPDVIMFN 470



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 17/328 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           +S TY S++S + +  + E    + EEM +KGL  S   +   ++ F        A A  
Sbjct: 290 DSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYK 349

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M K      + T N L+  L   +   EA+ +  +++ +  +P+  TY +L+ G+CR 
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRC 409

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N  +A  + +EM+  G KP    +  +L  L K  +  +A  LF+ + ++G  P+V   
Sbjct: 410 ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDV--- 466

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                        ++  LI G  +   +   ++LLK+M+    PPD +T+N +++    +
Sbjct: 467 ------------IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCRE 514

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              +EA  ++ EM R G KP   ++N ++  Y + G+ +   +V +EM+  G  P   +Y
Sbjct: 515 GKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTY 574

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             L+ GL        A + L+EM+ KGM
Sbjct: 575 NALVQGLCKNQEGDLAEELLKEMVSKGM 602



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 22/271 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G +    TYNS++  L   ++ +    M++E+ EKG+     T+ I +N +      K
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAK 413

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA  + + M     K    T   LL  L +    KEA  LF K+      P++  +  L+
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALI 473

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C   N+  A  +  +M      PD V  N +++G  + GK  +A +LF+ MK +G  
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533

Query: 416 PNVRSYTIMIWKFCKQ------------------NAAV--YTCLITGFGNRRRMDIVYDL 455
           P+  S+  +I  + ++                  N  V  Y  L+ G    +  D+  +L
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           LKEM  +G  PD  TY  LI+ +    +PDE
Sbjct: 594 LKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 63/159 (39%)

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           G G    +  +++ L    +R      + ++ LIK        DEA   +  M   G  P
Sbjct: 125 GGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
           TI T N ++  + +    E    ++ EM R        ++ ++I  L  + +  +A  ++
Sbjct: 185 TIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV 244

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             M   G+K  ++ YN        +GR    D +   M+
Sbjct: 245 GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 173/418 (41%), Gaps = 40/418 (9%)

Query: 226  RPAFRFFCWAGDKPGFA--HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283
            R A +F  W   +PG    H +  Y     IL +AR +++  S+L  + + G+ S   F 
Sbjct: 842  RLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFG 901

Query: 284  IAMNAFAAAKERKK-----------------AVAIFELMNKYKFKAGVDTINCLLENLGR 326
              M+ +                         AV  FEL+    FK  V T N +L ++ +
Sbjct: 902  ALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVK 961

Query: 327  SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
             K  +    LF ++  +   PN+ T+ +L+ G C   NL +AG +  +M + GF P +V 
Sbjct: 962  DKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVT 1021

Query: 386  HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
            +N +L    K G+   AI+L + M  KG   +V +Y + I   C                
Sbjct: 1022 YNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMR 1081

Query: 432  ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                  N   Y  LI GF    ++ +   +  EM +    P+ +TYNALI         +
Sbjct: 1082 KEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFE 1141

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            EA+R+   M  +G +    TY  ++    +   +E+ +++ + M          +YTVLI
Sbjct: 1142 EALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 1201

Query: 546  GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             GL       EA + +  M + G+   V+ Y+       R G      E+  +M  SG
Sbjct: 1202 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 17/351 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
            G   N  T+N +++ L      +   ++L++M E G + ++ T+   +N +      K A
Sbjct: 979  GICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAA 1038

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            + + + M     +A V T N  ++NL  +    +A LL  K+ K   +PN  TY  L+ G
Sbjct: 1039 IELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLING 1098

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            + +   +  A +V+NEM      P+ V +N ++ G   +G   +A++L + M+A G    
Sbjct: 1099 FVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAG---- 1154

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                        + N   Y  L+ G     + ++   LL+ M         + Y  LI  
Sbjct: 1155 -----------LRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDG 1203

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
            +    M DEAV++   M + G  P + TY+ ++  + + GN +  +++   M R G   +
Sbjct: 1204 LCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLN 1263

Query: 538  DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
               Y+ LI          EA K    M   G  A     N   + L R G+
Sbjct: 1264 KIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGK 1314



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 161/386 (41%), Gaps = 30/386 (7%)

Query: 228  AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
            A +F C    + G   NS TY+ +++  G         S  ++M + G     +F    +
Sbjct: 1318 AEKFLCHM-SRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCG--QHPSFFTYGS 1374

Query: 288  AFAAAKERKKAVAIFELMNKYKFKAG-VDTI--NCLLENLGRSKLPKEAQLLFDKL-KHR 343
                  +    V   + +N+  +  G VD++  N LL    +S    EA  LFDK+ ++ 
Sbjct: 1375 LLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNN 1434

Query: 344  FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDA 402
              P+  TY+ LL G CR    + A  ++   + +G   P+ V +  +++GL K G    A
Sbjct: 1435 VLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAA 1494

Query: 403  IKLFEVMKAKGPSPNVRSYTIMI---------------------WKFCKQNAAVYTCLIT 441
               FE M  KG  P+  ++  +I                     W  C  N A Y  L+ 
Sbjct: 1495 FYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCP-NLATYNILLH 1553

Query: 442  GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            GF  ++ +     L   M   G  PD LT+++LI  +    +PD  V++  +M+  G   
Sbjct: 1554 GFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLA 1613

Query: 502  TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
               T+N+++  Y ++G       + + M   G  PD ++Y  +  GL  +    E+   L
Sbjct: 1614 DQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVL 1673

Query: 562  EEMLEKGMKAPVLDYNKFAADLSRAG 587
             EMLE G+      Y      + R G
Sbjct: 1674 HEMLENGVIPKHAQYITLINGMCRVG 1699



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 17/298 (5%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
            + G   +  T++S++  L ++   +  V +L +M  +G L+ + TF I +N ++ + + +
Sbjct: 1573 REGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMR 1632

Query: 297  KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHRFTPNLTTYTVLL 355
            KA  +   MN        DT N +   L +    +E+ + L + L++   P    Y  L+
Sbjct: 1633 KAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLI 1692

Query: 356  GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             G CRV ++  A ++ +EM   GF    VA + M+ GLL  GK  DA+ + + M      
Sbjct: 1693 NGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLL 1752

Query: 416  PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            P + ++T ++ +FC+         + G                ME  G   D + YN LI
Sbjct: 1753 PTIATFTTLMHRFCRDAKIAEALKLKGV---------------MELCGLKLDVVAYNVLI 1797

Query: 476  KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
              M        A  +Y+EM      P I TY +++ +     N   G K+  ++  RG
Sbjct: 1798 MGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1855



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/437 (21%), Positives = 169/437 (38%), Gaps = 61/437 (13%)

Query: 237  DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
            ++ GF     TYN++++   +  +++  + +++ M  KG+   + T+ + ++        
Sbjct: 1011 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 1070

Query: 296  KKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             KA  + + M K        T N L+    +  K+   AQ+  +  K   +PN  TY  L
Sbjct: 1071 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNAL 1130

Query: 355  LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV------------------------------ 384
            +GG C V +  EA R+ + M   G + + V                              
Sbjct: 1131 IGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDM 1190

Query: 385  -----AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
                 A+ ++++GL K G   +A++L   M   G +P+V +Y+ +I  FC+         
Sbjct: 1191 VVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKE 1250

Query: 432  ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                        N  +Y+ LI  F     +     +   M   G   D  T N L+  + 
Sbjct: 1251 IICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLC 1310

Query: 480  IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                  EA +    M R G  P   TY+ I+  Y   G+       +D+MI+ G  P   
Sbjct: 1311 RDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFF 1370

Query: 540  SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDEL 595
            +Y  L+ GL       EA K+L  +         + YN   A+  ++G  +    + D++
Sbjct: 1371 TYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKM 1430

Query: 596  AQKMRFSGKFEVSNVLA 612
             Q       +  S++L 
Sbjct: 1431 VQNNVLPDSYTYSSLLT 1447



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 142/348 (40%), Gaps = 17/348 (4%)

Query: 244  NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
            N  TYN+++        FE  + +L+ M   GL L+  T+   +N     ++ + A  + 
Sbjct: 1123 NCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLL 1182

Query: 303  ELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
            E M       G      L++ L ++ +  EA QL+ +  K    P++ TY+ L+ G+CRV
Sbjct: 1183 ERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRV 1242

Query: 362  KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             N+  A  +   M   G   + + ++ ++    + G  ++A+K++ VM   G   +  + 
Sbjct: 1243 GNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTC 1302

Query: 422  TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             +++   C+             G   +       L  M   G  P+ +TY+ +I      
Sbjct: 1303 NVLVSSLCRDGK---------LGEAEK------FLCHMSRIGLVPNSITYDCIINGYGSI 1347

Query: 482  KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              P  A   + +M++ G  P+  TY  ++K   + GN    +K  + +       D   Y
Sbjct: 1348 GDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMY 1407

Query: 542  TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              L+          EA    ++M++  +      Y+     L R G++
Sbjct: 1408 NTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 1455



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 22/224 (9%)

Query: 387  NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC--LITGFG 444
            ++++   LK G    A++ FE++   G  P                 +VYTC  ++    
Sbjct: 918  DLLIRVYLKEGMIDYAVETFELVGLVGFKP-----------------SVYTCNMILASMV 960

Query: 445  NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              +R ++V+ L +EM ++G  P+  T+N LI  + ++    +A  + K+M  +GF PTI 
Sbjct: 961  KDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIV 1020

Query: 505  TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            TYN ++  Y + G Y+   ++ D MI +G   D  +Y V I  L +  RS +AY  L++M
Sbjct: 1021 TYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKM 1080

Query: 565  LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
             ++ +    + YN       + G+  V  ++  +M    KF++S
Sbjct: 1081 RKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEM---SKFDLS 1121



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 156/370 (42%), Gaps = 24/370 (6%)

Query: 244  NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAI 301
            +S TY+S+++ L R  +  T V +      +G L  +   +   ++  + A   K A   
Sbjct: 1438 DSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYF 1497

Query: 302  FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCR 360
            FE M K          N ++++  R     +A   F  ++     PNL TY +LL G+ +
Sbjct: 1498 FEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSK 1557

Query: 361  VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             + L+    +++ M+ +G  PD +  + ++ GL K G     +KL   M  +G   +  +
Sbjct: 1558 KQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFT 1617

Query: 421  YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
            + I+I K+ +             G  R+    +DL+  M   G  PD  TYN +   +  
Sbjct: 1618 FNILINKYSES------------GKMRK---AFDLVNFMNTLGVFPDRDTYNHIFNGLNK 1662

Query: 481  QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +    E+  +  EM+ +G  P    Y  ++    + G+ +   K+ DEM   G    + +
Sbjct: 1663 KSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 1722

Query: 541  YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             + ++ GL+   ++ +A   L+ ML   +   +  +        R  +      +A+ ++
Sbjct: 1723 ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAK------IAEALK 1776

Query: 601  FSGKFEVSNV 610
              G  E+  +
Sbjct: 1777 LKGVMELCGL 1786


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 194/435 (44%), Gaps = 32/435 (7%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           ++E+ LDE GI  S  LV  + +R   +       F WA  KPGF  +   ++S+++ L 
Sbjct: 87  SLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLC 146

Query: 257 RARQFETMVSMLEEM--GEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKY---- 308
           +AR+FE   S++ +    ++G  L+S +TF + +  +A A   ++A+  FE    Y    
Sbjct: 147 KAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVC 206

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDK----LKHRFTPNLTTYTVLLGGWCRVKNL 364
           K    +  +  LL+ L +    +EA +  ++    +   + P++  + +LL GW R + L
Sbjct: 207 KSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKL 266

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A ++W EM     KP VV +  ++EG  ++ +   A+++ E MK      N   +  +
Sbjct: 267 KQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPI 326

Query: 425 I------------------WKFCKQNAAV--YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I                  +  C+    +  Y  L+  F     +     +LK M  RG 
Sbjct: 327 IDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGV 386

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P   TYN   K        +E + +Y +++ +G  P   TY++I+K   + G   +  +
Sbjct: 387 DPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQ 446

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  EM  RG  PD  + T+LI  L   +   EA++  +  + +G+    + +      L 
Sbjct: 447 VNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLR 506

Query: 585 RAGRSYVLDELAQKM 599
             G S +   L+  M
Sbjct: 507 SKGMSDMAKRLSSLM 521


>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKA 298
           GF H+  +Y++++  L R+R FE + ++L+ +    +   ET  IA+   +  ++  +KA
Sbjct: 408 GFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMPEKA 467

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           + +F+ M  +     + + N LL  L       +A  +FD+  K  F  N  ++ +++ G
Sbjct: 468 IELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRSTKMGFRRNSISFNIIIKG 527

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W       +A +V+ EMIDK  KP VV  N ++  L   G    A+ L Z M  K   PN
Sbjct: 528 WLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLZDMIQKRHRPN 587

Query: 418 VRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y +++                    ++ CK     +  L++  G R R+D    LL 
Sbjct: 588 AVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDXKTLLL 647

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ R   PD +TYN LI  +  +    EA ++  EM   G +P   TY M++  + Q  
Sbjct: 648 EMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVE 707

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           ++E G KV   M+  G CP   S+  L+ GL+   +   A   LEEM ++ M+
Sbjct: 708 DFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMR 760



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 142/314 (45%), Gaps = 16/314 (5%)

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLT 349
           + ++   A+++F    +  FK    + + L+  L RS+  +  + L D L++       T
Sbjct: 390 SVQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRET 449

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            +  L+  + + +   +A  ++  M        +V+ N +L  L++I +  DAI +F+  
Sbjct: 450 LFIALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRS 509

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              G                ++N+  +  +I G+  +   D  + + +EM ++   P  +
Sbjct: 510 TKMG---------------FRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVV 554

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           T+N+LI  +  +   D A+ + ++M++   +P   TY ++M+     G Y+  +K+  +M
Sbjct: 555 TFNSLIGFLCGKGDLDGAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDM 614

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +GC P   ++ VL+  L  + R  +    L EM  +  K  V+ YN     L + GR+
Sbjct: 615 DYQGCKPRLLNFGVLMSDLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRA 674

Query: 590 YVLDELAQKMRFSG 603
               ++  +M+  G
Sbjct: 675 XEAYKVLVEMQVGG 688



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 2/223 (0%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+NS++  L      +  + +LZ+M +K    +  T+ + M    +  + K+A  +   M
Sbjct: 555 TFNSLIGFLCGKGDLDGAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDM 614

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           +    K  +     L+ +LGR  ++     LL +  + RF P++ TY +L+   C+    
Sbjct: 615 DYQGCKPRLLNFGVLMSDLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRA 674

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA +V  EM   G +P+   + +M++G  ++      +K+   M   G  P + S+  +
Sbjct: 675 XEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDL 734

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
           +    K       C +     +R+M    +  + + +  CP D
Sbjct: 735 VVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEALVKDACPGD 777



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 26/239 (10%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------QNAA 434
            L  L  +    DA+ LF   +  G   +  SY+ +++K  +              QN  
Sbjct: 384 FLADLKSVQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNIN 443

Query: 435 V------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEA 487
           +      +  LI  +G  +  +   +L + M    C    +++N L+  L++I +  D A
Sbjct: 444 IRCRETLFIALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLD-A 502

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + I+    + GF+    ++N+I+K +   G ++   +V++EMI +   P   ++  LIG 
Sbjct: 503 IGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGF 562

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFE 606
           L  +     A   LZ+M++K  +   + Y      L   G+     + A+KM F   ++
Sbjct: 563 LCGKGDLDGAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKY----KEAKKMMFDMDYQ 617


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 191/423 (45%), Gaps = 21/423 (4%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ER  +++ ++F    + E  ++   + + H LV  VL+      R   +FF WAG +  F
Sbjct: 63  ERFIRIL-KIFKWGSDAEKAIEVLKLKVDHRLVHQVLD-IDVEIRAKIQFFKWAGKRQHF 120

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
            H+S TY +++  L  +   + M   +++M      +    +   +     AK   KA++
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGW 358
           +F  +   K        N L+  L      ++   L++++  +   +P+  TY+ L+  +
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +++    A R+++EM + G  P    +  +L    K+ K   A++L E MK KG +P V
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +YT                LI G G   R+D  Y L   M + GC PD +  N LI ++
Sbjct: 301 FTYTE---------------LIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINIL 345

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW-DEMIRRGCCPD 537
                 ++A++++ +M      P + TYN ++K+ F++        +W ++M   G  P 
Sbjct: 346 GRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPS 405

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y +LI G    +R  +A   LEEM EKG       Y      L RA R    +EL Q
Sbjct: 406 SFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQ 465

Query: 598 KMR 600
           +++
Sbjct: 466 ELK 468



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 172/392 (43%), Gaps = 28/392 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           ++ TY++++S  G+  +++    + +EM E GL   E  KI     A   +  K  A   
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTE--KIYTTILAMYFKLNKVEAALR 286

Query: 304 LMNKYKFKAGVDTINC---LLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           L+ + K K    T+     L++ LG+  ++     L F+ LK    P++     L+    
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-GKRSDAIKLFEVMKAKGPSPNV 418
           R   L +A +++ +M      P+VV +N +++ + +     S+A   FE MKA G +P+ 
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406

Query: 419 RSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y I+I  FCK N                     A Y  LI   G  +R +   +L +E
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++E         Y  +IK         +AV ++ E  + G  P ++TYN +M    + G 
Sbjct: 467 LKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGM 526

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +    +   M   GC PD  S+ +++ GL        A +   +M E  +    + YN 
Sbjct: 527 IDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNT 586

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
             + LSRAG   +  +L ++M+  G FE  ++
Sbjct: 587 ILSCLSRAGMFEMAAKLMREMKLKG-FEYDSI 617



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 166/383 (43%), Gaps = 28/383 (7%)

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
           LER+  A    FR F    +  G     + Y +++++  +  + E  + ++EEM  KG  
Sbjct: 243 LERYDFA----FRLFDEMKEN-GLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCA 297

Query: 278 -SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336
            ++ T+   +           A ++F  M K   K  V  IN L+  LGR+   ++A  L
Sbjct: 298 PTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKL 357

Query: 337 FDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLL 394
           F K+   +  PN+ TY  ++      K       +W E M   G  P    + I+++G  
Sbjct: 358 FGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFC 417

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------WKFCKQN-----AA 434
           K  +   A+ L E M  KG  P   +Y  +I               ++  K+N     A 
Sbjct: 418 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR 477

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           VY  +I  FGN  R+    DL  E E+ GC PD  TYNAL+  M    M DEA  + + M
Sbjct: 478 VYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
             +G  P I ++N+I+    +TG  +   +++ +M      PD  SY  ++  L      
Sbjct: 538 RENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMF 597

Query: 555 GEAYKYLEEMLEKGMKAPVLDYN 577
             A K + EM  KG +   + Y+
Sbjct: 598 EMAAKLMREMKLKGFEYDSITYS 620



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 1/175 (0%)

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           + ++  Y  LI        +D ++  +++M    C      ++ ++K++   KM ++A+ 
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGL 548
           ++ ++      PT   YN ++      G++E   ++++E+   G C PD  +Y+ LI   
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              +R   A++  +EM E G+      Y    A   +  +      L ++M+  G
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKG 295


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 21/293 (7%)

Query: 310 FKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
           F+    T N +++ L  +  L    + L + +K  F PN+ TYT+L+ G+C+  +  EA 
Sbjct: 368 FEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEAS 427

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           +V N M  KG   + V +N ++  L K GK  DA++++  M +KG  P++ ++  +I+  
Sbjct: 428 KVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGL 487

Query: 429 CKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           CK                     N   Y  LI  F     +     L+ EM  RGCP D 
Sbjct: 488 CKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDN 547

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN LIK +      ++ + + ++M      P+I++ N+++ S+ +TG      +   +
Sbjct: 548 ITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRD 607

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
           MI+RG  PD  +Y  LI GL    R  EA      +  KG+    + YN   +
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLIS 660



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 184/459 (40%), Gaps = 90/459 (19%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAK 293
           AG + G+ H+   Y  ++  LG   +F+ +  +L++M ++G +  E+ F + M  +  A 
Sbjct: 84  AGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAG 143

Query: 294 ERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTY 351
              +A   + ++   Y F+    + N +LE L     PK A  + +D L    +P + T+
Sbjct: 144 LPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTF 203

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            V++  +C V  +  A  +  +M   G  P+ + + +++  L +  + ++A+KL E M  
Sbjct: 204 GVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFL 263

Query: 412 KGPSPNVRSYTIMIWKFCKQ---------------------------------------- 431
            G  P+V+++  +I   CK                                         
Sbjct: 264 MGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDE 323

Query: 432 -----------NAAVYTCLITGFGNRRRMDIVYDLL-KEMEERGCPPDGLTYNALIKLMK 479
                      N  +Y  LI G+    R +   DLL K M   G  PD  T+N +I  + 
Sbjct: 324 ARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLC 383

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV-------------- 525
            +     A+    EMV+ GF+P + TY +++  + + G++E   KV              
Sbjct: 384 KKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTV 443

Query: 526 ---------------------WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                                + EM  +GC PD  ++  LI GL   D+  EA     +M
Sbjct: 444 GYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDM 503

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L +G+ A  + YN       R       D+L  +MRF G
Sbjct: 504 LLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG 542



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 146/326 (44%), Gaps = 17/326 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GF  N  TY  ++    +   FE    ++  M  KGL L+   +   + A     + +
Sbjct: 400 KKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQ 459

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLL 355
            A+ ++  M+    K  + T N L+  L ++   +EA  L+ D L      N  TY  L+
Sbjct: 460 DALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLI 519

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + R++ + +A ++  EM  +G   D + +N +++ L K G     + L E M  +   
Sbjct: 520 HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIF 579

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ S  I+I  FC+          TG     +++     L++M +RG  PD +TYN+LI
Sbjct: 580 PSINSCNILINSFCR----------TG-----KVNDALQFLRDMIQRGLTPDIVTYNSLI 624

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +       EA+ ++  +   G  P   TYN ++  Y   G +    ++  + +  G  
Sbjct: 625 NGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFI 684

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYL 561
           P++ ++++LI   +  +   E +  L
Sbjct: 685 PNEITWSILINYFVKNNSDSEQFTIL 710


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G+  ++R Y +++    R R+ +    ML+EM EKGL   + T    +NA+        A
Sbjct: 106 GWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 165

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + + ELM     K  V T N L++         +A  L +K++     P+  TY +L+ G
Sbjct: 166 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 225

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C   ++  A R+   M   G   D   +N ++  L K G+   A  LF+ ++ +G  PN
Sbjct: 226 QCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPN 285

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             ++  +I   CK   A               DI +  L++M   GC PD  TY++ I+ 
Sbjct: 286 AVTFNSLINGLCKSGKA---------------DIAWKFLEKMVSAGCTPDTYTYSSFIEH 330

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   K   E +    EM++   KP+   Y +++    +  NY +  + W EM+  GC PD
Sbjct: 331 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 390

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +YT  +     + R  EA   L EM + G+    + YN      +  G++
Sbjct: 391 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQT 442



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 167/368 (45%), Gaps = 27/368 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G+  ++ T+NS++    R  Q +    + ++M  +G    + ++   +     A    
Sbjct: 3   RSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRID 62

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +AV +F  M++      +     L++ L  ++  +E  L+  ++K   + P+   Y  ++
Sbjct: 63  EAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV 118

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR +   EA  +  EM +KG  P VV    ++    K G+ SDA+++ E+MK +G  
Sbjct: 119 DFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG-- 176

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        CK N   Y  L+ GF N  ++     LL +M   G  PD +TYN LI
Sbjct: 177 -------------CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 223

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           +   I    + A R+ + M   G     +TYN ++ +  + G  +    ++D +  RG  
Sbjct: 224 RGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK 283

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-----SRAGRSY 590
           P+  ++  LI GL    ++  A+K+LE+M+  G       Y+ F   L     S+ G S+
Sbjct: 284 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 343

Query: 591 VLDELAQK 598
           +  E+ QK
Sbjct: 344 I-GEMLQK 350



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 138/309 (44%), Gaps = 25/309 (8%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L+    R+     A+ LFDK+  R F  ++ +Y  L+ G C    + EA  ++ EM
Sbjct: 12  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 71

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
                +PD+  +  +++GL    +  + + +   MK  G  P+ R+Y  ++   C++  A
Sbjct: 72  D----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 435 ------------------VYTC--LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                             V TC  +I  +    RM     +L+ M+ RGC P+  TYNAL
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 187

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           ++    +    +A+ +  +M   G  P   TYN++++     G+ E   ++   M   G 
Sbjct: 188 VQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 247

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
             D  +Y  LI  L    R+ +A    + +  +G+K   + +N     L ++G++ +  +
Sbjct: 248 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWK 307

Query: 595 LAQKMRFSG 603
             +KM  +G
Sbjct: 308 FLEKMVSAG 316



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 16/220 (7%)

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC---- 429
           M+  G++PD    N ++ G  +  +   A  LF+ M  +G + +V SY  +I   C    
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 430 ------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                       + +  +Y  L+ G  N  R +    +L+ M+E G  P    Y A++  
Sbjct: 61  IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              ++   EA  + +EM   G  P + T   ++ +Y + G      +V + M  RGC P+
Sbjct: 121 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 180

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +Y  L+ G  ++ +  +A   L +M   G+    + YN
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN 220



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/401 (19%), Positives = 159/401 (39%), Gaps = 39/401 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ TYN ++         E+   +L  M   GL++ + T+   +NA        +A
Sbjct: 211 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 270

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            ++F+ +     K    T N L+  L +S     A    +K+     TP+  TY+  +  
Sbjct: 271 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEH 330

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++K   E      EM+ K  KP  V + I++  LLK        + +  M + G +P+
Sbjct: 331 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 390

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT  +  +C +                    +   Y  L+ G  +  + D    +LK
Sbjct: 391 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILK 450

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPD----------------EAVRIYKEMVRSGFK 500
           +M      P+  TY  L++ L++++ + D                +   ++  M ++ F 
Sbjct: 451 QMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFL 510

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TY+ I++ + + G  E    +   M       +++ YT L+       R  +A+  
Sbjct: 511 PNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVL 570

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           +  M++ G    ++ Y    + L   G++    E+    R+
Sbjct: 571 VCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRW 611



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/443 (20%), Positives = 165/443 (37%), Gaps = 88/443 (19%)

Query: 205 CGIN---LSHNLVVDVLERFRHARRPAFRFF-CWAGDKPGFAHNSRTYNSMMSIL---GR 257
           CG+N   +++NL++       H    AFR      GD  G   +  TYN++++ L   GR
Sbjct: 210 CGVNPDAVTYNLLIRGQCIDGHIE-SAFRLLRLMEGD--GLIADQYTYNALINALCKDGR 266

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
             Q  ++   LE  G K   +  TF   +N    + +   A    E M          T 
Sbjct: 267 TDQACSLFDSLETRGIKP--NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTY 324

Query: 318 NCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +  +E+L + K  +E    + + L+    P+   YT+++    + +N     R W EM+ 
Sbjct: 325 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVS 384

Query: 377 KGFKPDVV-----------------------------------AHNIMLEGLLKIGKRSD 401
            G  PDVV                                   A+N +++G   IG+   
Sbjct: 385 SGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH 444

Query: 402 AIKLFEVMKAKGPSPNVRSYTIM--------------------IWKFCK----------- 430
           A+ + + M +    PN  +Y I+                    +WK  +           
Sbjct: 445 AVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVM 504

Query: 431 ------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N+  Y+ ++ GF    R +    L+  M+E     +   Y AL+      K  
Sbjct: 505 KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRY 564

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A  +   M++ GF P + +Y  ++      G  +  ++++     +   PD+  + V+
Sbjct: 565 LDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVI 624

Query: 545 IGGLISQ---DRSGEAYKYLEEM 564
           I GLI +   D S E    LE M
Sbjct: 625 IDGLIKKGHSDISREMIIMLERM 647



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/379 (18%), Positives = 139/379 (36%), Gaps = 74/379 (19%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ T+NS+++ L ++ + +     LE+M   G      T+   +      K  ++ 
Sbjct: 281 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 340

Query: 299 VA-IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           ++ I E++ K    + V+    + + L        A+   + +     P++ TYT  +  
Sbjct: 341 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 400

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR------------------ 399
           +C    L EA  V  EM   G   D +A+N +++G   IG+                   
Sbjct: 401 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 460

Query: 400 ----------------------------------SDAIKLFEVMKAKGPSPNVRSYTIMI 425
                                             +D   LF+VMK     PN  +Y+ ++
Sbjct: 461 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 520

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F +                     N  +YT L+T F   +R    + L+  M + G  
Sbjct: 521 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 580

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  ++Y  L+  +  +   D+A  I+       + P    + +I+    + G+ ++ R++
Sbjct: 581 PQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 640

Query: 526 WDEMIRRGCCPDDNSYTVL 544
              + R  C P   +Y +L
Sbjct: 641 IIMLERMNCRPSHQTYAML 659


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 178/409 (43%), Gaps = 43/409 (10%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN--- 287
           +F W   + G  HN   +  ++ +L  A+ +  + ++L+   +    S  T   +++   
Sbjct: 93  YFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLG 152

Query: 288 ---------------AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
                          A+    E   A+  F+    Y F+    + N +L +L +      
Sbjct: 153 SWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGV 212

Query: 333 AQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            + ++ + ++ R   N+ T+ V++ G C+V    +AG V  +M   GF P V+ +N +++
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIID 272

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
           G  K GK   A  L + M AK   PN  ++ I+I  FC+                     
Sbjct: 273 GYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQP 332

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N   Y  LI G  +  ++D    L  +M   G  P+ +TYNALI     +KM  EA  + 
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREML 392

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            ++ + G  P + T+N ++ +Y + G  +    +   M+  G CP+ ++Y  LI G   +
Sbjct: 393 DDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCRE 452

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDELA 596
               EA K  +EM   G+KA ++ YN     L + G +     +LDE+ 
Sbjct: 453 GNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMT 501



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 165/350 (47%), Gaps = 37/350 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF+ +  TYN+++    +A +     ++L+EM  K +   E TF I ++ F   +    A
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +   +  V T N L+  L  +    EA  L DK+      PN+ TY  L+ G
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K L EA  + +++  +G  P+V+  N +++   K G+  DA  L  +M   G  PN
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y  +I  FC++            GN +       L KEME  G   D +TYN L+  
Sbjct: 439 VSTYNCLIVGFCRE------------GNVKE---ARKLAKEMEGNGLKADLVTYNILVDA 483

Query: 478 MKIQKMPDEAVRIYKEMV---RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +    +AVR+  EM    + G +  I TYN+++K +   G  E   ++ +EM+ +G 
Sbjct: 484 LCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 543

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
            P+  +Y +L                 +EM+EKG   P +D + +   +S
Sbjct: 544 IPNRTTYDIL----------------RDEMMEKGF-IPDIDGHLYNVSIS 576



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 5/165 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G A N  T+N+++   G+A + +    +   M + G+  ++ T+   +  F      K
Sbjct: 397 KRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL----KHRFTPNLTTYT 352
           +A  + + M     KA + T N L++ L +    ++A  L D++    K     N+ TY 
Sbjct: 457 EARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYN 516

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           VL+ G+C    L EA R+ NEM++KG  P+   ++I+ + +++ G
Sbjct: 517 VLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 561


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 172/373 (46%), Gaps = 29/373 (7%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-----LLSMETFKIAMNAFAAAKERK 296
           A +   YN++++   +A   +  + M   + ++G      +S +T  I +   + A +  
Sbjct: 8   APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD-- 65

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLL 355
            A+A+F+ M     +A V+  N L+    R  + ++A+ LL     H F  ++ TY+ L+
Sbjct: 66  -ALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLM 124

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
               +     +A  V++ M   G  PD V +N+++  L K GK  +A++L E M  KG  
Sbjct: 125 DALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIM 184

Query: 416 PNVRSYTIMI------------WKFC--------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           P+ R+Y I+I            + F           +   Y  L+ G    RR D   DL
Sbjct: 185 PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDL 244

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             EM+   C PD  T+  LI  +      ++A+     +V+ G  P  + YN ++  + +
Sbjct: 245 FDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCR 304

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           +G  + G +++ +MI   C PD  +YT+L+ G   +  +  A + L+EM+ +G    +  
Sbjct: 305 SGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALAT 364

Query: 576 YNKFAADLSRAGR 588
           YN     LS AG+
Sbjct: 365 YNVLIRSLSMAGQ 377



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 21/290 (7%)

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQ 334
           +L + T+   M+A   A    KA+ +F  M K          N L+  LG+  K+ +  +
Sbjct: 114 VLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALE 173

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LL D  +    P+  TY +++          +A   +  M  +   PDVV +N +L GL 
Sbjct: 174 LLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 233

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           K+ +  +A  LF+ M+A    P++ ++  +I    K                     N+ 
Sbjct: 234 KLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSY 293

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           +Y  LI+GF    ++D  Y+L ++M E  C PD +TY  L+     +     A+ + +EM
Sbjct: 294 IYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEM 353

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           VR G  P + TYN++++S    G  E    ++ EMI +G  PD  +Y+ L
Sbjct: 354 VREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 134/297 (45%), Gaps = 29/297 (9%)

Query: 210 SHNLVVDV------LERFRHARRPAFRFFCWAG-DKPGFAHNSRTYNSMMSILGRARQFE 262
           +H  V+DV      ++    A R A     ++   K G   ++  YN ++S LG+  + +
Sbjct: 110 AHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVD 169

Query: 263 TMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
             + +LE+M  KG++    T+ I ++  ++    +KA + F +M + K    V T N LL
Sbjct: 170 EALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLL 229

Query: 322 ENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
             L + +   EA  LFD+++ ++  P+LTT+  L+    +   + +A      ++  G  
Sbjct: 230 NGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHV 289

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN-------- 432
           P+   +N ++ G  + G+     +LF+ M      P+  +YTI++  F ++         
Sbjct: 290 PNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMEL 349

Query: 433 ------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                        A Y  LI       +++  Y L KEM  +G  PD  TY+AL  L
Sbjct: 350 LQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPNL 406



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 16/245 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIK 404
           P++  Y  L+ G+C+  +   A  ++  +  +G  KP+ V+ + ++  L K+ + +DA+ 
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +F+ M   G   +V     +I           TC +      RR      LL  M     
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIH---------CTCRLGMLRQARR------LLHHMTAHAF 113

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D  TY+ L+  +       +A+ ++  M ++G  P    YN+++    + G  +   +
Sbjct: 114 VLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALE 173

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + ++M R+G  PD  +Y ++I  L S  R  +AY +   M  +     V+ YN     L 
Sbjct: 174 LLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 233

Query: 585 RAGRS 589
           +  R+
Sbjct: 234 KLRRT 238



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 36/196 (18%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEA 487
           C  +   Y  LI G+      D   D+ + +++ G C P+ ++++ L+  +       +A
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 66

Query: 488 VRIYKEMVRSGFKPTIH-----------------------------------TYNMIMKS 512
           + +++EM+ +G +  ++                                   TY+ +M +
Sbjct: 67  LAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDA 126

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G      +V+  M + GC PD   Y VLI  L  Q +  EA + LE+M  KG+   
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 573 VLDYNKFAADLSRAGR 588
              YN     LS  GR
Sbjct: 187 CRTYNIVIDVLSSCGR 202


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 186/444 (41%), Gaps = 54/444 (12%)

Query: 216 DVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           DVL+R +H      A  +F    +   F H   TY  M+  L   R+ + +  +L++M  
Sbjct: 45  DVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 274 KGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           +G+  S + F   + ++  A   ++A+  F  M  ++ K  V   N +L+ L      + 
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
              ++  +K     PN+ TY +LL   C+   +  A ++  EM  KG  PD V++  ++ 
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 392 GLLKIGKR------------------------------SDAIKLFEVMKAKGPSPNVRSY 421
            L K+GK                                +A +L + M  KG  PNV SY
Sbjct: 225 SLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISY 284

Query: 422 TIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           T +I                     + C  N   +T LI GF  +       D    M  
Sbjct: 285 TTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIR 344

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P+ + YNAL+  +  ++   +AV ++ +M  +G  P + TY+ ++  Y + G+ + 
Sbjct: 345 EGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDG 404

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             +VW+ MI  GC P+  +YT ++  L       +AY  +E M  +      + +N F  
Sbjct: 405 ASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 582 DLSRAGRSYVLDELAQKMRFSGKF 605
            L  +GR     ++  +M  SG F
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCF 488



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 23/391 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y ++++ L  A   E  +++L +M  +G   ++ TF   +  F       +A
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEA 335

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           +  ++ M +      V   N L+  L   +   +A  +F++++ +   PN+ TY+ L+ G
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  +L  A  VWN MI  G  P+VVA+  M++ L +    + A  L E M+ +   PN
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 418 VRSYTIMI----------WKF----------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++   I          W            C  N   Y  L+      RR    + L+K
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +ME RG   + +TYN +I       M  EA+ +  +MV  G KP   T N+++ +Y + G
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
              +  ++ D +      PD  +YT LI G+ +     EA  YL  ML +G+   V  +N
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWN 635

Query: 578 KFAADL-SRAGRSYVLDELAQKMRFSGKFEV 607
                L S  G S  +  L        KF V
Sbjct: 636 VLVRHLFSNMGHSGAVQFLDASSIMQPKFVV 666


>gi|297607573|ref|NP_001060187.2| Os07g0599100 [Oryza sativa Japonica Group]
 gi|22775643|dbj|BAC15497.1| putative disease resistance protein RPH8A [Oryza sativa Japonica
           Group]
 gi|255677948|dbj|BAF22101.2| Os07g0599100 [Oryza sativa Japonica Group]
          Length = 1494

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 49/470 (10%)

Query: 177 DPREIERVCKVIDELF-----SLDRNMEAV-LDECGINLSHNLVVDVLERFRHARRPAFR 230
           DP  + R+C V+ +       +L R + A+ L     +    L +    RF  + RP  R
Sbjct: 45  DPSLLLRLCTVLYQHQHAPEDALRRRLSALPLPSAAADDLRELFLQASARFPLSWRPVRR 104

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290
                    GFAH+  T    + +L ++R  + + S L       L S+   + A+   A
Sbjct: 105 LLDHLTAAHGFAHSPATAARFLDVLAKSRNVDLLHSTLLSF-PPALRSLAALRAAIRGLA 163

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT 350
            A+E  K  ++  L         ++ I  ++ ++   KLP  A+ +  + +HR+  + T 
Sbjct: 164 PAREVGKVSSLLALFPDADRPRTLNFITDVVCSV--CKLPDVAEKVIKQAEHRYGVSRTG 221

Query: 351 Y--TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
               +L+ G+CR   L +A RVWN M  +G  P   A+  ++  L K  + +DA+K+F+ 
Sbjct: 222 RCCELLVVGYCRAGMLSDACRVWNGMERRGLDPGAAAYEEIVVTLFKNNRVADAMKVFDG 281

Query: 409 MKAKGPSPNVRS--YTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
           M+ +G S   R   Y  ++   CK+                    +  V   L+ G   R
Sbjct: 282 MRRRGVSDGGRGGCYRAVVSWLCKEGRMWGAYMVFAEMFKRGVEVDGEVMGDLVYGLLVR 341

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           RR+   Y +   ++E+    D   Y+ L+K +   K   EA  +++EMV +G +P +HTY
Sbjct: 342 RRVREGYRVFHGVKEK----DIALYHGLMKGLIRIKRAREATEVFREMVATGCEPNMHTY 397

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            M+++ +      + GRK  D ++        N  ++ +GGL+   R+ EA K++E  + 
Sbjct: 398 IMLLQGHLG----KRGRKGRDPLV--------NFESIFVGGLVKAGRTLEATKFVERTMW 445

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
            G+  P  DYNKF    S      + +E+ ++++  G  ++ ++   + E
Sbjct: 446 GGVDVPRFDYNKFLYYFSNEDGVSMFEEVGRRLKDVGHVDLGDIFLTYGE 495


>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 168/353 (47%), Gaps = 22/353 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKA 298
           GF H+  +Y++++  L R+R FE + ++L+ +    +   ET  IA+   +  ++  +KA
Sbjct: 479 GFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMPEKA 538

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
           V +F+ M  +     + + N LL  L  +    +A  +FD+  K  F  N  ++ +++ G
Sbjct: 539 VELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKG 598

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W       +A +V+ EMIDK  KP VV  N ++  L   G    A+ L E M  K   PN
Sbjct: 599 WLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPN 658

Query: 418 VRSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y +++                    ++ CK     +  L++  G R R+D    LL 
Sbjct: 659 AVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLL 718

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ R   PD +TYN LI  +  +    EA ++  EM   G +P   TY M++  + Q  
Sbjct: 719 EMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVE 778

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           ++E G KV   M+  G CP   S+  L+ GL+   +   A   LEEM ++ M+
Sbjct: 779 DFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMR 831



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 8/259 (3%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+NS++  L      +  + +LE+M +K    +  T+ + M    +  + K+A  +   M
Sbjct: 626 TFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDM 685

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           +    K  +     L+ +LGR  ++     LL +  + RF P++ TY +L+   C+    
Sbjct: 686 DYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRA 745

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +EA +V  EM   G +P+   + +M++G  ++      +K+   M   G  P + S+  +
Sbjct: 746 LEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDL 805

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +    K       C +     +R+M    +  + + +  CP D      L++ +K     
Sbjct: 806 VVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEALVKDACPGD-RGAGGLVRELK----- 859

Query: 485 DEAVRIYKEMVRSGFKPTI 503
               +I K +V +  +P I
Sbjct: 860 QNTTKIIKRLVLTVLEPCI 878



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 24/238 (10%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------QNAA 434
            L  L  +    DA+ LF   +  G   +  SY+ +++K  +              QN  
Sbjct: 455 FLADLKSVQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNIN 514

Query: 435 V------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           +      +  LI  +G  +  +   +L + M    C    +++N L+ ++       +A+
Sbjct: 515 IRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAI 574

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            I+    + GF+    ++N+I+K +   G ++   +V++EMI +   P   ++  LIG L
Sbjct: 575 GIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFL 634

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFE 606
             +     A   LE+M++K  +   + Y      L   G+     + A+KM F   ++
Sbjct: 635 CGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKY----KEAKKMMFDMDYQ 688


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + + ++++ ++S+ ++M   G+ + + TF I +N F    +   A++I   M 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    TI  L+    R     +A  L DK+    + P++  Y  ++   C+ K + 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A   + E+  KG +P+VV +  ++ GL    + SDA +L   M  K  +PNV +Y+ ++
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K                     +   Y+ L+ G     R+D    +   M  +GC 
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCL 327

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D ++YN LI      K  ++ +++++EM + G      TYN +++ +FQ G+ +  ++ 
Sbjct: 328 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M   G  PD  +Y +L+GGL       +A    E+M ++ M   ++ Y      + +
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447

Query: 586 AGR 588
            G+
Sbjct: 448 TGK 450



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 178/386 (46%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  ++  T+N +++      Q    +S+L +M + G      T    +N F        A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           V++ + M +  +K  +   N ++++L ++K   +A   F +++ +   PN+ TYT L+ G
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ ++MI K   P+V+ ++ +L+  +K GK  +A +LFE M      P+
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+                    +M+ K C  +   Y  LI GF   +R++    L +
Sbjct: 295 IVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TYN LI+        D+A   + +M   G  P I TYN+++      G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    ++++M +R    D  +YT +I G+    +  EA+     +  KG+K  ++ Y 
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYT 474

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              + L   G  + ++ L  KM+  G
Sbjct: 475 TMMSGLCTKGLLHEVEALYTKMKQEG 500



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 162/354 (45%), Gaps = 22/354 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G+  +  T  S+++   R  +    VS++++M E G    +  +   +++    K   
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A   F+ + +   +  V T   L+  L   S+    A+LL D +K + TPN+ TY+ LL
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   ++EA  ++ EM+     PD+V ++ ++ GL    +  +A ++F++M +KG  
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCL 327

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
            +V SY  +I  FCK                     N   Y  LI GF     +D   + 
Sbjct: 328 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M+  G  PD  TYN L+  +      ++A+ I+++M +      I TY  +++   +
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           TG  E    ++  +  +G  PD  +YT ++ GL ++    E      +M ++G+
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A  ++++M+     P +V  N +L  ++K+ K    I L + M+  G   ++ ++ I
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I  FC        C         ++ +   +L +M + G  PD +T  +L+     +  
Sbjct: 126 VINCFC-------CCF--------QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             +AV +  +MV  G+KP I  YN I+ S  +T         + E+ R+G  P+  +YT 
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           L+ GL +  R  +A + L +M++K +   V+ Y+       + G+     EL ++M
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 2/180 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  +YN++++   +A++ E  + +  EM ++GL+S   T+   +  F  A +  KA
Sbjct: 325 GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 384

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F  M+ +     + T N LL  L  +   ++A ++F+ ++ R    ++ TYT ++ G
Sbjct: 385 QEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 444

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA  ++  +  KG KPD+V +  M+ GL   G   +   L+  MK +G   N
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 66/141 (46%)

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           +++   DL  +M +    P  + +N L+  +   K  D  + + K+M   G +  ++T+N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  +       +   +  +M++ G  PD  +   L+ G   ++R  +A   +++M+E 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 568 GMKAPVLDYNKFAADLSRAGR 588
           G K  ++ YN     L +  R
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKR 205


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 175/383 (45%), Gaps = 26/383 (6%)

Query: 197 NMEAVLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           N ++ LDE  +++S  LV +VL         +      + A++FF W G +  F H +  
Sbjct: 172 NTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANC 231

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           Y+ +M I     +++ M  +++EM + G  +   TF + +     A   +  V  F    
Sbjct: 232 YHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSK 291

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
            + ++    + N +L +L   K  K    ++++ L+  FTP++ TY +++    R+    
Sbjct: 292 TFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTD 351

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              R+ +EM+  GF PD+  +NI+L  L    K   A+ L   M+  G  P V  +T   
Sbjct: 352 RLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTT-- 409

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        LI G     +++     + E  + GC PD + Y  +I         +
Sbjct: 410 -------------LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELE 456

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A  ++KEM   G  P + TYN +++ +   G ++    +  EM  RGC P+   Y+ L+
Sbjct: 457 KAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLV 516

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
             L +  +  EA++ +++M+EKG
Sbjct: 517 NNLKNAGKVLEAHEVVKDMVEKG 539



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 50/322 (15%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL------SHNLVVDVLERFRHAR- 225
           K  A+  E + +C++IDE+        A    C  NL         L  DV+E+F  ++ 
Sbjct: 237 KIFAECGEYKAMCRLIDEMIKDGYPTTA----CTFNLLICTCGEAGLARDVVEQFIKSKT 292

Query: 226 ---RP----------------AFRFFCWAGDK---PGFAHNSRTYNSMMSILGRARQFET 263
              RP                 ++   W  ++    GF  +  TYN +M    R  + + 
Sbjct: 293 FNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDR 352

Query: 264 MVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
           +  +L+EM + G    + T+ I ++  A   +   A+ +   M +   + GV     L++
Sbjct: 353 LYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLID 412

Query: 323 NLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
            L R+ KL      + + +K   TP++  YTV++ G+     L +A  ++ EM +KG  P
Sbjct: 413 GLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 472

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           +V  +N M+ G    GK  +A  L + M+++G +PN                 VY+ L+ 
Sbjct: 473 NVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNF---------------VVYSTLVN 517

Query: 442 GFGNRRRMDIVYDLLKEMEERG 463
              N  ++   ++++K+M E+G
Sbjct: 518 NLKNAGKVLEAHEVVKDMVEKG 539


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 18/362 (4%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TY + +    +A + E       EM   G+L ++  +   +          +A ++F
Sbjct: 520 NAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVF 579

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             +   +    V T + L+  L R+    EA  +F +L+ +   PN  TY  L+ G C+ 
Sbjct: 580 RFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQ 639

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N+ +A ++  EM  KG  PD+V +NI+++GL K G+   A  LF+ ++ +G +PN  +Y
Sbjct: 640 GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTY 699

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             M+  +CK                +     + LL+EM  RG PPD   YN ++     +
Sbjct: 700 AAMVDGYCKS---------------KNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 744

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +  ++A+ +++EM+  GF  T+ ++N +++ Y ++G  +    + +EMI +   P+  +Y
Sbjct: 745 EKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY 803

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           T LI         GEA +   EM E+ +      Y          G    +  L ++M  
Sbjct: 804 TSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA 863

Query: 602 SG 603
            G
Sbjct: 864 KG 865



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 172/382 (45%), Gaps = 26/382 (6%)

Query: 257 RARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           +AR  +  + +   M +KGL+  + T+ I +N F   K  ++A  +   M     K    
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 316 TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N L++   R    ++A  + D++       NL  +  LL G C+   + +A  +  EM
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----- 429
           ++KG +PD   +++++EG  +    + A +L + MK +  +P V +Y+++I   C     
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432

Query: 430 ---------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                          K NA VYT L+T      R++    +L+ M E+G  PD   YN+L
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 492

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I      K  +EA     EM+    +P  HTY   +  Y + G  E+  + ++EM+  G 
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGV 552

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY---- 590
            P+   YT LI G   +    EA+     +L + +   V  Y+     LSR G+ +    
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 591 VLDELAQKMRFSGKFEVSNVLA 612
           +  EL +K      F  +++++
Sbjct: 613 IFSELQEKGLLPNAFTYNSLIS 634



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 163/360 (45%), Gaps = 22/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +S+TY+ ++    R +       +L+EM ++ L  ++ T+ + +N        +  
Sbjct: 376 GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGT 435

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            AI   M     K        L+    +    +E++++ ++++ +   P++  Y  L+ G
Sbjct: 436 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 495

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ K + EA     EM+++  +P+   +   ++G  K G+   A + F  M + G  PN
Sbjct: 496 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  YT +I   CK                    Q+   Y+ LI G     +M   + +  
Sbjct: 556 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFS 615

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E++E+G  P+  TYN+LI     Q   D+A ++ +EM   G  P I TYN+++    + G
Sbjct: 616 ELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAG 675

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E  + ++D++  RG  P+  +Y  ++ G         A++ LEEML +G+      YN
Sbjct: 676 EIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 735



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 18/329 (5%)

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAI 301
            + +TY+ ++  L R  +      +  E+ EKGLL +  T+   ++         KA  +
Sbjct: 589 QDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 648

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
            E M        + T N L++ L ++   + A+ LFD ++ R  TPN  TY  ++ G+C+
Sbjct: 649 LEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK 708

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            KN   A ++  EM+ +G  PD   +N++L    K  K   A+ LF+ M  KG +  V S
Sbjct: 709 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-S 767

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           +  +I  +CK                 ++     LL+EM E+   P+ +TY +LI     
Sbjct: 768 FNTLIEGYCKSG---------------KLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCK 812

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
             M  EA R++ EM      PT  TY  ++  Y   GN      +++EM+ +G  PD  +
Sbjct: 813 AGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT 872

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           Y V+I     +    EA K  +E+L KGM
Sbjct: 873 YYVMIDAYCREGNVMEACKLKDEILVKGM 901



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 166/366 (45%), Gaps = 32/366 (8%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           AF  F    +K G   N+ TYNS++S   +    +    +LEEM  KG+   + T+ I +
Sbjct: 610 AFGIFSELQEK-GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 668

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFT 345
           +    A E ++A  +F+ +          T   +++   +SK P  A QLL + L     
Sbjct: 669 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP 728

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+   Y V+L   C+ +   +A  ++ EM++KGF    V+ N ++EG  K GK  +A  L
Sbjct: 729 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHL 787

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
            E M  K   PN  +YT +I   CK                      A  YT L+ G+ N
Sbjct: 788 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 847

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALI-------KLMKIQKMPDEAVRIYKEMVRSG 498
              M  V  L +EM  +G  PD +TY  +I        +M+  K+ DE + +    ++SG
Sbjct: 848 IGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDE-ILVKGMPMKSG 906

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           F+  + T ++I + +   GN +   +V   M++ G   +  S   L+ G  +   S ++ 
Sbjct: 907 FRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSD 966

Query: 559 KYLEEM 564
             L++M
Sbjct: 967 NLLKQM 972



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 38/337 (11%)

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           L N   +    D I C++ N   S L     ++        +PN   + +L+  + ++  
Sbjct: 111 LCNSNWYGPASDLIKCIIRN-SDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGF 169

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L+EA  V+    +  F+P +++ N +L  LLK  K     K+F+ M A    P+V +YT 
Sbjct: 170 LVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTN 229

Query: 424 MIWKFCK-------------------------------------QNAAVYTCLITGFGNR 446
           MI   CK                                      +   Y  LI GF   
Sbjct: 230 MISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCME 289

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           +R      +L EM + G  P+ +TYNALI     Q   ++A RI  EMV  G +  +  +
Sbjct: 290 KRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIW 349

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N ++    + G  E   ++  EM+ +G  PD  +Y++LI G         A++ L+EM +
Sbjct: 350 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + +   VL Y+     L R G     + + ++M  +G
Sbjct: 410 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG 446



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 19/300 (6%)

Query: 206 GIN---LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
           GIN   +++N+++D L +     R    F    G   G   N  TY +M+    +++   
Sbjct: 656 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR--GLTPNCVTYAAMVDGYCKSKNPT 713

Query: 263 TMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
               +LEEM  +G+      + + +N     ++ +KA+ +F+ M +  F + V + N L+
Sbjct: 714 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLI 772

Query: 322 ENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           E   +S KL +   LL + ++ +F PN  TYT L+   C+   + EA R+W EM ++   
Sbjct: 773 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 832

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P    +  +L G   IG  S+   LFE M AKG  P+  +Y +MI  +C++   +  C  
Sbjct: 833 PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC-- 890

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGL-TYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                + + +I   L+K M  +     GL T + + +  +I    DEA  + + MV+ G+
Sbjct: 891 -----KLKDEI---LVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGW 942


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 172/385 (44%), Gaps = 24/385 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   ++  Y +++  L          ++L EM   G  + + TF   +         ++A
Sbjct: 205 GCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREA 264

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             + + M       GV T   LL+ L R +   EA+ +  ++      N+  +  ++GG 
Sbjct: 265 ARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL---NVVLFNTVIGGC 321

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
                L EA  ++  M  KG +PD   ++I++ GL K+G+   A++L   M+ KG +PNV
Sbjct: 322 LAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNV 381

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++  FCK                     N+  Y  +I       RMD    L++E
Sbjct: 382 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 441

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  +GC PD  +YN +I  +   +  +EA  +++ ++  G      TYN I+ +  + G 
Sbjct: 442 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 501

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++   ++  EMI  GC  D  SY  LI  +        +   LEEM EKG+K   + YN 
Sbjct: 502 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 561

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
             ++L +  R     EL+++M   G
Sbjct: 562 LISELCKERRVRDALELSKQMLNQG 586



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 161/381 (42%), Gaps = 29/381 (7%)

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
           L R R A R   R     G  PG      TY  ++  L R RQ +   +ML  + E   L
Sbjct: 258 LGRVREAARLVDRMMT-KGCMPGVM----TYGFLLQGLCRVRQADEARAMLGRVPE---L 309

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL 336
           ++  F   +    A  +  +A  ++E M     +    T + L+  L +  ++    +LL
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 369

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +  K  F PN+ TYT++L  +C+     +   +  EM  KG   +   +N M+  L K 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           G+  +A+ L + M+++G +P++ SY  +I+  C                      N   Y
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 489

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             +I       R      L KEM   GC  D ++YN LIK M      D ++ + +EM  
Sbjct: 490 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 549

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G KP   +YN+++    +        ++  +M+ +G  PD  +Y  LI GL        
Sbjct: 550 KGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHA 609

Query: 557 AYKYLEEMLEKGMKAPVLDYN 577
           A   LE++  + +   ++ YN
Sbjct: 610 ALNLLEKLHNENVHPDIITYN 630



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 151/361 (41%), Gaps = 54/361 (14%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
           G +P F    R+YN ++S+L RA      +++   M  +  +   TF   + A A     
Sbjct: 134 GVQPSF----RSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARA----- 184

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
                                    L  LGR+   +   LL    +H   P+   Y  ++
Sbjct: 185 -------------------------LCRLGRAD--EALALLRGMARHGCVPDAVLYQTVI 217

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C    + EA  + NEM+  G   DV   + ++ G+  +G+  +A +L + M  KG  
Sbjct: 218 HALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCM 277

Query: 416 PNVRSYTIMIWKFCKQ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           P V +Y  ++   C+                 N  ++  +I G     ++    +L + M
Sbjct: 278 PGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETM 337

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             +GC PD  TY+ L+  L K+ ++   AVR+ +EM + GF P + TY +++ S+ + G 
Sbjct: 338 GLKGCQPDAHTYSILMHGLCKLGRI-GSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++  R + +EM  +G   +   Y  +I  L    R  EA   ++EM  +G    +  YN 
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 579 F 579
            
Sbjct: 457 I 457



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TY+ +M  L +  +  + V +L EM +KG   ++ T+ I +++F         
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            A+ E M+           N ++  L +     EA  L  +++ +   P++ +Y  ++  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 460

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C  + + EA  ++  ++++G   + + +N ++  LL+ G+  DA++L + M   G S +
Sbjct: 461 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 520

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY  +I   CK             GN   +D    LL+EM E+G  P+ ++YN LI  
Sbjct: 521 VVSYNGLIKAMCKD------------GN---VDRSLVLLEEMAEKGIKPNNVSYNILISE 565

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  ++   +A+ + K+M+  G  P I TYN ++    + G       + +++      PD
Sbjct: 566 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625

Query: 538 DNSYTVLI 545
             +Y +LI
Sbjct: 626 IITYNILI 633



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 23/282 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K GFA N  TY  ++    +   ++   ++LEEM  KGL L+ + +   + A       
Sbjct: 373 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 432

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            +A+ + + M        + + N ++ +L  ++  +EA+ +F+ L +     N  TY  +
Sbjct: 433 DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTI 492

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    R     +A R+  EMI  G   DVV++N +++ + K G    ++ L E M  KG 
Sbjct: 493 IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGI 552

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN  SY I+I + CK+                    +   Y  LI G      M    +
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612

Query: 455 LLKEMEERGCPPDGLTYNALIKL-MKIQKMPDEAVRIYKEMV 495
           LL+++      PD +TYN LI    K++ + D A+ + + M 
Sbjct: 613 LLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 654



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +YN+++  L    Q E    M E + E+G+++   T+   ++A       + AV + + M
Sbjct: 453 SYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
             +     V + N L++ + +      + +L +++  +   PN  +Y +L+   C+ + +
Sbjct: 513 ILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRV 572

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  +  +M+++G  PD+V +N ++ GL K+G    A+ L E +  +   P++ +Y I+
Sbjct: 573 RDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 632

Query: 425 IWKFCK----QNAAVY----TCLITGFGNRRRMDIVYD 454
           I   CK     +AA+        +   G+RR M I+ D
Sbjct: 633 ISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPD 670



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 22/228 (9%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFE--VMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           G +P   ++N++L  L +    +DA+ L+   V + + P P   ++ +     C+     
Sbjct: 134 GVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVP-PTTFTFGVAARALCRLG--- 189

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                       R D    LL+ M   GC PD + Y  +I  +  Q    EA  +  EM+
Sbjct: 190 ------------RADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEML 237

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G    ++T++ +++     G      ++ D M+ +GC P   +Y  L+ GL    ++ 
Sbjct: 238 LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQAD 297

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA   L  + E      V+ +N         G+     EL + M   G
Sbjct: 298 EARAMLGRVPELN----VVLFNTVIGGCLAEGKLAEATELYETMGLKG 341


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 160/345 (46%), Gaps = 21/345 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           ++ +++ + R + + T++S+ ++M   G+  +  T  I +N+F        A ++   + 
Sbjct: 57  FSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDIL 116

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    T   L+  L       EA  LFDK+    F P++ TY  L+ G C+V N  
Sbjct: 117 KLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTS 176

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R    M  +  +P VV ++ +++ L K  + ++A+ LF  M AKG SPN  +Y+ +I
Sbjct: 177 TAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLI 236

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C              G+ +       L   M  R   PD LT+N L+  +  + M  
Sbjct: 237 HGLCI------------LGHWKE---AIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVV 281

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR--KVWDEMIRRGCCPDDNSYTV 543
           +A  +   M++S  KP + TYN +M  +      EMG+   V+D M+R+GC P   SYT 
Sbjct: 282 KAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRS--EMGKTVNVFDTMVRKGCVPSVISYTT 339

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           LI G        +A    EEM ++G+    + YN     L   GR
Sbjct: 340 LINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGR 384



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 181/447 (40%), Gaps = 62/447 (13%)

Query: 217 VLERFRHARRPAFRFFCWAGD--KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GE 273
           ++  F H  R  F F    GD  K G+  ++ T+ +++  L    +    + + ++M GE
Sbjct: 95  LINSFCHLNRLGFAF-SVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE 153

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
                + T+   +N          A+     M +   +  V   + ++++L + +   EA
Sbjct: 154 GFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEA 213

Query: 334 QLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
             LF D L    +PN  TY+ L+ G C + +  EA R++  MI +   PD +  N +++ 
Sbjct: 214 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 273

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------IMIWKFCKQN 432
           L K G    A  + +VM      P+V +Y                      M+ K C  +
Sbjct: 274 LCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPS 333

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIY 491
              YT LI G+   + MD    L +EM ++G  PD +TYN LI  L  + ++ D A+ ++
Sbjct: 334 VISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRD-AIALF 392

Query: 492 KEMVRSG-----------------------------------FKPTIHTYNMIMKSYFQT 516
            EMV  G                                     P IH Y+++M    + 
Sbjct: 393 HEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRA 452

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E  R ++ ++  +G  PD  +YT++I GL  Q    EA K   EM E G       Y
Sbjct: 453 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTY 512

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           N       R   +    +L Q+M   G
Sbjct: 513 NLITRGFLRNNETLRAIQLFQEMLSRG 539



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 163/342 (47%), Gaps = 23/342 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N+ TY+S++  L     ++  + +   M  + ++  + TF   ++A        KA
Sbjct: 224 GISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKA 283

Query: 299 VAIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + ++M +   K  V T N L++ +  RS++ K   +    ++    P++ +YT L+ G
Sbjct: 284 HYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLING 343

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+++ + +A  ++ EM  +G  PD V +N ++ GL  +G+  DAI LF  M   G  P+
Sbjct: 344 YCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPD 403

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y I+    CK                     +  +Y+ ++ G      ++   DL  
Sbjct: 404 LVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFS 463

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           ++  +G  PD  TY  +I  +  Q +  EA +++ EM  +G  P   TYN+I + + +  
Sbjct: 464 KLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNN 523

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
                 +++ EM+ RG   D ++ T+L+  ++S D   ++ K
Sbjct: 524 ETLRAIQLFQEMLSRGFSIDVSTTTLLV-EMLSDDGLDQSVK 564



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 133/287 (46%), Gaps = 17/287 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS+M       +    V++ + M  KG + S+ ++   +N +   +   KA+ +FE M
Sbjct: 301 TYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEM 360

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNL 364
           ++        T N L+  L      ++A  LF ++  +   P+L TY +L    C+   L
Sbjct: 361 SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRL 420

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  +   +      PD+  ++I+++G+ + G+   A  LF  + +KG  P+VR+YTIM
Sbjct: 421 AEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIM 480

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C+Q        + G               EM+E GC P+  TYN + +        
Sbjct: 481 INGLCQQGLLAEASKLFG---------------EMDENGCSPNACTYNLITRGFLRNNET 525

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
             A+++++EM+  GF   + T  ++++     G  +  +++  E ++
Sbjct: 526 LRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQILCEFVQ 572



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 112/269 (41%), Gaps = 21/269 (7%)

Query: 332 EAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           +A  LF++ L+ R  P++  ++ LL    R+K+      ++ +M   G   +    NI++
Sbjct: 37  DALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILI 96

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------K 430
                + +   A  +   +   G  P+  ++T +I   C                    +
Sbjct: 97  NSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQ 156

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            +   Y  LI G             L+ ME+R C P  + Y+ +I  +   +   EA+ +
Sbjct: 157 PDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSL 216

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + +M+  G  P   TY+ ++      G+++   +++  MI R   PD  ++  L+  L  
Sbjct: 217 FSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCK 276

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +    +A+  ++ M++  +K  V+ YN  
Sbjct: 277 EGMVVKAHYVVDVMIQSDLKPDVVTYNSL 305



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 62/145 (42%)

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
           N   +D    L   M     PP  + ++ L+  +   K     + +YK+M   G     +
Sbjct: 31  NVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTY 90

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T N+++ S+           V  ++++ G  P   ++T LI GL  + + GEA +  ++M
Sbjct: 91  TLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKM 150

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRS 589
             +G +  VL Y      L + G +
Sbjct: 151 TGEGFQPDVLTYGTLINGLCKVGNT 175


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 17/355 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K G A N  TY  ++       + E    + EEM EKG+   +  +   ++    +   
Sbjct: 291 EKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNV 350

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           K+A+ +F+ M          T   L+  + ++   + AQ+L ++++ +    N   +  L
Sbjct: 351 KRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTL 410

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C    + EA R+   M  KG + DV A+N +  GL K+ ++ +A  L   M  +G 
Sbjct: 411 IDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGV 470

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SPN  S+T +I  +CK+           F   +R      + +EMEE+G  P+ +TYN L
Sbjct: 471 SPNTMSFTTLIDIYCKEG---------NFVEAKR------VFREMEEKGNVPNIITYNVL 515

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I     +    EA ++  E+   G  P ++T   ++      G  +M  K++DEM +RG 
Sbjct: 516 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 575

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            P+  +YT +I GL    RS EA+K  +EM E G+      Y+     L  A  S
Sbjct: 576 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADES 630



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 174/366 (47%), Gaps = 17/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+ +    +      +  +L  M ++G+  ++ T+ + ++ F+   + ++A
Sbjct: 259 GVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 318

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +   +A V     ++    RS   K A +LFD++  +   P+  TY  L+ G
Sbjct: 319 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 378

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  + NEM  KG   + V  N +++G  + G   +A++L  VM+ KG   +
Sbjct: 379 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 438

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y  +    CK N               R D    LL  M ERG  P+ +++  LI +
Sbjct: 439 VFAYNSIASGLCKLN---------------RKDEAKGLLFSMVERGVSPNTMSFTTLIDI 483

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA R+++EM   G  P I TYN+++  Y + GN +   K+ DE+  RG  PD
Sbjct: 484 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 543

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             + T LI G     +   A K  +EM ++G+   V+ Y    + LS+ GRS    +L  
Sbjct: 544 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYD 603

Query: 598 KMRFSG 603
           +M+ +G
Sbjct: 604 EMKETG 609



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 136/310 (43%), Gaps = 20/310 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKL 340
           F +    +A  K   +A+  FE M K  F   +D  +CL+  L  R     ++ L F + 
Sbjct: 162 FDLLFRVYADNKMFGEALEAFEHMEKKGFH--IDERSCLVYLLALRRGGQVDSCLRFFRR 219

Query: 341 KHRFTPNLTTY--TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
                  +T Y  T++L G C+  ++    ++ +E+  KG K +VV +N  +EG  K   
Sbjct: 220 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 279

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
                ++  +M+ +G + NV +YT+               LI GF N  +++    L +E
Sbjct: 280 LGGVAEILTLMEKEGVACNVVTYTL---------------LIHGFSNIGKIEEAQRLFEE 324

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M E+G   D   Y ++I           A+ ++ EM   G  P+ HTY  ++    + G 
Sbjct: 325 MREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQ 384

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E  + + +EM  +G   +   +  LI G        EA +    M +KG+++ V  YN 
Sbjct: 385 MEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNS 444

Query: 579 FAADLSRAGR 588
            A+ L +  R
Sbjct: 445 IASGLCKLNR 454



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 4/150 (2%)

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQK--MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            + ME++G   D    + L+ L+ +++    D  +R ++ MV    + T+++  +++   
Sbjct: 182 FEHMEKKGFHID--ERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGL 239

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G+ EMGRK+ DE+  +G   +  +Y   I G   +   G   + L  M ++G+   V
Sbjct: 240 CKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNV 299

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + Y       S  G+      L ++MR  G
Sbjct: 300 VTYTLLIHGFSNIGKIEEAQRLFEEMREKG 329


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/514 (21%), Positives = 207/514 (40%), Gaps = 96/514 (18%)

Query: 170 VSYKSTADPRE-IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP- 227
           +S     DP   + ++  ++D   +++ N+++   +  + LS N V  VL+      +P 
Sbjct: 70  ISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPE 129

Query: 228 -AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--------- 277
            A RFF WAG +  + H    + S++ +L  +     +  +  E+ ++GLL         
Sbjct: 130 VAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSL 189

Query: 278 ---------------------------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
                                      S+ T+   +N    +   + A  +FE+M+  K 
Sbjct: 190 IKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKI 249

Query: 311 KAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTY------------------ 351
                T N +++   ++ KL K  +   D       P+  TY                  
Sbjct: 250 VPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLS 309

Query: 352 -----------------TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
                            ++++GG C+ +  MEA  V+  M  KG + +V  +  +++   
Sbjct: 310 LYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYS 369

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           K G   +A++LFE MK +G  P+  +Y++++   CK                     NA 
Sbjct: 370 KNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAM 429

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  LI G G   R++   +L +EM E+GC  D   YNA+I  +      D+A+ ++  M
Sbjct: 430 FYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRM 489

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G   T++T+ +++   F+    E   K WD+MI +G  P   S+  L  GL    + 
Sbjct: 490 EEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKV 549

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             A K L+++   G+  P   +      L +A R
Sbjct: 550 ARACKILDDLAPMGI-IPETAFEDMINTLCKAQR 582



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 18/351 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++      R F+T +S+  EM E+GL +   ++ + +      ++  +A A+FE M
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 349

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
           N+   +A V     L+++  ++   +EA  LF+++K+  F P+  TY+VL+ G C+   L
Sbjct: 350 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 409

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +   +++   +KG   + + +  +++GL K G+  DA  LFE M  KG           
Sbjct: 410 DDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKG----------- 458

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
               C +++  Y  +I       ++D    L   MEE GC     T+  LI  +  +   
Sbjct: 459 ----CARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKN 514

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +EA++ + +M+  G  PT+ ++  +       G      K+ D++   G  P + ++  +
Sbjct: 515 EEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIP-ETAFEDM 573

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           I  L    R  EA K  + ++++G + P          L +AG S ++ +L
Sbjct: 574 INTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKL 624


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 172/387 (44%), Gaps = 33/387 (8%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE-MGEKGL---LSMET 281
           R A+ F C            +++NS+++++ +   F   +      +G KG+    ++ T
Sbjct: 120 RMAYEFEC--------KRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLT 171

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
           F + +           AV +F  M   K +  V T   L++ L ++    EA  L D+++
Sbjct: 172 FNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQ 231

Query: 342 -HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
                P+  T+ VL+ G C+  +L    ++ + M  KG  P+ V +N ++ GL   GK  
Sbjct: 232 IDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLE 291

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLI 440
            AI L + M +    PNV +Y  +I    KQ                    N  VY+ LI
Sbjct: 292 KAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALI 351

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +G     +      L KEM  + C  + + Y+A+I  +     PDEA+ +  EM  +  K
Sbjct: 352 SGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCK 411

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P  +TY+ +MK +F+ GN     ++W +M +     ++  Y+VLI GL    +  EA   
Sbjct: 412 PNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMV 471

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +ML KG K  V+ Y      LS AG
Sbjct: 472 WAQMLGKGCKPDVVAYGSMINGLSNAG 498



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 171/361 (47%), Gaps = 22/361 (6%)

Query: 235 AGDKPG-FAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAA 292
           +G K G +     T+ S++        F+++  +L+ M  EK ++  + F +   A+  A
Sbjct: 49  SGPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKA 108

Query: 293 KERKKAVAIFELMN-KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL----KHRFTPN 347
              +KAV +F+ M  +++ K  V + N +L  + +  L   A   ++ +        +PN
Sbjct: 109 HLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPN 168

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           + T+ +++   C+V  + +A +++ +M     +PDV  +  +++GL K  +  +A+ L +
Sbjct: 169 VLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLD 228

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            M+  G  P+  ++ ++I   CK+            G+  R   V  L+  M  +GC P+
Sbjct: 229 EMQIDGCFPSPVTFNVLINGLCKK------------GDLAR---VAKLVDNMFLKGCAPN 273

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TYN LI  + ++   ++A+ +   MV S   P + TY  I+    + G    G +V  
Sbjct: 274 EVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLA 333

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            M  RG   ++  Y+ LI GL  + +S EA +  +EM  K  +   + Y+     L R G
Sbjct: 334 LMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDG 393

Query: 588 R 588
           +
Sbjct: 394 K 394



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 19/254 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  N   Y++++S L +  + +  + + +EM  K   L+   +   ++      +  +A
Sbjct: 339 GYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEA 398

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + +   M   + K    T + L++    +    +A ++  D  KH FT N   Y+VL+ G
Sbjct: 399 LEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHG 458

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--S 415
            C+   + EA  VW +M+ KG KPDVVA+  M+ GL   G   DA++L+  M  + P   
Sbjct: 459 LCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQ 518

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V +Y I++   CKQ++               +    DLL  M +RGC PD +T    +
Sbjct: 519 PDVVTYNILLNALCKQSS---------------ISRAIDLLNSMLDRGCDPDLVTCIIFL 563

Query: 476 KLMKIQKMPDEAVR 489
           + ++ +  P +  R
Sbjct: 564 RTLREKLDPPQDGR 577



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 147/350 (42%), Gaps = 59/350 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY ++M  L +A + +  VS+L+EM   G   S  TF + +N      +  +   + + M
Sbjct: 206 TYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNM 265

Query: 306 NKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                     T N L+  L  + KL K   LL   +  +  PN+ TY  ++ G  +    
Sbjct: 266 FLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRA 325

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           ++  RV   M ++G+  +   ++ ++ GL K GK  +A++LF+ M  K    N   Y+ +
Sbjct: 326 LDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAV 385

Query: 425 IWKFC--------------------KQNAAVYTCLITGF---GNRRRM------------ 449
           I   C                    K NA  Y+ L+ GF   GN  +             
Sbjct: 386 IDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNF 445

Query: 450 ---DIVYDLL-----------------KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
              ++ Y +L                  +M  +GC PD + Y ++I  +    + ++A++
Sbjct: 446 TQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQ 505

Query: 490 IYKEMV--RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +Y EM+      +P + TYN+++ +  +  +      + + M+ RGC PD
Sbjct: 506 LYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPD 555



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 178/436 (40%), Gaps = 58/436 (13%)

Query: 185 CKVIDELFSLDRNMEAV--LDECGIN------LSHNLVVDVL----ERFRHARRPAFRFF 232
           C ++D L   DR  EAV  LDE  I+      ++ N++++ L    +  R A+     F 
Sbjct: 208 CTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFL 267

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAA 291
                  G A N  TYN+++  L    + E  +S+L+ M   K + ++ T+   +N    
Sbjct: 268 ------KGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVK 321

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTT 350
                    +  LM +  +       + L+  L +    +EA  LF ++  +    N   
Sbjct: 322 QGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIV 381

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           Y+ ++ G CR     EA  V +EM +   KP+   ++ +++G  + G    AI++++ M 
Sbjct: 382 YSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMA 441

Query: 411 AKGPSPNVRSYTI---------------MIW-----KFCKQNAAVYTCLITGFGNRRRMD 450
               + N   Y++               M+W     K CK +   Y  +I G  N   ++
Sbjct: 442 KHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVE 501

Query: 451 IVYDLLKEM--EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
               L  EM  +E    PD +TYN L+  +  Q     A+ +   M+  G  P + T  +
Sbjct: 502 DALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCII 561

Query: 509 IMKSYFQTGNYEM-GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +++  +  +    GR+  D ++ R               L+ + R   A K +E ML+K
Sbjct: 562 FLRTLREKLDPPQDGREFLDGLVVR---------------LLKRQRVLGASKIVEVMLQK 606

Query: 568 GMKAPVLDYNKFAADL 583
            +      + +   DL
Sbjct: 607 LLPPKPSTWTRVVEDL 622



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 7/182 (3%)

Query: 429 CKQNAAVYTCLIT---GFGNRRRMDIVYDLLKEME-ERGCPPDGLTYNALIKLMKIQKMP 484
           C++   V  C +     +G     +    L   M  E  C     ++N+++ ++  + + 
Sbjct: 88  CEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLF 147

Query: 485 DEAVRIYKEMVRS---GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
             A+  Y  ++ +      P + T+N+++K+  + G  +   +++ +M    C PD  +Y
Sbjct: 148 YRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTY 207

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
             L+ GL   DR  EA   L+EM   G     + +N     L + G    + +L   M  
Sbjct: 208 CTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFL 267

Query: 602 SG 603
            G
Sbjct: 268 KG 269


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 194/435 (44%), Gaps = 21/435 (4%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ER  +++ ++F    + E  L+   + + H LV +VL +         +FF WAG +  F
Sbjct: 63  ERFIRIL-KIFKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEIHVKIQFFKWAGKRRNF 120

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVA 300
            H+S TY +++  L  A     M   ++EM     ++        +     AK   KA++
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGW 358
           IF  +   K K   +T N ++  L +    ++   L++++  +    P+  TY+ L+  +
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            ++     A  +++EM + G  P    +  +L    K+G+   A+ L + MK KG     
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKG----- 295

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                     C      YT LI G G   +++  Y +   M + GC PD +  N LI L+
Sbjct: 296 ----------CALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLL 345

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW-DEMIRRGCCPD 537
                  +A+++++EM      P + TYN ++K+ F++        +W ++M   G  P 
Sbjct: 346 GKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPS 405

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y++LI G    +R  +A   LEEM EKG       Y      L +A R    +EL Q
Sbjct: 406 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQ 465

Query: 598 KMRFSGKFEVSNVLA 612
           ++R +  +  + V A
Sbjct: 466 ELRENCGYSSARVYA 480



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 168/361 (46%), Gaps = 23/361 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G    ++ Y +++ I  +  + E  + +++EM EKG  L++ T+   +     A + ++A
Sbjct: 260 GLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEA 319

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
            +IF  M K   K  V  IN L+  LG++    +A  LF++++  + TPN+ TY  ++  
Sbjct: 320 YSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKA 379

Query: 358 WCRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
               K       +W E M + G  P    ++I+++G  K  +   A+ L E M  KG +P
Sbjct: 380 LFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAP 439

Query: 417 NVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
              +Y  +I    K                     +A VY  +I   G   R+    DL 
Sbjct: 440 CPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLF 499

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM++ GC PD   YNAL+  M    M DEA  + + M  +G  P ++++N+I+  + +T
Sbjct: 500 NEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFART 559

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +   +++  M      PD  SY  ++G L       EA K ++EM  KG +  ++ Y
Sbjct: 560 GGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITY 619

Query: 577 N 577
           +
Sbjct: 620 S 620



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 25/340 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A    TY  ++  +G+A + E   S+   M ++G    +      +N    A     A
Sbjct: 295 GCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADA 354

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKL-PKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           + +FE M   +    V T N +++ L  SK    EA L ++K+K     P+  TY++L+ 
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID 414

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+   + +A  +  EM +KGF P   A+  ++  L K  +   A +LF+ ++      
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYS 474

Query: 417 NVRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           + R Y +MI                       C  +   Y  L++G       D  + LL
Sbjct: 475 SARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLL 534

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           + MEE GC PD  ++N ++        P  A+ ++  M  S  KP + +YN ++    + 
Sbjct: 535 RTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRA 594

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIG--GLISQDRS 554
           G +E   K+  EM  +G   D  +Y+ ++   G I +D +
Sbjct: 595 GMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHT 634


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 173/388 (44%), Gaps = 22/388 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  N  +Y ++++ L +  Q    + +L  +  K +  ++  +   +++    K   +A
Sbjct: 172 GFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 231

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             ++  M        V T N L+         K+A  LF+K+      PN+ T+ +L+ G
Sbjct: 232 FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDG 291

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+ + L EA  V   M+ +G KPDV  +N +++    + + + A  +F  +  +G +PN
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPN 351

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + SY+IMI  FCK                     +   Y  LI G     ++     L+ 
Sbjct: 352 IHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVD 411

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG P D +TYN+++  +      D+A+ +  +M   G +P I TY  ++    + G
Sbjct: 412 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNG 471

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E  R V+++++ +G   D N YT +I G  S     E+   L +M E G     + Y 
Sbjct: 472 RLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYE 531

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKF 605
                L     +   ++L ++M   G F
Sbjct: 532 IIICSLFDKDENDKAEKLLREMITRGLF 559



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 138/308 (44%), Gaps = 25/308 (8%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           INC    LG++  P    +L   LK  + PN+ T T L+ G C    + +A +  ++++ 
Sbjct: 114 INCF-SQLGQN--PLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVA 170

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------ 430
            GF  + V++  ++ GL K+G+ S A++L   +  K   PNV  Y  +I   CK      
Sbjct: 171 LGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNE 230

Query: 431 --------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                          +   Y  LI+GF    +M    DL  +M      P+  T+N L+ 
Sbjct: 231 AFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD 290

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               ++   EA  +   M++ G KP + TYN +M  Y         + +++ + +RG  P
Sbjct: 291 GFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNP 350

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDEL 595
           + +SY+++I G     +  EA    +EM    +   V+ YN     L + G+ SY L +L
Sbjct: 351 NIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYAL-KL 409

Query: 596 AQKMRFSG 603
             +M   G
Sbjct: 410 VDEMHDRG 417



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 22/263 (8%)

Query: 337 FDKLKHRFTPNLTTYTV--LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           F++L H+  P  + +    +LG   +  +      +  +M   G   D+V  +I++    
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAA 434
           ++G+   +  +   +   G  PNV + T +I   C +                    N  
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y  LI G     +      LL+ ++ +   P+ + YN +I  M   K+ +EA  +Y EM
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           V  G  P + TYN ++  +   G  +    ++++MI     P+  ++ +L+ G   + R 
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRL 298

Query: 555 GEAYKYLEEMLEKGMKAPVLDYN 577
            EA   L  M+++G+K  V  YN
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYN 321



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 15/225 (6%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           K  KP +     +L  L+K    S  + L   M+  G + ++                + 
Sbjct: 66  KNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDL---------------VIL 110

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           + LI  F    +  + + +L ++ + G  P+ +T   LIK + ++    +A++ + ++V 
Sbjct: 111 SILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVA 170

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            GF     +Y  ++    + G      ++   +  +   P+   Y  +I  +       E
Sbjct: 171 LGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNE 230

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           A+    EM+ KG+   V+ YN   +     G+     +L  KM F
Sbjct: 231 AFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIF 275


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 21/290 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   ++          A A+     K  F   V T N L+  L +     EA   F ++
Sbjct: 84  TYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 143

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
               + P L ++  ++ G CR + L +A  V+NEMID+ F P++V ++++++GL K  + 
Sbjct: 144 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 203

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +A +L + M ++G               C+ +   YT L+ GF    R+D    LL+ M
Sbjct: 204 DEAQQLLDRMVSEG---------------CRPDLVAYTPLVLGFSAAGRLDSALGLLRRM 248

Query: 460 EERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             +GC PD +TY  +I KL K+ ++ D+A  I++E+V +   P + TY+ ++  Y +   
Sbjct: 249 VSQGCIPDVVTYTVVIDKLCKVGRV-DDAHEIFRELVANKCSPNVVTYSALIGGYCRASR 307

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            + G KV  EM    C P+  +Y  +I GL   DR+ EAY    EM E G
Sbjct: 308 VDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECG 354



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 28/300 (9%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMN 287
           FR    AG   G   N+ TYN+++  L +  + +   +++ E  ++     + T+   M 
Sbjct: 69  FRKMVAAG---GCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMA 125

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
           A        +A+A F  M +  +   + + N ++  L R++   +A  +F+++  R F P
Sbjct: 126 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 185

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL TY+V++ G C+   L EA ++ + M+ +G +PD+VA+  ++ G    G+   A+ L 
Sbjct: 186 NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLL 245

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
             M ++G  P+V +YT++I K CK                     N   Y+ LI G+   
Sbjct: 246 RRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRA 305

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R+D   +  K M E  C P+ +TYN +I  + +    +EA  +++EM   GF P   TY
Sbjct: 306 SRVD---EGGKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 362



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 25/326 (7%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           I  +CK+  +D  F L R M A    C  N  ++N +VD L   +  R  A R       
Sbjct: 53  INGLCKLGRVDAAFDLFRKMVAA-GGCRPNAFTYNALVDGL--CKQDRLDAARAVIAEAR 109

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K  FA +  TYN++M+ L +  + +  ++   +M E+G + ++ +F   +     A+   
Sbjct: 110 KRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLA 169

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
            A+ +F  M    F   + T + +++ L +S    EAQ L D++      P+L  YT L+
Sbjct: 170 DALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLV 229

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+     L  A  +   M+ +G  PDVV + ++++ L K+G+  DA ++F  + A   S
Sbjct: 230 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCS 289

Query: 416 PNVRSYTIMIWKFCKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
           PNV +Y+ +I  +C+                  N   Y  +I G     R +  Y + +E
Sbjct: 290 PNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFRE 349

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMP 484
           M E G  PD  TY  L + +++   P
Sbjct: 350 MSECGFVPDARTYRGLKRALRMIDHP 375



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 15/243 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKL 405
           N  T +++L G CR   + +A   ++  ++    +PDVV++  ++ GL K+G+   A  L
Sbjct: 9   NDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDL 68

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M A G               C+ NA  Y  L+ G   + R+D    ++ E  +R   
Sbjct: 69  FRKMVAAGG--------------CRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFA 114

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN L+  +      DEA+  + +M   G+ PT+ ++N I+    +        +V
Sbjct: 115 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEV 174

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++EMI R   P+  +Y+V+I GL   D+  EA + L+ M+ +G +  ++ Y       S 
Sbjct: 175 FNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 234

Query: 586 AGR 588
           AGR
Sbjct: 235 AGR 237



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 23/295 (7%)

Query: 300 AIFELMNKYKFKAGVD----TINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           A F+L  K     G      T N L++ L +  +L     ++ +  K  F P++ TY  L
Sbjct: 64  AAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTL 123

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    ++  + EA   + +M ++G+ P +V+ N ++ GL +  + +DA+++F  M  +  
Sbjct: 124 MAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDF 183

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            PN+ +Y+++I   CK +               ++D    LL  M   GC PD + Y  L
Sbjct: 184 HPNLVTYSVVIDGLCKSD---------------QLDEAQQLLDRMVSEGCRPDLVAYTPL 228

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +         D A+ + + MV  G  P + TY +++    + G  +   +++ E++   C
Sbjct: 229 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 288

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            P+  +Y+ LIGG     R  E  K + EM     +  V+ YN     LS   R+
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRN 340



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 20/213 (9%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEV-MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +I+L+GL + G+ + A++ F+  ++     P+V SYT +I   CK               
Sbjct: 14  SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG------------- 60

Query: 446 RRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             R+D  +DL ++M    GC P+  TYNAL+  +  Q   D A  +  E  +  F P + 
Sbjct: 61  --RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVV 118

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN +M + FQ G  +     + +M   G  P   S+  +I GL    R  +A +   EM
Sbjct: 119 TYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEM 178

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
           +++     ++ Y+     L ++ +   LDE  Q
Sbjct: 179 IDRDFHPNLVTYSVVIDGLCKSDQ---LDEAQQ 208


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 191/436 (43%), Gaps = 62/436 (14%)

Query: 191 LFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD-KPGFAHNSRTYN 249
           + SL + MEA     GI      +  ++  F H  + AF F       K G+  N+   N
Sbjct: 29  VISLSKQMEAK----GIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILN 84

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           ++M  L    + +  +   +++  +G  +   ++ I +N      E + A+ +   +   
Sbjct: 85  TLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDR 144

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEA 367
             +  V   + +++ L + KL  EA  L+ ++  R   P++ TYT L+ G+C    LMEA
Sbjct: 145 STRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEA 204

Query: 368 GRVWNEMI-----------------------------------DKGFKPDVVAHNIMLEG 392
             + NEMI                                    KG KPDVV ++I+++G
Sbjct: 205 FGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDG 264

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QN 432
              +G+   A ++F VM   G +P+V SY I+I   CK                     +
Sbjct: 265 YCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPD 324

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
              Y+ LI G     R+  + DL KEM  RG P + +TYN+L+  +   +  D+A+ ++ 
Sbjct: 325 TVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFM 384

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           +M   G +P  +TY  ++    + G  + G+ ++  ++ +G C D  +YTV+I GL  + 
Sbjct: 385 KMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEG 444

Query: 553 RSGEAYKYLEEMLEKG 568
              EA     +M + G
Sbjct: 445 MFDEALAMKSKMEDNG 460



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 170/359 (47%), Gaps = 17/359 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  ++  L + + + T++S+ ++M  KG++  + T  I +N F    +   + ++   + 
Sbjct: 13  FGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKIL 72

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K  ++     +N L++ L      K++    DK+  + F  +  +Y +LL G C++    
Sbjct: 73  KLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETR 132

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A ++   + D+  +PDVV ++ +++GL K     +A  L+  M A+G  P+V +YT +I
Sbjct: 133 CAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLI 192

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
             FC         L+  FG          LL EM  +   P+  TYN LI  +  +    
Sbjct: 193 CGFCLAGQ-----LMEAFG----------LLNEMILKNINPNIYTYNTLIDTLCKEGKVK 237

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           E+  +   M + G KP +  Y+++M  Y   G  +  ++++  M++ G  PD  SY ++I
Sbjct: 238 ESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIII 297

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            GL    R  EA   L EML K M    + Y+     L + GR   + +L ++M   G+
Sbjct: 298 NGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQ 356



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 131/280 (46%), Gaps = 22/280 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+++  L +  + +   ++L  M +KG+   +  + I M+ +    E +KA  IF
Sbjct: 219 NIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIF 278

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            +M +      V + N ++  L + K   EA  L  ++ H+   P+  TY+ L+ G C++
Sbjct: 279 LVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKL 338

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             +     +  EM  +G   ++V +N +L+GL K      AI LF  MK +G  PN  +Y
Sbjct: 339 GRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTY 398

Query: 422 TIMIWKFCK-----------QNAAV---------YTCLITGFGNRRRMDIVYDLLKEMEE 461
           T +I   CK           Q+  V         YT +I+G       D    +  +ME+
Sbjct: 399 TALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMED 458

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            GC P+ +T+  +I+ +  +   D+A ++  EM+  G  P
Sbjct: 459 NGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 55/252 (21%)

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----------- 429
           P ++    +L  L+K+      I L + M+AKG  P++ + +I+I  FC           
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 430 ---------KQNAAVYTCLITGF---GNRRR--------------MDIV----------- 452
                    + N  +   L+ G    G  ++              MD V           
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 453 -------YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
                    LL+ +E+R   PD + Y+ +I  +   K+ DEA  +Y EM   G  P + T
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  ++  +   G       + +EMI +   P+  +Y  LI  L  + +  E+   L  M 
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMT 247

Query: 566 EKGMKAPVLDYN 577
           +KG+K  V+ Y+
Sbjct: 248 KKGVKPDVVIYS 259


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 194/435 (44%), Gaps = 21/435 (4%)

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGF 241
           ER  +++ ++F    + E  L+   + + H LV +VL +         +FF WAG +  F
Sbjct: 63  ERFIRIL-KIFKWGPDAEKALEVLKLKVDHRLVREVL-KIDVEIHVKIQFFKWAGKRRNF 120

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVA 300
            H+S TY +++  L  A     M   ++EM     ++        +     AK   KA++
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGW 358
           IF  +   K K   +T N ++  L +    ++   L++++ +     P+  TY+ L+  +
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            ++     A  +++EM + G  P    +  +L    K+G+   A+ L + MK KG     
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKG----- 295

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                     C      YT LI G G   +++  Y +   M + GC PD +  N LI L+
Sbjct: 296 ----------CALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLL 345

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW-DEMIRRGCCPD 537
                  +A+++++EM      P + TYN ++K+ F++        +W ++M   G  P 
Sbjct: 346 GKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPS 405

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y++LI G    +R  +A   LEEM EKG       Y      L +A R    +EL Q
Sbjct: 406 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQ 465

Query: 598 KMRFSGKFEVSNVLA 612
           ++R +  +  + V A
Sbjct: 466 ELRENCGYSSARVYA 480



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 175/380 (46%), Gaps = 30/380 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G    ++ Y +++ I  +  + E  + +++EM EKG  L++ T+   +     A + ++A
Sbjct: 260 GLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEA 319

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
            +IF  M K   K  V  IN L+  LG++    +A  LF++++  + TPN+ TY  ++  
Sbjct: 320 YSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKA 379

Query: 358 WCRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
               K       +W E M + G  P    ++I+++G  K  +   A+ L E M  KG +P
Sbjct: 380 LFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAP 439

Query: 417 NVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
              +Y  +I    K                     +A VY  +I   G   R+    DL 
Sbjct: 440 CPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLF 499

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM++ GC PD   YNAL+  M    M DEA  + + M  +G  P ++++N+I+  + +T
Sbjct: 500 NEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFART 559

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +   +++  M      PD  SY  ++G L       EA K ++EM  KG +  ++ Y
Sbjct: 560 GGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITY 619

Query: 577 N-------KFAADLSRAGRS 589
           +       K   D + AG++
Sbjct: 620 SSILEAVGKIDEDHTPAGQT 639


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 31/370 (8%)

Query: 228 AFRFF--CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKI 284
           AF+F+   +  +  GF  N  TYN ++  L +  Q +  V    EM  K     + T+  
Sbjct: 179 AFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYST 238

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHR 343
            MN     +   +AV + + M          T N L++ L ++  L + A+L+ +     
Sbjct: 239 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 298

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             PN  TY  L+ G C    L +A  +  +M+     P+ V +  ++ GL+K  +  D +
Sbjct: 299 CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGV 358

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            +   M+ +G                K N  +Y+ LI+G     + +    L KEM E+G
Sbjct: 359 HILMSMEERGQ---------------KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG 403

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P+ + Y A I  +   + PDEA  I +EM+  GF P   TY+ +MK +F+ G+ +   
Sbjct: 404 CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAI 463

Query: 524 KVWDEMIRRG------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            VW EM+ +       CC      +VL+ GL    R  EA      ML +G+K  V+ Y+
Sbjct: 464 LVWKEMMSQDMRHNVVCC------SVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYS 517

Query: 578 KFAADLSRAG 587
                L   G
Sbjct: 518 SMIKGLCDVG 527



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 159/369 (43%), Gaps = 26/369 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIF--- 302
           T+  ++     +R+F  +  +L+ M  +G +  ET F +   A   A    +AV  F   
Sbjct: 91  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 150

Query: 303 --ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
             +L  K   K+    +N +++    S   K    +F      F PNL TY +++   C+
Sbjct: 151 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK 210

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           +  +  A   + EM  K   PDV  ++ ++ GL K  +  +A+ L + M+A+G  PN  +
Sbjct: 211 LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVT 270

Query: 421 YTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           + ++I                     K C  N   Y  LI G   + ++D    LL++M 
Sbjct: 271 FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMV 330

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
              C P+ +TY  +I  +  Q+  ++ V I   M   G K   + Y+ ++   F+ G  E
Sbjct: 331 SSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSE 390

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++W EM  +GC P+   Y   I GL   ++  EA   L+EML KG       Y+   
Sbjct: 391 NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLM 450

Query: 581 ADLSRAGRS 589
               + G S
Sbjct: 451 KGFFKKGDS 459



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 38/377 (10%)

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
           C     PG A N   ++ M + L   +  ++  S+L  + ++G  S   FK  ++ F A 
Sbjct: 134 CGKAHLPGEAVN--FFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSY-AFKFYLHVFGA- 189

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTY 351
                        N   F+  + T N +++ L +      A   F ++  +   P++ TY
Sbjct: 190 -------------NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTY 236

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + L+ G C+ + + EA  + +EM  +G  P+ V  N++++ L K G  S A KL + M  
Sbjct: 237 STLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFL 296

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
           KG  PN  +Y  +I   C +                    N   Y  +I G   +RR + 
Sbjct: 297 KGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAED 356

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              +L  MEERG   +   Y++LI  +  +   + AVR++KEM   G KP +  Y   + 
Sbjct: 357 GVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFID 416

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              +    +    +  EM+ +G  P+  +Y+ L+ G   +  S +A    +EM+ + M+ 
Sbjct: 417 GLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRH 476

Query: 572 PVLDYNKFAADLSRAGR 588
            V+  +     L  +GR
Sbjct: 477 NVVCCSVLLNGLCESGR 493



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 54/287 (18%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY ++++ L + R+ E  V +L  M E+G  + E  +   ++      + + AV ++
Sbjct: 337 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLW 396

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYT--------- 352
           + M +   K  V      ++ L R + P EA+ +L + L   F PN  TY+         
Sbjct: 397 KEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 456

Query: 353 --------------------------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                                     VLL G C    L EA  VW  M+ +G KPDVVA+
Sbjct: 457 GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAY 516

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPS--PNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           + M++GL  +G     +KLF  M+ + P   P+V +Y I+    C+Q+            
Sbjct: 517 SSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQD------------ 564

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N  R     DLL  M + GC PD LT N  ++ ++ +  P +  R++
Sbjct: 565 NLTR---AIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLF 608



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 25/216 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  N+ TY+S+M    +    +  + + +EM  + +  ++    + +N    +   ++A
Sbjct: 438 GFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREA 497

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---HRFTPNLTTYTVLL 355
           + ++  M     K  V   + +++ L       +   LF +++    +  P++ TY +L 
Sbjct: 498 LTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILF 557

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL---------------------L 394
              CR  NL  A  + N M+D+G  PD +  NI LE L                     L
Sbjct: 558 NALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLL 617

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           K  ++  A+++ E M  +   P   +++ +I + CK
Sbjct: 618 KRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCK 653


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 21/345 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  F L  K+ F+   DT   +LE+L + K  K     + + 
Sbjct: 68  VFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEI 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            +  +L   M+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 DEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  D+ ++M  +G  PD +TYN LI  +  +    +A  +  EM R G 
Sbjct: 248 IDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   ++ + MI+     DD  YT LI GL  + R+ +A K
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            L EML  G+K     Y     +  + G      EL ++M+ +G+
Sbjct: 368 MLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGR 412



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 151/353 (42%), Gaps = 40/353 (11%)

Query: 209 LSHNLVVDVLERFRHARRPAFRF-------------------FCWAGDKP----GFAHNS 245
           L    + D +E FR  ++ +FR                      W   K     G+  + 
Sbjct: 77  LESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASL 136

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
             +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  +   +   
Sbjct: 137 YFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M     +  V T + L+  L +     EA  LF + L +   PN  T+T L+ G C+   
Sbjct: 197 MRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L  A  ++ +M+++GF PDVV +N ++ GL K G    A  L + M  KG  P+  +YT 
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTT 316

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I   CK+       L T F  R RM      +KE        D + Y ALI  +  +  
Sbjct: 317 LIDGSCKEGD-----LETAFELRERM------IKE----SIRLDDVVYTALIFGLCQEGR 361

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             +A ++ +EM+R G KP   TY MIM  + + G+ +   ++  EM R G  P
Sbjct: 362 AVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 184/423 (43%), Gaps = 36/423 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y  ++S+LGR    E    + +EM  +G++ S+ ++   +NA+    + + ++ + 
Sbjct: 147 NEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELL 206

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHR-FTPNLTTYTVLLGGWCR 360
           E M + +    + T N ++    R  L  E  L LF +++H    P+L TY  LL   C 
Sbjct: 207 ERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSA-CA 265

Query: 361 VKNLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            + L  EA  V+  MI+ G  P++  ++ ++E   K+GK      L + M+++G  P++ 
Sbjct: 266 ARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDIS 325

Query: 420 SYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           SY ++I                       C  NA+ Y+ L+  +G   R D V +L  +M
Sbjct: 326 SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQM 385

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +E    PD  TYN LI++        E V ++ ++V     P + TY  ++ +  + G +
Sbjct: 386 KESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLH 445

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E  +K+   M  +G  P   +Y+ LI          EA      M E G K+ +  YN  
Sbjct: 446 EDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSL 505

Query: 580 AADLSRAGRSYVLDELAQKMR----------FSGKFEVSNVLARWAETTKNRV-YRKDRI 628
               +R G     + +  +MR          FSG  E      ++ E  K  V   K R 
Sbjct: 506 IHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRC 565

Query: 629 ETD 631
           E D
Sbjct: 566 ELD 568



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 164/383 (42%), Gaps = 58/383 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAK-ERKK 297
           G   +  +Y ++++  GR  Q+ET + +LE M  E+   ++ T+   +NA A    + + 
Sbjct: 178 GVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEG 237

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
            + +F  M     +  + T N LL       L  EA+++F  + +    P +TTY+ ++ 
Sbjct: 238 LLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVE 297

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            + ++  L +   +  EM  +G+ PD+ ++N+++E   K+G   +A+ +F+ M+A G  P
Sbjct: 298 TFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVP 357

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN----RRRMDIV 452
           N  +Y+I++  + K                     +A  Y  LI  FG     +  + + 
Sbjct: 358 NASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 417

Query: 453 YDLLKE-------------------------------MEERGCPPDGLTYNALIKLMKIQ 481
           +DL+ E                               M  +G  P    Y+ LI+     
Sbjct: 418 HDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA 477

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
            + DEA+  +  M   G K TI TYN ++ ++ + G Y+    +   M   G   +  S+
Sbjct: 478 ALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSF 537

Query: 542 TVLIGGLISQDRSGEAYKYLEEM 564
           + +I G     +  EA K   EM
Sbjct: 538 SGIIEGYRQSGQYEEAIKAFVEM 560



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 14/257 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN   YT+++    R   L +   +++EM  +G    V ++  ++    + G+   +++L
Sbjct: 146 PNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLEL 205

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            E MK +  SPN+ +Y  +I   C +    +  L+              L  EM   G  
Sbjct: 206 LERMKRERVSPNILTYNTVI-NACARGDLDWEGLL-------------GLFAEMRHEGVQ 251

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN L+     + + DEA  ++K M+  G  P I TY+ I++++ + G  E    +
Sbjct: 252 PDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAML 311

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             EM   G  PD +SY VLI          EA    ++M   G       Y+       +
Sbjct: 312 LKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGK 371

Query: 586 AGRSYVLDELAQKMRFS 602
            GR   + EL  +M+ S
Sbjct: 372 HGRYDDVRELFLQMKES 388



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/392 (19%), Positives = 143/392 (36%), Gaps = 60/392 (15%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           +  G+  +  +YN ++    +    +  + + ++M   G + +  T+ I +N +      
Sbjct: 316 ESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRY 375

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVL 354
                +F  M +   +    T N L+   G     KE   LF D +     PN+ TY  L
Sbjct: 376 DDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGL 435

Query: 355 LGGWCRVKNLME-AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           +   C    L E A ++   M  KG  P   A++ ++E   +     +A+  F  M   G
Sbjct: 436 VFA-CGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVG 494

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
               + +Y  +I  F +                    +NA  ++ +I G+    + +   
Sbjct: 495 SKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAI 554

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
               EME+  C  D  T   ++ +     + DE+   + E+  SG  P++  Y M++  Y
Sbjct: 555 KAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVY 614

Query: 514 FQTG------------------------------------NYEMGRKVWDEMIRRGCCPD 537
            + G                                    N++M   V+D++   GC   
Sbjct: 615 AKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFG 674

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              Y  L+  L    + G A + L E  ++G+
Sbjct: 675 MRFYNTLLEALWWLGQKGRAARVLTEATKRGL 706



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 3/180 (1%)

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           IW  CK N  +YT +I+  G    ++   ++  EM  +G      +Y ALI         
Sbjct: 142 IW--CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQY 199

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTV 543
           + ++ + + M R    P I TYN ++ +  +   ++E    ++ EM   G  PD  +Y  
Sbjct: 200 ETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNT 259

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+    ++    EA    + M+E G+   +  Y+       + G+   +  L ++M   G
Sbjct: 260 LLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEG 319


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 175/377 (46%), Gaps = 25/377 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y +M+ +L +   F     +L+EM E+ + +S +     +  +  A+   +A  +F  M 
Sbjct: 147 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 206

Query: 307 KYKFKAG-VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           +Y   A    T+  LL  L + +L  EAQ +FD  K  FTP++  YT L+  WCR   L 
Sbjct: 207 EYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRLN 266

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA RV+ EM   G  P+V  +  +++ + + G+   A +L   M   G  PN  ++  ++
Sbjct: 267 EAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIM 326

Query: 426 WKF--------------------CKQNAAVYTCLI-TGFGN-RRRMDIVYDLLKEMEERG 463
                                  C+ +   Y  L+ T  G  +  +D    +L  M  +G
Sbjct: 327 RAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKG 386

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C PD  T+N ++KL+ +    + A ++Y+ M     KP + TYN++M+ +    + +M  
Sbjct: 387 CIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVL 446

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML-EKGMKAPVLDYNKFAAD 582
           ++  +M  +G  P+ N+Y  LI     +     A+  L EM+ EK +K     Y+   A 
Sbjct: 447 RIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLAL 506

Query: 583 LSRAGRSYVLDELAQKM 599
           L +AG+    +EL + M
Sbjct: 507 LRKAGQLRRHEELVEMM 523



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 154/368 (41%), Gaps = 26/368 (7%)

Query: 192 FSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYN 249
           F L R++   + E  + +S  L++ ++ R+  A  P  A   F    +    A +  T  
Sbjct: 160 FPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLA 219

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           S++  L + R      +M +         +  +   ++A+  +    +A  +F  M +  
Sbjct: 220 SLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAG 279

Query: 310 FKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
               V T   +++ + R+ ++P+  +LL   +     PN  T+  ++    +     +  
Sbjct: 280 VTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVL 339

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--DAIKLFEVMKAKGPSPNVRSYTIMIW 426
           +V N+M   G +PD++ +N ++E     G+ +   A+K+   M AKG  P+  ++  M+ 
Sbjct: 340 QVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLK 399

Query: 427 KF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
                                 CK N   Y  L+  F   + MD+V  + K+M+ +G  P
Sbjct: 400 LVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEP 459

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           +  TY ALI+    +     A    +EMV     KPT   Y+M++    + G      ++
Sbjct: 460 NVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEEL 519

Query: 526 WDEMIRRG 533
            + M+ RG
Sbjct: 520 VEMMVDRG 527



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 2/151 (1%)

Query: 454 DLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           DL + MEE G   PD  T  +L+  +  +++  EA  ++ +  +S F P +  Y  ++ +
Sbjct: 200 DLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMF-DSYKSVFTPDVVLYTTLVHA 258

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + ++G      +V+ EM + G  P+  +YT +I  +    +   A + L +M++ G    
Sbjct: 259 WCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPN 318

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              +N       +AGRS  + ++  +MR  G
Sbjct: 319 TATFNAIMRAHVKAGRSEQVLQVHNQMRQLG 349


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 168/364 (46%), Gaps = 20/364 (5%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  +Y SM+ +L   GR  + E + + +E   E+ +     +   +  + +A   +
Sbjct: 279 GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME--AERSVPCAYAYNTMIMGYGSAGRFE 336

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A  + E + +      V + N +L  LG+ +   EA  LF+ +K    PN +TY +++ 
Sbjct: 337 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIID 396

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C    + EA R+ +EM      P+++  NIM++ L K  K  +A K+FE    +G   
Sbjct: 397 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG--- 453

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  +   Y  LI G G + ++D  Y L ++M + G   + + Y +LI+
Sbjct: 454 ------------CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 501

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
              I    ++  +I+KE++R G KP +   N  M   F+ G  E GR +++++   G  P
Sbjct: 502 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 561

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY++LI GL    ++ E       M ++G       YN       ++G+ +   E+ 
Sbjct: 562 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 621

Query: 597 QKMR 600
           ++M+
Sbjct: 622 EEMK 625



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 190/417 (45%), Gaps = 24/417 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+ N++VD L + R     A++ F  A  + G   +  TY S++  LG+  Q +    + 
Sbjct: 424 LTVNIMVDRLCKARKLEE-AYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVDEAYRLF 481

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           E+M + G   +   +   +  F     ++    IF+ + +   K  +  +N  ++ + ++
Sbjct: 482 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA 541

Query: 328 KLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              ++ +++F+ ++ + F P++ +Y++L+ G  +     E   +++ M  +GF  D  A+
Sbjct: 542 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 601

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------------- 430
           N +++G  K GK   A ++ E MK K   P V +Y  ++    K                
Sbjct: 602 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 661

Query: 431 ----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N  +Y+ LI GFG   R+D  Y +L+EM ++G  P+  T+N+L+  +   +  +E
Sbjct: 662 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 721

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+  ++ M      P  +TY++++    +   Y      W +M ++G  P+  +YT +I 
Sbjct: 722 ALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMIS 781

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           GL       +AY   E     G       +N     +S A R+    ++ ++ R  G
Sbjct: 782 GLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRG 838



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 181/438 (41%), Gaps = 62/438 (14%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHN--SRTYNSMMSILGRARQFETMVSM 267
           + ++V+ VL   R+    A  F   +       H   +  Y++++  L        +  +
Sbjct: 74  TADVVISVLRSIRNPSLAAPFFLLASSSSASAPHPLPADAYHAVLPFLHH--DLAALEKV 131

Query: 268 LEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           LEEM   G  L  +       A   A+    AV    +M + KF+        L+  L  
Sbjct: 132 LEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAE 191

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           ++ P+ A  L  +++   +   +  +T L+    R   + +A  + +E+     +PD+V 
Sbjct: 192 ARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVL 251

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN------------- 432
           +N+ ++   K G    A K F  +KA+G  P+  SYT MIW  CK               
Sbjct: 252 YNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 311

Query: 433 -------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                  A  Y  +I G+G+  R +  Y LL+ + ERGC P  +++N+++  +  ++  D
Sbjct: 312 AERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVD 371

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM---------------- 529
           EA+ ++ E+++   +P   TYN+I+      G  E   ++ DEM                
Sbjct: 372 EALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMV 430

Query: 530 -------------------IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
                               +RGC PD  +Y  LI GL  + +  EAY+  E+ML+ G  
Sbjct: 431 DRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN 490

Query: 571 APVLDYNKFAADLSRAGR 588
           A  + Y     +    GR
Sbjct: 491 ANPVVYTSLIRNFFIHGR 508



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           +F P  + YTVL+G     +    A  +  +M + G++  V     ++  L + G+ +DA
Sbjct: 174 KFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADA 233

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           + L + +K     P++                +Y   I  FG    +D+ +    E++ +
Sbjct: 234 LALVDEVKGSCLEPDI---------------VLYNVCIDCFGKAGNVDMAWKFFHELKAQ 278

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD ++Y ++I ++       EA  ++ +M      P  + YN ++  Y   G +E  
Sbjct: 279 GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDA 338

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            K+ + +  RGC P   S+  ++  L  + +  EA   L E+++K  +     YN     
Sbjct: 339 YKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS-LFEVMKKDAEPNSSTYNIIIDM 397

Query: 583 LSRAGR---SY-VLDELAQKMRFSGKFEVSNVLARWAETTK 619
           L   GR   +Y +LDE+     F     V+ ++ R  +  K
Sbjct: 398 LCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 438



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+  F  A  K G   N   Y+S++   G+  + +    +LEEM +KGL  ++ T+   +
Sbjct: 652 AYMLFEEAKSK-GIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL 710

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFT 345
           +A   A+E  +A+  F+ M + K      T + L+  L R +   +A + + D  K    
Sbjct: 711 DALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLV 770

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ TYT ++ G  +V N+ +A  ++      G  PD  + N ++EG+    +  +A ++
Sbjct: 771 PNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQV 830

Query: 406 FEVMKAKGPSPNVRS 420
           FE  + +G   N++S
Sbjct: 831 FEETRLRGCRINIKS 845



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           RR+D     +  M      P    Y  LI  +   + P+ A+ + ++M   G++  +H +
Sbjct: 158 RRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLF 217

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
             ++++  + G       + DE+  +G C  PD   Y V I           A+K+  E+
Sbjct: 218 TTLVRALAREGQVADALALVDEV--KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL 275

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             +G+K   + Y      L +AGR    +EL  +M
Sbjct: 276 KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM 310


>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 394

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 145/293 (49%), Gaps = 21/293 (7%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A  +FE +  ++ K  V ++N LL  L +++  ++   +F  + +  +P+  T+ +L+ 
Sbjct: 36  RAFQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIH 95

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM-KAKGPS 415
             C   +L     V++EM  +G KP+VV    ++ GL    K  +A++L E M K     
Sbjct: 96  AACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIK 155

Query: 416 PNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
           PN   YT +I  FC                    K  +AVY+ LI+      R + V D+
Sbjct: 156 PNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDI 215

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L+EM E GC PD +TYNA+I     +   + A R+  EMV  G KP + ++N I+    +
Sbjct: 216 LREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCK 275

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            G  +    + ++M RRGC PD  SY ++  GL    +  EA   L+EM+ KG
Sbjct: 276 EGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKG 328



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 17/308 (5%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           ++ NS+++ L + RQ E M  +  ++   G     TF I ++A     +      +F+ M
Sbjct: 54  KSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEM 113

Query: 306 NKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKN 363
            K   K  V T   L+  L   SKL +  +L  D +K +   PN + YT L+ G+C V  
Sbjct: 114 QKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGE 173

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L  A ++  EM+    K     ++ ++  L K G++ +   +   M   G  P+  +Y  
Sbjct: 174 LNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNA 233

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I   CK+N                ++  + ++ EM E+GC PD  ++N +I  +  +  
Sbjct: 234 IINGHCKEN---------------DLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGK 278

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            D+A+ + ++M R G  P + +Y +I     +    +    + DEMI +G  P + S   
Sbjct: 279 LDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINK 338

Query: 544 LIGGLISQ 551
           L+  L  +
Sbjct: 339 LVDRLCQE 346



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 16/265 (6%)

Query: 325 GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           GR+ LP  A  +F+++   R    + +   LL    + + L +  +V+ ++ + G  PD 
Sbjct: 29  GRAHLPDRAFQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDA 87

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
              NI++      G       +F+ M+ +G  PNV ++  +I+     N+ +   L    
Sbjct: 88  CTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGL-SLNSKLKEAL---- 142

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
             R + D+V   + +       P+   Y  LIK        + A ++ +EMV S  K   
Sbjct: 143 --RLKEDMVKVYMIK-------PNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVS 193

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
             Y+ ++ + F+ G  E    +  EM   GC PD  +Y  +I G   ++    A++ ++E
Sbjct: 194 AVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDE 253

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M+EKG K  V  +N     L + G+
Sbjct: 254 MVEKGCKPDVFSFNTIIGWLCKEGK 278



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 2/176 (1%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           CK+       L+      R+++ +  +  ++   G  PD  T+N LI    +    D   
Sbjct: 49  CKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDACTFNILIHAACLCGDLDAVW 107

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGG 547
            ++ EM + G KP + T+  ++         +   ++ ++M++     P+ + YT LI G
Sbjct: 108 GVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKG 167

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                    A+K  EEM+   +K     Y+   + L + GR   + ++ ++M  +G
Sbjct: 168 FCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENG 223


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 158/320 (49%), Gaps = 16/320 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   M A+  +     A+  F L  K+KF    DT   +LE+L + K  K     + + 
Sbjct: 68  VFSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEI 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +++  +C+   +  A  V++ +   G +P VV+ N ++ G +++G  
Sbjct: 128 LECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +  +L   M A G  P+V +Y+++I   CK++               ++D   +L  EM
Sbjct: 188 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKES---------------KVDEANELFNEM 232

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            +RG  P+G+T+  LI +     M D A+ IYK+M+  GF P + TYN ++    + G+ 
Sbjct: 233 LDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDL 292

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +  R + DEM   G  PD  +YT LI G   +     A+++ + M+++ ++   + Y   
Sbjct: 293 KQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTAL 352

Query: 580 AADLSRAGRSYVLDELAQKM 599
            + L + GR+   +++ ++M
Sbjct: 353 VSGLCQEGRADDAEKMFREM 372



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 158/350 (45%), Gaps = 34/350 (9%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L    V D ++ FR  ++  F    W            T   ++  L + + F+ +    
Sbjct: 77  LESGFVHDAIQCFRLTKKHKF----WV--------PFDTCRKVLEHLMKLKYFKLVWDFY 124

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR- 326
           +E+ E G   S+  F I M+ F    E ++A ++F+ + K+  +  V + N L+    R 
Sbjct: 125 KEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRL 184

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
             L +  +L          P++ TY+VL+ G C+   + EA  ++NEM+D+G  P+ V  
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTF 244

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
             +++   K G    A+++++ M ++G SP++ +Y  +I+  CK+               
Sbjct: 245 TTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSM 304

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +   YT LI G      ++  ++  K M +     D + Y AL+  +  +   D+
Sbjct: 305 NGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADD 364

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           A ++++EM+  G KP   TY MI+  + + G+     ++  EM R G  P
Sbjct: 365 AEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 15/215 (6%)

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           +LE L+K+         ++ +   G   ++  + I++ +FCK+            G  RR
Sbjct: 107 VLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKE------------GEMRR 154

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
              V+D + +    G  P  +++N L+         DE  R+   M  SG +P ++TY++
Sbjct: 155 AQSVFDAITKW---GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 211

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++    +    +   ++++EM+ RG  P+  ++T LI           A +  ++ML +G
Sbjct: 212 LINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQG 271

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               ++ YN     L + G    +  L  +M  +G
Sbjct: 272 FSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNG 306



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 37/216 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+ +++ L +  + +    +  EM ++GL+ +  TF   ++          A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSA 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           + I++ M    F   + T N L+  L +    K+ + L D++  +   P+  TYT L+ G
Sbjct: 261 MEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDG 320

Query: 358 WCR-----------------------------VKNLMEAGR------VWNEMIDKGFKPD 382
            C+                             V  L + GR      ++ EM+  G KPD
Sbjct: 321 CCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPD 380

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
              + +++    K G    A +L + M+  G  P V
Sbjct: 381 NGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCV 416


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 165/351 (47%), Gaps = 22/351 (6%)

Query: 260 QFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + +  V +  EM + + L S+  F   ++A A   +    +++ E M   +    + + N
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 319 CLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+    R S+LP    +L   +K  + P++ T + LL G+C  K + EA  + ++M   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
            ++P+ V  N ++ GL    K S+A+ L + M A+G  P++ +Y  ++   CK+      
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         +  +YT +I    N + ++   +L  EM+ +G  P+ +TYN+LI+ 
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       +A R+  +M+     P + T++ ++ ++ + G      K++DEMI+R   PD
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y+ LI G    DR  EA    E M+ K     V+ YN       +A R
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 181/405 (44%), Gaps = 57/405 (14%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            +++  +YN +++   R  Q    +++L +M + G    + T    +N +   K   +AV
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+ + M   +++    T N L+  L       EA  L D++  R   P+L TY  ++ G 
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230

Query: 359 CR-----------------------------------VKNLMEAGRVWNEMIDKGFKPDV 383
           C+                                    KN+ +A  ++ EM +KG +P+V
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV-------- 435
           V +N ++  L   G+ SDA +L   M  +  +PNV +++ +I  F K+   V        
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350

Query: 436 ------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                       Y+ LI GF    R+D    + + M  + C P+ +TYN LIK     K 
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +E + +++EM + G      TYN +++  FQ G+ +M +K++ +M+  G  PD  +Y++
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L+ GL    +  +A    E + +  M+  +  YN     + +AG+
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 179/383 (46%), Gaps = 30/383 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFEL 304
           TY ++++ L +    +  +S+L++M EKG +  +   +   ++A    K    A+ +F  
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280

Query: 305 MNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           M+    +  V T N L+    N GR      ++LL D ++ +  PN+ T++ L+  + + 
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGR--WSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA ++++EMI +   PD+  ++ ++ G     +  +A  +FE+M +K   PNV +Y
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  FCK                     N   Y  LI G       D+   + K+M  
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458

Query: 462 RGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            G PPD +TY+ L+  L K  K+ ++A+ +++ + +S  +P I+TYN++++   + G  E
Sbjct: 459 DGVPPDIITYSILLDGLCKYGKL-EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVE 517

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
            G  ++  +  +G  P+   YT +I G   +    EA     EM E G       YN   
Sbjct: 518 DGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               R G      EL ++MR  G
Sbjct: 578 RARLRDGDKAASAELIKEMRSCG 600



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 181/385 (47%), Gaps = 22/385 (5%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAV 299
           +  N+ T+N+++  L    +    V++++ M  +G    + T+   +N      +   A+
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           ++ + M K K +A V     +++ L   K   +A  LF ++ ++   PN+ TY  L+   
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C      +A R+ ++MI++   P+VV  + +++  +K GK  +A KL++ M  +   P++
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 419 RSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y+                    +MI K C  N   Y  LI GF   +R++   +L +E
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M +RG   + +TYN LI+ +      D A +I+K+MV  G  P I TY++++    + G 
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E    V++ + +    PD  +Y ++I G+    +  + +     +  KG+K  V+ Y  
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
             +   R G     D L ++M+  G
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDG 565



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 165/378 (43%), Gaps = 22/378 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + +  +F+ ++S+ E M    +   + ++ I +N F    +   A+A+   M 
Sbjct: 83  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++  + T++ LL      K   EA  L D++    + PN  T+  L+ G        
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  + + M+ +G +PD+  +  ++ GL K G    A+ L + M+      +V  YT +I
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 262

Query: 426 WKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                    + N   Y  LI    N  R      LL +M ER   
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 322

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +T++ALI     +    EA ++Y EM++    P I TY+ ++  +      +  + +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ MI + C P+  +Y  LI G     R  E  +   EM ++G+    + YN     L +
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 586 AGRSYVLDELAQKMRFSG 603
           AG   +  ++ +KM   G
Sbjct: 443 AGDCDMAQKIFKKMVSDG 460



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 175/383 (45%), Gaps = 25/383 (6%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID   SL + ME    E  + + +  ++D L  +++    A   F    D  G   N  T
Sbjct: 236 IDLALSLLKKMEKGKIEADVVI-YTTIIDALCNYKNVN-DALNLFTEM-DNKGIRPNVVT 292

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YNS++  L    ++     +L +M E+ +  ++ TF   ++AF    +  +A  +++ M 
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K      + T + L+          EA+ +F+ +  +   PN+ TY  L+ G+C+ K + 
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   ++ EM  +G   + V +N +++GL + G    A K+F+ M + G  P++ +Y+I++
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ + Y  +I     + + +EA  +++EM   G  P   TYN ++++  + G+     ++
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAEL 592

Query: 526 WDEMIRRGCCPDDNSYTVLIGGL 548
             EM   G   D ++ +++I  L
Sbjct: 593 IKEMRSCGFVGDASTISMVINML 615


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 170/389 (43%), Gaps = 27/389 (6%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           FF WA  + G  HN  + N  + +L R  R+ E +      M    + +  T+ I +  F
Sbjct: 10  FFDWARSRVG--HNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGF 67

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
           ++A +   A+ + E M    F+        L++ L  +    EA   F  +     P++ 
Sbjct: 68  SSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVM 127

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TYT L+   C+     EA  +  EM+ +G  PD V  + +++GL K G    A ++ E +
Sbjct: 128 TYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDV 187

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAV---------------------YTCLITGFGNRRR 448
             +G   +  ++  +I + C +  +V                     +  +I GF   + 
Sbjct: 188 IQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKD 247

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +D  Y LL+ M E+GC P+  T+  LI  +       EA ++ ++MV  G  P + TY+ 
Sbjct: 248 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYST 307

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++    + G  +   +++  M RR C P+  ++ +LI GL    R  EA +    M E G
Sbjct: 308 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 367

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
               ++ YN     L    +S+ +DE  Q
Sbjct: 368 CAPDIITYNSLIDGLC---KSFQVDEAFQ 393



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 147/323 (45%), Gaps = 53/323 (16%)

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + NC L+ L R    +EA  LF     R   PN  TY +L+ G+    +L  A ++  
Sbjct: 22  VFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLE 81

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM   GF+ + V H  +++GL   G+  +A++ F  M AK  +P+V +YT ++   CK  
Sbjct: 82  EMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAG 140

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                          + D    +L+EM  +GC PD +T++ LI  +      ++A R+ +
Sbjct: 141 ---------------KFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLE 185

Query: 493 EMVR------------------------------------SGFKPTIHTYNMIMKSYFQT 516
           ++++                                     GF PT+  +N+++  + + 
Sbjct: 186 DVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKA 245

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            + +   K+ + MI +GC P+  ++T+LI GL   +R GEA + LE+M+  G    V+ Y
Sbjct: 246 KDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTY 305

Query: 577 NKFAADLSRAGRSYVLDELAQKM 599
           +     L + G+     EL Q M
Sbjct: 306 STVINGLCKQGQVDDAYELFQLM 328



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/460 (19%), Positives = 187/460 (40%), Gaps = 96/460 (20%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF      +N +++   +A+  ++   +LE M EKG + ++ TF I +     A    +A
Sbjct: 227 GFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEA 286

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + E M        V T + ++  L +     +A  LF  ++ R   PN+ T+ +L+ G
Sbjct: 287 QQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDG 346

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK---------------------- 395
            C+ K + EA ++++ M + G  PD++ +N +++GL K                      
Sbjct: 347 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 396 --------------IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------- 434
                         +G+ +DA ++F ++  KG SP++ +YT +I ++CK + A       
Sbjct: 407 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 466

Query: 435 -------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                          + ++ G       +    L   M  RGC  D L YN +++ M   
Sbjct: 467 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 526

Query: 482 KMPDEAVRIYKEMV--------------------------------------RSGFKPTI 503
              D+A+ + ++++                                        GF   +
Sbjct: 527 SKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAV 586

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            +YN ++    +   ++   +V++ M+  G  P+ ++  V+I  L S  +  +AY+ ++ 
Sbjct: 587 SSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQR 646

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M + G    +   N       ++GR+ +  +L ++M  +G
Sbjct: 647 MSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAG 686



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 183/400 (45%), Gaps = 30/400 (7%)

Query: 181 IERVCKV--IDELFSLDRNMEAVLDECGINL-SHNLVVDVL---ERFRHARRPAFRFFCW 234
           I  +CK   +D+ + L + ME     C  N+ +HN+++D L   +R   AR+   R    
Sbjct: 309 INGLCKQGQVDDAYELFQLMER--RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRM--- 363

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAA 292
              + G A +  TYNS++  L ++ Q +    + + + E G+ +    T+    + +AA 
Sbjct: 364 --RETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAAL 421

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCL-LENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
                A  IF ++    F   + T   L LE    S+  +  +L+ +     F P + T 
Sbjct: 422 GRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 481

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + +LGG     +   A ++++ M  +G   D + +N+++EG+ +  K   A+ + E +  
Sbjct: 482 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVID 541

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           K              KF   ++AV   L+       + D    LL +M ERG      +Y
Sbjct: 542 KRDR-----------KFNPSSSAV-DALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSY 589

Query: 472 NALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           N L+  L ++Q+  DEA ++++ MV +G  P I T N+++         +   ++   M 
Sbjct: 590 NRLLSGLSRLQRW-DEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMS 648

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           + GCCPD  +   LIGG     R+  A K LEEM E G++
Sbjct: 649 KLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLE 688


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 184/423 (43%), Gaps = 36/423 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y  ++S+LGR    E    + +EM  +G++ S+ ++   +NA+    + + ++ + 
Sbjct: 147 NEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELL 206

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHR-FTPNLTTYTVLLGGWCR 360
           E M + +    + T N ++    R  L  E  L LF +++H    P+L TY  LL   C 
Sbjct: 207 ERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSA-CA 265

Query: 361 VKNLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            + L  EA  V+  MI+ G  P++  ++ ++E   K+GK      L + M+++G  P++ 
Sbjct: 266 ARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDIS 325

Query: 420 SYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           SY ++I                       C  NA+ Y+ L+  +G   R D V +L  +M
Sbjct: 326 SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQM 385

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +E    PD  TYN LI++        E V ++ ++V     P + TY  ++ +  + G +
Sbjct: 386 KESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLH 445

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E  +K+   M  +G  P   +Y+ LI          EA      M E G K+ +  YN  
Sbjct: 446 EDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSL 505

Query: 580 AADLSRAGRSYVLDELAQKMR----------FSGKFEVSNVLARWAETTKNRV-YRKDRI 628
               +R G     + +  +MR          FSG  E      ++ E  K  V   K R 
Sbjct: 506 IHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRC 565

Query: 629 ETD 631
           E D
Sbjct: 566 ELD 568



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 164/383 (42%), Gaps = 58/383 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAK-ERKK 297
           G   +  +Y ++++  GR  Q+ET + +LE M  E+   ++ T+   +NA A    + + 
Sbjct: 178 GVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEG 237

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
            + +F  M     +  + T N LL       L  EA+++F  + +    P +TTY+ ++ 
Sbjct: 238 LLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVE 297

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            + ++  L +   +  EM  +G+ PD+ ++N+++E   K+G   +A+ +F+ M+A G  P
Sbjct: 298 TFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVP 357

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN----RRRMDIV 452
           N  +Y+I++  + K                     +A  Y  LI  FG     +  + + 
Sbjct: 358 NASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 417

Query: 453 YDLLKE-------------------------------MEERGCPPDGLTYNALIKLMKIQ 481
           +DL+ E                               M  +G  P    Y+ LI+     
Sbjct: 418 HDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA 477

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
            + DEA+  +  M   G K TI TYN ++ ++ + G Y+    +   M   G   +  S+
Sbjct: 478 ALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSF 537

Query: 542 TVLIGGLISQDRSGEAYKYLEEM 564
           + +I G     +  EA K   EM
Sbjct: 538 SGIIEGYRQSGQYEEAIKAFVEM 560



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 14/257 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN   YT+++    R   L +   +++EM  +G    V ++  ++    + G+   +++L
Sbjct: 146 PNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLEL 205

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            E MK +  SPN+ +Y  +I   C +    +  L+              L  EM   G  
Sbjct: 206 LERMKRERVSPNILTYNTVI-NACARGDLDWEGLL-------------GLFAEMRHEGVQ 251

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN L+     + + DEA  ++K M+  G  P I TY+ I++++ + G  E    +
Sbjct: 252 PDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAML 311

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             EM   G  PD +SY VLI          EA    ++M   G       Y+       +
Sbjct: 312 LKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGK 371

Query: 586 AGRSYVLDELAQKMRFS 602
            GR   + EL  +M+ S
Sbjct: 372 HGRYDDVRELFLQMKES 388



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/392 (19%), Positives = 143/392 (36%), Gaps = 60/392 (15%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           +  G+  +  +YN ++    +    +  + + ++M   G + +  T+ I +N +      
Sbjct: 316 ESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRY 375

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVL 354
                +F  M +   +    T N L+   G     KE   LF D +     PN+ TY  L
Sbjct: 376 DDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGL 435

Query: 355 LGGWCRVKNLME-AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           +   C    L E A ++   M  KG  P   A++ ++E   +     +A+  F  M   G
Sbjct: 436 VFA-CGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVG 494

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
               + +Y  +I  F +                    +NA  ++ +I G+    + +   
Sbjct: 495 SKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAI 554

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
               EME+  C  D  T   ++ +     + DE+   + E+  SG  P++  Y M++  Y
Sbjct: 555 KAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVY 614

Query: 514 FQTG------------------------------------NYEMGRKVWDEMIRRGCCPD 537
            + G                                    N++M   V+D++   GC   
Sbjct: 615 AKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFG 674

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              Y  L+  L    + G A + L E  ++G+
Sbjct: 675 MRFYNTLLEALWWLGQKGRAARVLTEATKRGL 706



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 3/180 (1%)

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           IW  CK N  +YT +I+  G    ++   ++  EM  +G      +Y ALI         
Sbjct: 142 IW--CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQY 199

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTV 543
           + ++ + + M R    P I TYN ++ +  +   ++E    ++ EM   G  PD  +Y  
Sbjct: 200 ETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNT 259

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+    ++    EA    + M+E G+   +  Y+       + G+   +  L ++M   G
Sbjct: 260 LLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEG 319


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 172/385 (44%), Gaps = 24/385 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   ++  Y +++  L          ++L EM   G  + + TF   +         ++A
Sbjct: 189 GCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREA 248

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             + + M       GV T   LL+ L R +   EA+ +  ++      N+  +  ++GG 
Sbjct: 249 ARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL---NVVLFNTVIGGC 305

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
                L EA  ++  M  KG +PD   ++I++ GL K+G+   A++L   M+ KG +PNV
Sbjct: 306 LAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNV 365

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++  FCK                     N+  Y  +I       RMD    L++E
Sbjct: 366 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 425

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  +GC PD  +YN +I  +   +  +EA  +++ ++  G      TYN I+ +  + G 
Sbjct: 426 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 485

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++   ++  EMI  GC  D  SY  LI  +        +   LEEM EKG+K   + YN 
Sbjct: 486 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 545

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
             ++L +  R     EL+++M   G
Sbjct: 546 LISELCKERRVRDALELSKQMLNQG 570



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 161/381 (42%), Gaps = 29/381 (7%)

Query: 218 LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277
           L R R A R   R     G  PG      TY  ++  L R RQ +   +ML  + E   L
Sbjct: 242 LGRVREAARLVDRMMT-KGCMPGVM----TYGFLLQGLCRVRQADEARAMLGRVPE---L 293

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL 336
           ++  F   +    A  +  +A  ++E M     +    T + L+  L +  ++    +LL
Sbjct: 294 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 353

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +  K  F PN+ TYT++L  +C+     +   +  EM  KG   +   +N M+  L K 
Sbjct: 354 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 413

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           G+  +A+ L + M+++G +P++ SY  +I+  C                      N   Y
Sbjct: 414 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 473

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             +I       R      L KEM   GC  D ++YN LIK M      D ++ + +EM  
Sbjct: 474 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 533

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G KP   +YN+++    +        ++  +M+ +G  PD  +Y  LI GL        
Sbjct: 534 KGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHA 593

Query: 557 AYKYLEEMLEKGMKAPVLDYN 577
           A   LE++  + +   ++ YN
Sbjct: 594 ALNLLEKLHNENVHPDIITYN 614



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 20/276 (7%)

Query: 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           L  LGR+   +   LL    +H   P+   Y  ++   C    + EA  + NEM+  G  
Sbjct: 169 LCRLGRAD--EALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCA 226

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------- 431
            DV   + ++ G+  +G+  +A +L + M  KG  P V +Y  ++   C+          
Sbjct: 227 ADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM 286

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKM 483
                  N  ++  +I G     ++    +L + M  +GC PD  TY+ L+  L K+ ++
Sbjct: 287 LGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRI 346

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
              AVR+ +EM + GF P + TY +++ S+ + G ++  R + +EM  +G   +   Y  
Sbjct: 347 -GSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNG 405

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +I  L    R  EA   ++EM  +G    +  YN  
Sbjct: 406 MIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTI 441



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TY+ +M  L +  +  + V +L EM +KG   ++ T+ I +++F         
Sbjct: 325 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 384

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            A+ E M+           N ++  L +     EA  L  +++ +   P++ +Y  ++  
Sbjct: 385 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 444

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C  + + EA  ++  ++++G   + + +N ++  LL+ G+  DA++L + M   G S +
Sbjct: 445 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 504

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V SY  +I   CK             GN   +D    LL+EM E+G  P+ ++YN LI  
Sbjct: 505 VVSYNGLIKAMCKD------------GN---VDRSLVLLEEMAEKGIKPNNVSYNILISE 549

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  ++   +A+ + K+M+  G  P I TYN ++    + G       + +++      PD
Sbjct: 550 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 609

Query: 538 DNSYTVLI 545
             +Y +LI
Sbjct: 610 IITYNILI 617



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 23/282 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K GFA N  TY  ++    +   ++   ++LEEM  KGL L+ + +   + A       
Sbjct: 357 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 416

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            +A+ + + M        + + N ++ +L  ++  +EA+ +F+ L +     N  TY  +
Sbjct: 417 DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTI 476

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    R     +A R+  EMI  G   DVV++N +++ + K G    ++ L E M  KG 
Sbjct: 477 IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGI 536

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN  SY I+I + CK+                    +   Y  LI G      M    +
Sbjct: 537 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALN 596

Query: 455 LLKEMEERGCPPDGLTYNALIKL-MKIQKMPDEAVRIYKEMV 495
           LL+++      PD +TYN LI    K++ + D A+ + + M 
Sbjct: 597 LLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 638



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +YN+++  L    Q E    M E + E+G+++   T+   ++A       + AV + + M
Sbjct: 437 SYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 496

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
             +     V + N L++ + +      + +L +++  +   PN  +Y +L+   C+ + +
Sbjct: 497 ILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRV 556

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  +  +M+++G  PD+V +N ++ GL K+G    A+ L E +  +   P++ +Y I+
Sbjct: 557 RDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNIL 616

Query: 425 IWKFCK----QNAAVY----TCLITGFGNRRRMDIVYD 454
           I   CK     +AA+        +   G+RR M I+ D
Sbjct: 617 ISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPD 654



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R D    LL+ M   GC PD + Y  +I  +  Q    EA  +  EM+  G    ++T++
Sbjct: 174 RADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD 233

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +++     G      ++ D M+ +GC P   +Y  L+ GL    ++ EA   L  + E 
Sbjct: 234 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL 293

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                V+ +N         G+     EL + M   G
Sbjct: 294 N----VVLFNTVIGGCLAEGKLAEATELYETMGLKG 325



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP   T+    + +      DEA+ + + M R G  P    Y  ++ +    G       
Sbjct: 156 PPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAAT 215

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           + +EM+  GC  D N++  ++ G+    R  EA + ++ M+ KG    V+ Y      L 
Sbjct: 216 LLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 275

Query: 585 R 585
           R
Sbjct: 276 R 276



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 490 IYKEMV-RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +Y+ MV R    PT  T+ +  ++  + G  +    +   M R GC PD   Y  +I  L
Sbjct: 145 LYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHAL 204

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             Q    EA   L EML  G  A V  ++     +   GR      L  +M   G
Sbjct: 205 CDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKG 259


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 186/444 (41%), Gaps = 54/444 (12%)

Query: 216 DVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           DVL+R +H      A  +F    +   F H   TY  M+  L   R+ + +  +L++M  
Sbjct: 45  DVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 274 KGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           +G+  S + F   + ++  A   ++A+  F  M  ++ K  V   N +L+ L      + 
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
              ++  +K     PN+ TY +LL   C+   +  A ++  EM  KG  PD V++  ++ 
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 392 GLLKIGKR------------------------------SDAIKLFEVMKAKGPSPNVRSY 421
            L K+GK                                +A +L + M  KG  PNV SY
Sbjct: 225 SLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISY 284

Query: 422 TIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           T +I                     + C  N   +T LI GF  +       D    M  
Sbjct: 285 TTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIR 344

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P+ + YNAL+  +  ++   +AV ++ +M  +G  P + TY+ ++  Y + G+ + 
Sbjct: 345 EGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDG 404

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             +VW+ MI  GC P+  +YT ++  L       +AY  +E M  +      + +N F  
Sbjct: 405 ASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 582 DLSRAGRSYVLDELAQKMRFSGKF 605
            L  +GR     ++  +M  SG F
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCF 488



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 26/382 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y ++++ L  A   E  +++L +M  +G   ++ TF   +  F       +A
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEA 335

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           +  ++ M +      V   N L+  L   +   +A  +F++++ +   PN+ TY+ L+ G
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  +L  A  VWN MI  G  P+VVA+  M++ L +    + A  L E M+ +   PN
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 418 VRSYTIMI----------WKF----------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++   I          W            C  N   Y  L+      RR    + L+K
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +ME RG   + +TYN +I       M  EA+ +  +MV  G KP   T N+++ +Y + G
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
              +  ++ D +      PD  +YT LI G+ +     EA  YL  ML +G+   V  +N
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWN 635

Query: 578 KFA----ADLSRAGRSYVLDEL 595
                  +++  +G    LD +
Sbjct: 636 VLVRHLFSNMGHSGAVQFLDAV 657



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 166/386 (43%), Gaps = 56/386 (14%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
           F  +   YN++++ + +   FE    +L+EM  KG+  ++ ++   +NA + A   + ++
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           A+   M    F  G                               +PNL T+T L+ G+ 
Sbjct: 302 AVLAKM----FARGC------------------------------SPNLHTFTSLIKGFF 327

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                 EA   W+ MI +G  P+VVA+N ++ GL       DA+ +F  M+  G  PNVR
Sbjct: 328 LKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVR 387

Query: 420 SYTIMI---------------WKF-----CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y+ +I               W +     C  N   YTC++         +  Y L++ M
Sbjct: 388 TYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM 447

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +   CPP+ +T+N  IK +      D A++++ +M  SG  P   TYN ++ S  +   +
Sbjct: 448 QVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRF 507

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                +  +M  RG   +  +Y  +I G       GEA + L +M+ +G K   +  N  
Sbjct: 508 GEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIV 567

Query: 580 AADLSRAGRSYVLDELAQKMRFSGKF 605
                + G+  +  +L  ++  +GK+
Sbjct: 568 IDAYCKQGKVNIAIQLMDRLS-AGKW 592



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 137/318 (43%), Gaps = 22/318 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N   YN++M  L   R     VS+  +M   G   ++ T+   ++ +A A +  
Sbjct: 344 REGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLD 403

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL 355
            A  ++  M  +     V    C+++ L R+ +  +A  L + ++     PN  T+   +
Sbjct: 404 GASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C    +  A +V+++M + G  P+   +N +L+ LLK  +  +A  L + M+ +G  
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 416 PNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDL 455
            N+ +Y  +I+ +C                    K +A     +I  +  + +++I   L
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           +  +      PD + Y +LI  +      +EA+   + M+  G  P + T+N++++  F 
Sbjct: 584 MDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFS 643

Query: 516 TGNYEMGRKVWDEMIRRG 533
              +    +  D ++  G
Sbjct: 644 NMGHSGAVQFLDAVLGSG 661



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 17/263 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N   Y  M+ +L R   F     ++E M  E    +  TF   +     +     A
Sbjct: 416 GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWA 475

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F+ M          T N LL++L + +   EA  L   ++HR    NL TY  ++ G
Sbjct: 476 IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYG 535

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C    L EA  +  +M+ +G KPD +  NI+++   K GK + AI+L + + A    P+
Sbjct: 536 YCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPD 595

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +YT +I   C           T  G      IVY  L+ M   G  P+  T+N L++ 
Sbjct: 596 IIAYTSLISGIC-----------THIGVEEA--IVY--LRRMLSEGISPNVATWNVLVRH 640

Query: 478 MKIQKMPDEAVRIYKEMVRSGFK 500
           +        AV+    ++ SGF+
Sbjct: 641 LFSNMGHSGAVQFLDAVLGSGFE 663


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G      TYN+++  + R+   E       EM   GLL  + T+   +N +  A   K+A
Sbjct: 332 GIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEA 391

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + +F  + +      V T N LL+   R    +EA+    ++ +    P+++TYT+L+ G
Sbjct: 392 LWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNG 451

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +V+NL      ++EM+ KG +PD  A+N  +   L +G  S+A +L EVM ++G S +
Sbjct: 452 SRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSD 511

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y I +   CK             GN   +   Y L  +M   G  PD +TY  LI  
Sbjct: 512 TVTYNIFLDGLCKS------------GN---LKDAYVLWMKMVSDGLQPDCITYTCLIHA 556

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA  I+  M+ SG  P+  TY + + +Y + GN       + +M+  G  P+
Sbjct: 557 HCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPN 616

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + +Y VLI  L    R+  AY++  EMLE+G+
Sbjct: 617 EVTYNVLIHALCRMGRTNLAYQHFHEMLERGL 648



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 158/377 (41%), Gaps = 25/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKG---LLSMETFKIAMNAFAAAKERKKAVAIFE 303
           TYN+++    R  + +    +L EM  +    L S  T+ + +N  A   E +KA  + +
Sbjct: 233 TYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVD 292

Query: 304 LMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
            M   K KA   T N L+     R  + K   L  +       P + TY  ++ G  R  
Sbjct: 293 RMRMSK-KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSG 351

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           N+  A   + EM   G  PD++ +N ++ G  K G   +A+ LF  +K  G +P+V +Y 
Sbjct: 352 NVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYN 411

Query: 423 I--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I                    M+ + C+ + + YT L+ G    R + +V +   EM  +
Sbjct: 412 ILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSK 471

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD   YN  I    I     EA ++ + M+  G      TYN+ +    ++GN +  
Sbjct: 472 GLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDA 531

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +W +M+  G  PD  +YT LI     + R  EA    + ML  G+    + Y  F   
Sbjct: 532 YVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHA 591

Query: 583 LSRAGRSYVLDELAQKM 599
             R G  Y      QKM
Sbjct: 592 YCRRGNLYSAYGWFQKM 608



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 164/365 (44%), Gaps = 23/365 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           TYN +++ L R  + E    +++ M      S  TF   +  + A    +KA A+   M 
Sbjct: 270 TYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEME 329

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
                  V T N ++  + RS   + A++ F +++     P+L TY  L+ G+C+  NL 
Sbjct: 330 NEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLK 389

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI-- 423
           EA  ++ ++   G  P V+ +NI+L+G  ++G   +A +  + M  +G  P+V +YTI  
Sbjct: 390 EALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILM 449

Query: 424 ------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                             M+ K  + +   Y   I+           + L + M  RG  
Sbjct: 450 NGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGIS 509

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            D +TYN  +  L K   + D  V ++ +MV  G +P   TY  ++ ++ + G     R 
Sbjct: 510 SDTVTYNIFLDGLCKSGNLKDAYV-LWMKMVSDGLQPDCITYTCLIHAHCERGRLREARD 568

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++D M+  G  P   +YTV I     +     AY + ++MLE+G++   + YN     L 
Sbjct: 569 IFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALC 628

Query: 585 RAGRS 589
           R GR+
Sbjct: 629 RMGRT 633



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 24/239 (10%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAV 299
           FA+N+R    +  ILG   +      + E M  +G+ S   T+ I ++    +   K A 
Sbjct: 478 FAYNTRISAEL--ILGSTSE---AFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAY 532

Query: 300 AIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
            ++  M     +    T  CL+  +  R +L +EA+ +FD  L     P+  TYTV +  
Sbjct: 533 VLWMKMVSDGLQPDCITYTCLIHAHCERGRL-REARDIFDGMLVSGLPPSAVTYTVFIHA 591

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  NL  A   + +M+++G +P+ V +N+++  L ++G+ + A + F  M  +G SPN
Sbjct: 592 YCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN 651

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
             +YT++I   CK+            GN      +Y    EM + G  PD  T+NAL K
Sbjct: 652 KYTYTLLIDGNCKE------------GNWEEAIRLYS---EMHQHGIHPDHCTHNALFK 695



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 96/254 (37%), Gaps = 51/254 (20%)

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
            + EM   G  P +   N++L  L    +  D   ++  M   G  P++ +Y  ++  F 
Sbjct: 183 AFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFF 242

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPDGLTYNALI-------KLMKI 480
           ++                R+D    LL+EME R  GC P  +TYN +I       +L K 
Sbjct: 243 REG---------------RVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKA 287

Query: 481 QKMPD---------------------------EAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            ++ D                           +A  +  EM   G  PT+ TYN I+   
Sbjct: 288 AQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGM 347

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
           F++GN E  R  + EM   G  PD  +Y  LI G        EA     ++   G+   V
Sbjct: 348 FRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSV 407

Query: 574 LDYNKFAADLSRAG 587
           L YN       R G
Sbjct: 408 LTYNILLDGYCRLG 421



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           ++EM   G  P I   N+++++      ++  R V+ EM++ G  P   +Y  L+     
Sbjct: 184 FREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFR 243

Query: 551 QDRSGEAYKYLEEMLEK--GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
           + R  +A K L EM  +  G     + YN     L+R G      +L  +MR S K
Sbjct: 244 EGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKK 299


>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Brachypodium distachyon]
          Length = 501

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 184/404 (45%), Gaps = 35/404 (8%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERF---------RHARRPAFR 230
           E++R+ K++ +      +    LDE  + +S+ LV +VL R              R A++
Sbjct: 103 EVDRIVKILLQ-DGPGFSARQALDEMNLRVSNELVREVLSRIVVSVDSVNRERFPRLAYK 161

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           FF WAG + G+ H++  YN +M +  +  + + M  +LEEM E GL +S  TF + +   
Sbjct: 162 FFLWAGQQEGYHHSTGMYNLVMKVFAQCGEVKAMWRLLEEMTENGLSISARTFHLLICTC 221

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF----- 344
             A  R++ V  F   + + ++   ++ N +L  L    L  E   L + +  +      
Sbjct: 222 GQAGLRRRLVERFIKSSSFNYRPFRNSFNAILHTL----LTIEQYSLIEWVHQKMLMEGH 277

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P++ TY +++     +  L +  R+ +EM   G  PD+  +NI+L  L K  K   A+ 
Sbjct: 278 SPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAALN 337

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L   M   G  P+V                 +T LI G      ++       EM ++GC
Sbjct: 338 LLNYMSDVGCVPSVLH---------------FTNLIDGLSRAGNLEACKYFFDEMMKKGC 382

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD + Y  +I         +EA +++ +M+  G  P ++TYN +++     G ++    
Sbjct: 383 EPDVVCYTVMITGYVAAAELEEAQKLFDDMLVRGKLPNVYTYNTMIRGLCIVGEFDKACS 442

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +  +M  RGC P+ + Y+ L+  L +  +  EA   ++ M  KG
Sbjct: 443 MLKDMDLRGCTPNFSVYSTLVCRLRNAGKDAEANNVIKYMANKG 486


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 168/364 (46%), Gaps = 20/364 (5%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  +Y SM+ +L   GR  + E + + +E   E+ +     +   +  + +A   +
Sbjct: 13  GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME--AERSVPCAYAYNTMIMGYGSAGRFE 70

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A  + E + +      V + N +L  LG+ +   EA  LF+ +K    PN +TY +++ 
Sbjct: 71  DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIID 130

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C    + EA R+ +EM      P+++  NIM++ L K  K  +A K+FE    +G   
Sbjct: 131 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG--- 187

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  +   Y  LI G G + ++D  Y L ++M + G   + + Y +LI+
Sbjct: 188 ------------CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 235

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
              I    ++  +I+KE++R G KP +   N  M   F+ G  E GR +++++   G  P
Sbjct: 236 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY++LI GL    ++ E       M ++G       YN       ++G+ +   E+ 
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 355

Query: 597 QKMR 600
           ++M+
Sbjct: 356 EEMK 359



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 184/403 (45%), Gaps = 24/403 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+ N++VD L + R     A++ F  A  + G   +  TY S++  LG+  Q +    + 
Sbjct: 158 LTVNIMVDRLCKARKLEE-AYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVDEAYRLF 215

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           E+M + G   +   +   +  F     ++    IF+ + +   K  +  +N  ++ + ++
Sbjct: 216 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA 275

Query: 328 KLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              ++ +++F+ ++ + F P++ +Y++L+ G  +     E   +++ M  +GF  D  A+
Sbjct: 276 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 335

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------------- 430
           N +++G  K GK   A ++ E MK K   P V +Y  ++    K                
Sbjct: 336 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 395

Query: 431 ----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N  +Y+ LI GFG   R+D  Y +L+EM ++G  P+  T+N+L+  +   +  +E
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 455

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+  ++ M      P  +TY++++    +   Y      W +M ++G  P+  +YT +I 
Sbjct: 456 ALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMIS 515

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           GL       +AY   E     G       +N     +S A R+
Sbjct: 516 GLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRA 558



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 175/401 (43%), Gaps = 57/401 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           NS TYN ++ +L    + E    +L+EM    L  ++ T  I ++    A++ ++A  IF
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
           E  ++        T   L++ LG+     EA  LF+K L      N   YT L+  +   
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               +  +++ E+I +G KPD+   N  ++ + K G+      +FE +++ G  P+VRSY
Sbjct: 241 GRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 300

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           +I+I    K                     +A  Y  ++ GF    ++   Y++L+EM+E
Sbjct: 301 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 360

Query: 462 RGCPPDGLTYNALIK-LMKIQKMP----------------------------------DE 486
           +   P   TY A++  L KI ++                                   DE
Sbjct: 361 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDE 420

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  I +EM++ G  P ++T+N ++ +  +          +  M    C P+  +Y++LI 
Sbjct: 421 AYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILIN 480

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           GL    +  +A+ + ++M ++G+   V+ Y    + L++ G
Sbjct: 481 GLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 521



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 21/242 (8%)

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A + ++E+  +G KPD V++  M+  L K G+  +A +LF  M+A+   P   +Y  MI 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 427 KF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            +                    C  +   +  ++T  G +R++D    L + M ++   P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEP 120

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           +  TYN +I ++ +    +EA RI  EM  +   P + T N+++    +    E   K++
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +   +RGC PD  +Y  LI GL  + +  EAY+  E+ML+ G  A  + Y     +    
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 587 GR 588
           GR
Sbjct: 241 GR 242



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+++++  L +   AR  +  F   A  + GFA ++R YN+++    ++ +      +LE
Sbjct: 299 SYSILIHGLTKAGQARETSNIFH--AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 356

Query: 270 EMGEK--------------GLLSMETFKIAMNAFAAAKER-------------------- 295
           EM EK              GL  ++    A   F  AK +                    
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 416

Query: 296 --KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYT 352
              +A  I E M K      V T N LL+ L +++   EA + F  +K  +  PN  TY+
Sbjct: 417 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 476

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L+ G CRV+   +A   W +M  +G  P+VV +  M+ GL K+G  +DA  LFE  KA 
Sbjct: 477 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536

Query: 413 GPSPNVRSYTIMIWKFCKQNAAV 435
           G  P+  S+  +I      N A+
Sbjct: 537 GGIPDAASFNALIEGMSNANRAM 559



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           + +    E++ +G  PD ++Y ++I ++       EA  ++ +M      P  + YN ++
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             Y   G +E   K+ + +  RGC P   S+  ++  L  + +  EA   L E+++K  +
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS-LFEVMKKDAE 119

Query: 571 APVLDYNKFAADLSRAGR---SY-VLDELAQKMRFSGKFEVSNVLARWAETTK 619
                YN     L   GR   +Y +LDE+     F     V+ ++ R  +  K
Sbjct: 120 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 172


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 166/379 (43%), Gaps = 23/379 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKIT 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K      V T   LL  L       EA   F ++ +    PN+ T+T L+ G CR   ++
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIM 424
           EA  + + M++ G +P  + +  +++G+ K G    A+ L   M+      PNV  Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   Y  +I GF +  R      LL+EM ER  
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYNALI     +    EA  +Y EM+  G  P   TYN ++  + +    +    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 381

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M  +GC PD  ++T LI G     R  +  + L EM  +G+ A  + YN       
Sbjct: 382 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFC 441

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G      +L+Q+M  SG
Sbjct: 442 LVGDLNAALDLSQQMISSG 460



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 180/414 (43%), Gaps = 69/414 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 303 ELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
             M +       V   + ++++L +     +AQ LF +++ +   P+L TY  ++ G+C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A ++  EM+++   PDVV +N ++   +K GK  +A +L++ M  +G  PN  +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTIT 362

Query: 421 YTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y  MI  FCKQ+                       +T LI G+   +R+D   +LL EM 
Sbjct: 363 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 422

Query: 461 ERGCPPDGLTYNALI-----------------KLMKIQKMPD------------------ 485
            RG   + +TYN LI                 +++     PD                  
Sbjct: 423 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 482

Query: 486 EAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +A+ ++K M +S           G +P + TYN+++      G +    ++++EM  RG 
Sbjct: 483 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGI 542

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y+ +I GL  Q R  EA +    M  K     V+ +N       +AGR
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR 596



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 150/336 (44%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F LM
Sbjct: 327 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 386

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   V T   L++   G  ++    +LL +  +     N  TY  L+ G+C V +L
Sbjct: 387 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 446

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----------G 413
             A  +  +MI  G  PD+V  N +L+GL   GK  DA+++F+ M+             G
Sbjct: 447 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG 506

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V +Y I               LI G  N  +     +L +EM  RG  PD +TY++
Sbjct: 507 VEPDVLTYNI---------------LICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M    F P + T+N ++  Y + G  + G +++ EM RRG
Sbjct: 552 MIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              D   Y  LI G         A    +EM+  G+
Sbjct: 612 IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 647



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 161/395 (40%), Gaps = 33/395 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y++++  L +  +     ++  EM EKG+   + T+   +  F ++     A  + 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M + K    V T N L+    +     EA  L+D++  R   PN  TY  ++ G+C+ 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 373

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  ++  M  KG  PDV     +++G     +  D ++L   M  +G   N  +Y
Sbjct: 374 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTY 433

Query: 422 TIMIWKFC---KQNAA---------------VYTC--LITGFGNRRRMDIVYDLLKEMEE 461
             +I  FC     NAA               + TC  L+ G  +  ++    ++ K M++
Sbjct: 434 NTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 493

Query: 462 -----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
                       G  PD LTYN LI  +  +    EA  +Y+EM   G  P   TY+ ++
Sbjct: 494 SKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               +    +   +++  M  +   P+  ++  LI G     R  +  +   EM  +G+ 
Sbjct: 554 DGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           A  + Y        + G      ++ Q+M  SG +
Sbjct: 614 ADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 648



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 21/292 (7%)

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L     L  D L+ R  P++  +  L+G   R++       ++ +M  K  + D+ + NI
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------------------- 428
           +++      K   A+  F  +   G  P+V ++T ++                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C+ N   +T L+ G     R+     LL  M E G  P  +TY  ++  M  +     A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 489 RIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
            + ++M   S   P +  Y+ I+ S  + G +   + ++ EM  +G  PD  +Y  +I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             S  R  +A + L+EMLE+ +   V+ YN       + G+ +   EL  +M
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEM 351



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 33/264 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + +  T+ +++     A++ +  + +L EM  +GL++   T+   ++ F    +   A
Sbjct: 390 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T N LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 450 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 509

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 510 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
             M +K  SPNV ++  +I  +CK                     +A +Y  LI GF   
Sbjct: 570 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 629

Query: 447 RRMDIVYDLLKEMEERGCPPDGLT 470
             ++   D+ +EM   G  PD +T
Sbjct: 630 GNINGALDIFQEMISSGVYPDTIT 653



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 52/103 (50%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +S+L +  Q+        F+PN+ T+  L+ G+C+   + +   ++ EM  +G   D + 
Sbjct: 559 QSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 618

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           +  ++ G  K+G  + A+ +F+ M + G  P+  +   M+  F
Sbjct: 619 YITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 661


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G      TYN+++  L +    E      +EM  KGLL  + T+   +N +  A   K+A
Sbjct: 330 GIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQA 389

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F  + +      V T N L++   R    + A+ L +++      P++ TYT+L+ G
Sbjct: 390 LCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNG 449

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C V+NL      ++EM+ KG +PD  A+N  +   L IG  ++A +L E M  +G S +
Sbjct: 450 SCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSD 509

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y ++I   CK  +               +   Y L  +M   G   D +TY  LI  
Sbjct: 510 TVTYNVLIDGLCKTGS---------------LKDAYVLWMKMVTDGLRLDCVTYTCLIHA 554

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA  I+  MV SG  P++ TY + + +Y + GN  +    + +M+  G  P+
Sbjct: 555 HCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPN 614

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           + +Y VL+  L    R+  AY++  EMLE+G+
Sbjct: 615 EVTYNVLMHALCRMGRTESAYQHFHEMLERGL 646



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 164/381 (43%), Gaps = 25/381 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEK--GLLSME-TFKIAMNAFAAAKERKKAVAIFE 303
           TYN+++    +A + +  V++L++M  +  G L  + T+ + +N  A   E +KA  + +
Sbjct: 231 TYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVD 290

Query: 304 LMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
           +M   K KA   T N L+  L  R  + K   LL +       P + TY  L+ G  +  
Sbjct: 291 IMRLSK-KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTG 349

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           N   A   ++EM  KG  PD++ +N ++ G  K G    A+ LF  +K  G  P V +Y 
Sbjct: 350 NAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYN 409

Query: 423 IMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  +C+                     +   YT L+ G    R + +V     EM  +
Sbjct: 410 ILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSK 469

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD   YN  I           A ++ +EM+  G      TYN+++    +TG+ +  
Sbjct: 470 GLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDA 529

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +W +M+  G   D  +YT LI     + R  EA    + M+  G+   V+ Y  F   
Sbjct: 530 YVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHT 589

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
             R G  Y+     +KM   G
Sbjct: 590 YCRRGNLYLAYGWFRKMLEEG 610



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 23/372 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   N  TYN +++ L R  + E    +++ M      S  T+   +    A    +KA 
Sbjct: 261 GCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAG 320

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A+   M        V T N L++ L ++   + AQ+ FD+++ +   P+L TY  L+ G+
Sbjct: 321 ALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGY 380

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+  NL +A  ++ ++   G  P V+ +NI+++G  ++G    A +L E M  +   P+V
Sbjct: 381 CKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDV 440

Query: 419 RSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YTI++   C                    + +   Y   I+       +   + L +E
Sbjct: 441 CTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREE 500

Query: 459 MEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           M  RG   D +TYN LI  L K   + D  V ++ +MV  G +    TY  ++ ++ + G
Sbjct: 501 MMLRGISSDTVTYNVLIDGLCKTGSLKDAYV-LWMKMVTDGLRLDCVTYTCLIHAHCERG 559

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                + ++D M+  G  P   +YT+ I     +     AY +  +MLE+G++   + YN
Sbjct: 560 RLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYN 619

Query: 578 KFAADLSRAGRS 589
                L R GR+
Sbjct: 620 VLMHALCRMGRT 631



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 29/314 (9%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLL 355
           + ++ F+ M ++     V   NC+L  L  +    + + ++ D L+    P++ TY  LL
Sbjct: 177 QCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLL 236

Query: 356 GGWCRVKNLMEAGRVWNEMIDK--GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM---- 409
             +C+   + +A  +  +M  +  G  P+ V +N+++ GL + G+   A +L ++M    
Sbjct: 237 DSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSK 296

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAV---------------YTCLITGF---GNRRRMDI 451
           KA   + N     ++   F ++  A+               Y  LI G    GN     +
Sbjct: 297 KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQV 356

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
            +D   EM  +G  PD +TYN+LI          +A+ ++ ++ R+G  PT+ TYN+++ 
Sbjct: 357 KFD---EMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILID 413

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y + G+ E  R++ +EM    C PD  +YT+L+ G            + +EML KG++ 
Sbjct: 414 GYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEP 473

Query: 572 PVLDYN-KFAADLS 584
               YN + +A+L+
Sbjct: 474 DCFAYNTRISAELT 487



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 20/235 (8%)

Query: 359 CRVKNLMEAGR------VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           C ++ L +A R      V+++M+  G +P +  +N +L+   K G+   A+ L + M+A+
Sbjct: 199 CVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEAR 258

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                           C  N   Y  +I G   +  ++    L+  M          TYN
Sbjct: 259 AAG-------------CLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSK-KASAFTYN 304

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +  +   ++A  +  EM   G  PT+ TYN ++   F+TGN E  +  +DEM  +
Sbjct: 305 PLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAK 364

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           G  PD  +Y  LI G        +A     ++   G+   VL YN       R G
Sbjct: 365 GLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLG 419



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAV 299
           FA+N+R  ++ ++I      F+    + EEM  +G+ S   T+ + ++        K A 
Sbjct: 476 FAYNTRI-SAELTIGAITNAFQ----LREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAY 530

Query: 300 AIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            ++  M     +    T  CL+  +  R +L  EA+ +FD +     +P++ TYT+ +  
Sbjct: 531 VLWMKMVTDGLRLDCVTYTCLIHAHCERGRL-IEAKNIFDGMVASGLSPSVVTYTIFIHT 589

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  NL  A   + +M+++G +P+ V +N+++  L ++G+   A + F  M  +G  PN
Sbjct: 590 YCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPN 649

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
             +YT++I   CK+   V+                  L  EM ++G  PD  T+NAL K
Sbjct: 650 KYTYTLLIDGSCKEGNWVHA---------------IRLYCEMHQKGIHPDHCTHNALFK 693


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 184/372 (49%), Gaps = 26/372 (6%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           RTY  ++  L  + +    +++++EM EKG+  ++ T+ + +++  +  + +KA  +   
Sbjct: 324 RTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQ 383

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M +      V T N L+    +  + ++A  + + ++ R   PN  TY  L+ G+C+ +N
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RN 442

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  V N+M+++   PDVV +N +++G  + G    A +L  +M  +G  P+  +YT 
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTS 502

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           MI   CK                     N  +YT LI G+    +++  + +L++M  + 
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKN 562

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P+ LT+NALI  +       EA  + ++MV+   +PT+ T  +++    + G+++   
Sbjct: 563 CLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAY 622

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN---KFA 580
           + + +M+  G  PD ++YT  I     + R  +A   + +M E G+   +  Y+   K  
Sbjct: 623 RRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGY 682

Query: 581 ADLSRAGRSYVL 592
            DL R   ++V+
Sbjct: 683 GDLGRTNSAFVV 694



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 161/363 (44%), Gaps = 41/363 (11%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285
           + A  F  W    P + H+  +Y S++++L                G  G++    FKI 
Sbjct: 104 KTALNFSHWISQNPRYKHSVYSYASLLTLLINN-------------GYVGVV----FKIR 146

Query: 286 MNAFAAAKERKKAVAIFEL---MNK-----YKFKAGVDTINCLLENLGRSKLPKEA-QLL 336
           +    +       + + +L   MNK      K+K  +   N LL +L R  L  E  Q+ 
Sbjct: 147 LLMIKSCDSVADTLFVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            + L+ +  PN+ TY  ++ G+C+V N+ EA +  + +++ G  PD   +  ++ G  + 
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQR 266

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
                A K+F+ M  KG               C++N   YT LI G    RR+D   DL 
Sbjct: 267 KDLDSAFKVFKEMPLKG---------------CRRNEVAYTHLIHGLCVERRIDEAMDLF 311

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            +M++  C P   TY  LIK +   +   EA+ + KEM   G KP IHTY +++ S    
Sbjct: 312 VKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQ 371

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
              E  R++  +M+ +G  P+  +Y  LI G   +    +A   +E M  + ++     Y
Sbjct: 372 CKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTY 431

Query: 577 NKF 579
           N+ 
Sbjct: 432 NEL 434



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 166/433 (38%), Gaps = 76/433 (17%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TYNS++    R+  F++   +L  M ++GL+    T+   +++   +K  ++A  +F+ +
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSL 523

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNL 364
            +      V     L++   ++    EA L+ +K L     PN  T+  L+ G C    L
Sbjct: 524 EQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKL 583

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  +  +M+    +P V    I++  LLK G    A + F+ M + G  P+  +YT  
Sbjct: 584 KEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTF 643

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I  +C++                    +   Y+ LI G+G+  R +  + +LK M + GC
Sbjct: 644 IQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGC 703

Query: 465 PPDGLTYNALIKL---MKIQKMP---------------DEAVRIYKEMVRSGFKPTIHTY 506
            P   T+ +LIK    MK  K+                D  V + ++MV  G  P   +Y
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSY 763

Query: 507 NMIMKSYFQTGNYEMGRKVWD------------------------------------EMI 530
             +M    + GN  +  KV+D                                    +MI
Sbjct: 764 EKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMI 823

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
             G  P   S  +LI  L  +          + +L+ G     L +      + + G   
Sbjct: 824 CVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVE 883

Query: 591 VLDELAQKMRFSG 603
              EL   M  +G
Sbjct: 884 AFYELFNVMEKNG 896



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           FG    M  VY  ++ +E++ CP +  TYN ++         +EA +    +V +G  P 
Sbjct: 196 FGLVDEMKQVY--MEMLEDKVCP-NIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPD 252

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TY  ++  Y Q  + +   KV+ EM  +GC  ++ +YT LI GL  + R  EA     
Sbjct: 253 FFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFV 312

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +M +      V  Y      L  + R      L ++M   G
Sbjct: 313 KMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKG 353



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 333 AQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           A+ +FD ++ +   +P+   +  LL   C+++   EA +V ++MI  G  P + +  I++
Sbjct: 779 AEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILI 838

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
             L K G++     +F+ +   G   +      + WK           +I G G +  ++
Sbjct: 839 CRLYKKGEKERGTSVFQNLLQCGYYDDE-----LAWKI----------IIDGVGKQGLVE 883

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIK 476
             Y+L   ME+ GC     TY+ LI+
Sbjct: 884 AFYELFNVMEKNGCTFSSQTYSLLIE 909


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 31/370 (8%)

Query: 228 AFRFF--CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKI 284
           AF+F+   +  +  GF  N  TYN ++  L +  Q +  V    EM  K     + T+  
Sbjct: 155 AFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYST 214

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHR 343
            MN     +   +AV + + M          T N L++ L ++  L + A+L+ +     
Sbjct: 215 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 274

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             PN  TY  L+ G C    L +A  +  +M+     P+ V +  ++ GL+K  +  D +
Sbjct: 275 CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGV 334

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            +   M+ +G                K N  +Y+ LI+G     + +    L KEM E+G
Sbjct: 335 HILMSMEERGQ---------------KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG 379

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P+ + Y A I  +   + PDEA  I +EM+  GF P   TY+ +MK +F+ G+ +   
Sbjct: 380 CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAI 439

Query: 524 KVWDEMIRRG------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            VW EM+ +       CC      +VL+ GL    R  EA      ML +G+K  V+ Y+
Sbjct: 440 LVWKEMMSQDMRHNVVCC------SVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYS 493

Query: 578 KFAADLSRAG 587
                L   G
Sbjct: 494 SMIKGLCDVG 503



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 159/369 (43%), Gaps = 26/369 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIF--- 302
           T+  ++     +R+F  +  +L+ M  +G +  ET F +   A   A    +AV  F   
Sbjct: 67  TFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRM 126

Query: 303 --ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
             +L  K   K+    +N +++    S   K    +F      F PNL TY +++   C+
Sbjct: 127 ANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCK 186

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           +  +  A   + EM  K   PDV  ++ ++ GL K  +  +A+ L + M+A+G  PN  +
Sbjct: 187 LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVT 246

Query: 421 YTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           + ++I                     K C  N   Y  LI G   + ++D    LL++M 
Sbjct: 247 FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMV 306

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
              C P+ +TY  +I  +  Q+  ++ V I   M   G K   + Y+ ++   F+ G  E
Sbjct: 307 SSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSE 366

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++W EM  +GC P+   Y   I GL   ++  EA   L+EML KG       Y+   
Sbjct: 367 NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLM 426

Query: 581 ADLSRAGRS 589
               + G S
Sbjct: 427 KGFFKKGDS 435



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 38/377 (10%)

Query: 233 CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292
           C     PG A N   ++ M + L   +  ++  S+L  + ++G  S   FK  ++ F A 
Sbjct: 110 CGKAHLPGEAVN--FFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSY-AFKFYLHVFGA- 165

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTY 351
                        N   F+  + T N +++ L +      A   F ++  +   P++ TY
Sbjct: 166 -------------NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTY 212

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + L+ G C+ + + EA  + +EM  +G  P+ V  N++++ L K G  S A KL + M  
Sbjct: 213 STLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFL 272

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
           KG  PN  +Y  +I   C +                    N   Y  +I G   +RR + 
Sbjct: 273 KGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAED 332

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              +L  MEERG   +   Y++LI  +  +   + AVR++KEM   G KP +  Y   + 
Sbjct: 333 GVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFID 392

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              +    +    +  EM+ +G  P+  +Y+ L+ G   +  S +A    +EM+ + M+ 
Sbjct: 393 GLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRH 452

Query: 572 PVLDYNKFAADLSRAGR 588
            V+  +     L  +GR
Sbjct: 453 NVVCCSVLLNGLCESGR 469



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 54/287 (18%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TY ++++ L + R+ E  V +L  M E+G  + E  +   ++      + + AV ++
Sbjct: 313 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLW 372

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYT--------- 352
           + M +   K  V      ++ L R + P EA+ +L + L   F PN  TY+         
Sbjct: 373 KEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 432

Query: 353 --------------------------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                                     VLL G C    L EA  VW  M+ +G KPDVVA+
Sbjct: 433 GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAY 492

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPS--PNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           + M++GL  +G     +KLF  M+ + P   P+V +Y I+    C+Q+            
Sbjct: 493 SSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQD------------ 540

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N  R     DLL  M + GC PD LT N  ++ ++ +  P +  R++
Sbjct: 541 NLTR---AIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLF 584



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 25/216 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  N+ TY+S+M    +    +  + + +EM  + +  ++    + +N    +   ++A
Sbjct: 414 GFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREA 473

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---HRFTPNLTTYTVLL 355
           + ++  M     K  V   + +++ L       +   LF +++    +  P++ TY +L 
Sbjct: 474 LTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILF 533

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL---------------------L 394
              CR  NL  A  + N M+D+G  PD +  NI LE L                     L
Sbjct: 534 NALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLL 593

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           K  ++  A+++ E M  +   P   +++ +I + CK
Sbjct: 594 KRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCK 629


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 166/362 (45%), Gaps = 19/362 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY +++  LGR      + S+L EM E+GL  +++ +   + A    +   +A+A+   M
Sbjct: 348 TYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQM 407

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
              +F   V T N L+    R    +EA +LL + ++    PN  +YT L+ G+C    +
Sbjct: 408 VASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEV 467

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           M A  +  EMI +G  PDVV    ++ GL+  G+  +A+ + E M  +   P+       
Sbjct: 468 MVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPD------- 520

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKM 483
                   A +Y  LI+G   +R +    +LL EM E+   PD   Y  LI   ++  K+
Sbjct: 521 --------ANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKL 572

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            D A +I++ M   G    I  YN ++K Y ++G           M + GC PD+ +YT 
Sbjct: 573 SD-ARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTT 631

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           LI G   +     A ++L +M+++  K  ++ Y          G +   + L   M+  G
Sbjct: 632 LIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEG 691

Query: 604 KF 605
            F
Sbjct: 692 LF 693



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 16/275 (5%)

Query: 314 VDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V T   ++  LGR S L K   LL++  +   +PN+  Y  ++   C+ ++  +A  V N
Sbjct: 346 VVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLN 405

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           +M+   F PDVV  N ++    + G   +A+KL      +   PN  SYT +I  FC   
Sbjct: 406 QMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCV-- 463

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                        R  + +  DLL EM  RG  PD +T  ALI  + +    DEA+ + +
Sbjct: 464 -------------RGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVRE 510

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           +M      P  + YN+++    +       + +  EM+ +   PD   YT LI G I  D
Sbjct: 511 KMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSD 570

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +  +A K  E M EKG    ++ YN       ++G
Sbjct: 571 KLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSG 605



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 161/421 (38%), Gaps = 72/421 (17%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAV 299
           F  +  T+N++++   R    E  + +L E   + L   + ++   ++ F    E   A 
Sbjct: 412 FDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVAS 471

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
            +   M        V T+  L+  L  S    EA ++ +K+  R   P+   Y VL+ G 
Sbjct: 472 DLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGL 531

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ + L  A  +  EM+++  +PD   +  +++G ++  K SDA K+FE M+ KG   ++
Sbjct: 532 CKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDI 591

Query: 419 RSYTIMIWKFCKQ---NAAV-----------------YTCLITGFGNRRRMDIVYDLLKE 458
            +Y  MI  +CK    N AV                 YT LI G+  +  +      L +
Sbjct: 592 VAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCD 651

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M +R C P+ +TY +LI         D A  ++  M   G  P +  Y +++ S F+   
Sbjct: 652 MMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDK 711

Query: 519 YEMGRKVWDEMIRRGCCPDD---------------------------------------- 538
                  ++ M+   C P+D                                        
Sbjct: 712 AIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKG 771

Query: 539 ----------NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
                     ++Y  +I  L   +  G+A +  E+M  KG     + +       S  G+
Sbjct: 772 LISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGK 831

Query: 589 S 589
           S
Sbjct: 832 S 832



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 154/387 (39%), Gaps = 76/387 (19%)

Query: 244 NSRTYNSMMSILGRARQFETMVS---MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
           N  +Y  +  I G   + E MV+   ++E +G      + T    ++    + +  +A+ 
Sbjct: 450 NQLSYTPL--IHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALM 507

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWC 359
           + E M + +     +  N L+  L + ++   A+ LL + L+ +  P+   YT L+ G+ 
Sbjct: 508 VREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFI 567

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           R   L +A +++  M +KG   D+VA+N M++G  K G  ++A+     M+  G  P+  
Sbjct: 568 RSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEF 627

Query: 420 SYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +YT +I  +                    CK N   Y  LI G+ N    D    L   M
Sbjct: 628 TYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASM 687

Query: 460 EERGCPPDGLTYNALI-KLMKIQKM----------------PDEA--------------- 487
           +  G  P+ + Y  LI  L K  K                 P++A               
Sbjct: 688 QSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYG 747

Query: 488 ------------------VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
                             + ++K ++  G  P I  YN I+ S  +        ++ ++M
Sbjct: 748 MINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKM 807

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGE 556
             +GC PD  ++  L+ G  S  +SG+
Sbjct: 808 SNKGCLPDPVTFLSLLYGFSSVGKSGK 834



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 17/237 (7%)

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           V++ G C    + E  R+      +G  P  V +N++++G  + G     + L   M+ K
Sbjct: 281 VMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMK 340

Query: 413 GPSPNVRSYTIMI-WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           G  P V +Y  +I W                 G +  +  +  LL EM+ERG  P+   Y
Sbjct: 341 GIMPTVVTYGAIIHW----------------LGRKSDLTKIESLLWEMKERGLSPNVQIY 384

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N +I  +   +   +A+ +  +MV S F P + T+N ++ ++ + G+ E   K+  E IR
Sbjct: 385 NTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIR 444

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           R   P+  SYT LI G   +     A   L EM+ +G    V+        L  +G+
Sbjct: 445 RELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQ 501


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 166/346 (47%), Gaps = 22/346 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + R +++ET+VS+ +EM  +G+  ++ T  I +N F          ++F    
Sbjct: 43  FNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTL 102

Query: 307 KYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  FK  V     L++ + R  K    A LL +       P++ T   L+ G+C    + 
Sbjct: 103 KRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKID 162

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +  ++++ M+ KG KPDV +++I + G  K+ K  +A++LF+ M  +G  PN  +Y  +I
Sbjct: 163 KVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLI 222

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C+    ++A V                Y+ L+ GF  +  +D +  L +EM+ R   
Sbjct: 223 KALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVK 282

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + Y  +I  M   +   +A  +   ++  G KP +HTY  ++    + G+     ++
Sbjct: 283 PDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRL 342

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           + +M   GC P   SY VL+ G +  + +    + + EM ++G  A
Sbjct: 343 FRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYA 388



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 23/253 (9%)

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           NL +A   +N M+D+  +P ++  N +L  ++++ K    + LF+ M+ +G   NV + +
Sbjct: 20  NLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLS 79

Query: 423 IMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  FC                    K +  ++T LI G     + ++   LLKEM   
Sbjct: 80  ILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLV 139

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           GC PD +T N+L++    Q   D+  +I+  MV  G KP +++Y++ +  Y +    +  
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            +++DEM  RG  P+  +Y  LI  L    R  +A     +M   G+   +L Y+     
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDG 259

Query: 583 LSRAGRSYVLDEL 595
             + G    LDE+
Sbjct: 260 FCKQGN---LDEM 269



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 29/232 (12%)

Query: 194 LDRNMEAVLDECGINLSHNLVVD-------VLERFRHARRP-----AFRFFCWAGDKPGF 241
           +D  ME + DE    +SH  VV        +++    A RP      FR  C  G  P  
Sbjct: 196 IDEAME-LFDE----MSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSP-- 248

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
             +   Y++++    +    + M+ + +EM  + +   +  + I +N    +++ K A  
Sbjct: 249 --DILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKE 306

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +   +     K  V T   L++ L R     EA  LF K++     P   +Y VLL G  
Sbjct: 307 VLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCL 366

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK----LFE 407
           +  +     ++ +EM D+GF  D V    + + L   G  S AIK    LFE
Sbjct: 367 QHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFL--PGNDSPAIKQLLGLFE 416



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           FGN   +D        M +R   P  + +N L+  +   K  +  V ++KEM   G K  
Sbjct: 18  FGN---LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYN 74

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + T ++++  +    + + G  V+ + ++RG  PD   +T LI G+    ++  A   L+
Sbjct: 75  VCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLK 134

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
           EM   G    V+  N         G+
Sbjct: 135 EMGLVGCVPDVVTCNSLMRGYCSQGK 160


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 52/415 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   N+ TYN++++IL   R+ +    +L  MG  G   ++ T+   +  +    + K
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA+ +   M +    A + T N +++    S     A  + D ++     P+  +YT L+
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C++  +  A  ++NEM+D G  P+ V +  +++G  K  K   A  L E MK  G  
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           PNV++Y ++I    KQN                       YT +I G        +  ++
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M E+GC P+ LTY++LI+ +  +   +EA  ++ E+ R G  P   TY  ++++Y  
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL--------------------------- 548
           +G  E        MI+ GC P   +Y VLI GL                           
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             QD        L E L+ G+   V   N   ++LS AGR +  +EL   M   G
Sbjct: 743 TDQDAVSVMSAKLAE-LDPGLSVQV--QNALVSNLSTAGRWFEANELLGSMISQG 794



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 18/363 (4%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+R F    +K G   N  TY +++S L  +   +  + +   M   G+  +  T+   +
Sbjct: 339 AWRLFVDMKNK-GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           N     +  K A  +  LM +      + T N +++       PK+A L+ + +  R  +
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 457

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            NL TY  ++ G+C   N   A R+ + M D G KPD  ++  ++ G  KI K   A  L
Sbjct: 458 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G  PN  +YT +I  +CK                 ++D    LL+ M+  GC 
Sbjct: 518 FNEMVDDGLCPNEVTYTALIDGYCKD---------------EKLDTATSLLEHMKRSGCR 562

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  TYN LI  +  Q     A  + K M+  G  P + TY  ++    + G+  +  ++
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +++MI +GC P+  +Y+ LI  L  + +  EA     E+   G+    + Y K       
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 586 AGR 588
           +G+
Sbjct: 683 SGK 685



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 129/341 (37%), Gaps = 55/341 (16%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +L +  +  L    Q+     K    PN  TY+ L+ G C    + EA  +  EMI  G 
Sbjct: 257 ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 316

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
            P        +  L  +G   DA +LF  MK KG  PNV +YT +I   C          
Sbjct: 317 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 376

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI      RR+   + +L  M   GC P+ +TYN +IK   
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD------------ 527
           I   P +A+ +   M++ G    + TYN I+K Y  +GN     ++ D            
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 528 -----------------------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                                  EM+  G CP++ +YT LI G    ++   A   LE M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
              G +  V  YN     L++       +EL + M   G F
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/442 (20%), Positives = 170/442 (38%), Gaps = 81/442 (18%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +Y  ++    +  + E+   +  EM + GL   E T+   ++ +   ++   A ++ E M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   +  V T N L+  L + +      +L    ++    PN+ TYT ++ G C+  + 
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  ++N+MI++G  P+++ ++ ++  L + GK  +A  LF  ++  G  P+  +Y  M
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK----- 479
           I  +          +++G     +++  ++ L  M + GC P   TY  LIK +K     
Sbjct: 677 IEAY----------IMSG-----KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 721

Query: 480 ----IQKMPD-------------------------------------------------- 485
               +  +PD                                                  
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +   M+  G  P    YN ++ S  +  N ++   V+  M  +GC    N Y  LI
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM---RFS 602
             L    R  EA    E ML +      +        L R G   +  E    M   R+ 
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 901

Query: 603 GKFEVSNVLARWAETTKNRVYR 624
             F +  +LAR  E +K R ++
Sbjct: 902 PSFHIYTILAR--EASKKRSWK 921



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 16/284 (5%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           + ++  +++++   + G+   + LL +L R  +       + + L     PNL  Y  ++
Sbjct: 163 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 222

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  N+ +A  +  ++ +    PD   +  M+ G  +      A+++F  M  +G  
Sbjct: 223 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG-- 280

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C+ N   Y+ LI G  +  R++  +DL++EM   G  P   T    I
Sbjct: 281 -------------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +      ++A R++ +M   G +P ++TY  ++     +G  ++   ++  M R G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           P+  +Y  LI  L+   R   A+  L  M   G    ++ YN+ 
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 27/266 (10%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L  Y+ LL    R+         ++ M+ +G +P+++ +N ++  L K G  +DA  + +
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            +     SP+  +YT MI   C+++                +D    +  +M + GC P+
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKH---------------DLDSALQVFNQMAKEGCEPN 284

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TY+ LI  +      +EA  + +EM+  G  PT HT    + +    G YE   +++ 
Sbjct: 285 TVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFV 344

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +M  +GC P+  +YT LI GL        A      M   G+    + YN          
Sbjct: 345 DMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA--------- 395

Query: 588 RSYVLDELAQKMRFSGKFEVSNVLAR 613
              +++ L +  R    F V N++ R
Sbjct: 396 ---LINILVENRRIKYAFVVLNLMGR 418



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 67/171 (39%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI    ++  M      L  + + G       Y+AL+  +    M    +  Y  M+  G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P +  YN ++ +  + GN      +  ++      PD  +YT +I G   +     A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
           +   +M ++G +   + Y+     L  +GR     +L ++M   G    ++
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 178/370 (48%), Gaps = 21/370 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + GF  N  TY  +++++ ++ Q    + +L +M E+ + L    + I ++         
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
            A  +F  M    FKA + T N L+    N GR      A+LL D +K + +PN+ T++V
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR--WDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+  + +   L EA ++  EM+ +G  P+ + +N +++G  K  +  +AI++ ++M +KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P++ ++ I+I  +CK N               R+D   +L +EM  RG   + +TYN 
Sbjct: 399 CDPDIMTFNILINGYCKAN---------------RIDDGLELFREMSLRGVIANTVTYNT 443

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L++        + A ++++EMV    +P I +Y +++      G  E   +++ ++ +  
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
              D   Y ++I G+ +  +  +A+     +  KG+K     YN   ++L R       D
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563

Query: 594 ELAQKMRFSG 603
            L +KM   G
Sbjct: 564 ILFRKMTEEG 573



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 173/374 (46%), Gaps = 22/374 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N + S + + +Q+E ++++ ++M  KG+  S+ T  I +N F   ++   A +    + 
Sbjct: 91  FNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIM 150

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++      N LL  L       EA  L D++ +    P L T   L+ G C    + 
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVS 210

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  + + M++ GF+P+ V +  +L  + K G+ + A++L   M+ +    +   Y+I+I
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270

Query: 426 WKFCKQNA--------------------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK  +                      Y  LI GF N  R D    LL++M +R   
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +T++ LI     +    EA ++ KEM++ G  P   TYN ++  + +    E   ++
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            D MI +GC PD  ++ +LI G    +R  +  +   EM  +G+ A  + YN       +
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 586 AGRSYVLDELAQKM 599
           +G+  V  +L Q+M
Sbjct: 451 SGKLEVAKKLFQEM 464



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 29/349 (8%)

Query: 238 KPGFAHNSRTYNSMMSILG---RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           K G+  ++  +N++++ L    R  +   +V  + EMG K   ++ T    +N      +
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP--TLITLNTLVNGLCLNGK 208

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
              AV + + M +  F+    T   +L  + +S     A  L  K++ R    +   Y++
Sbjct: 209 VSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G C+  +L  A  ++NEM  KGFK D++ +N ++ G    G+  D  KL   M  + 
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            SPNV +++++I  F K+                    N   Y  LI GF    R++   
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            ++  M  +GC PD +T+N LI         D+ + +++EM   G      TYN +++ +
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
            Q+G  E+ +K++ EM+ R   PD  SY +L+ GL     +GE  K LE
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD---NGELEKALE 494



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 161/348 (46%), Gaps = 26/348 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+++     A +++    +L +M ++ +  ++ TF + +++F    + ++A
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M +        T N L++   +    +EA  + D +  +   P++ T+ +L+ G
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + +   ++ EM  +G   + V +N +++G  + GK   A KLF+ M ++   P+
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + SY I++   C                      +  +Y  +I G  N  ++D  +DL  
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFC 532

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +  +G   D   YN +I  +  +    +A  ++++M   G  P   TYN++++++    
Sbjct: 533 SLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDD 592

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +     ++ +EM   G  P D S   ++  ++S   SGE  K   +ML
Sbjct: 593 DATTAAELIEEMKSSG-FPADVSTVKMVINMLS---SGELDKSFLDML 636



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 20/243 (8%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ +MI     P V+  N +   + K  +    + L + M++KG + ++ + +IMI
Sbjct: 71  DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             FC+                     +  ++  L+ G     R+    +L+  M E G  
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  +T N L+  + +     +AV +   MV +GF+P   TY  ++    ++G   +  ++
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             +M  R    D   Y+++I GL        A+    EM  KG KA ++ YN        
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310

Query: 586 AGR 588
           AGR
Sbjct: 311 AGR 313



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 62/141 (43%)

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           + D   DL ++M +    P  + +N L   +   K  +  + + K+M   G   +I+T +
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  + +            ++++ G  PD   +  L+ GL  + R  EA + ++ M+E 
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 568 GMKAPVLDYNKFAADLSRAGR 588
           G K  ++  N     L   G+
Sbjct: 188 GHKPTLITLNTLVNGLCLNGK 208


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 165/351 (47%), Gaps = 22/351 (6%)

Query: 260 QFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + +  V +  EM + + L S+  F   ++A A   +    +++ E M   +    + + N
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 319 CLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+    R S+LP    +L   +K  + P++ T + LL G+C  K + EA  + ++M   
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 163

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
            ++P+ V  N ++ GL    K S+A+ L + M A+G  P++ +Y  ++   CK+      
Sbjct: 164 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         +  +YT +I    N + ++   +L  EM+ +G  P+ +TYN+LI+ 
Sbjct: 224 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       +A R+  +M+     P + T++ ++ ++ + G      K++DEMI+R   PD
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 343

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y+ LI G    DR  EA    E M+ K     V+ YN       +A R
Sbjct: 344 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 179/405 (44%), Gaps = 57/405 (14%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            +++  +YN +++   R  Q    +++L +M + G    + T    +N +   K   +AV
Sbjct: 95  ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 154

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL------------------- 340
           A+ + M   +++    T N L+  L       EA  L D++                   
Sbjct: 155 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 214

Query: 341 -----------------KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
                            K +   ++  YT ++   C  KN+ +A  ++ EM +KG +P+V
Sbjct: 215 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 274

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV-------- 435
           V +N ++  L   G+ SDA +L   M  +  +PNV +++ +I  F K+   V        
Sbjct: 275 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 334

Query: 436 ------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                       Y+ LI GF    R+D    + + M  + C P+ +TYN LIK     K 
Sbjct: 335 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +E + +++EM + G      TYN +++  FQ G+ +M +K++ +M+  G  PD  +Y++
Sbjct: 395 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 454

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L+ GL    +  +A    E + +  M+  +  YN     + +AG+
Sbjct: 455 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 499



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 179/383 (46%), Gaps = 30/383 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFEL 304
           TY ++++ L +    +  +S+L++M EKG +  +   +   ++A    K    A+ +F  
Sbjct: 206 TYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 264

Query: 305 MNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           M+    +  V T N L+    N GR      ++LL D ++ +  PN+ T++ L+  + + 
Sbjct: 265 MDNKGIRPNVVTYNSLIRCLCNYGR--WSDASRLLSDMIERKINPNVVTFSALIDAFVKE 322

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA ++++EMI +   PD+  ++ ++ G     +  +A  +FE+M +K   PNV +Y
Sbjct: 323 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 382

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I  FCK                     N   Y  LI G       D+   + K+M  
Sbjct: 383 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 442

Query: 462 RGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            G PPD +TY+ L+  L K  K+ ++A+ +++ + +S  +P I+TYN++++   + G  E
Sbjct: 443 DGVPPDIITYSILLDGLCKYGKL-EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVE 501

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
            G  ++  +  +G  P+   YT +I G   +    EA     EM E G       YN   
Sbjct: 502 DGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 561

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               R G      EL ++MR  G
Sbjct: 562 RARLRDGDKAASAELIKEMRSCG 584



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 181/385 (47%), Gaps = 22/385 (5%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAV 299
           +  N+ T+N+++  L    +    V++++ M  +G    + T+   +N      +   A+
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           ++ + M K K +A V     +++ L   K   +A  LF ++ ++   PN+ TY  L+   
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C      +A R+ ++MI++   P+VV  + +++  +K GK  +A KL++ M  +   P++
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 419 RSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y+                    +MI K C  N   Y  LI GF   +R++   +L +E
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 404

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M +RG   + +TYN LI+ +      D A +I+K+MV  G  P I TY++++    + G 
Sbjct: 405 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 464

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E    V++ + +    PD  +Y ++I G+    +  + +     +  KG+K  V+ Y  
Sbjct: 465 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 524

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
             +   R G     D L ++M+  G
Sbjct: 525 MISGFCRKGLKEEADALFREMKEDG 549



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 165/378 (43%), Gaps = 22/378 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + +  +F+ ++S+ E M    +   + ++ I +N F    +   A+A+   M 
Sbjct: 67  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 126

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++  + T++ LL      K   EA  L D++    + PN  T+  L+ G        
Sbjct: 127 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 186

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  + + M+ +G +PD+  +  ++ GL K G    A+ L + M+      +V  YT +I
Sbjct: 187 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 246

Query: 426 WKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                    + N   Y  LI    N  R      LL +M ER   
Sbjct: 247 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 306

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +T++ALI     +    EA ++Y EM++    P I TY+ ++  +      +  + +
Sbjct: 307 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ MI + C P+  +Y  LI G     R  E  +   EM ++G+    + YN     L +
Sbjct: 367 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 426

Query: 586 AGRSYVLDELAQKMRFSG 603
           AG   +  ++ +KM   G
Sbjct: 427 AGDCDMAQKIFKKMVSDG 444



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 175/383 (45%), Gaps = 25/383 (6%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           ID   SL + ME    E  + + +  ++D L  +++    A   F    D  G   N  T
Sbjct: 220 IDLALSLLKKMEKGKIEADVVI-YTTIIDALCNYKNVN-DALNLFTEM-DNKGIRPNVVT 276

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YNS++  L    ++     +L +M E+ +  ++ TF   ++AF    +  +A  +++ M 
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 336

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K      + T + L+          EA+ +F+ +  +   PN+ TY  L+ G+C+ K + 
Sbjct: 337 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 396

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   ++ EM  +G   + V +N +++GL + G    A K+F+ M + G  P++ +Y+I++
Sbjct: 397 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 456

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 457 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 516

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ + Y  +I     + + +EA  +++EM   G  P   TYN ++++  + G+     ++
Sbjct: 517 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAEL 576

Query: 526 WDEMIRRGCCPDDNSYTVLIGGL 548
             EM   G   D ++ +++I  L
Sbjct: 577 IKEMRSCGFVGDASTISMVINML 599


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 281 TFKIAMNAFAAAKERKK-AVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           TF I     A ++ R   AV +F  L   ++    +   N LL+ L +S+   +A  L  
Sbjct: 130 TFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVR 189

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
            L+ RFTP++ TY  L  GWCRVK+   A  V   M++ G  P    +NI+L+G  + G+
Sbjct: 190 ALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQ 249

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A   F  MK +G             + CK +   YT ++ G G   +++    +  E
Sbjct: 250 LRHAWDFFLQMKKRGSKD----------ESCKPDVVSYTTMVHGLGVAGQLEKARKVFDE 299

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M + GC P   TYNALI+++  +   ++AV ++  M   G+ P + TY ++++     G 
Sbjct: 300 MAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGK 359

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            + G K+ + M   GC P   +Y VLI  L  +    +     E+M
Sbjct: 360 IDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKM 405



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 149/333 (44%), Gaps = 32/333 (9%)

Query: 225 RRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF 282
           RRP  A R F         A +   +NS++  L ++R      S++  + ++    + T+
Sbjct: 143 RRPDLAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTY 202

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342
               + +   K+  +A+ +  LM +        T N +L+   R+   + A   F ++K 
Sbjct: 203 NTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKK 262

Query: 343 RFT------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           R +      P++ +YT ++ G      L +A +V++EM  +G  P V  +N +++ + K 
Sbjct: 263 RGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKK 322

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVY 436
           G   DA+ +F+ M+ KG  PNV +YT++I   C                          Y
Sbjct: 323 GNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTY 382

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQKMPDE---AVRIYK 492
             LI        M+   DL ++M +   C P+  TYN +I  M ++K  ++   A R+ +
Sbjct: 383 NVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVE 442

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           EMV  G+ P    +N ++     TGN E+ RK+
Sbjct: 443 EMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKL 475



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 6/177 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G A +  TYN+++ ++ +    E  V++ + M  KG + ++ T+ + +     A +  
Sbjct: 302 KEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKID 361

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK--HRFTPNLTTYTVL 354
           + + + E M     +  V T N L+  L      ++   LF+K+       PN  TY ++
Sbjct: 362 RGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNII 421

Query: 355 LGGWC---RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
           +       R ++++ A R+  EM+D+G+ P     N +L GL+  G +  + KL  +
Sbjct: 422 ISAMFMRKRAEDMVLAARMVEEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKLLRM 478


>gi|212275500|ref|NP_001130935.1| uncharacterized protein LOC100192040 [Zea mays]
 gi|194690482|gb|ACF79325.1| unknown [Zea mays]
          Length = 380

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 32/333 (9%)

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           D +N LL+   +  + KEA+ +F ++K +   N  TY+ L  GWCR ++  +A +V  EM
Sbjct: 47  DALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEM 106

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---PSPNVRSYTIMIWKF--- 428
           I     P+   +   +      G  S+A +LFE M+ +G    SP  ++Y+IMI      
Sbjct: 107 IQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAKA 166

Query: 429 -----------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
                            C  +   Y  LI G     ++D  Y +L EM   G PPD +TY
Sbjct: 167 DRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTY 226

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N  + +    +  D+A+ + + M+ +  +P++HTYNM+M  +F+ G       +  EM +
Sbjct: 227 NCFLNVFCSHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMDK 286

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLSRAGR 588
           R C    ++Y ++I GL     +  A   L+E++ + MK   L Y KF A    LS  G 
Sbjct: 287 RRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMK---LSYKKFDAIMLRLSDVGN 343

Query: 589 SYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
              +  L++ MR   KF    +  R+A T K +
Sbjct: 344 LGAIHRLSEHMR---KFYNVAMARRFAITQKKK 373



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 19/263 (7%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           K L + ET+      +  A++ KKA+ + E M + K      T    + +   + L  EA
Sbjct: 75  KLLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSAGLVSEA 134

Query: 334 QLLFDKLKHR----FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           + LF+ ++       +P   TY++++    +   + E   + ++M   G  PDV  +  +
Sbjct: 135 RELFEFMRTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDL 194

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           +EG+  +GK   A ++ + M   G  P++                 Y C +  F + R+ 
Sbjct: 195 IEGMCLVGKLDAAYRVLDEMGRAGFPPDI---------------VTYNCFLNVFCSHRKA 239

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D   +L + M E  C P   TYN ++ +         A+ I  EM +   +  I TY ++
Sbjct: 240 DDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMDKRRCQRAIDTYEIM 299

Query: 510 MKSYFQTGNYEMGRKVWDEMIRR 532
           +   F  G  E    + DE+I R
Sbjct: 300 IYGLFDCGETEYATALLDEVINR 322



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 118/280 (42%), Gaps = 20/280 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TY+++     RAR  +  + +LEEM + K      T+  A+ +F +A    +A  +F
Sbjct: 79  NAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSAGLVSEARELF 138

Query: 303 ELMNKYKFKAG---VDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGW 358
           E M             T + ++  L ++   +E  +LL D       P++TTY  L+ G 
Sbjct: 139 EFMRTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGM 198

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C V  L  A RV +EM   GF PD+V +N  L       K  DA++L E M      P+V
Sbjct: 199 CLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVFCSHRKADDALELCERMIEAHCEPSV 258

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y          N  +      G  +R       D+  EM++R C     TY  +I  +
Sbjct: 259 HTY----------NMMMMMFFEMGEAHR-----ALDICLEMDKRRCQRAIDTYEIMIYGL 303

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
                 + A  +  E++    K +   ++ IM      GN
Sbjct: 304 FDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLSDVGN 343


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 52/415 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   N+ TYN++++IL   R+ +    +L  MG  G   ++ T+   +  +    + K
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA+ +   M +    A + T N +++    S     A  + D ++     P+  +YT L+
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C++  +  A  ++NEM+D G  P+ V +  +++G  K  K   A  L E MK  G  
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           PNV++Y ++I    KQN                       YT +I G        +  ++
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M E+GC P+ LTY++LI+ +  +   +EA  ++ E+ R G  P   TY  ++++Y  
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL--------------------------- 548
           +G  E        MI+ GC P   +Y VLI GL                           
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             QD        L E L+ G+   V   N   ++LS AGR +  +EL   M   G
Sbjct: 743 TDQDAVSVMSAKLAE-LDPGLSVQV--QNALVSNLSTAGRWFEANELLGSMISQG 794



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 157/354 (44%), Gaps = 18/354 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+R F    +K G   N  TY +++S L  +   +  + +   M   G+  +  T+   +
Sbjct: 339 AWRLFVDMKNK-GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           N     +  K A  +  LM +      + T N +++       PK+A L+ + +  R  +
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 457

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            NL TY  ++ G+C   N   A R+ + M D G KPD  ++  ++ G  KI K   A  L
Sbjct: 458 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G  PN  +YT +I  +CK                 ++D    LL+ M+  GC 
Sbjct: 518 FNEMVDDGLCPNEVTYTALIDGYCKD---------------EKLDTATSLLEHMKRSGCR 562

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  TYN LI  +  Q     A  + K M+  G  P + TY  ++    + G+  +  ++
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +++MI +GC P+  +Y+ LI  L  + +  EA     E+   G+    + Y K 
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 129/341 (37%), Gaps = 55/341 (16%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +L +  +  L    Q+     K    PN  TY+ L+ G C    + EA  +  EMI  G 
Sbjct: 257 ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 316

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
            P        +  L  +G   DA +LF  MK KG  PNV +YT +I   C          
Sbjct: 317 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIG 376

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI      RR+   + +L  M   GC P+ +TYN +IK   
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD------------ 527
           I   P +A+ +   M++ G    + TYN I+K Y  +GN     ++ D            
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 528 -----------------------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                                  EM+  G CP++ +YT LI G    ++   A   LE M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
              G +  V  YN     L++       +EL + M   G F
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 168/439 (38%), Gaps = 81/439 (18%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +Y  ++    +  + E+   +  EM + GL   E T+   ++ +   ++   A ++ E M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   +  V T N L+  L + +      +L    ++    PN+ TYT ++ G C+  + 
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  ++N+MI++G  P+++ ++ ++  L + GK  +A  LF  ++  G  P+  +Y  M
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK----- 479
           I  +          +++G     +++  ++ L  M + GC P   TY  LIK +K     
Sbjct: 677 IEAY----------IMSG-----KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 721

Query: 480 ----IQKMPD-------------------------------------------------- 485
               +  +PD                                                  
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +   M+  G  P    YN ++ S  +  N ++   V+  M  +GC    N Y  LI
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM---RFS 602
             L    R  EA    E ML +      +        L R G   +  E    M   R+ 
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 901

Query: 603 GKFEVSNVLARWAETTKNR 621
             F +  +LAR  E +K R
Sbjct: 902 PSFHIYTILAR--EASKKR 918



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 16/284 (5%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           + ++  +++++   + G+   + LL +L R  +       + + L     PNL  Y  ++
Sbjct: 163 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 222

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  N+ +A  +  ++ +    PD   +  M+ G  +      A+++F  M  +G  
Sbjct: 223 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG-- 280

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C+ N   Y+ LI G  +  R++  +DL++EM   G  P   T    I
Sbjct: 281 -------------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +      ++A R++ +M   G +P ++TY  ++     +G  ++   ++  M R G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF 387

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           P+  +Y  LI  L+   R   A+  L  M   G    ++ YN+ 
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 27/266 (10%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L  Y+ LL    R+         ++ M+ +G +P+++ +N ++  L K G  +DA  + +
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            +     SP+  +YT MI   C+++                +D    +  +M + GC P+
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKH---------------DLDSALQVFNQMAKEGCEPN 284

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TY+ LI  +      +EA  + +EM+  G  PT HT    + +    G YE   +++ 
Sbjct: 285 TVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFV 344

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +M  +GC P+  +YT LI GL        A      M   G+    + YN          
Sbjct: 345 DMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA--------- 395

Query: 588 RSYVLDELAQKMRFSGKFEVSNVLAR 613
              +++ L +  R    F V N++ R
Sbjct: 396 ---LINILVENRRIKYAFVVLNLMGR 418



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 67/171 (39%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI    ++  M      L  + + G       Y+AL+  +    M    +  Y  M+  G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P +  YN ++ +  + GN      +  ++      PD  +YT +I G   +     A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
           +   +M ++G +   + Y+     L  +GR     +L ++M   G    ++
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 162/350 (46%), Gaps = 23/350 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           ++N ++  L +   +  + S+  EM   GL   + T  I  N         +A+A    +
Sbjct: 93  SFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGI 152

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            +  +   V T   L++ L       EA  LF ++ K   TPN  TY  L+ G C+  N+
Sbjct: 153 LRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNV 212

Query: 365 MEAGRVWNEMIDKG------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
             A ++  EM++         KP V+ ++I+++GL K+G+  +A +LFE MKA+G  P+V
Sbjct: 213 NIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDV 272

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            SY+ +I  FC                  + D    L  EM ++G  PD +T++ LI  +
Sbjct: 273 ISYSTLIHGFCCAG---------------KWDQSKHLFDEMVDQGVQPDMVTFSVLIDTL 317

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             +    EA ++ + M++ G  P + TYN ++  +   G+    R+++  M  +G  PD+
Sbjct: 318 CKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDE 377

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            SYT LI G     +  EA     EML+ G    V  Y      L + G+
Sbjct: 378 ISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 24/298 (8%)

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGR 369
           K GV T + +++ L +     EA+ LF+++K +   P++ +Y+ L+ G+C      ++  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +++EM+D+G +PD+V  +++++ L K GK ++A KL EVM  +G  PN+ +Y  +I  FC
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPD 485
                     + G  N  R     +L   M  +G  PD ++Y  LI    K  K++    
Sbjct: 354 ----------MVGDLNSAR-----ELFLSMPSKGLEPDEISYTTLINGYCKTWKVK---- 394

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ +Y EM++ G  P + TY  ++K  FQ G     +K++  M   G   +   Y + +
Sbjct: 395 EAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFL 454

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL   D   EA +   E+     K  + +Y+     L +AG+     EL +K+   G
Sbjct: 455 DGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEG 512



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 169/351 (48%), Gaps = 28/351 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  +Y++++     A +++    + +EM ++G+   M TF + ++      +  +A
Sbjct: 267 GMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEA 326

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + E+M +      + T N L++          A+ LF  +  +   P+  +YT L+ G
Sbjct: 327 KKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLING 386

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + EA  ++NEM+  G  P+V  +  +L+GL + GK  DA KLF VMK  G S N
Sbjct: 387 YCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSAN 446

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
            + Y I +   CK                     N   Y+CLI G     +++  ++L +
Sbjct: 447 SQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFE 506

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           ++ + G  PD +TYN +I    K+ ++ D A  ++++M  +G  P I  YN ++  + + 
Sbjct: 507 KLSQEGLQPDVVTYNIMIHGFCKVGQV-DNANILFEKMEENGCTPDIIAYNTLLCGFCEG 565

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
              E   K+  +M+++   P+  S T+++  ++ +D   E YK   ++L K
Sbjct: 566 NKLEEVIKLLHKMVQKDVSPNAASCTIVV-DMLCKD---EKYKKFVDLLPK 612



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 126/269 (46%), Gaps = 28/269 (10%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P ++++  LLGG  ++ +  +   ++NEM   G  PD+   +I+   L  + + S+A+  
Sbjct: 89  PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
              +  +G  PNV +YT +I   C +                    NA  Y  LI G   
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208

Query: 446 RRRMDIVYDLLKEMEERG------CPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSG 498
              ++I   L KEM          C P  +TY+ +I  L K+ +  DEA  +++EM   G
Sbjct: 209 TGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGR-EDEAKELFEEMKAQG 267

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P + +Y+ ++  +   G ++  + ++DEM+ +G  PD  +++VLI  L  + +  EA 
Sbjct: 268 MIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAK 327

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           K LE M+++G+   ++ YN         G
Sbjct: 328 KLLEVMIQRGIVPNLITYNSLIDGFCMVG 356


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 44/390 (11%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + GF  +  TYNS++   G+    +  + + E+M +      + T+   +N F   +   
Sbjct: 84  EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMP 143

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLL 355
           KA      M     K  V T +  ++   +  + +EA   F D  +   TPN  TYT L+
Sbjct: 144 KAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 203

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  NL EA ++  E++  G K +VV +  +L+GL + G+  +A ++F  M   G +
Sbjct: 204 DANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVA 263

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  +YT                L+ GF   + M+   D+LKEM+E+   PD L Y  ++
Sbjct: 264 PNQETYT---------------ALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN----------------- 518
             +  +   +EA  +  E+  SG       Y  +M +YF++G                  
Sbjct: 309 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDG 368

Query: 519 ------YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
                 +E+ +K++DEM+ +G  PD  +YT LI G +      EA    + M+E GM+  
Sbjct: 369 LCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELD 428

Query: 573 VLDYNKFAADLSRAGRSY----VLDELAQK 598
           +  Y      LS +G+      +LDE+  K
Sbjct: 429 LHAYTALIWGLSHSGQVQKARNLLDEMIGK 458



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 159/346 (45%), Gaps = 17/346 (4%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           R+ N+++  L +  + +      ++MG  G+  S+ T+ I ++      + + A ++F  
Sbjct: 22  RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQ 81

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M +  F   + T N L++  G+  L  E   +F+++K     P++ TY  L+  +C+ + 
Sbjct: 82  MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 141

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A    +EM   G KP+VV ++  ++   K G   +AIK F  M+    +PN  +YT 
Sbjct: 142 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 201

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           +I   CK             GN         L++E+ + G   + +TY AL+  +  +  
Sbjct: 202 LIDANCKA------------GNLAE---ALKLVEEILQAGIKLNVVTYTALLDGLCEEGR 246

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA  +++ M+ +G  P   TY  ++  + +    E  + +  EM  +   PD   Y  
Sbjct: 247 MKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 306

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           ++ GL ++ R  EA   + E+ E G+    + Y        ++G++
Sbjct: 307 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 352



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 18/275 (6%)

Query: 331 KEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           +EA   F K+ K R  P   +   LL    +V     + + + +M   G K  V  +NIM
Sbjct: 3   EEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIM 62

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           ++ L K G    A  LF  MK  G +P++                 Y  LI G G    +
Sbjct: 63  IDYLCKEGDLEMARSLFTQMKEAGFTPDI---------------VTYNSLIDGHGKLGLL 107

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           D    + ++M++  C PD +TYNALI    K ++MP +A     EM  +G KP + TY+ 
Sbjct: 108 DECICIFEQMKDADCDPDVITYNALINCFCKFERMP-KAFEFLHEMKANGLKPNVVTYST 166

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            + ++ + G  +   K + +M R    P++ +YT LI          EA K +EE+L+ G
Sbjct: 167 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 226

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +K  V+ Y      L   GR    +E+ + M  +G
Sbjct: 227 IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 261


>gi|7340724|emb|CAB82967.1| putative protein [Arabidopsis thaliana]
          Length = 342

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 76/92 (82%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +AAVYTCLITGFG ++++  VY+LLKEM+E+G PPDG TYNALIKLM  QK+ + A RIY
Sbjct: 10  DAAVYTCLITGFGTQKKLVTVYELLKEMQEKGHPPDGKTYNALIKLMANQKISEHATRIY 69

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            +++++  +P+IHT+NMIMKSYF   NYEMGR
Sbjct: 70  NKLIQNNIEPSIHTFNMIMKSYFMARNYEMGR 101


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 192/413 (46%), Gaps = 33/413 (7%)

Query: 201 VLDE-----CGINL-SHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           VLDE     C  N+ ++N++++ +   +R   AR+   R   +     GF  ++ +Y ++
Sbjct: 194 VLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSY-----GFQPDTVSYTTV 248

Query: 252 MSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           +  L  A+++E +  +  EM E   +  E TF + +  F      ++A+ + + M+++  
Sbjct: 249 LKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGC 308

Query: 311 KAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
            A     N ++ ++ +     +A + L +   +  +P+  +YT +L G CR     +A  
Sbjct: 309 TANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKE 368

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           + NEM+ K   P+ V  N  +  L + G    AI L E M   G S  + +Y  ++  FC
Sbjct: 369 LLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFC 428

Query: 430 KQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
            Q                 N   YT L+TG  +  R+D   +LL EM +  CP + +T+N
Sbjct: 429 VQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFN 488

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+     +   +EA+ + ++M+  G  P + T+N ++    +  N E   ++   ++ +
Sbjct: 489 VLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSK 548

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           G   D  +Y+ ++  L  +DR  EA +    + + GM+   + YNK  + L +
Sbjct: 549 GISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCK 601



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 165/359 (45%), Gaps = 20/359 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY  ++  + ++  F   + +L+EM  KG   ++ T+ + +N          A  I   +
Sbjct: 174 TYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRL 233

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           + Y F+    +   +L+ L  +K  ++ ++LF + +++   PN  T+ +L+  +CR   +
Sbjct: 234 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMV 293

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  V + M + G   +    NI++  + K G+  DA +    M + G SP+  SYT +
Sbjct: 294 ERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTV 353

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   C+                 R +   +LL EM  + CPP+ +T+N  I ++  + + 
Sbjct: 354 LKGLCRAG---------------RWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLI 398

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           D+A+ + ++M   G    I TYN ++  +   G  +   ++++ +    C P+  +YT L
Sbjct: 399 DQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTL 455

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + GL   +R   A + L EM++      V+ +N   +   + G      EL Q+M   G
Sbjct: 456 LTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHG 514



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 16/292 (5%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A+++ + M + + +  V T   LLE + +S    +A  + D+++ +  TPN+ TY V++ 
Sbjct: 156 ALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIIN 215

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR   + +A ++ N +   GF+PD V++  +L+GL    +  D   LF  M      P
Sbjct: 216 GMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVP 275

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           N  ++ +++  FC+           G   R       ++L  M E GC  +    N +I 
Sbjct: 276 NEVTFDMLVRFFCRG----------GMVER-----AIEVLDRMSEHGCTANTTLCNIVIN 320

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  Q   D+A      M   G  P   +Y  ++K   + G +E  +++ +EM+R+ C P
Sbjct: 321 SICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPP 380

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++ ++   I  L  +    +A   +E+M E G    ++ YN         GR
Sbjct: 381 NEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGR 432



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 15/262 (5%)

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           R ++     LL D L+    P++ TYTVLL   C+     +A +V +EM  KG  P++V 
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N+++ G+ +  +  DA ++   + + G  P+  SYT ++   C                
Sbjct: 210 YNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAA-------------- 255

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            +R + V  L  EM E  C P+ +T++ L++      M + A+ +   M   G       
Sbjct: 256 -KRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTL 314

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
            N+++ S  + G  +   +  + M   GC PD  SYT ++ GL    R  +A + L EM+
Sbjct: 315 CNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMV 374

Query: 566 EKGMKAPVLDYNKFAADLSRAG 587
            K      + +N F   L + G
Sbjct: 375 RKNCPPNEVTFNTFICILCQKG 396



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 19/343 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           AF F    G   G + ++ +Y +++  L RA ++E    +L EM  K     E TF   +
Sbjct: 331 AFEFLNNMGSY-GCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFI 389

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
                     +A+ + E M +Y    G+ T N L+           A  LF+ L     P
Sbjct: 390 CILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE--P 447

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  TYT LL G C  + L  A  +  EM+      +VV  N+++    + G   +AI+L 
Sbjct: 448 NTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELV 507

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G +PN+ ++                 L+ G       +   +LL  +  +G   
Sbjct: 508 QQMMEHGCTPNLITFNT---------------LLDGITEDCNSEEALELLHGLVSKGISL 552

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TY++++ ++  +   +EAV+++  +   G +P    YN I+ +  +    +     +
Sbjct: 553 DTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFF 612

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             M+   C P++++Y +LI GL  +    EA   L E+  +G+
Sbjct: 613 AHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGV 655



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 18/226 (7%)

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L EA R+      +G  PDV     ++  L + G+ SDA ++    +  G   +V +Y 
Sbjct: 50  DLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYN 109

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
            ++  +C+            +G   R+D    L+  M     PPD  TY  LI+ +  + 
Sbjct: 110 TLVAGYCR------------YG---RLDAARRLIASMP---VPPDAYTYTPLIRGLCDRG 151

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
              +A+ +  +M+R   +P++ TY +++++  ++  +    KV DEM  +GC P+  +Y 
Sbjct: 152 RVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYN 211

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           V+I G+  +DR  +A + L  +   G +   + Y      L  A R
Sbjct: 212 VIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKR 257



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 124/328 (37%), Gaps = 52/328 (15%)

Query: 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           + R  L + A+L+         P++   T L+   CR     +A RV       G   DV
Sbjct: 46  IARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDV 105

Query: 384 VAHNI--------------------------------MLEGLLKIGKRSDAIKLFEVMKA 411
            A+N                                 ++ GL   G+  DA+ L + M  
Sbjct: 106 FAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLR 165

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
           +   P+V +YT+++   CK                     N   Y  +I G     R+D 
Sbjct: 166 RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDD 225

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              +L  +   G  PD ++Y  ++K +   K  ++   ++ EMV +   P   T++M+++
Sbjct: 226 ARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVR 285

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + + G  E   +V D M   GC  +     ++I  +  Q R  +A+++L  M   G   
Sbjct: 286 FFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSP 345

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + Y      L RAGR     EL  +M
Sbjct: 346 DTISYTTVLKGLCRAGRWEDAKELLNEM 373


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 168/364 (46%), Gaps = 20/364 (5%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  +Y SM+ +L   GR  + E + + +E   E+ +     +   +  + +A   +
Sbjct: 145 GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME--AERSVPCAYAYNTMIMGYGSAGRFE 202

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A  + E + +      V + N +L  LG+ +   EA  LF+ +K    PN +TY +++ 
Sbjct: 203 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIID 262

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
             C    + EA R+ +EM      P+++  NIM++ L K  K  +A K+FE    +G   
Sbjct: 263 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG--- 319

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  +   Y  LI G G + ++D  Y L ++M + G   + + Y +LI+
Sbjct: 320 ------------CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
              I    ++  +++KE++R G KP +   N  M   F+ G  E GR +++++   G  P
Sbjct: 368 NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 427

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  SY++LI GL    ++ E       M ++G       YN       ++G+ +   E+ 
Sbjct: 428 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 487

Query: 597 QKMR 600
           ++M+
Sbjct: 488 EEMK 491



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 184/403 (45%), Gaps = 24/403 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+ N++VD L + R     A++ F  A  + G   +  TY S++  LG+  Q +    + 
Sbjct: 290 LTVNIMVDRLCKARKLEE-AYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVDEAYRLF 347

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           E+M + G   +   +   +  F     ++    +F+ + +   K  +  +N  ++ + ++
Sbjct: 348 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKA 407

Query: 328 KLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              ++ +++F+ ++ + F P++ +Y++L+ G  +     E   +++ M  +GF  D  A+
Sbjct: 408 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 467

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------------- 430
           N +++G  K GK   A ++ E MK K   P V +Y  ++    K                
Sbjct: 468 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 527

Query: 431 ----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N  +Y+ LI GFG   R+D  Y +L+EM ++G  P+  T+N+L+  +   +  +E
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 587

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+  ++ M      P  +TY++++    +   Y      W +M ++G  P+  +YT +I 
Sbjct: 588 ALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMIS 647

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           GL       +AY   E     G       +N     +S A R+
Sbjct: 648 GLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRA 690



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 171/386 (44%), Gaps = 53/386 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKA 298
           G+   ++    + + L RAR+ +  V  +  M   K   +   + + + A A A+  ++A
Sbjct: 5   GYGLPNQACADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERA 64

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +   M +  ++ GV     L+  L R     +A  L D++K     P++  Y V +  
Sbjct: 65  LELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDC 124

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  N+  A + ++E+  +G KPD V++  M+  L K G+  +A +LF  M+A+   P 
Sbjct: 125 FGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPC 184

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  MI                G+G+  R +  Y LL+ + ERGC P  +++N+++  
Sbjct: 185 AYAYNTMI---------------MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC 229

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM-------- 529
           +  ++  DEA+ ++ E+++   +P   TYN+I+      G  E   ++ DEM        
Sbjct: 230 LGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 288

Query: 530 ---------------------------IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
                                       +RGC PD  +Y  LI GL  + +  EAY+  E
Sbjct: 289 LLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 348

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
           +ML+ G  A  + Y     +    GR
Sbjct: 349 KMLDAGHNANPVVYTSLIRNFFIHGR 374



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 175/401 (43%), Gaps = 57/401 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           NS TYN ++ +L    + E    +L+EM    L  ++ T  I ++    A++ ++A  IF
Sbjct: 253 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 312

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
           E  ++        T   L++ LG+     EA  LF+K L      N   YT L+  +   
Sbjct: 313 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 372

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               +  +V+ E+I +G KPD+   N  ++ + K G+      +FE +++ G  P+VRSY
Sbjct: 373 GRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 432

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           +I+I    K                     +A  Y  ++ GF    ++   Y++L+EM+E
Sbjct: 433 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 492

Query: 462 RGCPPDGLTYNALIK-LMKIQKMP----------------------------------DE 486
           +   P   TY A++  L KI ++                                   DE
Sbjct: 493 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDE 552

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  I +EM++ G  P ++T+N ++ +  +          +  M    C P+  +Y++LI 
Sbjct: 553 AYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILIN 612

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           GL    +  +A+ + ++M ++G+   V+ Y    + L++ G
Sbjct: 613 GLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 653



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+++++  L +   AR  +  F   A  + GFA ++R YN+++    ++ +      +LE
Sbjct: 431 SYSILIHGLTKAGQARETSNIFH--AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 488

Query: 270 EMGEK--------------GLLSMETFKIAMNAFAAAKER-------------------- 295
           EM EK              GL  ++    A   F  AK +                    
Sbjct: 489 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 548

Query: 296 --KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYT 352
              +A  I E M K      V T N LL+ L +++   EA + F  +K  +  PN  TY+
Sbjct: 549 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 608

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L+ G CRV+   +A   W +M  +G  P+VV +  M+ GL K+G  +DA  LFE  KA 
Sbjct: 609 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668

Query: 413 GPSPNVRSYTIMIWKFCKQNAAV 435
           G  P+  S+  +I      N A+
Sbjct: 669 GGIPDAASFNALIEGMSNANRAM 691



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 20/281 (7%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           +F P  + YTVL+G     +    A  +  +M + G++  V     ++  L + G+ +DA
Sbjct: 40  KFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADA 99

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           + L + +K     P++                +Y   I  FG    +D+      E++ +
Sbjct: 100 LALVDEVKGSCLEPDI---------------VLYNVCIDCFGKAGNVDMACKFFHELKAQ 144

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD ++Y ++I ++       EA  ++ +M      P  + YN ++  Y   G +E  
Sbjct: 145 GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDA 204

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            K+ + +  RGC P   S+  ++  L  + +  EA   L E+++K  +     YN     
Sbjct: 205 YKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS-LFEVMKKDAEPNSSTYNIIIDM 263

Query: 583 LSRAGR---SY-VLDELAQKMRFSGKFEVSNVLARWAETTK 619
           L   GR   +Y +LDE+     F     V+ ++ R  +  K
Sbjct: 264 LCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 304



 Score = 45.8 bits (107), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 4/155 (2%)

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           RR+D     +  M      P    Y  LI  +   + P+ A+ + ++M   G++  +H +
Sbjct: 24  RRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLF 83

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
             ++++  + G       + DE+  +G C  PD   Y V I           A K+  E+
Sbjct: 84  TTLVRALAREGQVADALALVDEV--KGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHEL 141

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             +G+K   + Y      L +AGR    +EL  +M
Sbjct: 142 KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM 176


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 171/383 (44%), Gaps = 34/383 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKK 297
           G   N  TY +++  + +     + +++L +M E   +  ++  +   ++       +  
Sbjct: 207 GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTD 266

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLG 356
           A  +F  M +      + T NC++     S    EAQ LL +  + + +P++ T++VL+ 
Sbjct: 267 AQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLIN 326

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
              +     EA  ++NEM+ +G  P+ + +N M++G  K  +   A ++F +M  KG SP
Sbjct: 327 ALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSP 386

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           +V +++I+I  +C                      N   YT LI GF     ++   DLL
Sbjct: 387 DVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLL 446

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-----------GFKPTIHT 505
           +EM   G  P+ +T N L+  +       +A+ ++K M +S             +P + T
Sbjct: 447 QEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQT 506

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN+++      G +    ++++EM  RG  PD  +Y  +I GL  Q R  EA +  + M 
Sbjct: 507 YNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMG 566

Query: 566 EKGMKAPVLDYNKFAADLSRAGR 588
            KG    V+ +        + GR
Sbjct: 567 SKGFSPDVVTFTTLINGYCKVGR 589



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 172/378 (45%), Gaps = 25/378 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  ++ ++ R  + + ++S+  +M  + +  ++ +F I +  F +  +   A++ F  + 
Sbjct: 79  FCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKIT 138

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366
           K  F   + T + LL  L       EA   F ++     PN+  +T L+ G CR   ++E
Sbjct: 139 KLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK---PNVIAFTTLMNGLCREGRVVE 195

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIMI 425
           A  + + M++ G +P+ + +  +++G+ K+G    A+ L   M+      PNV  Y+ +I
Sbjct: 196 AVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAII 255

Query: 426 ---WKFCKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              WK  +Q                 N   Y C+I GF +  R      LL+EM ER   
Sbjct: 256 DGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMS 315

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +T++ LI  +  +    EA  +Y EM+  G  P   TYN ++  + +    +   ++
Sbjct: 316 PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M  +GC PD  ++++LI G     R  +  K L EM  +G+ A  + Y        +
Sbjct: 376 FYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435

Query: 586 AGRSYVLDELAQKMRFSG 603
            G      +L Q+M  SG
Sbjct: 436 LGNLNAALDLLQEMISSG 453



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T++ +++ L +  +F     +  EM  +G++ +  T+   ++ F+       A  +F LM
Sbjct: 320 TFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLM 379

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   V T + L++   G  ++    +LL +  +     N  TYT L+ G+C++ NL
Sbjct: 380 ATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNL 439

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-------AKGP--- 414
             A  +  EMI  G  P+VV  N +L+GL   GK  DA+++F+VM+       A  P   
Sbjct: 440 NAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFND 499

Query: 415 -SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V++Y I               LI G  N  +     +L +EM  RG  PD +TYN+
Sbjct: 500 VEPDVQTYNI---------------LICGLINEGKFSEAEELYEEMPHRGLVPDTITYNS 544

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M   GF P + T+  ++  Y + G    G +V+ EM RRG
Sbjct: 545 VIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRG 604

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +Y  LI G         A    +EM+  G+
Sbjct: 605 IVANAITYRTLIHGFCQVGNINGALDIFQEMISSGV 640



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 56/300 (18%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G+  +K L +A  ++  M+     P V+    +L  ++++ +    I L   M+ + 
Sbjct: 47  LQSGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRR 106

Query: 414 PSPNVRSYTIMIWKF--------------------------------------------- 428
              N+ S+TI+I  F                                             
Sbjct: 107 IPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEAL 166

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                 CK N   +T L+ G     R+     LL  M E G  P+ +TY  ++  M   K
Sbjct: 167 HFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM--CK 224

Query: 483 MPD--EAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           M D   A+ + ++M   S  KP +  Y+ I+   ++ G     + ++ EM  +G  P+  
Sbjct: 225 MGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLF 284

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y  +I G  S  R  EA + L EM E+ M   V+ ++     L + G+ +  +EL  +M
Sbjct: 285 TYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEM 344



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           ++T+ I +       +  +A  ++E M          T N +++ L +     EA  +FD
Sbjct: 504 VQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFD 563

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
            +  + F+P++ T+T L+ G+C+V  + +   V+ EM  +G   + + +  ++ G  ++G
Sbjct: 564 SMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVG 623

Query: 398 KRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
             + A+ +F+ M + G  P+   +R+    +W
Sbjct: 624 NINGALDIFQEMISSGVYPDTITIRNMLTGLW 655


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 180/416 (43%), Gaps = 46/416 (11%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM---------------- 271
             RFF W+  +   ++   T   ++ +L  ++++  + S L+++                
Sbjct: 61  VLRFFQWSQKEFRISYGLETTGKVLHLLANSKKYSKVRSFLDKLVKNEKHTVSSVFHSLL 120

Query: 272 --GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
             G++   +     + + A+    E   A  +F  +  Y FK  +++ N LL  L +   
Sbjct: 121 LGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNE 180

Query: 330 PKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             E Q ++ + +K R  PNLTT+ + + G C+   L +A  V  ++   GF P++V +N 
Sbjct: 181 TGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNT 240

Query: 389 MLEGLLKIGK-----RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
           +++G  K G      R+DAI   + M A    PN  ++  +I  FCK             
Sbjct: 241 LIDGHCKKGSAGKMYRADAI--LKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEE 298

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   N   Y  LI G  N  ++D    L  +M   G  P+ +T+NALI     +KM
Sbjct: 299 MQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKM 358

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA +++ ++      P   T+N ++ ++ + G  E G  + + M+  G  P+ ++Y  
Sbjct: 359 IKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNC 418

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           LI GL        A K L EM    +KA V+ YN       + G     ++L  +M
Sbjct: 419 LIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEM 474



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 168/390 (43%), Gaps = 60/390 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  +  + N ++S L +  +   M  + +EM ++ +  ++ TF I +N    A +  KA
Sbjct: 160 GFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKA 219

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR----SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
             + E +  + F   + T N L++   +     K+ +   +L + L ++  PN  T+  L
Sbjct: 220 EDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTL 279

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+ +N++ A   + EM  +G KP++V +N ++ GL   GK  +AI L++ M   G 
Sbjct: 280 IDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGL 339

Query: 415 SPNVRSYT-----------------------------------IMIWKFCKQ-------- 431
            PN+ ++                                     MI  FCK         
Sbjct: 340 KPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFA 399

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N + Y CLI G    + +     LL EME      D +TYN LI    
Sbjct: 400 LHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWC 459

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
               P +A ++  EM+  G KP   TYN +M  Y   GN +   KV  +M + G   +  
Sbjct: 460 KDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVV 519

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +Y VLI G     +  +A + L EMLEKG+
Sbjct: 520 TYNVLIKGFCKTGKLEDANRLLNEMLEKGL 549



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 133/273 (48%), Gaps = 35/273 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  T+N++++   + +  +    + +++ E+ L+ +  TF   ++AF  A   ++ 
Sbjct: 338 GLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEG 397

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
            A+   M        V T NCL+  L R++  + A+ L ++++ +    ++ TY +L+GG
Sbjct: 398 FALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGG 457

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WC+     +A ++  EM++ G KP+ V +N +++G    G    A+K+   M+ +G   N
Sbjct: 458 WCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRAN 517

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y ++I  FCK          TG     +++    LL EM E+G  P+  TY      
Sbjct: 518 VVTYNVLIKGFCK----------TG-----KLEDANRLLNEMLEKGLNPNRTTY------ 556

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTI--HTYNM 508
                   + VR+  EM+  GF P I  H YN+
Sbjct: 557 --------DVVRL--EMLEKGFIPDIEGHLYNI 579


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 177/436 (40%), Gaps = 60/436 (13%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPG--FAHNSRTYNSMMSILGRARQFETMVSM 267
           SHN ++D   R R        F   +    G   A N +TYN ++  L      +  VS+
Sbjct: 121 SHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSL 180

Query: 268 LEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
              +  +G+     T+   M+  A   +   A+ + + M  Y  +A     N LL    R
Sbjct: 181 FSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFR 240

Query: 327 SKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           + + ++A  ++++L      +PNL TY V+L G C++    EAG VW+ M+    + D V
Sbjct: 241 TGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTV 300

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK-------------- 430
            + I++ GL + G    A +++  M   G   +V  Y  +I  FC+              
Sbjct: 301 TYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDST 360

Query: 431 -----QNAAVYTCLITGFGNRRRMDIVYDLLKEME-ERGCPPDGLTYNALIKLM------ 478
                +    Y  +  G  +   +    +LLK++E +  C PD +T+  LI  +      
Sbjct: 361 GFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYA 420

Query: 479 --KIQKMPD---------------------------EAVRIYKEMVRSGFKPTIHTYNMI 509
               + + D                           +A  +YK MV+ G KP  H YN +
Sbjct: 421 NRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNAL 480

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + +        K++ EM   GCCP   +Y  LI GL   ++  EA    +EMLE+G 
Sbjct: 481 INGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGF 540

Query: 570 KAPVLDYNKFAADLSR 585
           K  +  Y      L R
Sbjct: 541 KPDIRTYASLIRGLCR 556



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 170/400 (42%), Gaps = 62/400 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS--METFKIAMNAFAAAKERKK 297
           G   ++  YN+++S   R   FE  + + E++      S  + T+K+ ++        K+
Sbjct: 223 GVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKE 282

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A  ++  M     +A   T   L+  L RS  +   A++  D +K     +++ Y  L+ 
Sbjct: 283 AGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIK 342

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL----------- 405
           G+C V    EA + W+     G +  +  +NIM +GLL  G  S+A +L           
Sbjct: 343 GFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLKQLENDASCS 401

Query: 406 ----------------------FEVM---KAKGPSPNVRSYTIMIWKFCKQ--------- 431
                                 FE++   +  G   +V SY+ MI +FCK          
Sbjct: 402 PDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEV 461

Query: 432 -----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMK 479
                      N+ VY  LI GF    +++    +  EM   GC P  +TYN LI  L K
Sbjct: 462 YKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCK 521

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
            +K   EA  + KEM+  GFKP I TY  +++   +    ++  ++WDE++  G   D  
Sbjct: 522 AEKY-QEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVM 580

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            + +LI GL S  +  EA+    EM EK     ++ YN  
Sbjct: 581 VHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTL 620



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 15/232 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN   Y  L+ G+CRV  + +A +++ EM   G  P ++ +N +++GL K  K  +A  L
Sbjct: 472 PNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSL 531

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M  +G  P++R+Y  +I   C+                +++D+   +  E+ + G  
Sbjct: 532 TKEMLERGFKPDIRTYASLIRGLCRD---------------KKVDVALRIWDEILDAGLQ 576

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            D + +N LI  +      DEA  IY EM      P + TYN +M  +++ G+ +    +
Sbjct: 577 VDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASL 636

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           W  ++  G  PD  +Y   I GL S +R+ E    L E+L  G+   V+ ++
Sbjct: 637 WTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWS 688



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 18/244 (7%)

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
             +   +N F    +   A+ I+  M        + T N L++ L +++  +EA  L  +
Sbjct: 475 HVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKE 534

Query: 340 LKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           +  R F P++ TY  L+ G CR K +  A R+W+E++D G + DV+ HNI++ GL   GK
Sbjct: 535 MLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGK 594

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
             +A  ++  MK K  SPN+                 Y  L+ GF     +D    L   
Sbjct: 595 VDEAFCIYLEMKEKNCSPNL---------------VTYNTLMDGFYEIGSIDKAASLWTA 639

Query: 459 MEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           + + G  PD +TYN  IK L    + P E V +  E++ +G  PT+ T+++++++  + G
Sbjct: 640 ILDNGLKPDIVTYNTRIKGLCSCNRTP-EGVLLLNEVLATGIMPTVITWSILVRAVIKYG 698

Query: 518 NYEM 521
             ++
Sbjct: 699 PIQI 702



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 171/409 (41%), Gaps = 34/409 (8%)

Query: 209 LSHNLVVDVLERFRHARRP-----AFR-FFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
            S +  + VL  F  A  P     AFR      G  PG     R++N+++    RAR++ 
Sbjct: 81  FSESAALVVLSAFSRALMPDAALAAFRDLPSLLGCNPGV----RSHNTLLDAFVRARRYS 136

Query: 263 TMVSMLEEM-----GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
              +    +     G +   +++T+ I + +  A  +  +AV++F  + +        T 
Sbjct: 137 DADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTY 196

Query: 318 NCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI- 375
           + L+  L +      A  L D++  +    +   Y  LL G  R     +A +VW +++ 
Sbjct: 197 STLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVR 256

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
           D G  P++  + +ML+GL K+G+  +A +++  M A     +  +Y I+I   C+     
Sbjct: 257 DPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSG--- 313

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
                        +D    +  +M + G   D   YN+LIK         EA + +    
Sbjct: 314 ------------DVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTG 361

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRS 554
            SG +  I TYN++ K    +G      ++  ++     C PD  ++  LI GL     +
Sbjct: 362 FSGIR-QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYA 420

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             A++ LE+    G +  V  Y+       + GR++  +E+ + M   G
Sbjct: 421 NRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDG 469


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 192/466 (41%), Gaps = 77/466 (16%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++ N++VD L +       AF+ F           N  TY ++++ L +  + +  + +L
Sbjct: 101 ITFNILVDALVKSGRVEE-AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL 159

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           + M E G   ++ T+ + +     A    K   + + M +  F+  V   N LL  L +S
Sbjct: 160 DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKS 219

Query: 328 KLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           +   EA +L+   ++    P + TY  L+  +CR K +  A R+   M ++G  PDV+ +
Sbjct: 220 RRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINY 279

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKF------ 428
           N ++ GL +  +  DA  L + M A    P+V +Y+ +I            WK       
Sbjct: 280 NTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEI 339

Query: 429 --------CKQNAAVYTCLITGFGNRRR-------------------------------- 448
                   C  NA  Y  +I G    R+                                
Sbjct: 340 LEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK 399

Query: 449 ---MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +D  Y +   M ER C P+ + Y ALI  +      D+AVR+++ MV S F+P + T
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVAT 458

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++      G  E   ++ + MI + C PD  SY  LI GL       EAY+  + + 
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVE 518

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
            KG    V  YN             +++EL +K R S    V+N L
Sbjct: 519 AKGFAMEVGVYN------------VLVNELCKKKRLSDAHGVANKL 552



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 162/365 (44%), Gaps = 24/365 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY S++  L +A + +    +L+EM ++G+   +      +     A     A+  F
Sbjct: 29  NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYF 88

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCR 360
           + +   K    + T N L++ L +S   +EA  +F+ +    +  PN+ TYT ++ G C+
Sbjct: 89  KTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCK 148

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              L  A  + + M + G  P+V+ +++++EGL K G+      L + M  +G  P+V  
Sbjct: 149 DGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIM 208

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           Y  ++   CK                RR+D   +L++ M   GC P  +TYN+L++L   
Sbjct: 209 YNTLLNGLCKS---------------RRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            K  D A R+ + M   G  P +  YN ++    +    +  + +  +M+   C PD  +
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 541 YTVLIGGLISQDRSGEAYK------YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
           Y+ +I GL    R    +K       LE M + G       Y      L RA +S     
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 595 LAQKM 599
           L ++M
Sbjct: 374 LLRRM 378



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 158/339 (46%), Gaps = 19/339 (5%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           N  +++L RA Q    V +  E  E+ + +  T+   ++    A +  +A  + + M   
Sbjct: 2   NCALNLLVRAGQHGQAVQLFRE--ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR 59

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEA 367
               GV   N ++  L ++    +A   F  +   + TP++ T+ +L+    +   + EA
Sbjct: 60  GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 368 GRVWNEM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
            +++  M       P+VV +  ++ GL K GK   AI+L ++M   G  PNV +Y++++ 
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
             CK                 R D  + LL+EM  RG  PD + YN L+  +   +  DE
Sbjct: 180 GLCKAG---------------RTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+ + + M+RSG  PT+ TYN +M+ + ++   +   ++   M  RGC PD  +Y  +I 
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           GL    R  +A   L++M+       V+ Y+     L +
Sbjct: 285 GLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 16/226 (7%)

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P+   +  ++ GL K GK   A +L + M+ +G  P V  +  +I   CK          
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGR------- 80

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGF 499
             FG+           K +    C PD +T+N L+  +      +EA +I++ M   S  
Sbjct: 81  --FGD------ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQC 132

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY  ++    + G  +   ++ D M   GCCP+  +Y+VL+ GL    R+ + + 
Sbjct: 133 LPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            L+EM  +G +  V+ YN     L ++ R     EL Q M  SG +
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY 238



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 158/333 (47%), Gaps = 26/333 (7%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++++  R +   R AFR      ++ G   +   YN++++ L R  + +   ++L
Sbjct: 242 VTYNSLMELFCRSKQVDR-AFRLIQVMSER-GCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 269 EEM-GEKGLLSMETFKIAMNAFA------AAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           ++M   + +  + T+   ++         A  + + A  I E+M +        T   ++
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           E L R++  ++A  L  + +     P+L+++++++G  C+  +L  A +++  M ++  K
Sbjct: 360 EGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECK 419

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P+ VA+  +++GL K G+   A+++FE+M        V S+        +   A Y  ++
Sbjct: 420 PNPVAYAALIDGLSKGGEVDKAVRVFELM--------VESF--------RPGVATYNSVL 463

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G     R++    +++ M  + C PDG +Y ALI+ +      +EA  +++ +   GF 
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
             +  YN+++    +         V +++I  G
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
          Length = 521

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 198/423 (46%), Gaps = 32/423 (7%)

Query: 168 TSVSYKSTADPREI-------ERVCKVIDELFSLDRNMEAVLDECGINLS---HNLVVDV 217
            +VS   + DPR +        R  ++ D    L+R     L  C  ++S    ++VVD 
Sbjct: 85  AAVSRLGSLDPRSLTFSLLSLRRAGRLADAAGLLER----ALGSCPGSVSPFAASVVVDG 140

Query: 218 L---ERFRHARRPAFRFFCWAGDKP--GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           L    R   ARR          D P  G + N+  YNS++    R +    +  +LE M 
Sbjct: 141 LCKSGRVDDARR-------LLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIME 193

Query: 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLP 330
            +G+  ++ T+ I +++ + A++  K  A+F  M        V     ++    R+  + 
Sbjct: 194 NEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMR 253

Query: 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           + A++L + + +   PN  TY VL+ G+C++  +  A  +  +M  +G   + +  N M+
Sbjct: 254 RAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMI 313

Query: 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----NAAVYTCLITGFGNR 446
           +G  + G   DA+K+   M+  G   N+ +Y  +    C+     N   YT LI+     
Sbjct: 314 DGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISIHCKD 373

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             M     L +EM E+G  P  LTY+ +I     +    EA R  KEM + GF P ++TY
Sbjct: 374 GDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTY 433

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
             ++  +   G  ++  K+++EM +RG  P+  +YT LI GL  + RS  A++  ++ML+
Sbjct: 434 ASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLK 493

Query: 567 KGM 569
            G+
Sbjct: 494 AGL 496



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 160/343 (46%), Gaps = 6/343 (1%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L++M   G+ L+   +   ++ +   K+  +   I E+M     +A V T   L+++L 
Sbjct: 153 LLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLS 212

Query: 326 RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++   + + LF+++K +    ++  YT ++  +CR  N+  A +V +E +  G +P+  
Sbjct: 213 TARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNER 272

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----NAAVYTCLI 440
            + ++++G  KIG+   A  L   M+ +G   N   +  MI  +C++    +A      +
Sbjct: 273 TYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAM 332

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
              G    +     L   +   G  P+ +TY  LI +        EA R+++EM   G  
Sbjct: 333 EKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGAT 392

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P++ TY++++  Y + G      +   EM ++G  PD  +Y  L+ G     +   A K 
Sbjct: 393 PSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL 452

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EEM ++G +  V+ Y    + L++ GRS    +L   M  +G
Sbjct: 453 FEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAG 495



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 36/257 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N RTY  ++    +  Q E    +L +M  +G+ L+   F   ++ +        A
Sbjct: 266 GVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA 325

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + I   M K   +  + T N L   L R  +                PN  TYT L+   
Sbjct: 326 LKIKAAMEKIGVELNIYTYNTLACGLCRMGV---------------VPNYVTYTTLISIH 370

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+  +++EA R++ EM +KG  P V+ +++M+ G  K G+  +A +  + M+ KG  P+V
Sbjct: 371 CKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDV 430

Query: 419 RSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y  ++   C                    + N   YT LI+G     R +  + L  +
Sbjct: 431 YTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDD 490

Query: 459 MEERGCPPDGLTYNALI 475
           M + G  PD   Y+AL+
Sbjct: 491 MLKAGLIPDDSLYSALV 507



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 40/326 (12%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           + +++ L +S    +A+ L D + +H  + N   Y  LL  + R K+      +   M +
Sbjct: 135 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN 194

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----- 431
           +G +  V  + I+++ L      S    LF  MKA     +V  YT +I  +C+      
Sbjct: 195 EGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRR 254

Query: 432 ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                          N   Y  LI GF    +M+    LL +M+ +G   + + +N +I 
Sbjct: 255 AAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMID 314

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN-------------------MIMKSYFQTG 517
               + M D+A++I   M + G +  I+TYN                    ++  + + G
Sbjct: 315 GYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISIHCKDG 374

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +    R+++ EM  +G  P   +Y+V+I G   + R  EA ++ +EM +KG    V  Y 
Sbjct: 375 DMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTYA 434

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                    G+  V  +L ++M+  G
Sbjct: 435 SLVHGHCVNGKVDVALKLFEEMKQRG 460


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G+  ++R Y +++    R R+ +    ML+EM EKGL   + T    +NA+        A
Sbjct: 284 GWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 343

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + + ELM     K  V T N L++         +A  L +K++     P+  TY +L+ G
Sbjct: 344 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 403

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C   ++  A R+   M   G   D   +N ++  L K G+   A  LF+ ++ +G  PN
Sbjct: 404 QCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPN 463

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             ++  +I   CK   A               DI +  L++M   GC PD  TY++ I+ 
Sbjct: 464 AVTFNSLINGLCKSGKA---------------DIAWKFLEKMVSAGCTPDTYTYSSFIEH 508

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   K   E +    EM++   KP+   Y +++    +  NY +  + W EM+  GC PD
Sbjct: 509 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 568

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +YT  +     + R  EA   L EM + G+    + YN      +  G++
Sbjct: 569 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQT 620



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 167/368 (45%), Gaps = 27/368 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G+  ++ T+NS++    R  Q +    + ++M  +G    + ++   +     A    
Sbjct: 181 RSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRID 240

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +AV +F  M++      +     L++ L  ++  +E  L+  ++K   + P+   Y  ++
Sbjct: 241 EAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV 296

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR +   EA  +  EM +KG  P VV    ++    K G+ SDA+++ E+MK +G  
Sbjct: 297 DFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG-- 354

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        CK N   Y  L+ GF N  ++     LL +M   G  PD +TYN LI
Sbjct: 355 -------------CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 401

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           +   I    + A R+ + M   G     +TYN ++ +  + G  +    ++D +  RG  
Sbjct: 402 RGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK 461

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-----SRAGRSY 590
           P+  ++  LI GL    ++  A+K+LE+M+  G       Y+ F   L     S+ G S+
Sbjct: 462 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 521

Query: 591 VLDELAQK 598
           +  E+ QK
Sbjct: 522 I-GEMLQK 528



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 151/344 (43%), Gaps = 25/344 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   + +     +  +A+    LM +  ++    T N L+    R+     A+ LFDK+
Sbjct: 155 TYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 214

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R F  ++ +Y  L+ G C    + EA  ++ EM     +PD+  +  +++GL    + 
Sbjct: 215 PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD----QPDMHMYAALVKGLCNAERG 270

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------------------VYTC--L 439
            + + +   MK  G  P+ R+Y  ++   C++  A                  V TC  +
Sbjct: 271 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAV 330

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I  +    RM     +L+ M+ RGC P+  TYNAL++    +    +A+ +  +M   G 
Sbjct: 331 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGV 390

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P   TYN++++     G+ E   ++   M   G   D  +Y  LI  L    R+ +A  
Sbjct: 391 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 450

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + +  +G+K   + +N     L ++G++ +  +  +KM  +G
Sbjct: 451 LFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG 494



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 20/277 (7%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTP---NLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           LL +L R  L   A  LF  + HR  P      TY  ++   CR  +L  A R  + M+ 
Sbjct: 123 LLAHLSRFALAPLALRLFAHM-HRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVR 181

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC------- 429
            G++PD    N ++ G  +  +   A  LF+ M  +G + +V SY  +I   C       
Sbjct: 182 SGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDE 241

Query: 430 ---------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                    + +  +Y  L+ G  N  R +    +L+ M+E G  P    Y A++     
Sbjct: 242 AVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCR 301

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           ++   EA  + +EM   G  P + T   ++ +Y + G      +V + M  RGC P+  +
Sbjct: 302 ERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWT 361

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           Y  L+ G  ++ +  +A   L +M   G+    + YN
Sbjct: 362 YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN 398



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/389 (20%), Positives = 155/389 (39%), Gaps = 39/389 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ TYN ++         E+   +L  M   GL++ + T+   +NA        +A
Sbjct: 389 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 448

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            ++F+ +     K    T N L+  L +S     A    +K+     TP+  TY+  +  
Sbjct: 449 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEH 508

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++K   E      EM+ K  KP  V + I++  LLK        + +  M + G +P+
Sbjct: 509 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 568

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT  +  +C +                    +   Y  L+ G  +  + D    +LK
Sbjct: 569 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILK 628

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPD----------------EAVRIYKEMVRSGFK 500
           +M      P+  TY  L++ L++++ + D                +   ++  M ++ F 
Sbjct: 629 QMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFL 688

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TY+ I++ + + G  E    +   M       +++ YT L+       R  +A+  
Sbjct: 689 PNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVL 748

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           +  M++ G    ++ Y    + L   G++
Sbjct: 749 VCSMIQHGFIPQLMSYQHLLSGLICEGQT 777



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/443 (20%), Positives = 165/443 (37%), Gaps = 88/443 (19%)

Query: 205 CGIN---LSHNLVVDVLERFRHARRPAFRFF-CWAGDKPGFAHNSRTYNSMMSIL---GR 257
           CG+N   +++NL++       H    AFR      GD  G   +  TYN++++ L   GR
Sbjct: 388 CGVNPDAVTYNLLIRGQCIDGHIES-AFRLLRLMEGD--GLIADQYTYNALINALCKDGR 444

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
             Q  ++   LE  G K   +  TF   +N    + +   A    E M          T 
Sbjct: 445 TDQACSLFDSLETRGIKP--NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTY 502

Query: 318 NCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +  +E+L + K  +E    + + L+    P+   YT+++    + +N     R W EM+ 
Sbjct: 503 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVS 562

Query: 377 KGFKPDVV-----------------------------------AHNIMLEGLLKIGKRSD 401
            G  PDVV                                   A+N +++G   IG+   
Sbjct: 563 SGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH 622

Query: 402 AIKLFEVMKAKGPSPNVRSYTIM--------------------IWKFCK----------- 430
           A+ + + M +    PN  +Y I+                    +WK  +           
Sbjct: 623 AVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVM 682

Query: 431 ------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N+  Y+ ++ GF    R +    L+  M+E     +   Y AL+      K  
Sbjct: 683 KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRY 742

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A  +   M++ GF P + +Y  ++      G  +  ++++     +   PD+  + V+
Sbjct: 743 LDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVI 802

Query: 545 IGGLISQ---DRSGEAYKYLEEM 564
           I GLI +   D S E    LE M
Sbjct: 803 IDGLIKKGHSDISREMIIMLERM 825



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/379 (18%), Positives = 139/379 (36%), Gaps = 74/379 (19%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N+ T+NS+++ L ++ + +     LE+M   G      T+   +      K  ++ 
Sbjct: 459 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 518

Query: 299 VA-IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           ++ I E++ K    + V+    + + L        A+   + +     P++ TYT  +  
Sbjct: 519 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 578

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR------------------ 399
           +C    L EA  V  EM   G   D +A+N +++G   IG+                   
Sbjct: 579 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 638

Query: 400 ----------------------------------SDAIKLFEVMKAKGPSPNVRSYTIMI 425
                                             +D   LF+VMK     PN  +Y+ ++
Sbjct: 639 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 698

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F +                     N  +YT L+T F   +R    + L+  M + G  
Sbjct: 699 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 758

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  ++Y  L+  +  +   D+A  I+       + P    + +I+    + G+ ++ R++
Sbjct: 759 PQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 818

Query: 526 WDEMIRRGCCPDDNSYTVL 544
              + R  C P   +Y +L
Sbjct: 819 IIMLERMNCRPSHQTYAML 837


>gi|326491941|dbj|BAJ98195.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 513

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 210/481 (43%), Gaps = 54/481 (11%)

Query: 177 DPREIERVCKVIDELFS-----LDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRF 231
           DP  + R+C ++ +  +     L R + A+           L +    RF  + RP  R 
Sbjct: 28  DPALLVRLCTILYQQQNAPDAVLQRRLSALPLPSAPADLRELFLQASARFPLSWRPVQRL 87

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291
                 + GFAH+  T    + +L ++   + + S L  +   GLLS    + A+   A 
Sbjct: 88  LAHLTARHGFAHSPATAARFLDVLAKSSNVDLLHSTLLAL-PTGLLSDAALRAAIRGLAP 146

Query: 292 AKERKKAVAIFELM---NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF--TP 346
           A+E  K  A+  L     + +  A V  + C +      KLP  A+ +  + +HR+   P
Sbjct: 147 AREVGKVSALLTLFPEAQRPRVLAFVVDVVCSV-----CKLPDVAEKVVKQAEHRYGLAP 201

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
                 +L+  +CR     +A  VWN M  +G +P   A+  ++  L K  +  DA+K+F
Sbjct: 202 CGRCCDLLVVAYCRAGMFADACSVWNGMEKRGIEPGAAAYEEIVVTLFKNNRIPDAMKVF 261

Query: 407 EVMKAKGPSPNVRS--YTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           + M+ +  S       Y  ++   CK+                    +  V   L+ G  
Sbjct: 262 DGMRKRRLSAGGGGACYHAVVSWLCKEGRTWSAFMVLAEMFKRGVGVDGEVLGDLVYGLL 321

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
            RRR+   Y +   ++E+    D   Y+ L+K +   K   EA  +++EMV SG +P +H
Sbjct: 322 ARRRVREGYSVFHGVKEK----DIALYHGLMKGLVRIKRAGEATEVFREMVASGCEPNMH 377

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY M+++ +      + GRK  D ++        N  ++ +GGL+   R+ EA K++E  
Sbjct: 378 TYIMLLQGHLG----KRGRKGRDPLV--------NFESIFVGGLVKAGRTLEATKFVERT 425

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYR 624
           +  G+  P  DYNKF    S      + +E+ +++R +G  ++ ++   + E    R  R
Sbjct: 426 MWGGVDVPRFDYNKFLHYFSNDEGVAMFEEVGRRLRETGHVDLGDIFLTYGERMATRDKR 485

Query: 625 K 625
           +
Sbjct: 486 R 486


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 204/449 (45%), Gaps = 26/449 (5%)

Query: 161 NNSESEITSVSYK-STADP--REI-ERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVD 216
           N+ ESE     +K S  DP  R + ER  +++ ++F    + E  L+   + + H LV  
Sbjct: 40  NHEESEKPQEKWKLSRKDPSVRMLDERFIRIV-KIFKWGPDAEKALEVLKLKVDHRLVRS 98

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           +LE          +FF WAG +  F H+  TY +++  L  AR +  M   ++E+     
Sbjct: 99  ILE-IDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTY 157

Query: 277 LSMETFKIA--MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
           +S+    ++  + A   AK   KA+++F      K K    T N ++  L +    ++  
Sbjct: 158 VSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVH 217

Query: 335 LLFDKLKHRFT--PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
            ++ ++ +     P+  TY+ L+  + ++     A R+++EM D   +P    +  +L  
Sbjct: 218 EVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGI 277

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
             K+GK   A+ LFE MK  G SP V  YT             YT LI G G   R+D  
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTV--YT-------------YTELIKGLGKAGRVDEA 322

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           Y   K+M   G  PD +  N L+ ++      +E   ++ EM      PT+ +YN ++K+
Sbjct: 323 YGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKA 382

Query: 513 YFQTGNYEMGRKVW-DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            F++  +      W D+M      P + +Y++LI G    +R  +A   LEEM EKG   
Sbjct: 383 LFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMR 600
               Y      L +A R    +EL ++++
Sbjct: 443 CPAAYCSLINALGKAKRYEAANELFKELK 471



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 156/343 (45%), Gaps = 18/343 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAKERK 296
           + G +    TY  ++  LG+A + +      ++M   GL     F    MN        +
Sbjct: 296 RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKL-PKEAQLLFDKLK-HRFTPNLTTYTVL 354
           +   +F  M  ++    V + N +++ L  SK    E    FDK+K    +P+  TY++L
Sbjct: 356 ELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSIL 415

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+   + +A  +  EM +KGF P   A+  ++  L K  +   A +LF+ +K    
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN-- 473

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                        F   ++ VY  +I  FG   ++    DL  EM+ +G  PD   YNAL
Sbjct: 474 -------------FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  M    M +EA  + ++M  +G +  I+++N+I+  + +TG      ++++ +   G 
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            PD  +Y  L+G         EA + + EM +KG +   + Y+
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYS 623



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 168/383 (43%), Gaps = 24/383 (6%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIF 302
           S TYNS++ +L +  Q E +  +  EM  +G       T+   ++++        A+ +F
Sbjct: 197 SSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLF 256

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M     +        LL    +    ++A  LF+++K    +P + TYT L+ G  + 
Sbjct: 257 DEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKA 316

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA   + +M+  G  PDVV  N ++  L K+G+  +   +F  M     +P V SY
Sbjct: 317 GRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSY 376

Query: 422 TIMIWKFCKQNAAV---------------------YTCLITGFGNRRRMDIVYDLLKEME 460
             +I    +  A V                     Y+ LI G+    R++    LL+EM+
Sbjct: 377 NTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMD 436

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           E+G PP    Y +LI  +   K  + A  ++KE+  +    +   Y +++K + + G   
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               +++EM  +G  PD  +Y  L+ G++      EA   L +M E G +A +  +N   
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
              +R G      E+ + ++ SG
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSG 579



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 162/377 (42%), Gaps = 26/377 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TY++++S   +  + ++ + + +EM +  +   E  +   +  +    + +KA+ +FE M
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +      V T   L++ LG++    EA   + D L+   TP++     L+    +V  +
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTI 423
            E   V++EM      P VV++N +++ L +     S+    F+ MKA   SP+  +Y+I
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSI 414

Query: 424 MIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  +CK N                     A Y  LI   G  +R +   +L KE++E  
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
                  Y  +IK         EAV ++ EM   G  P ++ YN +M    + G      
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEAN 534

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M   GC  D NS+ +++ G         A +  E +   G+K   + YN      
Sbjct: 535 SLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594

Query: 584 SRAGRSYVLDELAQKMR 600
           + AG   + +E A+ MR
Sbjct: 595 AHAG---MFEEAARMMR 608



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 2/165 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           +SR Y  M+   G+  +    V +  EM  +G    +  +   M+    A    +A ++ 
Sbjct: 478 SSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLL 537

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M +   +A +++ N +L    R+ +P+ A  +F+ +KH    P+  TY  LLG +   
Sbjct: 538 RKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHA 597

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
               EA R+  EM DKGF+ D + ++ +L+ +  +    D +  F
Sbjct: 598 GMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642


>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
 gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 179/391 (45%), Gaps = 30/391 (7%)

Query: 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +NL  + V   L  + +  + A  FF W   +  F H + TYN M+ ILG+  +F+    
Sbjct: 42  LNLDSSTVFQTLSCYNNDWKRALDFFNWVETESQFQHTTETYNRMIDILGKFFEFDLSWD 101

Query: 267 MLEEMGEKGLLS--METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL-EN 323
           +++ M      +    TF++  + + +A    +AV+++E   K +F    +T  C+L + 
Sbjct: 102 LIQRMRNNPFSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLK-EFGLKDETSYCILVDA 160

Query: 324 LGRSKLPKEA-QLLFDKLKHRFTPNLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           L   K   EA +L F    +       T  Y ++L GW ++    +    W EM  K   
Sbjct: 161 LCEYKHVIEAHELCFGNNNNSINVRNITKIYNMILRGWFKMGWWGKCREFWEEMDRKEVC 220

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF------------ 428
            D+ +++I ++ L K GK   A+KL++ MK+KG   +V +Y  +I               
Sbjct: 221 KDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEGVDFVLRV 280

Query: 429 --------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                   C+ N      +I       R+   Y +L EM +    PD  TY+   + ++ 
Sbjct: 281 YREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYHCFFRCLE- 339

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
              P E + ++ +M+ +G  P + TY M+M+ + + G       VW +M + GC PD+ +
Sbjct: 340 --KPKEILCLFDQMIENGVCPRMDTYVMLMRKFGRWGFLRPVFLVWKKMEKLGCSPDEFA 397

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           Y  LI  LI +     A KY EEM+ KG+ A
Sbjct: 398 YNALIDALIQKGMVDMARKYDEEMMAKGLSA 428



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +   YN++++ +G +   + ++ +  EM E G   ++ T    +         K+A
Sbjct: 253 GIKLDVVAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIKEA 312

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             + + M +      V T +C    L +   PKE   LFD++ ++   P + TY +L+  
Sbjct: 313 YKMLDEMPQSYIAPDVFTYHCFFRCLEK---PKEILCLFDQMIENGVCPRMDTYVMLMRK 369

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   L     VW +M   G  PD  A+N +++ L++ G    A K  E M AKG S  
Sbjct: 370 FGRWGFLRPVFLVWKKMEKLGCSPDEFAYNALIDALIQKGMVDMARKYDEEMMAKGLSAK 429

Query: 418 VR 419
            R
Sbjct: 430 PR 431



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YNMI++ +F+ G +   R+ W+EM R+  C D +SY++ +  L    +  +A K  +EM 
Sbjct: 191 YNMILRGWFKMGWWGKCREFWEEMDRKEVCKDLHSYSIYMDILCKSGKPWKAVKLYKEMK 250

Query: 566 EKGMKAPVLDYN 577
            KG+K  V+ YN
Sbjct: 251 SKGIKLDVVAYN 262


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 179/392 (45%), Gaps = 31/392 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           +P F    +   S    + + +Q+ T+VS+  +M   G+   + T  I +N+        
Sbjct: 83  RPSFVELGKFLGS----IAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIH 138

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            AV++   M K   +    T   L+  L      KEA  LF+++  R   PN  T+T+L+
Sbjct: 139 FAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILV 198

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+   + EA  V+  M +KG +P++  +N ++ G     + +DA K+FE+M  KG +
Sbjct: 199 DVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCA 258

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+V SY+I+I  +CK                     N   Y  L+ G  +   +    +L
Sbjct: 259 PSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQEL 318

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            K+M   G  P+  TY+ L+  +      +EA+++   M     +P I  YN++++  F 
Sbjct: 319 FKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFI 378

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  E+ ++++ ++   G  P   +Y ++I GL+ +  S EAYK   +M + G       
Sbjct: 379 AGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCS 438

Query: 576 YN----KFAADLSRAGRSYVLDELAQKMRFSG 603
           YN     F  +   +    ++DE+  + RFS 
Sbjct: 439 YNVIIQGFLQNQDPSTAIQLIDEMVGR-RFSA 469



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 22/362 (6%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFA 290
            C   D  G AHN  T N +++ L R       VS+L +M + G+     TF   +N   
Sbjct: 108 LCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLC 167

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
                K+AV +F  M          T   L++ L +  +  EA+ +F+ +  +   PN+ 
Sbjct: 168 NEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIY 227

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY  L+ G+C    + +A +V+  M+ KG  P V +++I++ G  K  +  +A  L   M
Sbjct: 228 TYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQM 287

Query: 410 KAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRM 449
             K   PN  +Y  ++   C                      N   Y+ L+ G      +
Sbjct: 288 SEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHL 347

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           +    LL  M+ER   PD + YN LI+ M I    + A  ++ ++  +G +P++ TYN++
Sbjct: 348 EEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIM 407

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +K   + G  +   K++ +M   G  PD  SY V+I G +       A + ++EM+ +  
Sbjct: 408 IKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRF 467

Query: 570 KA 571
            A
Sbjct: 468 SA 469



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ T+  ++ +L +         + E M EKG+  ++ T+   MN +    E   A  +F
Sbjct: 190 NTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVF 249

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E+M        V + + L+    +S+   EA+ L  ++  +   PN  TY  L+ G C  
Sbjct: 250 EIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHA 309

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            +L+EA  ++ +M   G  P++  ++I+L+GL K G   +A+KL   M+ +   P++   
Sbjct: 310 SSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDI--- 366

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                        +Y  LI G     ++++  +L  ++   G  P   TYN +IK +  +
Sbjct: 367 ------------VLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKE 414

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
            + DEA +++++M   GF P   +YN+I++ + Q  +     ++ DEM+ R    D +++
Sbjct: 415 GLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTF 474

Query: 542 TVLI 545
            +L+
Sbjct: 475 KMLL 478



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           F+  C +G  P    N RTY+ ++  L +    E  + +L  M E+ L   +  + I + 
Sbjct: 319 FKKMCSSGMLP----NLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQ 374

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
               A + + A  +F  +     +  V T N +++ L +  L  EA  LF K++   F P
Sbjct: 375 GMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           +  +Y V++ G+ + ++   A ++ +EM+ + F  D     ++L+
Sbjct: 435 DSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 31/386 (8%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N++++ LG+AR+F  M  ++ +M +  +  ++ TF I +N     +    A+ +FE M  
Sbjct: 156 NALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKG 215

Query: 308 YKFKAGV----DTI--NCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCR 360
            K +  V    DTI  N L++ L +    +EA  L  K++  +  P   T+  L+ G+CR
Sbjct: 216 EKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCR 275

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              +  A +++NEM +   +P+V+  N +++G+ K  + S A++ F VM+ KG   N  +
Sbjct: 276 SGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVT 335

Query: 421 YTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEME 460
           YT+ I  FC  N                    A VY  LI G     R+D    ++ +++
Sbjct: 336 YTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLK 395

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           E G   D + YN LI     +   D A     EM  +G KP   TYN ++  + + GN++
Sbjct: 396 EAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFK 455

Query: 521 MGRKVWDEMI-RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP--VLDYN 577
           +  K   +M    G  P   +Y  LI      +   EA K  +EM     K P   + YN
Sbjct: 456 LAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYN 515

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                L +  +      L   M+F G
Sbjct: 516 ILIDSLCKQTQVNFALSLLDDMKFRG 541



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 183/432 (42%), Gaps = 35/432 (8%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG----FAHNSRTYNS 250
           D N++  +   GI ++H      L +FR        F    G+K       A ++  YN+
Sbjct: 180 DMNIQPTVITFGILINH------LCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNT 233

Query: 251 MMSILGR-ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           ++  L +  RQ E +  M +   ++   +  TF   +N +  + E + A  +F  M   +
Sbjct: 234 LIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQ 293

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
            +  V T+N L++ + +      A   F  ++ +    N  TYTV +  +C V N+ +A 
Sbjct: 294 IEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAM 353

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
              +EM   G  PD V +  ++ GL + G+  DA  +   +K  G   +   Y ++I +F
Sbjct: 354 EFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEF 413

Query: 429 CKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEM-EERGCPPD 467
           CK+N                    +  Y  LI+ F       + +  +K+M EE G  P 
Sbjct: 414 CKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPT 473

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEM--VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
             TY ALI    +    DEA++I+KEM  V S   P    YN+++ S  +         +
Sbjct: 474 VFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSL 533

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            D+M  RG  P+  +Y  +   L  ++   +A+K ++ M+E+      +        LS 
Sbjct: 534 LDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSA 593

Query: 586 AGRSYVLDELAQ 597
            G    L +  Q
Sbjct: 594 VGEITKLKKFTQ 605



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 32/291 (10%)

Query: 304 LMNKYKFKAGVDTINCLLENL-------GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           L+ + +F+    T   +  NL       GR K  + A L+    KH   P+    T L+ 
Sbjct: 66  LLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLIS 125

Query: 357 GWCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             CR  N   A  +  N M+  G K D    N +L GL K  +      L   MK     
Sbjct: 126 KLCRSGNTNLAWNILDNLMMLNGLK-DAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQ 184

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG------CPPDGL 469
           P V ++ I+I   CK                RR+D   ++ ++M+           PD +
Sbjct: 185 PTVITFGILINHLCK---------------FRRIDDALEVFEKMKGEKEETKVFVAPDTI 229

Query: 470 TYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
            YN LI  L K+ +  +EA+ +  +M      PT  T+N ++  Y ++G  E+  K+++E
Sbjct: 230 MYNTLIDGLCKVGRQ-EEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNE 288

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           M      P+  +   L+ G+   +R   A ++   M +KG+K   + Y  F
Sbjct: 289 MENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVF 339


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 192/466 (41%), Gaps = 77/466 (16%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++ N++VD L +       AF+ F           N  TY ++++ L +  + +  + +L
Sbjct: 101 ITFNILVDALVKSGRVEE-AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL 159

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           + M E G   ++ T+ + +     A    K   + + M +  F+  V   N LL  L +S
Sbjct: 160 DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKS 219

Query: 328 KLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           +   EA +L+   ++    P + TY  L+  +CR K +  A R+   M ++G  PDV+ +
Sbjct: 220 RRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINY 279

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI------------WKF------ 428
           N ++ GL +  +  DA  L + M A    P+V +Y+ +I            WK       
Sbjct: 280 NTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEI 339

Query: 429 --------CKQNAAVYTCLITGFGNRRR-------------------------------- 448
                   C  NA  Y  +I G    R+                                
Sbjct: 340 LEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK 399

Query: 449 ---MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +D  Y +   M ER C P+ + Y ALI  +      D+AVR+++ MV S F+P + T
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVAT 458

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++      G  E   ++ + MI + C PD  SY  LI GL       EAY+  + + 
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVE 518

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
            KG    V  YN             +++EL +K R S    V+N L
Sbjct: 519 AKGFAMEVGVYN------------VLVNELCKKKRLSDAHGVANKL 552



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 159/339 (46%), Gaps = 19/339 (5%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           N  +++L RA Q    V +  E  E+ + +  T+   ++    A +  +A  + + M   
Sbjct: 2   NCALNLLVRAGQHGQAVQLFRE--ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR 59

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEA 367
               GV   N +++ L ++    +A   F  +   + TP++ T+ +L+    +   + EA
Sbjct: 60  GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 368 GRVWNEM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
            +++  M       P+VV +  ++ GL K GK   AI+L ++M   G  PNV +Y++++ 
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
             CK                 R D  + LL+EM  RG  PD + YN L+  +   +  DE
Sbjct: 180 GLCKAG---------------RTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+ + + M+RSG  PT+ TYN +M+ + ++   +   ++   M  RGC PD  +Y  +I 
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           GL    R  +A   L++M+       V+ Y+     L +
Sbjct: 285 GLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 162/365 (44%), Gaps = 24/365 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY S++  L +A + +    +L+EM ++G+   +      +     A     A+  F
Sbjct: 29  NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYF 88

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCR 360
           + +   K    + T N L++ L +S   +EA  +F+ +    +  PN+ TYT ++ G C+
Sbjct: 89  KTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCK 148

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              L  A  + + M + G  P+V+ +++++EGL K G+      L + M  +G  P+V  
Sbjct: 149 DGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIM 208

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           Y  ++   CK                RR+D   +L++ M   GC P  +TYN+L++L   
Sbjct: 209 YNTLLNGLCKS---------------RRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            K  D A R+ + M   G  P +  YN ++    +    +  + +  +M+   C PD  +
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 541 YTVLIGGLISQDRSGEAYK------YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
           Y+ +I GL    R    +K       LE M + G       Y      L RA +S     
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 595 LAQKM 599
           L ++M
Sbjct: 374 LLRRM 378



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 16/226 (7%)

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P+   +  ++ GL K GK   A +L + M+ +G  P V               AV+  +I
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGV---------------AVHNGVI 72

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGF 499
            G     R        K +    C PD +T+N L+  +      +EA +I++ M   S  
Sbjct: 73  KGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQC 132

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY  ++    + G  +   ++ D M   GCCP+  +Y+VL+ GL    R+ + + 
Sbjct: 133 LPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            L+EM  +G +  V+ YN     L ++ R     EL Q M  SG +
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY 238



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 158/333 (47%), Gaps = 26/333 (7%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +++N ++++  R +   R AFR      ++ G   +   YN++++ L R  + +   ++L
Sbjct: 242 VTYNSLMELFCRSKQVDR-AFRLIQVMSER-GCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 269 EEM-GEKGLLSMETFKIAMNAFA------AAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           ++M   + +  + T+   ++         A  + + A  I E+M +        T   ++
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
           E L R++  ++A  L  + +     P+L+++++++G  C+  +L  A +++  M ++  K
Sbjct: 360 EGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECK 419

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P+ VA+  +++GL K G+   A+++FE+M        V S+        +   A Y  ++
Sbjct: 420 PNPVAYAALIDGLSKGGEVDKAVRVFELM--------VESF--------RPGVATYNSVL 463

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G     R++    +++ M  + C PDG +Y ALI+ +      +EA  +++ +   GF 
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
             +  YN+++    +         V +++I  G
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 175/377 (46%), Gaps = 25/377 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y +M+ +L +   F     +L+EM E+ + +S +     +  +  A+   +A  +F  M 
Sbjct: 148 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 207

Query: 307 KYKFKAG-VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           +Y   A    T+  LL  L + +L  EAQ +FD  K  FTP++  YT L+  WCR   L 
Sbjct: 208 EYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRLD 267

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA RV+ EM   G  P+V  +  +++ + + G+   A +L   M   G  PN  ++  ++
Sbjct: 268 EAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIM 327

Query: 426 WKF--------------------CKQNAAVYTCLI-TGFGN-RRRMDIVYDLLKEMEERG 463
                                  C+ +   Y  L+ T  G  +  +D    +L  M  +G
Sbjct: 328 RAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKG 387

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C PD  T+N ++KL+ +    + A ++Y+ M     KP + TYN++M+ +    + +M  
Sbjct: 388 CIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVL 447

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML-EKGMKAPVLDYNKFAAD 582
           ++  +M  +G  P+ N+Y  LI     +     A+  L EM+ EK +K     Y+   A 
Sbjct: 448 RIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLAL 507

Query: 583 LSRAGRSYVLDELAQKM 599
           L +AG+    +EL + M
Sbjct: 508 LRKAGQLRRHEELVEMM 524



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 154/368 (41%), Gaps = 26/368 (7%)

Query: 192 FSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYN 249
           F L R++   + E  + +S  L++ ++ R+  A  P  A   F    +    A +  T  
Sbjct: 161 FPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLA 220

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           S++  L + R      +M +         +  +   ++A+  +    +A  +F  M +  
Sbjct: 221 SLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAG 280

Query: 310 FKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368
               V T   +++ + R+ ++P+  +LL   +     PN  T+  ++    +     +  
Sbjct: 281 VTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVL 340

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--DAIKLFEVMKAKGPSPNVRSYTIMIW 426
           +V N+M   G +PD++ +N ++E     G+ +   A+K+   M AKG  P+  ++  M+ 
Sbjct: 341 QVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLK 400

Query: 427 KF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
                                 CK N   Y  L+  F   + MD+V  + ++M+ +G  P
Sbjct: 401 LVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEP 460

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           +  TY ALI+    +     A    +EMV     KPT   Y+M++    + G      ++
Sbjct: 461 NVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEEL 520

Query: 526 WDEMIRRG 533
            + M+ RG
Sbjct: 521 VEMMVDRG 528



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 454 DLLKEMEERGC-PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           DL + MEE G   PD  T  +L+  +  +++  EA  ++ +  +S F P +  Y  ++ +
Sbjct: 201 DLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMF-DSYKSVFTPDVVLYTTLVHA 259

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + ++G  +   +V+ EM + G  P+  +YT +I  +    +   A + L +M++ G    
Sbjct: 260 WCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPN 319

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              +N       +AGRS  + ++  +MR  G
Sbjct: 320 TATFNAIMRAHVKAGRSEQVLQVHNQMRQLG 350


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 27/348 (7%)

Query: 222  RHARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
            +H R   A++ F     K G +    +YN ++  L      E    + ++M   G  + +
Sbjct: 764  KHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGC-APD 822

Query: 281  TFKIAMNAFAAAKERKKAVAIFEL---MNKYKFKAGVDTINCLLENLGRSK-LPKEAQLL 336
             F   M   A   +  K   +FEL   M   + K    T N ++ +L +S  L K     
Sbjct: 823  AFTFNM-LLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFF 881

Query: 337  FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +D +   F P   TY  L+ G  +V  L EA R++ EM D G KP+    NI++ G  KI
Sbjct: 882  YDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKI 941

Query: 397  GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVY 436
            G    A +LF+ M  +G  P+++SYTI++   C                      +   Y
Sbjct: 942  GDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAY 1001

Query: 437  TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
              +I G G  +RM+    L  EM  RG  PD  TYN+L+  + +  M ++A R+Y+E+  
Sbjct: 1002 NRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQL 1061

Query: 497  SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +G +P + TYN +++ Y  + N E    V+  M+  GC P+  +Y  L
Sbjct: 1062 AGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 171/383 (44%), Gaps = 24/383 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + +TY+++M  LG+ R  E ++ +L+EM + GL  ++ TF I +     A +  +A
Sbjct: 222 GLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEA 281

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             IF  M+       + T   L++ L  +   + A+ LF K+K +   P+   Y  LL  
Sbjct: 282 YEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDK 341

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +    +L      W++M   G+ PDVV   I+++ L K     +A   F+VM+ +G  PN
Sbjct: 342 FNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPN 401

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I                        +  A  Y   I  FG         +  +
Sbjct: 402 LHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFE 461

Query: 458 EMEERGCPPDGLTYNA-LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M+ +G  P+ +  NA L  L ++ ++  EA  ++  +  +G  P   TYNM+MK Y + 
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRL-REAKTMFNGLRENGLAPDSVTYNMMMKCYSKV 520

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +    +  EMIR GC PD      LI  L    R  EA++  + M +  +   V+ Y
Sbjct: 521 GQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTY 580

Query: 577 NKFAADLSRAGRSYVLDELAQKM 599
           N   + L + GR     EL + M
Sbjct: 581 NTLLSGLGKEGRVQKAIELFESM 603



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 213/499 (42%), Gaps = 33/499 (6%)

Query: 119 VVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADP 178
           V+ +SL+      N   S C  Y  VSS    ++    E  G+   + ++ V++K     
Sbjct: 4   VIVTSLSMFGTCCNGAFSECQVY--VSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKK 61

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECG---INLSHNLVVDVLERFRHARRPAFRFFCWA 235
           R+    C++  +      N E V+   G   I +S + V+ VL+      R A  +F   
Sbjct: 62  RK--DFCRLALQ------NPEQVMVVKGKTEIRVSEDEVLGVLKSMTDPIR-ALSYFYSI 112

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKE 294
            + P   H + T N M+  L    + E M ++ E M +K +   ++T+     A +    
Sbjct: 113 SEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGG 172

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTV 353
            ++   +   M K  F     + N L+  L +S    EA  ++ ++      P+L TY+ 
Sbjct: 173 LRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSA 232

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+    + ++      +  EM D G +P+V    I +  L + GK  +A ++F  M  +G
Sbjct: 233 LMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEG 292

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P++ +YT++I   C               N  +++   +L  +M+  G  PD + Y  
Sbjct: 293 CGPDLVTYTVLIDALC---------------NAGQLENAKELFVKMKANGHKPDQVIYIT 337

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L+         D     + +M   G+ P + T+ +++    +  +++     +D M ++G
Sbjct: 338 LLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             P+ ++Y  LI GL+   R  +A K L  M   G++     YN F     ++G +    
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAV 457

Query: 594 ELAQKMRFSGKFEVSNVLA 612
           E  +KM+  G   V N++A
Sbjct: 458 ETFEKMKAKGI--VPNIVA 474



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/399 (20%), Positives = 173/399 (43%), Gaps = 19/399 (4%)

Query: 213 LVVDVLERFR-HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           + + +L++F        F+ F    +  G+  +  T+  ++ +L +AR F+   +  + M
Sbjct: 334 IYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM 393

Query: 272 GEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
            ++G+L ++ T+   +     A   + A+ +   M     +    T N  ++  G+S   
Sbjct: 394 RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGET 453

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            +A   F+K+K +   PN+      L     +  L EA  ++N + + G  PD V +N+M
Sbjct: 454 GKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMM 513

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           ++   K+G+  +A+ L   M   G  P+V                V   LI       R+
Sbjct: 514 MKCYSKVGQVDEAVNLLSEMIRNGCEPDV---------------IVVNSLIDSLYKAGRV 558

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  + +   M++    P  +TYN L+  +  +    +A+ +++ M+     P   ++N +
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTL 618

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + +    E+  K++ +M    C PD  +Y  +I GLI +++   A+ +  + L+K M
Sbjct: 619 LDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ-LKKSM 677

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
               +        L + G+      +A+   +  +F V+
Sbjct: 678 HPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVN 716



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 16/283 (5%)

Query: 296  KKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            +KA  +F+ M          T N LL   G+S K+ +  +L  + +  R  P+  TY ++
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 355  LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
            +    +  NL +A   + +++   F+P    +  +++GL K+G+  +A++LFE M   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG- 923

Query: 415  SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                          CK N A++  LI G+G     +    L K M   G  PD  +Y  L
Sbjct: 924  --------------CKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTIL 969

Query: 475  IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
            +  + +    DEA+  + E+  +G  P    YN I+    ++   E    +++EM  RG 
Sbjct: 970  VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1029

Query: 535  CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             PD  +Y  L+  L       +A +  EE+   G++  V  YN
Sbjct: 1030 VPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYN 1072



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 177/434 (40%), Gaps = 62/434 (14%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++  ++VDVL + R     AF  F     K G   N  TYN+++  L RA + E  + +L
Sbjct: 368 VTFTILVDVLCKARDFDE-AFATF-DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
             M   G+  +  T+ I ++ F  + E  KAV  FE M        +   N  L +L   
Sbjct: 426 GTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEM 485

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              +EA+ +F+ L+     P+  TY +++  + +V  + EA  + +EMI  G +PDV+  
Sbjct: 486 GRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVV 545

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI--------------------MIW 426
           N +++ L K G+  +A ++F+ MK    SP V +Y                      MI 
Sbjct: 546 NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIE 605

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           K C  N   +  L+  F     +++   +  +M    C PD LTYN +I  +  +   + 
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN----------------YEMGRKVWD--- 527
           A   + ++ +S   P   T   ++    + G                 + + R  W+   
Sbjct: 666 AFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLM 724

Query: 528 -----------------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-GM 569
                            E++  G C +D+    L+  L    R   AY+  ++  +K G+
Sbjct: 725 GGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGI 784

Query: 570 KAPVLDYNKFAADL 583
              +  YN    +L
Sbjct: 785 SPTLASYNCLIGEL 798



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 19/287 (6%)

Query: 320  LLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+  L + K    A  +FDK   +   +P L +Y  L+G    V    +A  ++ +M + 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 378  GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
            G  PD    N++L    K GK ++   LFE+ K             MI + CK +A  Y 
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITE---LFELYKE------------MISRRCKPDAITYN 862

Query: 438  CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVR 496
             +I+       +D   D   ++      P   TY  LI  L K+ ++ +EA+R+++EM  
Sbjct: 863  IVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL-EEAMRLFEEMSD 921

Query: 497  SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
             G KP    +N+++  Y + G+ E   +++  M+  G  PD  SYT+L+  L    R  E
Sbjct: 922  YGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDE 981

Query: 557  AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            A  Y  E+   G+    + YN+    L ++ R      L  +MR  G
Sbjct: 982  ALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 26/343 (7%)

Query: 224  ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETF 282
            A+    RF    G KP       +YN ++         E   ++  EM   G    + T+
Sbjct: 773  AQSVFIRFTKELGVKPTL----ESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTY 828

Query: 283  KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLK 341
             + ++A   + +  +   ++E M     K    T N ++ NL +S  L K   L +D + 
Sbjct: 829  NLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVS 888

Query: 342  HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
              F+P   TY  LL G  +   L EA  ++ EM+D G +P+   +NI++ G  K G  + 
Sbjct: 889  GDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNT 948

Query: 402  AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLIT 441
            A +LF+ M  +G  P+++SYT ++   C+                     ++  Y  +I 
Sbjct: 949  ACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMID 1008

Query: 442  GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            G G   R++    L  EM+ RG  PD  TYN+LI  + +  M ++A ++Y+E+   G +P
Sbjct: 1009 GLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEP 1068

Query: 502  TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             + TYN +++ Y  +GN +    V+  M+  GC P+  ++  L
Sbjct: 1069 NVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 171/398 (42%), Gaps = 28/398 (7%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           +R     G KP      +T++++M   G+ R  ET+ S+LEEM   GL  ++ T+ I + 
Sbjct: 217 YRRMVLEGLKPSL----KTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIR 272

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTP 346
               A    +A  I + M        V T   L++ L  +    +A  LF K+K     P
Sbjct: 273 VLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKP 332

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +  TY  +L  +    +L      W+EM   G+ PDV+   I++  L K G   +A  L 
Sbjct: 333 DRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLL 392

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNR 446
           +VM+ +G  PN+ +Y  +I    + N                    A  Y   I  +G  
Sbjct: 393 DVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKS 452

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNA-LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            R D   +  ++M+ RG  P+ +  NA L  L ++ ++  EA  I+  +  +G  P   T
Sbjct: 453 GRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL-REAKVIFNRLKSNGLAPDSVT 511

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YNM+MK Y + G  +   ++  +M    C PD      LI  L    R  EA+K    + 
Sbjct: 512 YNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLK 571

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +  +   V+ YN   A L + G+     EL   M  +G
Sbjct: 572 DMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNG 609



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 130/272 (47%), Gaps = 19/272 (6%)

Query: 320  LLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            +++ L + K    AQ +F +        P L +Y  L+ G+  V N   A  ++ EM + 
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 378  GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
            G  PDV  +N++L+   K GK ++  +L+E M      PN  ++ I+I    K N+    
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSL--- 876

Query: 438  CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVR 496
                     + +D+ YDL+         P   TY  L+  L+K  ++ +EA  +++EMV 
Sbjct: 877  --------DKALDLFYDLV----SGDFSPTPCTYGPLLDGLLKSGRL-EEAKELFEEMVD 923

Query: 497  SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
             G +P    YN+++  + +TG+     +++  M+R G  PD  SYT L+G L    R  +
Sbjct: 924  YGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDD 983

Query: 557  AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            A  Y E++ + G+    + YN     L R+ R
Sbjct: 984  ALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHR 1015



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 150/342 (43%), Gaps = 18/342 (5%)

Query: 263  TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
              +   +E+G K   ++E++   +  F      + A  +F  M        V T N LL+
Sbjct: 776  VFIRFTKELGVKP--TLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLD 833

Query: 323  NLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
              G+S    E   L++++      PN  T+ +++    +  +L +A  ++ +++   F P
Sbjct: 834  AHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSP 893

Query: 382  DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
                +  +L+GLLK G+  +A +LFE M   G               C+ N A+Y  LI 
Sbjct: 894  TPCTYGPLLDGLLKSGRLEEAKELFEEMVDYG---------------CRPNNAIYNILIN 938

Query: 442  GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            GFG    ++   +L K M   G  PD  +Y +L+  +      D+A+  ++++ ++G   
Sbjct: 939  GFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYL 998

Query: 502  TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
                YN+++    ++   E    ++DEM  RG  PD  +Y  LI  L       +A K  
Sbjct: 999  DSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLY 1058

Query: 562  EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EE+   G++  V  YN      S +G S     + ++M   G
Sbjct: 1059 EELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGG 1100



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 150/370 (40%), Gaps = 66/370 (17%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           AF +F    + P   H + T N M+ IL   R+   MV                      
Sbjct: 107 AFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDMV---------------------- 144

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK------ 341
                        +F LM     K  ++T   + + L      ++    F K++      
Sbjct: 145 ------------VVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHL 192

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           + ++ N   + +L  G CR     EA  ++  M+ +G KP +   + ++   +  GKR D
Sbjct: 193 NAYSYNGLIHLLLQSGLCR-----EALEMYRRMVLEGLKPSLKTFSALM---VATGKRRD 244

Query: 402 A--IK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              +K L E M++ G  PN+ +YTI I                  G   R+D    ++K 
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTICIRVL---------------GRAGRIDEACRIMKR 289

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME+ GC PD +TY  LI  +      D+A+ ++ +M  S  KP   TY  ++  +   G+
Sbjct: 290 MEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGD 349

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
               ++ W EM   G  PD  ++T+L+  L       EA+  L+ M ++G+   +  YN 
Sbjct: 350 LGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNT 409

Query: 579 FAADLSRAGR 588
             + L R  R
Sbjct: 410 LISGLLRVNR 419



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 161/399 (40%), Gaps = 24/399 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A++ FC   D    A    TYN++++ LG+  Q +  + +   M   G   +  TF   +
Sbjct: 563 AWKMFCRLKDMK-LAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTIL 621

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
           +      E   A+ +   M        V T N ++  L   K   +A  LF ++K   TP
Sbjct: 622 DCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTP 681

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMI-------DKGFKPDVVAHNIMLEGLLK---I 396
           +  T   LL G  +   + +A ++  + +       D+ F  D++   +   G  K    
Sbjct: 682 DCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILF 741

Query: 397 GKR-------SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-----NAAVYTCLITGFG 444
           G R        D   L  ++K             +  +F K+         Y  LI GF 
Sbjct: 742 GDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFL 801

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                ++ ++L  EM+  GC PD  TYN L+         +E   +Y++M+ S  KP   
Sbjct: 802 GVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTI 861

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T+N+I+ +  ++ + +    ++ +++     P   +Y  L+ GL+   R  EA +  EEM
Sbjct: 862 THNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEM 921

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ++ G +     YN       + G      EL ++M   G
Sbjct: 922 VDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 140/335 (41%), Gaps = 19/335 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+A +  T+  +++ L +A   +    +L+ M ++G+L ++ T+   ++          A
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F  M          T    ++  G+S    +A   F+K+K R   PN+      L  
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYS 483

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +  L EA  ++N +   G  PD V +N+M++   K G+  +AI+L   M      P+
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPD 543

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           +                V   LI       R+D  + +   +++    P  +TYN LI  
Sbjct: 544 I---------------IVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAG 588

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +     A+ ++  M  +G  P   T+N I+    +    ++  K+  +M    C PD
Sbjct: 589 LGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPD 648

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             ++  +I GL+ + R  +A     +M  K M  P
Sbjct: 649 VLTFNTIIHGLVIEKRVSDAIWLFHQM--KKMLTP 681


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 27/348 (7%)

Query: 222  RHARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
            +H R   A++ F     K G +    +YN ++  L      E    + ++M   G  + +
Sbjct: 764  KHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGC-APD 822

Query: 281  TFKIAMNAFAAAKERKKAVAIFEL---MNKYKFKAGVDTINCLLENLGRSK-LPKEAQLL 336
             F   M   A   +  K   +FEL   M   + K    T N ++ +L +S  L K     
Sbjct: 823  AFTFNM-LLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFF 881

Query: 337  FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +D +   F P   TY  L+ G  +V  L EA R++ EM D G KP+    NI++ G  KI
Sbjct: 882  YDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKI 941

Query: 397  GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVY 436
            G    A +LF+ M  +G  P+++SYTI++   C                      +   Y
Sbjct: 942  GDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAY 1001

Query: 437  TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
              +I G G  +RM+    L  EM  RG  PD  TYN+L+  + +  M ++A R+Y+E+  
Sbjct: 1002 NRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQL 1061

Query: 497  SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +G +P + TYN +++ Y  + N E    V+  M+  GC P+  +Y  L
Sbjct: 1062 AGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 171/383 (44%), Gaps = 24/383 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + +TY+++M  LG+ R  E ++ +L+EM + GL  ++ TF I +     A +  +A
Sbjct: 222 GLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEA 281

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             IF  M+       + T   L++ L  +   + A+ LF K+K +   P+   Y  LL  
Sbjct: 282 YEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDK 341

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +    +L      W++M   G+ PDVV   I+++ L K     +A   F+VM+ +G  PN
Sbjct: 342 FNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPN 401

Query: 418 VRSYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I                        +  A  Y   I  FG         +  +
Sbjct: 402 LHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFE 461

Query: 458 EMEERGCPPDGLTYNA-LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M+ +G  P+ +  NA L  L ++ ++  EA  ++  +  +G  P   TYNM+MK Y + 
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRL-REAKTMFNGLRENGLAPDSVTYNMMMKCYSKV 520

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +    +  EMIR GC PD      LI  L    R  EA++  + M +  +   V+ Y
Sbjct: 521 GQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTY 580

Query: 577 NKFAADLSRAGRSYVLDELAQKM 599
           N   + L + GR     EL + M
Sbjct: 581 NTLLSGLGKEGRVQKAIELFESM 603



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/399 (20%), Positives = 173/399 (43%), Gaps = 19/399 (4%)

Query: 213 LVVDVLERFR-HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           + + +L++F        F+ F    +  G+  +  T+  ++ +L +AR F+   +  + M
Sbjct: 334 IYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM 393

Query: 272 GEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
            ++G+L ++ T+   +     A   + A+ + + M     +    T    ++  G+S   
Sbjct: 394 RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGET 453

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            +A   F+K+K +   PN+      L     +  L EA  ++N + + G  PD V +N+M
Sbjct: 454 GKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMM 513

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           ++   K+G+  +A+ L   M   G  P+V                V   LI       R+
Sbjct: 514 MKCYSKVGQVDEAVNLLSEMIRNGCEPDV---------------IVVNSLIDSLYKAGRV 558

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D  + +   M++    P  +TYN L+  +  +    +A+ +++ M+     P   ++N +
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTL 618

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  + +    E+  K++ +M    C PD  +Y  +I GLI +++   A+ +  + L+K M
Sbjct: 619 LDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ-LKKSM 677

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
               +        L + G+      +A+   +  +F V+
Sbjct: 678 HPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVN 716



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 16/283 (5%)

Query: 296  KKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            +KA  +F+ M          T N LL   G+S K+ +  +L  + +  R  P+  TY ++
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 355  LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
            +    +  NL +A   + +++   F+P    +  +++GL K+G+  +A++LFE M   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG- 923

Query: 415  SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                          CK N A++  LI G+G     +    L K M   G  PD  +Y  L
Sbjct: 924  --------------CKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTIL 969

Query: 475  IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
            +  + +    DEA+  + E+  +G  P    YN I+    ++   E    +++EM  RG 
Sbjct: 970  VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1029

Query: 535  CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             PD  +Y  L+  L       +A +  EE+   G++  V  YN
Sbjct: 1030 VPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYN 1072



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 19/287 (6%)

Query: 320  LLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            L+  L + K    A  +FDK   +   +P L +Y  L+G    V    +A  ++ +M + 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 378  GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
            G  PD    N++L    K GK ++   LFE+ K             MI + CK +A  Y 
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITE---LFELYKE------------MISRRCKPDAITYN 862

Query: 438  CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVR 496
             +I+       +D   D   ++      P   TY  LI  L K+ ++ +EA+R+++EM  
Sbjct: 863  IVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL-EEAMRLFEEMSD 921

Query: 497  SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
             G KP    +N+++  Y + G+ E   +++  M+  G  PD  SYT+L+  L    R  E
Sbjct: 922  YGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDE 981

Query: 557  AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            A  Y  E+   G+    + YN+    L ++ R      L  +MR  G
Sbjct: 982  ALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 177/434 (40%), Gaps = 62/434 (14%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++  ++VDVL + R     AF  F     K G   N  TYN+++  L RA + E  + +L
Sbjct: 368 VTFTILVDVLCKARDFDE-AFATF-DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           + M   G+  +  T+   ++ F  + E  KAV  FE M        +   N  L +L   
Sbjct: 426 DTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEM 485

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              +EA+ +F+ L+     P+  TY +++  + +V  + EA  + +EMI  G +PDV+  
Sbjct: 486 GRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVV 545

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI--------------------MIW 426
           N +++ L K G+  +A ++F+ MK    SP V +Y                      MI 
Sbjct: 546 NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIX 605

Query: 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
           K C  N   +  L+  F     +++   +  +M    C PD LTYN +I  +  +   + 
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN----------------YEMGRKVWD--- 527
           A   + ++ +S   P   T   ++    + G                 + + R  W+   
Sbjct: 666 AFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLM 724

Query: 528 -----------------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-GM 569
                            E++  G C +D+    L+  L    R   AY+  ++  +K G+
Sbjct: 725 GGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGI 784

Query: 570 KAPVLDYNKFAADL 583
              +  YN    +L
Sbjct: 785 SPTLASYNCLIGEL 798



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 194/482 (40%), Gaps = 80/482 (16%)

Query: 119 VVASSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADP 178
           V+ +SL+      N   S C  Y  VSS    ++    E  G+   + ++ V++K     
Sbjct: 4   VIVTSLSMFGTCCNGAFSECQVY--VSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKK 61

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECG---INLSHNLVVDVLERFRHARRPAFRFFCWA 235
           R+    C++  +      N E V+   G   I +S + V+ VL+      R A  +F   
Sbjct: 62  RK--DFCRLALQ------NPEQVMVVKGKTEIRVSEDEVLGVLKSMTDPIR-ALSYFYSI 112

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295
            + P   H + T N M+  L    + E M                               
Sbjct: 113 SEFPTVLHTTETCNFMLEFLRVHDKVEDMA------------------------------ 142

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
               A+FE M K   +  +DT   + + L  R  L +   +L    K  F  N  +Y  L
Sbjct: 143 ----AVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGL 198

Query: 355 L-----GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---IKLF 406
           +      G+C      EA  V+  M+ +G KP +  ++ ++  L   GK+ D+   + L 
Sbjct: 199 IHLLIQSGFCG-----EALEVYRRMVSEGLKPSLKTYSALMVAL---GKKRDSEMVMVLL 250

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M+  G  PNV ++TI                I   G   ++D  Y++ + M++ GC P
Sbjct: 251 KEMEDLGLRPNVYTFTI---------------CIRVLGRAGKIDEAYEIFRRMDDEGCGP 295

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TY  LI  +      + A  ++ +M  +G KP    Y  ++  +   G+ +  ++ W
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFW 355

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            +M   G  PD  ++T+L+  L       EA+   + M ++G+   +  YN     L RA
Sbjct: 356 SQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRA 415

Query: 587 GR 588
           GR
Sbjct: 416 GR 417



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 15/217 (6%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N MLE L    K  D   +FE M+ K    ++ +Y + I+K            ++  G  
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTY-LTIFK-----------ALSIRGGL 173

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           R+M  V   L +M + G   +  +YN LI L+       EA+ +Y+ MV  G KP++ TY
Sbjct: 174 RQMTTV---LNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTY 230

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           + +M +  +  + EM   +  EM   G  P+  ++T+ I  L    +  EAY+    M +
Sbjct: 231 SALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDD 290

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +G    ++ Y      L  AG+     EL  KM+ +G
Sbjct: 291 EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG 327


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 180/415 (43%), Gaps = 52/415 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   N+ TYN++++IL   R+ +    +L  MG  G   ++ T+   +  +    + K
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA+ +   M +    A + T N +++    S     A  + D ++     P+  +YT L+
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C++  +  A  ++NEM+D G  P+ V +  +++G  K  K   A  L E MK  G  
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           PNV++Y ++I    KQN                       YT +I G        +  ++
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M E+GC P+ LTY++LI+ +  +   +EA  ++ E+ R G  P   TY  ++++Y  
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL--------------------------- 548
           +G  E        MI+ GC P   +Y VLI GL                           
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             QD        L E L+ G+   V   N   ++LS AGR +  +EL   M   G
Sbjct: 743 TDQDAVSVMSAKLAE-LDPGLSVQV--QNALVSNLSTAGRWFEANELLGSMISQG 794



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 157/354 (44%), Gaps = 18/354 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+R F    +K G   N  TY +++S L  +   +  + +   M   G+  +  T+   +
Sbjct: 339 AWRLFVDMKNK-GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           N     +  K A  +  LM +      + T N +++       PK+A L+ + +  R  +
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 457

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            NL TY  ++ G+C   N   A R+ + M D G KPD  ++  ++ G  KI K   A  L
Sbjct: 458 ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M   G  PN  +YT +I  +CK                 ++D    LL+ M+  GC 
Sbjct: 518 FNEMVDDGLCPNEVTYTALIDGYCKD---------------EKLDTATSLLEHMKRSGCR 562

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+  TYN LI  +  Q     A  + K M+  G  P + TY  ++    + G+  +  ++
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +++MI +GC P+  +Y+ LI  L  + +  EA     E+   G+    + Y K 
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 129/341 (37%), Gaps = 55/341 (16%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +L +  +  L    Q+     K    PN  TY+ L+ G C    + EA  +  EMI  G 
Sbjct: 257 ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGI 316

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
            P        +  L  +G   DA +LF  MK KG  PNV +YT +I   C          
Sbjct: 317 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 376

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI      RR+   + +L  M   GC P+ +TYN +IK   
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD------------ 527
           I   P +A+ +   M++ G    + TYN I+K Y  +GN     ++ D            
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 528 -----------------------EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                                  EM+  G CP++ +YT LI G    ++   A   LE M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
              G +  V  YN     L++       +EL + M   G F
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 168/439 (38%), Gaps = 81/439 (18%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           +Y  ++    +  + E+   +  EM + GL   E T+   ++ +   ++   A ++ E M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 306 NKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   +  V T N L+  L + +      +L    ++    PN+ TYT ++ G C+  + 
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  ++N+MI++G  P+++ ++ ++  L + GK  +A  LF  ++  G  P+  +Y  M
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK----- 479
           I  +          +++G     +++  ++ L  M + GC P   TY  LIK +K     
Sbjct: 677 IEAY----------IMSG-----KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 721

Query: 480 ----IQKMPD-------------------------------------------------- 485
               +  +PD                                                  
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +   M+  G  P    YN ++ S  +  N ++   V+  M  +GC    N Y  LI
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM---RFS 602
             L    R  EA    E ML +      +        L R G   +  E    M   R+ 
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 901

Query: 603 GKFEVSNVLARWAETTKNR 621
             F +  +LAR  E +K R
Sbjct: 902 PSFHIYTILAR--EASKKR 918



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 16/284 (5%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           + ++  +++++   + G+   + LL +L R  +       + + L     PNL  Y  ++
Sbjct: 163 RTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVI 222

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  N+ +A  +  ++ +    PD   +  M+ G  +      A+++F  M  +G  
Sbjct: 223 NALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG-- 280

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        C+ N   Y+ LI G  +  R++  +DL++EM   G  P   T    I
Sbjct: 281 -------------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +      ++A R++ +M   G +P ++TY  ++     +G  ++   ++  M R G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           P+  +Y  LI  L+   R   A+  L  M   G    ++ YN+ 
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 27/266 (10%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L  Y+ LL    R+         ++ M+ +G +P+++ +N ++  L K G  +DA  + +
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            +     SP+  +YT MI   C+++                +D    +  +M + GC P+
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKH---------------DLDSALQVFNQMAKEGCEPN 284

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +TY+ LI  +      +EA  + +EM+  G  PT HT    + +    G YE   +++ 
Sbjct: 285 TVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFV 344

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +M  +GC P+  +YT LI GL        A      M   G+    + YN          
Sbjct: 345 DMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA--------- 395

Query: 588 RSYVLDELAQKMRFSGKFEVSNVLAR 613
              +++ L +  R    F V N++ R
Sbjct: 396 ---LINILVENRRIKYAFVVLNLMGR 418



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 67/171 (39%)

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           LI    ++  M      L  + + G       Y+AL+  +    M    +  Y  M+  G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
            +P +  YN ++ +  + GN      +  ++      PD  +YT +I G   +     A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
           +   +M ++G +   + Y+     L  +GR     +L ++M   G    ++
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 174/372 (46%), Gaps = 26/372 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEE-MGEKGLLSMETFKIAMNAFAAAKERKKA 298
           G + N+ TY+ ++S  GR    E      +  + E    +   +   ++A+  A   ++A
Sbjct: 257 GVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERA 316

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR----FTPNLTTYTVL 354
            AI   M +   +A +   N L++     +   +   +F +LK R     +P + +Y  L
Sbjct: 317 EAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCL 376

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  + ++  + +A ++ NEM D+G K +   ++++++G +++G  ++A  +FE M   G 
Sbjct: 377 INLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGI 436

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P+  +Y I++  FCK                 +M+   +LL  ME   CPP   TY  +
Sbjct: 437 KPDGITYNILMNAFCKNG---------------QMNRALELLARMESGDCPPTLRTYTII 481

Query: 475 IK-LMKIQ--KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           I   MKI   +M  E VR   +M  +GF+P+  TYN+IM    Q G  +    + DEM+ 
Sbjct: 482 IDGFMKIGDLRMAFETVR---DMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVV 538

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
            G  P++ SYT LI G       G A+KY   + E G+K  V+ Y        +AGR   
Sbjct: 539 AGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQS 598

Query: 592 LDELAQKMRFSG 603
              +  +M  +G
Sbjct: 599 TLAITAEMAAAG 610



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 150/339 (44%), Gaps = 17/339 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G +    +Y  ++++  +  + +  + +  EM ++G+  + +T+ + ++ +    +   A
Sbjct: 365 GLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANA 424

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            ++FE M+    K    T N L+    ++ ++ +  +LL         P L TYT+++ G
Sbjct: 425 FSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDG 484

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + ++ +L  A     +M   GF+P    +N+++ GL + G+   A  + + M   G  PN
Sbjct: 485 FMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPN 544

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            RSYT                LI G+     M + +     ++E G  PD + Y +L+K 
Sbjct: 545 ERSYTT---------------LIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKA 589

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                     + I  EM  +G     + YN+++  + Q G+      +  +M   G  PD
Sbjct: 590 CCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPD 649

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            +SYT  I          +A + +E+M ++G++  +  Y
Sbjct: 650 IHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAY 688



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 134/334 (40%), Gaps = 22/334 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G  HN +TY+ ++    +        S+ E+M   G+     T+ I MNAF    +  +A
Sbjct: 400 GIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRA 459

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +   M        + T   +++   +   L    + + D     F P+  TY V++ G
Sbjct: 460 LELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHG 519

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +   +  A  + +EM+  G  P+  ++  ++EG   IG    A K F  +K  G  P+
Sbjct: 520 LAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPD 579

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  ++   CK                     N  +Y  L+ G+  R  M    D+++
Sbjct: 580 VIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQ 639

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  PD  +Y + I          +A    ++M + G +P +  Y  ++  +    
Sbjct: 640 KMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASAS 699

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             E     +DEM   G  PD   Y  ++  L+S+
Sbjct: 700 YPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSR 733



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 125/291 (42%), Gaps = 27/291 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  ++ TYN +M  L +A Q +   S+++EM   G+   E ++   +  +A   +   A
Sbjct: 505 GFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLA 564

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGG 357
              F  + +   K  V     LL+   ++   +    +  ++     P N   Y +LL G
Sbjct: 565 FKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDG 624

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           W +  ++ EA  +  +M  +G  PD+ ++   +    K G    A +  E MK +G  PN
Sbjct: 625 WAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPN 684

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-- 475
           +++YT +I  +    +A Y           +  I YD   EM+  G  PD   Y+ ++  
Sbjct: 685 LQAYTTLIHGWA---SASYP---------EKALICYD---EMKSAGMIPDKPLYHCIMTS 729

Query: 476 ----KLMKIQKMPDEAVRIYKEMVRSG----FKPTIHTYNMIMKSYFQTGN 518
                 +  + + D  +R+  EMV  G    F    H    ++K+  Q+G+
Sbjct: 730 LLSRAAVARETVFDGVLRVTSEMVDQGICVDFATAKHWQRFLIKAERQSGD 780



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 123/293 (41%), Gaps = 23/293 (7%)

Query: 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           PK+A+ + D  K    P    +T+L+  + +  +   A   +  M   G +P+V ++  +
Sbjct: 174 PKDARKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNL 233

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------------------- 430
           +           AI   E M+A+G SPN  +Y+++I  + +                   
Sbjct: 234 IHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENW 293

Query: 431 -QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N  +Y  +I  +     M+    ++  MEE+G       YN L+      +  D+ + 
Sbjct: 294 HHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLN 353

Query: 490 IYKEM---VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           +++ +     +G  PT+ +Y  ++  Y + G  +   ++ +EM  +G   +  +Y+++I 
Sbjct: 354 VFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIID 413

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G +    +  A+   E+M   G+K   + YN       + G+     EL  +M
Sbjct: 414 GYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARM 466


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 173/363 (47%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S + + ++++ ++S+ ++M   G+ + + TF I +N F    +   A+++   M 
Sbjct: 88  FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKML 147

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    TI  L+    R     +A  L DK+ +  + P++  Y  ++   C+ + + 
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVN 207

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A   + E+  KG +P+VV +  ++ GL   G+ +DA +L   M  +  +PNV +Y+ ++
Sbjct: 208 DALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALL 267

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K                     +   Y+ LI G     R+D    +   M  +GC 
Sbjct: 268 DAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCF 327

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++YN LI      K  ++ ++++++M + G      TYN +++ +FQ G+ +  ++ 
Sbjct: 328 PDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEF 387

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M   G  PD  +Y +L+GGL       +A    E+M +  M   ++ Y      + +
Sbjct: 388 FSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCK 447

Query: 586 AGR 588
            G+
Sbjct: 448 TGK 450



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 173/368 (47%), Gaps = 17/368 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G+  +  T  S+++   R  +    VS++++M E G    +  +   +++    +   
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVN 207

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A+  F+ + +   +  V T   L+  L  S +    A+LL D +K + TPN+ TY+ LL
Sbjct: 208 DALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALL 267

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   ++EA  ++ EM+     PD+V ++ ++ GL    +  +A ++F++M +KG  
Sbjct: 268 DAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCF 327

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V SY  +I  FCK                +R++    L ++M +RG   + +TYN LI
Sbjct: 328 PDVVSYNTLINGFCKA---------------KRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           +        D+A   + +M   G  P I TYN+++      G  E    ++++M +    
Sbjct: 373 QGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMD 432

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
            D  +YT +I G+    +  +A+     +  KG+K  ++ Y    + L   G  + ++ L
Sbjct: 433 LDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEAL 492

Query: 596 AQKMRFSG 603
             KM+  G
Sbjct: 493 YTKMKQEG 500


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 179/413 (43%), Gaps = 57/413 (13%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKE 294
           G A N  T+N  +S L   GR  +   + + ++E  E+GL   +  TF + ++ F  A  
Sbjct: 235 GLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGM 294

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR----------- 343
             +A  + ++M    F   V++ N  L  L ++    EAQ L  ++ H            
Sbjct: 295 VDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNI 354

Query: 344 -------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
                                     TP++ TYT LL  +C   N   A R+ +EM  KG
Sbjct: 355 IVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKG 414

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA-AVYT 437
             P++  +N++L+ LLK G+ ++  +L E M  KG S +  S  I+I   C+ +   +  
Sbjct: 415 CAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAM 474

Query: 438 CLITGFGNRRRMDI------VYDLLKEME-ERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            ++ G  N  R+ +         L+ +    + C PD +TY+ L+  +  +   DEA + 
Sbjct: 475 DIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGRFDEAKKK 534

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
             EM+     P    Y+  +  Y   G   +  KV  +M +R C P   SY +LI G   
Sbjct: 535 LVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTRSYNLLIWGFQE 594

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV------LDELAQ 597
           + +S E  K + EM EKG+ + V+ YN      S  GR  V      LDE+ Q
Sbjct: 595 KQKSDEILKLMSEMKEKGISSNVMTYNSLIK--SFCGRGMVNKAMPLLDEMLQ 645



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 171/364 (46%), Gaps = 35/364 (9%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G A N  TYN ++  L +A +   +  +LE M EKG  L   +  I ++      + +
Sbjct: 412 QKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLE 471

Query: 297 KAVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
            A+ I + M N+ +           L  LG S +     L+ D  +     P+  TY+ L
Sbjct: 472 MAMDIVDGMWNEGRLA---------LRRLGNSFV----SLVSDSSISKSCLPDRITYSTL 518

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+     EA +   EMI K   PD V ++  + G    GK S AIK+   M+ +  
Sbjct: 519 MNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSC 578

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           +P+ RSY ++IW               GF  +++ D +  L+ EM+E+G   + +TYN+L
Sbjct: 579 NPSTRSYNLLIW---------------GFQEKQKSDEILKLMSEMKEKGISSNVMTYNSL 623

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           IK    + M ++A+ +  EM+++   P + ++ +++K++ +T ++   ++V+D  +   C
Sbjct: 624 IKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVFDVALST-C 682

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA---DLSRAGRSYV 591
              +  Y ++   L +  R  EA   LE  LE  +      Y +  A   D+S A  ++ 
Sbjct: 683 GQKEVLYCLMCTELSTYARWIEAKNILETALEMRISIQSFPYKRIIAGLCDVSEADHAHS 742

Query: 592 LDEL 595
           L +L
Sbjct: 743 LLKL 746



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 148/329 (44%), Gaps = 31/329 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           T N+++  L  A + +    + + M  +   S     I    +  A     A+A+ + M 
Sbjct: 145 TRNALLEALSAAGRMDLARRVFDAMPARNEFSS---GILARGYCRAGRSADALAVLDAMP 201

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           +          N ++    R     EA+ L D+++ +   PN+ T+   +   C+   ++
Sbjct: 202 EMNLV----VCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVL 257

Query: 366 EAGRVWNEM---IDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           EA R++N+M    ++G  +PD V  ++ML G    G   +A  L ++M+  G    V SY
Sbjct: 258 EAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGGFLRKVESY 317

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
               W             ++G     R+    +LL EM   G  P+  TYN ++  L K 
Sbjct: 318 NR--W-------------LSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKE 362

Query: 481 QKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
            K  D  VR  ++ VRSG   P + TY  ++ +Y   GN     ++ DEM ++GC P+  
Sbjct: 363 GKAFD--VRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLF 420

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +Y VL+  L+   R+ E  + LE M EKG
Sbjct: 421 TYNVLLQSLLKAGRTTEVERLLERMSEKG 449



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 161/373 (43%), Gaps = 35/373 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A  +  YN ++    R  + + + ++ +++   G    + T    + A +AA     A
Sbjct: 103 GAAPPTPVYNRLLLAALREDRLDLVEALYKDLLLAGATPDVFTRNALLEALSAAGRMDLA 162

Query: 299 VAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F+ M  + +F +G+     L     R+    +A  + D +      NL     ++ G
Sbjct: 163 RRVFDAMPARNEFSSGI-----LARGYCRAGRSADALAVLDAMPEM---NLVVCNTVVAG 214

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---- 413
           +CR   + EA R+ + M  +G  P+VV  N  +  L K G+  +A ++F  M+       
Sbjct: 215 FCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGL 274

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY--DLLKEMEERGCPPDGLTY 471
           P P+  ++ +M+  FC         ++        +DI+     L+++E       GL  
Sbjct: 275 PRPDQVTFDVMLSGFCDAGMVDEATVL--------VDIMRCGGFLRKVESYNRWLSGLVK 326

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N  +          EA  +  EM   G +P  +TYN+I+    + G     R+V D  +R
Sbjct: 327 NGRVG---------EAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVED-FVR 376

Query: 532 RGC-CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590
            G   PD  +YT L+    S+  +  A + L+EM +KG    +  YN     L +AGR+ 
Sbjct: 377 SGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTT 436

Query: 591 VLDELAQKMRFSG 603
            ++ L ++M   G
Sbjct: 437 EVERLLERMSEKG 449


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 175/367 (47%), Gaps = 22/367 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME----TFKIAMNAFAAAKERKKAV 299
           ++ +YN++++ L R    +   ++L  M  +   +      ++ + M A  A +   +AV
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 300 AIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            +   M     +A V T   L+  L   +++ K  +L+ +  +    PN+  Y+ LL G+
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+     + G+V+ EM +KG +PDVV +  +++ L K+GK   A  + ++M  +G  PNV
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y ++I   CK+ +               +     +LK+M E+G  PD +TYN LIK +
Sbjct: 256 VTYNVLINCMCKEGS---------------VKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 479 KIQKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
                 DEA+ + +EMVR     KP + T+N +++     G      +V   M   GC  
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +Y +LIGGL+   +  +A + ++EM   G++     Y+       +  +    ++L 
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL 420

Query: 597 QKMRFSG 603
             MR  G
Sbjct: 421 STMRDRG 427



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 27/338 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN +++ + +    +  + +L++M EKG+   + T+   +   +   E  +A
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309

Query: 299 VAIFELMNKYK--FKAGVDTINCLLENL---GRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
           + + E M + K   K  V T N +++ L   GR +   + + + ++       NL TY +
Sbjct: 310 MWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV--NLVTYNL 367

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+GG  RV  + +A  + +EM   G +PD   ++I+++G  K+ +   A  L   M+ +G
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 414 PSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYD 454
             P +  Y  ++   C+Q                   +   Y+ +I G      +    +
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LLK + + G  PD +TY+ +I +       + A  + K+M  SGF P +  ++ +++ Y 
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
             G      ++  EMI +    D    + L   L++ +
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKIISTLSTSLVASN 585



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 174/393 (44%), Gaps = 31/393 (7%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFA 290
            C +G +P    N   Y+S++    ++ ++E +  +  EM EKG+   +  +   +++  
Sbjct: 176 MCESGIEP----NVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
              + KKA  + ++M +   +  V T N L+  + +    KEA  +  K+  +   P++ 
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKG---FKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           TY  L+ G   V  + EA  +  EM+ +G    KP+VV  N +++GL  IG+   A ++ 
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVR 350

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
            +M+  G   N+ +Y ++I    +                     ++  Y+ LI GF   
Sbjct: 351 AMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKM 410

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            ++D   DLL  M +RG  P+   Y  L+  M  Q M + A  ++ EM  + F   +  Y
Sbjct: 411 WQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAY 469

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           + ++    + G+ +  +++   ++  G  PD  +Y+++I           A   L++M  
Sbjct: 470 STMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTA 529

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            G    V  ++      S  G    + EL ++M
Sbjct: 530 SGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 162/382 (42%), Gaps = 35/382 (9%)

Query: 226 RPAFRFFCWAGDKPGFA--HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283
           R A +F  W   +PG    H +   +    IL RAR +E   S+L+ + + G+ S   F 
Sbjct: 26  RLALKFLNWVIQQPGLELRHLTHMLSITTHILVRARLYENAKSILKHLSQMGVGSKSVFG 85

Query: 284 IAMNAFAAAKERKK-----------------AVAIFELMNKYKFKAGVDTINCLLENLGR 326
             MN +   K                     A+  F LM    F   V T N LL  L +
Sbjct: 86  ALMNTYPLCKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVK 145

Query: 327 SKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            +      L F + L  R  P+++T+ +L+   C    L +AG +  +M + G+ P VV 
Sbjct: 146 ERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVT 205

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +N +L    K G+   A++L + M +KG   +  +Y +++   CK N             
Sbjct: 206 YNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNN------------- 252

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             R    Y LLK+M +R   P+ +TYN++I     +     A RI++EM      P   T
Sbjct: 253 --RSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVT 310

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++  +   GN+E    + + M   G  P++ SY+ L+ GL    +   +   LE M 
Sbjct: 311 YNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMR 370

Query: 566 EKGMKAPVLDYNKFAADLSRAG 587
             GM    + Y      L R G
Sbjct: 371 MNGMIVGCIAYTAMIDGLCRNG 392



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 23/369 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+++        FE  +++LE M   G    E ++   +N      + + + +I 
Sbjct: 307 NCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSIL 366

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
           E M       G      +++ L R+ L  E+  L DK LK    P++ T++VL+ G+CRV
Sbjct: 367 ERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRV 426

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             +     +  +M   G  P+ + +  ++    K G   +A K++  M   G   N    
Sbjct: 427 GKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFIC 486

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            +++   CK                     N+  + C+I G+GN       + +  EM +
Sbjct: 487 NVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIK 546

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P   TY  L+K +       EA R+  ++          TYN I+   F++G    
Sbjct: 547 AGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTD 606

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP-VLDYNKFA 580
              ++DEM++R   PD  +Y ++  GLI + +   A  +   +L KG  +P  + Y  F 
Sbjct: 607 AVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFV 666

Query: 581 ADLSRAGRS 589
             L RAG+S
Sbjct: 667 DGLFRAGQS 675



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 161/355 (45%), Gaps = 17/355 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N ++++L    + +    +L++M E G + S+ T+   +N +      K A+ + + M
Sbjct: 170 TFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQM 229

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +A   T N L+++L ++    +  LL  K++ R  +PN  TY  ++ G+ +   +
Sbjct: 230 GSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKI 289

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A R++ EM      P+ V +N +++G    G    A+ + E+M+A GP PN  SY+  
Sbjct: 290 GAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYS-- 347

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                         L+ G     + ++   +L+ M   G     + Y A+I  +    + 
Sbjct: 348 -------------ALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLL 394

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +E+V++  +M++ G  P + T+++++  + + G  +  +++  +M + G  P+   YT L
Sbjct: 395 NESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTL 454

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           I          EA+K    M   G  A     N   + L + G+  V +     M
Sbjct: 455 IYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHM 509



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 15/213 (7%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           ++++   L+ G   DA++ F +M  +G +P+V +  +++ K  K+               
Sbjct: 102 DLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKE--------------- 146

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           R++  V+   KEM  R   PD  T+N LI ++ ++    +A  + K+M  SG+ P++ TY
Sbjct: 147 RKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTY 206

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N ++  Y + G Y+   ++ D+M  +G   D  +Y +L+  L   +RS + Y  L++M +
Sbjct: 207 NTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRK 266

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           + +    + YN       + G+      + Q+M
Sbjct: 267 RMISPNEITYNSIINGFVKEGKIGAATRIFQEM 299



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 16/219 (7%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELM 305
            T++S++S+L R    +    +L EM E+G +      IA+ N          A  + + M
Sbjct: 837  THDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEM 896

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLGGWCRVKNL 364
                  +G    + L+  L +    +EA+L+ D  L+    P + T+T L+  +CR ++L
Sbjct: 897  EALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESL 956

Query: 365  MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +EA ++ + M     K DV+A+N+++ GL   G  + A+KL++ +K +G  PN+ +Y I+
Sbjct: 957  VEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCIL 1016

Query: 425  IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            I        A++T       N   +     LLK+++ERG
Sbjct: 1017 I-------DAIFT-------NDISLAKGEVLLKDLQERG 1041



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 24/368 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAI 301
           +S TY  + + L R  +    +     +  KG +S E   +   ++    A + K A+  
Sbjct: 622 DSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYF 681

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT--PNLTTYTVLLGGWC 359
            E M K    A +   N +L    R     +A  +F  +    T  P+L TY +LL G+ 
Sbjct: 682 CEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYA 741

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           + KNL +   ++N M+  G  PD +  + ++ G  K       +KL + M   G + +  
Sbjct: 742 KKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQC 801

Query: 420 SYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEM 459
           ++ ++I K+C+ +                       +  +I+       +   + LL EM
Sbjct: 802 TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            ERGC PD   Y AL+  M        A ++  EM   G        + +++   + G  
Sbjct: 862 LERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKV 921

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           E  + V D M+R+   P   ++T L+      +   EA K  + M    +K  V+ YN  
Sbjct: 922 EEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVL 981

Query: 580 AADLSRAG 587
            + L   G
Sbjct: 982 ISGLCADG 989



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 165/399 (41%), Gaps = 28/399 (7%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           +F     K G   NS T++ +++  G +       SM +EM + G   S  T+   + A 
Sbjct: 504 YFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKAL 563

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTI--NCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
             A + K+A  + + +  +   + VDT+  N +L    +S +  +A  LFD++  R   P
Sbjct: 564 CRAGKFKEAKRLLDKL--HYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLP 621

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           +  TY ++  G  R   ++ A   +  ++ KG   P+ V +   ++GL + G+   A+  
Sbjct: 622 DSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYF 681

Query: 406 FEVMKAKGPSPNVRSYTI-------------------MIWK--FCKQNAAVYTCLITGFG 444
            E M+  G   ++ +  +                   M+W       + A Y  L+ G+ 
Sbjct: 682 CEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYA 741

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
            ++ +    +L   M   G  PD LT ++LI       M D  +++ K+M+  G      
Sbjct: 742 KKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQC 801

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T+NM++  Y +T        + + M      PD  ++  +I  L       E++  L EM
Sbjct: 802 TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           LE+G       Y      + R G  +   +L  +M   G
Sbjct: 862 LERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALG 900



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 115/291 (39%), Gaps = 52/291 (17%)

Query: 281  TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            TF + +  +    E  KA  +  +MN +     + T + ++  L R    +E+ LL  ++
Sbjct: 802  TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861

Query: 341  KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
              R   P+   Y  L+   CR+ ++  A ++ +EM   G     VA + ++ GL K GK 
Sbjct: 862  LERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKV 921

Query: 400  SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
             +A  + + M  K   P +               A +T L+  F                
Sbjct: 922  EEAKLVLDFMLRKSLIPTI---------------ATFTTLMHMF---------------- 950

Query: 460  EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
                C  + L                EA+++   M     K  +  YN+++      G+ 
Sbjct: 951  ----CRNESLV---------------EALKLKDTMDFCDVKLDVIAYNVLISGLCADGDV 991

Query: 520  EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-GEAYKYLEEMLEKGM 569
                K++ E+ +RG  P+  +Y +LI  + + D S  +    L+++ E+G+
Sbjct: 992  ASALKLYKEIKQRGLWPNMTTYCILIDAIFTNDISLAKGEVLLKDLQERGV 1042


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 176/423 (41%), Gaps = 57/423 (13%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G + ++ TY S++    R +  +   ++   M  KG L  E ++   ++ F  A+   
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL 355
           +A+ +F  M++      V T   ++  L +     EA  +F ++  +   PN+ TYTVL+
Sbjct: 292 EALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI 351

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C   N  +A ++ N M++KG  P VV +N +++G  K G  + A+++  +M++   S
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCS 411

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
           PN R+Y  +I  FC+                     N   Y  LI G      +   Y L
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L  M E G  PD  TY+  I  +  + + +EA  +++ +   G K     Y+ ++  Y +
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531

Query: 516 TGNYEMGRKVWDEMIRRGCCPDD-----------------------------------NS 540
            G    GR + D+M+  GC P+                                    ++
Sbjct: 532 VGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADT 591

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           YT+LI  L+  D   +A+   ++ML  G    V  Y  F       GR    + L  KM 
Sbjct: 592 YTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMN 651

Query: 601 FSG 603
             G
Sbjct: 652 AKG 654



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 164/381 (43%), Gaps = 38/381 (9%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSIL---GRARQFETMVSML---EEMGEKGLLSM 279
           + A  FF W G K GF HN +++ SM++IL   G  R  E M  ++    +  E  L  +
Sbjct: 91  QTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVL 150

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-D 338
           E  + +MN       R+        ++ +KFK  +   N LL  L R  +  E + ++ +
Sbjct: 151 EMLR-SMN-------RR--------VDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLE 194

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
            L    TPN+ T   ++ G+C++ N++EA    ++++  G   D   +  ++ G  +   
Sbjct: 195 MLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKN 254

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
              A  +F  M  KG               C +N   YT LI GF   RR+D    L  +
Sbjct: 255 VDAANAIFLSMPNKG---------------CLRNEVSYTNLIHGFCEARRVDEALKLFSQ 299

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M E  C P   TY  +I  +       EA+ ++KEM     +P +HTY +++ S  +  N
Sbjct: 300 MHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSN 359

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           ++  +K+ + M+ +G  P   +Y  LI G   +  S  A + L  M           YN+
Sbjct: 360 FDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNE 419

Query: 579 FAADLSRAGRSYVLDELAQKM 599
                 R    +    L  KM
Sbjct: 420 LILGFCRGKNIHKAMSLLHKM 440



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 175/403 (43%), Gaps = 39/403 (9%)

Query: 216 DVLERFRHARR--PAFRFF-------CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +++  F  ARR   A + F       CW           RTY  ++  L +  +    ++
Sbjct: 279 NLIHGFCEARRVDEALKLFSQMHEDNCWP--------TVRTYTVIIFALCQLGRKTEALN 330

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           M +EM EK    ++ T+ + + +         A  I   M +      V T N L++   
Sbjct: 331 MFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYC 390

Query: 326 RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           +  L   A  +   ++ +  +PN  TY  L+ G+CR KN+ +A  + ++M+++  +P+VV
Sbjct: 391 KKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVV 450

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
            +NI++ G  K G    A KL  +M   G  P+  +Y++ I   CK+             
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N  +Y+ LI G+    ++     LL +M   GC P+ +TYN+LI     +K  
Sbjct: 511 KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNF 570

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  +   M++   +P   TY +++ +  +   ++    ++D+M+  G  PD   YT  
Sbjct: 571 KEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           I    S  R  +A   + +M  KG+    + Y  F     R G
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFG 673



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 166/410 (40%), Gaps = 88/410 (21%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N+RTYN ++    R +     +S+L +M E+ L  ++ T+ I ++      +   A  + 
Sbjct: 413 NARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLL 472

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-------------------- 342
            LMN+        T +  ++ L +  L +EA+ LF+ LK                     
Sbjct: 473 SLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKV 532

Query: 343 ------RF----------TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
                 RF           PN  TY  L+ G+C+ KN  EA  + + MI +  +P    +
Sbjct: 533 GKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTY 592

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC-------------KQNA 433
            I+++ LLK  +   A  +F+ M + G  P+V  YT  I  +C             K NA
Sbjct: 593 TILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNA 652

Query: 434 -------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                   +YT  I  +G    +D  + +LK M E GC P   TY+ LIK +   K P E
Sbjct: 653 KGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAK-PKE 711

Query: 487 A------------------------------VRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
                                          + ++ +M   G  P  +TY   +    + 
Sbjct: 712 VSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKV 771

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           G  E+  +++D M  +G  P+++ Y  L+G        GEA ++L+ M+E
Sbjct: 772 GCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIE 821



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 178/412 (43%), Gaps = 48/412 (11%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS----MLEEMG 272
           VLE  R   R          D   F    R YN ++ +L R    + M S    ML++M 
Sbjct: 149 VLEMLRSMNRRV--------DAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMV 200

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD----TINCLLENLGRSK 328
              + ++ T    +N +       +A    EL      +AG+     T   L+    R+K
Sbjct: 201 TPNIFTLNTM---VNGYCKLGNVVEA----ELYVSKIVQAGLSLDTFTYTSLILGYCRNK 253

Query: 329 LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
               A  +F  + ++    N  +YT L+ G+C  + + EA +++++M +    P V  + 
Sbjct: 254 NVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYT 313

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN--------------- 432
           +++  L ++G++++A+ +F+ M  K   PNV +YT++I   C+ +               
Sbjct: 314 VIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEK 373

Query: 433 -----AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
                   Y  LI G+  +       ++L  ME   C P+  TYN LI      K   +A
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKA 433

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + +  +M+    +P + TYN+++    + G+     K+   M   G  PD+ +Y+V I  
Sbjct: 434 MSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDT 493

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDEL 595
           L  +    EA    E + EKG+KA  + Y+       + G+     ++LD++
Sbjct: 494 LCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/377 (18%), Positives = 151/377 (40%), Gaps = 54/377 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N   Y++++    +  +      +L++M   G +    T+   ++ +   K  K+A
Sbjct: 514 GIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEA 573

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
             + ++M K   +   DT   L++NL +     +A  +FD++    + P++  YT  +  
Sbjct: 574 RLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHA 633

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C    L +A  +  +M  KG  PD + + + ++   + G    A  + + M   G  P+
Sbjct: 634 YCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPS 693

Query: 418 VRSYTIMI-------------------------------------WKF------------ 428
             +Y+ +I                                     ++F            
Sbjct: 694 YYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHG 753

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C  NA  Y   ITG      +++ + L   M+E+G  P+   YN+L+       +  EA+
Sbjct: 754 CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAI 813

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           R    M+ +   P + +  +++   +  GN E  ++V+   ++     D+  + VLI GL
Sbjct: 814 RWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGL 873

Query: 549 ISQ---DRSGEAYKYLE 562
           + +   D+  + +  +E
Sbjct: 874 LKKGLSDKCSDLFGIME 890



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 109/273 (39%), Gaps = 56/273 (20%)

Query: 256 GRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           GR +  E ++    +M  KG++     + + ++A+        A  I + M++   +   
Sbjct: 638 GRLKDAEVLIC---KMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSY 694

Query: 315 DTINCLLENLGRSKLPKEAQL------------------------------LFDKL-KHR 343
            T +CL+++L  +K PKE                                 LF K+ +H 
Sbjct: 695 YTYSCLIKHLSNAK-PKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHG 753

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             PN  TY   + G C+V  L  A R+++ M +KG  P+   +N +L    ++G   +AI
Sbjct: 754 CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAI 813

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWK-------------FC-------KQNAAVYTCLITGF 443
           +  ++M      P++ S  +++               FC         +  V+  LI G 
Sbjct: 814 RWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGL 873

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
             +   D   DL   ME +GC     TY+ LI+
Sbjct: 874 LKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIE 906


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 204/472 (43%), Gaps = 46/472 (9%)

Query: 153 DSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHN 212
           D     DG N  +EIT  +  S + P      C      F + +N      +C I  S  
Sbjct: 34  DKGNHFDGKNHMNEITKAT-NSGSQPS-----CT-----FCMGKN------DCQIVRSRT 76

Query: 213 LVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE 270
            V+++L +    +     F+     G +P  A    TY ++++ L   + F+ + S++  
Sbjct: 77  KVMNILIKSGKPQEAIVIFQNLIEGGHQPSLA----TYTTLLNALTTQKYFKPIHSIVSL 132

Query: 271 MGEKGLLSMETFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           + EK +     F  A+ NAFA +   + A  + + M +   K    T N L++  G +  
Sbjct: 133 VEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGK 192

Query: 330 PKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           P E+  L D +  +    PNL TY +L+   C+++N+ EA  V  +M   G +PDVV  N
Sbjct: 193 PDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFN 252

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------------- 431
            +     + GK + A  +   M+     PN R+ TI+I  +C++                
Sbjct: 253 TIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDL 312

Query: 432 ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
               N  V   L+ GF +    D V ++LK MEE    PD +TY+ ++         ++ 
Sbjct: 313 GMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKC 372

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             IY  M++SG KP  H Y+++ K Y +    E   ++   M + G  P+   +T +I G
Sbjct: 373 KEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISG 432

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             S  R   A +  ++M E G+   +  +       + A + +  + + Q M
Sbjct: 433 WCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIM 484



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 23/323 (7%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           MN    + + ++A+ IF+ + +   +  + T   LL  L   K  K    +   ++ +  
Sbjct: 79  MNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQM 138

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P+   +  L+  +    N+ +A +V  +M + G KP    +N +++G    GK  +++K
Sbjct: 139 KPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMK 198

Query: 405 LFEVMKAKG-PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           L ++M  +G   PN+++Y ++I   CK                  +   ++++ +M   G
Sbjct: 199 LLDLMSTEGNVKPNLKTYNMLIRALCKM---------------ENISEAWNVVYKMTASG 243

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +T+N +           +A  +  EM R+  KP   T  +I+  Y + G  +   
Sbjct: 244 MQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEAL 303

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLIS-QDRSG--EAYKYLEEMLEKGMKAPVLDYNKFA 580
           +    M   G  P+      L+ G +   DR G  E  K +EE     ++  V+ Y+   
Sbjct: 304 RFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEF---QIRPDVITYSTIM 360

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
              S+AG      E+   M  SG
Sbjct: 361 NAWSQAGFLEKCKEIYNNMLKSG 383



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 15/168 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ TY+ ++  W +   L +   ++N M+  G KPD  A++I+ +G ++  +   A ++
Sbjct: 351 PDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEM 410

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             VM   G  PNV                ++T +I+G+ +  RMD    +  +M E G  
Sbjct: 411 LTVMTKSGVHPNV---------------VIFTTVISGWCSVGRMDNAMRVFDKMGEFGVS 455

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           P+  T+  LI      K P +A  + + M     +P   T  ++ +++
Sbjct: 456 PNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAW 503


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 184/384 (47%), Gaps = 22/384 (5%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRA--RQFETMVS 266
           S  LV+DVL R R     A         K     N  TYN+++ + +GR   +  + ++ 
Sbjct: 218 SLTLVIDVLCR-RGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILK 276

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           ++E+  E+ + S+ T+ I +  ++++ + ++A  IFE M +   +  V   + ++    R
Sbjct: 277 LMEK--EQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRR 334

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
               K A  LFD++  R   PN  TY  L+GG C+   +  A  +  EM  KG   ++V 
Sbjct: 335 LGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVI 394

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
            N  ++G  + GK  +A++L  +M+ KG + +V +Y I+    CK +             
Sbjct: 395 FNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLH------------- 441

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
             R D    +L  M E+G  P+ +T+   I++   +    EA R++++M + G  P I T
Sbjct: 442 --RYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIIT 499

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++ +Y +    +   K+  EMI +G  PD  +Y+ LI G     R  EA K   EM 
Sbjct: 500 YNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMR 559

Query: 566 EKGMKAPVLDYNKFAADLSRAGRS 589
            KG+   V  Y    + LS+ GR+
Sbjct: 560 LKGITRNVATYTSMISGLSKEGRA 583



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 176/378 (46%), Gaps = 20/378 (5%)

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMN 287
           RFF    +   F    ++   ++ +L R  + E    +++EM  KG++  ++ T+   +N
Sbjct: 201 RFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLN 260

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
           A+   K+RK    I +LM K +    V T + L++    S   +EA+ +F++++ +    
Sbjct: 261 AYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEM 320

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++  Y+ ++    R+ N+  A  +++EM  +   P+   +  ++ G+ K G+   A  L 
Sbjct: 321 DVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILL 380

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             M++KG   N+                ++   + G+  R +MD    L   ME++G   
Sbjct: 381 LEMQSKGVDLNL---------------VIFNTTMDGYCRRGKMDEALRLQAIMEKKGINA 425

Query: 467 DGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           D  TYN L   L K+ +  DEA  I   MV  G KP + T+ M ++ Y + GN     ++
Sbjct: 426 DVFTYNILANGLCKLHRY-DEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERL 484

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + +M ++G  P+  +Y  LI     +++  +A+K   EM+ KG+   +  Y+        
Sbjct: 485 FRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECI 544

Query: 586 AGRSYVLDELAQKMRFSG 603
            GR     +L  +MR  G
Sbjct: 545 VGRVDEALKLFNEMRLKG 562



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 17/272 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+ TY +++  + +A Q E    +L EM  KG+ L++  F   M+ +    +  +A+ + 
Sbjct: 356 NAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQ 415

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            +M K    A V T N L   L +     EA+ + + +  +   PN+ T+T+ +  +C+ 
Sbjct: 416 AIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKE 475

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            NL EA R++ +M  KG  P+++ +N +++   K  K   A K+   M  KG  P++ +Y
Sbjct: 476 GNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTY 535

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           + +I   C          I G     R+D    L  EM  +G   +  TY ++I  +  +
Sbjct: 536 SSLIHGEC----------IVG-----RVDEALKLFNEMRLKGITRNVATYTSMISGLSKE 580

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
              DEA ++Y EM++ G  P    +  ++ S+
Sbjct: 581 GRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 151/359 (42%), Gaps = 23/359 (6%)

Query: 259 RQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFE-LMNKYKFKAGVDT 316
           R F+  + + + + EKGL+  E +  + + A     E    V  F  ++   KF+  V +
Sbjct: 159 RLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKFEIRVQS 218

Query: 317 INCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           +  +++ L R    ++A+ L D++  K    PN+ TY  LL  +   K+      +   M
Sbjct: 219 LTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLM 278

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI-WKFCKQNA 433
             +     V  ++I+++     G   +A K+FE M+ K    +V  Y+ MI W       
Sbjct: 279 EKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWS------ 332

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                     GN +R    + L  EM +R   P+  TY ALI  +      + A  +  E
Sbjct: 333 -------RRLGNMKR---AFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLE 382

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M   G    +  +N  M  Y + G  +   ++   M ++G   D  +Y +L  GL    R
Sbjct: 383 MQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHR 442

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
             EA   L  M+EKG+K  V+ +  F     + G     + L + M   G  EV N++ 
Sbjct: 443 YDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKG--EVPNIIT 499



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K G   +  TYN + + L +  +++    +L  M EKG+  ++ TF + +  +      
Sbjct: 419 EKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNL 478

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A  +F  M K      + T N L++   + +  K+A  +  ++ ++   P+L TY+ L
Sbjct: 479 AEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSL 538

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G C V  + EA +++NEM  KG   +V  +  M+ GL K G+  +A KL++ M   G 
Sbjct: 539 IHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGL 598

Query: 415 SPNVRSYTIMIWKFCK 430
            P+ R +T ++  F K
Sbjct: 599 IPDDRVFTSLVGSFHK 614


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 192/415 (46%), Gaps = 46/415 (11%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E+ L     ++S      VL RF  +   AF FF WA  + GFAH+SR+Y  M+ ILGR
Sbjct: 14  LESSLFSLSPSISKTTFFQVL-RFIASPPKAFEFFNWAS-RNGFAHDSRSYFMMLDILGR 71

Query: 258 ------ARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYK 309
                 AR F   +    E    G + +E       + ++  A    +A+ +F LM    
Sbjct: 72  NGNLNIARNFLFSI----ERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSG 127

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLMEA 367
               V T N LL  L +      A  +FD++   +  TP+  T+ +L+ G+C+   + E 
Sbjct: 128 VSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEG 187

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE--VMKAKGPSPNVRSYTIMI 425
            R + EM     +PDVV +N +++GL + GK   A  + +  V K K  SP+V +YT ++
Sbjct: 188 FRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLV 247

Query: 426 WKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLL-KEMEERGC 464
             +C                    K N   Y  LI G    ++ D + ++L   +  RG 
Sbjct: 248 RGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGF 307

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN L+         DEA++++K+M     +P   TY++++++  Q G++E   +
Sbjct: 308 VPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQ 367

Query: 525 VWDEMIRR-------GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           ++D++          GC P   +Y  +   L    ++ +A +   ++++KG + P
Sbjct: 368 LFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDP 422



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 184/411 (44%), Gaps = 63/411 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLL-SMETFKIAMNAFAAAKERKK 297
           G + +  T+NS++ IL +  +     S+ +EM G  G+     TF I +  F       +
Sbjct: 127 GVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDE 186

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVL 354
               F+ M+++  +  V T N L++ L R+   + A  +   +  +    +P++ TYT L
Sbjct: 187 GFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTL 246

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI------------------ 396
           + G+C  + + EA  V+ EM+ +G KP+ + +N +++GL ++                  
Sbjct: 247 VRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRG 306

Query: 397 ------------------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
                             G   +A+K+F+ MK     P+  +Y+++I   C++       
Sbjct: 307 FVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQR------- 359

Query: 439 LITGFGNRRRMDIVYDLLKE----MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                G+  R + ++D L +    + + GC P    YN +   +       +A R+++++
Sbjct: 360 -----GDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQL 414

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           ++ G +    +Y  ++  + + G +E G K+   M+RR   PD  +Y +LI G + +   
Sbjct: 415 MKKGTQDP-PSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEP 473

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAA-----DLSRAGRSYVLDELAQKMR 600
             AYK LE ML+         ++   +     D +R   S+V+  + +K+R
Sbjct: 474 ILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIR 524



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N +L      G  ++AIKLF +MK+ G SP+V ++  ++    K               R
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLK---------------R 145

Query: 447 RRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            R ++ + +  EM    G  PD  T+N LI+      M DE  R +KEM R   +P + T
Sbjct: 146 GRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVT 205

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIR--RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           YN ++    + G   +   V   M++  +   PD  +YT L+ G   +    EA    EE
Sbjct: 206 YNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEE 265

Query: 564 MLEKGMKAPVLDYNKFAADL 583
           M+ +G+K   + YN     L
Sbjct: 266 MVSRGLKPNDITYNTLIKGL 285



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           ++E+R C       N L++      + +EA++++  M  SG  P++ T+N ++    + G
Sbjct: 94  KIEDRFC-------NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRG 146

Query: 518 NYEMGRKVWDEMI-RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
              M   V+DEM    G  PD  ++ +LI G        E +++ +EM     +  V+ Y
Sbjct: 147 RTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTY 206

Query: 577 NKFAADLSRAGRSYVLDELAQKM 599
           N     L RAG+  +   + + M
Sbjct: 207 NTLVDGLCRAGKVRIAHNVVKGM 229



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 152/384 (39%), Gaps = 42/384 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           G   N  TYN+++  L   ++F+ +  +L   +G +G +    T+   MNA   A    +
Sbjct: 270 GLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDE 329

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--------FTPNLT 349
           A+ +F+ M + K +    T + L+ NL +    + A+ LFDKL            TP + 
Sbjct: 330 ALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVA 389

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            Y  +    C+     +A RV+ +++ KG + D  ++  ++ G  K G      KL   M
Sbjct: 390 AYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKLLLFM 448

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM---------DIVYDLLKEME 460
             +   P+  +Y ++I  F ++        I  +    RM          + + +L E+ 
Sbjct: 449 LRRDYVPDFETYVLLINGFLQKGEP-----ILAYKTLERMLKSSYLPKTSVFHSILSELL 503

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY------- 513
           +     +  ++  L+   KI++  + +    + +  SG +  I  + ++   Y       
Sbjct: 504 KNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLR--IKAFQIVELLYDNGYMVD 561

Query: 514 --------FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
                    Q G     +K+    + +G   D N   V+I GL    R  EA+     ++
Sbjct: 562 MEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYYMLV 621

Query: 566 EKGMKAPVLDYNKFAADLSRAGRS 589
           EK     +         L   GRS
Sbjct: 622 EKSNHQQLSCLEGLRTALEAGGRS 645


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 18/352 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   N+  YN+++S L +A       S L+ M +    ++ ++ I ++ +  A+  +KA+
Sbjct: 59  GLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKAL 118

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
           A    M +          + ++++  ++    +A  +F ++  +   P++  + VLL G 
Sbjct: 119 AFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGL 178

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            R + + EA  ++  M  +G KPDVV +N M+ GL K  K  +A+ L E MK +  SP  
Sbjct: 179 WRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTF 238

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +YT +I   CK            F    R+   Y++ ++M E  CP     Y+ LI + 
Sbjct: 239 VTYTTLIDHLCK------------FA---RLQQAYEVFEKMAEGPCPCTEPAYSVLILIN 283

Query: 479 KIQKM--PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            + K   P EA  +++EM   G  PT+ TYN +++    T   +   ++   M+ +   P
Sbjct: 284 GLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAP 343

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +  +Y +LI  L   D+  EA+K L  M +KG    +  +    + L+RAGR
Sbjct: 344 NMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGR 395



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 171/404 (42%), Gaps = 57/404 (14%)

Query: 205 CGINL-SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET 263
           C  N+ S+N+++D   + R+  +     F    ++ G       Y+S++    +      
Sbjct: 94  CAPNVVSYNIIIDGYCKARNIEKALA--FLREMEELGHPPTPHAYSSIVQSFCKTGNVSK 151

Query: 264 MVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
            + +  EM  KG    +  F + ++    A++  +A  +F  MN    K  V T N ++ 
Sbjct: 152 AMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIA 211

Query: 323 NLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT----------------------------- 352
            L + K   EA  L +++K    +P   TYT                             
Sbjct: 212 GLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPC 271

Query: 353 --------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
                   +L+ G C+ +   EA  ++ EM  +G  P VV +N +LEGLL   K  DA++
Sbjct: 272 TEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAME 331

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L   M  + P+PN+ +Y I+I   CK +               +++  + LL  M ++G 
Sbjct: 332 LTYFMLDQVPAPNMFTYEILISSLCKTD---------------QVEEAFKLLSAMRDKGF 376

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P    +  L+  +      D+A  +YKEM R   +  + + N+++    + G+ +  + 
Sbjct: 377 VPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKD 436

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
              +M   G  PD  +Y  L+ GL  Q ++ +A K +EE++  G
Sbjct: 437 FLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 131/280 (46%), Gaps = 17/280 (6%)

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +  L  + L  +A+ + +++K+  F+P++ ++ +L+ G+ +  +        + M++ G 
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
            P+ + +N ++  L K G  ++A    + M  +  +PNV SY I+I  +CK         
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKA-------- 111

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                  R ++     L+EMEE G PP    Y+++++         +A+ ++ EM   G 
Sbjct: 112 -------RNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGC 164

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P I  +N+++   ++       R+++  M  RGC PD  +Y  +I GL    +  EA  
Sbjct: 165 EPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF 224

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            LE M ++ +    + Y      L +  R     E+ +KM
Sbjct: 225 LLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM 264


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 156/323 (48%), Gaps = 17/323 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y++++  + + +       +  EM  KG+  ++ T+   ++ F    + K A+ +F
Sbjct: 196 NVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLF 255

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
             M     K  V T N L++   +    KE + +F  + K    PN+ TY  L+ G+C V
Sbjct: 256 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 315

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K + +A  +   M  +G  PD+ ++NI+++G  KI K  +A+ LF+ M  K   P+V +Y
Sbjct: 316 KEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTY 375

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             +I   CK     Y                  L+ EM +RG PPD +TY++++  +   
Sbjct: 376 NSLIDGLCKLGKISYAL---------------KLVDEMHDRGVPPDIITYSSILDALCKN 420

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              D+A+ +  ++   G +P ++TY +++    + G  E    ++++++ +G     N+Y
Sbjct: 421 HQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTY 480

Query: 542 TVLIGGLISQDRSGEAYKYLEEM 564
           TV+I G  ++    EA   L +M
Sbjct: 481 TVMIHGFCNKGLFDEALALLSKM 503



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 198/393 (50%), Gaps = 23/393 (5%)

Query: 181 IERVCKVIDELFSLD--RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           I  +CKV +   +LD  R ++  L +  + + ++ ++D + + +H    AF  +     K
Sbjct: 169 IHGLCKVGETRAALDLLRRVDGNLVQPNV-VMYSTIIDGMCKDKHVND-AFDLYSEMVSK 226

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
            G + N  TY++++S      Q +  + +  +M  + +   + TF I ++ F    + K+
Sbjct: 227 -GISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKE 285

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
              +F +M K   K  V T   L++     K   +A+ +   +  R   P++ +Y +L+ 
Sbjct: 286 GKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILID 345

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C++K + EA  ++ EM  K   PDVV +N +++GL K+GK S A+KL + M  +G  P
Sbjct: 346 GFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPP 405

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ +Y+ ++   CK +               ++D    LL +++++G  P+  TY  LI 
Sbjct: 406 DIITYSSILDALCKNH---------------QVDKAIALLTKLKDQGIRPNMYTYTILID 450

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +      ++A  I+++++  G+  T++TY +++  +   G ++    +  +M    C P
Sbjct: 451 GLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIP 510

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           D  +Y ++I  L  +D + +A K L EM+ +G+
Sbjct: 511 DAVTYEIIIRSLFDKDENDKAEK-LREMITRGL 542



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 130/264 (49%), Gaps = 22/264 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+  Y+ ++ G C+ K++ +A  +++EM+ KG  P+VV ++ ++ G   +G+  DAI L
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
           F  M  +   P+V ++ I++  FCK                     N   Y  L+ G+  
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 314

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
            + ++    +L  M +RG  PD  +YN LI    KI+K+ DEA+ ++KEM      P + 
Sbjct: 315 VKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKV-DEAMNLFKEMHHKHIIPDVV 373

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN ++    + G      K+ DEM  RG  PD  +Y+ ++  L    +  +A   L ++
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR 588
            ++G++  +  Y      L + GR
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGR 457



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 120/282 (42%), Gaps = 24/282 (8%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           + PN  T+T L+ G C    + +A    + ++  GF+ D V +  ++ GL K+G+   A+
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
            L   +      PNV  Y+ +I   CK                     N   Y+ LI+GF
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPT 502
               ++    DL  +M      PD  T+N L+    K  KM  E   ++  M++ G KP 
Sbjct: 243 FTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM-KEGKTVFAMMMKQGIKPN 301

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + TY  +M  Y         + +   M +RG  PD  SY +LI G     +  EA    +
Sbjct: 302 VVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFK 361

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMRFSG 603
           EM  K +   V+ YN     L + G+ SY L +L  +M   G
Sbjct: 362 EMHHKHIIPDVVTYNSLIDGLCKLGKISYAL-KLVDEMHDRG 402


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 173/406 (42%), Gaps = 70/406 (17%)

Query: 228 AFRFFCWAG-DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286
           A + F +AG   PGF HN  TY+S++  L RAR F+ + S++ ++      S    K   
Sbjct: 65  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRN----SYPPIKCGE 120

Query: 287 NAF-------AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
           N F         A   + ++ IF  +  +  K  V ++N LL  L +++       +F  
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN 180

Query: 340 LKHRF-------------------------------------TPNLTTYTVLLGGWCRVK 362
            K  F                                      PNL TYT +LGG+    
Sbjct: 181 SKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARG 240

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           ++  A RV  EM+D+G+ PD   + ++++G  K+G+ S+A  + + M+     PN  +Y 
Sbjct: 241 DMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYG 300

Query: 423 IMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           +MI   CK+                    ++++   +I       ++D    L ++M + 
Sbjct: 301 VMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 360

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            C PD    + LI  +  +    EA +++ E    G  P++ TYN ++    + G     
Sbjct: 361 NCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEA 419

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
            ++WD+M  R C P+  +Y VLI GL       E  + LEEMLE G
Sbjct: 420 GRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIG 465



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI-AMNAFAAAKERKKAVAIF 302
           N  TY  M+  L + ++     +M +EM E+  +   +     ++A     +  +A  ++
Sbjct: 295 NEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLW 354

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
             M K         ++ L+  L +     EA+ LFD+ +    P+L TY  L+ G C   
Sbjct: 355 RKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTYNTLIAGMCEKG 414

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            L EAGR+W++M ++  KP+   +N+++EGL K G   + +++ E M   G  PN  ++ 
Sbjct: 415 ELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFL 474

Query: 423 IMI 425
           I+ 
Sbjct: 475 ILF 477


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 167/359 (46%), Gaps = 17/359 (4%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            T+N+++  L +A   E   ++L EM ++G +    TF I  + +++  +   A+ ++E  
Sbjct: 659  TFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETA 718

Query: 306  NKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                 K    T + LL  L +  ++ K  ++L  ++     PN   Y  ++ G+ R  +L
Sbjct: 719  VDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDL 778

Query: 365  MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            + A    + M  +G KPD +A+N ++    ++G   +A +    MK KG SP+V +Y I 
Sbjct: 779  VGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNI- 837

Query: 425  IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                          LI G+G +   D  +DLLKEME+ G  P+ ++Y  LI  +      
Sbjct: 838  --------------LIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKL 883

Query: 485  DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             EA  + ++M   G  P +  YNM++      G  E   +  +EM ++G   +  +Y  L
Sbjct: 884  LEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTL 943

Query: 545  IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            I GL    +  EA   L E+  KG+K  V  YN   +    AG       L ++M+ SG
Sbjct: 944  IDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSG 1002



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 129/280 (46%), Gaps = 19/280 (6%)

Query: 336 LFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LF+++KH R +P +  Y VL+ G C+V+ + +A ++++EM+ +   P ++ +N +++G  
Sbjct: 574 LFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYC 633

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           K G    + K+ E MKA    P++                 +  L+ G      ++   +
Sbjct: 634 KDGNPEKSFKVRERMKADNIEPSL---------------ITFNTLLKGLFKAGMVEDAEN 678

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +L EM+++G  PD  T++ L          D A+ +Y+  V SG K   +T ++++ +  
Sbjct: 679 VLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALC 738

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E   ++    + +G  P++  Y  +I G   +     A   ++ M ++GMK   L
Sbjct: 739 KEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHL 798

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG---KFEVSNVL 611
            YN         G     ++   KM+  G     E  N+L
Sbjct: 799 AYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNIL 838



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 148/375 (39%), Gaps = 33/375 (8%)

Query: 229  FRFFCWAGDKP------------GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
             R FC  GD              G + +  TYN ++   GR  +F+    +L+EM + G 
Sbjct: 804  IRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGT 863

Query: 277  L-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQ 334
            + ++ ++   +N      +  +A  +   M        V   N L++    + K+    +
Sbjct: 864  MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFR 923

Query: 335  LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
               +  K     NL TY  L+ G      L EA  +  E+  KG KPDV  +N ++ G  
Sbjct: 924  FSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYR 983

Query: 395  KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
              G     I L+E MK  G  P +++Y ++I   C +     T  I G            
Sbjct: 984  FAGNVQRCIALYEEMKTSGIKPTLKTYHLLI-SLCTKEGIELTKKIFG------------ 1030

Query: 455  LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
                  E    PD L YN ++    +    D+A  + K+M+         TYN ++    
Sbjct: 1031 ------EMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQL 1084

Query: 515  QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
            + G     R + DEM  R   P+ ++Y +++ G         AY +  EM EKG+   V 
Sbjct: 1085 KVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVC 1144

Query: 575  DYNKFAADLSRAGRS 589
              ++  + L    RS
Sbjct: 1145 IGDELVSGLKEEWRS 1159


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 166/364 (45%), Gaps = 25/364 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  NS TY  +M  L R  + +    +L ++    ++    F   +N + +     +A 
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVV---LFNTLINGYVSRGRLDEAK 391

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           A+  E M        + T N L+  L +      A+ L ++++ +   PN+ TYT+L+  
Sbjct: 392 AVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDR 451

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   L EA  V +EM  KG   + V +N ++  L K  K  DA+ +F  M +KG  P+
Sbjct: 452 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 511

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + ++  +I+  CK                     N   Y  LI  F  R  M     L+ 
Sbjct: 512 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 571

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M  RGCP D +TYN LIK +      ++ + ++++M+  G  P   + N+++    +TG
Sbjct: 572 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 631

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +   +MI RG  PD  +Y  LI GL    R+ EA    +++  +G+    + YN
Sbjct: 632 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYN 691

Query: 578 KFAA 581
              +
Sbjct: 692 TLIS 695



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 176/431 (40%), Gaps = 55/431 (12%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAM 286
           +   F WAG + G+ H    Y  ++  LG A +F+T  ++L +M ++G++  E+ F + M
Sbjct: 112 SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIM 171

Query: 287 NAFAAAKERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRF 344
             +  A    +A   + ++   Y  +    + N +L+ L     PK    + ++ L    
Sbjct: 172 KHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGI 231

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS---- 400
           +P + T+ V++   C V  +  A  +  +M   G  P+ + +  ++  L K+G+ +    
Sbjct: 232 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLK 291

Query: 401 -------------------------------DAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
                                          +A KL + M  +G +PN  +Y +++   C
Sbjct: 292 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC 351

Query: 430 KQ----------------NAAVYTCLITGFGNRRRMDIVYDLLKE-MEERGCPPDGLTYN 472
           +                 N  ++  LI G+ +R R+D    ++ E M   GC PD  TYN
Sbjct: 352 RMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 411

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +  +     A  +  EM   G +P + TY +++  + + G  E  R V DEM  +
Sbjct: 412 TLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK 471

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G   +   Y  LI  L   ++  +A     +M  KG K  +  +N     L +  +    
Sbjct: 472 GLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEA 531

Query: 593 DELAQKMRFSG 603
             L Q M   G
Sbjct: 532 LGLYQDMLLEG 542



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 145/314 (46%), Gaps = 17/314 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY  ++    +  + E   ++L+EM  KGL L+   +   ++A    ++ + A
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
           + +F  M+    K  + T N L+  L +    +EA  L+ D L      N  TY  L+  
Sbjct: 497 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 556

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   + EA ++ N+M+ +G   D + +N +++ L + G     + LFE M +KG +PN
Sbjct: 557 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 616

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             S  I+I   C+             GN +      + L++M  RG  PD +TYN+LI  
Sbjct: 617 NISCNILINGLCRT------------GNIQH---ALEFLRDMIHRGLTPDIVTYNSLING 661

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       EA+ ++ ++   G  P   TYN ++  + + G ++    +    +  G  P+
Sbjct: 662 LCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 721

Query: 538 DNSYTVLIGGLISQ 551
           + ++ +L+   I +
Sbjct: 722 EVTWYILVSNFIKE 735


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 179/394 (45%), Gaps = 29/394 (7%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y SMM +L +   F     +L+EM ++ + +S +     +  +  A    +A  +F  M 
Sbjct: 137 YASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRYVRAGMSSEASDLFRSME 196

Query: 307 KYKFKAGVD---TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           +Y    GV     +  LL  L + +L  EAQ LFD  K  FTP++  YT L+  WCR   
Sbjct: 197 EY--GGGVPDPAVLASLLGALSKKRLASEAQALFDSYKSVFTPDVVLYTTLVHAWCRSGC 254

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L +A +V+ EM   G  P+V  +  +++ + + G+   A +L   M   G  PN  ++  
Sbjct: 255 LDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNA 314

Query: 424 MIWKF--------------------CKQNAAVYTCLI-TGFGN-RRRMDIVYDLLKEMEE 461
           ++                       C  +   Y  L+ T  G  +  +D    LL +M  
Sbjct: 315 IMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLKMIA 374

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           +GC PD  T+N ++KL+ +    D A ++Y+ M     KP + TYN++MK + +  + +M
Sbjct: 375 KGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMDM 434

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLDYNKFA 580
             ++  +M  +G  P+ N+Y  LI     +     AY  L EMLE K +K     Y+   
Sbjct: 435 VLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLREMLEVKSLKPKKPVYDMVL 494

Query: 581 ADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
             L +AG+    +EL + M   G  +  +  A W
Sbjct: 495 VLLRKAGQLRKHEELVELMADRGFIKRPSDDALW 528


>gi|125536538|gb|EAY83026.1| hypothetical protein OsI_38244 [Oryza sativa Indica Group]
          Length = 1117

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/508 (23%), Positives = 213/508 (41%), Gaps = 60/508 (11%)

Query: 162 NSESEITSVSYKSTADPREIERVCKVIDELFSLD---RNMEAVLDECGINLSHNLVVDVL 218
           +SE  I  V   +  D   I  V   + E+   +    ++E  L+  G+  +  LV  VL
Sbjct: 156 DSEQSIQEVGDGNAGDVENISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVL 215

Query: 219 ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLL 277
            R    R   F+FF W    PGF + + TYN+M+ I G  R F  M  +++EM  E  L 
Sbjct: 216 NRCFKKRHLGFKFFDWVRQVPGFQNTTETYNAMLYIAGEERNFGAMEKLMDEMDKEMCLK 275

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKE- 332
            ++T+ I ++++  A++  K ++ F+ M K +  A       TI   L N  +S+L  E 
Sbjct: 276 DIKTWTIVISSYGKARQIGKMLSTFQAMGKSRHVAADSKVYRTILRALCNSAKSELALEF 335

Query: 333 ---------------------------AQLLF----DKLKHRFTPNLTTYTVLLGGWCRV 361
                                      A+ +F    D +K    P    Y   L  +C  
Sbjct: 336 YKDMARNTEVGSDIFRLLLCCLAGSDNAEGVFYVRDDMIKSMKYPEEYCYLEALRSFCVS 395

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EA +++ +M++K       A  I+L GL K G+   A+++ E MK+   +      
Sbjct: 396 GKIEEAQKIFQQMMNKSIASS-SAFEILLRGLCKDGRMDKALQVMEYMKSNSSA------ 448

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                     ++A +  LI G+  +       ++L+EM E GC P   +Y  L++ +   
Sbjct: 449 ----------SSATFGSLIDGYLRKGERMKALEVLQEMREYGCVPLASSYTQLMQHLFAF 498

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              + A R+Y+EM  +G +P +     ++  + + G+       +  +   G  P   +Y
Sbjct: 499 DQHEAACRLYEEMQENGIEPDVVAITALIGGHVRNGHISEAWDAFRNINENGQKPTLKAY 558

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           TV I  L    R  EA K L+EMLE   +     +++  + L     ++ L+E +   R 
Sbjct: 559 TVFIQELCKASRPLEALKLLKEMLESDFRPSEQTFSRIISTLY---DNHYLEEASNIERM 615

Query: 602 SGKFEVSNVLARWAETTKNRVYRKDRIE 629
              F   + +      T ++V   D+ E
Sbjct: 616 RASFNCCSPIEELQRRTLDQVDYTDKFE 643



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 183/426 (42%), Gaps = 46/426 (10%)

Query: 149  DDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLD--RNMEAVLDECG 206
            DD QD +   D NN                 ++E++C++   L S D   ++E  L+   
Sbjct: 677  DDTQDLEQAKDYNN----------------EDVEQICRI---LSSSDCWSSIEQALEMTS 717

Query: 207  INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
            I+ + +LV  +++R +   R A +FF W G +  +   ++TYN+ + + G A+ F+ M  
Sbjct: 718  ISFTPDLVEAIMKRCKANSRAALQFFSWVGKRSYYMQTTKTYNTAIKLAGSAKDFKHMRH 777

Query: 267  MLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            +  EM   +   ++ T+ + +  +  A   + A+  F  M +  F+    T + L+  L 
Sbjct: 778  LYREMIWAECCPTVNTWNVMICQYGNAGLTEMALETFYQMKQGGFQPDKTTYSHLIMYLS 837

Query: 326  RSK---LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            R K   +    ++  +  +  + P+       L   C    +  A      +   GF   
Sbjct: 838  RRKGRKVDAAVKIFHEMCRAGYIPDNGMVRTYLSVLCECGMIDRAESSVVLLCKHGFSIQ 897

Query: 383  VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------------ 430
               ++I++  L +  + ++A+ LF+ +K  G S +   Y  +I    +            
Sbjct: 898  A-GYSILIRSLCRSDRMAEALSLFDNIKNYGCSRSAYMYGSLIHVLLRRDRFEDASAKLA 956

Query: 431  --------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    Q+  +YT  +  +  +R +    D+LKEM E GC P  +TY+ALI+      
Sbjct: 957  EMKNLGIAQSTHMYTSFMIYYLGKRDVSKAMDVLKEMTENGCEPTVVTYSALIRGHMAMG 1016

Query: 483  MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
            M  EA  +++ M   G  P   TY+M M    + G  E G ++  +M+  G  P   ++ 
Sbjct: 1017 MVSEAWDVFQRMKLKGPVPDFETYSMFMSCLCKAGRSEDGLQLIHDMLNSGIIPSALNFR 1076

Query: 543  VLIGGL 548
             ++ GL
Sbjct: 1077 TVVHGL 1082


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 178/400 (44%), Gaps = 33/400 (8%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSI-LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
           FF WA  +PGF HN+ T NS++ + +      E      +E+         T+   +  F
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGF 62

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNL 348
             A++  +AV +   M        + T   L+  L       +A Q+    +  +  P+ 
Sbjct: 63  CKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDA 122

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
             YTV++G  C++  L  A   +  M+  G  PD V + +++  L K  K     ++FE 
Sbjct: 123 FLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEE 182

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
           M +KG SP + +Y  ++  +CK                     + ++Y+ LI G     R
Sbjct: 183 MLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDR 242

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            D   +L  EM   G   D + Y + I  L K  K+ DEA  ++ +M+ +G  P   +YN
Sbjct: 243 HDEARELF-EMAA-GDVQDVIVYTSFISGLCKAGKL-DEAKAVHVKMIEAGCAPDPVSYN 299

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +I+ S  +       +++ D+ + R C P     TVL+ GL    R  EA   LE MLE 
Sbjct: 300 VIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLET 359

Query: 568 GMKAP-VLDYNKFAADLSRAGR---SYVLDELAQKMRFSG 603
           G +AP V+ Y+     L +A R   +YV   + QKMR +G
Sbjct: 360 GDRAPSVVTYSAVIDGLCKADRLDDAYV---VLQKMRRAG 396



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 167/367 (45%), Gaps = 20/367 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERK 296
           + G   +  TY  ++  L +A ++E    + EEM  KG    + T+   +N +  A    
Sbjct: 150 QSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRID 209

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A+++   +            + L++ L +     EA+ LF+ +      ++  YT  + 
Sbjct: 210 QALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFE-MAAGDVQDVIVYTSFIS 268

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   L EA  V  +MI+ G  PD V++N+++  L K  + S+A +L +    +   P
Sbjct: 269 GLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMP 328

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALI 475
            V   T+++   CK       C+I               L+ M E G   P  +TY+A+I
Sbjct: 329 GVPVCTVLVDGLCKSRRVEEACVI---------------LERMLETGDRAPSVVTYSAVI 373

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
             L K  ++ D+A  + ++M R+G  P + TY  I+ ++ + G  +  R+++  M  RGC
Sbjct: 374 DGLCKADRL-DDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 432

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
             D  +Y +LI G     +  EA   +EEM  +G++  V+  +     L +  R      
Sbjct: 433 ALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARL 492

Query: 595 LAQKMRF 601
           L +KM F
Sbjct: 493 LMEKMNF 499



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 15/227 (6%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           GF+ +    N +LE  +  G   +A ++F+        P+  +Y  +I  FCK       
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAE----- 66

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                     ++    +LL EM+  G  P  +T+ +LI+ +      D+A++I+ +M+  
Sbjct: 67  ----------QIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDM 116

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
             KP    Y +++    +    ++    ++ M++ GC PD  +YTVL+  L    +  + 
Sbjct: 117 KVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQG 176

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
           ++  EEML KG    ++ Y        +AGR      L ++++ +G+
Sbjct: 177 HQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGR 223


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 22/327 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G +  + +YN+++  L      +    +  EM   G    E T+ + ++A   +   +  
Sbjct: 64  GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDM 123

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           + I E M+   +K+   T N ++  L +SK+  EA  L +  +   F+P   TY  LL G
Sbjct: 124 LKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDG 183

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +  N+ +A  +++EM++ G +P+   +NI+L G    G      +LFE M  +G +P+
Sbjct: 184 LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 243

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           ++SYT++I   C                    + +   Y  LI G G   R++    L  
Sbjct: 244 IKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYN 303

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +ME++G  P+  TYN+LI  +       EA ++Y+E++  G+KP + TYN +++ Y  +G
Sbjct: 304 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 363

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           + E     +  MI  GC P+ ++Y  L
Sbjct: 364 SPENAFAAYGRMIVGGCRPNSSTYMQL 390



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + +L+ +G+S   ++   + +++ ++ +     TY  ++ G  + K L EA  ++ ++
Sbjct: 106 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 165

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           + +GF P    +  +L+GLLK G   DA  LF+ M   G               C+ N A
Sbjct: 166 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG---------------CEPNCA 210

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           +Y  L+ G+      + V +L + M E+G  PD  +Y  +I  +      ++ +  +K++
Sbjct: 211 IYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQL 270

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G +P + TYN+++    ++G  E    ++++M ++G  P+  +Y  LI  L    ++
Sbjct: 271 TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA 330

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            EA K  EE+L KG K  V  YN      S +G
Sbjct: 331 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 363



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 15/230 (6%)

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+ K  + A  +  +  + G      ++N ++ GL+       A +LF  MK  G     
Sbjct: 45  CKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLG----- 99

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                     C  +   Y  ++   G   R++ +  + +EM  +G     +TYN +I  +
Sbjct: 100 ----------CDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGL 149

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              KM DEA+ +Y +++  GF PT  TY  ++    + GN E    ++DEM+  GC P+ 
Sbjct: 150 VKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNC 209

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             Y +L+ G      + +  +  E M+E+GM   +  Y      L   GR
Sbjct: 210 AIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGR 259


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 170/373 (45%), Gaps = 24/373 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TY+S++  L +AR  +   + L +M  KG+L    T+   +  +++  + K+A
Sbjct: 251 GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 310

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           V +F+ M +      V  +N L+ +L +    KEA+ +FD +  +   P++ +YT++L G
Sbjct: 311 VRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNG 370

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     L++   +++ M+  G  PD+   N++++     G    A+ +F  M+  G  P+
Sbjct: 371 YATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPH 430

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I   C+                     +   Y CLI GF     +    +L+ 
Sbjct: 431 VVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELIS 490

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           E+   G   D + + ++I  L K+ ++ D A  I+   V  G  P    YNM+M  Y   
Sbjct: 491 EIMNNGMRLDIVFFGSIINNLCKLGRVMD-AQNIFDLTVNVGLHPDAVVYNMLMDGYCLV 549

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E   +V+D M+  G  P+   Y  L+ G     R  E      EML+KG+K   + Y
Sbjct: 550 GKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 609

Query: 577 NKFAADLSRAGRS 589
           N     L  AGR+
Sbjct: 610 NIIIDGLFEAGRT 622



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 180/389 (46%), Gaps = 21/389 (5%)

Query: 206 GINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL---GRARQ 260
           G+ +   +   +L+ F  A+R   A         + G   +  +YN ++  L   G++ Q
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
            + ++ M+ E G      +  +   ++ F    +  KA  +F+ M +      + T + +
Sbjct: 203 ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 262

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +  L +++   +A+    ++ ++   P+  TY  L+ G+       EA RV+ EM  +  
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 322

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
            PDVVA N ++  L K GK  +A  +F+ M  KG +P+V SYTIM+  +     A   CL
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGY-----ATKGCL 377

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +           + DL   M   G  PD  T+N LIK      M D+A+ I+ EM   G 
Sbjct: 378 VD----------MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP + TY  ++ +  + G  +   + +++MI +G  PD  +Y  LI G  +     +A +
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKE 487

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + E++  GM+  ++ +     +L + GR
Sbjct: 488 LISEIMNNGMRLDIVFFGSIINNLCKLGR 516



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 165/378 (43%), Gaps = 24/378 (6%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N++M  L +  + +    + + M  KG    + ++ I +N +A          +F+LM  
Sbjct: 330 NTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLG 389

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLME 366
                 + T N L++      +  +A ++F++++ H   P++ TY  ++   CR+  + +
Sbjct: 390 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A   +N+MID+G  PD  A++ +++G    G    A +L   +   G   ++  +  +I 
Sbjct: 450 AMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509

Query: 427 KFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK                     +A VY  L+ G+    +M+    +   M   G  P
Sbjct: 510 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEP 569

Query: 467 DGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           + + Y  L+    KI ++ DE + +++EM++ G KP+   YN+I+   F+ G     +  
Sbjct: 570 NVVGYGTLVNGYCKIGRI-DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 628

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + EM   G   +  +Y++++ GL       EA    +E+    +K  ++  N   A + +
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 586 AGRSYVLDELAQKMRFSG 603
             R     +L   +  SG
Sbjct: 689 TRRVEEAKDLFASISRSG 706



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 19/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TY ++++ L R  + +  +    +M ++G++  +  +   +  F       KA
Sbjct: 426 GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA 485

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLG 356
             +  E+MN    +  +     ++ NL +     +AQ +FD  +     P+   Y +L+ 
Sbjct: 486 KELISEIMNN-GMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 544

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C V  + +A RV++ M+  G +P+VV +  ++ G  KIG+  + + LF  M  KG  P
Sbjct: 545 GYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +   Y I               +I G     R         EM E G   +  TY+ +++
Sbjct: 605 STILYNI---------------IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLR 649

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +   +  DEA+ ++KE+     K  I T N ++   FQT   E  + ++  + R G  P
Sbjct: 650 GLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
              +Y+++I  L+ +    EA      M   G
Sbjct: 710 CAVTYSIMITNLLKEGLVEEAEDMFSSMQNAG 741



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 128/303 (42%), Gaps = 17/303 (5%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++ E+   G+ L +  F   +N          A  IF+L             N L++   
Sbjct: 488 LISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC 547

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                ++A  +FD +      PN+  Y  L+ G+C++  + E   ++ EM+ KG KP  +
Sbjct: 548 LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 607

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +NI+++GL + G+   A   F  M   G + N  +Y+I               ++ G  
Sbjct: 608 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSI---------------VLRGLF 652

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             R  D    L KE+       D +T N +I  M   +  +EA  ++  + RSG  P   
Sbjct: 653 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY++++ +  + G  E    ++  M   GC PD      ++  L+ ++    A  YL ++
Sbjct: 713 TYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 772

Query: 565 LEK 567
            E+
Sbjct: 773 DER 775



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 28/299 (9%)

Query: 330 PKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           P  A  LF++   R       +P   TY +L+    R      A   + +++  G + D 
Sbjct: 89  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 148

Query: 384 VAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  + +L+G  +  +  +A+  L       G  P+V SY I++   C Q           
Sbjct: 149 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQ----------- 197

Query: 443 FGNRRRMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   + D   DLL+ M E G  C PD + YN +I     +   ++A  ++KEMV+ G  
Sbjct: 198 -GKSGQAD---DLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP 253

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY+ ++ +  +    +       +M+ +G  PD+ +Y  LI G  S  +  EA + 
Sbjct: 254 PDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRV 313

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRFSGKFEVSNVLARWA 615
            +EM  + +   V+  N     L + G+      V D +A K +    F  + +L  +A
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 160/370 (43%), Gaps = 28/370 (7%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
           A N  TYN M+S L R+   E      EEM + GL     T+   MN        K+A A
Sbjct: 275 AMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKA 334

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT----PNLTTYTVLLG 356
           + + M+    K  +     L++   +     EA   FD LK   +    PN   Y  L+ 
Sbjct: 335 LLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEA---FDILKEMISAGVQPNKIMYDNLIR 391

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C++  L  A ++  EMI  G +PD   +N +++G  +   +  A +L   M+  G  P
Sbjct: 392 GLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILP 451

Query: 417 NVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLL 456
           NV SY IMI   C                    K NA +Y  LI G      + +  + L
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEAL 511

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           ++M +    PD   YN+LIK +      +EA   Y ++ + G  P   TY+ ++  Y +T
Sbjct: 512 EKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKT 571

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           GN E   ++  +M+  G  P+ ++YT L+ G    +   +    L+ ML  G K     Y
Sbjct: 572 GNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIY 631

Query: 577 NKFAADLSRA 586
                +LSR+
Sbjct: 632 GIVIRNLSRS 641



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 156/351 (44%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G A   R  N ++  L RA   E +  +   M   G+L  + T+   + A   A++   A
Sbjct: 203 GLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAA 262

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +FE M +        T N ++  L RS   +EA    +++  +  +P+  TY  L+ G
Sbjct: 263 KKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNG 322

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   L EA  + +EM   G KP++V +  +++G +K GK ++A  + + M + G  PN
Sbjct: 323 LCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPN 382

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              Y  +I   CK         I   G   +      LLKEM + G  PD  TYN L++ 
Sbjct: 383 KIMYDNLIRGLCK---------IGQLGRASK------LLKEMIKVGLRPDTFTYNPLMQG 427

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              Q   D A  +  EM  SG  P +++Y +++    Q G  +    + +EMI  G  P+
Sbjct: 428 HFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPN 487

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              Y  LI G   +     A + LE+M +  +   +  YN     LS  GR
Sbjct: 488 AFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGR 538



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 163/352 (46%), Gaps = 21/352 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   N  +Y  M++ L +  + +   ++LEEM  +GL     F  A      +KE   ++
Sbjct: 448 GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGL-KPNAFMYAPLIIGHSKEGNISL 506

Query: 300 AI--FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A    E M K      +   N L++ L      +EA+  + +++ R   P+  TY+ L+ 
Sbjct: 507 ACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH 566

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+  NL +A ++  +M++ G KP+   +  +LEG  K         + + M   G  P
Sbjct: 567 GYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKP 626

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +   Y I+I    +                  M++ + +L E+E+ G  PD   Y++LI 
Sbjct: 627 DNHIYGIVIRNLSRS---------------ENMEVAFMVLTEVEKNGLVPDLHIYSSLIS 671

Query: 477 -LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L KI  M ++AV +  EM + G +P I  YN ++  + ++G+    R V+D ++ +G  
Sbjct: 672 GLCKIADM-EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLV 730

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           P+  +YT LI G        +A+   +EML++G+      YN  A   S A 
Sbjct: 731 PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAA 782



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 199/447 (44%), Gaps = 70/447 (15%)

Query: 204 ECGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFE 262
           +C +N +++N+++  L R   A   AF F     D  G + ++ TY ++M+ L +  + +
Sbjct: 273 DCAMNEVTYNVMISGLCR-SGAVEEAFGFKEEMVDY-GLSPDAFTYGALMNGLCKGSRLK 330

Query: 263 TMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
              ++L+EM   GL  ++  +   ++ F   KE K A A F+++ K    AGV     + 
Sbjct: 331 EAKALLDEMSCSGLKPNIVVYGTLVDGFM--KEGKTAEA-FDIL-KEMISAGVQPNKIMY 386

Query: 322 ENLGRS-----KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +NL R      +L + ++LL + +K    P+  TY  L+ G  +  +   A  + NEM +
Sbjct: 387 DNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRN 446

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
            G  P+V ++ IM+ GL + G+  +A  L E M ++G  PN   Y  +I    K+     
Sbjct: 447 SGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISL 506

Query: 437 TC--------------------LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI- 475
            C                    LI G     RM+   +   ++++RG  PD  TY+ LI 
Sbjct: 507 ACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH 566

Query: 476 ---KLMKIQKMPDEAVR--------------------------------IYKEMVRSGFK 500
              K   ++K  D+ +R                                I + M+ SG K
Sbjct: 567 GYCKTGNLEKA-DQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDK 625

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P  H Y +++++  ++ N E+   V  E+ + G  PD + Y+ LI GL       +A   
Sbjct: 626 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGL 685

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAG 587
           L+EM ++G++  ++ YN       R+G
Sbjct: 686 LDEMAKEGLEPGIVCYNALIDGFCRSG 712



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 152/334 (45%), Gaps = 22/334 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   +  TY+ ++    +    E    +L +M   GL  + +T+   +  +  + + +
Sbjct: 551 KRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYE 610

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
           K  +I + M     K        ++ NL RS+  + A ++  ++ K+   P+L  Y+ L+
Sbjct: 611 KVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 670

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C++ ++ +A  + +EM  +G +P +V +N +++G  + G  S A  +F+ + AKG  
Sbjct: 671 SGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLV 730

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI--VYDLLKEMEERGCPPDGLTYNA 473
           PN  +YT +I   CK                   DI   +DL KEM +RG  PD   YN 
Sbjct: 731 PNCVTYTALIDGNCKNG-----------------DITDAFDLYKEMLDRGIAPDAFVYNV 773

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           L          ++A+ + +EM   G+   +  +N ++  + + G  +   K+   M+ R 
Sbjct: 774 LATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQETEKLLHVMMDRE 832

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
             P+  +   ++       + GEA++   E+ +K
Sbjct: 833 IVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQK 866



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 115/283 (40%), Gaps = 28/283 (9%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P+     VL+  + +  ++  A +V   M D G  P     N +L+ LL    R+DA++
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLL----RADAME 225

Query: 405 LF----EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLI 440
           L       M+  G  P+V +Y+  I   CK                     N   Y  +I
Sbjct: 226 LLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMI 285

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +G      ++  +   +EM + G  PD  TY AL+  +       EA  +  EM  SG K
Sbjct: 286 SGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLK 345

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P I  Y  ++  + + G       +  EMI  G  P+   Y  LI GL    + G A K 
Sbjct: 346 PNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKL 405

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+EM++ G++     YN       +        EL  +MR SG
Sbjct: 406 LKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSG 448


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 173/380 (45%), Gaps = 59/380 (15%)

Query: 240 GFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           G A N  TYN ++ ++ GR  + E + S+L +M   G   ++ T+   + AF  A E   
Sbjct: 145 GVAPNVYTYNILIRALCGRGHRKEAL-SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDG 203

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A  +  +M     K  + T N ++  + ++   ++A+ +FD++ +    P+  +Y  L+G
Sbjct: 204 AERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVG 263

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+     EA  V+ EM  KG  PDVV    ++  + K G    A+ L   M+ +G   
Sbjct: 264 GYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQM 323

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           N  ++T +I  FCK+                    +   Y  LI G+    RMD   +LL
Sbjct: 324 NEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELL 383

Query: 457 KEME-----------------------------------ERGCPPDGLTYNALIKLMKIQ 481
            EME                                   E+G  PD +TY++LI+++  +
Sbjct: 384 HEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEE 443

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           K   +A  ++K M++ G +P   TY  ++  + + GN E    + D+M++ G  PD  +Y
Sbjct: 444 KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTY 503

Query: 542 TVLIGGLISQDRSGEAYKYL 561
           +VLI GL    R+ EA + L
Sbjct: 504 SVLINGLSKSARAMEAQQLL 523



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 33/367 (8%)

Query: 240 GFAHNSRTYNSMMSILGRA------RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK 293
           G+  +   YN+++  L  A      R F++M+S      +    ++ T+ I + A     
Sbjct: 111 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLS------DGVAPNVYTYNILIRALCGRG 164

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYT 352
            RK+A++I   M        V T N L+    R+ ++    +L+   L     PNL T+ 
Sbjct: 165 HRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFN 224

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            ++ G C+   + +A +V++EM+ +G  PD V++N ++ G  K G   +A+ +F  M  K
Sbjct: 225 SMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 284

Query: 413 GPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIV 452
           G  P+V ++T +I   CK                     N   +T LI GF  +  +D  
Sbjct: 285 GIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 344

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
              ++ M +    P  + YNALI    +    DEA  +  EM   G KP + TY+ I+ +
Sbjct: 345 LLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y +  +     ++  +M+ +G  PD  +Y+ LI  L  + R  +A+   + M++ G++  
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464

Query: 573 VLDYNKF 579
              Y   
Sbjct: 465 EFTYTSL 471



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 16/226 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+ P V+A+N +L  L      + A + F+ M + G +PNV +Y I+I   C        
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALC-------- 161

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
               G G+R+       +L++M   GC P+ +TYN L+         D A R+   M+  
Sbjct: 162 ----GRGHRKE---ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDG 214

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G KP + T+N ++    + G  E  RKV+DEM+R G  PD  SY  L+GG      S EA
Sbjct: 215 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEA 274

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                EM +KG+   V+ +      + +AG       L ++MR  G
Sbjct: 275 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERG 320



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 21/280 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           + P++  Y  +L       +L  A R ++ M+  G  P+V  +NI++  L   G R +A+
Sbjct: 112 YVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEAL 170

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAVYTCLITGF 443
            +   M+  G  PNV +Y  ++  F                     K N   +  ++ G 
Sbjct: 171 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGM 230

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
               +M+    +  EM   G  PDG++YN L+          EA+ ++ EM + G  P +
Sbjct: 231 CKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 290

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            T+  ++    + GN E    +  +M  RG   ++ ++T LI G   +    +A   +  
Sbjct: 291 VTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRG 350

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M +  +K  V+ YN         GR     EL  +M   G
Sbjct: 351 MRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 390



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 155/366 (42%), Gaps = 37/366 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G A +  +YN+++    +A      +S+  EM +KG++  + TF   ++    A   + A
Sbjct: 250 GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWA 309

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           V +   M +   +    T   L++   +     +A L    ++  R  P++  Y  L+ G
Sbjct: 310 VTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALING 369

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C V  + EA  + +EM  KG KPDVV ++ ++    K      A +L + M  KG  P+
Sbjct: 370 YCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPD 429

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y+ +I   C++                    +   YT LI G      ++    L  
Sbjct: 430 AITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHD 489

Query: 458 EMEERGCPPDGLTYNALI-------KLMKIQKM--------PDEAVRIYKEMVRSGFKPT 502
           +M + G  PD +TY+ LI       + M+ Q++        P  A   Y  ++    K  
Sbjct: 490 KMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAE 549

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           + +   ++K +   G      KV+  M+ R    D + Y+VLI G        +A  + +
Sbjct: 550 LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHK 609

Query: 563 EMLEKG 568
           +ML++G
Sbjct: 610 QMLQRG 615



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 158/363 (43%), Gaps = 37/363 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  T+ S++ ++ +A   E  V+++ +M E+GL   E TF   ++ F        A
Sbjct: 285 GIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 344

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +     M + + K  V   N L+          EA+ L  +++ +   P++ TY+ ++  
Sbjct: 345 LLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  +   A  +  +M++KG  PD + ++ ++  L +  + SDA  LF+ M   G  P+
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG-NRRRMDIVYDLL 456
             +YT +I   CK+                    +   Y+ LI G   + R M+    L 
Sbjct: 465 EFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLF 524

Query: 457 KEMEERGCPP----DGLTYN----------ALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           K   E   P     D L +           AL+K   ++ + +EA ++Y+ M+   +   
Sbjct: 525 KLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLD 584

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
              Y++++  + + GN         +M++RG  P+  S   LI GL       EA + ++
Sbjct: 585 GSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQ 644

Query: 563 EML 565
           ++L
Sbjct: 645 QLL 647



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN++++      + +    +L EM  KGL   + T+   ++A+    +   A   FEL N
Sbjct: 363 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSA---FEL-N 418

Query: 307 KYKFKAGV----DTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRV 361
           +   + GV     T + L+  L   K   +A +LF + +K    P+  TYT L+ G C+ 
Sbjct: 419 QQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKE 478

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N+  A  + ++M+  G  PDVV +++++ GL K  +  +A +L   +  + P P    Y
Sbjct: 479 GNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKY 538

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             ++    K        L+ GF  +  M+    + + M +R    DG  Y+ LI      
Sbjct: 539 DALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRA 598

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
               +A+  +K+M++ GF P   +   +++  F+ G      +V  +++   CC
Sbjct: 599 GNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLN--CC 650


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 168/373 (45%), Gaps = 23/373 (6%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME----TFKIAMN 287
            C   +  G AHN  T + M++   R R+     S    MG+   L  E    TF   +N
Sbjct: 110 LCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFS---AMGKIIKLGYEPNTITFSTLIN 166

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTP 346
                    +A+ + + M +   K  + TIN L+  L  S    EA LL DK+ ++   P
Sbjct: 167 GLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQP 226

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N  TY  +L   C+      A  +  +M ++  K D V ++I+++GL K G   +A  LF
Sbjct: 227 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             M+ KG + N+ +Y I+I  FC               N  R D    LL++M +R   P
Sbjct: 287 NEMEMKGITTNIITYNILIGGFC---------------NAGRWDDGAKLLRDMIKRKINP 331

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +T++ LI     +    EA  ++KEM+  G  P   TY  ++  + +  + +   ++ 
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D M+ +GC P+  ++ +LI G    +R  +  +   +M  +G+ A  + YN         
Sbjct: 392 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451

Query: 587 GRSYVLDELAQKM 599
           G+  V  EL Q+M
Sbjct: 452 GKLNVAKELFQEM 464



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 163/362 (45%), Gaps = 26/362 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TY  +++++ ++ Q    + +L +M E+ + L    + I ++          A
Sbjct: 223 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 282

Query: 299 VAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             +F  M        + T N L+    N GR      A+LL D +K +  PN+ T++VL+
Sbjct: 283 FNLFNEMEMKGITTNIITYNILIGGFCNAGR--WDDGAKLLRDMIKRKINPNVVTFSVLI 340

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   L EA  +  EMI +G  PD + +  +++G  K      A ++ ++M +KG  
Sbjct: 341 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 400

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           PN+R++ I+I  +CK N                       Y  LI GF    ++++  +L
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 460

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            +EM  R  PP+ +TY  L+  +      ++A+ I++++ +S  +  I  YN+I+     
Sbjct: 461 FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               +    ++  +  +G  P   +Y ++IGGL  +    EA     +M E G       
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWT 580

Query: 576 YN 577
           YN
Sbjct: 581 YN 582



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A ++ TY S++    +    +    M++ M  KG   ++ TF I +N +  A      
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + +F  M+     A   T N L++    LG+  + KE  L  + +  +  PN+ TY +LL
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE--LFQEMVSRKVPPNIVTYKILL 480

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      +A  ++ ++     + D+  +NI++ G+    K  DA  LF  +  KG  
Sbjct: 481 DGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 540

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P V++Y IMI   CK+       L               L ++MEE G  PDG TYN LI
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAEL---------------LFRKMEEDGHAPDGWTYNILI 585

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +         ++V++ +E+ R GF     T  M++
Sbjct: 586 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVI 620



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 118/257 (45%), Gaps = 15/257 (5%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL T ++++  +CR + L  A     ++I  G++P+ +  + ++ GL   G+ S+A++L 
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G  P++ +   ++   C         L               L+ +M E GC P
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAML---------------LIDKMVEYGCQP 226

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TY  ++ +M        A+ + ++M     K     Y++I+    + G+ +    ++
Sbjct: 227 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +EM  +G   +  +Y +LIGG  +  R  +  K L +M+++ +   V+ ++       + 
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346

Query: 587 GRSYVLDELAQKMRFSG 603
           G+    +EL ++M   G
Sbjct: 347 GKLREAEELHKEMIHRG 363



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ +MI     P V+  + +   + K  +    + L + M+ KG + N+ + +IMI
Sbjct: 71  DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
             FC+       C        R++ + +  + ++ + G  P+ +T++ LI  + ++    
Sbjct: 131 NCFCR-------C--------RKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVS 175

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ +   MV  G KP + T N ++     +G       + D+M+  GC P+  +Y  ++
Sbjct: 176 EALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVL 235

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +    ++  A + L +M E+ +K   + Y+     L + G
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 277


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 171/374 (45%), Gaps = 31/374 (8%)

Query: 244 NSRTYNSMMSILGR-----ARQFETM-VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           ++ +YN++++ L R      RQ  ++ V M  E       +  ++   M    A++   +
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           AVA+   M     +A V T   L+  L   S+L    +LL +       PN+  Y+ LL 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+CR     + G+V+ +M  +G KPDV+    +++ L K GK   A K+ ++M  +G  P
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEP 261

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           NV +Y ++I   CK+                    +   Y  LI G      MD     L
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFL 321

Query: 457 KEM--EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +EM   +    PD +T+N++I  L KI +M  +AV++ + M   G    + TYN ++  +
Sbjct: 322 EEMIQGDTVVEPDVVTFNSVIHGLCKIGRMT-QAVKVREMMAERGCMCNLVTYNYLIGGF 380

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +    +M   + DE+   G  PD  +Y++LI G         A K+L  M ++G+KA +
Sbjct: 381 LRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAEL 440

Query: 574 LDYNKFAADLSRAG 587
             Y    A + + G
Sbjct: 441 FHYIPLLAAMCQQG 454



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 112/245 (45%), Gaps = 17/245 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  +YT ++ G C  +   EA  +   M   G + DVV +  ++ GL    +   A++L
Sbjct: 121 PNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALEL 180

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            + M   G  PNV                VY+CL+ G+    R   V  + ++M  RG  
Sbjct: 181 LDEMCGSGVQPNV---------------VVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIK 225

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + +  LI  +  +    +A ++   MV+ G +P + TYN+++ S  + G+      +
Sbjct: 226 PDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTL 285

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG--MKAPVLDYNKFAADL 583
             EM  +G  PD  +Y  LI GL       EA  +LEEM++    ++  V+ +N     L
Sbjct: 286 RKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGL 345

Query: 584 SRAGR 588
            + GR
Sbjct: 346 CKIGR 350



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 166/376 (44%), Gaps = 24/376 (6%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFA 290
            C +G +P    N   Y+ ++    R+ +++ +  + E+M  +G+   +  F   ++   
Sbjct: 184 MCGSGVQP----NVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
              +  KA  + ++M +   +  V T N L+ +L +    +EA  L  ++  +   P++ 
Sbjct: 240 KEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVV 299

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMI--DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           TY  L+ G   V  + EA     EMI  D   +PDVV  N ++ GL KIG+ + A+K+ E
Sbjct: 300 TYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVRE 359

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
           +M  +G               C  N   Y  LI GF    ++ +  +L+ E+   G  PD
Sbjct: 360 MMAERG---------------CMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPD 404

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
             TY+ LI         D A +    M + G K  +  Y  ++ +  Q G  E    +++
Sbjct: 405 SFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFN 464

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           EM  + C  D  +Y+ +I G           + +++ML++G+    + Y+      ++ G
Sbjct: 465 EM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLG 523

Query: 588 RSYVLDELAQKMRFSG 603
                + + ++M  SG
Sbjct: 524 DLEEAERVLKQMTASG 539



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 23/313 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN +++ L +       +++ +EM +KG+   + T+   +   +   E  +A
Sbjct: 258 GLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEA 317

Query: 299 VAIFELM--NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           ++  E M       +  V T N ++  L +     +A  + + +  R    NL TY  L+
Sbjct: 318 MSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLI 377

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           GG+ RV  +  A  + +E+   G +PD   ++I++ G  K+ +   A K    M+ +G  
Sbjct: 378 GGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIK 437

Query: 416 PNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
             +  Y  ++   C+Q                   +A  Y+ +I G      M  V  L+
Sbjct: 438 AELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLI 497

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           ++M + G  PD +TY+ LI +       +EA R+ K+M  SGF P +  ++ ++K Y   
Sbjct: 498 QDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAE 557

Query: 517 GNYEMGRKVWDEM 529
           G  +   K+  EM
Sbjct: 558 GQTDKVLKLIHEM 570



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 17/259 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY  L+ G C    L  A  + +EM   G +P+VV ++ +L G  + G+  D  K+F
Sbjct: 157 DVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVF 216

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           E M  +G  P+V  +T +I   CK+            G   +   V D+   M +RG  P
Sbjct: 217 EDMSRRGIKPDVIMFTGLIDDLCKE------------GKTGKAAKVKDM---MVQRGLEP 261

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TYN LI  +  +    EA+ + KEM   G  P + TYN ++         +      
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFL 321

Query: 527 DEMIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +EMI+      PD  ++  +I GL    R  +A K  E M E+G    ++ YN       
Sbjct: 322 EEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFL 381

Query: 585 RAGRSYVLDELAQKMRFSG 603
           R  +  +   L  ++  SG
Sbjct: 382 RVHKVKMAMNLMDELAISG 400



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query: 416 PNVR---SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           P+VR   SY  ++   C++          G   R+   ++ D+ +E       P+ ++Y 
Sbjct: 78  PDVRDAVSYNTVLAALCRRG---------GDHLRQARSLLVDMSREAHP-AARPNAVSYT 127

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            +++ +   +   EAV + + M  SG +  + TY  +++        +   ++ DEM   
Sbjct: 128 TVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGS 187

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           G  P+   Y+ L+ G     R  +  K  E+M  +G+K  V+ +     DL + G++
Sbjct: 188 GVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKT 244


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 205/448 (45%), Gaps = 29/448 (6%)

Query: 149 DDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSL--DRNMEAVLDECG 206
           D+ QD  G+   N  + ++T ++ K   D R+  RV  + D +  L  +  +  VLD+  
Sbjct: 124 DETQDFLGKTSKNRVK-KMTKLALKRAKDWRQ--RVQFLTDRILGLKSEEFVADVLDDRK 180

Query: 207 INLSHNLVVDVLERF-RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           + ++      V++   + + + A   + W   +  ++ N+R   +++S+LG+A Q    V
Sbjct: 181 VQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAV 240

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE--- 322
            +          +++ +   M  +A      K   + +LM     +  + + N L+    
Sbjct: 241 EIFARAEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARL 300

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             G        +LL +  +    P++ TY  L+    R  NL EA +V+N+M+    +PD
Sbjct: 301 KSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD 360

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           +  +N M+    + G   +A +LF+ +++KG  P+  +Y  +++ F ++           
Sbjct: 361 LWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICE 420

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    +   Y  +I  +G R + D+ + L  +M+  G  PD +TY  LI  +    
Sbjct: 421 DMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKAN 480

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M  EA  +  EM+ +  KPT+ T++ ++  Y + G      + +D M+R G  PD  +Y+
Sbjct: 481 MIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYS 540

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           V++  L+  + SG+A K  +EM+    K
Sbjct: 541 VMLDILLRFNESGKAMKLYQEMVLHSFK 568



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 160/353 (45%), Gaps = 30/353 (8%)

Query: 253  SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
            S++G  RQ  TMV              + +   ++A+AA+   ++A AIF  M +     
Sbjct: 800  SLVGSLRQKCTMVDR------------KVWNALIHAYAASGCYERARAIFNTMMRDGPSP 847

Query: 313  GVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             VD++N L++ L       E  ++  +L+   F  + ++ T++L  +    N+ E  +++
Sbjct: 848  TVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIY 907

Query: 372  NEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
              M   G+ P +  + IM+ GLL  GKR  D   +   M+     P++      IW    
Sbjct: 908  QGMKAAGYFPTMHLYRIMI-GLLAKGKRVRDVEAMVSEMEVAXFKPDLS-----IWNSVL 961

Query: 431  QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            +       L TG G+ ++   VY L+   +E G  PD  TYN LI +    + P+E + +
Sbjct: 962  K-------LYTGIGDFKKTGQVYQLI---QEAGLKPDEDTYNTLILMYCRDRRPEEGLSL 1011

Query: 491  YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
              EM R G +P + TY  ++ ++ +    E   ++++ ++ + C  D + Y +++    +
Sbjct: 1012 MHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRN 1071

Query: 551  QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                 +A K L  M E G++  +   +      S +G+    +++   ++  G
Sbjct: 1072 SGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEG 1124



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 146/351 (41%), Gaps = 26/351 (7%)

Query: 247  TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
            + N +M  L   GR  +   ++  L++MG K  +S  +  + ++AFA A    +   I++
Sbjct: 851  SVNGLMQALIVDGRLDELYVVIQELQDMGFK--ISKSSITLMLDAFAHAGNIFEVKKIYQ 908

Query: 304  LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVK 362
             M    +   +     ++  L + K  ++ + +  +++   F P+L+ +  +L  +  + 
Sbjct: 909  GMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIG 968

Query: 363  NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            +  + G+V+  + + G KPD   +N ++    +  +  + + L   M+  G  P + +Y 
Sbjct: 969  DFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYK 1028

Query: 423  IMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
             +I  F                    CK + + Y  ++  F N         LL  M+E 
Sbjct: 1029 SLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEA 1088

Query: 463  GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            G  P   T + L+        P+EA ++   +   G   +   Y+ ++ +Y + G++ + 
Sbjct: 1089 GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA 1148

Query: 523  RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
             +   EM + G  PD   +T  +        + EA   L+ + + G   P+
Sbjct: 1149 IQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPI 1199



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 14/265 (5%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+H ++PN      +L    +      A  ++    +      V  +N M+    + G+ 
Sbjct: 212 LRHWYSPNARMLATILSVLGKANQEALAVEIFARA-EAAXGNTVQVYNAMMGVYARTGRF 270

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +   +L ++M+++G  P++ S+  +I    K    V              ++  +LL E+
Sbjct: 271 TKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMV-------------TNLAIELLNEV 317

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  PD +TYN LI     +   +EAV++Y +MV    +P + TYN ++  Y + G  
Sbjct: 318 RRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMS 377

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               +++ ++  +G  PD  +Y  L+     +    +  +  E+M++ G     + YN  
Sbjct: 378 REAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTI 437

Query: 580 AADLSRAGRSYVLDELAQKMRFSGK 604
                + G+  +  +L   M+ SG+
Sbjct: 438 IHMYGKRGQHDLAFQLYSDMKLSGR 462



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 170/406 (41%), Gaps = 33/406 (8%)

Query: 208 NLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           +L++++++D+L RF  + +    ++       KP  A     Y  M+ +LG+  + E + 
Sbjct: 536 HLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHA----LYEVMLRVLGKENREEDVH 591

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            ++++M E  L  M + ++  +     +    A  +  L      +   + +  +L + G
Sbjct: 592 KVVKDMEE--LCGMNS-QVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYG 648

Query: 326 RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            S    EA+ L D L+ H    +      L+   C+   L +A R + +  D G      
Sbjct: 649 SSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGL---FC 705

Query: 385 AHNIMLEGLLKIGKR----SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
               M E LL   +     ++A ++F  M+  G  P+   Y  M+  +CK          
Sbjct: 706 GSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKM--------- 756

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLT-YNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
            GF      +  + L+ + EE+G   D ++ +  +I+     K+  +A  +   + +   
Sbjct: 757 -GFP-----ETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCT 810

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
                 +N ++ +Y  +G YE  R +++ M+R G  P  +S   L+  LI   R  E Y 
Sbjct: 811 MVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYV 870

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            ++E+ + G K             + AG  + + ++ Q M+ +G F
Sbjct: 871 VIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYF 916


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 164/352 (46%), Gaps = 17/352 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K G A N  TY  ++       + E    + EEM EKG+   +  +   ++    +   
Sbjct: 287 EKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNV 346

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           K+A+ +F+ M          T   L+  + ++   + AQ+L ++++ +    N   +  L
Sbjct: 347 KRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTL 406

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C    + EA R+   M  KG + DV A+N +  GL K+ ++ +A  L   M  +G 
Sbjct: 407 IDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGV 466

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SPN  S+T +I  +CK+           F   +R      + +EMEE+G  P+ +TYN L
Sbjct: 467 SPNTMSFTTLIDIYCKEG---------NFVEAKR------VFREMEEKGNVPNIITYNVL 511

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I     +    EA ++  E+   G  P ++T   ++      G  +M  K++DEM +RG 
Sbjct: 512 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 571

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            P+  +YT +I GL    RS EA+K  +EM E G+      Y+     L  A
Sbjct: 572 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 623



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 174/366 (47%), Gaps = 17/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN+ +    +      +  +L  M ++G+  ++ T+ + ++ F+   + ++A
Sbjct: 255 GVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 314

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +FE M +   +A V     ++    RS   K A +LFD++  +   P+  TY  L+ G
Sbjct: 315 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 374

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  + NEM  KG   + V  N +++G  + G   +A++L  VM+ KG   +
Sbjct: 375 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 434

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +Y  +    CK N               R D    LL  M ERG  P+ +++  LI +
Sbjct: 435 VFAYNSIASGLCKLN---------------RKDEAKGLLFSMVERGVSPNTMSFTTLIDI 479

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA R+++EM   G  P I TYN+++  Y + GN +   K+ DE+  RG  PD
Sbjct: 480 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             + T LI G     +   A K  +EM ++G+   V+ Y    + LS+ GRS    +L  
Sbjct: 540 VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYD 599

Query: 598 KMRFSG 603
           +M+ +G
Sbjct: 600 EMKETG 605



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 136/310 (43%), Gaps = 20/310 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKL 340
           F +    +A  K   +A+  FE M K  F   +D  +CL+  L  R     ++ L F + 
Sbjct: 158 FDLLFRVYADNKMFGEALEAFEHMEKKGFH--IDERSCLVYLLALRRGGQVDSCLRFFRR 215

Query: 341 KHRFTPNLTTY--TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
                  +T Y  T++L G C+  ++    ++ +E+  KG K +VV +N  +EG  K   
Sbjct: 216 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 275

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
                ++  +M+ +G + NV +YT+               LI GF N  +++    L +E
Sbjct: 276 LGGVAEILTLMEKEGVACNVVTYTL---------------LIHGFSNIGKIEEAQRLFEE 320

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M E+G   D   Y ++I           A+ ++ EM   G  P+ HTY  ++    + G 
Sbjct: 321 MREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQ 380

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E  + + +EM  +G   +   +  LI G        EA +    M +KG+++ V  YN 
Sbjct: 381 MEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNS 440

Query: 579 FAADLSRAGR 588
            A+ L +  R
Sbjct: 441 IASGLCKLNR 450



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 4/150 (2%)

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQK--MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            + ME++G   D    + L+ L+ +++    D  +R ++ MV    + T+++  +++   
Sbjct: 178 FEHMEKKGFHID--ERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGL 235

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G+ EMGRK+ DE+  +G   +  +Y   I G   +   G   + L  M ++G+   V
Sbjct: 236 CKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNV 295

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + Y       S  G+      L ++MR  G
Sbjct: 296 VTYTLLIHGFSNIGKIEEAQRLFEEMREKG 325


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 166/364 (45%), Gaps = 25/364 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  NS TY  +M  L R  + +    +L ++    ++    F   +N + +     +A 
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVV---LFNTLINGYVSRGRLDEAK 373

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           A+  E M        + T N L+  L +      A+ L ++++ +   PN+ TYT+L+  
Sbjct: 374 AVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDR 433

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   L EA  V +EM  KG   + V +N ++  L K  K  DA+ +F  M +KG  P+
Sbjct: 434 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 493

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + ++  +I+  CK                     N   Y  LI  F  R  M     L+ 
Sbjct: 494 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 553

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M  RGCP D +TYN LIK +      ++ + ++++M+  G  P   + N+++    +TG
Sbjct: 554 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 613

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +   +MI RG  PD  +Y  LI GL    R+ EA    +++  +G+    + YN
Sbjct: 614 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYN 673

Query: 578 KFAA 581
              +
Sbjct: 674 TLIS 677



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 177/431 (41%), Gaps = 55/431 (12%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAM 286
           +   F WAG + G+ H    Y  ++  LG A +F+T+ ++L +M ++G++  E+ F + M
Sbjct: 94  SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIM 153

Query: 287 NAFAAAKERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRF 344
             +  A    +A   + ++   Y  +    + N +L+ L     PK    + ++ L    
Sbjct: 154 KHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGI 213

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS---- 400
           +P + T+ V++   C V  +  A  +  +M   G  P+ + +  ++  L K+G+ +    
Sbjct: 214 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLK 273

Query: 401 -------------------------------DAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
                                          +A KL + M  +G +PN  +Y +++   C
Sbjct: 274 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC 333

Query: 430 KQ----------------NAAVYTCLITGFGNRRRMDIVYDLLKE-MEERGCPPDGLTYN 472
           +                 N  ++  LI G+ +R R+D    ++ E M   GC PD  TYN
Sbjct: 334 RMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 393

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +  +     A  +  EM   G +P + TY +++  + + G  E  R V DEM  +
Sbjct: 394 TLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK 453

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G   +   Y  LI  L   ++  +A     +M  KG K  +  +N     L +  +    
Sbjct: 454 GLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEA 513

Query: 593 DELAQKMRFSG 603
             L Q M   G
Sbjct: 514 LGLYQDMLLEG 524



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 145/314 (46%), Gaps = 17/314 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY  ++    +  + E   ++L+EM  KGL L+   +   ++A    ++ + A
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGG 357
           + +F  M+    K  + T N L+  L +    +EA  L+ D L      N  TY  L+  
Sbjct: 479 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 538

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   + EA ++ N+M+ +G   D + +N +++ L + G     + LFE M +KG +PN
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 598

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             S  I+I   C+             GN +      + L++M  RG  PD +TYN+LI  
Sbjct: 599 NISCNILINGLCRT------------GNIQH---ALEFLRDMIHRGLTPDIVTYNSLING 643

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +       EA+ ++ ++   G  P   TYN ++  + + G ++    +    +  G  P+
Sbjct: 644 LCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 703

Query: 538 DNSYTVLIGGLISQ 551
           + ++ +L+   I +
Sbjct: 704 EVTWYILVSNFIKE 717


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 174/405 (42%), Gaps = 56/405 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   ++  +N ++  L   + ++  VS+ +EM + G+    T+ I ++     ++ ++A+
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREAL 406

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL--- 355
            ++E MN+   K  + T + LL     +    EA  L+ ++  + FTPN+ TYT L+   
Sbjct: 407 NLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGH 466

Query: 356 --------------------------------GGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
                                            G C V  + E G +      +GF P  
Sbjct: 467 INKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTA 526

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
           + +N ++ G +K G    A  +++ M AKG  PN+ +YT  I  +CK             
Sbjct: 527 MTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLND 586

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   + A Y  LI GF     M     +L  M + G  P+   YN+ I   K  KM
Sbjct: 587 VRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKM 646

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA+R+Y++M++ G      TY  ++  + + GN     K++ EM+ +G  PD  ++T 
Sbjct: 647 MEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTA 706

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L  GL       +A K L+EM    ++  VL YN       R G+
Sbjct: 707 LTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGK 751



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  N  TY ++M        F+   ++L EM + G+   + T+   +N         + 
Sbjct: 451 GFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVG---RV 507

Query: 299 VAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             + E++ +++ +  V T    N ++    ++ +   A  ++ ++  +   PN+ TYT  
Sbjct: 508 CEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSF 567

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+      A ++ N++  KG +PD+ A+N ++ G  + G  S A+++  +M   G 
Sbjct: 568 IDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGL 627

Query: 415 SPNV--------------------RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
            PN+                    R Y  MI +    + A YT LI GF     +     
Sbjct: 628 LPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALK 687

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  EM  +G  PD +T+ AL   +      D+A ++  EM R   +P +  YNM++  Y 
Sbjct: 688 LYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYL 747

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           + G  +   ++ DEM+ R   PDD +Y +L+G
Sbjct: 748 RNGKLQEAFRLHDEMLERKIMPDDTTYDILVG 779



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 53/350 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF     T+NS++ +L +  + E  + + +E+   G  +S+      M+ +   +E +KA
Sbjct: 242 GFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKA 301

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + IFE                                  + L+    P   TYTVL+ G 
Sbjct: 302 LDIFE----------------------------------ETLRDGLVPTDVTYTVLIRG- 326

Query: 359 CRVKNLME-AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C  + + E A  +  +M D G  P     N++++GLL      DA+ LF+ M   G  P+
Sbjct: 327 CTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG-IPD 385

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y I+I   C+               RR++    +L ++M E G  P  +TY++L+  
Sbjct: 386 AFTYNILIHWLCQ---------------RRKIREALNLWEKMNETGVKPYIVTYHSLLLC 430

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
             +    DEAV++Y EM   GF P + TY  +MK +     ++    +  EM + G   +
Sbjct: 431 YCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCN 490

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           D +Y  LI GL    R  E  + L+    +G     + YN       +AG
Sbjct: 491 DYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 142/321 (44%), Gaps = 17/321 (5%)

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343
           +A+ +    ++  +A+ +   M    F     T N +++ L +    +EA  + D+L   
Sbjct: 217 VAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLAT 276

Query: 344 FTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
               ++   T L+ G+C  + + +A  ++ E +  G  P  V + +++ G  + G    A
Sbjct: 277 GKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKA 336

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +L   M+  G  P+   + +               +I G  N +       L KEM + 
Sbjct: 337 YELCRQMRDHGLLPSTNEFNM---------------VIKGLLNDKLWKDAVSLFKEMADS 381

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G P D  TYN LI  +  ++   EA+ ++++M  +G KP I TY+ ++  Y   G  +  
Sbjct: 382 GIP-DAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEA 440

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            K++ EM  +G  P+  +YT L+ G I++    +AY  L EM + G+      YN     
Sbjct: 441 VKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLING 500

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L   GR   + E+ ++    G
Sbjct: 501 LCVVGRVCEVGEMLKRFETEG 521



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 22/260 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF   + TYNS+++   +A    +  ++ ++M  KG+  ++ T+   ++ +        A
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLA 580

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +   +     +  +   N L+    +   +    Q+L   LK    PN++ Y   + G
Sbjct: 581 LKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITG 640

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +  +K + EA R++ +MI +G   D   +  +++G  K G  + A+KL+  M AKG  P+
Sbjct: 641 YKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD 700

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++T +    C+                     N  +Y  LI G+    ++   + L  
Sbjct: 701 HITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 458 EMEERGCPPDGLTYNALIKL 477
           EM ER   PD  TY+ L+ +
Sbjct: 761 EMLERKIMPDDTTYDILVGM 780



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 50/236 (21%)

Query: 377 KGFKPDVVAH-----------------------------------NIMLEGLLKIGKRSD 401
           +G  PD  +                                    ++++    K G   D
Sbjct: 136 RGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGMYDD 195

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A++LF+ M A    P+ R  ++ I   CK   A          NR  +     +L++M++
Sbjct: 196 AVRLFDEMPASEIEPDQRVCSVAIASLCKLRDA----------NRALL-----VLRKMQD 240

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P   T+N+++ ++      +EA+ I  E++ +G K ++     +M  Y        
Sbjct: 241 AGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRK 300

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
              +++E +R G  P D +YTVLI G   +    +AY+   +M + G+     ++N
Sbjct: 301 ALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFN 356



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   N   YNS ++     +  E  + + E+M ++G+ L   T+   ++ F+      
Sbjct: 624 KDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVT 683

Query: 297 KAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            A+ ++ E++ K      + T   L   L R+    +A+ L D++ +    PN+  Y +L
Sbjct: 684 FALKLYSEMVAKGNIPDHI-TFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNML 742

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           + G+ R   L EA R+ +EM+++   PD   ++I++ G+  +G  S
Sbjct: 743 INGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV-GMKSLGSDS 787



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 1/154 (0%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME RG  PD  +   L+ +        +A+ +  EM   G       ++++M++ F+ G 
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGM 192

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           Y+   +++DEM      PD    +V I  L     +  A   L +M + G       +N 
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
               L + GR      +  ++  +GK ++S VLA
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGK-KMSVVLA 285


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 170/408 (41%), Gaps = 60/408 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   NS  Y +++  L +  Q    + +LEEM   G +  ++TF   ++      +  
Sbjct: 246 KHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH 305

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A  + + M    F     T   LL  L R     EA+ +  K+     PN      L+ 
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP---CPNNAILNTLIN 362

Query: 357 GWCRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G+     L EA    NE MI+ GF+PD+  +NI++ GL K G  S A  L   M  +G  
Sbjct: 363 GYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y I++   CK                     N+ +Y CLI     + ++ +  +L
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 456 LKEMEERGCPPD-----------------------------------GLTYNALIKLMKI 480
           L EM  +GC PD                                    +TYN LI  +  
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLR 542

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           +    +A+ +  +M+  G      TYN ++K++ + GN E G +++++MI  G   D  S
Sbjct: 543 RGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTIS 602

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             ++I GL    +   A+++L + + +G    ++ YN     L + GR
Sbjct: 603 CNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 175/404 (43%), Gaps = 50/404 (12%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAK 293
            G + G+ H    Y   ++ LG   +F+ +  +L +M E+G++  E+ F I M  +  A 
Sbjct: 102 VGGQKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAG 161

Query: 294 ERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTY 351
           +  +A+  + ++   Y  +    + + +LE L     P+ A  + +D L    +P + T+
Sbjct: 162 QPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTF 221

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            +++   C    +  A  +  +M   G  P+ + +  ++  L +  + S+A+KL E M  
Sbjct: 222 GIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFV 281

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G  P+V+++  +I   CK N               ++     L+  M  RG  PD +TY
Sbjct: 282 MGCMPDVQTFNDVIHGLCKVN---------------KIHDATKLVDRMLLRGFYPDNMTY 326

Query: 472 NALIK-LMKIQKM------------PDEAVR-------------------IYKEMVRSGF 499
             L+  L +I K+            P+ A+                    + + M+  GF
Sbjct: 327 GFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGF 386

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P I TYN++M    + G+    R + +EM RRGC P+  +Y +L+ GL       EA  
Sbjct: 387 QPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGL 446

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EM  +G+    + YN     L R  + +V   L  +M   G
Sbjct: 447 VLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG 490



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 160/381 (41%), Gaps = 27/381 (7%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           ++Y+ ++ IL      +   ++  +M  KG+  ++ TF I M A     E   A ++   
Sbjct: 184 KSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRD 243

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M K+           L+  L +     EA +LL +       P++ T+  ++ G C+V  
Sbjct: 244 MTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNK 303

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN------ 417
           + +A ++ + M+ +GF PD + +  +L GL +IGK ++A K+      K P PN      
Sbjct: 304 IHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL----IKIPCPNNAILNT 359

Query: 418 -VRSYTI--------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +  Y +              MI    + +   Y  L+ G      +    DL+ EM  R
Sbjct: 360 LINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           GC P+ +TY  L+  +    + +EA  +  EM   G       YN ++ +  +     + 
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVA 479

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +  EM  +GC PD  +Y  LI GL   DR  EA++    ML  G  A  + YN     
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L R G       L   M F G
Sbjct: 540 LLRRGAFQKALTLVNDMLFRG 560



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 66/418 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  ++ TY  ++  L R  +      +L ++       + T    +N +  + + K+A 
Sbjct: 318 GFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTL---INGYVMSGQLKEAQ 374

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +   E M  + F+  + T N L+  L +      A+ L +++  R   PN+ TY +L+ G
Sbjct: 375 SFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNG 434

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   L EAG V +EM  +G   + V +N ++  L +  K   A+ L   M  KG  P+
Sbjct: 435 LCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPD 494

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I+  CK                     N   Y  LI     R        L+ 
Sbjct: 495 LFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVN 554

Query: 458 EMEERGCPPDGLTYNALIK------------------------------------LMKIQ 481
           +M  RGC  D +TYN LIK                                    L K+ 
Sbjct: 555 DMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVG 614

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           K+ D A    ++ +  GF P I TYN ++    + G  +    ++D +   G  PD  +Y
Sbjct: 615 KV-DNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTY 673

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDEL 595
              I     +    +A  +    +E G     L +N     L +        +VLDEL
Sbjct: 674 NTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 170/408 (41%), Gaps = 60/408 (14%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   NS  Y +++  L +  Q    + +LEEM   G +  ++TF   ++      +  
Sbjct: 246 KHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH 305

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
            A  + + M    F     T   LL  L R     EA+ +  K+     PN      L+ 
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP---CPNNAILNTLIN 362

Query: 357 GWCRVKNLMEAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G+     L EA    NE MI+ GF+PD+  +NI++ GL K G  S A  L   M  +G  
Sbjct: 363 GYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y I++   CK                     N+ +Y CLI     + ++ +  +L
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 456 LKEMEERGCPPD-----------------------------------GLTYNALIKLMKI 480
           L EM  +GC PD                                    +TYN LI  +  
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLR 542

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           +    +A+ +  +M+  G      TYN ++K++ + GN E G +++++MI  G   D  S
Sbjct: 543 RGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTIS 602

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             ++I GL    +   A+++L + + +G    ++ YN     L + GR
Sbjct: 603 CNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 175/404 (43%), Gaps = 50/404 (12%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAK 293
            G + G+ H    Y   ++ LG   +F+ +  +L +M E+G++  E+ F I M  +  A 
Sbjct: 102 VGGQKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAG 161

Query: 294 ERKKAV-AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTY 351
           +  +A+  + ++   Y  +    + + +LE L     P+ A  + +D L    +P + T+
Sbjct: 162 QPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTF 221

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            +++   C    +  A  +  +M   G  P+ + +  ++  L +  + S+A+KL E M  
Sbjct: 222 GIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFV 281

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G  P+V+++  +I   CK N               ++     L+  M  RG  PD +TY
Sbjct: 282 MGCMPDVQTFNDVIHGLCKVN---------------KIHDATKLVDRMLLRGFYPDNMTY 326

Query: 472 NALIK-LMKIQKM------------PDEAVR-------------------IYKEMVRSGF 499
             L+  L +I K+            P+ A+                    + + M+  GF
Sbjct: 327 GFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGF 386

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P I TYN++M    + G+    R + +EM RRGC P+  +Y +L+ GL       EA  
Sbjct: 387 QPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGL 446

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EM  +G+    + YN     L R  + +V   L  +M   G
Sbjct: 447 VLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG 490



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 160/381 (41%), Gaps = 27/381 (7%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFEL 304
           ++Y+ ++ IL      +   ++  +M  KG+  ++ TF I M A     E   A ++   
Sbjct: 184 KSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRD 243

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M K+           L+  L +     EA +LL +       P++ T+  ++ G C+V  
Sbjct: 244 MTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNK 303

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN------ 417
           + +A ++ + M+ +GF PD + +  +L GL +IGK ++A K+      K P PN      
Sbjct: 304 IHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL----IKIPCPNNAILNT 359

Query: 418 -VRSYTI--------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +  Y +              MI    + +   Y  L+ G      +    DL+ EM  R
Sbjct: 360 LINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           GC P+ +TY  L+  +    + +EA  +  EM   G       YN ++ +  +     + 
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVA 479

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
             +  EM  +GC PD  +Y  LI GL   DR  EA++    ML  G  A  + YN     
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHA 539

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L R G       L   M F G
Sbjct: 540 LLRRGAFQKALTLVNDMLFRG 560



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 66/418 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  ++ TY  ++  L R  +      +L ++       + T    +N +  + + K+A 
Sbjct: 318 GFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTL---INGYVMSGQLKEAQ 374

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +   E M  + F+  + T N L+  L +      A+ L +++  R   PN+ TY +L+ G
Sbjct: 375 SFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNG 434

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   L EAG V +EM  +G   + V +N ++  L +  K   A+ L   M  KG  P+
Sbjct: 435 LCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPD 494

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  +I+  CK                     N   Y  LI     R        L+ 
Sbjct: 495 LFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVN 554

Query: 458 EMEERGCPPDGLTYNALIK------------------------------------LMKIQ 481
           +M  RGC  D +TYN LIK                                    L K+ 
Sbjct: 555 DMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVG 614

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           K+ D A    ++ +  GF P I TYN ++    + G  +    ++D +   G  PD  +Y
Sbjct: 615 KV-DNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTY 673

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDEL 595
              I     +    +A  +    +E G     L +N     L +        +VLDEL
Sbjct: 674 NTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 177/402 (44%), Gaps = 56/402 (13%)

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           LGRA      +++L  M   G +     ++  ++A  A     +A  + + M      A 
Sbjct: 190 LGRAGD---ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD 246

Query: 314 VDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN--------- 363
           V+T N L+  L G  ++ + A+L+   +     P++ TY  LL G CR +          
Sbjct: 247 VNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLG 306

Query: 364 ----------------------LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
                                 L  A  ++  M  KG  PDV  ++I++ GL K+G+   
Sbjct: 307 RLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGS 366

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLIT 441
           A+++ + M+ KG +PN+ +Y+ ++  FC+                     N+  Y  +I 
Sbjct: 367 AVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIY 426

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                 ++D    L++EM+ +GC PD  TYN +I  +    + +EA  I++ ++  G   
Sbjct: 427 ALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVA 486

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              TYN ++ +  + G ++ G ++  EM+  GC  D  SY  LI  L  +     +   L
Sbjct: 487 NGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALL 546

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EEM+ KG+K     YN    +L +AG+     EL+++M   G
Sbjct: 547 EEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 588



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 191/424 (45%), Gaps = 31/424 (7%)

Query: 199 EAVLDECG--INLSHNLVVDV--LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           E +L  C   +N  ++LV+ +  L R R A R   R         G   +  TY  ++  
Sbjct: 237 EMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMM-----TQGCMPSVVTYGFLLQG 291

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           L R RQ +   +ML  + E  ++ + T    +       +  +A  ++E+M        V
Sbjct: 292 LCRTRQADEACAMLGRLPEVNVVMLNTV---IRGCLTEGKLARATELYEMMGSKGCPPDV 348

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T + L+  L +      A  + D+++ +   PN+ TY+ LL  +CR     +A  + ++
Sbjct: 349 HTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 408

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M+ KGF  +   +N ++  L K GK   A +L + MK++G  P++ +Y  MI+  C    
Sbjct: 409 MLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLC---- 464

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                      N   M+    + + + E G   +G+TYN LI  +       E +R+  E
Sbjct: 465 -----------NNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASE 513

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M+  G +  + +YN ++K+  + GN +    + +EM+ +G  P++ SY +LI  L    +
Sbjct: 514 MLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGK 573

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM---RFSGKFEVSNV 610
             +A +  +EML +G+   ++ YN     L + G ++    L +K+            N+
Sbjct: 574 VRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNI 633

Query: 611 LARW 614
           L  W
Sbjct: 634 LISW 637



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 138/320 (43%), Gaps = 19/320 (5%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLL 336
           S  ++ + ++  A A     A+ ++  M + +      T       L R     +A  LL
Sbjct: 141 SFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALL 200

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               +H   P+   Y  ++        + EA  + +EM+  G   DV   N ++ GL  +
Sbjct: 201 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGL 260

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC----------------LI 440
           G+  +A +L + M  +G  P+V +Y  ++   C+   A   C                +I
Sbjct: 261 GRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVI 320

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF 499
            G     ++    +L + M  +GCPPD  TY+ L+  L K+ +    AVR+  EM   G 
Sbjct: 321 RGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRF-GSAVRMLDEMEEKGC 379

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P I TY+ ++ S+ + G ++  R + D+M+ +G   +   Y  +I  L    +  +A +
Sbjct: 380 APNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATR 439

Query: 560 YLEEMLEKGMKAPVLDYNKF 579
            ++EM  +G K  +  YN  
Sbjct: 440 LVQEMKSQGCKPDICTYNTM 459



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 25/308 (8%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           ++ G A N  TY++++    R   ++   +ML++M  KG  SM +       +A  K+ K
Sbjct: 375 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGF-SMNSQGYNGIIYALCKDGK 433

Query: 297 --KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTV 353
             +A  + + M     K  + T N ++ +L  + L +EA+ +F  L +     N  TY  
Sbjct: 434 LDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNT 493

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+    R     E  R+ +EM+  G + DV+++N +++ L K G    ++ L E M  KG
Sbjct: 494 LIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKG 553

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
             PN  SY ++I + CK                     +   Y  LI G           
Sbjct: 554 IKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAAL 613

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +LL+++      PD +TYN LI      ++ D+A  +  + +  G  P   T+ M+++++
Sbjct: 614 NLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNF 673

Query: 514 F-QTGNYE 520
             QT N E
Sbjct: 674 VRQTVNLE 681



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 455 LLKEMEER-GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           LL +M  R    P   +YN ++  +       +A+ +Y+ M+R    PT  T+ +  ++ 
Sbjct: 128 LLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARAL 187

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G       +   M R GC PD   Y  +I  L++Q    EA   L+EML  G  A V
Sbjct: 188 CRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADV 247

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             +N     L   GR      L  +M   G
Sbjct: 248 NTFNDLVLGLCGLGRVREAARLVDRMMTQG 277



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
              P   ++N++L  L +    +DA+ L+  M      P   ++ +     C+       
Sbjct: 137 AVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLG----- 191

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                     R      LL+ M   GC PD + Y  +I  +  Q    EA  +  EM+  
Sbjct: 192 ----------RAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLM 241

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G    ++T+N ++      G      ++ D M+ +GC P   +Y  L+ GL    ++ EA
Sbjct: 242 GCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEA 301

Query: 558 YKYLEEMLE 566
              L  + E
Sbjct: 302 CAMLGRLPE 310



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 402 AIKLFEVMKAK-GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           A+ L + M  +   SP+ RSY +++    + +      L+      RRM         + 
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLY-----RRM---------LR 170

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           +R  PP   T+    + +       +A+ + + M R G  P    Y  ++ +    G   
Sbjct: 171 DR-VPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVA 229

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
               + DEM+  GC  D N++  L+ GL    R  EA + ++ M+ +G    V+ Y    
Sbjct: 230 EAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLL 289

Query: 581 ADLSR 585
             L R
Sbjct: 290 QGLCR 294


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 174/374 (46%), Gaps = 27/374 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G    +  +N ++  L RA +    + +  +M +       T+   ++  + A   + AV
Sbjct: 110 GMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAV 169

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGW 358
            + + M   +      T+  ++++L       +A+ L +++ HR    N  TY+ L+ G 
Sbjct: 170 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229

Query: 359 CRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C+ + L EA   +  E+  +GF PD+V ++ +++GL K G+  DA+ +FE M     +P 
Sbjct: 230 CKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC---APT 286

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I  +C+                     +   YT L++ F    R+D  Y+L +
Sbjct: 287 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQ 346

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M      PD +T+ +L+  +  +   ++A+ + +E+ R G  PTI+TYN ++  Y ++ 
Sbjct: 347 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSN 406

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP--VLD 575
                 ++  +   RG  P+  +Y +L+ G     R+ +A +YL+++  +G   P  V  
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 466

Query: 576 YNKFAADLSRAGRS 589
           Y      L R GR+
Sbjct: 467 YAIILDALCRDGRT 480



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 171/359 (47%), Gaps = 26/359 (7%)

Query: 267 MLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENL 324
           ++EEM  +G+ +   T+   ++     +   +AVA+    + +  F   + T + +++ L
Sbjct: 206 LVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGL 265

Query: 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++   ++A  +F+++     P   TY  L+GG+CR  ++ EA R+  +M+D    PDV+
Sbjct: 266 CKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVI 323

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN------------ 432
            +  ++    K+G+  DA +LF+ M A   SP+V ++T ++   C +             
Sbjct: 324 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 433 ------AAVYT--CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                   +YT  C++ G+    ++    +L+ +   RG  P+ +TYN L+         
Sbjct: 384 TRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 443

Query: 485 DEAVRIYKEM-VRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           D+A++   ++    G  PT +  Y +I+ +  + G  +   + ++EMI+RG  P   ++ 
Sbjct: 444 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 503

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
            ++  L    +  +A++ LEEM++ G        +   +   RAG     DELA ++R 
Sbjct: 504 TVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 562



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 167/385 (43%), Gaps = 24/385 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G + +    N++++ L  AR   T +++ ++M E G ++  T+   ++    A+   +A+
Sbjct: 41  GLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAM 100

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
            +   M       G    N ++  L R+   + A  ++ ++     P+  TYT L+ G  
Sbjct: 101 GLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLS 160

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +   L +A +V  EM+     PD     ++++ L    +  DA +L E M  +G + N  
Sbjct: 161 KAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAI 220

Query: 420 SYTIMIWKFCK---------------------QNAAVYTCLITGFGNRRRMDIVYDLLKE 458
           +Y+ ++   CK                      +   Y+ +I G     R+    D+ +E
Sbjct: 221 TYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 280

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M    C P  +TYN+LI         DEA+R+  +MV     P + TY  +M ++ + G 
Sbjct: 281 MS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGR 337

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   +++ +M+     PD  ++T L+ GL  + R  +A + LEE+  +G    +  YN 
Sbjct: 338 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNC 397

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
                 ++ +    +EL    R  G
Sbjct: 398 VVDGYCKSNQVRKAEELVADFRSRG 422



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 28/322 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSML-EEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
           G A N+ TY++++  L +  + +  V++L  E+  +G    + T+   ++    A   + 
Sbjct: 214 GMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRD 273

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           AV IFE M+         T N L+    R+    EA  L  K+      P++ TYT L+ 
Sbjct: 274 AVDIFEEMSCAPTAI---TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMS 330

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            +C++  L +A  ++ +M+     PDVV    +++GL   G+  DA++L E +  +G  P
Sbjct: 331 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 390

Query: 417 NVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLL 456
            + +Y  ++  +CK N                       Y  L+ G     R D     L
Sbjct: 391 TIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 450

Query: 457 KEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
            ++   G  CP     Y  ++  +      D+AV+ Y+EM++ G+ P   T+  ++ +  
Sbjct: 451 DQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALC 510

Query: 515 QTGNYEMGRKVWDEMIRRGCCP 536
           +    +   ++ +EMI+ G  P
Sbjct: 511 KAHQPQQAHELLEEMIKYGHTP 532



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 26/341 (7%)

Query: 281 TFKIAMNAF-AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
           TF + +    A+AK R     + + +           +N +L  L  ++    A  LFDK
Sbjct: 12  TFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDK 71

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +      N TTY  L+   C+ + L EA  +  +M  +G  P  + HN+++ GL + G+ 
Sbjct: 72  MAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRL 131

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A+ ++  M    P P+  +YT ++    K                     +    T +
Sbjct: 132 RHALGVYRQMNDAHP-PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSG 498
           +       R+D   +L++EM  RG   + +TY+AL+  L K +++ +    +  E+ R G
Sbjct: 191 VQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRG 250

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           F P I TY+ ++    + G       +++EM    C P   +Y  LIGG        EA 
Sbjct: 251 FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAI 307

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           + L +M++      V+ Y    +   + GR     EL Q+M
Sbjct: 308 RLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQM 348



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 130/292 (44%), Gaps = 19/292 (6%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVA 300
           A  + TYNS++    RA   +  + +L +M +      + T+   M+AF        A  
Sbjct: 284 APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYE 343

Query: 301 IFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
           +F+ M   K    V T   L++ L G  ++    +LL +  +    P + TY  ++ G+C
Sbjct: 344 LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYC 403

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG-PSP-N 417
           +   + +A  +  +   +GF P+ V +NI++ G  + G+   A++  + + ++G P P +
Sbjct: 404 KSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTS 463

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V  Y I++   C+                 R D      +EM +RG  P   T+  ++  
Sbjct: 464 VAMYAIILDALCRDG---------------RTDDAVQFYEEMIQRGYVPAAATFATVVFA 508

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           +     P +A  + +EM++ G  P   T + ++ +Y + G  +   ++  E+
Sbjct: 509 LCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 22/321 (6%)

Query: 246  RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
              YNS++  L +AR  E    +  +M   G    + T+ + ++A   + + K+   ++E 
Sbjct: 789  EAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEE 848

Query: 305  MNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
            M     K    T N ++  L +S  L K   L +D +   F+P   TY  L+ G  ++  
Sbjct: 849  MLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGR 908

Query: 364  LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
            L EA + + EM+D G  P+   +NI++ G  K G    A +LF  M  +G  P+++SY+I
Sbjct: 909  LEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSI 968

Query: 424  MIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            M+   C                      +   Y  +I G G  +R++    L  EM  RG
Sbjct: 969  MVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRG 1028

Query: 464  CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              PD  TYNALI  + I  M +EA ++Y+E+   G +P + TYN +++ +  +GN +   
Sbjct: 1029 ITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAY 1088

Query: 524  KVWDEMIRRGCCPDDNSYTVL 544
             V+ +M+  GC P+  ++  L
Sbjct: 1089 AVYKKMMVGGCRPNTGTFAQL 1109



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 163/363 (44%), Gaps = 17/363 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + +TY+++M  LG+ R  ET++ +L+EM   GL  ++ TF I +     A +  +A
Sbjct: 222 GIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEA 281

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
             I + M+       V T   L++ L  +     A+ LF K+K     P+  TY  LL  
Sbjct: 282 YGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDK 341

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +    +L      W+EM   G+ PDVV   I+++ L K+GK  +A    +VMK +G +PN
Sbjct: 342 FSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPN 401

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y  +I    + N               R+D   +L   ME  G      TY   I  
Sbjct: 402 LHTYNTLICGLLRLN---------------RLDEALELFNSMESLGLETTAYTYILFIDY 446

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   +A++ +++M  +G  P I   N  + S  + G  E  ++ ++ + + G  PD
Sbjct: 447 YGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y +L+       R  +A K L EM E G    V+  N     L +A R     ++ Q
Sbjct: 507 AITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQ 566

Query: 598 KMR 600
           +M+
Sbjct: 567 RMK 569



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 16/327 (4%)

Query: 278  SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
            S+E +   ++    A+  + A  +F  M        V T N  L+ LG+S   KE   L+
Sbjct: 787  SLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLY 846

Query: 338  DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            +++  R   PN  T+ +++ G  +  +L +A  ++ +++   F P    +  +++GLLK+
Sbjct: 847  EEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906

Query: 397  GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
            G+  +A + FE M   G               C  N  +Y  L+ GFG +  ++   +L 
Sbjct: 907  GRLEEAKQFFEEMLDYG---------------CMPNCPLYNILMNGFGKQGDVETACELF 951

Query: 457  KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            + M + G  PD  +Y+ ++  + +    D+A+  ++E+  SG  P +  YN+++    ++
Sbjct: 952  RRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRS 1011

Query: 517  GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
               E    ++DEM  RG  PD  +Y  LI  L       EA K  EE+  KG++  V  Y
Sbjct: 1012 QRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTY 1071

Query: 577  NKFAADLSRAGRSYVLDELAQKMRFSG 603
            N      S +G       + +KM   G
Sbjct: 1072 NALIRGHSMSGNPDRAYAVYKKMMVGG 1098



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 158/376 (42%), Gaps = 69/376 (18%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           AF FF    + P   H + T N ++ +L   R+ E MV                      
Sbjct: 105 AFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMV---------------------- 142

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTP 346
                        +F LM K   K  ++T   + + L      +EA +  +K+ K  F  
Sbjct: 143 ------------VVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVL 190

Query: 347 NLTTYTVLL-----GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           N  +Y  L+      G+CR     EA +V+  M+ +G KP +  ++ ++  L   GKR D
Sbjct: 191 NGYSYIGLIHLLLKSGFCR-----EALKVYRRMVSEGIKPSLKTYSALMVAL---GKRRD 242

Query: 402 ---AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
               + L + M++ G  PN+ ++TI I                  G   ++D  Y +LK 
Sbjct: 243 IETVMGLLQEMESLGLRPNIYTFTICIRIL---------------GRAGKIDEAYGILKR 287

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M++ GC PD +TY  LI  +      + A  ++ +M  S  KP   TY  ++  +   G+
Sbjct: 288 MDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGD 347

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +  ++ W EM   G  PD  ++T+LI  L    +  EA+  L+ M ++G+   +  YN 
Sbjct: 348 LDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNT 407

Query: 579 FAADLSRAGRSYVLDE 594
               L R  R   LDE
Sbjct: 408 LICGLLRLNR---LDE 420



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 130/294 (44%), Gaps = 22/294 (7%)

Query: 332  EAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
            +A  +F KL   F  TP+L  Y  L+ G  + +    A  ++ +M + G  PDV  +N+ 
Sbjct: 770  DAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLF 829

Query: 390  LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA--------------- 434
            L+ L K GK  +   L+E M  +G  PN  ++ I+I+   K N+                
Sbjct: 830  LDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDF 889

Query: 435  -----VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                  Y  LI G     R++      +EM + GC P+   YN L+     Q   + A  
Sbjct: 890  SPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACE 949

Query: 490  IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            +++ MV+ G +P + +Y++++      G  +     ++E+   G  PD   Y ++I GL 
Sbjct: 950  LFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLG 1009

Query: 550  SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               R  EA    +EM  +G+   +  YN    +L  AG      ++ ++++  G
Sbjct: 1010 RSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKG 1063



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 148/364 (40%), Gaps = 25/364 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G A ++ TYN +M   G+A + +  + +L EM E G    +      ++    A    
Sbjct: 500 KCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVD 559

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +A  +F+ M + K    V T N LL  LG+    +EA  LF   +     PN  ++  LL
Sbjct: 560 EAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLL 619

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+   +  A ++   M +    PDV+ +N ++ GL+K  + + A  LF  MK K   
Sbjct: 620 DCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMK-KVIY 678

Query: 416 PNVRSYTIMIWKFCKQNAA-----VYTCLITGFGNRRRMDIVYDLL------KEMEERGC 464
           P+  +   ++    K         V    +   G+        DL+       E+ +   
Sbjct: 679 PDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSIL 738

Query: 465 PPDGLTYN-------ALIKLMKIQKMPDEAVRIYKEMVRSG----FKPTIHTYNMIMKSY 513
             + L  N        LI L+K      +AV  Y   ++        P++  YN ++   
Sbjct: 739 FAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGL 798

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +    EM   ++ +M   GC PD  +Y + +  L    +  E +   EEML +G K   
Sbjct: 799 LKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNT 858

Query: 574 LDYN 577
           + +N
Sbjct: 859 ITHN 862


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 154/305 (50%), Gaps = 28/305 (9%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL----GRSKLPKEAQLL 336
           TF + +NA     +  KA  + E M  Y     V + N L++      G  K+ K   +L
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVL 284

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            + +++  +PNLTT+ +L+ G+ +  NL  + +V+ EM+D+  KP+V+++N ++ GL   
Sbjct: 285 KEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNG 344

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           GK S+AI + + M + G  PN+ +Y  +I  FCK +                +    D+ 
Sbjct: 345 GKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDM---------------LKEALDMF 389

Query: 457 KEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             ++ +G  P    YN LI    KL KI    D+   + +EM R G  P + TYN ++  
Sbjct: 390 GSVKGQGAVPTTRMYNMLIDAYCKLGKI----DDGFALKEEMEREGIVPDVGTYNCLIAG 445

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + GN E  +K++D++  +G  PD  ++ +L+ G   +  S +A   L+EM + G+K  
Sbjct: 446 LCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR 504

Query: 573 VLDYN 577
            L YN
Sbjct: 505 HLTYN 509



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 23/257 (8%)

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           V+ EMI +  +P+V   N+++  L K GK + A  + E MK  G SPNV SY  +I  +C
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269

Query: 430 K-----------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           K                        N   +  LI GF     +     + KEM ++   P
Sbjct: 270 KLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKP 329

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + ++YN+LI  +       EA+ +  +MV +G +P + TYN ++  + +    +    ++
Sbjct: 330 NVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMF 389

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
             +  +G  P    Y +LI       +  + +   EEM  +G+   V  YN   A L R 
Sbjct: 390 GSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449

Query: 587 GRSYVLDELAQKMRFSG 603
           G      +L  ++   G
Sbjct: 450 GNIEAAKKLFDQLTSKG 466



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 33/276 (11%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N  TYN++++   +    +  + M   + G+  + +   + + ++A+    +    
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            A+ E M +      V T NCL+  L R+   + A+ LFD+L  +  P+L T+ +L+ G+
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGY 480

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR     +A  +  EM   G KP  + +NI+++G  K G    A  +   M+ +      
Sbjct: 481 CRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKE------ 534

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                   +  + N A Y  L+ G+  + +++    LL EM E+G  P+ +TY       
Sbjct: 535 --------RRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY------- 579

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTI--HTYNMIMKS 512
                  E V+  +EMV  GF P I  H +N+  KS
Sbjct: 580 -------EIVK--EEMVDQGFVPDIEGHLFNVSTKS 606



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 20/204 (9%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+K   ++   ++  LLK  + +D   +++ M  +   PNV ++ ++I   CK       
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCK------- 235

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKE 493
              TG  N+ R     D++++M+  GC P+ ++YN LI    KL    KM  +A  + KE
Sbjct: 236 ---TGKMNKAR-----DVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY-KADAVLKE 286

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV +   P + T+N+++  +++  N     KV+ EM+ +   P+  SY  LI GL +  +
Sbjct: 287 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK 346

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYN 577
             EA    ++M+  G++  ++ YN
Sbjct: 347 ISEAISMRDKMVSAGVQPNLITYN 370



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 2/167 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           ++ G   +  TYN +++ L R    E    + +++  KGL  + TF I M  +    E +
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESR 487

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVL 354
           KA  + + M+K   K    T N +++   +    K A  +  ++  + R   N+ +Y VL
Sbjct: 488 KAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVL 547

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           L G+ +   L +A  + NEM++KG  P+ + + I+ E ++  G   D
Sbjct: 548 LQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPD 594



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL-IKLMKIQKMPDEAVRI 490
           N+ +   L+  + N  R ++ ++  K     G     L+   L I L+K  +  D    +
Sbjct: 152 NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSAD-VEYV 210

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           YKEM+R   +P + T+N+++ +  +TG     R V ++M   GC P+  SY  LI G   
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270

Query: 551 QDRSGEAYK---YLEEMLEKGMKAPVLDYN 577
              +G+ YK    L+EM+E  +   +  +N
Sbjct: 271 LGGNGKMYKADAVLKEMVENDVSPNLTTFN 300


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 175/375 (46%), Gaps = 24/375 (6%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-G 272
           ++D L + R   + AF  F     + G + +  TYNS++  L    +++ + ++L EM  
Sbjct: 205 IIDSLCKDRQVTQ-AFNLFSEMIHQ-GISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN 262

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
            K + ++  F   ++A     +  +A  + ++M K   +  V T N L++         E
Sbjct: 263 SKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 322

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A  +FD +  + F P++ +Y+ L+ G+C+++ + +A  ++ EM  K   P+ V ++ ++ 
Sbjct: 323 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 382

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
           GL  +G+  DAI LF  M  +G  P+  SY I++   CK                     
Sbjct: 383 GLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDP 442

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +  +YT +I G      ++   DL   +  +G  P+  TY  +I  +  Q +  EA +++
Sbjct: 443 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLF 502

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM R G+ P   TYN+I + + +      G ++  EM+ RG   D ++ TVL+  L   
Sbjct: 503 GEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDD 562

Query: 552 DRSGEAYKYLEEMLE 566
                  + L E L+
Sbjct: 563 GLDQSVKQILSEFLQ 577



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 161/372 (43%), Gaps = 20/372 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            Y S++  L + RQ     ++  EM  +G+  S+ T+   ++A     E K   A+   M
Sbjct: 201 VYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM 260

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
              K    V   + +++ L +     EA  + D +  R   PN+ TY  L+ G C    +
Sbjct: 261 VNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM 320

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA +V++ M+ KGF PDVV+++ ++ G  KI +   A+ LFE M  K   PN  +Y+ +
Sbjct: 321 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 380

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   C                  R+     L  EM  RG  PD ++Y  L+  +   +  
Sbjct: 381 MHGLCHVG---------------RLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRL 425

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           DEA+ + K +  S   P I  Y +++    + G  E  R ++  +  +G  P+  +YT++
Sbjct: 426 DEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIM 485

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR---F 601
           I GL  Q    EA K   EM  KG       YN       R   +    +L Q+M    F
Sbjct: 486 INGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGF 545

Query: 602 SGKFEVSNVLAR 613
           S     S VL  
Sbjct: 546 SADVSTSTVLVE 557



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 162/351 (46%), Gaps = 22/351 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  ++  + + + + T++S+  +M   G+  ++ T  I +N+F   +    A ++   + 
Sbjct: 62  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKIL 121

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +  + T N L+  L       E   LFDK+    F PN+ TY  L+ G C+V +  
Sbjct: 122 KLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTS 181

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M     +PDVV +  +++ L K  + + A  LF  M  +G SP++ +Y  +I
Sbjct: 182 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLI 241

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      N  +++ ++       ++   +D++  M +RG  
Sbjct: 242 HALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 301

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYNAL+    ++   DEAV+++  MV  GF P + +Y+ ++  Y +    E    +
Sbjct: 302 PNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYL 361

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           ++EM R+   P+  +Y+ L+ GL    R  +A     EM+ +G     + Y
Sbjct: 362 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 412



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 15/234 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ T  +L+  +C ++ L  A  V  +++  G +P++   N ++ GL   GK  + + L
Sbjct: 92  PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 151

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F+ M  +G  PNV +Y  +I   CK  +                     LL+ ME+  C 
Sbjct: 152 FDKMIGEGFQPNVVTYGTLINGLCKVGST---------------SAAIRLLRSMEQGNCQ 196

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + Y ++I  +   +   +A  ++ EM+  G  P+I TYN ++ +      ++    +
Sbjct: 197 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 256

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            +EM+     P+   ++ ++  L  + +  EA+  ++ M+++G++  V+ YN  
Sbjct: 257 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 310



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 20/219 (9%)

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
           +HN      L      DA+  F  M    P P++  +T ++    K              
Sbjct: 26  SHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQM 85

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N      LI  F + +R+   + +L ++ + G  P+  T+N LI+ + ++   
Sbjct: 86  DSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKI 145

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            E + ++ +M+  GF+P + TY  ++    + G+     ++   M +  C PD   YT +
Sbjct: 146 GEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSI 205

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           I  L    +  +A+    EM+ +G+   +  YN     L
Sbjct: 206 IDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 244



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 20/238 (8%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC- 429
           +N M+     P +     +L  + K+   S  + L   M + G  PN+ +  I+I  FC 
Sbjct: 47  FNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCH 106

Query: 430 -------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                              + N A +  LI G     ++  V  L  +M   G  P+ +T
Sbjct: 107 LQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVT 166

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  LI  +        A+R+ + M +   +P +  Y  I+ S  +         ++ EMI
Sbjct: 167 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI 226

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +G  P   +Y  LI  L +          L EM+   +   V+ ++     L + G+
Sbjct: 227 HQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 284



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 57/136 (41%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP    +  L+  +   K     + +  +M   G  P I+T N+++ S+           
Sbjct: 56  PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFS 115

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++++ G  P+  ++  LI GL  + + GE     ++M+ +G +  V+ Y      L 
Sbjct: 116 VLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLC 175

Query: 585 RAGRSYVLDELAQKMR 600
           + G +     L + M 
Sbjct: 176 KVGSTSAAIRLLRSME 191


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 187/415 (45%), Gaps = 42/415 (10%)

Query: 231 FFCWAGDKPG--FAHNSRTYNSMMSILGRARQF---ETMVSMLEEMGEKGLLS------M 279
           FF W        F H  ++Y +M+  L   +     +T++ ++     KG  S      +
Sbjct: 1   FFTWLSSPTNSTFRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAIL 60

Query: 280 ET----------FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329
           ET          F   + A+  +   + A+  + L  ++KF+   DT   +LE+L + K 
Sbjct: 61  ETKGTQRSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKY 120

Query: 330 PKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
            K     +++ L+  +  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N 
Sbjct: 121 FKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNT 180

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           ++ G +K+G  ++  +L + M+A G  P+V +Y+++I   CK+                 
Sbjct: 181 LMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXG 240

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              N   +T LI G     R+D+  ++ K+M  +   PD +TYN LI  +  +    +A 
Sbjct: 241 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQ 300

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            +  EM   G KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL
Sbjct: 301 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGL 360

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + RS +A K L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 361 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 415



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 147/315 (46%), Gaps = 22/315 (6%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M++F    E + A ++F+ + K+  +  
Sbjct: 115 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 174

Query: 314 VDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+   +    L +  +L          P++ TY+VL+ G C+   + +   +++
Sbjct: 175 VVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFD 234

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+D G  P+ V    +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK+ 
Sbjct: 235 EMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKG 294

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++    M +     D + Y 
Sbjct: 295 DLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYT 354

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 355 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRD 414

Query: 533 GCCPDDNSYTVLIGG 547
           G  P   +Y VL+ G
Sbjct: 415 GYVPSVVTYNVLMNG 429


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 188/412 (45%), Gaps = 42/412 (10%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           D  +E + D   + L+   V  VL   +   + AF+FF W+  + GF H+  +Y  +  I
Sbjct: 95  DPGLEKLFD---LTLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHI 151

Query: 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA-KERKKAVAIFELMNKYKFKAG 313
           L  AR +    S+L+EM    +LS    K   + F      R   V  F +         
Sbjct: 152 LFCARMYYDANSVLKEM----VLS----KADCDVFDVLWSTRNVCVPGFGVF-------- 195

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
            D +  +L +LG   + +EA   F K+K  R  P   +   LL  + ++    +  R + 
Sbjct: 196 -DALFSVLIDLG---MLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFK 251

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           +MI  G +P V  +NIM++ + K G    A  LFE MK +G  P+  +Y  MI       
Sbjct: 252 DMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMI------- 304

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIY 491
                    GFG   R+D      +EM++  C PD +TYNALI    K  K+P   +  Y
Sbjct: 305 --------DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP-IGLEFY 355

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           +EM  +G KP + +Y+ ++ ++ + G  +   K + +M R G  P++ +YT LI      
Sbjct: 356 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 415

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               +A++   EML+ G++  V+ Y      L  A R    +EL  KM  +G
Sbjct: 416 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 146/325 (44%), Gaps = 19/325 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++ TYNSM+   G+  + +  V   EEM +      + T+   +N F    +    
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           +  +  M     K  V + + L++   +  + ++A +   D  +    PN  TYT L+  
Sbjct: 352 LEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++ NL +A R+ NEM+  G + +VV +  +++GL    +  +A +LF  M   G  PN
Sbjct: 412 NCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           + SY          NA     LI GF   + MD   +LL E++ RG  PD L Y   I  
Sbjct: 472 LASY----------NA-----LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWG 516

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L  ++K+ + A  +  EM   G K     Y  +M +YF++GN   G  + DEM       
Sbjct: 517 LCSLEKI-EAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEV 575

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYL 561
              ++ VLI GL       +A  Y 
Sbjct: 576 TVVTFCVLIDGLCKNKLVSKAVDYF 600



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 144/354 (40%), Gaps = 22/354 (6%)

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           +R+ N ++    +  + + +    ++M G     ++ T+ I ++      + + A  +FE
Sbjct: 227 TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFE 286

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVK 362
            M          T N +++  G+     +    F+++K     P++ TY  L+  +C+  
Sbjct: 287 EMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            L      + EM   G KP+VV+++ +++   K G    AIK +  M+  G  PN  +YT
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406

Query: 423 IMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +I   CK                     N   YT LI G  +  RM    +L  +M+  
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  P+  +YNALI      K  D A+ +  E+   G KP +  Y   +         E  
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 526

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           + V +EM   G   +   YT L+          E    L+EM E  ++  V+ +
Sbjct: 527 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTF 580



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 133/322 (41%), Gaps = 23/322 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY S++    +         +  EM + G+  ++ T+   ++    A+  K+A
Sbjct: 397 GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEA 456

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M+       + + N L+    ++K    A  L ++LK R   P+L  Y   + G
Sbjct: 457 EELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWG 516

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C ++ +  A  V NEM + G K + + +  +++   K G  ++ + L + MK       
Sbjct: 517 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT 576

Query: 418 VRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           V ++ ++I   CK                      NAA++T +I G     +++    L 
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 636

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           ++M ++G  PD   Y +L+     Q    EA+ +  +M   G K  +  Y  ++      
Sbjct: 637 EQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHC 696

Query: 517 GNYEMGRKVWDEMIRRGCCPDD 538
              +  R   +EMI  G  PD+
Sbjct: 697 NQLQKARSFLEEMIGEGIHPDE 718



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 122/299 (40%), Gaps = 55/299 (18%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-----------------LLSM 279
           D  G   N  +YN+++    +A+  +  + +L E+  +G                 L  +
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKI 523

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG--------------------VDTINC 319
           E  K+ MN       +  ++    LM+ Y FK+G                    V T   
Sbjct: 524 EAAKVVMNEMKECGIKANSLIYTTLMDAY-FKSGNPTEGLHLLDEMKELDIEVTVVTFCV 582

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           L++ L ++KL  +A   F+++ + F    N   +T ++ G C+   +  A  ++ +M+ K
Sbjct: 583 LIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G  PD  A+  +++G  K G   +A+ L + M   G   ++ +YT ++W           
Sbjct: 643 GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVW----------- 691

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
               G  +  ++      L+EM   G  PD +   +++K        DEAV +   +++
Sbjct: 692 ----GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMK 746


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 173/418 (41%), Gaps = 40/418 (9%)

Query: 226 RPAFRFFCWAGDKPGF--AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283
           R A +F  W   +PG    H +  Y     IL +AR +++  S+L  + + G+ S   F 
Sbjct: 91  RLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFG 150

Query: 284 IAMNAFAAAKERKK-----------------AVAIFELMNKYKFKAGVDTINCLLENLGR 326
             M+ +                         AV  FEL+    FK  V T N +L ++ +
Sbjct: 151 ALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVK 210

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            K  +    LF ++  +   PN+ T+ +L+ G C   NL +AG +  +M + GF P +V 
Sbjct: 211 DKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVT 270

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
           +N +L    K G+   AI+L + M  KG   +V +Y + I   C                
Sbjct: 271 YNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMR 330

Query: 432 ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                 N   Y  LI GF    ++ +   +  EM +    P+ +TYNALI         +
Sbjct: 331 KEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFE 390

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+R+   M  +G +    TY  ++    +   +E+ +++ + M          +YTVLI
Sbjct: 391 EALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 450

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL       EA + +  M + G+   V+ Y+       R G      E+  +M  SG
Sbjct: 451 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 508



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  T+N +++ L      +   ++L++M E G + ++ T+   +N +      K A
Sbjct: 228 GICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAA 287

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + + + M     +A V T N  ++NL  +    +A LL  K+ K   +PN  TY  L+ G
Sbjct: 288 IELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLING 347

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   +  A +V+NEM      P+ V +N ++ G   +G   +A++L + M+A G    
Sbjct: 348 FVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAG---- 403

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                       + N   Y  L+ G     + ++   LL+ M         + Y  LI  
Sbjct: 404 -----------LRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDG 452

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +    M DEAV++   M + G  P + TY+ ++  + + GN +  +++   M R G   +
Sbjct: 453 LCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLN 512

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              Y+ LI          EA K    M   G  A     N   + L R G+
Sbjct: 513 KIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGK 563



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 161/386 (41%), Gaps = 30/386 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A +F C    + G   NS TY+ +++  G         S  ++M + G     +F    +
Sbjct: 567 AEKFLCHM-SRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCG--QHPSFFTYGS 623

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAG-VDTI--NCLLENLGRSKLPKEAQLLFDKL-KHR 343
                 +    V   + +N+  +  G VD++  N LL    +S    EA  LFDK+ ++ 
Sbjct: 624 LLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNN 683

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDA 402
             P+  TY+ LL G CR    + A  ++   + +G   P+ V +  +++GL K G    A
Sbjct: 684 VLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAA 743

Query: 403 IKLFEVMKAKGPSPNVRSYTIMI---------------------WKFCKQNAAVYTCLIT 441
              FE M  KG  P+  ++  +I                     W  C  N A Y  L+ 
Sbjct: 744 FYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCP-NLATYNILLH 802

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           GF  ++ +     L   M   G  PD LT+++LI  +    +PD  V++  +M+  G   
Sbjct: 803 GFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLA 862

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              T+N+++  Y ++G       + + M   G  PD ++Y  +  GL  +    E+   L
Sbjct: 863 DQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVL 922

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAG 587
            EMLE G+      Y      + R G
Sbjct: 923 HEMLENGVIPKHAQYITLINGMCRVG 948



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 17/298 (5%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
            + G   +  T++S++  L ++   +  V +L +M  +G L+ + TF I +N ++ + + +
Sbjct: 822  REGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMR 881

Query: 297  KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-LFDKLKHRFTPNLTTYTVLL 355
            KA  +   MN        DT N +   L +    +E+ + L + L++   P    Y  L+
Sbjct: 882  KAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLI 941

Query: 356  GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             G CRV ++  A ++ +EM   GF    VA + M+ GLL  GK  DA+ + + M      
Sbjct: 942  NGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLL 1001

Query: 416  PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            P + ++T ++ +FC+         + G                ME  G   D + YN LI
Sbjct: 1002 PTIATFTTLMHRFCRDAKIAEALKLKGV---------------MELCGLKLDVVAYNVLI 1046

Query: 476  KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
              M        A  +Y+EM      P I TY +++ +     N   G K+  ++  RG
Sbjct: 1047 MGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1104



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 169/436 (38%), Gaps = 61/436 (13%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ GF     TYN++++   +  +++  + +++ M  KG+   + T+ + ++        
Sbjct: 260 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
            KA  + + M K        T N L+    +  K+   AQ+  +  K   +PN  TY  L
Sbjct: 320 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNAL 379

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV------------------------------ 384
           +GG C V +  EA R+ + M   G + + V                              
Sbjct: 380 IGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDM 439

Query: 385 -----AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------- 431
                A+ ++++GL K G   +A++L   M   G +P+V +Y+ +I  FC+         
Sbjct: 440 VVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKE 499

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N  +Y+ LI  F     +     +   M   G   D  T N L+  + 
Sbjct: 500 IICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLC 559

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA +    M R G  P   TY+ I+  Y   G+       +D+MI+ G  P   
Sbjct: 560 RDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFF 619

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDEL 595
           +Y  L+ GL       EA K+L  +         + YN   A+  ++G  +    + D++
Sbjct: 620 TYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKM 679

Query: 596 AQKMRFSGKFEVSNVL 611
            Q       +  S++L
Sbjct: 680 VQNNVLPDSYTYSSLL 695



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 17/348 (4%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYN+++        FE  + +L+ M   GL L+  T+   +N     ++ + A  + 
Sbjct: 372 NCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLL 431

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           E M       G      L++ L ++ +  EA QL+ +  K    P++ TY+ L+ G+CRV
Sbjct: 432 ERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRV 491

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N+  A  +   M   G   + + ++ ++    + G  ++A+K++ VM   G   +  + 
Sbjct: 492 GNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTC 551

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
            +++   C+                 ++      L  M   G  P+ +TY+ +I      
Sbjct: 552 NVLVSSLCRDG---------------KLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 596

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
             P  A   + +M++ G  P+  TY  ++K   + GN    +K  + +       D   Y
Sbjct: 597 GDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMY 656

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             L+          EA    ++M++  +      Y+     L R G++
Sbjct: 657 NTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 704



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 22/224 (9%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC--LITGFG 444
           ++++   LK G    A++ FE++   G  P                 +VYTC  ++    
Sbjct: 167 DLLIRVYLKEGMIDYAVETFELVGLVGFKP-----------------SVYTCNMILASMV 209

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             +R ++V+ L +EM ++G  P+  T+N LI  + ++    +A  + K+M  +GF PTI 
Sbjct: 210 KDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIV 269

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN ++  Y + G Y+   ++ D MI +G   D  +Y V I  L +  RS +AY  L++M
Sbjct: 270 TYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKM 329

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
            ++ +    + YN       + G+  V  ++  +M    KF++S
Sbjct: 330 RKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEM---SKFDLS 370



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 155/370 (41%), Gaps = 24/370 (6%)

Query: 244  NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAI 301
            +S TY+S+++ L R  +  T V +      +G L  +   +   ++  + A   K A   
Sbjct: 687  DSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYF 746

Query: 302  FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCR 360
            FE M K          N ++++  R     +A   F  ++     PNL TY +LL G+ +
Sbjct: 747  FEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSK 806

Query: 361  VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
             + L+    +++ M+ +G  PD +  + ++ GL K G     +KL   M  +G   +  +
Sbjct: 807  KQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFT 866

Query: 421  YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
            + I+I K+ +                 +M   +DL+  M   G  PD  TYN +   +  
Sbjct: 867  FNILINKYSESG---------------KMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNK 911

Query: 481  QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +    E+  +  EM+ +G  P    Y  ++    + G+ +   K+ DEM   G    + +
Sbjct: 912  KSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 971

Query: 541  YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             + ++ GL+   ++ +A   L+ ML   +   +  +        R  +      +A+ ++
Sbjct: 972  ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAK------IAEALK 1025

Query: 601  FSGKFEVSNV 610
              G  E+  +
Sbjct: 1026 LKGVMELCGL 1035


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 18/333 (5%)

Query: 247 TYNSMMSILGR-ARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFEL 304
           TYN ++++ G+    +  +  + E M   G+L  E T+   +         ++A A+F+ 
Sbjct: 70  TYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKD 129

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKN 363
           M    F     T N LL+  G+S+  KEA  +  +++ +  +P++ TY  L+  + R   
Sbjct: 130 MKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGL 189

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           L EA  + N+M++ G   DV  +  +L G ++ GK   A+++F  M+A G          
Sbjct: 190 LKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAG---------- 239

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                CK N   +  LI   GNR +   +  + +E++   C PD +T+N L+ +     M
Sbjct: 240 -----CKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGM 294

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             E   ++KEM R+GF P   TYN ++ +Y + G+++    ++  M+  G  PD ++Y  
Sbjct: 295 DSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNA 354

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           ++  L       ++ K   EM +   K   L Y
Sbjct: 355 VLAALARGGLWEQSEKIFAEMKDGRCKPNELTY 387



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 25/361 (6%)

Query: 251 MMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309
           ++S+LG+  +     S+L ++ + G  L +  +   + A  +    ++AV +F+ M +  
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 310 FKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLME- 366
            K  + T N +L   G+  +P  + + LF+ +K+    P+  TY  L+   CR  +L E 
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLIT-CCRRGSLHEE 122

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A  V+ +M   GF PD V +N +L+   K  +  +A+++   M+  G SP++ +Y  +I 
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLIS 182

Query: 427 KFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            + +                     +   YT L++GF    + +    +  EM   GC P
Sbjct: 183 AYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKP 242

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           +  T+NALIK+   +    E +++++E+  S   P I T+N ++  + Q G       V+
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            EM R G  P+ ++Y  LI          +A    + MLE G+   +  YN   A L+R 
Sbjct: 303 KEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARG 362

Query: 587 G 587
           G
Sbjct: 363 G 363



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 174/434 (40%), Gaps = 92/434 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-------------------GEKGLL--S 278
           GF  +  TYN+++ + G++R+ +  + +L EM                      GLL  +
Sbjct: 134 GFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEA 193

Query: 279 ME---------------TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           ME               T+   ++ F  A + + A+ +F  M     K  + T N L++ 
Sbjct: 194 MELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKM 253

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
            G      E   +F+++K+    P++ T+  LL  + +     E   V+ EM   GF P+
Sbjct: 254 HGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 313

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--------IWKF------ 428
              +N ++    + G    A+ +++ M   G +P++ +Y  +        +W+       
Sbjct: 314 RDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFA 373

Query: 429 ------CKQNAAVYTCLITGFGNRRRMDIVY----------------------------D 454
                 CK N   Y  L+  + N + +  +                             D
Sbjct: 374 EMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCD 433

Query: 455 LLKEME-------ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           LL E E        +G  PD  T NA++ +   ++M  +   I   M  SGF P++ TYN
Sbjct: 434 LLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYN 493

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            +M  + ++ N+E   +V  E++ +G  PD  SY  +I       R  EA +   EM E 
Sbjct: 494 SLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRES 553

Query: 568 GMKAPVLDYNKFAA 581
           G+   V+ YN F A
Sbjct: 554 GLVPDVITYNTFVA 567



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 139/309 (44%), Gaps = 22/309 (7%)

Query: 317 INCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
           +  ++  LG+  K+   A LL D  K  F  ++  YT L+          EA  V+ +M 
Sbjct: 1   VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMI-----WKFC 429
           ++G KP ++ +N++L    K+G   + IK LFE MK  G  P+  +Y  +I         
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLH 120

Query: 430 KQNAAV---------------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           ++ AAV               Y  L+  +G  RR     ++L+EME  GC P  +TYN+L
Sbjct: 121 EEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSL 180

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I       +  EA+ +  +MV  G    + TY  ++  + + G  E   +V+ EM   GC
Sbjct: 181 ISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGC 240

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+  ++  LI    ++ +  E  K  EE+        ++ +N   A   + G    +  
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSG 300

Query: 595 LAQKMRFSG 603
           + ++M+ +G
Sbjct: 301 VFKEMKRAG 309



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 153/346 (44%), Gaps = 30/346 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++++ G+      +  + +EM   G +   +T+   ++A++      +A+ I++ M
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRM 340

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNL 364
            +      + T N +L  L R  L ++++ +F ++K  R  PN  TY  LL  +   K +
Sbjct: 341 LEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEI 400

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV----MKAKGPSPNVRS 420
                +  E+     +P    H ++L+ L+ +  + D +   EV    +K KG SP++ +
Sbjct: 401 GRMLALAEEICSGVIEP----HAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLST 456

Query: 421 YTIMI------WKFCKQNA--------------AVYTCLITGFGNRRRMDIVYDLLKEME 460
              M+        F K N               A Y  L+         +   ++LKE+ 
Sbjct: 457 LNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEIL 516

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G  PD ++YN +I          EA RI+ EM  SG  P + TYN  + SY     +E
Sbjct: 517 AKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFE 576

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
               V   MI+ GC P+ N+Y  ++ G    +   +A  ++  + E
Sbjct: 577 DAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHE 622



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 21/265 (7%)

Query: 155 DGECDGNNSESEITSVSY-KSTADPREIERVCKVIDELFSLDRNMEAVLDE--CGINLSH 211
           DG C  N    E+T  S   + A+ +EI R+  + +E+ S      AVL +    +N   
Sbjct: 377 DGRCKPN----ELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC 432

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+V+    F   +R             GF+ +  T N+M+SI GR + F     +L  M
Sbjct: 433 DLLVEAEVAFLELKRK------------GFSPDLSTLNAMLSIYGRRQMFTKTNEILNFM 480

Query: 272 GEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
            E G   S+ T+   M   + ++  +++  + + +     K    + N ++    R+   
Sbjct: 481 NESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRM 540

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           KEA  +F +++     P++ TY   +  +       +A  V   MI  G KP+   +N +
Sbjct: 541 KEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSV 600

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGP 414
           ++G  K   R DAI     +    P
Sbjct: 601 VDGYCKHNHRDDAIMFISSLHELDP 625


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 22/327 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  + +YN+++  L      +    +  EM   G    E T+ + ++A   +   +  
Sbjct: 761  GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDM 820

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
            + I E M+   +K+   T N ++  L +SK+  EA  L +  +   F+P   TY  LL G
Sbjct: 821  LKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDG 880

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +  N+ +A  +++EM++ G +P+   +NI+L G    G      +LFE M  +G +P+
Sbjct: 881  LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 940

Query: 418  VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYT++I   C                    + +   Y  LI G G   R++    L  
Sbjct: 941  IKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYN 1000

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +ME++G  P+  TYN+LI  +       EA ++Y+E++  G+KP + TYN +++ Y  +G
Sbjct: 1001 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            + E     +  MI  GC P+ ++Y  L
Sbjct: 1061 SPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 171/393 (43%), Gaps = 22/393 (5%)

Query: 201 VLDECGINL---SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           V+ E GI L   ++N ++  L +    R     +   A D  G     RTY+ +M   G+
Sbjct: 161 VMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAAD--GVVPTVRTYSVLMLAFGK 218

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            R  ET+V +L EM  +G+  ++ ++ I +     A   ++A  I   M +   K  V T
Sbjct: 219 RRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVT 278

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
              L++ L  +    +A+ +F K+K     P+  TY  LL       +      +WN + 
Sbjct: 279 NTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALK 338

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
             G+  +VV++   ++ L ++G+  +A+ +F+ MK KG  P   S               
Sbjct: 339 ADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYS--------------- 383

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  LI+GF    R +   +L   M   G  P+G T+   I          +A++ Y+ M 
Sbjct: 384 YNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMK 443

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P +   N ++    +TG   M ++V+ E+   G  PD+ +YT++I        + 
Sbjct: 444 SKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNAD 503

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           EA K   EM+E      VL  N     L +AGR
Sbjct: 504 EAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGR 536



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
            T + +L+ +G+S   ++   + +++ ++ +     TY  ++ G  + K L EA  ++ ++
Sbjct: 803  TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862

Query: 375  IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
            + +GF P    +  +L+GLLK G   DA  LF+ M   G               C+ N A
Sbjct: 863  MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG---------------CEPNCA 907

Query: 435  VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            +Y  L+ G+      + V +L + M E+G  PD  +Y  +I  +      ++ +  +K++
Sbjct: 908  IYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQL 967

Query: 495  VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
               G +P + TYN+++    ++G  E    ++++M ++G  P+  +Y  LI  L    ++
Sbjct: 968  TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA 1027

Query: 555  GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             EA K  EE+L KG K  V  YN      S +G
Sbjct: 1028 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 162/403 (40%), Gaps = 65/403 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ LGR  + + ++ +LE M       ++ T+   ++      E   A+ +   M
Sbjct: 558 TYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSM 617

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                   + + N ++  L +     EA  +F ++K    P+  T   +L  + R   + 
Sbjct: 618 TMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 366 EAGRVWNEMIDKGFKPDV-----VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           EA     E I    +PD        H++M EG+LK      +I+  E + + G   +   
Sbjct: 678 EALHTVREYI---LQPDSKVDRSSVHSLM-EGILKRDGTEKSIEFAENIASSGLLLDDLF 733

Query: 421 YTIMIWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEME 460
            + +I   CK   A+                    Y  LI G  +   +DI  +L  EM+
Sbjct: 734 LSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMK 793

Query: 461 ERGCPPDGLTYNALI----------KLMKIQ-------------------------KMPD 485
             GC PD  TY+ ++           ++KIQ                         KM D
Sbjct: 794 RLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLD 853

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ +Y +++  GF PT  TY  ++    + GN E    ++DEM+  GC P+   Y +L+
Sbjct: 854 EAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 913

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            G      + +  +  E M+E+GM   +  Y      L   GR
Sbjct: 914 NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGR 956



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 59/382 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G+  N  +Y + +  L +  + +  + + +EM +KG++  + ++   ++ F  A    +A
Sbjct: 341 GYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRA 400

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + +F  MN                                   H  TPN  T+ + +   
Sbjct: 401 LELFNHMNI----------------------------------HGPTPNGYTHVLFINYH 426

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +    ++A + +  M  KG  PDVVA N +L GL K G+   A ++F  +KA G SP+ 
Sbjct: 427 GKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDN 486

Query: 419 RSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT+MI                       C  +      LI       R +  + +  E
Sbjct: 487 ITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYE 546

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++E    P   TYN L+  +  +    E +++ + M  + F P I TYN ++    + G 
Sbjct: 547 LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGE 606

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                 +   M   GC PD +SY  ++ GL+ +DR  EA+    +M  K + AP  DY  
Sbjct: 607 VNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQM--KKVLAP--DYAT 662

Query: 579 FAADLSRAGRSYVLDELAQKMR 600
               L    RS ++ E    +R
Sbjct: 663 VCTILPSFVRSGLMKEALHTVR 684



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 133/312 (42%), Gaps = 32/312 (10%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK------HRFTPNLTTYTVL 354
           +F+LM +   KA V T   +   +G     + A +    +K      + +T N   Y ++
Sbjct: 123 VFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLV 182

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKA 411
             G+ R     EA  V+  M   G  P V  +++++   L  GKR DA   + L   M+A
Sbjct: 183 KSGFDR-----EAMDVYKAMAADGVVPTVRTYSVLM---LAFGKRRDAETVVGLLGEMEA 234

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +G  PNV SYTI I                  G   R++  Y +L++MEE GC PD +T 
Sbjct: 235 RGVRPNVYSYTICIRVL---------------GQAGRLEEAYRILRKMEEEGCKPDVVTN 279

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
             LI+++       +A  ++ +M  S  KP   TY  ++     +G+     ++W+ +  
Sbjct: 280 TVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKA 339

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
            G   +  SYT  +  L    R  EA    +EM +KG+      YN   +   +A R   
Sbjct: 340 DGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNR 399

Query: 592 LDELAQKMRFSG 603
             EL   M   G
Sbjct: 400 ALELFNHMNIHG 411



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 169/384 (44%), Gaps = 35/384 (9%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           +H  V DV + F   +R   +             N  T+ ++   +G      +    L 
Sbjct: 113 AHGRVGDVAQVFDLMQRQIIK------------ANVGTFCTVFGAVGVEGGLRSAPVALP 160

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M E G+ L+  T+   +     +   ++A+ +++ M        V T + L+   G+ +
Sbjct: 161 VMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRR 220

Query: 329 LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
             +    L  +++ R   PN+ +YT+ +    +   L EA R+  +M ++G KPDVV + 
Sbjct: 221 DAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNT 280

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           ++++ L   G+ +DA  +F  MKA    P+  +Y  ++ K C  +           G+ R
Sbjct: 281 VLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDK-CGDS-----------GDSR 328

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            +  +++ LK     G   + ++Y A +  +      DEA+ ++ EM + G  P  ++YN
Sbjct: 329 SVSEIWNALKA---DGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYN 385

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL---EEM 564
            ++  + +   +    ++++ M   G  P+  ++ + I       +SGE+ K L   E M
Sbjct: 386 SLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFIN---YHGKSGESLKALKRYELM 442

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR 588
             KG+   V+  N     L++ GR
Sbjct: 443 KSKGIVPDVVAGNAVLYGLAKTGR 466



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 170/422 (40%), Gaps = 59/422 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      +YNS++S   +A +F   + +   M   G   +  T  + +N    + E  KA
Sbjct: 376 GIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKA 435

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +  +ELM        V   N +L  L ++     A+ +F +LK    +P+  TYT+++  
Sbjct: 436 LKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKC 495

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +  N  EA +++ EMI+    PDV+A N +++ L K G+ ++A K+F  +K     P 
Sbjct: 496 CSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPT 555

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  ++    ++                    N   Y  ++        ++   D+L 
Sbjct: 556 DCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLY 615

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   GC PD  +YN ++  +  +   DEA  ++ +M +    P   T   I+ S+ ++G
Sbjct: 616 SMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQM-KKVLAPDYATVCTILPSFVRSG 674

Query: 518 NY-EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK------ 570
              E    V + +++     D +S   L+ G++ +D + ++ ++ E +   G+       
Sbjct: 675 LMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFL 734

Query: 571 APVL-----------------------------DYNKFAADLSRAGRSYVLDELAQKMRF 601
           +P++                              YN     L       + +EL  +M+ 
Sbjct: 735 SPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKR 794

Query: 602 SG 603
            G
Sbjct: 795 LG 796


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 165/363 (45%), Gaps = 17/363 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF     TY S+++ LG+    E + S+  EM ++GL  +++ +   ++A        +A
Sbjct: 269 GFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQA 328

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
           + I + M        + T N L+  L      ++A+  L + ++    PN  +YT L+ G
Sbjct: 329 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 388

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C    LM A  +  EM+ +G  PDVV    ++ GL+  GK S+A+ + E M  +   P+
Sbjct: 389 FCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 448

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V  Y ++I   CK               +  +    ++L+EM E+   PD   Y  LI  
Sbjct: 449 VNIYNVLISGLCK---------------KHMLPAAKNILEEMLEKNVQPDEFVYATLIDG 493

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               +   +A +I++ M   G +P I + N ++K Y Q G           M + GC PD
Sbjct: 494 FIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPD 553

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
           + +YT +I G   Q     A ++L +M+++  K  V+ Y+       + G +   + L  
Sbjct: 554 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFA 613

Query: 598 KMR 600
            M+
Sbjct: 614 NMQ 616



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 21/281 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N L++   R        LL  +++ + F P L TY  L+    +  +L + G ++ EM  
Sbjct: 243 NVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRK 302

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----- 431
           +G  P+V  +N +++ L K    + A+ + + M A G  P++ ++  +I   C +     
Sbjct: 303 RGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRK 362

Query: 432 ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                          N   YT LI GF  R  +    DLL EM  RG  PD +T+ ALI 
Sbjct: 363 AEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIH 422

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            + +     EA+ + ++M      P ++ YN+++    +       + + +EM+ +   P
Sbjct: 423 GLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQP 482

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           D+  Y  LI G I  +  G+A K  E M  KG++  ++  N
Sbjct: 483 DEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCN 523



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 16/285 (5%)

Query: 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           ++E MG      + TF   ++    A +  +A+ + E M + +    V+  N L+  L +
Sbjct: 402 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 461

Query: 327 SK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
              LP    +L + L+    P+   Y  L+ G+ R +NL +A +++  M  KG +PD+V+
Sbjct: 462 KHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVS 521

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
            N M++G  + G  S+AI     M+  G               C  +   YT +I+G+  
Sbjct: 522 CNAMIKGYCQFGMMSEAILCMSNMRKVG---------------CIPDEFTYTTVISGYAK 566

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           +  ++     L +M +R C P+ +TY++LI         D A  ++  M      P + T
Sbjct: 567 QGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVT 626

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           Y +++ S F+          ++ M+   C P+D +   L+ GL S
Sbjct: 627 YTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTS 671



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 19/257 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++  Y VL+ G+CR  ++     +  EM  KGF P +V +  ++  L K G       L
Sbjct: 237 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSL 296

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M+ +G SPNV+ Y  +I   CK  +A    +I               LK+M   GC 
Sbjct: 297 FLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVI---------------LKQMFASGCD 341

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +T+N LI  +  +    +A    +E +R    P   +Y  ++  +   G       +
Sbjct: 342 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 401

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             EM+ RG  PD  ++  LI GL+   +  EA    E+M E+ +   V  YN   + L +
Sbjct: 402 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 461

Query: 586 ----AGRSYVLDELAQK 598
                    +L+E+ +K
Sbjct: 462 KHMLPAAKNILEEMLEK 478



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 19/304 (6%)

Query: 288 AFAAAKERKKAVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRF 344
           A+A A    KA  + E L  +Y     V   N LL+ L   +   +A+ L+D++  +   
Sbjct: 142 AYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSG 201

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
             N +T  VL+ G C    + E  ++       G  P VV +N++++G  + G     + 
Sbjct: 202 ADNYST-CVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLL 260

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L   M+AKG  P + +Y  +I            CL    G +  ++ +  L  EM +RG 
Sbjct: 261 LLGEMEAKGFLPTLVTYGSLI-----------NCL----GKKGDLEKIGSLFLEMRKRGL 305

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            P+   YN++I  +       +A+ I K+M  SG  P I T+N ++      G+      
Sbjct: 306 SPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEH 365

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
              E IRR   P+  SYT LI G   +     A   L EM+ +G    V+ +      L 
Sbjct: 366 FLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLV 425

Query: 585 RAGR 588
            AG+
Sbjct: 426 VAGK 429



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 15/238 (6%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A ++++EM+ +    D  +  +++ GL   G+  + +KL E     G  P+V  Y ++I
Sbjct: 187 DARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLI 246

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
             +C+               R  M     LL EME +G  P  +TY +LI  +  +   +
Sbjct: 247 DGYCR---------------RGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLE 291

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +   ++ EM + G  P +  YN ++ +  +  +      +  +M   GC PD  ++  LI
Sbjct: 292 KIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLI 351

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            GL  +    +A  +L E + + +    L Y          G      +L  +M   G
Sbjct: 352 TGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRG 409



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 1/171 (0%)

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
           A    L+  + +   +    D+ + + E+ G  P+    N L+KL+  Q+  D+A ++Y 
Sbjct: 134 ACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYD 193

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM+        ++  ++++     G  E G K+ +     GC P    Y VLI G   + 
Sbjct: 194 EMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRG 253

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             G     L EM  KG    ++ Y      L + G    +  L  +MR  G
Sbjct: 254 DMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRG 304


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 22/327 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  + +YN+++  L      +    +  EM   G    E T+ + ++A   +   +  
Sbjct: 761  GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDM 820

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
            + I E M+   +K+   T N ++  L +SK+  EA  L +  +   F+P   TY  LL G
Sbjct: 821  LKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDG 880

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +  N+ +A  +++EM++ G +P+   +NI+L G    G      +LFE M  +G +P+
Sbjct: 881  LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 940

Query: 418  VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYT++I   C                    + +   Y  LI G G   R++    L  
Sbjct: 941  IKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYN 1000

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +ME++G  P+  TYN+LI  +       EA ++Y+E++  G+KP + TYN +++ Y  +G
Sbjct: 1001 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            + E     +  MI  GC P+ ++Y  L
Sbjct: 1061 SPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 171/393 (43%), Gaps = 22/393 (5%)

Query: 201 VLDECGINL---SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           V+ E GI L   ++N ++  L +    R     +   A D  G     RTY+ +M   G+
Sbjct: 161 VMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAAD--GVVPTVRTYSVLMLAFGK 218

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            R  ET+V +L EM  +G+  ++ ++ I +     A   ++A  I   M +   K  V T
Sbjct: 219 RRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVT 278

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
              L++ L  +    +A+ +F K+K     P+  TY  LL       +      +WN + 
Sbjct: 279 NTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALK 338

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
             G+  +VV++   ++ L ++G+  +A+ +F+ MK KG  P   S               
Sbjct: 339 ADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYS--------------- 383

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  LI+GF    R +   +L   M   G  P+G T+   I          +A++ Y+ M 
Sbjct: 384 YNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMK 443

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P +   N ++    +TG   M ++V+ E+   G  PD+ +YT++I        + 
Sbjct: 444 SKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNAD 503

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           EA K   EM+E      VL  N     L +AGR
Sbjct: 504 EAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGR 536



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
            T + +L+ +G+S   ++   + +++ ++ +     TY  ++ G  + K L EA  ++ ++
Sbjct: 803  TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862

Query: 375  IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
            + +GF P    +  +L+GLLK G   DA  LF+ M   G               C+ N A
Sbjct: 863  MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG---------------CEPNCA 907

Query: 435  VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            +Y  L+ G+      + V +L + M E+G  PD  +Y  +I  +      ++ +  +K++
Sbjct: 908  IYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQL 967

Query: 495  VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
               G +P + TYN+++    ++G  E    ++++M ++G  P+  +Y  LI  L    ++
Sbjct: 968  TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA 1027

Query: 555  GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             EA K  EE+L KG K  V  YN      S +G
Sbjct: 1028 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSG 1060



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 163/403 (40%), Gaps = 65/403 (16%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ LGR  + + ++ +LE M       ++ T+   ++      E   A+ +   M
Sbjct: 558 TYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSM 617

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                   + + N ++  L +     EA  +F ++K    P+  T   +L  + R   + 
Sbjct: 618 TMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 366 EAGRVWNEMIDKGFKPDV-----VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           EA     E I    +PD        H++M EG+LK      +I+  E + + G   +   
Sbjct: 678 EALHTVREYI---LQPDSKVDRSSVHSLM-EGILKRDGTEKSIEFAENIASSGLLLDDLF 733

Query: 421 YTIMIWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEME 460
            + +I  FCK   A+                    Y  LI G  +   +DI  +L  EM+
Sbjct: 734 LSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMK 793

Query: 461 ERGCPPDGLTYNALI----------KLMKIQ-------------------------KMPD 485
             GC PD  TY+ ++           ++KIQ                         KM D
Sbjct: 794 RLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLD 853

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ +Y +++  GF PT  TY  ++    + GN E    ++DEM+  GC P+   Y +L+
Sbjct: 854 EAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 913

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            G      + +  +  E M+E+GM   +  Y      L   GR
Sbjct: 914 NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGR 956



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 154/382 (40%), Gaps = 59/382 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G+  N  +Y + +  L +  + +  + + +EM +KG++  + ++   ++ F  A    +A
Sbjct: 341 GYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRA 400

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + +F  MN                                   H  TPN  T+ + +   
Sbjct: 401 LELFNHMNI----------------------------------HGPTPNGYTHVLFINYH 426

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +    ++A + +  M  KG  PDVVA N +L GL K G+   A ++F  +KA G SP+ 
Sbjct: 427 GKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDN 486

Query: 419 RSYTIMI--------------------WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +YT+MI                       C  +      LI       R +  + +  E
Sbjct: 487 ITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYE 546

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ++E    P   TYN L+  +  +    E +++ + M  + F P I TYN ++    + G 
Sbjct: 547 LKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGE 606

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                 +   M   GC PD +SY  ++ GL+ + R  EA+    +M  K + AP  DY  
Sbjct: 607 VNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM--KKVLAP--DYAT 662

Query: 579 FAADLSRAGRSYVLDELAQKMR 600
               L    RS ++ E    +R
Sbjct: 663 VCTILPSFVRSGLMKEALHTVR 684



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 133/312 (42%), Gaps = 32/312 (10%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK------HRFTPNLTTYTVL 354
           +F+LM +   KA V T   +   +G     + A +    +K      + +T N   Y ++
Sbjct: 123 VFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLV 182

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKA 411
             G+ R     EA  V+  M   G  P V  +++++   L  GKR DA   + L   M+A
Sbjct: 183 KSGFDR-----EAMDVYKAMAADGVVPTVRTYSVLM---LAFGKRRDAETVVGLLGEMEA 234

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +G  PNV SYTI I                  G   R++  Y +L++MEE GC PD +T 
Sbjct: 235 RGVRPNVYSYTICIRVL---------------GQAGRLEEAYRILRKMEEEGCKPDVVTN 279

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
             LI+++       +A  ++ +M  S  KP   TY  ++     +G+     ++W+ +  
Sbjct: 280 TVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKA 339

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
            G   +  SYT  +  L    R  EA    +EM +KG+      YN   +   +A R   
Sbjct: 340 DGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNR 399

Query: 592 LDELAQKMRFSG 603
             EL   M   G
Sbjct: 400 ALELFNHMNIHG 411



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 169/384 (44%), Gaps = 35/384 (9%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           +H  V DV + F   +R   +             N  T+ ++   +G      +    L 
Sbjct: 113 AHGRVGDVAQVFDLMQRQIIK------------ANVGTFCTVFGAVGVEGGLRSAPVALP 160

Query: 270 EMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M E G+ L+  T+   +     +   ++A+ +++ M        V T + L+   G+ +
Sbjct: 161 VMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRR 220

Query: 329 LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
             +    L  +++ R   PN+ +YT+ +    +   L EA R+  +M ++G KPDVV + 
Sbjct: 221 DAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNT 280

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           ++++ L   G+ +DA  +F  MKA    P+  +Y  ++ K C  +           G+ R
Sbjct: 281 VLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDK-CGDS-----------GDSR 328

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            +  +++ LK     G   + ++Y A +  +      DEA+ ++ EM + G  P  ++YN
Sbjct: 329 SVSEIWNALKA---DGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYN 385

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL---EEM 564
            ++  + +   +    ++++ M   G  P+  ++ + I       +SGE+ K L   E M
Sbjct: 386 SLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFIN---YHGKSGESLKALKRYELM 442

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR 588
             KG+   V+  N     L++ GR
Sbjct: 443 KSKGIVPDVVAGNAVLYGLAKTGR 466



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 170/422 (40%), Gaps = 59/422 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      +YNS++S   +A +F   + +   M   G   +  T  + +N    + E  KA
Sbjct: 376 GIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKA 435

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +  +ELM        V   N +L  L ++     A+ +F +LK    +P+  TYT+++  
Sbjct: 436 LKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKC 495

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +  N  EA +++ EMI+    PDV+A N +++ L K G+ ++A K+F  +K     P 
Sbjct: 496 CSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPT 555

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  ++    ++                    N   Y  ++        ++   D+L 
Sbjct: 556 DCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLY 615

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   GC PD  +YN ++  +  +   DEA  ++ +M +    P   T   I+ S+ ++G
Sbjct: 616 SMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM-KKVLAPDYATVCTILPSFVRSG 674

Query: 518 NY-EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK------ 570
              E    V + +++     D +S   L+ G++ +D + ++ ++ E +   G+       
Sbjct: 675 LMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFL 734

Query: 571 APVL-----------------------------DYNKFAADLSRAGRSYVLDELAQKMRF 601
           +P++                              YN     L       + +EL  +M+ 
Sbjct: 735 SPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKR 794

Query: 602 SG 603
            G
Sbjct: 795 LG 796


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 175/383 (45%), Gaps = 26/383 (6%)

Query: 197 NMEAVLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRT 247
           N ++ LD+  + +S  LV +VL         +      + A++FF W G +  F H +  
Sbjct: 95  NTKSALDDLNVTISGLLVREVLVGILRTLSYDNKTRCAKLAYKFFVWFGGQENFRHTANC 154

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           Y+ +M I     +++ M  +++EM + G  +   TF + +     A   +  V  F    
Sbjct: 155 YHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSK 214

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLM 365
            + ++    + N +L +L   K  K    ++++ L+  F+P++ TY +++    R+    
Sbjct: 215 TFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTD 274

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              R+ +EM+  GF PD+  +NI+L  L    K   A+ L   M+  G  P V  +T   
Sbjct: 275 RLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTT-- 332

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        L+ G     +++     + EM + GC PD + Y  +I         +
Sbjct: 333 -------------LVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELE 379

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A  ++KEM   G  P + TYN +++ +   G ++    +  EM  RGC P+   Y+ L+
Sbjct: 380 KAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLV 439

Query: 546 GGLISQDRSGEAYKYLEEMLEKG 568
             L +  +  EA++ +++M+EKG
Sbjct: 440 NNLRNAGKVLEAHEIVKDMVEKG 462



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 50/322 (15%)

Query: 173 KSTADPREIERVCKVIDELFSLDRNMEAVLDECGINL------SHNLVVDVLERFRHAR- 225
           K  A+  E + +C++IDE+        A    C  NL         L  DV+E+F  ++ 
Sbjct: 160 KIFAECGEYKAMCRLIDEMIKDGYPTTA----CTFNLLICTCGEAGLARDVVEQFIKSKT 215

Query: 226 ---RP----------------AFRFFCWAGDK---PGFAHNSRTYNSMMSILGRARQFET 263
              RP                 ++   W  ++    GF+ +  TYN +M    R  + + 
Sbjct: 216 FNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDR 275

Query: 264 MVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
           +  +L+EM + G    + T+ I ++  A   +   A+ +   M +   + GV     L++
Sbjct: 276 LYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVD 335

Query: 323 NLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
            L R+   +  +   D++ K   TP++  YTV++ G+     L +A  ++ EM +KG  P
Sbjct: 336 GLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 395

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           +V  +N M+ G    GK  +A  L + M+++G +PN                 VY+ L+ 
Sbjct: 396 NVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNF---------------VVYSTLVN 440

Query: 442 GFGNRRRMDIVYDLLKEMEERG 463
              N  ++   ++++K+M E+G
Sbjct: 441 NLRNAGKVLEAHEIVKDMVEKG 462


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 21/395 (5%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+ +++  L   R  R      F    D  G + N  TY  ++  L +  +      +L+
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHD--GCSLNLHTYTLLIKGLCKEGRIHDARGLLD 308

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           EM  +G++ S+ T+   ++ +  +   K A+ I  LM +        T N L+  L   K
Sbjct: 309 EMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGK 368

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L +  +LL   +   FTP + T+T L+ G+C+ + + +A RV + MI    K D+ A+ +
Sbjct: 369 LDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGV 428

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           ++  L+K  +  +A +    M A G +PNV +YT +I  +CK                  
Sbjct: 429 LINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGM--------------- 473

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +    ++ K ME  GC P+  TY +LI  +   K   +A+ +  +M   G  P + TY  
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTT 533

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++   +   ++   ++++ M + G  PD+ +Y VL   L    R+ EAY +L   + KG
Sbjct: 534 LIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VRKG 590

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +    + Y       S+AG +     L +KM   G
Sbjct: 591 VVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 19/359 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF     T+ ++++   +A + +  + +   M      L ++ + + +N        K+A
Sbjct: 383 GFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEA 442

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
                 M        V T   +++   +  +   A  +F  ++H    PN  TY  L+ G
Sbjct: 443 KETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYG 502

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             + K L +A  +  +M + G  P V+ +  +++G  K  +  +A +LFE+M+  G +P+
Sbjct: 503 LIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 562

Query: 418 VRSYTIMIWKFCKQNAA-----------------VYTCLITGFGNRRRMDIVYDLLKEME 460
            ++Y ++    CK   A                  YT L+ GF      D    L+++M 
Sbjct: 563 EQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMV 622

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             GC  D  TY+ L++ +  QK  +EA+ I  +M  SG K  I  Y +I+    + G ++
Sbjct: 623 NEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHD 682

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             + +++EMI  G  P   +YTV I       R  EA   + EM   G+   V+ YN F
Sbjct: 683 HAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIF 741



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 155/365 (42%), Gaps = 24/365 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI-- 301
           + + YN  +  L R    E M  +   + ++GLL      +  N    A  +K ++AI  
Sbjct: 143 SPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLP---DTVTYNTMIMAYCKKGSLAIAH 199

Query: 302 --FELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             F L+ +   +    T N LL    R S L K   LL          N  +YT+L+ G 
Sbjct: 200 RYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGL 259

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C  + + EA  +   M+  G   ++  + ++++GL K G+  DA  L + M  +G  P+V
Sbjct: 260 CEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSV 319

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y  MI  +CK                 RM     +   ME+ GC PD  TYN+LI  +
Sbjct: 320 WTYNAMIDGYCKSG---------------RMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              K+ DEA  +    +  GF PT+ T+  ++  Y +    +   +V   MI   C  D 
Sbjct: 365 CGGKL-DEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDL 423

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y VLI  LI + R  EA + L EM   G+   V+ Y        + G      E+ + 
Sbjct: 424 QAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKL 483

Query: 599 MRFSG 603
           M   G
Sbjct: 484 MEHEG 488



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 146/343 (42%), Gaps = 25/343 (7%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           + Y  ++++L +  + +     L EM   GL  ++ T+   ++ +        A+ +F+L
Sbjct: 424 QAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKL 483

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           M          T   L+  L + K   +A  L  K++    TP + TYT L+ G C+   
Sbjct: 484 MEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE 543

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
              A R++  M   G  PD  A+N++ + L K G+  +A   +  +  KG      +YT 
Sbjct: 544 FDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTS 600

Query: 424 MIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++  F                    CK +   Y+ L+     +++++    +L +M   G
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              + + Y  +I  M  +   D A  ++ EM+ SG KP+  TY + + SY + G  E   
Sbjct: 661 VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAE 720

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            +  EM R G  PD  +Y + I G         A+  L+ M++
Sbjct: 721 HLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVD 763



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 158/371 (42%), Gaps = 15/371 (4%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           ++N++ D L +   A   A+ F      + G      TY S++    +A   +    ++E
Sbjct: 565 AYNVLTDALCKSGRAEE-AYSFLV----RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIE 619

Query: 270 EMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           +M  +G  + + T+ + + A    K+  +A++I + M     K  +     ++  + +  
Sbjct: 620 KMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEG 679

Query: 329 LPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
               A+ LF+++      P+ TTYTV +  +C++  + EA  +  EM   G  PDVV +N
Sbjct: 680 KHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYN 739

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA-VYTCLITGFGNR 446
           I + G   +G    A    + M      PN  +Y +++  F K +    +    +G  N 
Sbjct: 740 IFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNW 799

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +++V+ LL+ M + G  P  +TY+++I         +EA  +   M+     P    Y
Sbjct: 800 IELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIY 859

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            M++K       +        +MI  G  P   SY  LI GL  +     A     ++L 
Sbjct: 860 TMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLL- 918

Query: 567 KGMKAPVLDYN 577
            GM     DYN
Sbjct: 919 -GM-----DYN 923



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 39/381 (10%)

Query: 217 VLERFRHARRP-----AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           V + FR    P     A  FF     +PGF H + ++ +++ +L R R            
Sbjct: 53  VADLFRAPVSPLDPATALAFFECVARRPGFRHTAASHAALLQLLARRRAPANY------- 105

Query: 272 GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL---LENLGRSK 328
            +K +LSM      ++    A++ ++AV   + + +   K  V +  C    L +L R  
Sbjct: 106 -DKLVLSM------ISCSGTAEDVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFD 158

Query: 329 LPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           + +    L+  L +    P+  TY  ++  +C+  +L  A R +  + + G + D    N
Sbjct: 159 MTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCN 218

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            +L G  +      A  L  +M   G   N  SYTI+I   C+               R 
Sbjct: 219 ALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCV-----------RE 267

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
            + +V+ ++ +    GC  +  TY  LIK +  +    +A  +  EM   G  P++ TYN
Sbjct: 268 ALVLVFMMVHD----GCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYN 323

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++  Y ++G  +    +   M + GC PDD +Y  LI GL    +  EA + L   + +
Sbjct: 324 AMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIAR 382

Query: 568 GMKAPVLDYNKFAADLSRAGR 588
           G    V+ +        +A R
Sbjct: 383 GFTPTVITFTNLINGYCKAER 403


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 171/364 (46%), Gaps = 21/364 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + N   Y +++    +    E      ++MGE GL++ + TF + +N       +K  
Sbjct: 192 GLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDG 251

Query: 299 VAIFELMNKYKFKAGVDTINCLL-ENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
             +FE M        + T NCL+ E  G  K+ + A  LFD+++ R    N+ TY  L+G
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICR-AFDLFDEMRERGVEANVVTYNTLIG 310

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR + + EA ++ ++M      P+++ +N ++ G   +G    A  L + +K+ G SP
Sbjct: 311 GMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSP 370

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI- 475
           ++ +Y I+I  + K             GN +    V DL +EME RG  P  +T   LI 
Sbjct: 371 SLVTYNILIEGYSKA------------GNWKG---VADLAREMEGRGISPSKVTCTVLID 415

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
             +++Q+M ++A +IY  M + G  P ++ Y +++      GN +   K++  M      
Sbjct: 416 AYVRLQEM-EKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVE 474

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P D  Y  +I G   +D S  A + L EM  KG+   V  Y+     L + G+    + L
Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVL 534

Query: 596 AQKM 599
             KM
Sbjct: 535 LDKM 538



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 160/343 (46%), Gaps = 17/343 (4%)

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNA 288
           R F     + G   N  T+  +++ L +    +    + E+M   GL  ++ T+   MN 
Sbjct: 217 RLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNE 276

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPN 347
           +    +  +A  +F+ M +   +A V T N L+  + R +   EA+ L D++K    +PN
Sbjct: 277 YCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPN 336

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           L TY  L+GG+C V NL +A  + +++   G  P +V +NI++EG  K G       L  
Sbjct: 337 LITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAR 396

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
            M+ +G SP+  + T+               LI  +   + M+  + +   ME+ G  PD
Sbjct: 397 EMEGRGISPSKVTCTV---------------LIDAYVRLQEMEKAFQIYSSMEKFGLVPD 441

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
              Y  LI  + ++    E+ ++++ M     +P+   YN ++  Y +  N     ++  
Sbjct: 442 VYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLR 501

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           EM  +G  P+  SY+ +IG L    +  EA   L++M+E  +K
Sbjct: 502 EMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLK 544



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 141/310 (45%), Gaps = 23/310 (7%)

Query: 261 FETMVSMLEEMGEKGLLSMET---FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
           F T+ S+L  + +    SM T   ++  +NA   ++   KA+  F  M         +  
Sbjct: 72  FFTVPSLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIF 131

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N LL +L RS   ++A L F++LK R   ++ ++ +++ G C   NL ++ ++   + D 
Sbjct: 132 NSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDM 191

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G  P+VV +  +++G  K G    A   F+ M   G   N  ++T++I    K+      
Sbjct: 192 GLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDG 251

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         N   Y CL+  +    ++   +DL  EM ERG   + +TYN LI  
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGG 311

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           M  ++   EA ++  +M ++   P + TYN ++  +   GN +    + D++   G  P 
Sbjct: 312 MCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPS 371

Query: 538 DNSYTVLIGG 547
             +Y +LI G
Sbjct: 372 LVTYNILIEG 381



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 159/398 (39%), Gaps = 24/398 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A  FF    DK G       +NS++  L R+  FE       E+ E+    + +F I + 
Sbjct: 112 ALIFFNEMVDK-GLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIK 170

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
                    K+  +  L+        V     L++   ++   + A+L FDK+       
Sbjct: 171 GCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVA 230

Query: 347 NLTTYTVLLGGWCRVKNLMEAG-RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           N  T+TVL+ G  + K L + G  ++ +M   G  P++  +N ++      GK   A  L
Sbjct: 231 NQYTFTVLINGLFK-KGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDL 289

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
           F+ M+ +G   NV +Y  +I   C++                    N   Y  LI GF +
Sbjct: 290 FDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCD 349

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              +D    LL +++  G  P  +TYN LI+             + +EM   G  P+  T
Sbjct: 350 VGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVT 409

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
             +++ +Y +    E   +++  M + G  PD   Y VLI GL  +    E+ K    M 
Sbjct: 410 CTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMG 469

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           E  ++   + YN       +   SY    L ++M   G
Sbjct: 470 EMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKG 507



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 25/277 (9%)

Query: 326 RSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           +S+L  +A + F+++  +   F PN+  +  LLG   R     +A   +NE+ ++  K D
Sbjct: 105 KSQLLDKALIFFNEMVDKGLVFRPNI--FNSLLGSLVRSNCFEKAWLFFNELKER-VKFD 161

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V +  IM++G  + G    + +L  +++  G SPNV  YT +I   CK            
Sbjct: 162 VYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKN----------- 210

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
            G+  R  + +D   +M E G   +  T+  LI  +  + +  +   ++++M  +G  P 
Sbjct: 211 -GDIERARLFFD---KMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPN 266

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           ++TYN +M  Y   G       ++DEM  RG   +  +Y  LIGG+  ++R  EA K ++
Sbjct: 267 LYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVD 326

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDEL 595
           +M +  +   ++ YN         G     S +LD+L
Sbjct: 327 QMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQL 363



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 104/247 (42%), Gaps = 7/247 (2%)

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL-FEVMKAKGPSPNVRSYTI 423
           ++A  ++N  I +GF+    + + +L+ LL   K   A  L  +++  K  SP     ++
Sbjct: 19  LQALSLFNSSIQQGFQHTHHSISFLLQHLLDHHKLPHAQSLILQILSNKISSPFFTVPSL 78

Query: 424 MIWKFCKQN-----AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
           +      QN     A +Y  +I      + +D       EM ++G       +N+L+  +
Sbjct: 79  LHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSL 138

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                 ++A   + E+ +   K  ++++ +++K   + GN +   ++   +   G  P+ 
Sbjct: 139 VRSNCFEKAWLFFNEL-KERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNV 197

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
             YT LI G         A  + ++M E G+ A    +      L + G      +L +K
Sbjct: 198 VIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEK 257

Query: 599 MRFSGKF 605
           M+ +G F
Sbjct: 258 MKINGLF 264


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 171/362 (47%), Gaps = 25/362 (6%)

Query: 247 TYNSMMS-ILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFE 303
            YN +MS ++GR R  + +V++ E   +  L S +  +F + +       + +KA+ + E
Sbjct: 215 AYNKLMSSLIGRGRVHD-VVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVE 273

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRV 361
            MN++       T N +++ L R+        +  +L+      PN+ T+T ++ G+C+ 
Sbjct: 274 RMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 333

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L +A  V+N+M+  G  P+ V +N+++ G  K+G    A+++++ M      P+V ++
Sbjct: 334 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 393

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           + +I  +C+                 ++D    +  +M +    P+  T++ +I  +  Q
Sbjct: 394 SSLIDGYCRCG---------------QLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 438

Query: 482 KMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
              DEA+R+  E+ +R    P    YN ++    + G  +    +   M  +GC PD  +
Sbjct: 439 NRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 498

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           YT+LI G   + R  EA  +  EM+E G     +  N F + L +AG     +E+   MR
Sbjct: 499 YTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP---NEVDHVMR 555

Query: 601 FS 602
            +
Sbjct: 556 LA 557



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 131/286 (45%), Gaps = 25/286 (8%)

Query: 208 NLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFA-HNSRTYNSMMSILGRARQFETM 264
            ++HN++VD L R     R     R       + G    N  T+ S++S   +A + E  
Sbjct: 284 TVTHNIIVDGLCRTNEVSRGHEVLRRL----QRDGVCMPNVVTFTSVISGYCKAGKLEDA 339

Query: 265 VSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           +++  +M   G++ +  T+ + +N +    +   AV +++ M + +    V T + L++ 
Sbjct: 340 MAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDG 399

Query: 324 LGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM-IDKGFKP 381
             R  +L    ++  D  +HR  PN+ T+++++   C+     EA R+ NE+ +     P
Sbjct: 400 YCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAP 459

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
               +N +++ L K GK  +A  + + M+ KG  P+  +YTI+I  +C ++         
Sbjct: 460 QAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS--------- 510

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
                 R+        EM E GC PD +T N  I  +    MP+E 
Sbjct: 511 ------RISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEV 550



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 23/230 (10%)

Query: 393 LLKIGKRSDAIKLFEVMKAK-GPSPNVRSYTIMIWKF--------------------CKQ 431
           L + G+++DA++LF+ M    G SP+ R  + ++                       C+ 
Sbjct: 152 LCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRV 211

Query: 432 NAAVYTCLITGFGNRRRM-DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            A  Y  L++    R R+ D+V    + +++R   PD  ++N +IK +       +A+ +
Sbjct: 212 EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALEL 271

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLI 549
            + M   G  P   T+N+I+    +T     G +V   + R G C P+  ++T +I G  
Sbjct: 272 VERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYC 331

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
              +  +A     +M+  G+    + YN       + G      E+ Q+M
Sbjct: 332 KAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 381


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 20/264 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++   T L+ G+C++    +A R+   + D G  PDV+ +N+++ G+   G+  DA KL
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKL 176

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGN 445
              M  +G SP+V ++ I+I   C++                    N+  Y  L+ GF  
Sbjct: 177 LADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCK 236

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            ++M+   + L +M  RGC PD +TYN L+  +      D AV +  ++   G  P + T
Sbjct: 237 EKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLIT 296

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++    + G  +   K+ DEM  +G  PD  +Y+ L+GGL  + +  EA K+  ++ 
Sbjct: 297 YNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLE 356

Query: 566 EKGMKAPVLDYNKFAADLSRAGRS 589
             G+K   + YN     L +A ++
Sbjct: 357 VLGVKPNAITYNAIMLGLCKARKT 380



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 22/346 (6%)

Query: 228 AFRFF---CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI 284
            FRF     + GD P     +        I G+ R+   ++ ++E+ G   +  + T+ +
Sbjct: 103 GFRFLESMVYRGDIPDIIPCTSLIRGFCKI-GKTRKATRIMEIIEDSG--AVPDVITYNV 159

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHR 343
            ++   +      A  +   M +      V T N L+  L R  L   A  + +K+ KH 
Sbjct: 160 LISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHG 219

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
            TPN  +Y  LL G+C+ K +  A     +M  +G  PD+V +N +L  L K GK   A+
Sbjct: 220 CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV 279

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +L   + +KG SP      ++I          Y  +I G     + D    LL EM  +G
Sbjct: 280 ELLNQLSSKGCSP------VLI---------TYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD +TY++L+  +  +   DEA++ + ++   G KP   TYN IM    +    +   
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                M++RGC P + SYT+LI GL  +  + EA + L E+  +G+
Sbjct: 385 DFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 20/279 (7%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ TY VL+ G C     M+A ++  +M+ +G  P VV  NI++  L + G    AI 
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           + E M   G +PN  SY  ++  FCK+                    +   Y  L+T   
Sbjct: 211 VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALC 270

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              ++D   +LL ++  +GC P  +TYN +I  +      D+A ++  EM   G KP I 
Sbjct: 271 KDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDII 330

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY+ ++    + G  +   K + ++   G  P+  +Y  ++ GL    ++  A  +L  M
Sbjct: 331 TYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYM 390

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +++G K     Y      L+  G +    EL  ++   G
Sbjct: 391 VQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRG 429



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           L    R   L E  R    M+ +G  PD++    ++ G  KIGK   A ++ E+++  G 
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P+V +Y ++I   C           TG    R MD    LL +M  RGC P  +T+N L
Sbjct: 151 VPDVITYNVLISGMCS----------TG----RWMD-AEKLLADMVRRGCSPSVVTFNIL 195

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +  + +   A+ + ++M + G  P   +YN ++  + +    E   +   +M  RGC
Sbjct: 196 INFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGC 255

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            PD  +Y  L+  L    +   A + L ++  KG    ++ YN     LS+ G++    +
Sbjct: 256 YPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAK 315

Query: 595 LAQKMRFSG 603
           L  +MR  G
Sbjct: 316 LLDEMRAKG 324


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 23/379 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKIT 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K      V T N LL  L       EA  LF ++ +    PN+ T+T L+ G CR   ++
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIM 424
           EA  + + M++ G +P  + +  +++G+ KIG    A+ L   M+      PNV  Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAI 261

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   Y  +I GF +  R      LL+EM ER  
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYNALI     +    EA  +Y EM+  G  P   TY+ ++  + +    +    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M  +GC P+  ++  LI G     R  +  + L EM E G+ A    YN       
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G      +L Q+M  SG
Sbjct: 442 LVGDLNAALDLLQEMISSG 460



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 181/414 (43%), Gaps = 69/414 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLL 242

Query: 303 ELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
             M +       V   + ++++L +     +AQ LF +++ +   P+L TY  ++ G+C 
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A ++  EM+++   PDVV +N ++   +K GK  +A +L++ M  +G  PN  +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 421 YTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+ MI  FCKQN                       +  LI G+   +R+D   +LL EM 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 461 ERGCPPDGLTYNALI-----------KLMKIQKM------PD------------------ 485
           E G   D  TYN LI            L  +Q+M      PD                  
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 486 EAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +A+ ++K M +S           G +P + TYN+++      G +    ++++EM  RG 
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 542

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y+ +I GL  Q R  EA +  + M  K     V+ +        +AGR
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 596



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F LM
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N L++   G  ++    +LL +  +     + TTY  L+ G+  V +L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----------G 413
             A  +  EMI  G  PD+V  + +L+GL   GK  DA+++F+VM+             G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V++Y I               LI+G  N  +     +L +EM  RG  PD +TY++
Sbjct: 507 VEPDVQTYNI---------------LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M    F P + T+  ++  Y + G  + G +++ EM RRG
Sbjct: 552 MIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +Y  LI G         A    +EM+  G+
Sbjct: 612 IVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/456 (21%), Positives = 193/456 (42%), Gaps = 43/456 (9%)

Query: 168 TSVSYKSTADPREIERVCKVIDELFSLD--RNMEAVLDECGINLSHNLVVDVL-ERFRHA 224
           T ++Y +  D      +CK+ D + +LD  R ME +       + ++ ++D L +  RH+
Sbjct: 218 TQITYGTIVD-----GMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 225 RRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFK 283
              A   F    +K G   +  TYNSM+     + ++     +L+EM E+ +   + T+ 
Sbjct: 273 D--AQNLFTEMQEK-GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343
             +NAF    +  +A  +++ M          T + +++   +      A+ +F  +  +
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 344 -FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
             +PNL T+  L+ G+C  K + +   + +EM + G   D   +N ++ G   +G  + A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC--LITGFGNRRRMDIVYDLLKEME 460
           + L + M + G  P++                  TC  L+ G  +  ++    ++ K M+
Sbjct: 450 LDLLQEMISSGLCPDI-----------------VTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 461 E-----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           +            G  PD  TYN LI  +  +    EA  +Y+EM   G  P   TY+ +
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +    +    +   +++D M  +   P+  ++T LI G     R  +  +   EM  +G+
Sbjct: 553 IDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 612

Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            A  + Y        + G      ++ Q+M  SG +
Sbjct: 613 VANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 122/302 (40%), Gaps = 56/302 (18%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G+  +K L +A  ++++M+     P VV    ++  ++++ +    I L++ M+ K 
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
              ++ S+TI+I  FC                      +   +  L+ G     R+    
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT----------- 502
           +L  +M E  C P+ +T+  L+  +  +    EAV +   M+  G +PT           
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 503 -------------------------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                                    +  Y+ I+ S  + G +   + ++ EM  +G  PD
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y  +I G  S  R  +A + L+EMLE+ +   V+ YN       + G+ +  +EL  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 598 KM 599
           +M
Sbjct: 350 EM 351



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 51/238 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN+++            + +L+EM   GL   + T    ++      + K A
Sbjct: 425 GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484

Query: 299 VAIFELMNKYK-----------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---- 343
           + +F++M K K            +  V T N L+  L       EA+ L++++ HR    
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544

Query: 344 --------------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
                                           F+PN+ T+T L+ G+C+   + +   ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 604

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
            EM  +G   + + +  ++ G  K+G  + A+ +F+ M + G  P+   +R+    +W
Sbjct: 605 CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   + +TYN ++S L    +F     + EEM  +G++    T+   ++         +A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F+ M    F   V T   L+    ++    +   LF ++  R    N  TY  L+ G
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           + +V N+  A  ++ EMI  G  PD +    ML GL    +   A+ + E ++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 182/405 (44%), Gaps = 32/405 (7%)

Query: 215 VDVLERFRHARRPAFRF--FCWAGD------KPGFAHNSRTYNSMMSILGRARQFETMVS 266
           V + +   H     F+   F +A D      K G   + +T   ++S L +A + +    
Sbjct: 183 VKIADLLVHVYSTQFKHLGFGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYE 242

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           + + +   G++  +  F   +NAF        A+ +F  M K      V T N ++  L 
Sbjct: 243 VYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLC 302

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           +S    EA    +K+ K + +P+L TY+V + G  +++ + EA  V  EM + GF P+ V
Sbjct: 303 KSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEV 362

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
            +N +++G  K+G  S+A+K+ + M +KG SPN  +   +I  FCK              
Sbjct: 363 VYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEM 422

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKM 483
                  N   ++ +I     + R       ++EM  R   P DGL    +  L K  K 
Sbjct: 423 IGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQ 482

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EAV ++  ++  GF P I T N ++    + GN +   K+  +M+ RG   D  +Y  
Sbjct: 483 -GEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNT 541

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           LI G   + +  E ++  EEM++KG++  +  +N     L  A +
Sbjct: 542 LISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADK 586



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 171/406 (42%), Gaps = 57/406 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN----------- 287
           G + NS T NS++    ++ Q     ++LEEM  +GL ++  +F + +N           
Sbjct: 391 GISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTA 450

Query: 288 ------------------------AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
                                       A ++ +AV ++  +    F   + T N L+  
Sbjct: 451 LHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHG 510

Query: 324 LGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L ++  + +  +LL D L+     +  TY  L+ G C+   + E   +  EM+ KG +PD
Sbjct: 511 LCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPD 570

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN---------- 432
           +   N++L GL    K  +A +L+   K  G  PNV +Y +MI  +CK N          
Sbjct: 571 IYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLN 630

Query: 433 ----------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                     + VY  LI  +     M+  + L  +M+ RG      TY++L+  +    
Sbjct: 631 ELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIG 690

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           + D+A  +  EM + G  P +  Y  I+  Y + G       V  EM      P+  +YT
Sbjct: 691 LVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYT 750

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++I G     ++ EA K L EM EKG+    + YN F   L + G+
Sbjct: 751 IMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGK 796



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 146/330 (44%), Gaps = 22/330 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  N  T N+++  L +A   +  + +L +M E+GL+    T+   ++      + K+ 
Sbjct: 496 GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEG 555

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + E M K   +  + T N LL  L  + K+ + ++L  +  K+ + PN+ TY V++ G
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDG 615

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + E   + NE++ K  + + V +N ++      G  + A +L + MK++G   +
Sbjct: 616 YCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS 675

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y+ ++   C                      N   YT +I G+    +M+ V  +L+
Sbjct: 676 CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQ 735

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM      P+  TY  +I          EA ++  EM   G  P   TYN       + G
Sbjct: 736 EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEG 795

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             E   KV DEM     C D+ +YT LI G
Sbjct: 796 KVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 29/262 (11%)

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           K    P+L T T LL    +   L ++  V++ +   G  PDV   + M+    K  +  
Sbjct: 214 KKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHRED 273

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           DAI LF  M+  G +PNV +Y  +I   CK                 R+D  Y   ++M 
Sbjct: 274 DAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSG---------------RLDEAYRFKEKMV 318

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           +    P  +TY+  I  L+K++K+ DEA  + KEM   GF P    YN ++  Y + GN 
Sbjct: 319 KEKVSPSLITYSVFINGLIKLEKI-DEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNI 377

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               K+ D+M+ +G  P+  +   LI G    D+ G+A   LEEM+ +G+          
Sbjct: 378 SEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLP--------- 428

Query: 580 AADLSRAGRSYVLDELAQKMRF 601
              +++   S V++ L  K RF
Sbjct: 429 ---INQGSFSMVINWLCLKFRF 447



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  ++  + + G  P++ T   ++ S  +    +   +V+D +   G  PD + ++ +I 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
                 R  +A     +M + G+   V+ YN     L ++GR   LDE
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGR---LDE 309


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 175/375 (46%), Gaps = 24/375 (6%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-G 272
           ++D L + R   + AF  F     + G + +  TYNS++  L    +++ + ++L EM  
Sbjct: 214 IIDSLCKDRQVTQ-AFNLFSEMIHQ-GISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN 271

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
            K + ++  F   ++A     +  +A  + ++M K   +  V T N L++         E
Sbjct: 272 SKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 331

Query: 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           A  +FD +  + F P++ +Y+ L+ G+C+++ + +A  ++ EM  K   P+ V ++ ++ 
Sbjct: 332 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 391

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------- 431
           GL  +G+  DAI LF  M  +G  P+  SY I++   CK                     
Sbjct: 392 GLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDP 451

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           +  +YT +I G      ++   DL   +  +G  P+  TY  +I  +  Q +  EA +++
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLF 511

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM R G+ P   TYN+I + + +      G ++  EM+ RG   D ++ TVL+  L   
Sbjct: 512 GEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDD 571

Query: 552 DRSGEAYKYLEEMLE 566
                  + L E L+
Sbjct: 572 GLDQSVKQILSEFLQ 586



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 161/372 (43%), Gaps = 20/372 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            Y S++  L + RQ     ++  EM  +G+  S+ T+   ++A     E K   A+   M
Sbjct: 210 VYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM 269

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
              K    V   + +++ L +     EA  + D +  R   PN+ TY  L+ G C    +
Sbjct: 270 VNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM 329

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA +V++ M+ KGF PDVV+++ ++ G  KI +   A+ LFE M  K   PN  +Y+ +
Sbjct: 330 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 389

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   C                  R+     L  EM  RG  PD ++Y  L+  +   +  
Sbjct: 390 MHGLCHVG---------------RLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRL 434

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           DEA+ + K +  S   P I  Y +++    + G  E  R ++  +  +G  P+  +YT++
Sbjct: 435 DEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIM 494

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR---F 601
           I GL  Q    EA K   EM  KG       YN       R   +    +L Q+M    F
Sbjct: 495 INGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGF 554

Query: 602 SGKFEVSNVLAR 613
           S     S VL  
Sbjct: 555 SADVSTSTVLVE 566



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 162/351 (46%), Gaps = 22/351 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  ++  + + + + T++S+  +M   G+  ++ T  I +N+F   +    A ++   + 
Sbjct: 71  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKIL 130

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +  + T N L+  L       E   LFDK+    F PN+ TY  L+ G C+V +  
Sbjct: 131 KLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTS 190

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M     +PDVV +  +++ L K  + + A  LF  M  +G SP++ +Y  +I
Sbjct: 191 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLI 250

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      N  +++ ++       ++   +D++  M +RG  
Sbjct: 251 HALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 310

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ +TYNAL+    ++   DEAV+++  MV  GF P + +Y+ ++  Y +    E    +
Sbjct: 311 PNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYL 370

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           ++EM R+   P+  +Y+ L+ GL    R  +A     EM+ +G     + Y
Sbjct: 371 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 421



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 15/234 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ T  +L+  +C ++ L  A  V  +++  G +P++   N ++ GL   GK  + + L
Sbjct: 101 PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 160

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F+ M  +G  PNV +Y  +I   CK  +                     LL+ ME+  C 
Sbjct: 161 FDKMIGEGFQPNVVTYGTLINGLCKVGST---------------SAAIRLLRSMEQGNCQ 205

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + Y ++I  +   +   +A  ++ EM+  G  P+I TYN ++ +      ++    +
Sbjct: 206 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 265

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
            +EM+     P+   ++ ++  L  + +  EA+  ++ M+++G++  V+ YN  
Sbjct: 266 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 319



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 20/219 (9%)

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
           +HN      L      DA+  F  M    P P++  +T ++    K              
Sbjct: 35  SHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQM 94

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N      LI  F + +R+   + +L ++ + G  P+  T+N LI+ + ++   
Sbjct: 95  DSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKI 154

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            E + ++ +M+  GF+P + TY  ++    + G+     ++   M +  C PD   YT +
Sbjct: 155 GEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSI 214

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           I  L    +  +A+    EM+ +G+   +  YN     L
Sbjct: 215 IDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 253



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 20/238 (8%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC- 429
           +N M+     P +     +L  + K+   S  + L   M + G  PN+ +  I+I  FC 
Sbjct: 56  FNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCH 115

Query: 430 -------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                              + N A +  LI G     ++  V  L  +M   G  P+ +T
Sbjct: 116 LQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVT 175

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  LI  +        A+R+ + M +   +P +  Y  I+ S  +         ++ EMI
Sbjct: 176 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMI 235

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +G  P   +Y  LI  L +          L EM+   +   V+ ++     L + G+
Sbjct: 236 HQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 293



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 57/136 (41%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP    +  L+  +   K     + +  +M   G  P I+T N+++ S+           
Sbjct: 65  PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFS 124

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++++ G  P+  ++  LI GL  + + GE     ++M+ +G +  V+ Y      L 
Sbjct: 125 VLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLC 184

Query: 585 RAGRSYVLDELAQKMR 600
           + G +     L + M 
Sbjct: 185 KVGSTSAAIRLLRSME 200


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 205/448 (45%), Gaps = 29/448 (6%)

Query: 149 DDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSL--DRNMEAVLDECG 206
           D+ QD  G+   N  + ++T ++ K   D R+  RV  + D +  L  +  +  VLD+  
Sbjct: 92  DETQDFLGKTSKNRVK-KMTKLALKRAKDWRQ--RVQFLTDRILGLKSEEFVADVLDDRK 148

Query: 207 INLSHNLVVDVLERF-RHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           + ++      V++   + + + A   + W   +  ++ N+R   +++S+LG+A Q    V
Sbjct: 149 VQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAV 208

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE--- 322
            +          +++ +   M  +A      K   + +LM     +  + + N L+    
Sbjct: 209 EIFARAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARL 268

Query: 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             G        +LL +  +    P++ TY  L+    R  NL EA +V+N+M+    +PD
Sbjct: 269 KSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD 328

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431
           +  +N M+    + G   +A +LF+ +++KG  P+  +Y  +++ F ++           
Sbjct: 329 LWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICE 388

Query: 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                    +   Y  +I  +G R + D+ + L  +M+  G  PD +TY  LI  +    
Sbjct: 389 DMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKAN 448

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           M  EA  +  EM+ +  KPT+ T++ ++  Y + G      + +D M+R G  PD  +Y+
Sbjct: 449 MIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYS 508

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMK 570
           V++  L+  + SG+A K  +EM+    K
Sbjct: 509 VMLDILLRFNESGKAMKLYQEMVLHSFK 536



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 160/353 (45%), Gaps = 30/353 (8%)

Query: 253  SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312
            S++G  RQ  TMV              + +   ++A+AA+   ++A AIF  M +     
Sbjct: 768  SLVGSLRQKCTMVDR------------KVWNALIHAYAASGCYERARAIFNTMMRDGPSP 815

Query: 313  GVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
             VD++N L++ L       E  ++  +L+   F  + ++ T++L  +    N+ E  +++
Sbjct: 816  TVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIY 875

Query: 372  NEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
              M   G+ P +  + IM+ GLL  GKR  D   +   M+     P++      IW    
Sbjct: 876  QGMKAAGYFPTMHLYRIMI-GLLAKGKRVRDVEAMVSEMEVARFKPDLS-----IWNSVL 929

Query: 431  QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            +       L TG G+ ++   VY L+   +E G  PD  TYN LI +    + P+E + +
Sbjct: 930  K-------LYTGIGDFKKTGQVYQLI---QEAGLKPDEDTYNTLILMYCRDRRPEEGLSL 979

Query: 491  YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
              EM R G +P + TY  ++ ++ +    E   ++++ ++ + C  D + Y +++    +
Sbjct: 980  MHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRN 1039

Query: 551  QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                 +A K L  M E G++  +   +      S +G+    +++   ++  G
Sbjct: 1040 SGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEG 1092



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 147/351 (41%), Gaps = 26/351 (7%)

Query: 247  TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
            + N +M  L   GR  +   ++  L++MG K  +S  +  + ++AFA A    +   I++
Sbjct: 819  SVNGLMQALIVDGRLDELYVVIQELQDMGFK--ISKSSITLMLDAFAHAGNIFEVKKIYQ 876

Query: 304  LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVK 362
             M    +   +     ++  L + K  ++ + +  +++  RF P+L+ +  +L  +  + 
Sbjct: 877  GMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIG 936

Query: 363  NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
            +  + G+V+  + + G KPD   +N ++    +  +  + + L   M+  G  P + +Y 
Sbjct: 937  DFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYK 996

Query: 423  IMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
             +I  F                    CK + + Y  ++  F N         LL  M+E 
Sbjct: 997  SLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEA 1056

Query: 463  GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
            G  P   T + L+        P+EA ++   +   G   +   Y+ ++ +Y + G++ + 
Sbjct: 1057 GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA 1116

Query: 523  RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
             +   EM + G  PD   +T  +        + EA   L+ + + G   P+
Sbjct: 1117 IQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPI 1167



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 14/265 (5%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+H ++PN      +L    +      A  ++    +      V  +N M+    + G+ 
Sbjct: 180 LRHWYSPNARMLATILSVLGKANQEALAVEIFAR-AEAASGNTVQVYNAMMGVYARTGRF 238

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +   +L ++M+++G  P++ S+  +I    K    V              ++  +LL E+
Sbjct: 239 TKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMV-------------TNLAIELLNEV 285

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  PD +TYN LI     +   +EAV++Y +MV    +P + TYN ++  Y + G  
Sbjct: 286 RRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMS 345

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               +++ ++  +G  PD  +Y  L+     +    +  +  E+M++ G     + YN  
Sbjct: 346 REAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTI 405

Query: 580 AADLSRAGRSYVLDELAQKMRFSGK 604
                + G+  +  +L   M+ SG+
Sbjct: 406 IHMYGKRGQHDLAFQLYSDMKLSGR 430



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 170/406 (41%), Gaps = 33/406 (8%)

Query: 208 NLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           +L++++++D+L RF  + +    ++       KP  A     Y  M+ +LG+  + E + 
Sbjct: 504 HLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHA----LYEVMLRVLGKENREEDVH 559

Query: 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            ++++M E  L  M + ++  +     +    A  +  L      +   + +  +L + G
Sbjct: 560 KVVKDMEE--LCGMNS-QVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYG 616

Query: 326 RSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            S    EA+ L D L+ H    +      L+   C+   L +A R + +  D G      
Sbjct: 617 SSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGL---FC 673

Query: 385 AHNIMLEGLLKIGKR----SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
               M E LL   +     ++A ++F  M+  G  P+   Y  M+  +CK          
Sbjct: 674 GSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKM--------- 724

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLT-YNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
            GF      +  + L+ + EE+G   D ++ +  +I+     K+  +A  +   + +   
Sbjct: 725 -GFP-----ETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCT 778

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
                 +N ++ +Y  +G YE  R +++ M+R G  P  +S   L+  LI   R  E Y 
Sbjct: 779 MVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYV 838

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            ++E+ + G K             + AG  + + ++ Q M+ +G F
Sbjct: 839 VIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYF 884


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 20/327 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDK 339
           ++ + M A  A +   +AV +   M     +A V T   L+  L   +++ K  +L+ + 
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM 176

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            +    PN+  Y+ LL G+C+     + G+V+ EM +KG +PDVV +  +++ L K+GK 
Sbjct: 177 CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
             A  + ++M  +G  PNV +Y ++I   CK+ +               +     +LK+M
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS---------------VKEAIGVLKKM 281

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQT 516
            E+G  PD +TYN LIK L  + +M DEA+ + +EMVR     KP + T+N +++     
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEM-DEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G      +V   M   GC  +  +Y +LIGGL+   +  +A + ++EM   G++     Y
Sbjct: 341 GRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTY 400

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           +       +  +    ++L   MR  G
Sbjct: 401 SILIKGFCKMWQVDRAEDLLSTMRDRG 427



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 27/338 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TYN +++ + +    +  + +L++M EKG+   + T+   +   +   E  +A
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309

Query: 299 VAIFELMNKYK--FKAGVDTINCLLENL---GRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
           + + E M + K   K  V T N +++ L   GR +   + + + ++       NL TY +
Sbjct: 310 MWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV--NLVTYNL 367

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+GG  RV  + +A  + +EM   G +PD   ++I+++G  K+ +   A  L   M+ +G
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 414 PSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYD 454
             P +  Y  ++   C+Q                   +   Y+ +I G      +    +
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LLK + + G  PD +TY+ +I +       + A  + K+M  SGF P +  ++ +++ Y 
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
             G      ++  EMI +    D    + L   L++ +
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKIISTLSTSLVASN 585



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 174/393 (44%), Gaps = 31/393 (7%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFA 290
            C +G +P    N   Y+S++    ++ ++E +  +  EM EKG+   +  +   +++  
Sbjct: 176 MCESGIEP----NVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLT 349
              + KKA  + ++M +   +  V T N L+  + +    KEA  +  K+  +   P++ 
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKG---FKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           TY  L+ G   V  + EA  +  EM+ +G    KP+VV  N +++GL  IG+   A ++ 
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVR 350

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
            +M+  G   N+ +Y ++I    +                     ++  Y+ LI GF   
Sbjct: 351 AMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKM 410

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            ++D   DLL  M +RG  P+   Y  L+  M  Q M + A  ++ EM  + F   +  Y
Sbjct: 411 WQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAY 469

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           + ++    + G+ +  +++   ++  G  PD  +Y+++I           A   L++M  
Sbjct: 470 STMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTA 529

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            G    V  ++      S  G    + EL ++M
Sbjct: 530 SGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           D V++N +L  L + G    A  L   M  + P P            C+ NA  YT L+ 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLE-PHPA-----------CRPNAVSYTVLMR 123

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                R  D    LL+ M   G   D +TY  LI+ +      D+AV +  EM  SG +P
Sbjct: 124 ALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEP 183

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            +  Y+ +++ Y ++G +E   KV+ EM  +G  PD   YT LI  L    ++ +A+  +
Sbjct: 184 NVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVM 243

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAG 587
           + M+ +G++  V+ YN     + + G
Sbjct: 244 DMMVRRGLEPNVVTYNVLINCMCKEG 269


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 159/346 (45%), Gaps = 22/346 (6%)

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
           ++L+EM   G+ L+   +   ++ +   K+  +   + E+M     +A V T   L+++L
Sbjct: 153 ALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSL 212

Query: 325 GRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
             +    + + + D++K +    ++  YT ++  +CR  N+  A  V++E +  G +P+ 
Sbjct: 213 STAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNE 272

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
             + +++ G  KIG+   A  L   M+ +G   N   +  MI  +C+Q            
Sbjct: 273 RTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAA 332

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   +   Y  L  G     RM     LL  M E+G PP+ +TY  LI +   +  
Sbjct: 333 MEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGD 392

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA R+++EM   G  P++ TYN++M  Y + G+     +   EM ++G  PD  +Y  
Sbjct: 393 MVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYAS 452

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           L+ G     +   A K  EEM  +G +  V+ Y    + L++ GRS
Sbjct: 453 LVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRS 498



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 50/242 (20%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           A +K G   +  TYN++   L R  +     ++L  M EKG+                  
Sbjct: 332 AMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPP---------------- 375

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTV 353
                        Y     + +I+C   ++       EA+ LF ++  +   P++ TY V
Sbjct: 376 ------------NYVTYTTLISIHCKEGDM------VEARRLFREMAGKGAMPSVVTYNV 417

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G+ +  ++ EA R   EM  KG  PDV  +  ++ G    GK   A+KLFE MK +G
Sbjct: 418 MMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRG 477

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             PNV                 YT LI+G     R +  + L  +M + G  PD   Y+A
Sbjct: 478 TEPNV---------------VAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSA 522

Query: 474 LI 475
           L+
Sbjct: 523 LV 524



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 55/281 (19%)

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           +V++ G+C+   + +A  + +EM   G + + + +N +L+  ++    +   +L E+M+ 
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMEN 195

Query: 412 KGPSPNVRSYTIMI------WKFCKQNAAV--------------YTCLITGF---GNRRR 448
            G    V +YTI++          K  A V              YT +I  +   GN RR
Sbjct: 196 GGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRR 255

Query: 449 MDIVYD--------------------------------LLKEMEERGCPPDGLTYNALIK 476
              V+D                                LL +M+ RG   + + +N +I 
Sbjct: 256 ASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMID 315

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               Q M D A+++   M + G +  ++TYN +     +       + +   MI +G  P
Sbjct: 316 GYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPP 375

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +  +YT LI     +    EA +   EM  KG    V+ YN
Sbjct: 376 NYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYN 416



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 35/186 (18%)

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           + ++ GF    R+D    LL EM   G   + L YN+L+     +K       + + M  
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMEN 195

Query: 497 SGFKPTIHTYNMIMKS-----------------------------------YFQTGNYEM 521
            G + T+ TY +++ S                                   Y + GN   
Sbjct: 196 GGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRR 255

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             +V+DE +  G  P++ +Y VLI G     +   A   L +M  +G+    + +N    
Sbjct: 256 ASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMID 315

Query: 582 DLSRAG 587
              R G
Sbjct: 316 GYCRQG 321


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 187/440 (42%), Gaps = 47/440 (10%)

Query: 208 NLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSIL---------- 255
           +L+ N ++D++    H+  P     FF W   +  F  +  +Y +M   L          
Sbjct: 64  SLTPNHLIDLINLNPHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQ 123

Query: 256 ----------GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
                     G+        S+LE  G     S   F + MNA+  +     A+  F L+
Sbjct: 124 SLLQFVVSRKGKNSASSVFTSVLEARGTHQ--SNLVFSVLMNAYTDSGYFSDAIQCFRLV 181

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNL 364
            K+  +    +   L + L +  L   A   +++ L   + P++  + VL+   C+   +
Sbjct: 182 RKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKI 241

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  ++ E+  +G +P VV+ N ++ G  K G      +L   M      P+V +Y+++
Sbjct: 242 NEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVL 301

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK+                    N   +T LI G     R D+  ++ ++M  +G 
Sbjct: 302 INGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGV 361

Query: 465 PPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            PD +TYN LI  L K+  +  EA ++  EM + G KP   TY M++    + G+ E   
Sbjct: 362 KPDVITYNTLINGLCKVGDL-REAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESAL 420

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           ++  EM++ G   D+ ++T LI G   + +  EA + L EMLE G+K     Y       
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            + G      +L ++M+  G
Sbjct: 481 CKKGDVKTGFKLLKEMQCDG 500



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 167/371 (45%), Gaps = 18/371 (4%)

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIA 285
           PA+ F+    D  G+  +   +N +M  L +  +      +  E+G++GL  ++ +F   
Sbjct: 208 PAWAFYEEILDC-GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTL 266

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           +N +  +    +   +   M + +    V T + L+  L +     +A  LF ++  R  
Sbjct: 267 INGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL 326

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            PN  T+T L+ G C          ++ +M+ KG KPDV+ +N ++ GL K+G   +A K
Sbjct: 327 VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKK 386

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L   M  +G  P+  +YT++I   CK+                 ++   ++ KEM + G 
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEGD---------------LESALEIRKEMVKEGI 431

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D + + ALI     +    EA R  +EM+ +G KP   TY M++  + + G+ + G K
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +  EM   G  P   +Y VL+ GL  Q +   A   L+ ML  G+    + YN       
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHC 551

Query: 585 RAGRSYVLDEL 595
           + G     D+L
Sbjct: 552 KHGNREDFDKL 562


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 173/405 (42%), Gaps = 56/405 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   ++  +N ++  L   + ++  VS+ +EM + G+    T+ I ++     ++ ++A+
Sbjct: 347 GLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREAL 406

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL--- 355
            ++E MN+   K  + T + LL     +    EA  L+ ++  + FTPN+ TYT L+   
Sbjct: 407 NLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGH 466

Query: 356 --------------------------------GGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
                                            G C V  + E G +      +GF P  
Sbjct: 467 INKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTA 526

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
           + +N ++ G +K G    A  +++ M AKG  PN+ +YT  I  +CK             
Sbjct: 527 MTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLND 586

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   + A Y  LI GF     M     +L  M + G  P+   YN+ I   K  KM
Sbjct: 587 VRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKM 646

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA+R Y++M++ G      TY  ++  + + GN     K++ EM+ +G  PD  ++T 
Sbjct: 647 MEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTA 706

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           L  GL       +A K L+EM    ++  VL YN       R G+
Sbjct: 707 LTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGK 751



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  N  TY ++M        F+   ++L EM + G+   + T+   +N         + 
Sbjct: 451 GFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVG---RV 507

Query: 299 VAIFELMNKYKFKAGVDTI---NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             + E++ +++ +  V T    N ++    ++ +   A  ++ ++  +   PN+ TYT  
Sbjct: 508 CEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSF 567

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+      A ++ N++  KG +PD+ A+N ++ G  + G  S A+++  +M   G 
Sbjct: 568 IDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGL 627

Query: 415 SPNV--------------------RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
            PN+                    R Y  MI +    + A YT LI GF     +     
Sbjct: 628 LPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALK 687

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L  EM  +G  PD +T+ AL   +      D+A ++  EM R   +P +  YNM++  Y 
Sbjct: 688 LYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYL 747

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           + G  +   ++ DEM+ R   PDD +Y +L+G
Sbjct: 748 RNGKLQEAFRLHDEMLERKIMPDDTTYDILVG 779



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 53/350 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF     T+NS++ +L +  + E  + + +E+   G  +S+      M+ +   +E +KA
Sbjct: 242 GFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKA 301

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + IFE                                  + L+    P   TYTVL+ G 
Sbjct: 302 LDIFE----------------------------------ETLRDGLVPTDVTYTVLIRG- 326

Query: 359 CRVKNLME-AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C  + + E A  +  +M D G  P     N++++GLL      DA+ LF+ M   G  P+
Sbjct: 327 CTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG-IPD 385

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y I+I   C+               RR++    +L ++M E G  P  +TY++L+  
Sbjct: 386 AFTYNILIHWLCQ---------------RRKIREALNLWEKMNETGVKPYIVTYHSLLLC 430

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
             +    DEAV++Y EM   GF P + TY  +MK +     ++    +  EM + G   +
Sbjct: 431 YCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCN 490

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           D +Y  LI GL    R  E  + L+    +G     + YN       +AG
Sbjct: 491 DYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 158/366 (43%), Gaps = 18/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++  ++ +M    +   ++  V + +EM    +        +A+ +    ++  +A
Sbjct: 172 GHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRA 231

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGG 357
           + +   M    F     T N +++ L +    +EA  + D+L       ++   T L+ G
Sbjct: 232 LLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHG 291

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C  + + +A  ++ E +  G  P  V + +++ G  + G    A +L   M+  G  P+
Sbjct: 292 YCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              + +               +I G  N +       L KEM + G P D  TYN LI  
Sbjct: 352 TNEFNM---------------VIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHW 395

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  ++   EA+ ++++M  +G KP I TY+ ++  Y   G  +   K++ EM  +G  P+
Sbjct: 396 LCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPN 455

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +YT L+ G I++    +AY  L EM + G+      YN     L   GR   + E+ +
Sbjct: 456 VVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLK 515

Query: 598 KMRFSG 603
           +    G
Sbjct: 516 RFETEG 521



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 113/260 (43%), Gaps = 22/260 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF   + TYNS+++   +A    +  ++ ++M  KG+  ++ T+   ++ +        A
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLA 580

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           + +   +     +  +   N L+    +   +    Q+L   LK    PN++ Y   + G
Sbjct: 581 LKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITG 640

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +  +K + EA R + +MI +G   D   +  +++G  K G  + A+KL+  M AKG  P+
Sbjct: 641 YKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD 700

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++T +    C+                     N  +Y  LI G+    ++   + L  
Sbjct: 701 HITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 458 EMEERGCPPDGLTYNALIKL 477
           EM ER   PD  TY+ L+ +
Sbjct: 761 EMLERKIMPDDTTYDILVGM 780



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 50/236 (21%)

Query: 377 KGFKPDVVAH-----------------------------------NIMLEGLLKIGKRSD 401
           +G  PD  +                                    ++++    K G   D
Sbjct: 136 RGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGMYDD 195

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A++LF+ M A    P+ R  ++ I   CK   A          NR  +     +L++M++
Sbjct: 196 AVRLFDEMPASEIEPDQRVCSVAIASLCKLRDA----------NRALL-----VLRKMQD 240

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  P   T+N+++ ++      +EA+ I  E++ +G K ++     +M  Y        
Sbjct: 241 AGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRK 300

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
              +++E +R G  P D +YTVLI G   +    +AY+   +M + G+     ++N
Sbjct: 301 ALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFN 356



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K G   N   YNS ++     +  E  +   E+M ++G+ L   T+   ++ F+      
Sbjct: 624 KDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVT 683

Query: 297 KAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVL 354
            A+ ++ E++ K      + T   L   L R+    +A+ L D++ +    PN+  Y +L
Sbjct: 684 FALKLYSEMVAKGNIPDHI-TFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNML 742

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           + G+ R   L EA R+ +EM+++   PD   ++I++ G+  +G  S
Sbjct: 743 INGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV-GMKSLGSDS 787



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 1/154 (0%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME RG  PD  +   L+ +        +A+ +  EM   G       ++++M++ F+ G 
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGM 192

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
           Y+   +++DEM      PD    +V I  L     +  A   L +M + G       +N 
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
               L + GR      +  ++  +GK ++S VLA
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGK-KMSVVLA 285


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 173/379 (45%), Gaps = 52/379 (13%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  + +YNS++  L      +    +  EM   G    E T+ + ++A   +   ++ 
Sbjct: 768  GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEM 827

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            + +   M++  +++   T N ++  L +SK L +   L ++ +   F+P   TY  LL G
Sbjct: 828  LRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDG 887

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +   +++A  ++NEM++ G KP+   +NI+L G    G   +  ++FE M  +G +P+
Sbjct: 888  LLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPD 947

Query: 418  VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYT++I   C                    + +  +Y  LI G G   R++    L  
Sbjct: 948  IKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFN 1007

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            EM+++G  P+  TYN+LI  +       EA ++Y+E++  G+KP + TYN +++ Y  +G
Sbjct: 1008 EMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSG 1067

Query: 518  NYEMGRKVWD------------------------------EMIRRGCCPDDNSYTVLIGG 547
            + +     +D                              EM RRGC PD  +Y +++  
Sbjct: 1068 STDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDA 1127

Query: 548  LISQDRSGEAYKYLEEMLE 566
            +    R  E  K  EE+ E
Sbjct: 1128 IGKSMRIEEMLKVQEEIAE 1146



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 23/354 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + + RTY+ +M   G+ R  +T++ +L EM  +G+  ++ ++ I +     A    +A
Sbjct: 208 GISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEA 267

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL-- 355
             I   M     K  V T   +++ L  +    +A+ +F K+K     P+  TY  LL  
Sbjct: 268 YQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDK 327

Query: 356 -GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
            G     +++ME   +WN M+  G+  ++V++  +++ L ++G+  +A+ +F+ MK KG 
Sbjct: 328 CGDSGDSQSVME---IWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGI 384

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SP   SY                 LI+GF      D   +L   M   G  P+G T+   
Sbjct: 385 SPEQYSYN---------------SLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLF 429

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I          +A++ Y+ M   G  P +   N ++ S  ++G   M ++V+ E+   G 
Sbjct: 430 INYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGV 489

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +YT++I       ++ EA  +  +M+E G    VL  N     L + G+
Sbjct: 490 SPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGK 543



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 22/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y   + +LG+A +F+    +L +M + G    + T  + +     A     A
Sbjct: 243 GVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDA 302

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F  M     K    T   LL+  G S   +    +++ +    +  N+ +YT ++  
Sbjct: 303 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDA 362

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V  L EA  V++EM +KG  P+  ++N ++ G LK      A++LF  M A GPSPN
Sbjct: 363 LCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPN 422

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++ + I  + K                     + A    +++      R+ +   +  
Sbjct: 423 GYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFY 482

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+++ G  PD +TY  +IK        DEA+  + +MV +G  P +   N ++ + ++ G
Sbjct: 483 ELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGG 542

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                 K++ ++      P + +Y  L+ GL  + +  E    LEEM        ++ YN
Sbjct: 543 KGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYN 602

Query: 578 KFAADLSRAGR 588
                LS+ G 
Sbjct: 603 TVLDCLSKNGE 613



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 160/363 (44%), Gaps = 25/363 (6%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
            +++S+M  +      E  +   E +  +G+L  + F   +       + KKA+   +L N
Sbjct: 705  SFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPL--IRHLCKHKKALEAHQLFN 762

Query: 307  KYK-----FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCR 360
            K+K      K G  + N L+  L    L   A+ LF ++K     P+  TY ++L    +
Sbjct: 763  KFKGLGVSLKTG--SYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGK 820

Query: 361  VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
               + E  RV  EM  KG++   V +N ++ GL+K  +   AI L+  + ++G SP    
Sbjct: 821  SMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPT--- 877

Query: 421  YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                           Y  L+ G     +M    +L  EM E GC P+   YN L+   +I
Sbjct: 878  ------------PCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRI 925

Query: 481  QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
                +   +I+++MV  G  P I +Y +++ +    G    G   + +++  G  PD   
Sbjct: 926  AGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLII 985

Query: 541  YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            Y +LI GL   +R  EA     EM +KG+   +  YN     L +AG++    ++ +++ 
Sbjct: 986  YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045

Query: 601  FSG 603
              G
Sbjct: 1046 IKG 1048



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 162/379 (42%), Gaps = 22/379 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++S LGR  + + ++ +LEEM       ++ T+   ++  +   E   A+ +   M
Sbjct: 565 TYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSM 624

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
            +      + + N ++  L + +  +EA  +F ++K    P+  T   +L  + +   + 
Sbjct: 625 TEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMK 684

Query: 366 EAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           EA     E I K     D  + + ++EG+L       +I+  E + ++G   N      +
Sbjct: 685 EALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPL 744

Query: 425 IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK   A+                    Y  LI G  +   +DI  DL  EM+  GC
Sbjct: 745 IRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGC 804

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN ++  M      +E +R+  EM R G++ T  TYN I+    ++   E    
Sbjct: 805 GPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAID 864

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  ++  G  P   +Y  L+ GL+   +  +A     EMLE G K     YN       
Sbjct: 865 LYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHR 924

Query: 585 RAGRSYVLDELAQKMRFSG 603
            AG +  + ++ +KM   G
Sbjct: 925 IAGNTENVCQIFEKMVEQG 943



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 150/339 (44%), Gaps = 21/339 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G+  N  +Y +++  L +  + +  +++ +EM EKG+   + ++   ++ F  A    +A
Sbjct: 348 GYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRA 407

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + +F  MN         T    +   G+S    +A   ++ +K +   P++     +L  
Sbjct: 408 LELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSS 467

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R   L  A RV+ E+ D G  PD + + +M++   K  K  +A+  F  M   G  P+
Sbjct: 468 LARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPD 527

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V +           N+ + T    G GN       + L  +++E    P   TYN L+  
Sbjct: 528 VLAL----------NSLIDTLYKGGKGNE-----AWKLFHQLKEMKIEPTNGTYNTLLSG 572

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    E + + +EM  S   P + TYN ++    + G       +   M  +GC PD
Sbjct: 573 LGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPD 632

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            +SY  ++ GLI ++R  EA++   +M  K + AP  DY
Sbjct: 633 LSSYNTVMYGLIKEERFEEAFRMFCQM--KKILAP--DY 667



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 22/290 (7%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +F+LM K   KA V T   +   +G     + A +    ++    + N  TY  L+    
Sbjct: 130 VFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLV 189

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA---IKLFEVMKAKGPSP 416
           +     EA  V+  M++ G  P V  +++++   +  GK+ D    + L   M+A+G  P
Sbjct: 190 KSGFDAEAMEVYKAMVEDGISPSVRTYSVLM---VSFGKKRDVDTVLWLLNEMEARGVKP 246

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           NV SYTI I                  G   R D  Y +L +ME+ GC PD +T+  +I+
Sbjct: 247 NVYSYTICIRVL---------------GQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQ 291

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           ++       +A  ++ +M  S  KP   TY  ++     +G+ +   ++W+ M+  G   
Sbjct: 292 VLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYND 351

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +  SYT ++  L    R  EA    +EM EKG+      YN   +   +A
Sbjct: 352 NIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKA 401



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 405 LFEVMKAKGPSPNV-RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           + E+M+A G   ++ + + +M  +  K N   +  + +G G +  +      L  M E G
Sbjct: 114 MLELMRAHGRVGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAG 173

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              +G TYN LI  +       EA+ +YK MV  G  P++ TY+++M S+ +  + +   
Sbjct: 174 MSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVL 233

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            + +EM  RG  P+  SYT+ I  L    R  EAY+ L +M + G K  V+ +      L
Sbjct: 234 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVL 293

Query: 584 SRAGRSYVLDELAQKMRFS 602
             AGR     ++  KM+ S
Sbjct: 294 CDAGRLSDAKDVFWKMKAS 312



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 90/477 (18%), Positives = 171/477 (35%), Gaps = 129/477 (27%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G +    +YNS++S   +A  F+  + +   M   G   +  T  + +N +  + +  KA
Sbjct: 383 GISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKA 442

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +  +E M        V   N +L +L RS     A+ +F +LK    +P+  TYT+++  
Sbjct: 443 IQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKC 502

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF----------- 406
             +     EA   +++M++ G  PDV+A N +++ L K GK ++A KLF           
Sbjct: 503 CSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPT 562

Query: 407 ------------------------EVMKAKGPSPNVRSYTI------------------- 423
                                   E M      PN+ +Y                     
Sbjct: 563 NGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLY 622

Query: 424 -MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
            M  K C  + + Y  ++ G     R +  + +  +M ++   PD  T   ++       
Sbjct: 623 SMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQM-KKILAPDYATLCTILPSFVKNG 681

Query: 483 MPDEAVRIYKEMV---------------------RSG------FKPTIHTYNMIMKSYF- 514
           +  EA+   KE +                     ++G      F   I +  +++  +F 
Sbjct: 682 LMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFL 741

Query: 515 ------------------------------QTGNY-------------EMGRKVWDEMIR 531
                                         +TG+Y             ++   ++ EM R
Sbjct: 742 CPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKR 801

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            GC PD+ +Y +++  +    R  E  +   EM  KG ++  + YN   + L ++ R
Sbjct: 802 LGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKR 858


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 176/373 (47%), Gaps = 31/373 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA----KER 295
           G A +  TY+++MS   +  + +  + +L+EM       ++   +  NA         E 
Sbjct: 189 GLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPS---YEVQPDAVCYNALLGGCFRNGEF 245

Query: 296 KKAVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTV 353
           +KA+ ++E L+        + T N +L+ L +  + KEA  +++++  +   P++ TY  
Sbjct: 246 EKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGT 305

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G CR  ++  A RV++EMI  G  PDVV +N +L+G    G+  +A K ++ M   G
Sbjct: 306 MIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG 365

Query: 414 PSPNVRSYTIMI---------------WKFCKQNAAV------YTCLITGFGNRRRMDIV 452
              NV SY IM+               W+  +++ ++      ++ +I G   +   +  
Sbjct: 366 IR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKS 424

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             +L+E    G   D  +Y+++I  +      D+AV++Y+++    FKP  H YN ++  
Sbjct: 425 LQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALING 484

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           + Q   +    +V+ +M    C P   +Y  LI GL   ++  EA ++  EMLEKG    
Sbjct: 485 FCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLD 544

Query: 573 VLDYNKFAADLSR 585
           V  Y      L R
Sbjct: 545 VNTYGSLIRGLCR 557



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 155/365 (42%), Gaps = 19/365 (5%)

Query: 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
           +L+ F HA R    +  W         N  +YN M+  L      +    + E + +   
Sbjct: 341 LLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDS 400

Query: 277 LS--METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334
           LS  M TF   ++         K++ I E       +    + + ++  L +     +A 
Sbjct: 401 LSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAV 460

Query: 335 LLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
            L++K+    F PN   Y  L+ G+C+     +A RV+++M +    P  + +N ++ GL
Sbjct: 461 KLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGL 520

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
            K  K  +A +    M  KG               C  +   Y  LI G    +++D   
Sbjct: 521 CKAEKYLEASRFTREMLEKG---------------CMLDVNTYGSLIRGLCRDKKIDGAL 565

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV-RSGFKPTIHTYNMIMKS 512
            L  ++ ++G   D + +N LI  +      DEA ++  EM  ++   P + TYN +M  
Sbjct: 566 ALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDG 625

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           +++TG ++    +W  ++  G  PD  SY   I GL S +R+ E  + L EML  G+   
Sbjct: 626 FYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPT 685

Query: 573 VLDYN 577
            + +N
Sbjct: 686 AITWN 690



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 30/284 (10%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK-------IAMNAFAAAKERKKAV 299
           +Y+SM+S L +  + +  V + E+      +SM++FK         +N F  A +   A+
Sbjct: 442 SYSSMISGLCKDGRLDDAVKLYEK------ISMDSFKPNSHIYNALINGFCQASKFSDAI 495

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGW 358
            ++  M +        T N L+  L +++   EA +   + L+     ++ TY  L+ G 
Sbjct: 496 RVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGL 555

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR K +  A  +WN+++DKG + DVV HNI++ GL   GK  +A +L   MK K      
Sbjct: 556 CRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNN---- 611

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-L 477
                     C  N   Y  L+ GF      D    L   + E G  PD ++YN  IK L
Sbjct: 612 ----------CCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGL 661

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
               + P E V++  EM+ SG  PT  T+N+++++  + G  ++
Sbjct: 662 CSCNRTP-EGVQLLNEMLASGIIPTAITWNILVRAVIKYGPIQI 704



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 168/394 (42%), Gaps = 28/394 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TY +M+  L R+   ++   +  EM + GL+  +  +   +  F  A    +A   ++ M
Sbjct: 302 TYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSM 361

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKN 363
           +    +  V + N +L+ L    +  +A  L++ L+     +P++ T++ ++ G C    
Sbjct: 362 SVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGF 420

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
             ++ ++  E    G + D  +++ M+ GL K G+  DA+KL+E +      PN   Y  
Sbjct: 421 ANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNA 480

Query: 424 MIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  FC+ +                       Y  LI G     +        +EM E+G
Sbjct: 481 LINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKG 540

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C  D  TY +LI+ +   K  D A+ ++ +++  G +  +  +N+++      G  +   
Sbjct: 541 CMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEAS 600

Query: 524 KVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           ++  EM  +  CCP+  +Y  L+ G        +A      +LE G+   ++ YN     
Sbjct: 601 QLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKG 660

Query: 583 LSRAGRSYVLDELAQKMRFSGKFEVS---NVLAR 613
           L    R+    +L  +M  SG    +   N+L R
Sbjct: 661 LCSCNRTPEGVQLLNEMLASGIIPTAITWNILVR 694



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 26/268 (9%)

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV---KNLMEAGRVWNEMIDKGFKPDV 383
           S+LP+   +L  +L+HR   + +   V+L  + R       + A R     +  G  P V
Sbjct: 64  SRLPRLLGIL-PRLRHRPRFSESAALVVLSAFSRALMPDAALAAFRRLPSFL--GCNPGV 120

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMK----AKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
            +HN +L+  ++  + SDA   F  +      +  +PN+++Y IM+   C          
Sbjct: 121 RSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCV--------- 171

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
                 R  +D    L   +  RG  PD +TY+ L+         D A+ +  EM     
Sbjct: 172 ------RGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEV 225

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAY 558
           +P    YN ++   F+ G +E   +VW++++R  G  P+  +Y V++ GL       EA 
Sbjct: 226 QPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAG 285

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRA 586
              E M+    +  ++ Y      L R+
Sbjct: 286 DVWERMVANNHQPDMITYGTMIHGLCRS 313



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF----KPTIHTYNMIMKSYFQTGN 518
           GC P   ++NAL+      +   +A   +  +    F     P + TYN++++S    G+
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGD 174

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +    ++D +  RG  PD  +Y+ L+ G +  +R   A   L+EM    ++   + YN 
Sbjct: 175 LDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNA 234

Query: 579 FAADLSRAG 587
                 R G
Sbjct: 235 LLGGCFRNG 243


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 188/423 (44%), Gaps = 85/423 (20%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +++ L E   +LS   V+  L+  R   + A  FF W   K GF HN ++Y  M+ ILGR
Sbjct: 175 LQSSLAELAPSLSKTTVLQTLQLIRTPAK-ALHFFRWVEAK-GFTHNEQSYFLMIEILGR 232

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK----KAVAIFELMNKYKFKAG 313
           +R                         A   F  + E+K    +++ +F+ M +      
Sbjct: 233 SRNLN----------------------AARNFVFSIEKKSGGAESIKVFKTMKEIGVSPS 270

Query: 314 VDTINCLLENL---GRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAG 368
           V T N LL  +   GR+ + K+   LFD++   +  TP+  T+ +L+ G+C         
Sbjct: 271 VVTFNSLLSIVLKRGRTSMAKQ---LFDEMLDTYGVTPDTYTFNILIRGFC--------- 318

Query: 369 RVWNEMIDKGF-----------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--S 415
              N M+D+GF            PDVV +N +++GL + GK   A  + + M  K P  S
Sbjct: 319 --MNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLS 376

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV +YT +I  +C                ++ M     LL EM  RG  P+ +TYN LI
Sbjct: 377 PNVVTYTTLIRGYCM---------------KQDMAEALSLLAEMVSRGLKPNKITYNTLI 421

Query: 476 K-LMKIQKMPDEAVRIYKEMV-RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           + L + QK+ D+   I + MV   GF P   T N ++K++   G  E    V+++M    
Sbjct: 422 QGLCEAQKL-DKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELR 480

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-------GMKAPVLDYNKFAADLSRA 586
             PD  +Y+VL+  L  +     A ++ +E+ EK       G K  V  YN     L   
Sbjct: 481 VQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN 540

Query: 587 GRS 589
           G++
Sbjct: 541 GKT 543



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 146/343 (42%), Gaps = 49/343 (14%)

Query: 278 SMETFKIAMN-AFAAAKERKKAVAIFELMN----KYKFKAGVDTI------NCLLENLGR 326
           S +  KI  N    AA + K++ A+  L+N     ++ ++ +  +        +L+ L  
Sbjct: 138 SQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQL 197

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
            + P +A   F  ++ + FT N  +Y +++    R +NL  A R +   I+K        
Sbjct: 198 IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNL-NAARNFVFSIEK-------- 248

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
                    K G  +++IK+F+ MK  G SP+V                 +  L++    
Sbjct: 249 ---------KSGG-AESIKVFKTMKEIGVSPSV---------------VTFNSLLSIVLK 283

Query: 446 RRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
           R R  +   L  EM +  G  PD  T+N LI+   +  M DE    +KEM R    P + 
Sbjct: 284 RGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVV 343

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRG--CCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           TYN ++    + G  ++   V   M+++     P+  +YT LI G   +    EA   L 
Sbjct: 344 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 403

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           EM+ +G+K   + YN     L  A +   + E+ + M   G F
Sbjct: 404 EMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGF 446



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 26/287 (9%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           P  + N  TY +++      +     +S+L EM  +GL   + T+   +     A++  K
Sbjct: 373 PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK 432

Query: 298 AVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLL 355
              I E ++    F     T+N L++        +EA  +F+K+   R  P+  TY+VL+
Sbjct: 433 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLV 492

Query: 356 GGWCRVKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
              C+  +   A   ++E+ +K       G KP V A+N M E L   GK   A ++F  
Sbjct: 493 RSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQ 552

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           +  +G                 Q+   Y  LI G       +  +DLL  M  R   PD 
Sbjct: 553 LMKRG----------------TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDA 596

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            TY  +I  +  +  P  A +  ++M++S   PT   ++ I+ +  +
Sbjct: 597 ETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVE 643


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 22/327 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  +  YNS++  L      +    +  EM E G    E T+ + ++A   +   ++ 
Sbjct: 750  GVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 809

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            + + E M++  +++   T N ++  L +S+ L +   L ++ +   F+P   TY  LL G
Sbjct: 810  LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 869

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +   + +A  ++NEM++ G K +   +NI+L G    G       LF+ M  +G +P+
Sbjct: 870  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 929

Query: 418  VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYTI+I   CK                     +   Y  LI G G  +R++    L  
Sbjct: 930  IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 989

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            EM+++G  P+  TYN+LI  +       EA ++Y+E++  G+KP + TYN +++ Y  +G
Sbjct: 990  EMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1049

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            + +     +  MI  GC P+ ++Y  L
Sbjct: 1050 STDSAYAAYGRMIVGGCLPNSSTYMQL 1076



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + RTY+ +M   G+ R  ET++ +L EM   G+  ++ ++ I +     AK   +A
Sbjct: 190 GVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEA 249

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M     K  V T   L++ L  +    +A+ +F K+K     P+  TY  LL  
Sbjct: 250 YRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDK 309

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +    +      +WN M   G+  +VVA+  +++ L ++G+  +A+++F+ MK KG  P 
Sbjct: 310 FGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 369

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             SY                 LI+GF    R     +L K M+  G  P+G T+   I  
Sbjct: 370 QYSYN---------------SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 414

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   +A++ Y+ M   G  P +   N ++    ++G   M ++V+ E+   G  PD
Sbjct: 415 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 474

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +YT++I       +  EA K   +M+E      VL  N     L +AGR 
Sbjct: 475 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRG 526



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 160/370 (43%), Gaps = 22/370 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y   + +LG+A++F+    +L +M  +G    + T  + +     A     A
Sbjct: 225 GVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDA 284

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M K   K    T   LL+  G +   +    +++ +K   +  N+  YT ++  
Sbjct: 285 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDA 344

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V  + EA  +++EM  KG  P+  ++N ++ G LK  +  DA++LF+ M   GP PN
Sbjct: 345 LCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPN 404

Query: 418 --------------------VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
                               ++ Y +M  K    +      ++ G     R+ +   +  
Sbjct: 405 GYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFH 464

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E++  G  PD +TY  +IK        DEAV+I+ +M+ +   P +   N ++ + ++ G
Sbjct: 465 ELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAG 524

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   +++ ++      P D +Y  L+ GL  + +  E    LEEM        ++ YN
Sbjct: 525 RGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYN 584

Query: 578 KFAADLSRAG 587
                L + G
Sbjct: 585 TILDCLCKNG 594



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 165/379 (43%), Gaps = 22/379 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ LGR  + + ++ +LEEM       ++ T+   ++          A+ +   M
Sbjct: 547 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 606

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                   + + N ++  L + +   EA  +F ++K    P+  T   +L  + ++  + 
Sbjct: 607 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMK 666

Query: 366 EAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           EA  +  +  +  G K D  + + ++EG+LK      +I+  E++ + G + +      +
Sbjct: 667 EALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPL 726

Query: 425 IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CKQ  A+                    Y  LI G  +   +DI   L  EM+E GC
Sbjct: 727 IKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGC 786

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TYN L+  M      +E +++ +EM R G++ T  TYN I+    ++   E    
Sbjct: 787 GPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAID 846

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  ++ +G  P   +Y  L+ GL+   R  +A     EMLE G KA    YN       
Sbjct: 847 LYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHR 906

Query: 585 RAGRSYVLDELAQKMRFSG 603
            AG +  +  L Q M   G
Sbjct: 907 IAGNTEKVCHLFQDMVDQG 925



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 158/356 (44%), Gaps = 21/356 (5%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
            +PG   +  + +S+M  + +    E  +   E +   G+   + F   +       ++KK
Sbjct: 678  QPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLC--KQKK 735

Query: 298  AVAIFELMNKYK-FKAGVDT--INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
            A+   EL+ K+K F   + T   N L+  L    L   A+ LF ++K     P+  TY +
Sbjct: 736  ALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNL 795

Query: 354  LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            LL    +   + E  +V  EM  KG++   V +N ++ GL+K  +   AI L+  + ++G
Sbjct: 796  LLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQG 855

Query: 414  PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             SP                   Y  L+ G     R++   +L  EM E GC  +   YN 
Sbjct: 856  FSPT---------------PCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNI 900

Query: 474  LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            L+   +I    ++   ++++MV  G  P I +Y +I+ +  + G    G   + +++  G
Sbjct: 901  LLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMG 960

Query: 534  CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              PD  +Y +LI GL    R  EA     EM +KG+   +  YN     L +AG++
Sbjct: 961  LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKA 1016



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N LL+ +G+S +  E  L   +  HR  +     TY  ++ G  + + L +A  ++  
Sbjct: 792  TYNLLLDAMGKS-MRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYN 850

Query: 374  MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
            ++ +GF P    +  +L+GLLK G+  DA  LF  M   G               CK N 
Sbjct: 851  LMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG---------------CKANC 895

Query: 434  AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             +Y  L+ G       + V  L ++M ++G  PD  +Y  +I  +      ++ +  +++
Sbjct: 896  TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQ 955

Query: 494  MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
            ++  G +P + TYN+++    ++   E    +++EM ++G  P+  +Y  LI  L    +
Sbjct: 956  LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGK 1015

Query: 554  SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            + EA K  EE+L KG K  V  YN      S +G +
Sbjct: 1016 AAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGST 1051



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 162/400 (40%), Gaps = 70/400 (17%)

Query: 216 DVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSIL-GRARQFETMVSMLEEMG 272
           DV+   R A  PA     F  A  KP  AH + + N M+ ++ G  R        + +M 
Sbjct: 59  DVIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGR--------VGDMA 110

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           E                           +F++M +   KA V T   +   LG     + 
Sbjct: 111 E---------------------------VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRS 143

Query: 333 AQLLFDKLK------HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           A +    +K      + +T N   Y ++  G+ R     EA  V+  M+  G  P V  +
Sbjct: 144 APVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDR-----EALEVYRVMMVDGVVPSVRTY 198

Query: 387 NIMLEGLLKIGKRSDA---IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           ++++   +  GKR D    + L   M+A G  PNV SYTI I                  
Sbjct: 199 SVLM---VAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVL--------------- 240

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G  +R D  Y +L +ME  GC PD +T+  LI+++       +A  ++ +M +S  KP  
Sbjct: 241 GQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDR 300

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY  ++  +   G+ +   ++W+ M   G   +  +YT +I  L    R  EA +  +E
Sbjct: 301 VTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDE 360

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           M +KG+      YN   +   +A R     EL + M   G
Sbjct: 361 MKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG 400



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 145/347 (41%), Gaps = 57/347 (16%)

Query: 240 GFAHNSRTYNSMMSILGR-ARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           G+  N   Y +++  L +  R FE +  M +EM +KG++  + ++   ++ F  A     
Sbjct: 330 GYNDNVVAYTAVIDALCQVGRVFEAL-EMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 388

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ +F+ M+                                   H   PN  T+ + +  
Sbjct: 389 ALELFKHMDI----------------------------------HGPKPNGYTHVLFINY 414

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +    ++A + +  M  KG  PDVVA N +L GL K G+   A ++F  +KA G SP+
Sbjct: 415 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 474

Query: 418 VRSYTIMI------WKF--------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT+MI       KF              C  +      LI       R D  + +  
Sbjct: 475 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFY 534

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +++E    P   TYN L+  +  +    E + + +EM  S + P + TYN I+    + G
Sbjct: 535 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 594

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                  +   M  +GC PD +SY  +I GL+ ++R  EA+    +M
Sbjct: 595 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 641


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G+   +R Y +++ +  R ++ E    ML EM + GL+    T    +NA+        A
Sbjct: 260 GWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGA 319

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           V +FE M     +  V T N +++         +A  L D+++     P++ TY +L+ G
Sbjct: 320 VRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRG 379

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C   ++  A R+   M   G   D   +N++++ L K GK  +A  LF+ ++ +G  PN
Sbjct: 380 QCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN 439

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             ++  +I   CK                 + D+    L++M   GC PD  TY+  I+ 
Sbjct: 440 SVTFNTVINGLCKGG---------------KFDVACTFLEKMVSAGCAPDTYTYSPFIEN 484

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   K   E +    EM++   KP+   Y +++   F+  NY +  ++W +M+  GC PD
Sbjct: 485 LCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPD 544

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +YT  +    ++ R  EA   + EM + G+    + YN      +  G++
Sbjct: 545 VVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKT 596



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 182/399 (45%), Gaps = 35/399 (8%)

Query: 210 SHNLVVDVLER---FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           ++N ++  L R    RHA+R        +G +P    ++ T+NS++    R +Q +    
Sbjct: 131 TYNALIRALCRRADLRHAQR-YLSLMVRSGWRP----DAFTFNSLILGYCRTQQLDVAQD 185

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           + ++M  +G      ++   +  F       +A+ +F  + +      + T   L++ L 
Sbjct: 186 LFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLC 241

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++  +E   +  K+K   + P    Y  L+  WCR +   EA ++ NEM D G  P  V
Sbjct: 242 DARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAV 301

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
               ++    + G+ S A+++FE MK KG  PNV +Y  M+  FC     VY  +     
Sbjct: 302 TCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNV-GKVYKAMA---- 356

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                     LL +M E G  PD +TYN LI+   I    + A R+ + M  +G     +
Sbjct: 357 ----------LLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQY 406

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN+++ +  +TG  +    ++D +  RG  P+  ++  +I GL    +   A  +LE+M
Sbjct: 407 TYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKM 466

Query: 565 LEKGMKAPVLDYNKFAADL-----SRAGRSYVLDELAQK 598
           +  G       Y+ F  +L     SR G S++ DE+ QK
Sbjct: 467 VSAGCAPDTYTYSPFIENLCKTKGSREGLSFI-DEMLQK 504



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 21/290 (7%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT--TYTVLLGGWCRVKNLMEAGRVWNE 373
           T   LL +  R  L      LF  + H   P  T  TY  L+   CR  +L  A R  + 
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M+  G++PD    N ++ G  +  +   A  LF+ M  +G S               Q+A
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFS---------------QDA 199

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  LI GF    R+D   +L +E+E+    PD  T+ AL+K +   +  +E + + ++
Sbjct: 200 VSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQK 255

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M   G++P    Y  ++  + +    E   K+ +EM   G  P   + T ++     + R
Sbjct: 256 MKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGR 315

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              A +  E M  KG +  V  YN         G+ Y    L  +MR  G
Sbjct: 316 MSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECG 365



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 152/401 (37%), Gaps = 76/401 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G A +  TYN ++  L +  + +   S+ + +  +G+     TF   +N      +   A
Sbjct: 400 GLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVA 459

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
               E M          T +  +ENL ++K  +E     D+ L+    P+   YT+++  
Sbjct: 460 CTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDR 519

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVV--------------------------------- 384
             + +N   A R+W +M+  G  PDVV                                 
Sbjct: 520 LFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVD 579

Query: 385 --AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY-------------------TI 423
             A+N +++G   IGK   A+ + + M      PN  ++                   T 
Sbjct: 580 AMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTT 639

Query: 424 MIWK------------FCKQN-----AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            +WK              K+N     A  Y  ++ GF   RR+D V  L+  M+E   P 
Sbjct: 640 SVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPL 699

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           +   Y +L+      +M  +A  +   M+  GF P + +Y  ++  +   G  +  ++++
Sbjct: 700 NEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIF 759

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQ---DRSGEAYKYLEEM 564
             +  +    D+  + ++I GLI Q   D   +    LE+M
Sbjct: 760 RGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQM 800



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 16/184 (8%)

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYT 352
           E      +FELM K    +       +LE     +   E   L   +K    P N   YT
Sbjct: 646 ELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYT 705

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+  +C+++   +A  +   MI  GF P+++++  +L G    G+   A ++F  ++  
Sbjct: 706 SLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLR-- 763

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                        WK    +  V+  +I G   +   D+ +D++  +E+  C P   TY 
Sbjct: 764 -------------WKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYA 810

Query: 473 ALIK 476
            L +
Sbjct: 811 MLTE 814


>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
 gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
          Length = 504

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 166/356 (46%), Gaps = 18/356 (5%)

Query: 215 VDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           VD + R R+ +  A++FF WAG + G+ H +  YN +M +     + + M  + EEM +K
Sbjct: 150 VDCVNRERYPKL-AYKFFIWAGQQEGYQHGTSMYNLVMKVFAECGEVKAMWRLFEEMMDK 208

Query: 275 GL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           GL +S  TF + + A   A  R++ V  F   + + ++   +  N +L  L   +     
Sbjct: 209 GLPVSSRTFHLLICASGKAGLRRRLVEGFIKSSTFNYRPFRNAFNAILHTLLTIEQYSLI 268

Query: 334 QLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           + + +K+    ++P++ TY V++     +  L +  R+ +EM   G  PD+  +N++L  
Sbjct: 269 EWVHEKMILEGYSPDVLTYNVVMRAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHV 328

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L K  K   A+ L   M   G  PNV  +T                LI G G    ++  
Sbjct: 329 LGKGDKPLAALNLLNYMSDVGCVPNVLHFT---------------NLIDGLGRAGNLEAC 373

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
                EM ++GC PD + Y  +I         +EA R + +M+  G  P ++TYN +++ 
Sbjct: 374 KYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRG 433

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
               G ++    +  +M   GC P+ + Y+ L+  L S  +  +A   ++ M +KG
Sbjct: 434 LCTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIKYMTDKG 489


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 25/373 (6%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI-AMNAFAAAKERKK 297
           PG++H    ++ ++  L   +    +  ++E +  +     E   +  + A+A      +
Sbjct: 37  PGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQ 96

Query: 298 AVAIFELMNK-YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           A+ IF+ M++ +  + G+ + N LL  L  S    EA+  F   +    +PNL TY +L+
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR K   +A  + N M ++GF PDV ++  ++  L K G  SDA+KLF+ M  +G +
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT 216

Query: 416 PNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYD 454
           P+V  Y I+I  F K+                     N   Y  +I G     + D  ++
Sbjct: 217 PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 276

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +   M++     D  TY+ LI  +      D A R+YKEM  +G  P +  YN ++  Y 
Sbjct: 277 IWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 336

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E   ++W  M + G C    SY +LI GL    +  EA    E + EK   A  +
Sbjct: 337 RAGRIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSM 395

Query: 575 DYNKFAADLSRAG 587
            Y      L + G
Sbjct: 396 TYGVLVHGLCKNG 408



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 183/420 (43%), Gaps = 61/420 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF+ +  +Y ++++ L +       + + +EM E+G+   +  + I ++ F    +   A
Sbjct: 179 GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 238

Query: 299 VAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
             I+E L+        + + N ++  L +     E+  ++ ++K +    +L TY+ L+ 
Sbjct: 239 SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIH 298

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C   NL  A RV+ EM + G  PDVV +N ML G L+ G+  + ++L++VM+ +G   
Sbjct: 299 GLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG-CR 357

Query: 417 NVRSYTIMI---------------WKF--------------------CKQ---------- 431
            V SY I+I               W+                     CK           
Sbjct: 358 TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 417

Query: 432 ----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
                     +   Y+ +I G     R+D V  +L +M + GC P+    NA+I   ++ 
Sbjct: 418 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            K+ D A+R +  MV  G  PT+ TYN ++    +   +     +  EM+ +G  P+  +
Sbjct: 478 SKLED-ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMIT 536

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y++L+ GL    +   A     + LEKG K  V  +N     L  +G+     +L  +M+
Sbjct: 537 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 151/328 (46%), Gaps = 16/328 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G + +   YN+M++   RA + E  + + + M ++G  ++ ++ I +       +  +A+
Sbjct: 320 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAI 379

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +I+EL+ +    A   T   L+  L ++  L K   +L +    R   +   Y+ ++ G 
Sbjct: 380 SIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGL 439

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR   L E   V ++M   G KP+    N ++ G ++  K  DA++ F  M +KG  P V
Sbjct: 440 CREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTV 499

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y                 LI G     R    Y L+KEM  +G  P+ +TY+ L+  +
Sbjct: 500 VTYNT---------------LINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGL 544

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              K  D A+ ++ + +  GFKP +  +N+I+     +G  E   +++ EM +R C P+ 
Sbjct: 545 CQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNL 604

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            ++  L+ G         A K  + +L+
Sbjct: 605 VTHNTLMEGFYKVRDFERASKIWDHILQ 632



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           GD   FA     Y+SM++ L R  + + +  +L++M + G   +       +N F  A +
Sbjct: 425 GDLDTFA-----YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASK 479

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
            + A+  F  M        V T N L+  L +++   EA  L  ++ H+ + PN+ TY++
Sbjct: 480 LEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSL 539

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G C+ K L  A  +W + ++KGFKPDV  HNI++ GL   GK  DA++L+  MK + 
Sbjct: 540 LMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK 599

Query: 414 PSPNVRSYTIMIWKFCK 430
             PN+ ++  ++  F K
Sbjct: 600 CVPNLVTHNTLMEGFYK 616


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 187/432 (43%), Gaps = 30/432 (6%)

Query: 188 IDELFSLDRNMEAVLDECGINLSHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHN 244
           +D L ++ +     LD    N +  ++V V     RFR      FR     G  P    N
Sbjct: 204 VDALLTVMQGQGFCLD----NATCTVIVRVFCQKGRFRDVSE-LFRRMLEMGTPP----N 254

Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF- 302
              Y + +  L +    +    +LEEM  KGL  ++ T    +N        ++A  +F 
Sbjct: 255 VVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFL 314

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           +L+    +K  V T   ++    +  KL +   LL   ++    PN  TYT L+ G C+ 
Sbjct: 315 KLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKE 374

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            +   A  + N+M  +GF+P++  +N +++GL K GK  +A K+  +   +G   +  +Y
Sbjct: 375 GSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTY 434

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           T+MI + CKQ    Y                 DL   M E GC PD  TY  LI     Q
Sbjct: 435 TVMITEHCKQGHITY---------------ALDLFNRMAENGCHPDIHTYTTLIARYCQQ 479

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           +  +E+ +++ + +     PT  TY  ++  Y + G      +V++ M++ GC  D  +Y
Sbjct: 480 RQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITY 539

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
             LI GL  + R  EA    E ML+K +    +     A +  R  ++ V   +  ++  
Sbjct: 540 GALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDK 599

Query: 602 SGKFEVSNVLAR 613
             K    NVL R
Sbjct: 600 RRKNHTVNVLVR 611



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 123/278 (44%), Gaps = 17/278 (6%)

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAH 386
           +LP+ A ++F+   H     + T   +L       +   A +V++ M+ +G   PD  + 
Sbjct: 129 RLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRGGLLPDARSF 188

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
             ++ G  + G+  +   L  VM+ +G              FC  NA   T ++  F  +
Sbjct: 189 RALIVGCCRDGRMEEVDALLTVMQGQG--------------FCLDNATC-TVIVRVFCQK 233

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R   V +L + M E G PP+ + Y A I  +  +    +A  + +EMV  G KP ++T+
Sbjct: 234 GRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTH 293

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
             ++    + G  E   +++ ++I+     P+ ++YTV+IGG   + +   A   L  M+
Sbjct: 294 TSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 353

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           E+G+      Y    +   + G      EL  KMR  G
Sbjct: 354 EQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREG 391


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 165/371 (44%), Gaps = 25/371 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TYN ++       +++ +V MLE+M  +GL     T+   +N   A  E    
Sbjct: 237 GVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMH-- 294

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
            +  +LM +          N       +  +  +A  +F+K++ H  +PN+  Y  L+  
Sbjct: 295 -SFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDA 353

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++  + +A   +N+MI++G  P++V  N ++ GL  + K   A +L   M  +G  PN
Sbjct: 354 LCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPN 413

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
              +  +I   C                    + +A  YT LI+G+    R D    +  
Sbjct: 414 AVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFD 473

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   G  P  +TYN L+         D+A  +++EM+R G  P + TYN I+   FQT 
Sbjct: 474 GMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTK 533

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +   ++++  MI  G   D  +Y +++ GL   +   EA+K  + +  KG++  ++ + 
Sbjct: 534 RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT 593

Query: 578 KFAADLSRAGR 588
                L + GR
Sbjct: 594 IMIGALLKGGR 604



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 174/394 (44%), Gaps = 25/394 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TY S+++ L    +   M S L+ M E GL      F I  +A+A      KA
Sbjct: 272 GLKPDCYTYGSLLNYLCALSE---MHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKA 328

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + IF  M ++     V     L++ L +     +A++ F+++ +   TPN+  +  L+ G
Sbjct: 329 MDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYG 388

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C V     A  +  EM+D+G  P+ V  N ++  L  +G+  +  +L ++M+  G  P+
Sbjct: 389 LCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPD 448

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             SYT +I  +C                          Y  L+ G+ +  R+D  Y L +
Sbjct: 449 AFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFR 508

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  +G  P  +TYN ++  +   K   EA  +Y  M+ SG K  I+TYN+I+    ++ 
Sbjct: 509 EMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSN 568

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   K++  +  +G   +  ++T++IG L+   R  +A      +   G+   V+ Y 
Sbjct: 569 CVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYR 628

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
             A +L   G     D L   M  +G    S +L
Sbjct: 629 LVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQML 662



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 148/365 (40%), Gaps = 26/365 (7%)

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
            E +  M  + G     ++ T+   ++    A+   +A  +F+ M     K   DT NCL
Sbjct: 189 LELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCL 248

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +         KE   + +K+  R   P+  TY  LL   C    L E     + M++ G 
Sbjct: 249 IHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCA---LSEMHSFLDLMVENGL 305

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------- 430
            PD    NI      K G    A+ +F  M+  G SPNV +Y  +I   CK         
Sbjct: 306 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 365

Query: 431 -----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLM 478
                       N  V+  L+ G     + +   +L+ EM ++G  P+ + +N LI  L 
Sbjct: 366 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC 425

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
            + ++  E  R+   M   G +P   +Y  ++  Y   G  +   KV+D M+  G  P +
Sbjct: 426 NVGRVM-EGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTE 484

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y  L+ G  S  R  +AY    EML KG+   V+ YN     L +  R     EL   
Sbjct: 485 VTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLN 544

Query: 599 MRFSG 603
           M  SG
Sbjct: 545 MINSG 549



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 130/267 (48%), Gaps = 26/267 (9%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL---KIGKR 399
           +  PN  TY++L+G  CR+  L  +   +  ++  G++ + +  N +L+GL    ++G+ 
Sbjct: 93  KVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEA 152

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            D   L + M   G +P+  SY+I++  FC +N               R +   +LL+ M
Sbjct: 153 MDV--LLQRMPELGCTPDTVSYSILLKGFCNEN---------------RAEEALELLRMM 195

Query: 460 EE---RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
                R CPP+ +TY  +I  +   ++ D A  ++++M+ +G KP   TYN ++  Y   
Sbjct: 196 ANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSI 255

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G ++   ++ ++M  RG  PD  +Y  L+  L +     E + +L+ M+E G+      +
Sbjct: 256 GKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALS---EMHSFLDLMVENGLSPDHHIF 312

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           N F +  ++ G      ++  KMR  G
Sbjct: 313 NIFFSAYAKCGMIDKAMDIFNKMRQHG 339



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 17/239 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ +Y  ++S    A + +    + + M   GL   E T+   ++ + +A     A
Sbjct: 444 GVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDA 503

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGG 357
             +F  M +     GV T N +L  L ++K   EA+ L+  + +  T  ++ TY ++L G
Sbjct: 504 YCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNG 563

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA +++  +  KG + +++   IM+  LLK G++ DA+ LF  + A G  PN
Sbjct: 564 LCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPN 623

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           V +Y ++     ++            G+    D    L   ME+ G  P+    NAL++
Sbjct: 624 VVTYRLVAENLIEE------------GSLEEFD---SLFSAMEKNGTAPNSQMLNALVR 667


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 154/327 (47%), Gaps = 16/327 (4%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKE 332
           + L S+  F   ++  A +K     +++F  M        + + N ++  L R S+    
Sbjct: 5   RPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIA 64

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
             ++   +K  + P++ T + L+ G+C+   + +A  + ++M + GF+PDVV +N +++G
Sbjct: 65  LSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDG 124

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
             KIG  +DA++LF+ M+  G                + +A  Y  L+ G     R    
Sbjct: 125 SCKIGLVNDAVELFDRMERDG---------------VRADAVTYNSLVAGLCCSGRWSDA 169

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L+++M  R   P+ +T+ A+I +   +    EA+++Y+EM R    P + TYN ++  
Sbjct: 170 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 229

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
               G  +  +++ D M+ +GC PD  +Y  LI G     R  E  K   EM ++G+   
Sbjct: 230 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 289

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKM 599
            + YN       +AGR     E+  +M
Sbjct: 290 TITYNTIIQGYFQAGRPDAAQEIFSRM 316



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           ++ ++S + +++ ++ ++S+   M   G+   + ++ I +N          A+++   M 
Sbjct: 13  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 72

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K+ ++  V T++ L+    +     +A  L  K++   F P++  Y  ++ G C++  + 
Sbjct: 73  KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 132

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  +++ M   G + D V +N ++ GL   G+ SDA +L   M  +   PNV ++T +I
Sbjct: 133 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 192

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F K+                    +   Y  LI G     R+D    +L  M  +GC 
Sbjct: 193 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 252

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN LI      K  DE  ++++EM + G      TYN I++ YFQ G  +  +++
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +  M  R   P+  +Y++L+ GL    R  +A    E M +  ++  +  YN     + +
Sbjct: 313 FSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCK 369

Query: 586 AG 587
            G
Sbjct: 370 IG 371



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 169/386 (43%), Gaps = 25/386 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  H+  +YN +++ L R  +F   +S++ +M + G    + T    +N F        A
Sbjct: 40  GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 99

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + +   M +  F+  V   N +++   +  L  +A  LFD++ +     +  TY  L+ G
Sbjct: 100 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 159

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+  +M+ +   P+V+    +++  +K GK S+A+KL+E M  +   P+
Sbjct: 160 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPD 219

Query: 418 VRSYT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y                     +M+ K C  +   Y  LI GF   +R+D    L +
Sbjct: 220 VFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFR 279

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   D +TYN +I+       PD A  I+  M     +P I TY++++       
Sbjct: 280 EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNW 336

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    +++ M +     D  +Y ++I G+       +A+     +  KG+K  V+ Y 
Sbjct: 337 RVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYT 396

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
              +   R  +    D L +KM+  G
Sbjct: 397 TMISGFCRKRQWDKSDLLYRKMQEDG 422



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 146/303 (48%), Gaps = 22/303 (7%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           ++ G   ++ TYNS+++ L  + ++     ++ +M  + ++ ++ TF   ++ F    + 
Sbjct: 142 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 201

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            +A+ ++E M +      V T N L+  L       EA+ + D +  +   P++ TY  L
Sbjct: 202 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 261

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+ K + E  +++ EM  +G   D + +N +++G  + G+   A ++F  M ++  
Sbjct: 262 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR-- 319

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            PN+R+Y+I+++  C  N  V   L+              L + M++     D  TYN +
Sbjct: 320 -PNIRTYSILLYGLC-MNWRVEKALV--------------LFENMQKSEIELDITTYNIV 363

Query: 475 IKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           I  M KI  + D A  +++ +   G KP + +Y  ++  + +   ++    ++ +M   G
Sbjct: 364 IHGMCKIGNVED-AWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422

Query: 534 CCP 536
             P
Sbjct: 423 LLP 425


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 26/377 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M+++L   G+ ++    +  +E +G K   ++ ++   ++ +++    + A  I +
Sbjct: 251 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP--NVVSYNTIIHGYSSRGNIEGARRILD 308

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVK 362
            M     +    T   L+  + +    +EA  LFDK+      PN  TY  L+ G+C   
Sbjct: 309 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 368

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L  A    +EM+ KG  P V  +N+++  L   G+  +A  + + M+ KG  P+  +Y 
Sbjct: 369 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN 428

Query: 423 IMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  + +   A                     YT LI     R RM    DL +++ ++
Sbjct: 429 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ 488

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NA++         + A  + KEM R    P   T+N +M+   + G  E  
Sbjct: 489 GVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA 548

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R + DEM RRG  PD  SY  LI G   +    +A++  +EML  G    +L YN     
Sbjct: 549 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 608

Query: 583 LSRAGRSYVLDELAQKM 599
           L +     + +EL ++M
Sbjct: 609 LCKNQEGDLAEELLKEM 625



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 30/401 (7%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+V V    R A   AF+ F    +K G      T N M+S+  +  + E    +  EM
Sbjct: 183 DLLVRVCCELRRADE-AFKCFYMMKEK-GIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 272 GEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
               + S + TF I +N      + KKA      M    FK  V + N ++         
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           + A+ + D ++ +   P+  TY  L+ G C+   L EA  ++++M++ G  P+ V +N +
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL 360

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           ++G    G    A    + M  KG  P+V +Y +++     +                  
Sbjct: 361 IDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 420

Query: 432 --NAAVYTCLITGF---GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
             +A  Y  LI G+   GN ++    +DL  EM  +G  P  +TY +LI ++  +    E
Sbjct: 421 IPDAITYNILINGYSRCGNAKK---AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKE 477

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  ++++++  G  P +  +N ++  +   GN E    +  EM R+   PD+ ++  L+ 
Sbjct: 478 ADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 537

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           G   + +  EA   L+EM  +G+K   + YN   +   R G
Sbjct: 538 GRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRG 578



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +S TY S++S + +  + E    + ++M E GL+ +  T+   ++ +    + ++A
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            +  + M K      V T N L+  L       EA  +  +++ +   P+  TY +L+ G
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R  N  +A  + NEM+ KG +P  V +  ++  L +  +  +A  LFE +  +G SP+
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V  +  M+   C              GN  R    + LLKEM+ +  PPD +T+N L++ 
Sbjct: 494 VIMFNAMVDGHCAN------------GNVER---AFMLLKEMDRKSVPPDEVTFNTLMQG 538

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +   +EA  +  EM R G KP   +YN ++  Y + G+ +   +V DEM+  G  P 
Sbjct: 539 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 598

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +Y  LI  L        A + L+EM+ KG+
Sbjct: 599 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 630



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 16/324 (4%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            F + +      +   +A   F +M +      ++T N +L    +    + A +L+ ++
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            + R +  + T+ +++   C+   L +A      M   GFKP+VV++N ++ G    G  
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
             A ++ + M+ KG  P+  SYT             Y  LI+G     R++    L  +M
Sbjct: 301 EGARRILDAMRVKGIEPD--SYT-------------YGSLISGMCKEGRLEEASGLFDKM 345

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            E G  P+ +TYN LI     +   + A     EMV+ G  P++ TYN+++ + F  G  
Sbjct: 346 VEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 405

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                +  EM ++G  PD  +Y +LI G      + +A+    EML KG++   + Y   
Sbjct: 406 GEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSL 465

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
              LSR  R    D+L +K+   G
Sbjct: 466 IYVLSRRNRMKEADDLFEKILDQG 489



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 34/300 (11%)

Query: 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           L R +L  ++ ++FD              +L+   C ++   EA + +  M +KG  P +
Sbjct: 169 LSRDRLSVKSSIVFD--------------LLVRVCCELRRADEAFKCFYMMKEKGIVPKI 214

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
              N ML   LK+ +   A  L+  M     S  V ++ IM+   CK+            
Sbjct: 215 ETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGF 274

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   N   Y  +I G+ +R  ++    +L  M  +G  PD  TY +LI  M  +  
Sbjct: 275 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 334

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA  ++ +MV  G  P   TYN ++  Y   G+ E      DEM+++G  P  ++Y +
Sbjct: 335 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 394

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+  L  + R GEA   ++EM +KG+    + YN      SR G +    +L  +M   G
Sbjct: 395 LVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKG 454



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 62/152 (40%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++D L    +R      + ++ L+++    +  DEA + +  M   G  P I T N ++ 
Sbjct: 163 LFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLS 222

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + +    EM   ++ EM R        ++ +++  L  + +  +A +++  M   G K 
Sbjct: 223 LFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP 282

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V+ YN      S  G       +   MR  G
Sbjct: 283 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 314


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 201/443 (45%), Gaps = 30/443 (6%)

Query: 169 SVSYKSTADPREIER-----VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRH 223
           SVS       REI R     + KV+  LF    ++ A       NL+ ++  +V++RF  
Sbjct: 29  SVSRARPFCDREIIRHSEAWLVKVVCTLFFRSHSLNACFGYLSRNLNPSIAFEVIKRFSD 88

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETF 282
                 +FF ++       H   TY+ +M  L +    ++   + + M   G+L      
Sbjct: 89  PLL-GLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSIL 147

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLK 341
           ++ ++++A   +   A      ++ Y  K      N LL  L +  L  EA LLF + L+
Sbjct: 148 ELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLE 207

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
             F P++ ++ +L+ G CR+  + +A   +  M + G  PD+V++N ++ G  ++ + S 
Sbjct: 208 PYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISK 267

Query: 402 AIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
              L  E M  KG SP+V +YT +I  +CK             G+   M    +L  EM 
Sbjct: 268 GHDLLKEDMLIKGVSPDVITYTSIISGYCK------------LGD---MKAASELFDEMV 312

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             G  P+  T+N LI    K+  M   A+ +Y++M+  G  P + T+  ++  Y + G  
Sbjct: 313 SSGIKPNDFTFNVLIDGFGKVGNM-RSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEV 371

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             G K+W+EM  R   P+  +Y VLI  L  ++R  EA  +L  +    +      YN  
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431

Query: 580 AADLSRAGR----SYVLDELAQK 598
                +AG+    ++++ E+ +K
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEK 454



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 157/351 (44%), Gaps = 18/351 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +   YN+++++L +    +  V +  E  E   +  + +F I +       E  KA
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLF-DKLKHRFTPNLTTYTVLLG 356
              F+ M  +     + + N L+    R +++ K   LL  D L    +P++ TYT ++ 
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C++ ++  A  +++EM+  G KP+    N++++G  K+G    A+ ++E M   G  P
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLP 353

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V ++T +I  +C++                 ++    L +EM+ R   P+  TY  LI 
Sbjct: 354 DVVTFTSLIDGYCREG---------------EVNQGLKLWEEMKVRNLSPNVYTYAVLIN 398

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  +    EA    + +  S   P    YN ++  + + G  +    +  EM  + C P
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           D  ++T+LI G   + R  EA     +M+E       +  N   + L +AG
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAG 509



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 16/220 (7%)

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +++++  L K+G    A  +F+ M++ G  P+               +++   L++ + 
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPD---------------SSILELLVSSYA 155

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              ++D   + L E+   G       YN L+ ++  Q + DEAV +++E +   F P ++
Sbjct: 156 RMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVY 215

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL-EE 563
           ++N++++   + G  +   + +  M   GC PD  SY  LI G    +   + +  L E+
Sbjct: 216 SFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKED 275

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ML KG+   V+ Y    +   + G      EL  +M  SG
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 315



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 18/258 (6%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
             TY +L+   C+V     A  V++ M   G  PD     +++    ++GK   A     
Sbjct: 109 FNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLN 168

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                     V  Y I +  F      VY  L+     +  +D    L +E  E    PD
Sbjct: 169 ---------EVHCYGIKVSPF------VYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPD 213

Query: 468 GLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
             ++N LI+ L +I ++ D+A   ++ M   G  P I +YN ++  + +      G  + 
Sbjct: 214 VYSFNILIRGLCRIGEI-DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLL 272

Query: 527 DE-MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            E M+ +G  PD  +YT +I G         A +  +EM+  G+K     +N       +
Sbjct: 273 KEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK 332

Query: 586 AGRSYVLDELAQKMRFSG 603
            G       + +KM   G
Sbjct: 333 VGNMRSAMVMYEKMLLLG 350


>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like [Glycine max]
          Length = 480

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 170/388 (43%), Gaps = 34/388 (8%)

Query: 201 VLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           VL E  + LS  LV +VL         E      + A++FF W   + G+ H    Y+ +
Sbjct: 103 VLGELHVRLSGLLVREVLFGILKHINCENKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLV 162

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           M+I     +F+ +  +++EM EKGL  +  TF I +     A   K  V  F     + F
Sbjct: 163 MNIYAECEEFKALWRLVDEMVEKGLPATARTFNILIRTCGEAGLAKSLVERFIKSKTFNF 222

Query: 311 KAGVDTINCLLENL---GRSKLPKEA--QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           +    + N +L  L    + KL +    QLL D     F+ ++ TY +++    R+  L 
Sbjct: 223 RPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDG----FSSDILTYNIVMYAKYRLGKLD 278

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +  R+ +EM   GF PD    NI+L  L K  K   A+ L   M+  G  P V  +T   
Sbjct: 279 QFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTT-- 336

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                        LI G      +D       EM + GC PD + Y  +I    +    +
Sbjct: 337 -------------LIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGEIE 383

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           +A+++Y+ M+     P + TYN I++     G ++    +  EM  +GC P+   Y  L 
Sbjct: 384 KALKMYQYMISREQVPNVFTYNSIIQGLCMAGKFDEACSMLKEMKTKGCSPNSFVYNTLA 443

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPV 573
             L +  ++ +A++ + +M EKG  A +
Sbjct: 444 SCLRNAGKTADAHEVIRQMTEKGKYADI 471


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 201/443 (45%), Gaps = 30/443 (6%)

Query: 169 SVSYKSTADPREIER-----VCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRH 223
           SVS       REI R     + KV+  LF    ++ A       NL+ ++  +V++RF  
Sbjct: 29  SVSRARPFCDREIIRHSEAWLVKVVCTLFFRSHSLNACFGYLSRNLNPSIAFEVIKRFSD 88

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETF 282
                 +FF ++       H   TY+ +M  L +    ++   + + M   G+L      
Sbjct: 89  PLL-GLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSIL 147

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLK 341
           ++ ++++A   +   A      ++ Y  K      N LL  L +  L  EA LLF + L+
Sbjct: 148 ELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLE 207

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
             F P++ ++ +L+ G CR+  + +A   +  M + G  PD+V++N ++ G  ++ + S 
Sbjct: 208 PYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISK 267

Query: 402 AIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
              L  E M  KG SP+V +YT +I  +CK             G+   M    +L  EM 
Sbjct: 268 GHDLLKEDMLIKGVSPDVITYTSIISGYCK------------LGD---MKAASELFDEMV 312

Query: 461 ERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             G  P+  T+N LI    K+  M   A+ +Y++M+  G  P + T+  ++  Y + G  
Sbjct: 313 SSGIKPNDFTFNVLIDGFGKVGNM-RSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEV 371

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             G K+W+EM  R   P+  +Y VLI  L  ++R  EA  +L  +    +      YN  
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431

Query: 580 AADLSRAGR----SYVLDELAQK 598
                +AG+    ++++ E+ +K
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEK 454



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 157/351 (44%), Gaps = 18/351 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +   YN+++++L +    +  V +  E  E   +  + +F I +       E  KA
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLL-FDKLKHRFTPNLTTYTVLLG 356
              F+ M  +     + + N L+    R +++ K   LL  D L    +P++ TYT ++ 
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C++ ++  A  +++EM+  G KP+    N++++G  K+G    A+ ++E M   G  P
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLP 353

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V ++T +I  +C++                 ++    L +EM+ R   P+  TY  LI 
Sbjct: 354 DVVTFTSLIDGYCREG---------------EVNQGLKLWEEMKVRNLSPNVYTYAVLIN 398

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +  +    EA    + +  S   P    YN ++  + + G  +    +  EM  + C P
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           D  ++T+LI G   + R  EA     +M+E       +  N   + L +AG
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAG 509



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 16/220 (7%)

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +++++  L K+G    A  +F+ M++ G  P+               +++   L++ + 
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPD---------------SSILELLVSSYA 155

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              ++D   + L E+   G       YN L+ ++  Q + DEAV +++E +   F P ++
Sbjct: 156 RMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVY 215

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL-EE 563
           ++N++++   + G  +   + +  M   GC PD  SY  LI G    +   + +  L E+
Sbjct: 216 SFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKED 275

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           ML KG+   V+ Y    +   + G      EL  +M  SG
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 315



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 18/258 (6%)

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
             TY +L+   C+V     A  V++ M   G  PD     +++    ++GK   A     
Sbjct: 109 FNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLN 168

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                     V  Y I +  F      VY  L+     +  +D    L +E  E    PD
Sbjct: 169 ---------EVHCYGIKVSPF------VYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPD 213

Query: 468 GLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
             ++N LI+ L +I ++ D+A   ++ M   G  P I +YN ++  + +      G  + 
Sbjct: 214 VYSFNILIRGLCRIGEI-DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLL 272

Query: 527 DE-MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            E M+ +G  PD  +YT +I G         A +  +EM+  G+K     +N       +
Sbjct: 273 KEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK 332

Query: 586 AGRSYVLDELAQKMRFSG 603
            G       + +KM   G
Sbjct: 333 VGNMRSAMVMYEKMLLLG 350


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 181/423 (42%), Gaps = 67/423 (15%)

Query: 212 NLVV--DVLERFRHARRPAFRFFCWAGDK---PGFAHNSRTYNSMMSILGRARQFETMVS 266
           NLVV  D +  F  AR  + R+ C  GD+    G   +  TYN+ +S L +A + +  + 
Sbjct: 149 NLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLE 208

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           MLEEM   G+   + TF   ++    A     A  +F+ M +        T + +L+NL 
Sbjct: 209 MLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLS 268

Query: 326 RS--------------------------------------KLPKEAQLLFDKLKHRFTPN 347
           R+                                      K P    +L   ++    PN
Sbjct: 269 RANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPN 328

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           L +Y  ++ G C+  N+ +A ++  +M+D G  KPDV+  N ++ G  K G+ S A +L 
Sbjct: 329 LLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLL 388

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG---FGNRRRMDIVYDLLKEMEERG 463
             MKAK                C  +   Y  LI G   FG+ ++  +   LL+EM+  G
Sbjct: 389 IEMKAK--------------NICVPDVVTYNTLIDGQSKFGSLKQAKL---LLQEMQAVG 431

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P+ +TY ALI       M +EA  ++ EM   G  P I TYN ++ ++ + G      
Sbjct: 432 CKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAE 491

Query: 524 KVWDEMIRRG--CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
            V+ ++  +   C PD  +Y +LI G    + + +    L+EM  +G       YN   A
Sbjct: 492 GVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIA 551

Query: 582 DLS 584
            L+
Sbjct: 552 KLA 554



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 20/295 (6%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
           + A V T   L++ L +S     AQ L  K+      PN+ TYT L+ G C+ +   +A 
Sbjct: 6   YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 65

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY-TIMIWK 427
           +    M+  G +PD+V +N ++ GL    +  DA  + + +   G +PN  +Y T++IW 
Sbjct: 66  QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWN 125

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY-NALIKLMKIQKMPDE 486
            C+               RRR+D    L++EM  RG   + + Y + +    + +     
Sbjct: 126 -CR---------------RRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSR 169

Query: 487 -AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
              R   EM+ SG  P + TYN  +    + G  + G ++ +EM R G  PD  ++  +I
Sbjct: 170 YECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSII 229

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
            GL   +R  +A++  + MLE+G     L Y+    +LSRA R   +DE+ + M+
Sbjct: 230 SGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQ 284



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 150/323 (46%), Gaps = 27/323 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERK 296
           K G      T+N+ +  L R+ +F    ++L  M E G L ++ ++   ++    +    
Sbjct: 287 KAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVD 346

Query: 297 KAVAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFD-KLKHRFTPNLTTYTV 353
            A  +  ++++    K  V   N L+    ++ +L +  QLL + K K+   P++ TY  
Sbjct: 347 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNT 406

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G  +  +L +A  +  EM   G KP+VV +  ++ G  K G   +A  LF+ M AKG
Sbjct: 407 LIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKG 466

Query: 414 PSPNVRSYTIMIWKF----------------------CKQNAAVYTCLITGFGNRRRMDI 451
             P++ +Y  ++  F                      C  +A  Y  LI G+      + 
Sbjct: 467 CFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQ 526

Query: 452 VYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
              LL+EM  RG   D  TYN LI KL + +++P +A+ +Y++M+     P+   +N ++
Sbjct: 527 GLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLV 586

Query: 511 KSYFQTGNYEMGRKVWDEMIRRG 533
           + + +TG+    R +  EM  +G
Sbjct: 587 RLFLRTGDVNSARSMVQEMNEKG 609



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 153/351 (43%), Gaps = 25/351 (7%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLL 336
           S+ T+   ++    + +   A A+ + M        V T   L++ L +++ P +A Q +
Sbjct: 9   SVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTV 68

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
              L+    P+L TY  L+ G C    + +AG V  E++  GF P+ + ++ ++    + 
Sbjct: 69  KRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRR 128

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------------NAA 434
            +   A  L   M  +G   N+  Y   I+ FC+                       +  
Sbjct: 129 RRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVV 188

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            Y   I+G     ++D   ++L+EM+  G PPD +T+ ++I  +      D+A +++K M
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM 248

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM--IRRGCCPDDNSYTVLIGGLISQD 552
           +  G  P   TY++++ +  +    +   +V + M  ++ GC  +  ++   IG L    
Sbjct: 249 LERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSG 308

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +   A   L  M+E G    +L YN     L ++G      +L++KM  SG
Sbjct: 309 KFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSG 359



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 17/217 (7%)

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
           M   G+   VV +  +++GL K G    A  L + M   G +PNV +YT +I   CK   
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKA-- 58

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
                       RR  D +   +K M   GC PD +TYN+LI  + +    D+A  + +E
Sbjct: 59  ------------RRPHDAI-QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQE 105

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           +VR+GF P   TY+ ++    +    +  R +  EMI RG   +   Y   I G      
Sbjct: 106 LVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARC 165

Query: 554 SGEAYKYL--EEMLEKGMKAPVLDYNKFAADLSRAGR 588
               Y+    +EM+E G    V+ YN F + L +AG+
Sbjct: 166 QSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGK 202



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 114/236 (48%), Gaps = 22/236 (9%)

Query: 247 TYNSMM---SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           TYN+++   S  G  +Q + ++  ++ +G K   ++ T+   +N +A     ++A ++F+
Sbjct: 403 TYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKP--NVVTYAALINGYAKHGMYEEAESLFD 460

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCR 360
            M+       + T N +L    ++ +  +A+ ++ +LK++    +P+  TY +L+ G+CR
Sbjct: 461 EMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCR 520

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            ++  +   +  EM  +G+  D   +N+++             KL E  +   PS  +  
Sbjct: 521 AEDTEQGLTLLQEMTARGWSCDSYTYNVLIA------------KLAETEEV--PSKALAV 566

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           Y  M+ + C  +A+++  L+  F     ++    +++EM E+G   D     AL K
Sbjct: 567 YQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDASNLEALNK 622



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M  +G+  ++ TY  ++    ++G+ +  + +  +M   GC P+  +YT LI GL    R
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDELAQ 597
             +A + ++ ML  G +  ++ YN     L  A R      VL EL +
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVR 108


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 28/353 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAA-AKERKKAVAI 301
           ++  Y +++S L RA +F   V++   M   G+  ++ T+ + ++ ++  A   K+ +A+
Sbjct: 175 DASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLAL 234

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
            + M K        T N L+    R  L KEA  +FD+++   F P+  T   LL  + +
Sbjct: 235 VDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGK 294

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
            +   EA  V  EM   G  P VV +N ++   +K G   +A +L E M+ KG  P+V  
Sbjct: 295 ARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDV-- 352

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                          YT L++G     ++D       EM   GC P+  TYNALIKL  +
Sbjct: 353 -------------ITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGV 399

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
           +    E + ++ E+  +GF P + T+N ++  + Q G       V+ EM + G  P+ ++
Sbjct: 400 RGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDT 459

Query: 541 YTVLIG-----GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           Y  LI      GL   D++ E YK    M+E G+   +  YN   + L+R GR
Sbjct: 460 YVSLISSYSRCGLF--DQAMEIYK---RMIEAGIHPDISTYNAVLSALARGGR 507



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 23/313 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA----FAAAK 293
           K G   +  TYN+++S   R   ++    + +EM   G    E  K+ +N+    +  A+
Sbjct: 240 KDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGF---EPDKVTLNSLLDVYGKAR 296

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
              +A+ + + M +      V T N L+ +  +  L +EA  L ++++ +   P++ TYT
Sbjct: 297 RYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYT 356

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+ G  R   +  A   +NEM+  G KP++  +N +++     GK  + + +F+ +++ 
Sbjct: 357 TLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSA 416

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+V                 +  L+  FG       V  + KEM++ G  P+  TY 
Sbjct: 417 GFVPDV---------------VTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYV 461

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           +LI       + D+A+ IYK M+ +G  P I TYN ++ +  + G +E   K++ EM   
Sbjct: 462 SLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENL 521

Query: 533 GCCPDDNSYTVLI 545
              PD+ SY+ L+
Sbjct: 522 DSRPDELSYSSLL 534



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 21/279 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG-KRSDAIK 404
           P+ + YT L+    R     +A  V+  M+  G  P +V +N++L    KI     + + 
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 405 LFEVMKAKGPSPNVRSYTIMIW-----KFCKQNAAVY---------------TCLITGFG 444
           L + M+  G   +  +Y  +I         K+ A V+                 L+  +G
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             RR D    +LKEME+ GCPP  +TYN+LI       + +EA ++ +EM   G +P + 
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY  ++    + G  +     ++EM+R GC P+  +Y  LI     + +  E     +E+
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEI 413

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              G    V+ +N   A   + G    +  + ++M+ SG
Sbjct: 414 RSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSG 452



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 159/354 (44%), Gaps = 32/354 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVS-MLEEMGEKGLLS-METFKIAMNAFAAAKERKK 297
           GF  +  T+N+++++ G+    +T VS + +EM + G +   +T+   +++++      +
Sbjct: 417 GFVPDVVTWNTLLAVFGQ-NGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQ 475

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLG 356
           A+ I++ M +      + T N +L  L R    ++A+ LF ++++  + P+  +Y+ LL 
Sbjct: 476 AMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLH 535

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL----KIGKRSDAIKLFEVMKAK 412
            +   K L +   +  ++    +   + +HN +++ L+    K+   SD  K F  ++ +
Sbjct: 536 AYANAKKLDKMKSLSEDI----YAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRR 591

Query: 413 GPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIV 452
             S ++     MI  + K                     + A Y  L+  +      +  
Sbjct: 592 RCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKC 651

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
            ++L E++     PD  +YN +I     +    EA R++ EM  SG  P I TYN+ +KS
Sbjct: 652 ENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKS 711

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           Y     +E    +   M+  GC P++ +Y  ++    S  R  +   ++  + E
Sbjct: 712 YVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPE 765



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/371 (19%), Positives = 155/371 (41%), Gaps = 22/371 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N  TYN+++ + G   +F  M+ + +E+   G +  + T+   +  F       + 
Sbjct: 382 GCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEV 441

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F+ M K  +    DT   L+ +  R  L  +A  ++ ++ +    P+++TY  +L  
Sbjct: 442 SGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSA 501

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL------------------KIGKR 399
             R     +A +++ EM +   +PD ++++ +L                      +I   
Sbjct: 502 LARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESH 561

Query: 400 SDAIKLFEVMKAK--GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           +  +K   ++ +K    S   +++  +  + C  +  V   +I+ +G    +  V ++L 
Sbjct: 562 NGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILS 621

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M+E        TYN+L+ +       ++   I  E+  S  +P  ++YN ++ +Y + G
Sbjct: 622 LMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKG 681

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   +++ EM   G  PD  +Y + +   ++     EA   +  M+  G K     YN
Sbjct: 682 QMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYN 741

Query: 578 KFAADLSRAGR 588
               +    GR
Sbjct: 742 TILQEYCSHGR 752


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 22/344 (6%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMN 287
           FR FC  G +P    N   +  M+  L +    +    MLEEM  +G   ++ T    ++
Sbjct: 260 FRRFCEMGLRP----NLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALID 315

Query: 288 AFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
                   +KA  +F +L+     K  V T   ++    R +    A++L  ++K +   
Sbjct: 316 GLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLA 375

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  TYT L+ G C+  N   A  + N M ++GF P+V  +N +++GL K G+  +A K+
Sbjct: 376 PNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKV 435

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            +     G   +  +YTI+I + CKQ A +   L+              L  +M + G  
Sbjct: 436 LKSGFRNGLDADKVTYTILISEHCKQ-AEIKQALV--------------LFNKMVKSGIQ 480

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  +Y  LI +   +K   E+   ++E VR G  PT  TY  ++  Y + GN  +  K 
Sbjct: 481 PDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKF 540

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  M   GC  D  +Y  LI GL  Q +  EA    + M+EKG+
Sbjct: 541 FHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGL 584



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 167/418 (39%), Gaps = 71/418 (16%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A  FF WA     F H +R Y +  + L   + FE               + E  +  + 
Sbjct: 95  ALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEK--------------AHEVMQCMVK 140

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
           +FA     K+A+ +   M+         T+N +++ +    L + A+ LFD++  R   P
Sbjct: 141 SFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQP 200

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF--------------------------- 379
           N  +Y V++ G+C++ N++E+ R    MI++GF                           
Sbjct: 201 NCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYF 260

Query: 380 --------KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
                   +P+++    M+EGL K G    A ++ E M  +G  PNV ++T +I   CK+
Sbjct: 261 RRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKK 320

Query: 432 ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
                                N   YT +I+G+    +M+    LL  M+E+G  P+  T
Sbjct: 321 GWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNT 380

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  LI         + A  +   M   GF P + TYN I+    + G  +   KV     
Sbjct: 381 YTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGF 440

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           R G   D  +YT+LI     Q    +A     +M++ G++  +  Y    A   R  R
Sbjct: 441 RNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKR 498



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 21/263 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PNL  +T ++ G C+  ++ +A  +  EM+ +G+KP+V  H  +++GL K G    A +L
Sbjct: 270 PNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRL 329

Query: 406 F-EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           F ++++++   PNV +YT MI  +C+                     N   YT LI G  
Sbjct: 330 FLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHC 389

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                +  Y+L+  M E G  P+  TYNA++  +  +    EA ++ K   R+G      
Sbjct: 390 KAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKV 449

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY +++  + +    +    ++++M++ G  PD +SYT LI     + R  E+  + EE 
Sbjct: 450 TYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEA 509

Query: 565 LEKGMKAPVLDYNKFAADLSRAG 587
           +  G+      Y        R G
Sbjct: 510 VRFGLVPTNKTYTSMICGYCREG 532



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 20/301 (6%)

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTV 353
           K+A  + E M    +K  V T   L++ L +    ++A  LF KL       PN+ TYT 
Sbjct: 289 KQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTA 348

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G+CR + +  A  + + M ++G  P+   +  +++G  K G    A +L  VM  +G
Sbjct: 349 MISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEG 408

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
            SPNV +Y  ++   CK+                R+   Y +LK     G   D +TY  
Sbjct: 409 FSPNVCTYNAIVDGLCKKG---------------RVQEAYKVLKSGFRNGLDADKVTYTI 453

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI     Q    +A+ ++ +MV+SG +P IH+Y  ++  + +    +     ++E +R G
Sbjct: 454 LISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFG 513

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             P + +YT +I G   +     A K+   M + G  +  + Y    + L +  +   LD
Sbjct: 514 LVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSK---LD 570

Query: 594 E 594
           E
Sbjct: 571 E 571



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           ++ GF+ N  TYN+++  L +  + +    +L+     GL + + T+ I ++      E 
Sbjct: 405 NEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEI 464

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVL 354
           K+A+ +F  M K   +  + +   L+    R K  KE+++ F++ ++    P   TYT +
Sbjct: 465 KQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSM 524

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+CR  NL  A + ++ M D G   D + +  ++ GL K  K  +A  L++ M  KG 
Sbjct: 525 ICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGL 584

Query: 415 SPNVRSYTIMIWKFCK 430
           +P   +   + +++CK
Sbjct: 585 TPCEVTRVTLAYEYCK 600



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 116/274 (42%), Gaps = 30/274 (10%)

Query: 359 CRVKNLMEAGRVWN------EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           C VK+  E GRV        EM ++G  P     N +++ + ++G    A  LF+ M A+
Sbjct: 137 CMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCAR 196

Query: 413 GPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIV 452
           G  PN  SY +M+  +CK                     + A  + ++  F  +  +   
Sbjct: 197 GVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA 256

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
               +   E G  P+ + +  +I+ +  +    +A  + +EMV  G+KP ++T+  ++  
Sbjct: 257 LWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDG 316

Query: 513 YFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
             + G  E   +++ +++R     P+  +YT +I G    ++   A   L  M E+G+  
Sbjct: 317 LCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAP 376

Query: 572 PVLDYNKFAADLSRAG---RSYVLDELAQKMRFS 602
               Y        +AG   R+Y L  +  +  FS
Sbjct: 377 NTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFS 410



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 72/165 (43%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           V  C++  F    R+    +++ EM  +G  P   T N ++K++    + + A  ++ EM
Sbjct: 134 VMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEM 193

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G +P   +Y +++  Y + GN     +    MI RG   D+ + ++++     +   
Sbjct: 194 CARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFV 253

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             A  Y     E G++  ++++      L + G      E+ ++M
Sbjct: 254 TRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEM 298


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 180/401 (44%), Gaps = 28/401 (6%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWA--GDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           N +  L++          R  + F  W   G  P   + S   N +  I    + FE   
Sbjct: 263 NATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFE--- 319

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLEN 323
            MLEEM  KG   ++ T    ++        +KA  +F +L+    +K  V T  C++  
Sbjct: 320 -MLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMING 378

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             + +    A++L  ++K +   PN  TYT L+ G C+  N   A  + + M  +GF P+
Sbjct: 379 YCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  +N +++GL K G+  +A KL       G   +  +YTI+I +FC+Q           
Sbjct: 439 IFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQT---------- 488

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
             N++ + I       M + G  PD  TYN LI     QK  +E+ ++++E V  G  PT
Sbjct: 489 -DNKQALAI----FSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPT 543

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TY  ++  Y + G+     K + +M   GC PD  +Y  LI GL ++ +  EA +  E
Sbjct: 544 KETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYE 603

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRS----YVLDELAQKM 599
            M++ G+    +     A +  + G S     +L+ L +K+
Sbjct: 604 TMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKL 644



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 23/280 (8%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PNL  ++ L+ G C++ ++ +A  +  EM+ KG+KP+V  H  +++GL K G    A +L
Sbjct: 296 PNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRL 355

Query: 406 F-EVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           F +++++    PNV +YT MI  +CK+                    N   YTCLI G  
Sbjct: 356 FLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHC 415

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTI 503
                   Y+L+  M + G  P+  TYNA+I  L K  + P EA ++ +  ++SG     
Sbjct: 416 KAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFP-EAYKLLRRGLKSGLHADK 474

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY +++  + +  + +    ++  M + G  PD ++Y VLI     Q +  E+ K  EE
Sbjct: 475 VTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEE 534

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +  G+      Y        R G      +   KMR  G
Sbjct: 535 AVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYG 574



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 166/441 (37%), Gaps = 81/441 (18%)

Query: 208 NLSHNLVVDVLERFRH--ARRPAFRFFCWAGDKPGFAHNSRTY----NSMMSILGRARQF 261
           +L+H  V+ V+           +  FF W      F H  R Y     + ++     R  
Sbjct: 99  SLTHEQVITVVASLAQEAGSVVSLSFFNWVIGFSKFRHFMRLYIVCATTFLNNDNLDRAT 158

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           E M  M+    E G L                  K+AV +   M  +        +N ++
Sbjct: 159 EVMQCMVRSFSEIGKL------------------KEAVNMVIEMQNHGLVLKARILNFVI 200

Query: 322 ENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF- 379
           +          A+ +FD++  R   P+ T+Y +++ G+CR+  + +  R   +MI++G+ 
Sbjct: 201 DVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYA 260

Query: 380 ----------------------------------KPDVVAHNIMLEGLLKIGKRSDAIKL 405
                                              P+++  + ++ GL KIG    A ++
Sbjct: 261 VDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEM 320

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFG 444
            E M  KG  PNV ++T +I   CK+                     N   YTC+I G+ 
Sbjct: 321 LEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYC 380

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              +++    LL  M+E+G  P+  TY  LI           A  +   M + GF P I 
Sbjct: 381 KEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIF 440

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN I+    + G +    K+    ++ G   D  +YT+LI     Q  + +A      M
Sbjct: 441 TYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRM 500

Query: 565 LEKGMKAPVLDYNKFAADLSR 585
            + G++  +  YN   A   R
Sbjct: 501 FKVGLQPDMHTYNVLIATFCR 521



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/165 (18%), Positives = 71/165 (43%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
           V  C++  F    ++    +++ EM+  G        N +I +       D A +++ EM
Sbjct: 160 VMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEM 219

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +     P   +Y +++  Y + G      +   +MI RG   D+ + T++I     +   
Sbjct: 220 LDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFV 279

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             A+ Y ++ ++ G+   +++++     L + G      E+ ++M
Sbjct: 280 NRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEM 324


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 35/312 (11%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL---FDKL----KHRFTPNLTT 350
           A+ +F+ +  +   A V   N LL  + R++    ++L    F+++      +  PNL T
Sbjct: 33  ALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCT 92

Query: 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL---KIGKRSDAIKLFE 407
           Y++L+G +CR+ +L      +  ++  G++ D +A N +L+GL    ++G+  D   L +
Sbjct: 93  YSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDV--LLQ 150

Query: 408 VMKAKGPSPNVRSYTIMIWKFCKQ-----------------------NAAVYTCLITGFG 444
            M   G  P+  SYTI++   C +                       N   Y+ +I GF 
Sbjct: 151 RMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFF 210

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              ++D  Y+L  EM +RG PPD +TY  +I  +   ++ D A  ++++M+ +GFKP  +
Sbjct: 211 TEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNY 270

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN ++  Y   G ++   ++ +EM  RG  PD  +Y  L+  L    R  EA  + + M
Sbjct: 271 TYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSM 330

Query: 565 LEKGMKAPVLDY 576
           + KG+K  V  Y
Sbjct: 331 IRKGIKPKVSTY 342



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 174/404 (43%), Gaps = 22/404 (5%)

Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNA 288
           RFF  +  + G      TY  ++           M S L+ M E GL      F I  +A
Sbjct: 324 RFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSA 383

Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPN 347
           +A      KA+ IF  M ++     V     L++ L +     +A++ F+++ +   TPN
Sbjct: 384 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPN 443

Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           +  +  L+ G C V     A  +  EM+D+G  P+ V  N ++  L  +G+  +  +L +
Sbjct: 444 IVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLID 503

Query: 408 VMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRR 447
           +M+  G  P+  SYT +I  +C                          Y  L+ G+ +  
Sbjct: 504 LMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSAS 563

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           R+D  Y L +EM  +G  P  +TYN ++  +   K   EA  +Y  M+ SG K  I+TYN
Sbjct: 564 RIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +I+    ++   +   K++  +  +G   +  ++T++IG L+   R  +A      +   
Sbjct: 624 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN 683

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611
           G+   V+ Y   A +L   G     D L   M  +G    S +L
Sbjct: 684 GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQML 727



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 169/406 (41%), Gaps = 57/406 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL----------------------- 276
           GF  N+ TYN ++       +++ +V MLEEM  +GL                       
Sbjct: 264 GFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREA 323

Query: 277 -------------LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
                          + T+ I ++ +A      +  +  +LM +          N     
Sbjct: 324 RFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSA 383

Query: 324 LGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             +  +  +A  +F+K++ H  +PN+  Y  L+   C++  + +A   +N+MI++G  P+
Sbjct: 384 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPN 443

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC------------- 429
           +V  N ++ GL  + K   A +L   M  +G  PN   +  +I   C             
Sbjct: 444 IVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLID 503

Query: 430 -------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
                  + +A  YT LI+G+    R D    +   M   G  P  +TYN L+       
Sbjct: 504 LMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSAS 563

Query: 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
             D+A  +++EM+R G  P + TYN I+   FQT  +   ++++  MI  G   D  +Y 
Sbjct: 564 RIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623

Query: 543 VLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +++ GL   +   EA+K  + +  KG++  ++ +      L + GR
Sbjct: 624 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 669



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 157/378 (41%), Gaps = 38/378 (10%)

Query: 246 RTYNSMMSILGRAR---QFETMVS----MLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
           R +N +++ + RAR     E  VS    M+ E  +K   ++ T+ I +  F      +  
Sbjct: 50  RAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHG 109

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-----PNLTTYTV 353
            A F L+ K  ++     IN LL+ L   K   EA    D L  R       P+  +YT+
Sbjct: 110 FAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAM---DVLLQRMPELGCMPDTVSYTI 166

Query: 354 LLGGWCRVKNLMEAGRVWNEMID---KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           LL G C  K   EA  + + M D   +   P+VV+++I++ G    G+      LF  M 
Sbjct: 167 LLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMI 226

Query: 411 AKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMD 450
            +G  P+V +YT +I   CK                     N   Y CLI G+ +  +  
Sbjct: 227 DRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWK 286

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
            V  +L+EM  RG  PD  TY +L+  +       EA   +  M+R G KP + TY +++
Sbjct: 287 EVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILI 346

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
             Y   G         D M+  G  PD + + +            +A     +M + G+ 
Sbjct: 347 HGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLS 406

Query: 571 APVLDYNKFAADLSRAGR 588
             V++Y      L + GR
Sbjct: 407 PNVVNYGALIDALCKLGR 424



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 24/220 (10%)

Query: 259 RQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
           + F+ MVS+       GL   E T+   ++ + +A     A  +F  M +     GV T 
Sbjct: 535 KVFDGMVSI-------GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTY 587

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N +L  L ++K   EA+ L+  + +  T  ++ TY ++L G C+   + EA +++  +  
Sbjct: 588 NTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS 647

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG + +++   IM+  LLK G++ DA+ LF  + A G  PNV +Y ++     ++     
Sbjct: 648 KGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEE----- 702

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                  G+    D    L   ME+ G  P+    NAL++
Sbjct: 703 -------GSLEEFD---SLFSAMEKNGTAPNSQMLNALVR 732



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 2/191 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G +    TYN+++     A + +    +  EM  KG+   + T+   ++     K   +A
Sbjct: 544 GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEA 603

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             ++  M     K  + T N +L  L +S    EA  +F  L  +    N+ T+T+++G 
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 663

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +     +A  ++  +   G  P+VV + ++ E L++ G   +   LF  M+  G +PN
Sbjct: 664 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 723

Query: 418 VRSYTIMIWKF 428
            +    ++ + 
Sbjct: 724 SQMLNALVRRL 734


>gi|224115776|ref|XP_002332054.1| predicted protein [Populus trichocarpa]
 gi|222831940|gb|EEE70417.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 184/405 (45%), Gaps = 22/405 (5%)

Query: 200 AVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR 259
           A LDE GI  + NLV  V+   R   R AF  F W GDK G   + +    M+ +LG  R
Sbjct: 13  ASLDESGIRANQNLVYSVIWELREEWRLAFLAFKW-GDKWGCV-DEKACELMVWVLGNHR 70

Query: 260 QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
           +F T   ++ ++    + + +   I ++ +AAA    KA+  F +M+K++     +    
Sbjct: 71  KFNTAWILIRDLHRSLMSTRKAMLIMIDRYAAANVPGKAIYAFRIMDKFRMTPDEEAFYF 130

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLMEAGRVWNEMIDKG 378
           LL  L ++   +EA+      K  F   +  + ++L GWC +  ++ EA R+W EM    
Sbjct: 131 LLNVLCKNGNIEEAEEFMLVNKKFFPLEVEGFNIILNGWCNICVDVFEAKRIWREMSKYC 190

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
             PD   +  M+    K+G   D+++L++ MK +G  P +  Y  +++   ++N     C
Sbjct: 191 IDPDATTYTHMISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVYILTREN-----C 245

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
                           +L +M+E G   D  TYN++I+ +   K  ++A  +   M+   
Sbjct: 246 FKEAL----------KILDKMKETGLQRDSATYNSMIRPLCEAKKLEDARSLMAAMIEEN 295

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             PTI TY+    ++ Q   +E   +V D M   G  P ++++ +L+      ++   A 
Sbjct: 296 VSPTIETYH----AFLQGIVFEETFEVLDRMKIAGLGPTEDTFLLLLAKFFKLEQPENAL 351

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           K   EM +  + + +  Y      L+R G      E   +MR +G
Sbjct: 352 KIWVEMKQYEVASNLTHYTVMVEGLARCGLLTKAREYYAEMRSNG 396



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 14/149 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +S TYNSM+  L  A++ E   S++  M E+ +  ++ET+   +      +     
Sbjct: 260 GLQRDSATYNSMIRPLCEAKKLEDARSLMAAMIEENVSPTIETYHAFLQGIVFEE----- 314

Query: 299 VAIFELMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTV 353
              FE++++ K  AG+    DT   LL    + + P+ A  ++ ++K +    NLT YTV
Sbjct: 315 --TFEVLDRMKI-AGLGPTEDTFLLLLAKFFKLEQPENALKIWVEMKQYEVASNLTHYTV 371

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           ++ G  R   L +A   + EM   G+  D
Sbjct: 372 MVEGLARCGLLTKAREYYAEMRSNGYSDD 400



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 6/182 (3%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G+      YNS++ IL R   F+  + +L++M E GL     T+   +     AK+ +
Sbjct: 223 KRGWVPGIEVYNSLVYILTRENCFKEALKILDKMKETGLQRDSATYNSMIRPLCEAKKLE 282

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL 355
            A ++   M +      ++T +  L+ +    + +E   + D++K     P   T+ +LL
Sbjct: 283 DARSLMAAMIEENVSPTIETYHAFLQGI----VFEETFEVLDRMKIAGLGPTEDTFLLLL 338

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +++    A ++W EM       ++  + +M+EGL + G  + A + +  M++ G S
Sbjct: 339 AKFFKLEQPENALKIWVEMKQYEVASNLTHYTVMVEGLARCGLLTKAREYYAEMRSNGYS 398

Query: 416 PN 417
            +
Sbjct: 399 DD 400


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 197/471 (41%), Gaps = 59/471 (12%)

Query: 190 ELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRT 247
           E  ++DR +  + DE GI    +L + ++  +  A  P    R      +        ++
Sbjct: 126 EFKTIDRLLIQMKDE-GIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKS 184

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN ++ IL      +   ++  +M  + +  ++ TF + M AF A  E   A+++   M 
Sbjct: 185 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMT 244

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K+           L+ +L +     EA QLL +       P+  T+  ++ G C+   + 
Sbjct: 245 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF------------------- 406
           EA ++ N M+ +GF PD + +  ++ GL KIG+   A  LF                   
Sbjct: 305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFV 364

Query: 407 -------------EVMKAKGPSPNVRSYTIMIWKF--------------------CKQNA 433
                        +++ + G  P+V +Y  +I+ +                    CK N 
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYK 492
             YT L+ GF    ++D  Y++L EM   G  P+ + +N LI    K  ++P EAV I++
Sbjct: 425 YSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIP-EAVEIFR 483

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM R G KP ++T+N ++    +    +    +  +MI  G   +  +Y  LI   + + 
Sbjct: 484 EMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRG 543

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              EA K + EM+ +G     + YN     L RAG       L +KM   G
Sbjct: 544 EIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 178/399 (44%), Gaps = 26/399 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM- 286
           +   F W G + G+ H+   Y  ++  LG   +F+T+  +L +M ++G++  E+  I++ 
Sbjct: 94  SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153

Query: 287 -NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK-EAQLLFDKLKHRF 344
            +   A    +    + E+ N Y  +    + N +LE L      K  A + +D L  + 
Sbjct: 154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 213

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P L T+ V++  +C V  +  A  +  +M   G  P+ V +  ++  L K  + ++A++
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 273

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCK----QNAA--VYTCLITGFGNRRRMDIVY----- 453
           L E M   G  P+  ++  +I   CK      AA  V   LI GF      DI Y     
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPD---DITYGYLMN 330

Query: 454 --------DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIH 504
                   D  K++  R   P+ + +N LI         D+A  +  +MV S G  P + 
Sbjct: 331 GLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVC 390

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN ++  Y++ G   +  +V  +M  +GC P+  SYT+L+ G     +  EAY  L EM
Sbjct: 391 TYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM 450

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              G+K   + +N   +   +  R     E+ ++M   G
Sbjct: 451 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 169/381 (44%), Gaps = 29/381 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GFA +  TY  +M+ L +  + +    +   + +  ++    F   ++ F        A 
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV---IFNTLIHGFVTHGRLDDAK 373

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           A+  +++  Y     V T N L+    +  L   A ++L D       PN+ +YT+L+ G
Sbjct: 374 AVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDG 433

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  + EA  V NEM   G KP+ V  N ++    K  +  +A+++F  M  KG  P+
Sbjct: 434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 493

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V ++  +I   C+                     N   Y  LI  F  R  +     L+ 
Sbjct: 494 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  +G P D +TYN+LIK +      D+A  ++++M+R G  P+  + N+++    ++G
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E   +   EM+ RG  PD  ++  LI GL    R  +      ++  +G+    + +N
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN 673

Query: 578 KFAADLSRAGRSY----VLDE 594
              + L + G  Y    +LDE
Sbjct: 674 TLMSWLCKGGFVYDACLLLDE 694



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 168/389 (43%), Gaps = 27/389 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   NS  Y +++  L +  +    + +LEEM   G +   ETF   +          
Sbjct: 245 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A  +   M    F     T   L+  L +      A+ LF ++     P +  +  L+ 
Sbjct: 305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PEIVIFNTLIH 361

Query: 357 GWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G+     L +A  V ++M+   G  PDV  +N ++ G  K G    A+++   M+ KG  
Sbjct: 362 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
           PNV SYTI++  FCK                     N   + CLI+ F    R+    ++
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481

Query: 456 LKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
            +EM  +GC PD  T+N+LI  L ++ ++   A+ + ++M+  G      TYN ++ ++ 
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEI-KHALWLLRDMISEGVVANTVTYNTLINAFL 540

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +  RK+ +EM+ +G   D+ +Y  LI GL       +A    E+ML  G     +
Sbjct: 541 RRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNI 600

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             N     L R+G      E  ++M   G
Sbjct: 601 SCNILINGLCRSGMVEEAVEFQKEMVLRG 629



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   N  +Y  ++    +  + +   ++L EM   GL      F   ++AF       +A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           V IF  M +   K  V T N L+  L      K A  LL D +      N  TY  L+  
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   + EA ++ NEM+ +G   D + +N +++GL + G+   A  LFE M   G +P+
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             S  I+I   C+                     +   +  LI G     R++    + +
Sbjct: 599 NISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 658

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           +++  G PPD +T+N L+  +       +A  +  E +  GF P   T++++++S
Sbjct: 659 KLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 29/263 (11%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMN 287
           FR     G KP    +  T+NS++S L    + +  + +L +M  +G+++   T+   +N
Sbjct: 482 FREMPRKGCKP----DVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLIN 537

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAG-VDTI--NCLLENLGRSKLPKEAQLLFDK-LKHR 343
           AF    E K+A    +L+N+  F+   +D I  N L++ L R+    +A+ LF+K L+  
Sbjct: 538 AFLRRGEIKEAR---KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P+  +  +L+ G CR   + EA     EM+ +G  PD+V  N ++ GL + G+  D +
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 404 KLFEVMKAKGPSPNVRSY-TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
            +F  ++A+G  P+  ++ T+M W  CK       CL               LL E  E 
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSW-LCKGGFVYDACL---------------LLDEGIED 698

Query: 463 GCPPDGLTYNALIKLMKIQKMPD 485
           G  P+  T++ L++ +  Q+  D
Sbjct: 699 GFVPNHRTWSILLQSIIPQETLD 721


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 168/380 (44%), Gaps = 24/380 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
           +YN++++ L + ++ E  V +L EM G     +  T+ I M+        ++A+ +   M
Sbjct: 12  SYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEM 71

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   +  V   + L+            + LFD+ L+   +PN+  Y+ L+ G+C+    
Sbjct: 72  KRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLW 131

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  V + M ++G +PDV  +  M+ GL K G+   A+ LF++M  KG  P+  +Y ++
Sbjct: 132 REATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVL 191

Query: 425 IWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERG- 463
           I   CK+                        Y  LI G  N  ++D    L   + E G 
Sbjct: 192 INGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGN 251

Query: 464 -CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
              PD +T+N +I+ +  +   D+AV IY  M+  G    + T ++++  Y ++G  +  
Sbjct: 252 YVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKA 311

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
            ++W  + + G  P   +Y+V+I G         A      M   G+   + DYN   A 
Sbjct: 312 MELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMAS 371

Query: 583 LSRAGRSYVLDELAQKMRFS 602
           L +         L Q+M+ S
Sbjct: 372 LCKESSLEQARRLFQEMKES 391



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 172/375 (45%), Gaps = 24/375 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           + G   +   Y++++S        +   ++ +EM EKG+  ++  +   +N F      +
Sbjct: 73  RKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWR 132

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLL 355
           +A A+   M +   +  V T  C++  L +    ++A  LFD +  +   P+  TY VL+
Sbjct: 133 EATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLI 192

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG-- 413
            G C+   + +A +++  M++KG + +VV++N ++ GL   GK  +A+KLF  +   G  
Sbjct: 193 NGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNY 252

Query: 414 PSPNVRSYTIMIWKFCKQN------------------AAVYTC--LITGFGNRRRMDIVY 453
             P+V ++  +I   CK+                     ++TC  LI  +     +D   
Sbjct: 253 VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAM 312

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +L K + + G  P   TY+ +I       M + A  ++  M  SG  PT+  YN +M S 
Sbjct: 313 ELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASL 372

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            +  + E  R+++ EM    C PD  S+ ++I G +       A + L +M + G+    
Sbjct: 373 CKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDA 432

Query: 574 LDYNKFAADLSRAGR 588
             Y+ F   LS+ G+
Sbjct: 433 YTYSSFINRLSKLGQ 447



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 20/264 (7%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P++ +Y  ++ G C+ K L +A  +  EM     +P+   + I+++GL K G+  +A++L
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              MK KG   +V                VY+ LI+GF ++  +D    L  EM E+G  
Sbjct: 68  LGEMKRKGLEVDV---------------VVYSTLISGFCSKGCLDRGKALFDEMLEKGIS 112

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P+ + Y+ LI     + +  EA  +   M   G +P ++TY  ++    + G       +
Sbjct: 113 PNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDL 172

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           +D M  +G  P   +Y VLI GL  +   G+A+K  E MLEKG +  V+ YN     L  
Sbjct: 173 FDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCN 232

Query: 586 AGRSYVLDELAQKMRFSGKFEVSN 609
            G+   LDE A K+ FS   E  N
Sbjct: 233 NGK---LDE-AMKL-FSSLLEDGN 251



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 152/356 (42%), Gaps = 28/356 (7%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  TY  M+  L   GRAR+   +  ++ E GE+   S  T+ + +N         
Sbjct: 145 GIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEP--STVTYNVLINGLCKEGCIG 202

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFTPNLTTYTV 353
            A  IFE M +   +  V + N L+  L  +    EA  LF  L    +   P++ T+  
Sbjct: 203 DAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNT 262

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G C+   L +A  +++ MI++G   ++   +I++   +K G    A++L++ +   G
Sbjct: 263 VIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLG 322

Query: 414 PSPNVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVY 453
             P+  +Y++MI  FCK +                       Y  L+        ++   
Sbjct: 323 LVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQAR 382

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            L +EM+E  C PD +++N +I           A  +  +M + G  P  +TY+  +   
Sbjct: 383 RLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRL 442

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            + G  E  +  +D MI  G  PD++ Y  LI G    D   E    L +M + G+
Sbjct: 443 SKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGV 498



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 161/354 (45%), Gaps = 24/354 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G + N   Y+ +++   +   +    ++L  M E+G+   + T+   +         +KA
Sbjct: 110 GISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKA 169

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           + +F+LM +   +    T N L+  L +     +A  +F+ +  +     + +Y  L+ G
Sbjct: 170 LDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229

Query: 358 WCRVKNLMEAGRVWNEMIDKG--FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            C    L EA ++++ +++ G   +PDV+  N +++GL K G+   A+++++ M  +G  
Sbjct: 230 LCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF 289

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
            N+ +  I+I ++ K                     ++  Y+ +I GF     ++    L
Sbjct: 290 GNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGL 349

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
              M+  G  P    YN L+  +  +   ++A R+++EM  S  +P   ++N+++    +
Sbjct: 350 FSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK 409

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            G+    +++ ++M + G  PD  +Y+  I  L    +  EA    + M+  G+
Sbjct: 410 AGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGI 463



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 120/266 (45%), Gaps = 17/266 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N+++  L +  + +  V + + M E+G   ++ T  I +  +  +    KA+ +++ +
Sbjct: 259 TFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRV 318

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNL 364
           +K        T + +++   +  +   A+ LF ++K    +P L  Y  L+   C+  +L
Sbjct: 319 HKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSL 378

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R++ EM +   +PD ++ NIM++G LK G    A +L   M+  G +P+  +Y+  
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSF 438

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I +  K             G        +D    M   G  PD   Y++LIK   +    
Sbjct: 439 INRLSK------------LGQMEEAKGAFD---SMIASGITPDNHVYDSLIKGFGLNDEI 483

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +E + + ++M   G    +   N I+
Sbjct: 484 EEVINLLRQMADMGVILDLEITNSIL 509



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M R    P I +YN I+    +    E    +  EM    C P+  +Y +L+ GL  + R
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG----RSYVLDELAQK 598
             EA + L EM  KG++  V+ Y+   +     G       + DE+ +K
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK 109


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 22/345 (6%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L+EM   G+ ++   +   ++A+   K+  +   + ++M     +  V T   L++ L 
Sbjct: 89  LLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLS 148

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++   + + +F+++K +  + ++  Y+ ++  +CR  N+  A  V++E +  G +P+  
Sbjct: 149 AARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEH 208

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA---------- 434
            +  ++ G  KIG+   A  L   M+ +G   N   +  MI  +C++N            
Sbjct: 209 TYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIM 268

Query: 435 ----------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  L  G     RMD   +LL+ M E+G  P+ ++Y  LI +   +   
Sbjct: 269 EKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDM 328

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA R+++EM  +G +P++ TYN++M  Y + G+     +  +EM ++G  PD  SY  L
Sbjct: 329 VEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAAL 388

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           + G     +   A +  EEM ++G K  ++ Y    + L++ GRS
Sbjct: 389 VHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRS 433



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 176/386 (45%), Gaps = 30/386 (7%)

Query: 209 LSHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           LS ++VVD      R  HAR+           + G   N+  YNS++    R +  + + 
Sbjct: 68  LSASVVVDGYCKSGRVAHARQ-----LLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 122

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
            ML+ M  +G+  ++ T+ I ++  +AA++  K  A+FE M        V   + ++   
Sbjct: 123 EMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY 182

Query: 325 GRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R+   + A  +FD+ + +   PN  TY  L+ G+C++  +  A  +  +M  +G   + 
Sbjct: 183 CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ 242

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------I 423
           +  N M++G  +      A+++  +M+  G   +V +Y                     I
Sbjct: 243 IVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRI 302

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI K  + N   YT LI+   N   M     L +EM   G  P  +TYN ++     +  
Sbjct: 303 MIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGS 362

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA R   EM + G  P I++Y  ++  +   G  ++  ++++EM +RG  P+  +YT 
Sbjct: 363 IREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTA 422

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGM 569
           LI GL  + RS EA++  + ML  G+
Sbjct: 423 LISGLAKEGRSEEAFQLYDNMLGDGL 448



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 139/313 (44%), Gaps = 30/313 (9%)

Query: 198 MEAVLDEC-GINLSHNL-----VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           +EAV +E    NLS ++     V++   R  + RR +  F    G+  G   N  TY ++
Sbjct: 156 VEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGN--GIEPNEHTYGAL 213

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++   +  Q E    ++ +M  +G+ ++   F   ++ +       KA+ I  +M K   
Sbjct: 214 INGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGI 273

Query: 311 KAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  V T N L   L R+    EA+ LL   ++    PN  +YT L+   C   +++EA R
Sbjct: 274 ELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARR 333

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           ++ EM   G +P +V +N+M++G +K G   +A +    M+ KG  P++ SY  ++   C
Sbjct: 334 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHC 393

Query: 430 --------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                               K N   YT LI+G     R +  + L   M   G  PD  
Sbjct: 394 VNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDA 453

Query: 470 TYNALIKLMKIQK 482
            Y+AL+  +   K
Sbjct: 454 LYSALVGSLHTDK 466



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 20/264 (7%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           QLL +  +H    N   Y  LL  + R K+      +   M ++G +P V  + I+++GL
Sbjct: 88  QLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 147

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
                 +    +FE MK+K  S +V  Y+ +I  +C+                     N 
Sbjct: 148 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 207

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  LI GF    +M+    L+ +M+ RG   + + +N +I     + M D+A+ I   
Sbjct: 208 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMI 267

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + G +  ++TYN +     +    +  + +   MI +G  P+  SYT LI    ++  
Sbjct: 268 MEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGD 327

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYN 577
             EA +   EM   G +  ++ YN
Sbjct: 328 MVEARRLFREMAGNGAEPSLVTYN 351



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           +V++ G+C+   +  A ++ +EM   G K + + +N +L+   +        ++ +VM+ 
Sbjct: 71  SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 130

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +G  P V +YTI               L+ G    R +  V  + +EM+ +    D   Y
Sbjct: 131 EGIEPTVGTYTI---------------LVDGLSAARDITKVEAVFEEMKSKNLSGDVYFY 175

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           +++I           A  ++ E V +G +P  HTY  ++  + + G  E    +  +M  
Sbjct: 176 SSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV 235

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           RG   +   +  +I G   ++   +A +    M + G++  V  YN  A  L RA R   
Sbjct: 236 RGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANR--- 292

Query: 592 LDELAQKMRF 601
           +DE    +R 
Sbjct: 293 MDEAKNLLRI 302


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 175/436 (40%), Gaps = 102/436 (23%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAM 286
           A+ FF WAG+KPGF HN+ T   +++   +A++ E    +L+E  E      E  +   +
Sbjct: 59  AWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVI 118

Query: 287 NAFAAAKERKKAVAIFELMNKYK------------------------------FKA---- 312
           N F  A +  +A   FEL+++ K                              FK+    
Sbjct: 119 NGFCKAGQVDQA---FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE 175

Query: 313 ---GVDTINCLLENLGRSKLPKEAQLLFDKLKHRF------------------------- 344
               V T N ++  L ++    EA  LFD ++ R+                         
Sbjct: 176 CSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQR 235

Query: 345 ----------------TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
                            PN+ TY+ L+ G C+V    E   +   M +KGF  +++  N 
Sbjct: 236 VDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNA 295

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
           ML  L K  ++  A + FE +   G  PNV +Y + +   CK                  
Sbjct: 296 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK 355

Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
              +   Y+ +I GF    RMD   D+   M    C P  +T+  L+      K   EA 
Sbjct: 356 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAF 415

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           R++++MV +GF P + TYN++M       + E   +++ +M R+   PD N+Y  LI  L
Sbjct: 416 RVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCL 475

Query: 549 ISQDRSGEAYKYLEEM 564
               R  EA ++L+ M
Sbjct: 476 CRARRVDEAKEFLDVM 491



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 155/321 (48%), Gaps = 29/321 (9%)

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
           NK  F+    T   LL    ++K  +EA +LL ++L+    PN   YT ++ G+C+   +
Sbjct: 68  NKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQV 127

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A  + +EM ++G K DV+ H+ +++GL + G+  +A++ F+ M  +  SPNV +Y  +
Sbjct: 128 DQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC-SPNVITYNTV 186

Query: 425 IWKFCKQN-------------------------AAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +   CK N                            Y+ +I      +R+D  Y+  K M
Sbjct: 187 VNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRM 246

Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
              GC P+ +TY++LI  L K+ + P E + +   M   GF   I  +N ++ + ++   
Sbjct: 247 RAVGCAPNVVTYSSLIDGLCKVDR-PSECLELLLHMKEKGFGINIIDFNAMLHALWKNDE 305

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E   + ++ +++ G  P+  +Y V + GL    R  EAY+ L EM+E  +   V+ Y+ 
Sbjct: 306 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSS 365

Query: 579 FAADLSRAGRSYVLDELAQKM 599
                 +AGR    D++  +M
Sbjct: 366 IIDGFCKAGRMDKADDVFTRM 386



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 205/499 (41%), Gaps = 97/499 (19%)

Query: 184 VCKV--IDELFSLDRNMEAVLDE---CGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           +CK   IDE   L  +ME   +    C  + +S++ V+D L + +   + A+ +F     
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK-AYEYF-KRMR 247

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
             G A N  TY+S++  L +  +    + +L  M EKG  +++  F   ++A     E++
Sbjct: 248 AVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQE 307

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLL 355
           KA   FE + K   K  V T N  +  L ++    EA ++L + ++ + TP++ TY+ ++
Sbjct: 308 KACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSII 367

Query: 356 GGWCRV-----------------------------------KNLMEAGRVWNEMIDKGFK 380
            G+C+                                    K   EA RV  +M++ GF 
Sbjct: 368 DGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFI 427

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------- 431
           P +  +N++++ +        A++++  MK K   P+  +Y  +I   C+          
Sbjct: 428 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEF 487

Query: 432 -----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
                      N A+   L+     +  +D    +L  + E GC P G T+  L++ + +
Sbjct: 488 LDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYL 547

Query: 481 QKM--------------------------------PDEAVRIYKEMVRSGFKPTIHTYNM 508
           +K                                 PDEAV + ++MV  G +P   TY  
Sbjct: 548 RKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVA 607

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++S       E     +++M  RGC P   +YT+LIG   S D + EA++  E M+  G
Sbjct: 608 VLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAG 667

Query: 569 MKAPVLDYNKFAADLSRAG 587
                      ++ L  AG
Sbjct: 668 FTPQAQTMRTLSSCLRDAG 686



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           + GF+   +T  +++ ++ +   +E   ++  E +   C P++  YT +I G     +  
Sbjct: 69  KPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVD 128

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWA 615
           +A++ L+EM E+G+K  VL ++     L R GR   +DE  ++ +  G+    NV+    
Sbjct: 129 QAFELLDEMKERGVKMDVLLHSTLIQGLCRKGR---IDEALEQFKSMGEECSPNVITY-- 183

Query: 616 ETTKNRVYRKDRIE 629
            T  N + + +RI+
Sbjct: 184 NTVVNGLCKANRID 197


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 179/391 (45%), Gaps = 41/391 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  NSR  +    ++G          +LE+ G+  + +   +   ++ F  A   + A 
Sbjct: 19  GF-FNSRNIDKATRVMG----------ILEKHGKPDVFA---YNAVISGFCKANRIESAK 64

Query: 300 AIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
            + + M +  F   V T N ++    G+ K+    ++  + LK +   P L TYT+L+  
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     + EA ++ +EM+ +G +PD   +N++  GL K GK   A +    + ++G  P+
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 418 VRSYTIMI--------------W------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y I++              W      + C+ N   Y+ LI+      +++   +L+K
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK 244

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M+E+G  PD   Y+ LI     +   D A+     M+  GF P I  YN IM +  + G
Sbjct: 245 VMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNG 304

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +++ ++   GC P+ +SY  ++  L S      A   + +ML KG+   V+ YN
Sbjct: 305 NGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYN 364

Query: 578 KFAADLSRAGRSYVLDELAQKMR--FSGKFE 606
              + L R G   ++DE    +    SG+F+
Sbjct: 365 SLISCLCRDG---MVDEAIGLLADMLSGRFQ 392



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 18/277 (6%)

Query: 315 DTINC--LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           D I C  L++    S+   +A  +   L+    P++  Y  ++ G+C+   +  A  V +
Sbjct: 9   DVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLD 68

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ 431
            M  KGF PDVV HNIM+      GK   A+K+F E++K     P + +YTI+I  +  +
Sbjct: 69  RMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILE 128

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
                            +D    LL EM  RG  PD  TYN + + +  +   D A    
Sbjct: 129 GG---------------IDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFV 173

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           + +   G KP + TYN+++++    G ++ G K   E+  RGC P+  +Y++LI  L   
Sbjct: 174 RTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRD 233

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +  E+   ++ M EKG+      Y+   A   R G+
Sbjct: 234 GKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGK 270



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 158/365 (43%), Gaps = 23/365 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFE-L 304
            YN+++S   +A + E+  ++L+ M  KG    + T  I +  F    +   A+ +FE L
Sbjct: 46  AYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEEL 105

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKN 363
           +     K  + T   L+E         EA  L D++  R   P+  TY V+  G C+   
Sbjct: 106 LKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK 165

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           +  A      +  +G KPDV+ +NI+L  LL  GK  +  K    + ++G  PNV +Y+I
Sbjct: 166 VDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I   C+                     +A  Y  LI  F    ++D+  + L  M   G
Sbjct: 226 LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             PD + YN ++  +      D AV I+ ++   G  P + +YN ++ + + +G+     
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRAL 345

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            +  +M+ +G  PD  +Y  LI  L       EA   L +ML    +  ++ Y      L
Sbjct: 346 GMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGL 405

Query: 584 SRAGR 588
            +A R
Sbjct: 406 CKAHR 410



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 143/328 (43%), Gaps = 30/328 (9%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK--KAVAIFEL 304
           TY  ++         +  + +L+EM  +GL   +TF   +      KE K  +A      
Sbjct: 117 TYTILIEAYILEGGIDEALKLLDEMLSRGL-EPDTFTYNVITRGLCKEGKVDRAFEFVRT 175

Query: 305 MNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           +N    K  V T N LL  L  + K  +  + + +       PN+ TY++L+   CR   
Sbjct: 176 LNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGK 235

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + E+  +   M +KG  PD   ++ ++    + GK   AI+  + M   G  P++ +Y  
Sbjct: 236 IEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNT 295

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGF---GNRRRMDIVYDLLKEME 460
           ++   CK                     N + Y  +++     G+R R      ++ +M 
Sbjct: 296 IMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYR---ALGMISQML 352

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G  PD +TYN+LI  +    M DEA+ +  +M+   F+P I +Y  ++    +    +
Sbjct: 353 SKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRID 412

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
              +V   MI  GC P++ +YT+LI G+
Sbjct: 413 DAIEVLAAMIENGCQPNETTYTLLIEGI 440


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 156/320 (48%), Gaps = 16/320 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  F L  + K+    DT   +LE+L + K  K     + + 
Sbjct: 68  VFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEI 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+ R+  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +  +L   M A G  P+V +Y+++I   CK++               +MD  + L  EM
Sbjct: 188 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKES---------------KMDEAHKLFDEM 232

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            +RG  P+G+T+  LI         D A+ IYK+M+  GF P   TYN ++    + G+ 
Sbjct: 233 LDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDL 292

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
              + + DEM  +G  PD  +YT LI G   +     A++Y + M+++ ++   + Y   
Sbjct: 293 XQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTAL 352

Query: 580 AADLSRAGRSYVLDELAQKM 599
            + L + GRS   +++ ++M
Sbjct: 353 ISGLCKEGRSVDAEKMLREM 372



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 136/280 (48%), Gaps = 21/280 (7%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLPKEAQLL 336
           S+  F I M+ F    E + A ++F+ + K+  +  V + N L+   +    L +  +L 
Sbjct: 135 SLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
                    P++ TY+VL+ G C+   + EA ++++EM+D+G  P+ V    +++G  K 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKN 254

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVY 436
           GK   A+++++ M ++G SP+  +Y  +I+  CK+                    +   Y
Sbjct: 255 GKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITY 314

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           T LI G      ++  ++  K M +     D ++Y ALI  +  +    +A ++ +EM+ 
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLS 374

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            G KP   TY ++M  + + G+ +MG K+  EM R G  P
Sbjct: 375 VGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 17/229 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+ +++ L +  + +    + +EM ++GL+ +  TF   ++      +   A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLA 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I++ M    F     T N L+  L +     +A+ L D++  +   P+  TYT L+ G
Sbjct: 261 MEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDG 320

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  +L  A      MI +  + D V++  ++ GL K G+  DA K+   M + G  P+
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPD 380

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             +YTI++ +FCK             G++        LLKEM+  G  P
Sbjct: 381 TGTYTIVMHEFCKNGDV-------KMGSK--------LLKEMQRDGHVP 414



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 105/245 (42%), Gaps = 22/245 (8%)

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG---PSPNVRS---------YTIMIWK 427
           + D+   + ++   L+ G   DAI+ F + +      P    R          Y  ++W 
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWS 122

Query: 428 F------CKQNAAVY--TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LM 478
           F      C+  A++Y    L+  F     + +   +   + + G  P  +++N L+   +
Sbjct: 123 FYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYI 182

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
           K+  + DE  R+   M  SG +P ++TY++++    +    +   K++DEM+ RG  P+ 
Sbjct: 183 KLGDL-DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNG 241

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            ++T LI G     +   A +  ++ML +G     + YN     L + G      +L  +
Sbjct: 242 VTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDE 301

Query: 599 MRFSG 603
           M   G
Sbjct: 302 MSMKG 306


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 25/373 (6%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI-AMNAFAAAKERKK 297
           PG++H    ++ ++  L   +    +  ++E +  +     E   +  + A+A      +
Sbjct: 37  PGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQ 96

Query: 298 AVAIFELMNK-YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           A+ IF+ M++ +  + G+ + N LL  L  S    EA+  F   +    +PNL TY +L+
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR K   +A  + N M ++GF PDV ++  ++  L K G  SDA+KLF+ M  +G +
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT 216

Query: 416 PNVRSYTIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYD 454
           P+V  Y I+I  F K+                     N   Y  +I G     + D  ++
Sbjct: 217 PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 276

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +   M++     D  TY+ LI  +      D A R+YKEM  +G  P +  YN ++  Y 
Sbjct: 277 IWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 336

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E   ++W  M + G C    SY +LI GL    +  EA    E + EK   A  +
Sbjct: 337 RAGRIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSM 395

Query: 575 DYNKFAADLSRAG 587
            Y      L + G
Sbjct: 396 TYGVLVHGLCKNG 408



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 171/359 (47%), Gaps = 21/359 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G + +   YN+M++   RA + E  + + + M ++G  ++ ++ I +       +  +A+
Sbjct: 320 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAI 379

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +I+EL+ +    A   T   L+  L ++  L K   +L +    R   +   Y+ ++ G 
Sbjct: 380 SIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGL 439

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR   L E   V ++M   G KP+    N ++ G ++  K  DA++ F  M +KG  P V
Sbjct: 440 CREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTV 499

Query: 419 RSYTI--------------------MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y                      M+ K  K N   Y+ L+ G    +++D+  +L  +
Sbjct: 500 VTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ 559

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             E+G  PD   +N +I  +      ++A+++Y EM +    P + T+N +M+ +++  +
Sbjct: 560 ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD 619

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +E   K+WD +++ G  PD  SY + + GL S  R  +A  +L + +++G+    + +N
Sbjct: 620 FERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWN 678



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 183/420 (43%), Gaps = 61/420 (14%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           GF+ +  +Y ++++ L +       + + +EM E+G+   +  + I ++ F    +   A
Sbjct: 179 GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 238

Query: 299 VAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
             I+E L+        + + N ++  L +     E+  ++ ++K +    +L TY+ L+ 
Sbjct: 239 SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIH 298

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C   NL  A RV+ EM + G  PDVV +N ML G L+ G+  + ++L++VM+ +G   
Sbjct: 299 GLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG-CR 357

Query: 417 NVRSYTIMI---------------WKF--------------------CKQ---------- 431
            V SY I+I               W+                     CK           
Sbjct: 358 TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 417

Query: 432 ----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
                     +   Y+ +I G     R+D V  +L +M + GC P+    NA+I   ++ 
Sbjct: 418 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
            K+ D A+R +  MV  G  PT+ TYN ++    +   +     +  EM+ +G  P+  +
Sbjct: 478 SKLED-ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMIT 536

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y++L+ GL    +   A     + LEKG K  V  +N     L  +G+     +L  +M+
Sbjct: 537 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 24/285 (8%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKE 294
           GD   FA     Y+SM++ L R  + + +  +L++M + G   +       +N F  A +
Sbjct: 425 GDLDTFA-----YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASK 479

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
            + A+  F  M        V T N L+  L +++   EA  L  ++ H+ + PN+ TY++
Sbjct: 480 LEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSL 539

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G C+ K L  A  +W + ++KGFKPDV  HNI++ GL   GK  DA++L+  MK + 
Sbjct: 540 LMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK 599

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             PN+                 +  L+ GF   R  +    +   + + G  PD ++YN 
Sbjct: 600 CVPNL---------------VTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNI 644

Query: 474 LIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +K L    ++ D AV    + V  G  PT  T+N+++++    G
Sbjct: 645 TLKGLCSCHRISD-AVGFLNDAVDRGVLPTAITWNILVRAVLDNG 688


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 26/377 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M+++L   G+ ++    +  +E +G K   ++ ++   ++ +++    + A  I +
Sbjct: 229 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP--NVVSYNTIIHGYSSRGNIEGARRILD 286

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVK 362
            M     +    T   L+  + +    +EA  LFDK+      PN  TY  L+ G+C   
Sbjct: 287 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 346

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L  A    +EM+ KG  P V  +N+++  L   G+  +A  + + M+ KG  P+  +Y 
Sbjct: 347 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN 406

Query: 423 IMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  + +   A                     YT LI     R RM    DL +++ ++
Sbjct: 407 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ 466

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NA++         + A  + KEM R    P   T+N +M+   + G  E  
Sbjct: 467 GVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA 526

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R + DEM RRG  PD  SY  LI G   +    +A++  +EML  G    +L YN     
Sbjct: 527 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 586

Query: 583 LSRAGRSYVLDELAQKM 599
           L +     + +EL ++M
Sbjct: 587 LCKNQEGDLAEELLKEM 603



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 30/401 (7%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           +L+V V    R A   AF+ F    +K G      T N M+S+  +  + E    +  EM
Sbjct: 161 DLLVRVCCELRRADE-AFKCFYMMKEK-GIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 272 GEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
               + S + TF I +N      + KKA      M    FK  V + N ++         
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
           + A+ + D ++ +   P+  TY  L+ G C+   L EA  ++++M++ G  P+ V +N +
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL 338

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           ++G    G    A    + M  KG  P+V +Y +++     +                  
Sbjct: 339 IDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 398

Query: 432 --NAAVYTCLITGF---GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
             +A  Y  LI G+   GN ++    +DL  EM  +G  P  +TY +LI ++  +    E
Sbjct: 399 IPDAITYNILINGYSRCGNAKK---AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKE 455

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A  ++++++  G  P +  +N ++  +   GN E    +  EM R+   PD+ ++  L+ 
Sbjct: 456 ADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 515

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           G   + +  EA   L+EM  +G+K   + YN   +   R G
Sbjct: 516 GRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRG 556



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +S TY S++S + +  + E    + ++M E GL+ +  T+   ++ +    + ++A
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            +  + M K      V T N L+  L       EA  +  +++ +   P+  TY +L+ G
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R  N  +A  + NEM+ KG +P  V +  ++  L +  +  +A  LFE +  +G SP+
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           V  +  M+   C              GN  R    + LLKEM+ +  PPD +T+N L++ 
Sbjct: 472 VIMFNAMVDGHCAN------------GNVER---AFMLLKEMDRKSVPPDEVTFNTLMQG 516

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +   +EA  +  EM R G KP   +YN ++  Y + G+ +   +V DEM+  G  P 
Sbjct: 517 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 576

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +Y  LI  L        A + L+EM+ KG+
Sbjct: 577 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 608



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 16/324 (4%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            F + +      +   +A   F +M +      ++T N +L    +    + A +L+ ++
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 341 -KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
            + R +  + T+ +++   C+   L +A      M   GFKP+VV++N ++ G    G  
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
             A ++ + M+ KG  P+  SYT             Y  LI+G     R++    L  +M
Sbjct: 279 EGARRILDAMRVKGIEPD--SYT-------------YGSLISGMCKEGRLEEASGLFDKM 323

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            E G  P+ +TYN LI     +   + A     EMV+ G  P++ TYN+++ + F  G  
Sbjct: 324 VEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 383

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                +  EM ++G  PD  +Y +LI G      + +A+    EML KG++   + Y   
Sbjct: 384 GEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSL 443

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
              LSR  R    D+L +K+   G
Sbjct: 444 IYVLSRRNRMKEADDLFEKILDQG 467



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 34/300 (11%)

Query: 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           L R +L  ++ ++FD              +L+   C ++   EA + +  M +KG  P +
Sbjct: 147 LSRDRLSVKSSIVFD--------------LLVRVCCELRRADEAFKCFYMMKEKGIVPKI 192

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------ 431
              N ML   LK+ +   A  L+  M     S  V ++ IM+   CK+            
Sbjct: 193 ETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGF 252

Query: 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                   N   Y  +I G+ +R  ++    +L  M  +G  PD  TY +LI  M  +  
Sbjct: 253 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 312

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA  ++ +MV  G  P   TYN ++  Y   G+ E      DEM+++G  P  ++Y +
Sbjct: 313 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL 372

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+  L  + R GEA   ++EM +KG+    + YN      SR G +    +L  +M   G
Sbjct: 373 LVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKG 432



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 62/152 (40%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++D L    +R      + ++ L+++    +  DEA + +  M   G  P I T N ++ 
Sbjct: 141 LFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLS 200

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + +    EM   ++ EM R        ++ +++  L  + +  +A +++  M   G K 
Sbjct: 201 LFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP 260

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V+ YN      S  G       +   MR  G
Sbjct: 261 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 292


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 155/352 (44%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G+  ++R Y +++      R+ +    ML+EM EKGL   + T    +NA+        A
Sbjct: 142 GWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 201

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           + + ELM     K  V T N L++         +A  L +K++     P+  TY +L+ G
Sbjct: 202 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRG 261

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C   ++  A R+   M   G   D   +N ++  L K G+   A  LF+ ++ +G  PN
Sbjct: 262 QCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPN 321

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                          A  +  LI G     ++DI +  L++M   GC PD  TY++ I+ 
Sbjct: 322 ---------------AVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEH 366

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   K   E +    EM++   KP+   Y +++    +  NY +  + W EM+  GC PD
Sbjct: 367 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 426

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +YT  +     + R  EA   L EM + G+    + YN      +  G++
Sbjct: 427 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQT 478



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 165/368 (44%), Gaps = 27/368 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G+  ++ T+NS++    R  Q +    + ++M  +G    + ++   +  F       
Sbjct: 39  RSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRID 98

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +AV +F  M++      +     L++ L ++   +E  L+  ++K   + P+   Y  ++
Sbjct: 99  EAVELFGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVV 154

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C  +   EA  +  EM +KG  P VV    ++    K G+ SDA+++ E+MK +G  
Sbjct: 155 DFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG-- 212

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
                        CK N   Y  L+ GF N  ++     LL +M   G  PD +TYN LI
Sbjct: 213 -------------CKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLI 259

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           +   I    + A R+ + M   G     +TYN ++ +  + G  +    ++D +  RG  
Sbjct: 260 RGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK 319

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-----SRAGRSY 590
           P+  ++  LI GL    +   A+K+LE+M+  G       Y+ F   L     S+ G S+
Sbjct: 320 PNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 379

Query: 591 VLDELAQK 598
           +  E+ QK
Sbjct: 380 I-GEMLQK 386



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 25/344 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   + +     +   A+    LM +  ++    T N L+    R+     A+ LFDK+
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R F  ++ +Y  L+ G+C    + EA  ++ EM     +PD+  +  +++GL K G+ 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------------------VYTC--L 439
            + + +   MK  G  P+ R+Y  ++   C +  A                  V TC  +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I  +    RM     +L+ M+ RGC P+  TYNAL++    +    +A+ +  +M   G 
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P   TYN++++     G+ E   ++   M   G   D  +Y  LI  L    R+ +A  
Sbjct: 249 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 308

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + +  +G+K   + +N     L ++G+  +  +  +KM  +G
Sbjct: 309 LFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAG 352



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/389 (20%), Positives = 156/389 (40%), Gaps = 39/389 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ TYN ++         E+   +L  M   GL++ + T+   +NA        +A
Sbjct: 247 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 306

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            ++F+ +     K    T N L+  L +S K+    + L   +    TP+  TY+  +  
Sbjct: 307 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEH 366

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++K   E      EM+ K  KP  V + I++  LLK        + +  M + G +P+
Sbjct: 367 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 426

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +YT  +  +C +                    +   Y  L+ G  +  + D    +LK
Sbjct: 427 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILK 486

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPD----------------EAVRIYKEMVRSGFK 500
           +M      P+  TY  L++ L++++ + D                +   ++  M ++ F 
Sbjct: 487 QMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFL 546

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TY+ I++ + + G  E    +   M       +++ YT L+       R  +A+  
Sbjct: 547 PNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVL 606

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           +  M++ G    ++ Y    + L   G++
Sbjct: 607 VCSMIQHGFIPHLMSYQHLLSGLICEGQT 635



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 93/443 (20%), Positives = 165/443 (37%), Gaps = 88/443 (19%)

Query: 205 CGIN---LSHNLVVDVLERFRHARRPAFRFF-CWAGDKPGFAHNSRTYNSMMSIL---GR 257
           CG+N   +++NL++       H    AFR      GD  G   +  TYN++++ L   GR
Sbjct: 246 CGVNPDAVTYNLLIRGQCIDGHIE-SAFRLLRLMEGD--GLIADQYTYNALINALCKDGR 302

Query: 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
             Q  ++   LE  G K   +  TF   +N    + +   A    E M          T 
Sbjct: 303 TDQACSLFDSLETRGIKP--NAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTY 360

Query: 318 NCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +  +E+L + K  +E    + + L+    P+   YT+++    + +N     R W EM+ 
Sbjct: 361 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVS 420

Query: 377 KGFKPDVV-----------------------------------AHNIMLEGLLKIGKRSD 401
            G  PDVV                                   A+N +++G   IG+   
Sbjct: 421 SGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH 480

Query: 402 AIKLFEVMKAKGPSPNVRSYTIM--------------------IWKFCK----------- 430
           A+ + + M +    PN  +Y I+                    +WK  +           
Sbjct: 481 AVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVM 540

Query: 431 ------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N+  Y+ ++ GF    R +    L+  M+E     +   Y AL+      K  
Sbjct: 541 KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRY 600

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A  +   M++ GF P + +Y  ++      G  +  ++++     +   PD+  + V+
Sbjct: 601 LDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVI 660

Query: 545 IGGLISQ---DRSGEAYKYLEEM 564
           I GLI +   D S E    LE M
Sbjct: 661 IDGLIKKGHSDISREMIIMLERM 683



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/379 (18%), Positives = 139/379 (36%), Gaps = 74/379 (19%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ T+NS+++ L ++ + +     LE+M   G      T+   +      K  ++ 
Sbjct: 317 GIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 376

Query: 299 VA-IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           ++ I E++ K    + V+    + + L        A+   + +     P++ TYT  +  
Sbjct: 377 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 436

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR------------------ 399
           +C    L EA  V  EM   G   D +A+N +++G   IG+                   
Sbjct: 437 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 496

Query: 400 ----------------------------------SDAIKLFEVMKAKGPSPNVRSYTIMI 425
                                             +D   LF+VMK     PN  +Y+ ++
Sbjct: 497 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 556

Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
             F +                     N  +YT L+T F   +R    + L+  M + G  
Sbjct: 557 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 616

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           P  ++Y  L+  +  +   D+A  I+       + P    + +I+    + G+ ++ R++
Sbjct: 617 PHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREM 676

Query: 526 WDEMIRRGCCPDDNSYTVL 544
              + R  C P   +Y +L
Sbjct: 677 IIMLERMNCRPSHQTYAML 695


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 170/396 (42%), Gaps = 55/396 (13%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           Y S++    +A        +LE+M  KG      T+   ++     +E  +A  + E M 
Sbjct: 260 YTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMK 319

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNL 364
              F   + T + L+  L R+K   EA+ L   L++    TPN+ +Y  L+ G+ +   +
Sbjct: 320 SNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARV 379

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A +++ EM+  G  PDVV ++ ++ GL   G+ S+A    E M  K   P V  Y+ +
Sbjct: 380 NDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSV 439

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   C+                     N AVY  LI G     R+      +KEM ERGC
Sbjct: 440 ISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGC 499

Query: 465 PPDGLTYNALIKLMKIQKMPDEAV--------------------------------RIYK 492
            PDG+TY  LI  +      DEA                                 R+ +
Sbjct: 500 SPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLR 559

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            ++ +G  PT   Y  +++S  +  N    R++ ++MI  G  PD ++   L+G +  QD
Sbjct: 560 VVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQD 619

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           ++  A  +LEEM+  G K  V  Y+     L +AG+
Sbjct: 620 KAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGK 655



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 180/470 (38%), Gaps = 92/470 (19%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFET---- 263
            LS  LV  +L   ++    A  FF WAG +  F H   TYN     L R  Q E     
Sbjct: 54  QLSQRLVGVILHMVKNGE-SAMVFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRL 112

Query: 264 -------------------------------MVSMLEEMGEKGLLSME-TFKIAMNAFAA 291
                                            S+ EEM ++GL  +  T K  +NA   
Sbjct: 113 FKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCK 172

Query: 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351
           +   + A+  FE M+     A   T   L++ L R+    EA   F+++KH   PN  TY
Sbjct: 173 SGNLELALRYFEKMSSIPCAA---TWTILIDGLFRAIRVDEACYYFEEMKHTAIPNNWTY 229

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMI-------------------------------DKGFK 380
           TV++ G  +   + EA RV  EM                                 KG++
Sbjct: 230 TVVINGLVKAGKVAEAERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQ 289

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------- 431
            D + +N ++ G  ++ +   A +L E MK+    P++ +Y I+I   C+          
Sbjct: 290 GDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDL 349

Query: 432 ------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                       N   Y  LI GF    R++  Y L  EM   G  PD +TY+ LI+ + 
Sbjct: 350 LGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLC 409

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA    +EMV     P +  Y+ ++    + G  +    V+D M+  GC P+  
Sbjct: 410 NAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLA 469

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            Y  LI GL    R  +A   ++EM E+G     + Y      L R  R+
Sbjct: 470 VYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRT 519



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 181/407 (44%), Gaps = 34/407 (8%)

Query: 203 DECGINL-SHNLVVDVLERFRHARR--PAFRFF---CWAGDKPGFAHNSRTYNSMMSILG 256
           D+C  N+ S+N ++D    F  A R   A++ F     AG  P       TY++++  L 
Sbjct: 357 DDCTPNVVSYNTLID---GFSKAARVNDAYQLFLEMVTAGQHPDVV----TYSTLIRGLC 409

Query: 257 RARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
            A +     S LEEM G+K L  +  +   ++    A E   A  +F+ M     +  + 
Sbjct: 410 NAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLA 469

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
             N L+  L ++    +A+L   ++  R  +P+  TY  L+ G CR     EA  ++   
Sbjct: 470 VYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRS 529

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           +++G +    + N+++  L  +     A ++  V+ A G SP    Y  +I   CK+N  
Sbjct: 530 LEQGIEISETSCNVVIASLRCL---EQAQRVLRVVLATGNSPTAFFYATVIESLCKEN-- 584

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                       R+      LL++M   G  PDG T +AL+  M  Q     A+   +EM
Sbjct: 585 -------NLAEARQ------LLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEM 631

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDR 553
           VR G KP++ TY+ ++ + F+ G       V   +I    C PD+  Y  LI    +QD+
Sbjct: 632 VRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQ 691

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
             EA   L+E+  K     ++ YN     L R     ++ EL ++M+
Sbjct: 692 VEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMK 738


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 187/440 (42%), Gaps = 47/440 (10%)

Query: 208 NLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSIL---------- 255
           +L+ N ++D++    H+  P     FF W   +  F  +  +Y +M   L          
Sbjct: 64  SLTPNHLIDLINLNPHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQ 123

Query: 256 ----------GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
                     G+        S+LE  G     S   F + MNA+  +     A+  F L+
Sbjct: 124 SLLQFVVSRKGKNSASSVFTSVLEARGTHQ--SNLVFSVLMNAYTDSGYFSDAIQCFRLV 181

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNL 364
            K+  +    +   L + L +  L   A   +++ L   + P++  + VL+   C+   +
Sbjct: 182 RKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKI 241

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  ++ E+  +G +P VV+ N ++ G  K G      +L   M      P+V +Y+++
Sbjct: 242 NEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVL 301

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK+                    N   +T LI G     R D+  ++ ++M  +G 
Sbjct: 302 INGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGV 361

Query: 465 PPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
            PD +TYN LI  L K+  +  EA ++  EM + G KP   TY M++    + G+ E   
Sbjct: 362 KPDVITYNTLINGLCKVGDL-REAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESAL 420

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           ++  EM++ G   D+ ++T LI G   + +  EA + L EMLE G+K     Y       
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            + G      +L ++M+  G
Sbjct: 481 CKKGDVKTGFKLLKEMQCDG 500



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 162/353 (45%), Gaps = 18/353 (5%)

Query: 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIA 285
           PA+ F+    D  G+  +   +N +M  L +  +      +  E+G++GL  ++ +F   
Sbjct: 208 PAWAFYEEILDC-GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTL 266

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           +N +  +    +   +   M + +    V T + L+  L +     +A  LF ++  R  
Sbjct: 267 INGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL 326

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            PN  T+T L+ G C          ++ +M+ KG KPDV+ +N ++ GL K+G   +A K
Sbjct: 327 VPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKK 386

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           L   M  +G  P+  +YT++I   CK+                 ++   ++ KEM + G 
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEG---------------DLESALEIRKEMVKEGI 431

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             D + + ALI     +    EA R  +EM+ +G KP   TY M++  + + G+ + G K
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +  EM   G  P   +Y VL+ GL  Q +   A   L+ ML  G+    + YN
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYN 544



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 2/188 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TYN++++ L +         ++ EM ++GL   + T+ + ++      + + A
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA 419

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
           + I + M K   +        L+    R     EA+  L + L+    P+  TYT+++ G
Sbjct: 420 LEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHG 479

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  ++    ++  EM   G  P VV +N++L GL K G+  +A  L + M   G  P+
Sbjct: 480 FCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPD 539

Query: 418 VRSYTIMI 425
             +Y I++
Sbjct: 540 DITYNILL 547



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G   +  TY  ++    +    E+ + + +EM ++G+   E   +A  A  +   R+  V
Sbjct: 395 GLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI---ELDNVAFTALISGFCREGQV 451

Query: 300 AIFELMNKYKFKAGVD----TINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVL 354
              E   +   +AG+     T   ++    +    K    L  +++     P + TY VL
Sbjct: 452 IEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVL 511

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L G C+   +  A  + + M++ G  PD + +NI+LE  L+  K+
Sbjct: 512 LNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWKQ 556


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 169/377 (44%), Gaps = 23/377 (6%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME----TFKIAMN 287
           FC   +  G  H+  T   M++   R ++     S+L   G    L  E    TF   +N
Sbjct: 121 FCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVL---GRAWKLGYEPDTITFSTLVN 177

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTP 346
            F       +AVA+ + M + K +  + T++ L+  L       EA +L D++ ++ F P
Sbjct: 178 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 237

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +  TY  +L   C+  N   A  ++ +M ++  K  VV ++I+++ L K G   DA+ LF
Sbjct: 238 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 297

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             M+ KG                K +   Y+ LI G  N  + D    +L+EM  R   P
Sbjct: 298 NEMEMKG---------------IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP 342

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +T++ALI +   +    EA  +Y EM+  G  P   TYN ++  + +        +++
Sbjct: 343 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 402

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D M+ +GC PD  +Y++LI       R  +  +   E+  KG+    + YN       ++
Sbjct: 403 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 462

Query: 587 GRSYVLDELAQKMRFSG 603
           G+     EL Q+M   G
Sbjct: 463 GKLNAAKELFQEMVSRG 479



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 24/387 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TY  +++ L ++      + +  +M E+ +  S+  + I +++         A
Sbjct: 234 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 293

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++F  M     KA V T + L+  L    K    A++L + +     P++ T++ L+  
Sbjct: 294 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 353

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   L+EA  ++NEMI +G  PD + +N +++G  K     +A ++F++M +KG  P+
Sbjct: 354 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 413

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+I+I  +CK                     N   Y  L+ GF    +++   +L +
Sbjct: 414 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 473

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  RG PP  +TY  L+  +      ++A+ I+++M +S     I  YN+I+       
Sbjct: 474 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 533

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +    ++  +  +G  PD  +Y V+IGGL  +    EA     +M E G       YN
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 593

Query: 578 KFA-ADLSRAGRSYVLDELAQKMRFSG 603
               A L  +G    + EL ++M+  G
Sbjct: 594 ILIRAHLGGSGLISSV-ELIEEMKVCG 619



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 162/334 (48%), Gaps = 18/334 (5%)

Query: 257 RARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           + R  E +V +++ M E G    E T+   +N    +     A+ +F  M +   KA V 
Sbjct: 217 KGRVSEALV-LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVV 275

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
             + ++++L +     +A  LF++++ +    ++ TY+ L+GG C      +  ++  EM
Sbjct: 276 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 335

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           I +   PDVV  + +++  +K GK  +A +L+  M  +G +P+  +Y  +I  FCK+N  
Sbjct: 336 IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN-- 393

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              CL          + ++DL   M  +GC PD +TY+ LI      K  D+ +R+++E+
Sbjct: 394 ---CL-------HEANQMFDL---MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 440

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G  P   TYN ++  + Q+G     ++++ EM+ RG  P   +Y +L+ GL      
Sbjct: 441 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 500

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A +  E+M +  M   +  YN     +  A +
Sbjct: 501 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 534



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 140/301 (46%), Gaps = 17/301 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+++++ +  +  +      +  EM  +G+     T+   ++ F       +A  +F+LM
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +  + T + L+ +  ++K   +   LF ++  +   PN  TY  L+ G+C+   L
Sbjct: 406 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 465

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  ++ EM+ +G  P VV + I+L+GL   G+ + A+++FE M+    +  +  Y I+
Sbjct: 466 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 525

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C               N  ++D  + L   + ++G  PD +TYN +I  +  +   
Sbjct: 526 IHGMC---------------NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSL 570

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  ++++M   G  P   TYN++++++          ++ +EM   G   D ++  ++
Sbjct: 571 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 630

Query: 545 I 545
           I
Sbjct: 631 I 631



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 209 LSHNLVVDVL--ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +++N ++D    E   H     F      G +P       TY+ +++   +A++ +  + 
Sbjct: 380 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV----TYSILINSYCKAKRVDDGMR 435

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  E+  KGL+ +  T+   +  F  + +   A  +F+ M        V T   LL+ L 
Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +    +A  +F+K+ K R T  +  Y +++ G C    + +A  ++  + DKG KPDVV
Sbjct: 496 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVV 555

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            +N+M+ GL K G  S+A  LF  MK  G +P+  +Y I+I
Sbjct: 556 TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 16/208 (7%)

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           G++ I K +DAI LFE M    P P    +     + C           +     ++ D+
Sbjct: 74  GIVDI-KVNDAIDLFESMIQSRPLPTPIDFN----RLC-----------SAVARTKQYDL 117

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V    K ME  G   D  T   +I     +K    A  +     + G++P   T++ ++ 
Sbjct: 118 VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 177

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            +   G       + D M+     PD  + + LI GL  + R  EA   ++ M+E G + 
Sbjct: 178 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 237

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + Y      L ++G S +  +L +KM
Sbjct: 238 DEVTYGPVLNRLCKSGNSALALDLFRKM 265


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 160/320 (50%), Gaps = 16/320 (5%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  F L  ++KF    DT   +L++L + K  K     + + 
Sbjct: 68  VFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEI 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  +C+   +  A  V++ +   G KP VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGIL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            +  +L   M A G  P+V +Y+++I   CK++               +MD  ++L  EM
Sbjct: 188 DEGFRLKNAMHASGAQPDVYTYSVLINGLCKES---------------KMDEAHELFDEM 232

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            E+G  P+G+T+  LI         D A+ IYK+++  G  P + TYN ++  + + G+ 
Sbjct: 233 LEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDL 292

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +  R + DEM  +G  PD  +YT LI G   +     A++Y ++M+E+ ++   + Y   
Sbjct: 293 KQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTAL 352

Query: 580 AADLSRAGRSYVLDELAQKM 599
            + L + GRS   +++ ++M
Sbjct: 353 ISGLCKEGRSVDAEKMLREM 372



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 161/350 (46%), Gaps = 34/350 (9%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L    + D LE FR +R   F    W      F    +  + +M +    + F+ +    
Sbjct: 77  LESGFLRDALECFRLSREHKF----WVP----FDTCRKVLDHLMKL----KYFKLVWGFY 124

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           +E+ E G   S+  F I M+ F    E + A  +F+ + K+  K  V + N L+    + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKM 184

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            +  E   L + +      P++ TY+VL+ G C+   + EA  +++EM++KG  P+ V  
Sbjct: 185 GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTF 244

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
             +++G  K GK   A+++++ + ++G SP++ +Y  +I+ FCK+               
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSM 304

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                +   YT LI G      ++  ++  K+M E     D + Y ALI  +  +    +
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVD 364

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           A ++ +EM+  G KP   TY ++M  + + G+   G K+  EM R G  P
Sbjct: 365 AEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVP 414



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 17/226 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY+ +++ L +  + +    + +EM EKGL+ +  TF   ++      +   A+ I++ +
Sbjct: 208 TYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQI 267

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                   + T N L+    +    K+ + L D++  +   P+  TYT L+ G C+  +L
Sbjct: 268 LSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDL 327

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A     +MI++  + D V +  ++ GL K G+  DA K+   M + G  P+  +YTI+
Sbjct: 328 ETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIV 387

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
           + +FCK N  V T      G++        LLKEM+  G  P  +T
Sbjct: 388 MNEFCK-NGDVNT------GSK--------LLKEMQRDGHVPSVVT 418



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 91/197 (46%), Gaps = 16/197 (8%)

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           E+++   P+ ++  + I++ +FCK+            G  R   +V+D + +    G  P
Sbjct: 126 EILECGYPA-SLYFFNILMHRFCKE------------GEIRLAQLVFDAITKW---GLKP 169

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
             +++N L+       + DE  R+   M  SG +P ++TY++++    +    +   +++
Sbjct: 170 SVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELF 229

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           DEM+ +G  P+  ++T LI G     +   A +  +++L +G+   ++ YN       + 
Sbjct: 230 DEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKK 289

Query: 587 GRSYVLDELAQKMRFSG 603
           G      +L  +M   G
Sbjct: 290 GDLKQTRDLIDEMSMKG 306


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 25/371 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF---AAAKERKKAV 299
           N  T+N  ++ L RA +       +E+M   G+  ++ T+   ++ +    +A +  KA 
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGW 358
           A  + M   K      T N L++   + +    A+  F+++ K    PN+ TY  L+ G 
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGL 318

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C    L EA  +W++M+  G KP++V +N ++ G  K     +A K+F+ +  +   PNV
Sbjct: 319 CNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNV 378

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            ++  MI  +CK+                    N + Y CLI G   ++ +    +LL E
Sbjct: 379 ITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNE 438

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           ME +G   D +TYN LI  +        A ++  EM   G KP   TYN +M  Y   G 
Sbjct: 439 MENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGK 498

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +    V   M +    P+  +Y VLI G    ++   A   L EMLEKG+      Y+ 
Sbjct: 499 LKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDI 558

Query: 579 FAADLSRAGRS 589
              ++   G S
Sbjct: 559 VRLEMLEKGFS 569



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 176/415 (42%), Gaps = 44/415 (10%)

Query: 228 AFRFFCWA--------GDKPG-----FAHNSRTYNSMMSILGRARQFETMV------SML 268
             RFF W+        G +P      F  NS+ Y+ + S L    + E         S+L
Sbjct: 61  VLRFFKWSQKEYRLSYGLEPTSKVLHFLANSKRYSKVRSFLDSFVKNEKHTVSSVFHSLL 120

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            + G  G  ++    + + A+    E   A   F     Y FK  + + N LL  L +  
Sbjct: 121 LDGGRPGATAL-IIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKEN 179

Query: 329 LPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              + + ++ + +K R   NL T+ + + G CR   L +A     +M   G  P+VV +N
Sbjct: 180 KIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYN 239

Query: 388 IMLEGLLK---IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
            +++G  K    GK   A    + M A    PN  ++  +I  FCK              
Sbjct: 240 TLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEM 299

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N   Y  LI G  N  +++   DL  +M   G  P+ +TYNALI     +KM 
Sbjct: 300 QKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMM 359

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA +++ ++ +    P + T+N ++ +Y + G  E G  +   M+  G  P+ ++Y  L
Sbjct: 360 KEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCL 419

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           I GL  +     A + L EM  KG+K  V+ YN     L +  +S   ++L  +M
Sbjct: 420 IAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEM 474



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFA 290
            C +    G   N  TYN +++ L R +  +    +L EM  KGL   + T+ I ++   
Sbjct: 400 LCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLC 459

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLT 349
              + + A  +   M     K    T N L++        K A  +  ++ K R  PN+ 
Sbjct: 460 KNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVV 519

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           TY VL+ G+C++  L  A  + NEM++KG  P+   ++I+   +L+ G   D
Sbjct: 520 TYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKGFSPD 571


>gi|255561709|ref|XP_002521864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538902|gb|EEF40500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 428

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 5/244 (2%)

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI--MIWKFCKQNAAVYT 437
           +P++ A N++L+ L K     DA  +F+ +K K    +  S  +  MI   C  + + Y 
Sbjct: 178 QPEINAFNLLLDALCKCSLVEDAETIFKRVKNKNDRMDECSKLLGHMINSGCLPDVSTYK 237

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+ G     ++D  Y +L+EM  +G PPD +TYN  +K++      DEA+R+Y  M+  
Sbjct: 238 ELMEGMCLAGKIDEAYRVLQEMGNKGYPPDIVTYNCFLKVLCENMKSDEALRLYGRMIEV 297

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
              P++ TYNM++  YF+ G+ +     WDEM  RGC  D ++Y+V+I GL   ++  +A
Sbjct: 298 DCLPSVQTYNMLISMYFEMGDPDGAFDTWDEMHNRGCAKDIDTYSVMIDGLFGCNKVQDA 357

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAET 617
              +E+++ KGMK P   ++ F   LS  G    + +L++ MR   K+  S++  R+A  
Sbjct: 358 CLLIEDVMTKGMKLPYQKFDSFLMKLSEIGDLQTIHKLSEHMR---KYYNSSMARRFALN 414

Query: 618 TKNR 621
            K +
Sbjct: 415 EKRK 418



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 166/365 (45%), Gaps = 55/365 (15%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           +ME  L++  + L+ +LVV+VL R R   + AFRFF WAG +  + H    YN MM IL 
Sbjct: 58  HMEKALNQLNLELTTDLVVEVLLRLRFEEKIAFRFFMWAGRQQNYTHEPCAYNEMMDILS 117

Query: 257 ----RARQFETMVSMLEEM--GEKGLLSMETFKIAMNAFAAAK-------ERKKAVAIFE 303
               + +QF  +  ML+ M    K ++ +E     +  +            +KK + +  
Sbjct: 118 STKYKVKQFRIVCDMLDYMKRNNKNIVPVEVLLTILRNYTQKYLTHVQKFAKKKRIRV-- 175

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------------------FT 345
                K +  ++  N LL+ L +  L ++A+ +F ++K++                    
Sbjct: 176 -----KTQPEINAFNLLLDALCKCSLVEDAETIFKRVKNKNDRMDECSKLLGHMINSGCL 230

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+++TY  L+ G C    + EA RV  EM +KG+ PD+V +N  L+ L +  K  +A++L
Sbjct: 231 PDVSTYKELMEGMCLAGKIDEAYRVLQEMGNKGYPPDIVTYNCFLKVLCENMKSDEALRL 290

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           +  M      P+V++Y ++I  + +                   D  +D   EM  RGC 
Sbjct: 291 YGRMIEVDCLPSVQTYNMLISMYFEMGDP---------------DGAFDTWDEMHNRGCA 335

Query: 466 PDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            D  TY+ +I  L    K+ D  + I ++++  G K     ++  +    + G+ +   K
Sbjct: 336 KDIDTYSVMIDGLFGCNKVQDACLLI-EDVMTKGMKLPYQKFDSFLMKLSEIGDLQTIHK 394

Query: 525 VWDEM 529
           + + M
Sbjct: 395 LSEHM 399


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 205/466 (43%), Gaps = 75/466 (16%)

Query: 145 SSVTDDNQDSDGECDGNNSESEITSV---SYKSTADPREIE------------RVCKVID 189
           +SV+D  ++ +G  D + S   I S    + K T +   IE             VC++I 
Sbjct: 82  ASVSDGAEEEEGSSDDDESLEFINSFHGSNDKQTQNIASIEIDDSEFRHPVVREVCRLIT 141

Query: 190 ELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYN 249
              + + N E  L     +L  +LV  VL R +   R A  FF WA  +  ++H+   Y 
Sbjct: 142 LSSAWNPNFEGRLRHLLRSLKPSLVCAVL-RSQADERVALNFFYWADRQWRYSHHPLVYY 200

Query: 250 SMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308
           +++ +L + +  +    +L  M  +G+ LS E F   M +++ A + + A+ +  LM   
Sbjct: 201 TLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQ-- 258

Query: 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL----TTYTVLLGGWCRVKNL 364
             KAGV+                              PNL    TT  VL+ G C+   L
Sbjct: 259 --KAGVE------------------------------PNLSICNTTIYVLVKG-CK---L 282

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R    M   G KPD+V +N +++G   + +  DA++L   + +KG  P+  SY  +
Sbjct: 283 EKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTV 342

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM-EERGCPPDGLTYNALIKLMKIQKM 483
           +   CK+               ++++ V  L+++M ++    PD +TYN LI ++     
Sbjct: 343 MGFLCKE---------------KKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGH 387

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            D+A+   KE    GF      Y+ I+ S+ Q G  +  + +  +M  R C PD  +YT 
Sbjct: 388 ADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTA 447

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           ++ G     R  EA K L++M + G K   + Y      L  +G+S
Sbjct: 448 IVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKS 493



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 179/408 (43%), Gaps = 37/408 (9%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
            +++N ++ +L +  HA   A  F   A DK GF  +   Y++++    +  + +   S+
Sbjct: 372 QVTYNTLIHMLSKHGHAD-DALAFLKEAEDK-GFHIDKVGYSAIVHSFCQKGRMDEAKSL 429

Query: 268 LEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           + +M  +     + T+   ++ F       +A  + + M K+  K    +   LL  L  
Sbjct: 430 VIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCH 489

Query: 327 SKLPKEAQLLFD-KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           S    EA+ + +   +H +TPN  TY V++ G+ R   L EA  +  EM++KGF P  V 
Sbjct: 490 SGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVE 549

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------- 430
            N++++ L +  K  +A K  E    KG + NV ++T +I  FC+               
Sbjct: 550 INLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMY 609

Query: 431 -----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                 +A  YT L    G + R+D   +L+ +M  +G  P  +T+ ++I         D
Sbjct: 610 LSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVD 669

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           + + +   MV+   KP    YN +++     GN E   K+  +++R     D N+  VL+
Sbjct: 670 DMLNLLDRMVKR--KPFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLM 727

Query: 546 GGLISQDRSGEAYKYLEEML-----------EKGMKAPVLDYNKFAAD 582
              + +  +  AYK   +M            EK  K  VLD N   AD
Sbjct: 728 ESCLKKGVALSAYKVACQMFRRNLTPDLKLCEKVTKKLVLDGNLVEAD 775



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 152/354 (42%), Gaps = 22/354 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKK 297
           G   +  +Y ++M  L + ++ E +  ++E+M +   L  +  T+   ++  +       
Sbjct: 331 GCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADD 390

Query: 298 AVAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           A+A  +      F   K G   I       GR  + +   L+ D       P++ TYT +
Sbjct: 391 ALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGR--MDEAKSLVIDMYSRSCNPDVVTYTAI 448

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+CR+  + EA ++  +M   G KP+ V++  +L GL   GK  +A ++  V +    
Sbjct: 449 VDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWW 508

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           +PN  +Y +++  F ++      C               DL +EM E+G  P  +  N L
Sbjct: 509 TPNAITYGVVMHGFRREGKLSEAC---------------DLTREMVEKGFFPTPVEINLL 553

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I+ +   +   EA +  +E +  G    +  +  ++  + Q G+ E    V ++M     
Sbjct: 554 IQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNK 613

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +YT L   L  + R  EA + + +ML KG+    + +        + GR
Sbjct: 614 HPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGR 667


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 181/431 (41%), Gaps = 43/431 (9%)

Query: 216 DVLERF-RHARRPAFRFF-------CWAGD------------KPGFAHNSRTYNSMMSIL 255
           +VL++F  +   P   FF       C  GD              G   N  TYNS++   
Sbjct: 378 EVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437

Query: 256 GRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
              +  E     +++M EKG+L ++ET+   ++ +  +    +   I E M K   K  V
Sbjct: 438 CEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNV 497

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            +  CL+  L +     EA+++   + HR   PN   Y +L+ G C    L +A R ++E
Sbjct: 498 ISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDE 557

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----- 428
           M+ +   P +V +NI++ GL K GK  +A  L   +  KG S +V +Y  +I  +     
Sbjct: 558 MVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGN 617

Query: 429 ---------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                           K     Y  LI G G +  + +V  + +EM +    PD + YNA
Sbjct: 618 VQKALELYETMKKSGIKPTLNTYHRLIAGCG-KEGLVLVEKIYQEMLQMNLVPDRVIYNA 676

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI          +A  ++  M   G +P   TYN ++  +F+ G     + + ++M  RG
Sbjct: 677 LIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRG 736

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             P   +Y +LI G         AY +  EM E G    V   +     L   GRS+  D
Sbjct: 737 LIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDAD 796

Query: 594 ELAQKMRFSGK 604
            +  +M   GK
Sbjct: 797 VICSEMNMKGK 807



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 162/361 (44%), Gaps = 22/361 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           K G   +  + N  +  L   +++E  + +  E+ E GL   +  +  A+ A     + K
Sbjct: 140 KDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLK 199

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL 355
           +A+ +   M +     GV   N ++  L + K  K+A+ LFD+ L  R  PN  TY  L+
Sbjct: 200 RAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLI 259

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+C+V  L EA  +   M  +  +P ++  N +L GL +     +A ++ E M+  G  
Sbjct: 260 DGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFV 319

Query: 416 PNVRSYTIMI---WKFCKQNAAV---------------YTC--LITGFGNRRRMDIVYDL 455
           P+  +YT +     K    +A++               YTC  L+        M+   ++
Sbjct: 320 PDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEV 379

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           LK+  E G  P G+ +N ++         ++A    ++M   G +P   TYN ++K + +
Sbjct: 380 LKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCE 439

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
             N E   K   +M+ +G  P+  +Y  LI G          ++ LEEM +KG+K  V+ 
Sbjct: 440 MKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVIS 499

Query: 576 Y 576
           Y
Sbjct: 500 Y 500



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 22/275 (8%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           LL     SK+  E+  L+  +K     P++ +  + L      K   +  ++++E+++ G
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG 177

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------- 431
            +PD   +   ++  +K+G    AI+L   MK  G SP V  Y ++I   CK+       
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237

Query: 432 -------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                        N   Y  LI G+    +++  +++ + M+     P  +T+N+L+  +
Sbjct: 238 KLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGL 297

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +M +EA R+ +EM   GF P   TY  +   + + GN +    + +E +R+G    D
Sbjct: 298 CRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILD 357

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + ++L+  L  +    +A + L++ LE G+ APV
Sbjct: 358 YTCSILLNALCKEGNMEKAEEVLKKFLENGL-APV 391



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P +  Y V++GG C+ K + +A ++++EM+D+   P+ + +N +++G  K+G+  +A  
Sbjct: 214 SPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFN 273

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           + E MK +   P + ++  ++   C+                + M+    +L+EME  G 
Sbjct: 274 IRERMKVENVEPTIITFNSLLNGLCRA---------------QMMEEAQRVLEEMEVYGF 318

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TY  L          D ++ + +E VR G +   +T ++++ +  + GN E   +
Sbjct: 319 VPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEE 378

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           V  + +  G  P    +  ++ G        +AY  +E+M   G++   + YN   
Sbjct: 379 VLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLV 434



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           S++ +L+ +MK  G  P+V S  + +                   + +R +    L  E+
Sbjct: 129 SESAELYMLMKKDGVLPSVASLNLFLESLV---------------STKRYEDTLQLFSEI 173

Query: 460 EERGCPPDGLTY----NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            E G  PD   Y     A +KL  +++    A+ +   M R G  P +  YN+++    +
Sbjct: 174 VESGLRPDQFMYGKAIQAAVKLGDLKR----AIELMTCMKRGGVSPGVFVYNVVIGGLCK 229

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               +   K++DEM+ R   P+  +Y  LI G     +  EA+   E M  + ++  ++ 
Sbjct: 230 EKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIIT 289

Query: 576 YNKFAADLSRA 586
           +N     L RA
Sbjct: 290 FNSLLNGLCRA 300



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M++ G  P   + N  ++ +   K  ++ ++++ E+V SG +P    Y   +++  + G+
Sbjct: 138 MKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGD 197

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +   ++   M R G  P    Y V+IGGL  + R  +A K  +EML++ +    + YN 
Sbjct: 198 LKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNT 257

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
                 + G      +L +      + +V NV
Sbjct: 258 LIDGYCKVG------QLEEAFNIRERMKVENV 283


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 22/345 (6%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L+EM   G+ ++   +   ++A+   K+  +   + ++M     +  V T   L++ L 
Sbjct: 165 LLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLS 224

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++   + + +F+++K +  + ++  Y+ ++  +CR  N+  A  V++E +  G +P+  
Sbjct: 225 AARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEH 284

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA---------- 434
            +  ++ G  KIG+   A  L   M+ +G   N   +  MI  +C++N            
Sbjct: 285 TYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIM 344

Query: 435 ----------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  L  G     RMD   +LL+ M E+G  P+ ++Y  LI +   +   
Sbjct: 345 EKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDM 404

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA R+++EM  +G +P++ TYN++M  Y + G+     +  +EM ++G  PD  SY  L
Sbjct: 405 VEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAAL 464

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           + G     +   A +  EEM ++G K  ++ Y    + L++ GRS
Sbjct: 465 VHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRS 509



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 176/386 (45%), Gaps = 30/386 (7%)

Query: 209 LSHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           LS ++VVD      R  HAR+           + G   N+  YNS++    R +  + + 
Sbjct: 144 LSASVVVDGYCKSGRVAHARQ-----LLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 198

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
            ML+ M  +G+  ++ T+ I ++  +AA++  K  A+FE M        V   + ++   
Sbjct: 199 EMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY 258

Query: 325 GRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R+   + A  +FD+ + +   PN  TY  L+ G+C++  +  A  +  +M  +G   + 
Sbjct: 259 CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ 318

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------I 423
           +  N M++G  +      A+++  +M+  G   +V +Y                     I
Sbjct: 319 IVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRI 378

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI K  + N   YT LI+   N   M     L +EM   G  P  +TYN ++     +  
Sbjct: 379 MIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGS 438

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA R   EM + G  P I++Y  ++  +   G  ++  ++++EM +RG  P+  +YT 
Sbjct: 439 IREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTA 498

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGM 569
           LI GL  + RS EA++  + ML  G+
Sbjct: 499 LISGLAKEGRSEEAFQLYDNMLGDGL 524



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 139/313 (44%), Gaps = 30/313 (9%)

Query: 198 MEAVLDEC-GINLSHNL-----VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           +EAV +E    NLS ++     V++   R  + RR +  F    G+  G   N  TY ++
Sbjct: 232 VEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGN--GIEPNEHTYGAL 289

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++   +  Q E    ++ +M  +G+ ++   F   ++ +       KA+ I  +M K   
Sbjct: 290 INGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGI 349

Query: 311 KAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  V T N L   L R+    EA+ LL   ++    PN  +YT L+   C   +++EA R
Sbjct: 350 ELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARR 409

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           ++ EM   G +P +V +N+M++G +K G   +A +    M+ KG  P++ SY  ++   C
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHC 469

Query: 430 --------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                               K N   YT LI+G     R +  + L   M   G  PD  
Sbjct: 470 VNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDA 529

Query: 470 TYNALIKLMKIQK 482
            Y+AL+  +   K
Sbjct: 530 LYSALVGSLHTDK 542



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 20/264 (7%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           QLL +  +H    N   Y  LL  + R K+      +   M ++G +P V  + I+++GL
Sbjct: 164 QLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 223

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
                 +    +FE MK+K  S +V  Y+ +I  +C+                     N 
Sbjct: 224 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  LI GF    +M+    L+ +M+ RG   + + +N +I     + M D+A+ I   
Sbjct: 284 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMI 343

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + G +  ++TYN +     +    +  + +   MI +G  P+  SYT LI    ++  
Sbjct: 344 MEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGD 403

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYN 577
             EA +   EM   G +  ++ YN
Sbjct: 404 MVEARRLFREMAGNGAEPSLVTYN 427



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           +V++ G+C+   +  A ++ +EM   G K + + +N +L+   +        ++ +VM+ 
Sbjct: 147 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 206

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +G  P V +YTI               L+ G    R +  V  + +EM+ +    D   Y
Sbjct: 207 EGIEPTVGTYTI---------------LVDGLSAARDITKVEAVFEEMKSKNLSGDVYFY 251

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           +++I           A  ++ E V +G +P  HTY  ++  + + G  E    +  +M  
Sbjct: 252 SSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV 311

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           RG   +   +  +I G   ++   +A +    M + G++  V  YN  A  L RA R   
Sbjct: 312 RGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANR--- 368

Query: 592 LDELAQKMRF 601
           +DE    +R 
Sbjct: 369 MDEAKNLLRI 378


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 22/340 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +S TY S++S + +  + E    +LE+M E GLL +  T+   ++ +    +  KA
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKA 360

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
               + M +      V T N L+  L    K+ +   ++ D       P+  TY +L+ G
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  N  +A  + +EMI KG +P +V +  ++  L K  +   A  LFE +  +G SP+
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPD 480

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           +  +  +I   C                      +   Y  L+ G     +++   +LLK
Sbjct: 481 LIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLK 540

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM+ RG  PD ++YN LI     +   ++A  I  EM+  GF PT+ TYN +++   +  
Sbjct: 541 EMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQ 600

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
             ++  ++  EM+ +G  PDD++Y  LI G+   D S EA
Sbjct: 601 QGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 169/381 (44%), Gaps = 26/381 (6%)

Query: 247 TYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
           T+N M+++L   G+ ++ +  +  +E +G K   ++ T+   ++ + +    + A  + +
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKP--NVVTYNTVIHGYCSRGRVEGARMVLD 295

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVK 362
           +M     +    T   L+  + +    +EA  + +K+K     P   TY  L+ G+C   
Sbjct: 296 IMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG 355

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
           +L++A    +EM+ +   P V  +N+++  L   GK  +A  + + M   G  P+  +Y 
Sbjct: 356 DLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYN 415

Query: 423 IMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEER 462
           I+I  +C+   A                     YT LI     R RM    DL +++   
Sbjct: 416 ILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIRE 475

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G  PD + +NALI         D A  + KEM +    P   TYN +M+   + G  E  
Sbjct: 476 GASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEA 535

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
           R++  EM RRG  PD  SY  LI G   +    +A+   +EML  G    +L YN     
Sbjct: 536 RELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQG 595

Query: 583 LSRAGRSYVLDELAQKMRFSG 603
           L +  +  + +EL ++M   G
Sbjct: 596 LCKNQQGDLAEELLKEMVSKG 616



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 169/385 (43%), Gaps = 29/385 (7%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAM 286
           AF  F    +K G      T+N+M+S+  +  Q ET+  +  EM    + S + TF I +
Sbjct: 185 AFECFDMMKEK-GVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMI 243

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           N      + KKA      M     K  V T N ++         + A+++ D +K+R   
Sbjct: 244 NVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVE 303

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TY  L+ G C+   L EA  +  +M + G  P  V +N +++G    G    A   
Sbjct: 304 PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGY 363

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF-- 443
            + M  +   P V +Y ++I     +                    ++  Y  LI G+  
Sbjct: 364 RDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCR 423

Query: 444 -GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
            GN ++    ++L  EM  +G  P  +TY +LI ++  +     A  ++++++R G  P 
Sbjct: 424 CGNAKK---AFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPD 480

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           +  +N ++  +   GN +    +  EM +R   PD+ +Y  L+ G   + +  EA + L+
Sbjct: 481 LIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLK 540

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAG 587
           EM  +G++   + YN   +  S+ G
Sbjct: 541 EMKRRGIRPDHISYNTLISGYSKRG 565



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 43/387 (11%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           NLS +L+   L         A +F    G K     + +T    ++++ R+   ++ + +
Sbjct: 79  NLSPSLISATLLSLHKKSDLALQFVTHIGFK---GLDIKTKCLAVAVVSRSPSPKSTLHL 135

Query: 268 LEEMGEKGLLSMETFKIAMNAFAAAKER--KKAVAIFELMNKY--KFKAGVDTINCLLEN 323
           L++  E  +  +   K   +  A  ++R   K+  +F+++ +   + K G D   C    
Sbjct: 136 LKQTIESRVAGV---KDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFEC---- 188

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
                        FD +K +   P + T+  +L  + ++        ++ EM     K  
Sbjct: 189 -------------FDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKST 235

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V   NIM+  L K GK   A      M+  G  PNV +Y  +I  +C +           
Sbjct: 236 VYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE------- 288

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
            G R  +DI       M+ RG  PD  TY +LI  M      +EA  I ++M   G  PT
Sbjct: 289 -GARMVLDI-------MKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPT 340

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN ++  Y   G+        DEM+RR   P  ++Y +LI  L  + +  EA   ++
Sbjct: 341 AVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIK 400

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRS 589
           +M + G+    + YN       R G +
Sbjct: 401 DMGDSGIVPDSITYNILINGYCRCGNA 427


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 162/344 (47%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   +LE+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEEN 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+ G+ +   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           ++  +L   M+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ K+M  +   PD +TYN LI  +  +    +A  +  EM+  G 
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 22/304 (7%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M+ F    E + A ++F+ + K+  +  
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+    +     E   L + ++     P++ TY+VL+ G C+   + +A  +++
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+DKG  P+ V    +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK+ 
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++  K M +     D + Y 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 533 GCCP 536
           G  P
Sbjct: 411 GYKP 414



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +     +A +LFD++  +   PN  T+T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I   CK+                    +   YT LI+G     R      +L+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           EM   G  P+  TY  +I     +       ++ KEM R G+KP++ T
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 165/363 (45%), Gaps = 17/363 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
            GF     TY S+++ LG+    E + S+  EM ++G   +++ +   ++A    +   +A
Sbjct: 1212 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQA 1271

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
            + I + M        + T N L+  L      ++A+  L + ++    PN  +YT L+ G
Sbjct: 1272 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 1331

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            +C    LM A  +  EM+ +G  PDVV    ++ GL+  GK S+A+ + E M  +   P+
Sbjct: 1332 FCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 1391

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            V  Y ++I   CK               +R +    ++L+EM E+   PD   Y  LI  
Sbjct: 1392 VNIYNVLISGLCK---------------KRMLPAAKNILEEMLEKNVQPDEFVYATLIDG 1436

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                +   +A +I++ M   G  P I + N ++K Y Q G           M + GC PD
Sbjct: 1437 FIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPD 1496

Query: 538  DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            + +YT +I G   Q     A ++L +M+++  K  V+ Y+       + G +   + L  
Sbjct: 1497 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFA 1556

Query: 598  KMR 600
             M+
Sbjct: 1557 NMQ 1559



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 21/281 (7%)

Query: 318  NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
            N L++   R        LL  +++ + F P L TY  L+    +  +L + G ++ EM  
Sbjct: 1186 NVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRK 1245

Query: 377  KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----- 431
            +GF P+V  +N +++ L K    + A+ + + M A G  P++ ++  +I   C +     
Sbjct: 1246 RGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRK 1305

Query: 432  ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                           N   YT LI GF  R  + +  DLL EM  RG  PD +T+ ALI 
Sbjct: 1306 AEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIH 1365

Query: 477  LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             + +     EA+ + ++M      P ++ YN+++    +       + + +EM+ +   P
Sbjct: 1366 GLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQP 1425

Query: 537  DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            D+  Y  LI G I  +  G+A K  E M  KG+   ++  N
Sbjct: 1426 DEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCN 1466



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 21/311 (6%)

Query: 244  NSRTYNSMMSILGRARQFETMVS---MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
            N  +Y  +  I G   + E MV+   ++E MG      + TF   ++    A +  +A+ 
Sbjct: 1321 NQLSYTPL--IHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALI 1378

Query: 301  IFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
            + E M + +    V+  N L+  L + + LP    +L + L+    P+   Y  L+ G+ 
Sbjct: 1379 VREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFI 1438

Query: 360  RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            R +NL +A +++  M  KG  PD+V+ N M++G  + G  S+AI     M+  G      
Sbjct: 1439 RSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG------ 1492

Query: 420  SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                     C  +   YT +I+G+  +  ++     L +M +R C P+ +TY++LI    
Sbjct: 1493 ---------CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC 1543

Query: 480  IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 D A  ++  M      P + TY +++ S F+          ++ M+   C P+D 
Sbjct: 1544 KTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDV 1603

Query: 540  SYTVLIGGLIS 550
            +   L+ GL S
Sbjct: 1604 TLHYLVNGLTS 1614



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 19/257 (7%)

Query: 346  PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            P++  Y VL+ G+CR  ++     +  EM  KGF P +V +  ++  L K G       L
Sbjct: 1180 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSL 1239

Query: 406  FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            F  M+ +G SPNV+ Y  +I   CK  +A    +I               LK+M   GC 
Sbjct: 1240 FLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVI---------------LKQMFASGCD 1284

Query: 466  PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            PD +T+N LI  +  +    +A    +E +R    P   +Y  ++  +   G   +   +
Sbjct: 1285 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1344

Query: 526  WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
              EM+ RG  PD  ++  LI GL+   +  EA    E+M E+ +   V  YN   + L +
Sbjct: 1345 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1404

Query: 586  ----AGRSYVLDELAQK 598
                     +L+E+ +K
Sbjct: 1405 KRMLPAAKNILEEMLEK 1421



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 129/304 (42%), Gaps = 19/304 (6%)

Query: 288  AFAAAKERKKAVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRF 344
            A+A A    KA  + E +  +Y     V   N LL+ L   +   +A+ L+D++  K   
Sbjct: 1085 AYADAGMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSG 1144

Query: 345  TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
              N +T  VL+ G C  + + E  ++       G  P VV +N++++G  + G     + 
Sbjct: 1145 ADNYST-CVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLL 1203

Query: 405  LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            L   M+ KG  P +                 Y  LI   G +  ++ +  L  EM +RG 
Sbjct: 1204 LLGEMETKGFLPTL---------------VTYGSLINWLGKKGDLEKIGSLFLEMRKRGF 1248

Query: 465  PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             P+   YN++I  +   +   +A+ I K+M  SG  P I T+N ++      G+      
Sbjct: 1249 SPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEH 1308

Query: 525  VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
               E IRR   P+  SYT LI G   +     A   L EM+ +G    V+ +      L 
Sbjct: 1309 FLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLV 1368

Query: 585  RAGR 588
             AG+
Sbjct: 1369 VAGK 1372



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 15/238 (6%)

Query: 366  EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            +A ++++EM+ K    D  +  +++ GL    +  + +KL E     G  P+V  Y ++I
Sbjct: 1130 DARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLI 1189

Query: 426  WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              +C+               R  M     LL EME +G  P  +TY +LI  +  +   +
Sbjct: 1190 DGYCR---------------RGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLE 1234

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +   ++ EM + GF P +  YN ++ +  +  +      +  +M   GC PD  ++  LI
Sbjct: 1235 KIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLI 1294

Query: 546  GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             GL  +    +A  +L E + + +    L Y          G   V  +L  +M   G
Sbjct: 1295 TGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRG 1352



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 114/307 (37%), Gaps = 37/307 (12%)

Query: 248  YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
            YN ++S L + R      ++LEEM EK +   E  +   ++ F  ++    A  IFE M 
Sbjct: 1395 YNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 1454

Query: 307  KYKFKAGVDTINCLLENLGRSKLPKEAQL------------------------------- 335
                   + + N +++   +  +  EA L                               
Sbjct: 1455 HKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLN 1514

Query: 336  -----LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
                 L D +K +  PN+ TY+ L+ G+C+  +   A  ++  M  +   P+VV + I++
Sbjct: 1515 GALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILI 1574

Query: 391  EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
              L K  K   A   FE M     SPN  +   ++         V   +          D
Sbjct: 1575 GSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKD 1634

Query: 451  IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             +  + K++      P    YNA+I  +    M  EA+     M + G+ P   T+  ++
Sbjct: 1635 ALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLL 1694

Query: 511  KSYFQTG 517
              +   G
Sbjct: 1695 YGFCSVG 1701


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 167/362 (46%), Gaps = 17/362 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G AHN  T + M++   R R+     S + ++ + G   +  TF   +N         +A
Sbjct: 216 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 275

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + + + M +   K  + TIN L+  L  S    EA LL DK+ ++   PN  TY  +L  
Sbjct: 276 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 335

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+      A  +  +M ++  K D V ++I+++GL K G   +A  LF  M+ KG + N
Sbjct: 336 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 395

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y I+I  FC               N  R D    LL++M +R   P+ +T++ LI  
Sbjct: 396 IITYNILIGGFC---------------NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS 440

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA  ++KEM+  G  P   TY  ++  + +  + +   ++ D M+ +GC P+
Sbjct: 441 FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 500

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             ++ +LI G    +R  +  +   +M  +G+ A  + YN         G+  V  EL Q
Sbjct: 501 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 560

Query: 598 KM 599
           +M
Sbjct: 561 EM 562



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 163/362 (45%), Gaps = 26/362 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+ TY  +++++ ++ Q    + +L +M E+ + L    + I ++          A
Sbjct: 321 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 380

Query: 299 VAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             +F  M        + T N L+    N GR      A+LL D +K +  PN+ T++VL+
Sbjct: 381 FNLFNEMEMKGITTNIITYNILIGGFCNAGR--WDDGAKLLRDMIKRKINPNVVTFSVLI 438

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             + +   L EA  +  EMI +G  PD + +  +++G  K      A ++ ++M +KG  
Sbjct: 439 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 498

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           PN+R++ I+I  +CK N                       Y  LI GF    ++++  +L
Sbjct: 499 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 558

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            +EM  R  PP+ +TY  L+  +      ++A+ I++++ +S  +  I  YN+I+     
Sbjct: 559 FQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 618

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
               +    ++  +  +G  P   +Y ++IGGL  +    EA     +M E G       
Sbjct: 619 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWT 678

Query: 576 YN 577
           YN
Sbjct: 679 YN 680



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A ++ TY S++    +    +    M++ M  KG   ++ TF I +N +  A      
Sbjct: 461 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 520

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + +F  M+     A   T N L++    LG+  + KE  L  + +  +  PN+ TY +LL
Sbjct: 521 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE--LFQEMVSRKVPPNIVTYKILL 578

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      +A  ++ ++     + D+  +NI++ G+    K  DA  LF  +  KG  
Sbjct: 579 DGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 638

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P V++Y IMI   CK+       L               L ++MEE G  PDG TYN LI
Sbjct: 639 PGVKTYNIMIGGLCKKGPLSEAEL---------------LFRKMEEDGHAPDGWTYNILI 683

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +         ++V++ +E+ R GF     T  M++
Sbjct: 684 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVI 718



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 118/257 (45%), Gaps = 15/257 (5%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           NL T ++++  +CR + L  A     ++I  G++P+ +  + ++ GL   G+ S+A++L 
Sbjct: 220 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 279

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M   G  P++ +   ++   C         L               L+ +M E GC P
Sbjct: 280 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAML---------------LIDKMVEYGCQP 324

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TY  ++ +M        A+ + ++M     K     Y++I+    + G+ +    ++
Sbjct: 325 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 384

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +EM  +G   +  +Y +LIGG  +  R  +  K L +M+++ +   V+ ++       + 
Sbjct: 385 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 444

Query: 587 GRSYVLDELAQKMRFSG 603
           G+    +EL ++M   G
Sbjct: 445 GKLREAEELHKEMIHRG 461



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 21/216 (9%)

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT------------IMIWKFCKQ-------- 431
           GL+ I K  DAI LF  M    P P V  ++             ++   CKQ        
Sbjct: 161 GLVDI-KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAH 219

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N    + +I  F   R++ + +  + ++ + G  P+ +T++ LI  + ++    EA+ + 
Sbjct: 220 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 279

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
             MV  G KP + T N ++     +G       + D+M+  GC P+  +Y  ++  +   
Sbjct: 280 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 339

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            ++  A + L +M E+ +K   + Y+     L + G
Sbjct: 340 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 375


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 163/320 (50%), Gaps = 17/320 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAM 286
           A +FF WA ++ G+ H+  TY +M+ I+GRAR FE    +L+EM  +G    + T+   +
Sbjct: 50  ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLI 109

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           +A+  A    +A+ IF  M +        T   L++   ++     A  ++ K++   F 
Sbjct: 110 HAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQ 169

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+  TY+V++    +   + EA +++ EM+++GF P +V +NI+++   K G    A+KL
Sbjct: 170 PDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKL 229

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           +  M+  G  P+  +Y+IM+             ++   G+ +  +++++   EME+ G  
Sbjct: 230 YNDMQDAGFHPDRVTYSIMM------------EVLGQIGHLQEAELMFN---EMEQAGWV 274

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD   Y  ++ +    +  + A+  Y++M+ SG  P +   N ++ SY +   +++   V
Sbjct: 275 PDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGV 334

Query: 526 WDEMIRRGCCPDDNSYTVLI 545
            + M   G  P   ++T+L+
Sbjct: 335 IETMKAWGLVPTLQTHTILL 354



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 23/300 (7%)

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           IN +L++   S L   A   FD  K +  +  ++ TYT ++G   R +N     R+  EM
Sbjct: 37  INEVLKHQKESGL---ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEM 93

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
             +G +P VV +N ++    +     +A+++F  M+ +G SP+  +Y  ++    K    
Sbjct: 94  RREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSK---- 149

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                  GF      D   D+ ++M++ G  PD  TY+ +I  +       EA+++++EM
Sbjct: 150 ------AGFH-----DNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEM 198

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           V  GF P++ TYN+I+    ++GNY M  K++++M   G  PD  +Y++++  L      
Sbjct: 199 VERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHL 258

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG---KFEVSNVL 611
            EA     EM + G       Y        +A  +    E  QKM  SG     ++SN L
Sbjct: 259 QEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSL 318



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 37/206 (17%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
            + GF  ++ TY+ ++  LG+A +    + + EEM E+G   S+ T+ I ++  A +   
Sbjct: 164 QQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNY 223

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             A+ ++  M    F     T + ++E LG+    +EA+L+F++++   + P+   Y V+
Sbjct: 224 VMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVM 283

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVV------------------------------ 384
           +  W + +N   A   + +M+D G  P+V                               
Sbjct: 284 VDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGL 343

Query: 385 -----AHNIMLEGLLKIGKRSDAIKL 405
                 H I+L       +    + L
Sbjct: 344 VPTLQTHTILLSSCTASAQHHQVVNL 369


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 174/353 (49%), Gaps = 17/353 (4%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G+  ++ T+N++++ L    +    V ++  M E G   ++ T+   +N    + +  
Sbjct: 128 KLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTS 187

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A+ +   M++   KA V T + ++++L R      A  LF +++ +    +L TY  L+
Sbjct: 188 LALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLV 247

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           GG C+     +  ++  +M  +   P+V+  N++++  +K GK  +A +L++ M  KG S
Sbjct: 248 GGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGIS 307

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PN  +Y  ++  +C QN               R+    ++L  M    C PD +T+ +LI
Sbjct: 308 PNTITYNSLMDGYCMQN---------------RLSEANNMLDLMVRNNCSPDIVTFTSLI 352

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           K     K  DE +++++++ + G      TY+++++ + Q+G  E+  +++ EM+  G  
Sbjct: 353 KGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVL 412

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           PD  +Y +L+ GL    +  +A +  E++ +  M   ++ Y      + + G+
Sbjct: 413 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGK 465



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 179/386 (46%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N  TYNS+++ + ++      + +L +M E+ + + + T+   +++         A
Sbjct: 165 GCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAA 224

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++F+ M     K+ + T N L+  L ++ K     QLL D    +  PN+ T+ VL+  
Sbjct: 225 ISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDV 284

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   L EA  ++ EMI KG  P+ + +N +++G     + S+A  + ++M     SP+
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + ++T +I  +CK                     N   Y+ L+ GF    +++I  +L +
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQ 404

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM   G  PD +TY  L+  +      ++A+ I++++ +S     I  Y +I++   + G
Sbjct: 405 EMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGG 464

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    ++  +  +G  P+  +YTV+I GL  +    EA   L +M E G +     YN
Sbjct: 465 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYN 524

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  R G      +L ++M+  G
Sbjct: 525 TLIRAHLRDGDLTASAKLIEEMKSCG 550



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 163/363 (44%), Gaps = 21/363 (5%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
           P     SR ++ + S     +QF  ++   ++M   G+  ++ T  I +N F    +   
Sbjct: 63  PSLVDFSRFFSGVAS----TKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCF 118

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A ++   + K  ++    T N L+  L   SK+ +   L+   +++   PN+ TY  ++ 
Sbjct: 119 AYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVN 178

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+  +   A  +  +M ++  K DV  ++ +++ L + G    AI LF+ M+ KG   
Sbjct: 179 GICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 238

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ +Y  ++   CK                 + +    LLK+M  R   P+ +T+N LI 
Sbjct: 239 SLVTYNSLVGGLCKAG---------------KWNDGVQLLKDMTSRKIIPNVITFNVLID 283

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           +   +    EA  +YKEM+  G  P   TYN +M  Y           + D M+R  C P
Sbjct: 284 VFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSP 343

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  ++T LI G     R  E  K   ++ ++G+ A  + Y+       ++G+  + +EL 
Sbjct: 344 DIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELF 403

Query: 597 QKM 599
           Q+M
Sbjct: 404 QEM 406



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 185/399 (46%), Gaps = 36/399 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TYNS++  L +A ++   V +L++M  + ++ ++ TF + ++ F    + ++A
Sbjct: 235 GIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEA 294

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLGG 357
             +++ M          T N L++         EA  + D  +++  +P++ T+T L+ G
Sbjct: 295 NELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKG 354

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+VK + E  +++ ++  +G   + V ++I+++G  + GK   A +LF+ M + G  P+
Sbjct: 355 YCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPD 414

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y I++   C                      +  +YT +I G     +++  ++L  
Sbjct: 415 VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFC 474

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +  +G  P+ +TY  +I  +  +    EA  + ++M   G +P   TYN +++++ + G
Sbjct: 475 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDG 534

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS------QDRSGEAYKYLEEMLEKGMKA 571
           +     K+ +EM   G   D +S  ++I  L S      + R     K       +G +A
Sbjct: 535 DLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWWFKEPRRSPGVKRF-----RGTQA 589

Query: 572 PVLDYNKFAADL---SRAGRSYVLDELAQKMRFSGKFEV 607
            ++ +N   A L   +         EL + +R  G+ EV
Sbjct: 590 YLMPFNTITASLNFNTIEAHGMSSAELHRDLRQVGRSEV 628



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 15/223 (6%)

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++ EMI     P +V  +    G+    + +  +   + M+  G + N+ +  IMI
Sbjct: 48  DAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMI 107

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
             FC+       C  T F         Y +L ++ + G  PD  T+N LI  + ++    
Sbjct: 108 NCFCR-------CCKTCFA--------YSVLGKVMKLGYEPDTTTFNTLINGLCLESKVS 152

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EAV +   MV +G +P + TYN I+    ++G+  +   +  +M  R    D  +Y+ +I
Sbjct: 153 EAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTII 212

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             L        A    +EM  KG+K+ ++ YN     L +AG+
Sbjct: 213 DSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   N+ TY+ ++    ++ + E    + +EM   G+L  + T+ I ++      + +
Sbjct: 373 KRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLE 432

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           KA+ IFE + K K    +     ++E + +    ++A  LF  L  +   PN+ TYTV++
Sbjct: 433 KALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 492

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+  +L EA  +  +M + G +P+   +N ++   L+ G  + + KL E MK+ G S
Sbjct: 493 SGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 552

Query: 416 PNVRSYTIMI 425
            +  S  ++I
Sbjct: 553 ADASSIKMVI 562


>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
          Length = 637

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 174/412 (42%), Gaps = 56/412 (13%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-N 287
           F+     G KP       TY  +++ L   R FE++ S+L E+   G+     F  A+ N
Sbjct: 90  FKHLMDEGHKPSLV----TYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALIN 145

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFT 345
           AF  AK   +A+  F  M          T N L++  G    P+E+Q +FD +  +    
Sbjct: 146 AFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVR 205

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN------------------ 387
           PNLTTY +L+  WC  +NL EA  V  +M   GF+PD+V +N                  
Sbjct: 206 PNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEEL 265

Query: 388 ----------------IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
                           I++ G  + G+  +A++  + MK  G  PNV             
Sbjct: 266 IVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNV------------- 312

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
              ++  L+ GF +   M  V  +L  ME+ G  PD +TY+  +          + + ++
Sbjct: 313 --VIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVF 370

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M+ +G +P    Y+++ K + +    E    +  +M   G CP+  ++T +I G  S 
Sbjct: 371 DKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSV 430

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                A +  ++M + G+   +  +       S   + +  +E+ Q MR +G
Sbjct: 431 ADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETG 482



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 25/352 (7%)

Query: 217 VLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           ++  F  A+R   A   F W     G    + T+N+++   G   + E    + + MG +
Sbjct: 143 LINAFVEAKRMGEAINTF-WKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVE 201

Query: 275 GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           G +  ++ T+ I + A+   +  ++A  +   M    F+  + T N +      +     
Sbjct: 202 GSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWR 261

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A+ L  +++ R   +  T+ +++GG+CR   L EA R   +M D G  P+VV  N +L+G
Sbjct: 262 AEELIVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNVVIFNTLLKG 321

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------IMIWKFCKQN 432
            L     +   K+  +M+  G  P++ +Y+                     MI    + +
Sbjct: 322 FLDANDMAAVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPD 381

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
             VY+ L  GF   ++ +   DLL +M   G  P+ +T+  +I         + A+R+Y 
Sbjct: 382 PQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYD 441

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +M +SG  P + T+  ++  Y +        +V   M   G  P  ++Y ++
Sbjct: 442 KMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLI 493



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 19/251 (7%)

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K   +A  V+  ++D+G KP +V + I+L  L           L   ++  G  P     
Sbjct: 81  KKPYQAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRP----- 135

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                     ++  +  LI  F   +RM    +   +M+  GC P   T+N LIK   I 
Sbjct: 136 ----------DSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIV 185

Query: 482 KMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
             P+E+ R++  M V    +P + TYN+++K++    N E    V  +M   G  PD  +
Sbjct: 186 GKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVT 245

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y  +     + D +  A + + E+  + ++     +        R GR        Q+M+
Sbjct: 246 YNTIASAYANNDETWRAEELIVEIQTR-VRTSERTWGIIIGGYCREGRLEEALRCVQQMK 304

Query: 601 FSGKFEVSNVL 611
            +G   V NV+
Sbjct: 305 DAG--SVPNVV 313



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 264 MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           ++ ++E+ G K    + T+   +N F++     K + +F+ M +   +      + L + 
Sbjct: 334 ILGLMEKFGIKP--DIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKG 391

Query: 324 LGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             R++ P++A+ L  ++ H    PN+ T+T ++ GWC V ++  A RV+++M   G  P+
Sbjct: 392 FVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPN 451

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--IWK 427
           +     ++ G  +  +   A ++ ++M+  G  P   +Y ++   WK
Sbjct: 452 LRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIADAWK 498


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 24/343 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  + +YNS++  L      +    +  EM E G    E T+ + ++A   +   ++ 
Sbjct: 829  GVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 888

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
            + + E M++  +++   T N ++  L +S+ L +   L ++ +   F+P   TY  LL G
Sbjct: 889  LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 948

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +   + +A  ++NEM++ G K +   +NI+L G    G       LF+ M  +G +P+
Sbjct: 949  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1008

Query: 418  VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYTI+I   CK                     +   Y  LI G G  +R++    L  
Sbjct: 1009 IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 1068

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            EM+++G  P+  TYN+LI  +       EA ++Y+E++  G+KP + TYN +++ Y  +G
Sbjct: 1069 EMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1128

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
            + +     +  MI  GC P  NS T  I  L+     G++  Y
Sbjct: 1129 STDSAYAAYGRMIVGGCLP--NSSTCHIHELMKTFLKGDSDSY 1169



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 159/370 (42%), Gaps = 22/370 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  +Y   + +LG+AR+F+    +L EM  +G    + T  + +     A     A
Sbjct: 304 GVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDA 363

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M K   K    T   LL+    +   +    +++ +K   +  N+  YT ++  
Sbjct: 364 KDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDA 423

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V  + EA  +++EM  KG  P+  ++N ++ G LK  +  DA++LF+ M   GP PN
Sbjct: 424 LCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPN 483

Query: 418 --------------------VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
                               ++ Y +M  K    +      ++ G     R+ +   +  
Sbjct: 484 GYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFH 543

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E++  G  PD +TY  +IK        DEAV+I+ +M+ +   P +   N ++ + ++ G
Sbjct: 544 ELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAG 603

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   +++ ++      P D +Y  L+ GL  + +  E    LEEM        ++ YN
Sbjct: 604 RGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYN 663

Query: 578 KFAADLSRAG 587
                L + G
Sbjct: 664 TILDCLCKNG 673



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 17/351 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   + RTY+ +M   G+ R  ET++ +L EM   G+  ++ ++ I +     A+   +A
Sbjct: 269 GVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEA 328

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I   M     K  V T   L++ L  +    +A+ +F K+K     P+  TY  LL  
Sbjct: 329 YRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDK 388

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +           +WN M   G+  +VVA+  +++ L ++G+  +A+++F+ MK KG  P 
Sbjct: 389 FADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 448

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             SY                 LI+GF    R     +L K M+  G  P+G T+   I  
Sbjct: 449 QYSYN---------------SLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINY 493

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   +A++ Y+ M   G  P +   N ++    ++G   M ++V+ E+   G  PD
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +YT++I       +  EA K   +M+E      VL  N     L +AGR
Sbjct: 554 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGR 604



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 165/379 (43%), Gaps = 22/379 (5%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            TYN++++ LGR  + + ++ +LEEM       ++ T+   ++          A+ +   M
Sbjct: 626  TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 685

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                    + + N ++  L + +   EA  +F ++K    P+  T   +L  + ++  + 
Sbjct: 686  TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMK 745

Query: 366  EAGRVWNE-MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA  +  E  +  G K D  + + ++EG+LK      +I+  E++ + G + +      +
Sbjct: 746  EALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPL 805

Query: 425  IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            I   CKQ  A+                    Y  LI G  +   +DI   L  EM+E GC
Sbjct: 806  IKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGC 865

Query: 465  PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             PD  TYN L+  M      +E +++ +EM R G++ T  TYN I+    ++   E    
Sbjct: 866  GPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAID 925

Query: 525  VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
            ++  ++ +G  P   +Y  L+ GL+   R  +A     EMLE G KA    YN       
Sbjct: 926  LYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHR 985

Query: 585  RAGRSYVLDELAQKMRFSG 603
             AG +  +  L Q M   G
Sbjct: 986  IAGNTEKVCHLFQDMVDQG 1004



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 158/356 (44%), Gaps = 21/356 (5%)

Query: 238  KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
            +PG   +  + +S+M  + +    E  +   E +   G+   + F   +       ++KK
Sbjct: 757  QPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLC--KQKK 814

Query: 298  AVAIFELMNKYK-FKAGVDT--INCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTV 353
            A+   EL+ K+K F   + T   N L+  L    L   A+ LF ++K     P+  TY +
Sbjct: 815  ALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNL 874

Query: 354  LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
            LL    +   + E  +V  EM  KG++   V +N ++ GL+K  +   AI L+  + ++G
Sbjct: 875  LLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQG 934

Query: 414  PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             SP                   Y  L+ G     R++   +L  EM E GC  +   YN 
Sbjct: 935  FSPT---------------PCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNI 979

Query: 474  LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
            L+   +I    ++   ++++MV  G  P I +Y +I+ +  + G    G   + +++  G
Sbjct: 980  LLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMG 1039

Query: 534  CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
              PD  +Y +LI GL    R  EA     EM +KG+   +  YN     L +AG++
Sbjct: 1040 LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKA 1095



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N LL+ +G+S +  E  L   +  HR  +     TY  ++ G  + + L +A  ++  
Sbjct: 871  TYNLLLDAMGKS-MRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYN 929

Query: 374  MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
            ++ +GF P    +  +L+GLLK G+  DA  LF  M   G               CK N 
Sbjct: 930  LMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG---------------CKANC 974

Query: 434  AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             +Y  L+ G       + V  L ++M ++G  PD  +Y  +I  +      ++ +  +++
Sbjct: 975  TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQ 1034

Query: 494  MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
            ++  G +P + TYN+++    ++   E    +++EM ++G  P+  +Y  LI  L    +
Sbjct: 1035 LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGK 1094

Query: 554  SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            + EA K  EE+L KG K  V  YN      S +G +
Sbjct: 1095 AAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGST 1130



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 146/347 (42%), Gaps = 57/347 (16%)

Query: 240 GFAHNSRTYNSMMSILGR-ARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKK 297
           G+  N   Y +++  L +  R FE +  M +EM +KG++  + ++   ++ F  A     
Sbjct: 409 GYNDNVVAYTAVIDALCQVGRVFEAL-EMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 467

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ +F+ M+                                   H   PN  T+ + +  
Sbjct: 468 ALELFKYMDI----------------------------------HGPKPNGYTHVLFINY 493

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +    ++A + +  M  KG  PDVVA N +L GL K G+   A ++F  +KA G SP+
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553

Query: 418 VRSYTIMI------WKF--------------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT+MI       KF              C  +  V   LI       R D  + +  
Sbjct: 554 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFY 613

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +++E    P   TYN L+  +  +    E + + +EM  S + P + TYN I+    + G
Sbjct: 614 QLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNG 673

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                  +   M  +GC PD +SY  +I GL+ ++R  EA+    +M
Sbjct: 674 AVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 720



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 21/289 (7%)

Query: 336 LFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           +FD ++ +    N+ T+  + GG      L  A      M + G   +   +N ++  L+
Sbjct: 191 VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 250

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAA 434
           K G   +A+++++VM   G  P+VR+Y++++  F                     K N  
Sbjct: 251 KSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY 310

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            YT  I   G  RR D  Y +L EME  GC PD +T+  LI+++       +A  ++ +M
Sbjct: 311 SYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 370

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            +S  KP   TY  ++  +   G  +   ++W+ M   G   +  +YT +I  L    R 
Sbjct: 371 KKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRV 430

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            EA +  +EM +KG+      YN   +   +A R     EL + M   G
Sbjct: 431 FEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHG 479



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 172/412 (41%), Gaps = 54/412 (13%)

Query: 216 DVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSIL---GR----ARQFETM-- 264
           DV+   R A  PA     F  A  +P   H + + N M+ ++   GR    A  F+ M  
Sbjct: 138 DVIHALRSADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQR 197

Query: 265 ----------VSMLEEMGEKG--------LLSMETFKIAMNAF---------AAAKERKK 297
                      ++   +G +G        L  M+   I +NA+           +   ++
Sbjct: 198 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 257

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           A+ ++++M        V T + L+   G+ +  +    L  +++ H   PN+ +YT+ + 
Sbjct: 258 ALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIR 317

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
              + +   EA R+  EM ++G KPDV+ H ++++ L   G+ SDA  +F  MK     P
Sbjct: 318 VLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKP 377

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +  +Y  ++ KF     +                 V ++   M+  G   + + Y A+I 
Sbjct: 378 DRVTYITLLDKFADNGES---------------QSVMEIWNAMKADGYNDNVVAYTAVID 422

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +       EA+ ++ EM + G  P  ++YN ++  + +   +    +++  M   G  P
Sbjct: 423 ALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKP 482

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +  ++ + I        S +A +  E M  KG+   V+  N     L+++GR
Sbjct: 483 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGR 534



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 15/216 (6%)

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N ML+ +   G+  D  ++F+VM+                +  K N   +  +  G G  
Sbjct: 173 NYMLDLMRDHGRVGDMAEVFDVMQR---------------QIVKANVGTFAAIFGGLGVE 217

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
             +      L  M+E G   +  TYN L+  +       EA+ +YK M+  G  P++ TY
Sbjct: 218 GGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTY 277

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           +++M ++ +  + E    +  EM   G  P+  SYT+ I  L    R  EAY+ L EM  
Sbjct: 278 SVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMEN 337

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602
           +G K  V+ +      L  AGR     ++  KM+ S
Sbjct: 338 EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 373


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 168/373 (45%), Gaps = 23/373 (6%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME----TFKIAMN 287
           FC   +  G  H+  T   M++   R ++     S+L   G    L  E    TF   +N
Sbjct: 92  FCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVL---GRAWKLGYEPDTITFSTLVN 148

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTP 346
            F       +AVA+ + M + K +  + T++ L+  L       EA +L D++ ++ F P
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 208

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +  TY  +L   C+  N   A  ++ +M ++  K  VV ++I+++ L K G   DA+ LF
Sbjct: 209 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 268

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             M+ KG                K +   Y+ LI G  N  + D    +L+EM  R   P
Sbjct: 269 NEMEMKG---------------IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP 313

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +T++ALI +   +    EA  +Y EM+  G  P   TYN ++  + +        +++
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D M+ +GC PD  +Y++LI       R  +  +   E+  KG+    + YN       ++
Sbjct: 374 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 433

Query: 587 GRSYVLDELAQKM 599
           G+     EL Q+M
Sbjct: 434 GKLNAAKELFQEM 446



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 24/387 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TY  +++ L ++      + +  +M E+ +  S+  + I +++         A
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +++F  M     KA V T + L+  L    K    A++L + +     P++ T++ L+  
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   L+EA  ++NEMI +G  PD + +N +++G  K     +A ++F++M +KG  P+
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+I+I  +CK                     N   Y  L+ GF    +++   +L +
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  RG PP  +TY  L+  +      ++A+ I+++M +S     I  YN+I+       
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +    ++  +  +G  PD  +Y V+IGGL  +    EA     +M E G       YN
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 564

Query: 578 KFA-ADLSRAGRSYVLDELAQKMRFSG 603
               A L  +G    + EL ++M+  G
Sbjct: 565 ILIRAHLGGSGLISSV-ELIEEMKVCG 590



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 162/334 (48%), Gaps = 18/334 (5%)

Query: 257 RARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           + R  E +V +++ M E G    E T+   +N    +     A+ +F  M +   KA V 
Sbjct: 188 KGRVSEALV-LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVV 246

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
             + ++++L +     +A  LF++++ +    ++ TY+ L+GG C      +  ++  EM
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
           I +   PDVV  + +++  +K GK  +A +L+  M  +G +P+  +Y  +I  FCK+N  
Sbjct: 307 IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN-- 364

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              CL          + ++DL   M  +GC PD +TY+ LI      K  D+ +R+++E+
Sbjct: 365 ---CL-------HEANQMFDL---MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G  P   TYN ++  + Q+G     ++++ EM+ RG  P   +Y +L+ GL      
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A +  E+M +  M   +  YN     +  A +
Sbjct: 472 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 140/301 (46%), Gaps = 17/301 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+++++ +  +  +      +  EM  +G+     T+   ++ F       +A  +F+LM
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +  + T + L+ +  ++K   +   LF ++  +   PN  TY  L+ G+C+   L
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A  ++ EM+ +G  P VV + I+L+GL   G+ + A+++FE M+    +  +  Y I+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   C               N  ++D  + L   + ++G  PD +TYN +I  +  +   
Sbjct: 497 IHGMC---------------NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSL 541

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA  ++++M   G  P   TYN++++++          ++ +EM   G   D ++  ++
Sbjct: 542 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 601

Query: 545 I 545
           I
Sbjct: 602 I 602



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 209 LSHNLVVDVL--ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           +++N ++D    E   H     F      G +P       TY+ +++   +A++ +  + 
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV----TYSILINSYCKAKRVDDGMR 406

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  E+  KGL+ +  T+   +  F  + +   A  +F+ M        V T   LL+ L 
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +    +A  +F+K+ K R T  +  Y +++ G C    + +A  ++  + DKG KPDVV
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVV 526

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            +N+M+ GL K G  S+A  LF  MK  G +P+  +Y I+I
Sbjct: 527 TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 16/208 (7%)

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           G++ I K +DAI LFE M    P P    +     + C           +     ++ D+
Sbjct: 45  GIVDI-KVNDAIDLFESMIQSRPLPTPIDFN----RLC-----------SAVARTKQYDL 88

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V    K ME  G   D  T   +I     +K    A  +     + G++P   T++ ++ 
Sbjct: 89  VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 148

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            +   G       + D M+     PD  + + LI GL  + R  EA   ++ M+E G + 
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 208

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKM 599
             + Y      L ++G S +  +L +KM
Sbjct: 209 DEVTYGPVLNRLCKSGNSALALDLFRKM 236


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 69/414 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 303 ELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
             M +       V   + ++++L +     +AQ LF +++ +   P+L TY  ++ G+C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A ++  EM+++   PDVV +N ++   +K GK  +A +L++ M  +G  PN  +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 421 YTIMIWKFCKQN---AA-----------------VYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+ MI  FCKQN   AA                  +  LI G+   +R+D   +LL EM 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 461 ERGCPPDGLTYNALI-----------KLMKIQKM------PD------------------ 485
           E G   D  TYN LI            L  +Q+M      PD                  
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 486 EAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +A+ ++K M +S           G +P + TYN+++      G +    ++++EM  RG 
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 542

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y+ +I GL  Q R  EA +  + M  K     V+ +        +AGR
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 596



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 23/379 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKIT 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K      V T   LL  L       EA   F ++ +    PN+ T+T L+ G CR   ++
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIM 424
           EA  + + M++ G +P  + +  +++G+ K G    A+ L   M+      PNV  Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   Y  +I GF +  R      LL+EM ER  
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYNALI     +    EA  +Y EM+  G  P   TY+ ++  + +    +    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M  +GC P+  ++  LI G     R  +  + L EM E G+ A    YN       
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G      +L Q+M  SG
Sbjct: 442 LVGDLNAALDLLQEMISSG 460



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F LM
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N L++   G  ++    +LL +  +     + TTY  L+ G+  V +L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----------G 413
             A  +  EMI  G  PD+V  + +L+GL   GK  DA+++F+VM+             G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V++Y I               LI+G  N  +     +L +EM  RG  PD +TY++
Sbjct: 507 VEPDVQTYNI---------------LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M    F P + T+  ++  Y + G  + G +++ EM RRG
Sbjct: 552 MIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +Y  LI G         A    +EM+  G+
Sbjct: 612 IVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 29/284 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + N  T+N+++     A++ +  + +L EM E GL++   T+   ++ F    +   A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T + LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M +K  SPNV ++T +I  +CK                 R+D   +L  EM  RG   
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAG---------------RVDDGLELFCEMGRRGIVA 614

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMI 509
           + +TY  LI   +     + A+ I++EM+ SG  P TI   NM+
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 164/395 (41%), Gaps = 33/395 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y++++  L +  +     ++  EM EKG+   + T+   +  F ++     A  + 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M + K    V T N L+    +     EA+ L+D++  R   PN  TY+ ++ G+C+ 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  ++  M  KG  P+++  N +++G     +  D ++L   M   G   +  +Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 422 TIMIWKF---CKQNAA---------------VYTC--LITGFGNRRRMDIVYDLLKEMEE 461
             +I  F      NAA               + TC  L+ G  +  ++    ++ K M++
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 462 -----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
                       G  PD  TYN LI  +  +    EA  +Y+EM   G  P   TY+ ++
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               +    +   +++D M  +   P+  ++T LI G     R  +  +   EM  +G+ 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           A  + Y        + G      ++ Q+M  SG +
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 21/292 (7%)

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L     L  D L+ R  P++  +  L+G   R++       ++ +M  K  + D+ + NI
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------------------- 428
           +++      K   A+  F  +   G  P+V ++T ++                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C+ N   +T L+ G     R+     LL  M E G  P  +TY  ++  M  +     A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 489 RIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
            + ++M   S   P +  Y+ I+ S  + G +   + ++ EM  +G  PD  +Y  +I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             S  R  +A + L+EMLE+ +   V+ YN       + G+ +  +EL  +M
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 51/238 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN+++            + +L+EM   GL   + T    ++      + K A
Sbjct: 425 GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484

Query: 299 VAIFELMNKYK-----------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---- 343
           + +F++M K K            +  V T N L+  L       EA+ L++++ HR    
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544

Query: 344 --------------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
                                           F+PN+ T+T L+ G+C+   + +   ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 604

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
            EM  +G   + + +  ++ G  K+G  + A+ +F+ M + G  P+   +R+    +W
Sbjct: 605 CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   + +TYN ++S L    +F     + EEM  +G++    T+   ++         +A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F+ M    F   V T   L+    ++    +   LF ++  R    N  TY  L+ G
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           + +V N+  A  ++ EMI  G  PD +    ML GL    +   A+ + E ++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 171/366 (46%), Gaps = 17/366 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N+  YNS++    R R  + +  +L+EM  +G+  ++ T+ I ++  + A +  K 
Sbjct: 178 GVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKV 237

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
            A+++ M +      V   + ++    R    + A  +FD+ + H   PN  TY  L+ G
Sbjct: 238 EAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALING 297

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  +  A  +  +M  +G   + +  N M++G  + G    A+++  VM+  G   +
Sbjct: 298 FCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELD 357

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y  +    C+ N               RM+    LL  M E+G  P+ ++Y  LI +
Sbjct: 358 IYTYNTLACGLCRVN---------------RMEDAKKLLHIMAEKGVAPNYVSYTTLISI 402

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +    EA R++++M   G +P++ TYN+++  Y + G+     +   EM ++G  PD
Sbjct: 403 HAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPD 462

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y  L+ G     +   A +  EEM  +G K  V+ Y    + L++ GRS    +L  
Sbjct: 463 IYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYD 522

Query: 598 KMRFSG 603
            M  +G
Sbjct: 523 DMLAAG 528



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 136/306 (44%), Gaps = 30/306 (9%)

Query: 198 MEAVLDE------CGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           +EAV DE       G    ++ V++   R  + RR +  F    G   G   N RTY ++
Sbjct: 237 VEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGH--GVEPNERTYGAL 294

Query: 252 MSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++   +  Q E    +L +M  +G+   +  F   ++ +      +KA+ I  +M K   
Sbjct: 295 INGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGI 354

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  + T N L   L R    ++A+ L   +  +   PN  +YT L+    +  +++EA R
Sbjct: 355 ELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARR 414

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           ++ +M  KG +P VV +N+M++G +K G   +A +  + M+ KG  P++ +Y  ++   C
Sbjct: 415 LFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHC 474

Query: 430 --------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                               K N   YT L++G     R +  + L  +M   G  PD  
Sbjct: 475 VNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDT 534

Query: 470 TYNALI 475
            Y+ L+
Sbjct: 535 LYSVLV 540



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 124/283 (43%), Gaps = 21/283 (7%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           + + +++   +S    +A  L D+L +H    N   Y  LL  + R +N      +  EM
Sbjct: 150 SASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEM 209

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---- 430
            ++G +P V  + I+++GL + G  S    +++ MK K  + +V  Y+ +I  +C+    
Sbjct: 210 ENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNV 269

Query: 431 ----------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            N   Y  LI GF    +++    LL +M+ RG   + + +N +
Sbjct: 270 RRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTM 329

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I       M ++A+ I   M + G +  I+TYN +     +    E  +K+   M  +G 
Sbjct: 330 IDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGV 389

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            P+  SYT LI     +    EA +   +M  KG +  V+ YN
Sbjct: 390 APNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYN 432



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 68/167 (40%)

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           + ++ GF     +D  + LL E+   G   +   YN+L+     Q+  D    + KEM  
Sbjct: 152 SVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMEN 211

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G +PT+ TY +++    + G+      V+DEM R+    D   Y+ +I           
Sbjct: 212 RGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRR 271

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           A +  +E +  G++     Y        + G+    + L   M+  G
Sbjct: 272 ASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRG 318


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 186/420 (44%), Gaps = 44/420 (10%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLL------- 277
           F FF +   +P F H    Y++M   L      ++     + ++ +MG            
Sbjct: 83  FSFFNYLASRPPFRHTLHNYSTMAHFLSSHNLLSQTHSLFLFIISKMGHHSSTSLISSLI 142

Query: 278 -----------SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
                      S+  F   + A+  ++  + A+    L+ K  F   V   + LL  + +
Sbjct: 143 QTVPTHHRHNHSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMK 202

Query: 327 -SKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++ P    +   + L + + PN+  + +L+ G+C++ ++M A  V++E+  +G +P VV
Sbjct: 203 LNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVV 262

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
           + N ++ G  +     +   L  VM+++  SP+V +Y+ +I   CK+             
Sbjct: 263 SFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N   +T LI G     ++D+     + M++RG  PD +TYNALI  +      
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL 382

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA ++  EM+ +GFKP   T+  +M    + G+ +   ++ D M+  G   DD ++T L
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
           I GL    R  +A + L++ML  G K     Y        + G   +  +L ++M+  G+
Sbjct: 443 ISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGR 502



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 142/305 (46%), Gaps = 21/305 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
           F I M+ F    +   A  +F+ +++   +  V + N L+    RSK  +E  +L   ++
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 342 -HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
             R +P++ TY+ L+ G C+   + EA  +++EM + G  P+ V    +++G  K GK  
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKID 348

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLI 440
            A++ FE+MK +G  P++ +Y  +I   C                    K +   +T L+
Sbjct: 349 LALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G      MD   ++   M E G   D + + ALI  +       +A R+ K+M+ +G K
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TY M++  + + G+ +MG K+  EM R G  P   +Y  L+ G   Q +   A   
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKML 528

Query: 561 LEEML 565
           L  ML
Sbjct: 529 LHAML 533



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 156/364 (42%), Gaps = 28/364 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  N   +N +M    +         + +E+  +GL  S+ +F   ++ +  +K  ++ 
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEG 280

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +  +M   +    V T + L+  L +    +EA  LFD++ +    PN  T+T L+ G
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A R +  M D+G +PD++ +N ++ GL + G   +A KL   M   G  P+
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++T ++   CK                     +   +T LI+G     R+     +LK
Sbjct: 401 KITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLK 460

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G  PD  TY  +I     +       ++ KEM R G  P + TYN +M  + + G
Sbjct: 461 DMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQG 520

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +  + +   M+     P+D ++ +L+ G      S      ++  +  G K  V DY 
Sbjct: 521 QMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSS------VDFKIFNGEKGLVSDYA 574

Query: 578 KFAA 581
            + A
Sbjct: 575 SYTA 578



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 122/294 (41%), Gaps = 37/294 (12%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++ L R    +    +L EM   G    + TF   M+      +   A+ I + M
Sbjct: 368 TYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRM 427

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            +   +        L+  L R    ++A+ +L D L     P+  TYT+++  +C+  ++
Sbjct: 428 VEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDV 487

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
               ++  EM   G  P VV +N ++ G  K G+  +A  L   M      PN  ++ I+
Sbjct: 488 KMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNIL 547

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           +   CK  ++V   +  G                  E+G   D  +Y AL+         
Sbjct: 548 LDGHCKHGSSVDFKIFNG------------------EKGLVSDYASYTALV--------- 580

Query: 485 DEAVRIYKEMVRSGFKPTIHT-----YNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +E+++I K+ ++S  +   H       N  M S  Q+  +    +++ E +R G
Sbjct: 581 NESIKISKDQLKSVLECPTHIGIQYRQNTDMCSCIQSLQFS---QIFTEFLRVG 631


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 169/369 (45%), Gaps = 20/369 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G      TY +++  LGR      + S+L EM  +GL  +++ +   +NA    +   +A
Sbjct: 146 GIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQA 205

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
             +   M K +F   V T N ++    R    +EA +LL + ++    PN  +YT L+ G
Sbjct: 206 SDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHG 265

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C     M A  +  EM+ +G  PD++    ++ GL+  G+ +DA+ + E M  +   P+
Sbjct: 266 FCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPD 325

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                          A +Y  LI+G   +R +    +LL+EM E+   PD   Y  LI  
Sbjct: 326 ---------------ANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDG 370

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            ++  K+ D A +I+ E +     P I  YN+++K Y + G  +        M + GC P
Sbjct: 371 FVRSDKLSD-ARKIF-EFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIP 428

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D+ +YT L+ G   +     + + L +M+++  K  +  Y          G +Y  ++L 
Sbjct: 429 DEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLF 488

Query: 597 QKMRFSGKF 605
            KM+  G F
Sbjct: 489 AKMQSEGLF 497



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 160/409 (39%), Gaps = 54/409 (13%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVS---MLEEMGEKGL 276
           FC  GD            + G   N  +Y  +  I G   + E MV+   ++E MG    
Sbjct: 231 FCREGDVREALKLLREAIRRGLEPNQLSYTPL--IHGFCVRGEAMVASDLLVEMMGRGHT 288

Query: 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-L 335
             M T    ++    + +   A+ + E M + +     +  N L+  L + ++   A+ L
Sbjct: 289 PDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNL 348

Query: 336 LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
           L + L+ +  P+   YT L+ G+ R   L +A +++  M +K   PD+VA+N+M++G  K
Sbjct: 349 LEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCK 407

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF--------------------CKQNAAV 435
            G   +A+     M+  G  P+  +YT ++  +                    CK N   
Sbjct: 408 FGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFT 467

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           Y  LI G+ N        DL  +M+  G  P+ + Y  LI  +  +    +A   ++ M+
Sbjct: 468 YASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHML 527

Query: 496 RSGFKPTIHTYNMIMKSYF---------------QTGNYEMGRKVWDEMIRRGCCPDDNS 540
            +   P   T + ++                   Q         V+  +I  G  P  ++
Sbjct: 528 LNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISA 587

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           Y  +I  L   +  G+A    ++M  KG     + +       S AG S
Sbjct: 588 YNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGES 636



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 27/242 (11%)

Query: 353 VLLGGWCRVKNLMEAGRV-----WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407
           V++ G C ++  +E GR      W E    G  P  V +N++++G  + G     + L  
Sbjct: 86  VMVRGLC-LEGRVEEGRGLIEARWGE----GCVPGAVFYNVLIDGYCRRGDIGRGLLLLG 140

Query: 408 VMKAKGPSPNVRSYTIMI-WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            M+ KG  P V +Y  +I W                 G +  +  V  LL EM  RG  P
Sbjct: 141 EMETKGIIPTVVTYGAIIHW----------------LGRKGDLTKVESLLGEMRARGLSP 184

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           +   YN +I  +   +   +A  +  +MV+S F P + T+N ++  + + G+     K+ 
Sbjct: 185 NVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLL 244

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
            E IRRG  P+  SYT LI G   +  +  A   L EM+ +G    ++        L  +
Sbjct: 245 REAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVS 304

Query: 587 GR 588
           G+
Sbjct: 305 GQ 306



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 139/353 (39%), Gaps = 36/353 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  T  +++  L  + Q    + + E+M E+ ++     + + ++     +    A
Sbjct: 286 GHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAA 345

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             + E M + K +        L++   RS    +A+ +F+ ++ +  P++  Y V++ G+
Sbjct: 346 KNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGY 405

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+   + EA    + M   G  PD   +  +++G  K G  S +++L   M  +   PN+
Sbjct: 406 CKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNI 465

Query: 419 RSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y  +I  +C                      N   YT LI     + ++       + 
Sbjct: 466 FTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEH 525

Query: 459 MEERGCPPDGLTYNALIKLM---------------KIQKMPDEAVRIYKEMVRSGFKPTI 503
           M    CPP+  T + L+  +               K        + +++ ++  G  P I
Sbjct: 526 MLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRI 585

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
             YN I+ S  +         + D+M  +GC PD  ++  L+ G  S   SG+
Sbjct: 586 SAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGK 638



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 1/152 (0%)

Query: 437 TC-LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           TC ++ G     R++    L++     GC P  + YN LI     +      + +  EM 
Sbjct: 84  TCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEME 143

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  PT+ TY  I+    + G+      +  EM  RG  P+   Y  +I  L     + 
Sbjct: 144 TKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSAS 203

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           +A   L +M++      V+ +N   A   R G
Sbjct: 204 QASDMLNQMVKSRFNPDVVTFNTMIAGFCREG 235



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 2/142 (1%)

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           G  PD    N L++L+  ++  + A  +Y EM VR G      T  M+ +     G  E 
Sbjct: 41  GALPDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMV-RGLCLEGRVEE 99

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
           GR + +     GC P    Y VLI G   +   G     L EM  KG+   V+ Y     
Sbjct: 100 GRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIH 159

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
            L R G    ++ L  +MR  G
Sbjct: 160 WLGRKGDLTKVESLLGEMRARG 181


>gi|356547448|ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 173/398 (43%), Gaps = 58/398 (14%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPG-FAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           V   L  F +  + A  FF W  +    F H++ T+N M+ ILG+  +F+    ++  M 
Sbjct: 37  VRQTLLSFNNDWKRALEFFNWVEESHSQFHHSTDTFNLMLDILGKFFEFKLCWDLIRRMN 96

Query: 273 --EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
                  +  TF++    + +A     A+  F  + ++  K      N LL+ L   K  
Sbjct: 97  AHPSSPPNHATFRLMFKRYVSAHSVNDAIDTFNRLGEFNLKDHTSFSN-LLDALCEYKHV 155

Query: 331 KEAQ-LLF---DKLKHRFTP--NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            EAQ LLF   +++     P  N   + ++L GW ++    +    W EM  KG   D+ 
Sbjct: 156 LEAQDLLFGNDNRVTLSVDPIGNTKIHNMVLRGWFKLGWWSKCNEFWEEMDKKGVHKDLH 215

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           +++I ++ L K GK   A+KLF+ +K KG                K +  VY  +I   G
Sbjct: 216 SYSIYMDILCKGGKPWKAVKLFKEIKKKG---------------FKLDVVVYNIVIRAIG 260

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM-------------------------- 478
               +D    + +EM+E G  P  +TYN LI+L+                          
Sbjct: 261 LSHGVDFSIRVFREMKELGIKPTVVTYNTLIRLLCDCYRHKEALALLRTIMPSDGCHPTA 320

Query: 479 -------KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
                     + P + + ++ EMV SG +PT+ TY M++  + + G       VW++M +
Sbjct: 321 VSYHCFFASMEKPKQILAMFDEMVESGVRPTMDTYVMLLNKFGRWGFLRPVFMVWNKMKQ 380

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            GC PD  +Y  LI  L+ +     A KY EEML KG+
Sbjct: 381 LGCSPDAAAYNALIDALVDKALIDMARKYDEEMLAKGL 418



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 108/283 (38%), Gaps = 53/283 (18%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG--- 236
           E + V +  D LF  D  +   +D  G    HN+V+          R  F+   W+    
Sbjct: 151 EYKHVLEAQDLLFGNDNRVTLSVDPIGNTKIHNMVL----------RGWFKLGWWSKCNE 200

Query: 237 -----DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFA 290
                DK G   +  +Y+  M IL +  +    V + +E+ +KG  L +  + I + A  
Sbjct: 201 FWEEMDKKGVHKDLHSYSIYMDILCKGGKPWKAVKLFKEIKKKGFKLDVVVYNIVIRAIG 260

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENL-------------------------- 324
            +     ++ +F  M +   K  V T N L+  L                          
Sbjct: 261 LSHGVDFSIRVFREMKELGIKPTVVTYNTLIRLLCDCYRHKEALALLRTIMPSDGCHPTA 320

Query: 325 -------GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
                     + PK+   +FD++ +    P + TY +LL  + R   L     VWN+M  
Sbjct: 321 VSYHCFFASMEKPKQILAMFDEMVESGVRPTMDTYVMLLNKFGRWGFLRPVFMVWNKMKQ 380

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            G  PD  A+N +++ L+       A K  E M AKG SP  R
Sbjct: 381 LGCSPDAAAYNALIDALVDKALIDMARKYDEEMLAKGLSPKPR 423



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 42/72 (58%)

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           +NM+++ +F+ G +    + W+EM ++G   D +SY++ +  L    +  +A K  +E+ 
Sbjct: 182 HNMVLRGWFKLGWWSKCNEFWEEMDKKGVHKDLHSYSIYMDILCKGGKPWKAVKLFKEIK 241

Query: 566 EKGMKAPVLDYN 577
           +KG K  V+ YN
Sbjct: 242 KKGFKLDVVVYN 253


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 69/414 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 303 ELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
             M +       V   + ++++L +     +AQ LF +++ +   P+L TY  ++ G+C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A ++  EM+++   PDVV +N ++   +K GK  +A +L++ M  +G  PN  +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 421 YTIMIWKFCKQN---AA-----------------VYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+ MI  FCKQN   AA                  +  LI G+   +R+D   +LL EM 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 461 ERGCPPDGLTYNALI-----------KLMKIQKM------PD------------------ 485
           E G   D  TYN LI            L  +Q+M      PD                  
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 486 EAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +A+ ++K M +S           G +P + TYN+++      G +    ++++EM  RG 
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 542

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y+ +I GL  Q R  EA +  + M  K     V+ +        +AGR
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 596



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 165/379 (43%), Gaps = 23/379 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKIT 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K      V T N LL  L       EA  LF ++ +    PN+ T+T L+ G CR   ++
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIM 424
           EA  + + M++ G +P  + +  +++G+ K G    A+ L   M+      PNV  Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   Y  +I GF +  R      LL+EM ER  
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYNALI     +    EA  +Y EM+  G  P   TY+ ++  + +    +    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M  +GC P+  ++  LI G     R  +  + L EM E G+ A    YN       
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G      +L Q+M  SG
Sbjct: 442 LVGDLNAALDLLQEMISSG 460



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F LM
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N L++   G  ++    +LL +  +     + TTY  L+ G+  V +L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----------G 413
             A  +  EMI  G  PD+V  + +L+GL   GK  DA+++F+VM+             G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V++Y I               LI+G  N  +     +L +EM  RG  PD +TY++
Sbjct: 507 VEPDVQTYNI---------------LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M    F P + T+  ++  Y + G  + G +++ EM RRG
Sbjct: 552 MIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +Y  LI G         A    +EM+  G+
Sbjct: 612 IVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 29/284 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + N  T+N+++     A++ +  + +L EM E GL++   T+   ++ F    +   A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T + LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M +K  SPNV ++T +I  +CK                 R+D   +L  EM  RG   
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAG---------------RVDDGLELFCEMGRRGIVA 614

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMI 509
           + +TY  LI   +     + A+ I++EM+ SG  P TI   NM+
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 164/395 (41%), Gaps = 33/395 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y++++  L +  +     ++  EM EKG+   + T+   +  F ++     A  + 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M + K    V T N L+    +     EA+ L+D++  R   PN  TY+ ++ G+C+ 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  ++  M  KG  P+++  N +++G     +  D ++L   M   G   +  +Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 422 TIMIWKF---CKQNAA---------------VYTC--LITGFGNRRRMDIVYDLLKEMEE 461
             +I  F      NAA               + TC  L+ G  +  ++    ++ K M++
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 462 -----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
                       G  PD  TYN LI  +  +    EA  +Y+EM   G  P   TY+ ++
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               +    +   +++D M  +   P+  ++T LI G     R  +  +   EM  +G+ 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           A  + Y        + G      ++ Q+M  SG +
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 122/302 (40%), Gaps = 56/302 (18%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G+  +K L +A  ++++M+     P VV    ++  ++++ +    I L++ M+ K 
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
              ++ S+TI+I  FC                      +   +  L+ G     R+    
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT----------- 502
           +L  +M E  C P+ +T+  L+  +  +    EAV +   M+  G +PT           
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 503 -------------------------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                                    +  Y+ I+ S  + G +   + ++ EM  +G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y  +I G  S  R  +A + L+EMLE+ +   V+ YN       + G+ +  +EL  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 598 KM 599
           +M
Sbjct: 350 EM 351



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 51/238 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN+++            + +L+EM   GL   + T    ++      + K A
Sbjct: 425 GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484

Query: 299 VAIFELMNKYK-----------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---- 343
           + +F++M K K            +  V T N L+  L       EA+ L++++ HR    
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544

Query: 344 --------------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
                                           F+PN+ T+T L+ G+C+   + +   ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 604

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
            EM  +G   + + +  ++ G  K+G  + A+ +F+ M + G  P+   +R+    +W
Sbjct: 605 CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   + +TYN ++S L    +F     + EEM  +G++    T+   ++         +A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F+ M    F   V T   L+    ++    +   LF ++  R    N  TY  L+ G
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           + +V N+  A  ++ EMI  G  PD +    ML GL    +   A+ + E ++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 131/265 (49%), Gaps = 21/265 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           +TP++   T L+ G+   KN+ +A RV  E+++   +PDV A+N ++ G  K+ +   A 
Sbjct: 99  YTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNRIEAAT 157

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
           ++   MKA+G  P++ +Y IMI   C +                        YT LI   
Sbjct: 158 QVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEAT 217

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
                ++    LL+EM  RG  PD  TYNA+I+ M  + M + A  +   +   G KP +
Sbjct: 218 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDV 277

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            +YN++++++   G ++ G K+  EM  RGC P+  +Y++LI  L    R  EA   L+ 
Sbjct: 278 ISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 337

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M+EK +      Y+   + L + GR
Sbjct: 338 MIEKELTPDTYSYDPLISALCKEGR 362



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 159/363 (43%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           YN+++S   +  + E    +L  M  +G L  + T+ I + +    ++   A+ + + + 
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLL 199

Query: 307 KYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                  V T   L+E  +    + +  +LL + L     P++ TY  ++ G C+   + 
Sbjct: 200 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 259

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  +   +  KG KPDV+++NI+L   L  GK  +  KL   M ++G  PN  +Y+I+I
Sbjct: 260 RAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 319

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C+                     +   Y  LI+      R+D+   ++  M   GC 
Sbjct: 320 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCL 379

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + YN ++  +      ++A+ I+ ++   G  P + +YN ++ + +  G+      +
Sbjct: 380 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 439

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
              MI +G  PD+ +Y  LI  L       EA   L++M + G +  V+ YN     L +
Sbjct: 440 VPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 499

Query: 586 AGR 588
             R
Sbjct: 500 VRR 502



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 180/387 (46%), Gaps = 47/387 (12%)

Query: 174 STADPREIERVCKVIDELFSLDRNM----------EAVLDECGINLSHNLVVDVLERFRH 223
           S  + R++    KV+D+L  LD  M          EA + E GIN +  L+ ++L R   
Sbjct: 181 SLCNRRKLGLALKVLDQLL-LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR--- 236

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETF 282
                           G   +  TYN+++  + +    E    ++  +  KG    + ++
Sbjct: 237 ----------------GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISY 280

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLK 341
            I + AF    +  +   +   M     +    T + L+ +L R  ++ +   +L   ++
Sbjct: 281 NILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 340

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
              TP+  +Y  L+   C+   L  A  + + MI  G  PD+V +N +L  L K G  + 
Sbjct: 341 KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 400

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A+++F  ++  G  PNV SY  MI       +A+++C     G+R R      ++  M  
Sbjct: 401 ALEIFNKLRGMGCPPNVSSYNTMI-------SALWSC-----GDRSR---ALGMVPAMIS 445

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           +G  PD +TYN+LI  +    + +EA+ +  +M +SGF+PT+ +YN+++    +    + 
Sbjct: 446 KGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDD 505

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGL 548
              ++ EMI +GC P++ +Y +LI G+
Sbjct: 506 AIGMFAEMIEKGCRPNETTYILLIEGI 532



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 166/362 (45%), Gaps = 29/362 (8%)

Query: 251 MMSILGR---ARQFETMVSMLEEMGEKG-----LLSMETFKIAMNAFAAAKERKKAVAIF 302
           +M +L R   A +F   +  LE +  KG     +L  +  K     F   K  +KA  + 
Sbjct: 71  LMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIK----GFFNFKNIEKASRVM 126

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E++  +  +  V   N ++    +    + A  + +++K R F P++ TY +++G  C  
Sbjct: 127 EILESHT-EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 185

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + L  A +V ++++     P V+ + I++E  +  G  ++A+KL E M A+G  P++ +Y
Sbjct: 186 RKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY 245

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             +I   CK+          G   R       +L+  +  +GC PD ++YN L++    Q
Sbjct: 246 NAIIRGMCKE----------GMVER-----AAELITSLTSKGCKPDVISYNILLRAFLNQ 290

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              DE  ++  EM   G +P   TY++++ S  + G  +    V   MI +   PD  SY
Sbjct: 291 GKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSY 350

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
             LI  L  + R   A   ++ M+  G    +++YN   A L + G +    E+  K+R 
Sbjct: 351 DPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRG 410

Query: 602 SG 603
            G
Sbjct: 411 MG 412


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 69/414 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 303 ELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
             M +       V   + ++++L +     +AQ LF +++ +   P+L TY  ++ G+C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A ++  EM+++   PDVV +N ++   +K GK  +A +L++ M  +G  PN  +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 421 YTIMIWKFCKQN---AA-----------------VYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+ MI  FCKQN   AA                  +  LI G+   +R+D   +LL EM 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 461 ERGCPPDGLTYNALI-----------KLMKIQKM------PD------------------ 485
           E G   D  TYN LI            L  +Q+M      PD                  
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 486 EAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +A+ ++K M +S           G +P + TYN+++      G +    ++++EM  RG 
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 542

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y+ +I GL  Q R  EA +  + M  K     V+ +        +AGR
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 596



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 164/379 (43%), Gaps = 23/379 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKIT 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K      V T   LL  L       EA  LF ++ +    PN+ T+T L+ G CR   ++
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIM 424
           EA  + + M++ G +P  + +  +++G+ K G    A+ L   M+      PNV  Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   Y  +I GF +  R      LL+EM ER  
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYNALI     +    EA  +Y EM+  G  P   TY+ ++  + +    +    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M  +GC P+  ++  LI G     R  +  + L EM E G+ A    YN       
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G      +L Q+M  SG
Sbjct: 442 LVGDLNAALDLLQEMISSG 460



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F LM
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N L++   G  ++    +LL +  +     + TTY  L+ G+  V +L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----------G 413
             A  +  EMI  G  PD+V  + +L+GL   GK  DA+++F+VM+             G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V++Y I               LI+G  N  +     +L +EM  RG  PD +TY++
Sbjct: 507 VEPDVQTYNI---------------LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M    F P + T+  ++  Y + G  + G +++ EM RRG
Sbjct: 552 MIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +Y  LI G         A    +EM+  G+
Sbjct: 612 IVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 29/284 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + N  T+N+++     A++ +  + +L EM E GL++   T+   ++ F    +   A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T + LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M +K  SPNV ++T +I  +CK                 R+D   +L  EM  RG   
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAG---------------RVDDGLELFCEMGRRGIVA 614

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMI 509
           + +TY  LI   +     + A+ I++EM+ SG  P TI   NM+
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 164/395 (41%), Gaps = 33/395 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y++++  L +  +     ++  EM EKG+   + T+   +  F ++     A  + 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M + K    V T N L+    +     EA+ L+D++  R   PN  TY+ ++ G+C+ 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  ++  M  KG  P+++  N +++G     +  D ++L   M   G   +  +Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 422 TIMIWKF---CKQNAA---------------VYTC--LITGFGNRRRMDIVYDLLKEMEE 461
             +I  F      NAA               + TC  L+ G  +  ++    ++ K M++
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 462 -----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
                       G  PD  TYN LI  +  +    EA  +Y+EM   G  P   TY+ ++
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               +    +   +++D M  +   P+  ++T LI G     R  +  +   EM  +G+ 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           A  + Y        + G      ++ Q+M  SG +
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 21/292 (7%)

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
           L     L  D L+ R  P++  +  L+G   R++       ++ +M  K  + D+ + NI
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------------------- 428
           +++      K   A+  F  +   G  P+V ++T ++                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C+ N   +T L+ G     R+     LL  M E G  P  +TY  ++  M  +     A+
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 489 RIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
            + ++M   S   P +  Y+ I+ S  + G +   + ++ EM  +G  PD  +Y  +I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
             S  R  +A + L+EMLE+ +   V+ YN       + G+ +  +EL  +M
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 51/238 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN+++            + +L+EM   GL   + T    ++      + K A
Sbjct: 425 GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484

Query: 299 VAIFELMNKYK-----------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---- 343
           + +F++M K K            +  V T N L+  L       EA+ L++++ HR    
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544

Query: 344 --------------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
                                           F+PN+ T+T L+ G+C+   + +   ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 604

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
            EM  +G   + + +  ++ G  K+G  + A+ +F+ M + G  P+   +R+    +W
Sbjct: 605 CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   + +TYN ++S L    +F     + EEM  +G++    T+   ++         +A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F+ M    F   V T   L+    ++    +   LF ++  R    N  TY  L+ G
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           + +V N+  A  ++ EMI  G  PD +    ML GL    +   A+ + E ++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 181/414 (43%), Gaps = 69/414 (16%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N  T+ ++M+ L R  +    V++L+ M E GL   + T+   ++      +   A+ + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 303 ELMNKYK-FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
             M +       V   + ++++L +     +AQ LF +++ +   P+L TY  ++ G+C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
                +A ++  EM+++   PDVV +N ++   +K GK  +A +L++ M  +G  PN  +
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 421 YTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y+ MI  FCKQN                       +  LI G+   +R+D   +LL EM 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 461 ERGCPPDGLTYNALI-----------KLMKIQKM------PD------------------ 485
           E G   D  TYN LI            L  +Q+M      PD                  
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 486 EAVRIYKEMVRS-----------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +A+ ++K M +S           G +P + TYN+++      G +    ++++EM  RG 
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 542

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            PD  +Y+ +I GL  Q R  EA +  + M  K     V+ +        +AGR
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 596



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 165/379 (43%), Gaps = 23/379 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +M ++ R  + + ++S+ ++M  K +   + +F I +  F +  +   A++ F  + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 141

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K      V T N LL  L       EA  LF ++ +    PN+ T+T L+ G CR   ++
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK-AKGPSPNVRSYTIM 424
           EA  + + M++ G +P  + +  +++G+ K G    A+ L   M+      PNV  Y+ +
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     +   Y  +I GF +  R      LL+EM ER  
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TYNALI     +    EA  +Y EM+  G  P   TY+ ++  + +    +    
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++  M  +GC P+  ++  LI G     R  +  + L EM E G+ A    YN       
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 585 RAGRSYVLDELAQKMRFSG 603
             G      +L Q+M  SG
Sbjct: 442 LVGDLNAALDLLQEMISSG 460



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN++++   +  +F     + +EM  +G++ +  T+   ++ F        A  +F LM
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 306 NKYKFKAGVDTINCLLEN-LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N L++   G  ++    +LL +  +     + TTY  L+ G+  V +L
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----------G 413
             A  +  EMI  G  PD+V  + +L+GL   GK  DA+++F+VM+             G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P+V++Y I               LI+G  N  +     +L +EM  RG  PD +TY++
Sbjct: 507 VEPDVQTYNI---------------LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           +I  +  Q   DEA +++  M    F P + T+  ++  Y + G  + G +++ EM RRG
Sbjct: 552 MIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 611

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +Y  LI G         A    +EM+  G+
Sbjct: 612 IVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 29/284 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G + N  T+N+++     A++ +  + +L EM E GL++   T+   ++ F    +   A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK---------HRFT---P 346
           + + + M        + T + LL+ L  +   K+A  +F  ++         H F    P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++ TY +L+ G       +EA  ++ EM  +G  PD + ++ M++GL K  +  +A ++F
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M +K  SPNV ++T +I  +CK                 R+D   +L  EM  RG   
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAG---------------RVDDGLELFCEMGRRGIVA 614

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMI 509
           + +TY  LI   +     + A+ I++EM+ SG  P TI   NM+
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 164/395 (41%), Gaps = 33/395 (8%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N   Y++++  L +  +     ++  EM EKG+   + T+   +  F ++     A  + 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           + M + K    V T N L+    +     EA+ L+D++  R   PN  TY+ ++ G+C+ 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L  A  ++  M  KG  P+++  N +++G     +  D ++L   M   G   +  +Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 422 TIMIWKF---CKQNAA---------------VYTC--LITGFGNRRRMDIVYDLLKEMEE 461
             +I  F      NAA               + TC  L+ G  +  ++    ++ K M++
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 462 -----------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
                       G  PD  TYN LI  +  +    EA  +Y+EM   G  P   TY+ ++
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
               +    +   +++D M  +   P+  ++T LI G     R  +  +   EM  +G+ 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           A  + Y        + G      ++ Q+M  SG +
Sbjct: 614 ANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 122/302 (40%), Gaps = 56/302 (18%)

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L  G+  +K L +A  ++++M+     P VV    ++  ++++ +    I L++ M+ K 
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 414 PSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVY 453
              ++ S+TI+I  FC                      +   +  L+ G     R+    
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT----------- 502
           +L  +M E  C P+ +T+  L+  +  +    EAV +   M+  G +PT           
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 503 -------------------------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                                    +  Y+ I+ S  + G +   + ++ EM  +G  PD
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
             +Y  +I G  S  R  +A + L+EMLE+ +   V+ YN       + G+ +  +EL  
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 598 KM 599
           +M
Sbjct: 350 EM 351



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 51/238 (21%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   ++ TYN+++            + +L+EM   GL   + T    ++      + K A
Sbjct: 425 GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDA 484

Query: 299 VAIFELMNKYK-----------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---- 343
           + +F++M K K            +  V T N L+  L       EA+ L++++ HR    
Sbjct: 485 LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544

Query: 344 --------------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371
                                           F+PN+ T+T L+ G+C+   + +   ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 604

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN---VRSYTIMIW 426
            EM  +G   + + +  ++ G  K+G  + A+ +F+ M + G  P+   +R+    +W
Sbjct: 605 CEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   + +TYN ++S L    +F     + EEM  +G++    T+   ++         +A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F+ M    F   V T   L+    ++    +   LF ++  R    N  TY  L+ G
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
           + +V N+  A  ++ EMI  G  PD +    ML GL    +   A+ + E ++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 182/401 (45%), Gaps = 26/401 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
            ++N+V+D L + R   R A  FF     +P       TYN+++  L +  +     S+ 
Sbjct: 71  FTYNVVIDTLCKARRISR-AIEFF-ETMPEPDVV----TYNTLLGGLCKNGRVAQACSLF 124

Query: 269 EEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
             M   G+   + T+   ++ F    + + A  + +LM   K    V +   ++  L ++
Sbjct: 125 GSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKN 184

Query: 328 KLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
           +   +A  LF+++K     P+  TY  L+ G C  + L EA  +   M++ GF+PD +  
Sbjct: 185 RKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITF 244

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----------------- 429
             ++EGL    +  +A  LF+ M  +G +P++ ++T+++ K C                 
Sbjct: 245 TALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPA 304

Query: 430 -KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
             +   +YT +    G RR  D    LL++M  RG PP+ +TY A  K +   K    A 
Sbjct: 305 CPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAY 364

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           R ++ M+  G +P +  YN+++  + +    +M  K+   M + G  P+  +Y  L+G  
Sbjct: 365 REFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHH 424

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             + +     + L  M+ +G +  V  ++   A L   G++
Sbjct: 425 CRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQA 465



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 19/303 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           T N+++ +L RAR+ E +V +   +  +    +  ++   + A     +  KA +    M
Sbjct: 2   TCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEM 61

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
            + K    V T N +++ L +++    A   F+ +     P++ TY  LLGG C+   + 
Sbjct: 62  AREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE---PDVVTYNTLLGGLCKNGRVA 118

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           +A  ++  M   G  P  V +  +++   K+ +   A  L ++M ++  SP V SY  +I
Sbjct: 119 QACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSII 178

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              CK                R++D  Y L +EM+  GC PD +TYN LI  + +++   
Sbjct: 179 NGLCKN---------------RKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLH 223

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +   MV +GF+P   T+  +++    T   +    ++  M ++GC PD  ++TVL+
Sbjct: 224 EAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLV 283

Query: 546 GGL 548
             L
Sbjct: 284 SKL 286



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 181/419 (43%), Gaps = 34/419 (8%)

Query: 209 LSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           ++ N ++D+LER R + +    FR       KP    N+ +Y  ++  L R  + +   S
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKP----NALSYCYLVKALCRTGKIDKACS 56

Query: 267 MLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
            + EM  EK +  + T+ + ++    A+   +A+  FE M +      V T N LL  L 
Sbjct: 57  TIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLC 112

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           ++    +A  LF  ++    TP+  TYT L+  +C++     A  +   M  +   P V 
Sbjct: 113 KNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVY 172

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------- 429
           ++  ++ GL K  K   A +LFE MK  G  P+  +Y  +I   C               
Sbjct: 173 SYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVM 232

Query: 430 -----KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                + +   +T LI G     R+   + L + M ++GC PD +T+  L+  + I +  
Sbjct: 233 VENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKL 292

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
             A+ + +          +  Y  I +   +   ++   ++  +M RRG  P+  +YT  
Sbjct: 293 RPALSVVRNY--PACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAF 350

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             GL        AY+    MLE+G++  ++ YN       +A R  + +++ + M  SG
Sbjct: 351 FKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSG 409


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF    + YN +++   +         +  E+ ++GL  +  +F   +N    ++   + 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             + + M + +    V T + L+  L +      A+ LFD+++ R   PN  T+T L+ G
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R + +  A   +++M+  G KPD+V +N +L GL K+G  + A KL + MK  G  P+
Sbjct: 338 QYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPD 397

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT +I  +CK+                 ++   ++ K M E G   D + + ALI  
Sbjct: 398 KITYTTLIDGYCKEG---------------DLESAMEIRKGMNEEGVVLDNVAFTALISG 442

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                   +A R  +EMV +G KP   TY M++  Y + GN +MG K+  EM   G  P 
Sbjct: 443 FCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPG 502

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +Y VL+ GL  Q +   A   LE ML  G+    + YN       + G++
Sbjct: 503 VITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKA 554



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 44/379 (11%)

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFE--------------------TMVSMLEEMGE 273
           W    P F H S++Y +M + L   + F+                       ++L+  G 
Sbjct: 90  WLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGT 149

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333
           +   S   F   M A+  +     A+  F L+    F+        LL+ +  S  P   
Sbjct: 150 R--CSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTI 207

Query: 334 QLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
              + + L++ F P +  Y +L+  +C+  ++ +A  ++NE+  +G +P  V+ N ++ G
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L K     +  +L + M+     P+V +Y+++I   CK+                R+D+ 
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEG---------------RLDVA 312

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L  EM++RG  P+G+T+ ALI      +  D A+  Y +M+  G KP +  YN ++  
Sbjct: 313 EQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G+    RK+ DEM   G  PD  +YT LI G   +     A +  + M E+G+   
Sbjct: 373 LCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV--- 429

Query: 573 VLDYNKFAADLS---RAGR 588
           VLD   F A +S   R GR
Sbjct: 430 VLDNVAFTALISGFCRDGR 448



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P V+ Y I+I KFCK+            G+ R   ++++   E+ +RG  P  +++N
Sbjct: 218 GFPPKVQYYNILINKFCKE------------GSIRDAKLIFN---EIRKRGLRPTTVSFN 262

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +   +  DE  R+ K M  +   P + TY++++    + G  ++  +++DEM +R
Sbjct: 263 TLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR 322

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  P+  ++T LI G     R   A     +ML  G+K  ++ YN     L + G     
Sbjct: 323 GLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKA 382

Query: 593 DELAQKMRFSG 603
            +L  +M+  G
Sbjct: 383 RKLVDEMKMVG 393



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 103/230 (44%), Gaps = 20/230 (8%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
           YN++++ L +         +++EM   G+   + T+   ++ +    + + A+ I + MN
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMN 425

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           +            L+    R    ++A+  L + ++    P+  TYT+++ G+C+  N+ 
Sbjct: 426 EEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVK 485

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
              ++  EM   G KP V+ +N+++ GL K G+  +A  L E M   G +P+  +Y I++
Sbjct: 486 MGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILL 545

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
              CK   A                   DLLK   E+G   D   Y +L+
Sbjct: 546 EGHCKNGKA------------------EDLLKLRNEKGLIVDYAYYTSLV 577


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 28/305 (9%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL----GRSKLPKEAQLL 336
           TF + +NA     +  KA  + E M  Y +   V + N L++      G  K+ K   +L
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVL 284

Query: 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
            + +++  +PNLTT+ +L+ G+ +  NL  + +V+ EM+D+   P+V+ +N ++ GL   
Sbjct: 285 KEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNG 344

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
           GK ++AI + + M + G  PN+ +Y  +I  FCK                  M    D+ 
Sbjct: 345 GKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGM---------------MKEALDMF 389

Query: 457 KEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             ++ +G  P    YN LI    KL KI    D+   + +EM R G  P + TYN ++  
Sbjct: 390 DSVKGQGTRPTTRMYNMLIDAYCKLGKI----DDGFALKEEMEREGIVPDVGTYNCLIAG 445

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + GN E  +K++D++  +G  PD  ++ +L+ G  S+  S +A   L+EM + G+K  
Sbjct: 446 LCRNGNIEAAKKLFDQLTNKG-LPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPR 504

Query: 573 VLDYN 577
            L YN
Sbjct: 505 HLTYN 509



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 27/256 (10%)

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           ++ EMI +  +P+V   N+++  L K GK + A  + E MK  G SPNV SY  +I  +C
Sbjct: 210 LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269

Query: 430 K-----------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           K                        N   +  LI GF     +     + KEM ++   P
Sbjct: 270 KLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIP 329

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           + +TYN+LI  +      +EA+ +  +MV +G +P + TY+ ++  + + G  +    ++
Sbjct: 330 NVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMF 389

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           D +  +G  P    Y +LI       +  + +   EEM  +G+   V  YN   A L R 
Sbjct: 390 DSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449

Query: 587 GR----SYVLDELAQK 598
           G       + D+L  K
Sbjct: 450 GNIEAAKKLFDQLTNK 465



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 42/294 (14%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYNS+++ L    +    + M ++M   G+  ++ T+   +N F      K+A+ +F
Sbjct: 330 NVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMF 389

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + +     +      N L++   +  K+     L  +  +    P++ TY  L+ G CR 
Sbjct: 390 DSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N+  A ++++++ +KG  PD+V  +I++EG    G+   A  L + M   G  P   +Y
Sbjct: 450 GNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTY 508

Query: 422 TIMIWKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
            IM+  +CK+                     N A Y  L+ G+  + +++    LL EM 
Sbjct: 509 NIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI--HTYNMIMKS 512
           E+G  P+ +TY              E V+  +EMV  GF P I  H +N+  KS
Sbjct: 569 EKGLVPNRITY--------------EIVK--EEMVDKGFVPDIEGHLFNVSTKS 606



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 20/214 (9%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+K   ++   ++  LLK  + +D   L++ M  +   PNV ++ ++I   CK       
Sbjct: 183 GYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCK------- 235

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKE 493
              TG  N+ R     D++++M+  G  P+ ++YN LI    KL    KM  +A  + KE
Sbjct: 236 ---TGKMNKAR-----DVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMY-KADAVLKE 286

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV +   P + T+N+++  +++  N     KV+ EM+ +   P+  +Y  LI GL +  +
Sbjct: 287 MVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGK 346

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             EA    ++M+  G++  ++ Y+       + G
Sbjct: 347 INEAIGMRDKMVSAGVQPNLITYHSLINGFCKNG 380



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 2/167 (1%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           ++ G   +  TYN +++ L R    E    + +++  KGL  + TF I M  + +  E +
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESR 487

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVL 354
           KA  + + M+K   K    T N +++   +    K A  +  ++  + R   N+ +Y VL
Sbjct: 488 KAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVL 547

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
           L G+ +   L +A  + NEM++KG  P+ + + I+ E ++  G   D
Sbjct: 548 LQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPD 594



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           N+ +   L+  + N  R ++ ++  K     G     ++   L+  +  Q    +   +Y
Sbjct: 152 NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLY 211

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           KEM+R   +P + T+N+++ +  +TG     R V ++M   G  P+  SY  LI G    
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKL 271

Query: 552 DRSGEAYK---YLEEMLEKGMKAPVLDYN 577
             +G+ YK    L+EM+E  +   +  +N
Sbjct: 272 GGNGKMYKADAVLKEMVENEVSPNLTTFN 300


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 170/386 (44%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   N  TY+S++ +L ++ +      +L EM ++G+      +   ++ F      + A
Sbjct: 175 GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAA 234

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F  M   +        + L+  L  S    EA  LF+++ K  F P+  TYT L+ G
Sbjct: 235 YKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDG 294

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  + +A  + N+M+  G  P+VV +  + +GL K G+   A +L   M  KG   N
Sbjct: 295 YCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLN 354

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y  ++   CK                     +   YT L+  +     M    +LL+
Sbjct: 355 ISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLR 414

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG  P  +T+N L+  + +    ++  R+ K M+  G  P   TYN IMK Y    
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRN 474

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N  +  +++  M  +G  PD N+Y +LI G        EA+   +EM+EK        YN
Sbjct: 475 NMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYN 534

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  +  +     +L ++MR  G
Sbjct: 535 ALIKGFFKRKKLLEARQLFEEMRREG 560



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 169/360 (46%), Gaps = 22/360 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N+ +YN +M+ L R  +      +L  M  KG +  + ++   ++ +    E +K 
Sbjct: 105 GVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKV 164

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           V + + M     K  + T + ++  L +S K+ +  ++L + +K    P+   YT L+ G
Sbjct: 165 VQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDG 224

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++ N   A ++++EM  +   PD +A + ++ GL   GK  +A KLF  M  KG  P+
Sbjct: 225 FCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPD 284

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I  +CK                     N   YT L  G      +D   +LL 
Sbjct: 285 EVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLH 344

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  +G   +  TYN ++  +       +AV++ +EM  +G  P   TY  +M +Y++TG
Sbjct: 345 EMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTG 404

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                R++  EM+ RG  P   ++ VL+ GL    +  +  + L+ MLEKG+      YN
Sbjct: 405 EMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYN 464



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 267 MLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  EM +KG    E T+   ++ +    E KKA  +   M +      V T   L + L 
Sbjct: 272 LFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLC 331

Query: 326 RS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           +S +L    +LL +  +     N++TY  ++ G C+  N+++A ++  EM + G  PD +
Sbjct: 332 KSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTI 391

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +  +++   K G+   A +L   M  +G  P V ++ +++   C               
Sbjct: 392 TYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSG------------ 439

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              +++    LLK M E+G  P+  TYN+++K   I+     +  IY+ M   G  P  +
Sbjct: 440 ---KLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSN 496

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN+++K + +  N +    +  EM+ +      +SY  LI G   + +  EA +  EEM
Sbjct: 497 TYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556

Query: 565 LEKGMKAPVLDYNKFA 580
             +G+ A    YN F 
Sbjct: 557 RREGLVASAEIYNLFV 572



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 50/307 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY ++   L ++ + +T   +L EM  KGL L++ T+   +N    A    +A
Sbjct: 315 GLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           V + E M                         KEA L          P+  TYT L+  +
Sbjct: 375 VKLMEEM-------------------------KEAGL---------HPDTITYTTLMDAY 400

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            +   +++A  +  EM+D+G +P VV  N+++ GL   GK  D  +L + M  KG  PN 
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNA 460

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y  ++ ++C +N                M I  ++ + M  +G  PD  TYN LIK  
Sbjct: 461 ATYNSIMKQYCIRN---------------NMRISTEIYRGMCAQGVVPDSNTYNILIKGH 505

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              +   EA  ++KEMV   F  T  +YN ++K +F+       R++++EM R G     
Sbjct: 506 CKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASA 565

Query: 539 NSYTVLI 545
             Y + +
Sbjct: 566 EIYNLFV 572



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           +V++E    G   +  ++NI++  L ++GK  +A  L   M+ KG  P+V SYT +I  +
Sbjct: 96  KVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGY 155

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C                   +  V  L+KEM+ +G  P+  TY+++I L+       E  
Sbjct: 156 CHVG---------------ELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGE 200

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++ +EM++ G  P    Y  ++  + + GN +   K++ EM  R   PD  +++ LI GL
Sbjct: 201 KVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGL 260

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
               +  EA K   EM++KG +   + Y        + G 
Sbjct: 261 SGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGE 300



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLMKIQKMPDEA 487
           N   Y  L+       ++   + LL  ME +GC PD ++Y  +I     + ++QK+    
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKV---- 164

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           V++ KEM   G KP ++TY+ I+    ++G    G KV  EM++RG  PD   YT LI G
Sbjct: 165 VQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDG 224

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607
                 +  AYK   EM  + +    + ++     LS +G+    D+L  +M   G FE 
Sbjct: 225 FCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG-FEP 283

Query: 608 SNV 610
             V
Sbjct: 284 DEV 286



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%)

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
            ++++ E  + G      +YN++M S F+ G       +   M  +GC PD  SYT +I 
Sbjct: 94  VLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIID 153

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           G        +  + ++EM  KG+K  +  Y+     L ++G+    +++ ++M   G F
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVF 212


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 166/349 (47%), Gaps = 24/349 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAI 301
           +S TYN +++ L  AR F   V  L+ EM  +G++ ++ T+   ++    + + + A A 
Sbjct: 301 SSFTYNPLITGL-LARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAK 359

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
           F  M        V T N LL    ++   KEA LLF  L+     P + TY +L+ G+CR
Sbjct: 360 FVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 419

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           + +L EA R+  EM+++G  PDV  + I+++G   +   +   + F+ M +KG  P+  +
Sbjct: 420 LGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFA 479

Query: 421 YT--------------------IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y                     +++ +    +   Y  LI G      +    +L+ +M 
Sbjct: 480 YNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMI 539

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             G  PD +TY  LI     +    EA + + +M+  G  P+  TY +I+ +Y + GN  
Sbjct: 540 SNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLY 599

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                + +M+  G  P++ +Y VLI  L    R+  AY++  EMLE+G+
Sbjct: 600 SAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGL 648



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 153/330 (46%), Gaps = 22/330 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G      TYN+M+  L ++ Q E   +   EM   GLL  + T+   +N +  A  +K+A
Sbjct: 332 GIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEA 391

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + +F  + +      V T N L++   R    +EA+ L +++ +    P++ TYT+L+ G
Sbjct: 392 LLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKG 451

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              V +L      ++EM+ KG +PD  A+N  +   + +G  S + +L EV+  +G S +
Sbjct: 452 SHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSD 511

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y I+I   CK                     +   YTCLI     R  +        
Sbjct: 512 TVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFN 571

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M   G PP  +TY  +I     +     A   +++M+  G +P   TYN+++ +  + G
Sbjct: 572 DMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMG 631

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
             ++  + + EM+ RG  P+  +YT+LI G
Sbjct: 632 RTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 59/301 (19%)

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS--PNVRSYTIMIWK 427
           V  EM+  G +P +V +N +L+   K G++     L + M+A+G S  PN  +Y ++I  
Sbjct: 218 VHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAG 277

Query: 428 FC-------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
                                K ++  Y  LITG   R  +  V DL  EME  G  P  
Sbjct: 278 LARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTV 337

Query: 469 LTYNALI--------------KLMKIQKM---PD------------------EAVRIYKE 493
           +TYNA+I              K ++++ M   PD                  EA+ ++ +
Sbjct: 338 VTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGD 397

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           + R+G  PT+ TYN+++  Y + G+ E  R++ +EM+ +GC PD  +YT+L+ G  +   
Sbjct: 398 LRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCS 457

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYN-KFAADLSRA--GRSYVLDELAQKMRFSGKFEVSNV 610
                ++ +EML KG++     YN +  A+++     +S+ L E+      S      N+
Sbjct: 458 LAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNI 517

Query: 611 L 611
           L
Sbjct: 518 L 518



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 169/367 (46%), Gaps = 18/367 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A + +  N ++ +L  A +++ M ++  EM + G+  S+ T+   +++F+    + K 
Sbjct: 191 GVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKI 250

Query: 299 VAIFELMNKYKFKAGVD--TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
             + + M         +  T N ++  L R    +EA  L ++++     +  TY  L+ 
Sbjct: 251 DMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLIT 310

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G      + +   +  EM ++G  P VV +N M+ GLL+ G+   A   F  M+A G  P
Sbjct: 311 GLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLP 370

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V +Y  ++  +CK        L+  FG+ RR              G  P  LTYN LI 
Sbjct: 371 DVITYNSLLNGYCKAGNQKEALLL--FGDLRRA-------------GLAPTVLTYNILID 415

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
                   +EA R+ +EMV  G  P ++TY ++MK      +  M R+ +DEM+ +G  P
Sbjct: 416 GYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRP 475

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  +Y   I   I+     ++++  E ++ +G+ +  + YN     L + G     +EL 
Sbjct: 476 DCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELM 535

Query: 597 QKMRFSG 603
            +M  +G
Sbjct: 536 MQMISNG 542



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 157/379 (41%), Gaps = 33/379 (8%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G   +  TYN+++      GR  + + ++  +E  G   L +  T+ + +   A     +
Sbjct: 226 GIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLE 285

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  + E M   K KA   T N L+  L  R  + K   L  +       P + TY  ++
Sbjct: 286 EAAELVEEMRLSK-KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMI 344

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G  +   +  A   + EM   G  PDV+ +N +L G  K G + +A+ LF  ++  G +
Sbjct: 345 HGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLA 404

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
           P V +Y I+I  +C+                     +   YT L+ G  N   + +  + 
Sbjct: 405 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREF 464

Query: 456 LKEMEERGCPPDGLTYN----ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             EM  +G  PD   YN    A I L  I K    + ++ + ++  G      TYN+++ 
Sbjct: 465 FDEMLSKGLRPDCFAYNTRICAEITLGDISK----SFQLREVIMLEGISSDTVTYNILID 520

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              +TGN +   ++  +MI  G  PD  +YT LI     +    EA K+  +M+  G+  
Sbjct: 521 GLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPP 580

Query: 572 PVLDYNKFAADLSRAGRSY 590
             + Y        R G  Y
Sbjct: 581 SAVTYTVIIHAYCRRGNLY 599



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 37/151 (24%)

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
            +EM   G  PD    N ++++++     D+   ++ EM++ G +P+I TYN ++ S+ +
Sbjct: 184 FREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSK 243

Query: 516 TGNYEMGRKVWDEMIRRG--CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            G  +    +  EM  RG  C P+D +Y V+I GL                         
Sbjct: 244 EGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGL------------------------- 278

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
                     +R G      EL ++MR S K
Sbjct: 279 ----------ARKGYLEEAAELVEEMRLSKK 299


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 161/328 (49%), Gaps = 18/328 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELM 305
           TYN+++  L ++ Q E       EM   GLL  + T+   +N +  A   K+A+ +   +
Sbjct: 351 TYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDL 410

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNL 364
            +      V T N L++   R    +EA+ L +++  +   P++ TYT+L+ G  +V+NL
Sbjct: 411 RRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNL 470

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A   ++EM+ KG +PD  A+N  +   L +G    A +L EVM  KG  P+  +Y ++
Sbjct: 471 PMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVI 530

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I   CK             GN +      DL  +M   G  PD +TY  LI     + + 
Sbjct: 531 IDGLCKT------------GNLKDAK---DLKMKMVSDGLQPDCITYTCLIHAHCERGLL 575

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA ++   MV  G +P++ TY +++ +  + GN       + +M+  G  P++ +Y VL
Sbjct: 576 SEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL 635

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           I  L    R+  AY +  EMLE+G+ AP
Sbjct: 636 IHALCRTGRTLLAYHHFHEMLERGL-AP 662



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 213/475 (44%), Gaps = 39/475 (8%)

Query: 127 HNLATNILDSNCVNYRNVSSVTDDNQDSDGEC---DGNNSESEITSVSYKSTADP--REI 181
           H +A ++ D NCV    +  + D  +  D      +    E E T V+Y +  D   +E 
Sbjct: 202 HGVAPDVRDCNCV----LRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEG 257

Query: 182 ERVCKVIDELFSLDRNMEAVLDECGIN-LSHNLVVDVLERFRHARRPAFRFFCWAGDKPG 240
            +     DE   L + ME     C +N +++N+V+  L R  H    A         K  
Sbjct: 258 RK-----DEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKA 312

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLE-EMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
              +S TYN +++ L   R F   V  L+ EM  +G++ ++ T+   ++    +++ + A
Sbjct: 313 ---SSFTYNPLITAL-LERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAA 368

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
              F  M        + T N +L    ++   KEA  L   L+     P + TY  L+ G
Sbjct: 369 QLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDG 428

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR+  L EA R+  EM+++G  PDV  + I++ G  K+     A + F+ M +KG  P+
Sbjct: 429 YCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPD 488

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
             +Y   I   C +       LI G  ++      + L + M  +G  PD +TYN +I  
Sbjct: 489 CFAYNTRI---CAE-------LILGDTHK-----AFQLREVMMLKGIYPDTVTYNVIIDG 533

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L K   + D A  +  +MV  G +P   TY  ++ ++ + G     RK+ + M+  G  P
Sbjct: 534 LCKTGNLKD-AKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQP 592

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
              +YT+LI     +     AY +  +ML+ G++   + YN     L R GR+ +
Sbjct: 593 SVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLL 647



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 166/370 (44%), Gaps = 24/370 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A + R  N ++ +L  A +++ + ++  EM +  +  ++ T+   +++F   KE +K 
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFL--KEGRKD 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL-----LFDKLKHRFTPNLTTYTV 353
            A   L+ + + + G   +N +  N+  S L +E  L     L D ++     +  TY  
Sbjct: 261 EASM-LLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNP 319

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+        + +   +  EM ++G  P +V +N ++ GLLK  +   A   F  M+A G
Sbjct: 320 LITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMG 379

Query: 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
             P++ +Y  M+  +CK             GN +       LL ++   G  P  LTYN 
Sbjct: 380 LLPDLITYNSMLNGYCKA------------GNLKE---ALWLLGDLRRAGLAPTVLTYNT 424

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI         +EA R+ +EMV  G  P + TY ++M    +  N  M R+ +DEM+ +G
Sbjct: 425 LIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKG 484

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             PD  +Y   I   +    + +A++  E M+ KG+    + YN     L + G      
Sbjct: 485 LQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAK 544

Query: 594 ELAQKMRFSG 603
           +L  KM   G
Sbjct: 545 DLKMKMVSDG 554



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 22/238 (9%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAV 299
           FA+N+R    +  ILG   +      + E M  KG+     T+ + ++        K A 
Sbjct: 490 FAYNTRICAEL--ILGDTHK---AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAK 544

Query: 300 AIFELMNKYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
            +   M     +    T  CL+  +  R  L +  +LL   +     P++ TYT+L+   
Sbjct: 545 DLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTC 604

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           CR  NL  A   + +M+D G +P+ + +N+++  L + G+   A   F  M  +G +PN 
Sbjct: 605 CRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNK 664

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            +YT++I   C++            GN      +Y    EM + G PPD  T+NAL K
Sbjct: 665 YTYTLLIDGNCRE------------GNWADAIRLY---FEMHQNGIPPDYCTHNALFK 707



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 20/253 (7%)

Query: 359 CRVKNLMEAGR------VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           C ++ L +A R      V+ EM+    +P +V +N +L+  LK G++ +A  L + M+ +
Sbjct: 213 CVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQ 272

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G               C  N   Y  +I+       ++    L+  M          TYN
Sbjct: 273 GGG-------------CLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSK-KASSFTYN 318

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI  +  +    +   +  EM   G  PT+ TYN I+    ++   E  +  + EM   
Sbjct: 319 PLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAM 378

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  PD  +Y  ++ G        EA   L ++   G+   VL YN       R G     
Sbjct: 379 GLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEA 438

Query: 593 DELAQKMRFSGKF 605
             L ++M   G F
Sbjct: 439 RRLKEEMVEQGCF 451



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  TY VL+   CR    + A   ++EM+++G  P+   + ++++G  + G  +DAI+L
Sbjct: 627 PNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRL 686

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCK 430
           +  M   G  P+  ++  +   F K
Sbjct: 687 YFEMHQNGIPPDYCTHNALFKGFDK 711



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 3/143 (2%)

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L  M   GL  S+ T+ I ++          A   F  M     +    T N L+  L 
Sbjct: 581 LLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 640

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           R+     A   F ++  R   PN  TYT+L+ G CR  N  +A R++ EM   G  PD  
Sbjct: 641 RTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYC 700

Query: 385 AHNIMLEGLLKIGKRSDAIKLFE 407
            HN + +G  K G    AI+  E
Sbjct: 701 THNALFKGFDK-GHMYHAIEYLE 722


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 22/349 (6%)

Query: 262 ETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           E M   L +    GL  S   F   + A ++A     AV  F  M++++ +      N +
Sbjct: 119 EAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTI 178

Query: 321 LENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           L+ L  S +   A  L++++      PN  TY VL+ G C+     +A ++++EM+D+G 
Sbjct: 179 LKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGI 238

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------- 430
            P+V  + ++L  L   GK  +A++L   MK KG  P+  +Y   +   CK         
Sbjct: 239 MPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQ 298

Query: 431 -----QNAAV------YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                Q+         Y+CLI G    RR D  +   K M ER   PD + Y  +I+   
Sbjct: 299 RLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCA 358

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                ++A+     M + GF P    YN ++K     G+ E    +  EM++     D  
Sbjct: 359 EAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           + T++I GL  +    EA +  +EM E G    V+ YN       R GR
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGR 467



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 173/443 (39%), Gaps = 75/443 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G A N  TYN +M  L +       + M +EM ++G++ +++ + + +++   A +  +A
Sbjct: 202 GCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEA 261

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           V +   M          T N  L  L +     EA Q L       F   L  Y+ L+ G
Sbjct: 262 VQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDG 321

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             + +   E    +  M+++   PDVV + IM+ G  + G+  DA+   +VMK KG  P+
Sbjct: 322 LFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPD 381

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
              Y  ++   C                      ++   T +I G   R  +D    +  
Sbjct: 382 TFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFD 441

Query: 458 EMEERGCPPDGLTYNALI-----------KLMKIQKM-----PD---------------- 485
           EM E GC P  +TYNALI             M   KM     P                 
Sbjct: 442 EMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSE 501

Query: 486 ----------------EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
                           +A ++ + ++ SG  P + TYN ++    +  N +   +++ E+
Sbjct: 502 SLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKEL 561

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR- 588
             +G  PD+ +Y  LI GL+   R  +A    + +L+ G    +  YN     L R  + 
Sbjct: 562 QLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKL 621

Query: 589 ----SYVLDELAQKMRFSGKFEV 607
               +  LD L +K  F  + EV
Sbjct: 622 SQAINLWLDYLPKKYNFPVESEV 644



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 170/406 (41%), Gaps = 54/406 (13%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GF  ++  YN+++ +L      E   ++  EM +  L L   T  I +          
Sbjct: 375 KKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL-------- 348
           +A+ IF+ M ++     V T N L++   R    +EA++LF K++    P+L        
Sbjct: 435 EAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGA 494

Query: 349 ------TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
                  +   L+   C+   +++A ++   +ID G  PDVV +N ++ GL K      A
Sbjct: 495 NQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGA 554

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           ++LF+ ++ KG SP               +   Y  LI G     R +    L + + + 
Sbjct: 555 VRLFKELQLKGISP---------------DEITYGTLIDGLLRAHRENDAMMLFQNILQS 599

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS-YFQTGNYEM 521
           G  P    YN++++ +   K   +A+ ++ +     + P    YN  ++S      + E+
Sbjct: 600 GSSPSLSIYNSMMRSLCRMKKLSQAINLWLD-----YLP--KKYNFPVESEVLANAHKEI 652

Query: 522 GRKVWDEMIRRGCCPDD-------NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK---- 570
                D+ +R     D        N YT+ + GL    R+ +A +    + E G+     
Sbjct: 653 EDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPA 712

Query: 571 --APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614
             A +++Y  +  +L+ A    +L  L++ +  S    V N L RW
Sbjct: 713 CCALLINYLCWDRNLN-AAVDIMLYALSKSIILSQP--VGNRLLRW 755



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 34/228 (14%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
            F   V AH+         G+ +DA++ F  M      P                A VY 
Sbjct: 139 AFAALVAAHS-------SAGRNADAVQAFSRMDEFQSRPT---------------AFVYN 176

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            ++    +   + +   L   M   GC P+  TYN L+  +  Q M  +A++++ EM+  
Sbjct: 177 TILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDR 236

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P +  Y +++ S    G  +   ++   M  +GC PD+ +Y   + GL    R  EA
Sbjct: 237 GIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA 296

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
           ++ L  ML+ G          FA  L   G S ++D L Q  RF   F
Sbjct: 297 FQRL-VMLQDG---------GFALGLK--GYSCLIDGLFQARRFDEGF 332



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++D L +    G P     + AL+          +AV+ +  M     +PT   YN I+K
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILK 180

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
           +   +G   +   +++ M+  GC P+  +Y VL+ GL  Q  +G+A K  +EML++G+  
Sbjct: 181 ALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMP 240

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQ 597
            V  Y    + L  AG+   +DE  Q
Sbjct: 241 NVKIYTVLLSSLCNAGK---IDEAVQ 263


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 174/361 (48%), Gaps = 25/361 (6%)

Query: 217 VLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           V E  R  + P  A +FF WA +  GF HN ++Y  M+ ILGRAR      + L  +  +
Sbjct: 89  VFEVLRLIKTPSKALQFFNWAPEL-GFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRR 147

Query: 275 --GLLSMET--FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
             G + +E   F   + ++  A   +++V +F  M        V T N LL  L +    
Sbjct: 148 SNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRT 207

Query: 331 KEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             AQ +FD++   +  TP+  T+ +L+ G+C+   + E  R + EM      PD+V +N 
Sbjct: 208 NMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNT 267

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           +++GL + GK + A  +   M  K  + N              +   YT L+ G+  +  
Sbjct: 268 LVDGLCRAGKVNIAHNVVNGMVKKSTNLN-------------PDVVTYTTLVRGYCMKHE 314

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYK-EMVRSGFKPTIHTY 506
           +D    + +EM  +G  P+ +TYN LIK L ++QK+ D+  +I++  +   GF P   T 
Sbjct: 315 IDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKI-DKIKQIFEGALGGGGFIPDTCTL 373

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N +M ++   GN     +V+++M+     PD  +Y+VLI  L  +     A +  +E+ E
Sbjct: 374 NTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSE 433

Query: 567 K 567
           K
Sbjct: 434 K 434



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 173/372 (46%), Gaps = 58/372 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET--FKIAMNAFAAAKERKK 297
           G + +  T+NS++ IL +  +     S+ +EM     ++ +T  F I +  F       +
Sbjct: 186 GVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDE 245

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVL 354
               F+ M+++K    + T N L++ L R+     A  + + +  + T   P++ TYT L
Sbjct: 246 GFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTL 305

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI------------------ 396
           + G+C    + EA  V+ EM+ KG KP+ + +N +++GL ++                  
Sbjct: 306 VRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGG 365

Query: 397 ------------------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
                             G  +DA+++FE M      P+  +Y+++I   C++       
Sbjct: 366 FIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQR------- 418

Query: 439 LITGFGNRRRMDIVYDLLKEME----ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
                GN  R + ++D L E E    + GC P    Y ++ + +       +A R+++++
Sbjct: 419 -----GNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQL 473

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           ++ G +  + ++ +++K + + G +E G ++   M+RR   PD  +Y  LI GL+ +   
Sbjct: 474 MKRGTQDPL-SFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEP 532

Query: 555 GEAYKYLEEMLE 566
             AY+ LE+M++
Sbjct: 533 LVAYQTLEKMIK 544



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 5/200 (2%)

Query: 405 LFEVMK-AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +FEV++  K PS  ++ +          N   Y  ++   G  R +++  + L  ++ R 
Sbjct: 89  VFEVLRLIKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRS 148

Query: 464 CPPDGLT---YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
                L    +N+LI+      +  E+V+++  M   G  P++ T+N ++    + G   
Sbjct: 149 NGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTN 208

Query: 521 MGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           M + V+DEM+   G  PD  ++ +LI G        E +++ +EM        ++ YN  
Sbjct: 209 MAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTL 268

Query: 580 AADLSRAGRSYVLDELAQKM 599
              L RAG+  +   +   M
Sbjct: 269 VDGLCRAGKVNIAHNVVNGM 288


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 196/471 (41%), Gaps = 59/471 (12%)

Query: 190 ELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRT 247
           E  ++DR +  + DE GI    +L + ++  +  A  P    R      +        ++
Sbjct: 120 EFKTIDRLLMQMKDE-GIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKS 178

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN ++ IL      +   ++  +M  + +  ++ TF + M A  A  E   A+++   M 
Sbjct: 179 YNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMT 238

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K+           L+ +L +     EA QLL +       P+  T+  ++ G C+   + 
Sbjct: 239 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 298

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF------------------- 406
           EA ++ N M+ +GF PD + +  ++ GL KIG+   A  LF                   
Sbjct: 299 EAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFV 358

Query: 407 -------------EVMKAKGPSPNVRSYTIMIWKF--------------------CKQNA 433
                        +++ + G  P+V +Y  +I+ +                    CK N 
Sbjct: 359 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNV 418

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYK 492
             YT L+ GF    ++D  Y+LL EM   G  P+ + +N LI    K  ++P EAV I++
Sbjct: 419 YSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIP-EAVEIFR 477

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM R G KP ++T+N ++    +    +    +  +MI  G   +  +Y  LI   + + 
Sbjct: 478 EMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRG 537

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              EA K + EM+ +G     + YN     L RAG       L +KM   G
Sbjct: 538 EIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 176/399 (44%), Gaps = 26/399 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM- 286
           +   F W G + G+ H+   Y  ++  LG   +F+T+  +L +M ++G++  E+  I++ 
Sbjct: 88  SMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIM 147

Query: 287 -NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK-EAQLLFDKLKHRF 344
            +   A    +    + E+ N Y  +    + N +LE L      K  A + +D L  + 
Sbjct: 148 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 207

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P L T+ V++   C V  +  A  V  +M   G  P+ V +  ++  L K  + ++A++
Sbjct: 208 PPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 267

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCK----QNAA--VYTCLITGFGNRRRMDIVY----- 453
           L E M   G  P+  ++  +I   CK      AA  V   LI GF      DI Y     
Sbjct: 268 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPD---DITYGYLMN 324

Query: 454 --------DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTIH 504
                   D  K++  R   P  + +N LI         D+A  +  +MV S G  P + 
Sbjct: 325 GLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVC 384

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN ++  Y++ G   +  +V  +M  +GC P+  SYT+L+ G     +  EAY  L EM
Sbjct: 385 TYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEM 444

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
              G+K   + +N   +   +  R     E+ ++M   G
Sbjct: 445 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 483



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 168/389 (43%), Gaps = 27/389 (6%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   NS  Y +++  L +  +    + +LEEM   G +   ETF   +          
Sbjct: 239 KHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 298

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           +A  +   M    F     T   L+  L +      A+ LF ++     P    +  L+ 
Sbjct: 299 EAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PTSVIFNTLIH 355

Query: 357 GWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
           G+     L +A  V ++M+   G  PDV  +N ++ G  K G    A+++   M+ KG  
Sbjct: 356 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCK 415

Query: 416 PNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDL 455
           PNV SYTI++  FCK                     N   + CLI+ F    R+    ++
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 475

Query: 456 LKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
            +EM  +GC PD  T+N+LI  L ++ ++   A+ + ++M+  G      TYN ++ ++ 
Sbjct: 476 FREMPRKGCKPDVYTFNSLISGLCEVDEI-KHALWLLRDMISEGVVANTVTYNTLINAFL 534

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +  RK+ +EM+ +G   D+ +Y  LI GL       +A    E+ML  G+    +
Sbjct: 535 RRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSI 594

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             N     L R+G      E  ++M   G
Sbjct: 595 SCNILINGLCRSGMVEEAVEFQKEMVLRG 623



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 166/381 (43%), Gaps = 29/381 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF  +  TY  +M+ L +  + +    +   + +    +   F   ++ F        A 
Sbjct: 311 GFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP---TSVIFNTLIHGFVTHGRLDDAK 367

Query: 300 AIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           A+  +++  Y     V T N L+    +  L   A ++L D       PN+ +YT+L+ G
Sbjct: 368 AVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDG 427

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  + EA  + NEM   G KP+ V  N ++    K  +  +A+++F  M  KG  P+
Sbjct: 428 FCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 487

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V ++  +I   C+                     N   Y  LI  F  R  +     L+ 
Sbjct: 488 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 547

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  +G   D +TYN+LIK +      D+A  ++++M+R G  P+  + N+++    ++G
Sbjct: 548 EMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSG 607

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E   +   EM+ RG  PD  ++  LI GL    R  +      ++  +G+    + YN
Sbjct: 608 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYN 667

Query: 578 KFAADLSRAGRSY----VLDE 594
              + L + G  Y    +LDE
Sbjct: 668 TLMSWLCKGGFVYDACLLLDE 688



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 22/295 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET-FKIAMNAFAAAKERKKA 298
           G   N  +Y  ++    +  + +   ++L EM   GL      F   ++AF       +A
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGG 357
           V IF  M +   K  V T N L+  L      K A  LL D +      N  TY  L+  
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   + EA ++ NEM+ +G   D + +N +++GL + G+   A  LFE M   G  P+
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             S  I+I   C+                     +   +  LI G     R++    + +
Sbjct: 593 SISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 652

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           +++  G PPD +TYN L+  +       +A  +  E +  GF P   T++++++S
Sbjct: 653 KLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 125/254 (49%), Gaps = 25/254 (9%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERK 296
           + G   +  T+NS++S L    + +  + +L +M  +G+++   T+   +NAF    E K
Sbjct: 481 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 540

Query: 297 KAVAIFELMNKYKFKAGV---DTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYT 352
           +A    +L+N+  F+  +    T N L++ L R+    +A+ LF+K L+    P+  +  
Sbjct: 541 EAR---KLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCN 597

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +L+ G CR   + EA     EM+ +G  PD+V  N ++ GL + G+  D + +F  ++A+
Sbjct: 598 ILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE 657

Query: 413 GPSPNVRSY-TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           G  P+  +Y T+M W  CK       CL               LL E  E G  P+  T+
Sbjct: 658 GIPPDTVTYNTLMSW-LCKGGFVYDACL---------------LLDEGIEDGFVPNDRTW 701

Query: 472 NALIKLMKIQKMPD 485
           + L++ +  Q+  D
Sbjct: 702 SILLQSLVPQETLD 715


>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
 gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
          Length = 527

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 179/407 (43%), Gaps = 25/407 (6%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E  L    I+++ +++  VL            FF WA  +P    +  +Y+ ++  LGR
Sbjct: 89  IEQALSNVCIDVNVDIIGKVLNFGNLGGEAMVMFFNWALKQPMVPRDVGSYHVIVKALGR 148

Query: 258 ARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
            + F  M+ +L+EM   G+ + +    I +++F  A    KA+ +F  ++        + 
Sbjct: 149 RKFFVFMMQVLDEMRLNGIKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTEV 208

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           +N LL  L R      A  +F+ +K + + N+ TY V++GGW ++  + E  +V  EM  
Sbjct: 209 LNVLLSCLCRRCHVGAAASVFNSMKGKVSFNVDTYNVVVGGWSKLGRVNEIEKVMKEMEV 268

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF-------- 428
           +GF PD       LEGL + G+  +A+++F  MK K    +   Y  MI+ F        
Sbjct: 269 EGFSPDFNTLAFFLEGLGRAGRMDEAVEVFGSMKEK----DTAIYNAMIFNFISIGDFDG 324

Query: 429 ------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C+ N   Y+ +IT F   R++     +  EM  +G  P   T  + IK
Sbjct: 325 FMKYYNGMLSDNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIK 384

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +     P  A+ IYK+  +   K ++  Y +++    + G       VW EM   G   
Sbjct: 385 QLCSYGPPYAAMMIYKKTRKLECKISMEAYKILLMRLSKFGKCGSLLSVWQEMQECGYSS 444

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           D   Y  +I GL +  +   A   +EE L KG     L Y+K +  L
Sbjct: 445 DVEVYEYIISGLYNIGQLENAVLVMEEALRKGFCPSRLVYSKLSNKL 491



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/352 (18%), Positives = 134/352 (38%), Gaps = 60/352 (17%)

Query: 198 MEAVLDECGIN------LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           M  VLDE  +N      L  ++V+D      H  + A + F    D  G   ++   N +
Sbjct: 155 MMQVLDEMRLNGIKADLLMLSIVIDSFVNAGHVSK-AIQLFGNL-DDLGLCRDTEVLNVL 212

Query: 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311
           +S L R        S+   M  K   +++T+ + +  ++      +   + + M    F 
Sbjct: 213 LSCLCRRCHVGAAASVFNSMKGKVSFNVDTYNVVVGGWSKLGRVNEIEKVMKEMEVEGFS 272

Query: 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-------------------------- 345
              +T+   LE LGR+    EA  +F  +K + T                          
Sbjct: 273 PDFNTLAFFLEGLGRAGRMDEAVEVFGSMKEKDTAIYNAMIFNFISIGDFDGFMKYYNGM 332

Query: 346 ------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
                 PN+ TY+ ++  + R + + +A  +++EM+ +G  P        ++ L   G  
Sbjct: 333 LSDNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIKQLCSYGPP 392

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
             A+ +++  +      ++ +Y I++ +  K                     +  VY  +
Sbjct: 393 YAAMMIYKKTRKLECKISMEAYKILLMRLSKFGKCGSLLSVWQEMQECGYSSDVEVYEYI 452

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           I+G  N  +++    +++E   +G  P  L Y+ L   +    + + A R++
Sbjct: 453 ISGLYNIGQLENAVLVMEEALRKGFCPSRLVYSKLSNKLLASNLTERAYRLF 504


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 161/344 (46%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   +LE+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEES 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           ++  +L   M+A G  P+V +Y+++I   CK+                    N+  +T L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ K+M  +   PD +TYN LI  +       +A  +  EM   G 
Sbjct: 248 IDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 22/304 (7%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M++F    E + A ++F+ + K+  +  
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+    +     E   L + ++     P++ TY+VL+ G C+   L +A  +++
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFD 230

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+D G  P+ V+   +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK  
Sbjct: 231 EMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNG 290

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++  K M +     D + Y 
Sbjct: 291 DLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRD 410

Query: 533 GCCP 536
           G  P
Sbjct: 411 GYVP 414



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +     +A  LFD+ L +   PN  ++T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L   M  KG  P+
Sbjct: 251 HCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I   CK+                    +   YT LI+G     R      +L+
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           EM   G  P+  TY  +I     +       ++ KEM R G+ P++ T
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 16/247 (6%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAF 289
           FF WA  + GF  +   +N M+   G+ R F+    +++ M  + + +++ETF I M  +
Sbjct: 133 FFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRY 192

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
             A    +A+  F  M  Y  K      + L+  L R +   EAQ  FD LK +F P++ 
Sbjct: 193 VRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDKFEPDVI 252

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
            YT L+ GWCR  N+ EA RV+ EM   G KP+V  ++I+++ L + G+ + A  +F  M
Sbjct: 253 VYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEM 312

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
              G               C+ N+  Y  L+       R + V  +  +M+  GC PD +
Sbjct: 313 LDAG---------------CQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTV 357

Query: 470 TYNALIK 476
           TYN LI+
Sbjct: 358 TYNFLIE 364



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 17/237 (7%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
           F    +  N +++  G+ ++   A  + D +K R     + T+++L+  + R     EA 
Sbjct: 143 FDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAI 202

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
             +N M D   KPD +A +I++  L +  + S+A + F+ +K K   P+V  YT ++  +
Sbjct: 203 HAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDKF-EPDVIVYTNLVRGW 261

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C+             GN    + V+    EM+  G  P+  TY+ +I  +        A 
Sbjct: 262 CRA------------GNISEAERVF---GEMKVAGIKPNVYTYSIVIDSLCRCGQITRAH 306

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            ++ EM+ +G +P   TYN +M+ + + G  E   +V+++M R GC PD  +Y  LI
Sbjct: 307 DVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLI 363



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 342 HRFTPNLTTYTVLLGGWCR----VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           H  +P++  + +   G  R    V  ++ A   W    D GF     A N M++   K+ 
Sbjct: 104 HSISPSIIRHVIEQSGGVRHGIPVPQVL-AFFNWASYQD-GFDKSPEAFNEMVDFAGKVR 161

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
               A  + ++MKA+     V +++I++ ++ +   A     I  F NR           
Sbjct: 162 MFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEA--IHAF-NR----------- 207

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            ME+  C PD + ++ LI ++  ++   EA   +  + +  F+P +  Y  +++ + + G
Sbjct: 208 -MEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSL-KDKFEPDVIVYTNLVRGWCRAG 265

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N     +V+ EM   G  P+  +Y+++I  L    +   A+    EML+ G +   + YN
Sbjct: 266 NISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYN 325

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                  +AGR+  + ++  +M+  G
Sbjct: 326 SLMRIHVKAGRTEKVLQVYNQMKRLG 351


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 197/435 (45%), Gaps = 29/435 (6%)

Query: 172 YKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRF 231
           Y  T D R I R+ K+    F    + E  L+   + +   LV ++L +         +F
Sbjct: 51  YSRTLDERFI-RILKI----FKWGPDAEKALEVLKLKVDPRLVREIL-KIDVEVSVKIQF 104

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA--MNAF 289
           F WAG +  F H+S TY +++  L   R F  +   +++M  KG  +M   +++  +   
Sbjct: 105 FKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDM-VKGSCAMAPAELSEIVRIL 163

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFTP 346
             AK   +A+++F  +   K +    T N ++  L +    ++   L++++    H F P
Sbjct: 164 GKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCF-P 222

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           +  TY+ L+  + ++     A R+++EM + G +P    +  ++    K+GK  +A+ L 
Sbjct: 223 DTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLV 282

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           + M+A+                C      YT LI G G   R++  Y   K M + GC P
Sbjct: 283 KEMRARR---------------CLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKP 327

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +  N LI ++       +A++++ EM      P + TYN I+KS F+          W
Sbjct: 328 DVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSW 387

Query: 527 DEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            E +++ G  P   +Y++LI G    +R  +A   LEEM EKG       Y      L  
Sbjct: 388 FERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGV 447

Query: 586 AGRSYVLDELAQKMR 600
           A R  V +EL Q+++
Sbjct: 448 AKRYDVANELFQELK 462



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 168/361 (46%), Gaps = 23/361 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G    ++ Y ++M I  +  + E  + +++EM   + LL++ T+   +     +   + A
Sbjct: 254 GLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDA 313

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
              ++ M K   K  V  +N L+  LGRS   ++A  LFD++K     PN+ TY  ++  
Sbjct: 314 YMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKS 373

Query: 358 WCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
               K  +     W E + K G  P    ++I+++G  K  +   A+ L E M  KG  P
Sbjct: 374 LFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 433

Query: 417 NVRSYTIMI---------------WKFCKQN-----AAVYTCLITGFGNRRRMDIVYDLL 456
              +Y  +I               ++  K+N     A VY  +I  FG   R++   +L 
Sbjct: 434 CPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLF 493

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM++ GC PD   YNAL+  M   +  DEA  +++ M  +G  P I+++N+I+    +T
Sbjct: 494 NEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLART 553

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  +   +++ +M      PD  S+  ++G L       EA K ++EM  KG +  ++ Y
Sbjct: 554 GGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITY 613

Query: 577 N 577
           +
Sbjct: 614 S 614



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 152/326 (46%), Gaps = 31/326 (9%)

Query: 247 TYNSMMSILGRARQFE----TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF 302
           TY  ++  LG++ + E    T  +ML++  +  ++ M      +N    +   + A+ +F
Sbjct: 296 TYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNL---INILGRSNHLRDAIKLF 352

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
           + M        V T N ++++L  +K P  EA   F+++K     P+  TY++L+ G+C+
Sbjct: 353 DEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCK 412

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD-AIKLFEVMKAKGPSPNVR 419
              + +A  +  EM +KGF P   A+  ++   L + KR D A +LF+ +K      + R
Sbjct: 413 TNRVEKALLLLEEMDEKGFPPCPAAYCSLI-NTLGVAKRYDVANELFQELKENCGCSSAR 471

Query: 420 SYTIMIWKF--------------------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
            Y +MI  F                    C  +   Y  L+TG     RMD  + L + M
Sbjct: 472 VYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTM 531

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
           EE GC PD  ++N ++  +     P  A+ ++ +M  S  KP + ++N I+    + G +
Sbjct: 532 EENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLF 591

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLI 545
           E   K+  EM  +G   D  +Y+ ++
Sbjct: 592 EEAAKLMQEMSSKGFQYDLITYSSIL 617



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++R Y  M+   G+  +    +++  EM + G    +  +   M     A+   +A ++F
Sbjct: 469 SARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLF 528

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M +      +++ N +L  L R+  PK A  +F K+K+    P++ ++  +LG   R 
Sbjct: 529 RTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRA 588

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
               EA ++  EM  KGF+ D++ ++ +LE + K+
Sbjct: 589 GLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKV 623


>gi|125559062|gb|EAZ04598.1| hypothetical protein OsI_26748 [Oryza sativa Indica Group]
          Length = 514

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 209/470 (44%), Gaps = 49/470 (10%)

Query: 177 DPREIERVCKVIDELF-----SLDRNMEAV-LDECGINLSHNLVVDVLERFRHARRPAFR 230
           DP  + R+C V+ +       +L R +  + L     +    L +    RF  + RP  R
Sbjct: 45  DPSLLLRLCTVLYQHQHAPEDALRRRLSVLPLPSVAADDLRELFLQASARFPLSWRPVRR 104

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290
                    GFAH+  T    + +L  +R  + + S L       L S+   + A+   A
Sbjct: 105 LLDHLTAAHGFAHSPATAARFLDVLAESRNVDLLHSTLLSF-PPALRSLAALRAAIRGLA 163

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT 350
            A+E  K  ++  L         ++ I  ++ ++   KLP  A+ +  + +HR+  + T 
Sbjct: 164 PAREVGKVSSLLALFPDADRPRTLNFITDVVCSV--CKLPDVAEKVIKQAEHRYGVSQTG 221

Query: 351 YT--VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
               +L+ G+CR   L +A RVWN M  +G  P   A+  ++  L K  + +DA+K+F+ 
Sbjct: 222 RCCELLVVGYCRAGMLSDACRVWNGMERRGLDPGAAAYEEIVVTLFKNNRVADAMKVFDG 281

Query: 409 MKAKGPSPNVRS--YTIMIWKFCKQ--------------------NAAVYTCLITGFGNR 446
           M+ +G S   R   Y  ++   CK+                    +  V   L+ G   R
Sbjct: 282 MRRRGVSDGGRGGCYRAVVSWLCKEGRMWGAYMVFAEMFKRGVEVDGEVMGDLVYGLLVR 341

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
           RR+   Y +   ++E+    D   Y+ L+K +   K   EA  +++EMV +G +P +HTY
Sbjct: 342 RRVREGYRVFHGVKEK----DIALYHGLMKGLIRIKRAREATEVFREMVATGCEPNMHTY 397

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
            M+++ +      + GRK  D ++        N  ++ +GGL+   R+ EA K++E  + 
Sbjct: 398 IMLLQGHLG----KRGRKGRDPLV--------NFESIFVGGLVKPGRTLEATKFVERTMW 445

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
            G+  P  DYN F    S      + +E+ ++++  G  ++ ++   + E
Sbjct: 446 GGVDVPRFDYNTFLYYFSNEDGVSMFEEVGRRLKDVGHVDLGDIFLTYGE 495


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 23/353 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   ++E+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEES 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N ++ G +KIG  
Sbjct: 128 LECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            +  +L  VM+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 DEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ ++M  +   PD +TYN LI  +  +    +A  +  EM   G 
Sbjct: 248 IDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G   V NV+ 
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGY--VPNVVT 418



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 17/300 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             +  +M        V T + L+  L +     +A  LFD+ L +   PN  T+T L+ G
Sbjct: 191 FRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT +I   CK+       L T F  R+RM      +KE        D + Y ALI  
Sbjct: 311 KITYTTLIDGXCKEGD-----LETAFEYRKRM------IKE----NIRXDDVAYTALISG 355

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    +A ++ +EM+  G KP I TY MI+    + G+   G K+  EM R G  P+
Sbjct: 356 LCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPN 415



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 37/216 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+ +++ L +  + +    + +EM + GL+ +  TF   ++          A
Sbjct: 201 GVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLA 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I+  M        + T N L+  L +    K+A  L D++  +   P+  TYT L+ G
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 358 WCRVKNL-----------------------------------MEAGRVWNEMIDKGFKPD 382
            C+  +L                                   ++A ++  EM+  G KP+
Sbjct: 321 XCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           +  + +++    K G      KL + M+  G  PNV
Sbjct: 381 IGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNV 416


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 164/345 (47%), Gaps = 22/345 (6%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +L+EM   G+ ++   +   ++A+   K+  +   + ++M     +  V T   L++ L 
Sbjct: 165 LLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLS 224

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            ++   + + +F+++K +  + ++  Y+ ++  +CR  N+  A  V++E +  G +P+  
Sbjct: 225 AARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEH 284

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA---------- 434
            +  ++ G  KIG+   A  L   M+ +G   N   +  MI  +C++N            
Sbjct: 285 TYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIM 344

Query: 435 ----------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                      Y  L  G     RMD   +LL+ M E+G  P+ ++Y  LI +   +   
Sbjct: 345 EKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDM 404

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            EA R+++EM  +G +P++ TYN++M  Y + G+     +   EM ++G  PD  SY  L
Sbjct: 405 VEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAAL 464

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           + G     +   A +  EEM ++G K  ++ Y    + L++ GRS
Sbjct: 465 VHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRS 509



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 30/386 (7%)

Query: 209 LSHNLVVDVL---ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMV 265
           LS ++VVD      R  HAR+           + G   N+  YNS++    R +  + + 
Sbjct: 144 LSASVVVDGYCKSGRVAHARQ-----LLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 198

Query: 266 SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
            ML+ M  +G+  ++ T+ I ++  +AA++  K  A+FE M        V   + ++   
Sbjct: 199 EMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY 258

Query: 325 GRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
            R+   + A  +FD+ + +   PN  TY  L+ G+C++  +  A  +  +M  +G   + 
Sbjct: 259 CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ 318

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------I 423
           +  N M++G  +      A+++  +M+  G   +V +Y                     I
Sbjct: 319 IVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRI 378

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           MI K  + N   YT LI+   N   M     L +EM   G  P  +TYN ++     +  
Sbjct: 379 MIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGS 438

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
             EA R  KEM + G  P I++Y  ++  +   G  ++  ++++EM +RG  P+  +YT 
Sbjct: 439 IREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTA 498

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGM 569
           LI GL  + RS EA++  + ML  G+
Sbjct: 499 LISGLAKEGRSEEAFQLYDNMLGDGL 524



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 140/313 (44%), Gaps = 30/313 (9%)

Query: 198 MEAVLDEC-GINLSHNL-----VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           +EAV +E    NLS ++     V++   R  + RR +  F    G+  G   N  TY ++
Sbjct: 232 VEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGN--GIEPNEHTYGAL 289

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           ++   +  Q E    ++ +M  +G+ ++   F   ++ +       KA+ I  +M K   
Sbjct: 290 INGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGI 349

Query: 311 KAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  V T N L   L R+    EA+ LL   ++    PN  +YT L+   C   +++EA R
Sbjct: 350 ELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARR 409

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           ++ EM   G +P +V +N+M++G +K G   +A +  + M+ KG  P++ SY  ++   C
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHC 469

Query: 430 --------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
                               K N   YT LI+G     R +  + L   M   G  PD  
Sbjct: 470 VNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDA 529

Query: 470 TYNALIKLMKIQK 482
            Y+AL+  +   K
Sbjct: 530 LYSALVGSLHTDK 542



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 20/264 (7%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           QLL +  +H    N   Y  LL  + R K+      +   M ++G +P V  + I+++GL
Sbjct: 164 QLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 223

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
                 +    +FE MK+K  S +V  Y+ +I  +C+                     N 
Sbjct: 224 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
             Y  LI GF    +M+    L+ +M+ RG   + + +N +I     + M D+A+ I   
Sbjct: 284 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMI 343

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M + G +  ++TYN +     +    +  + +   MI +G  P+  SYT LI    ++  
Sbjct: 344 MEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGD 403

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYN 577
             EA +   EM   G +  ++ YN
Sbjct: 404 MVEARRLFREMAGNGAEPSLVTYN 427



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           +V++ G+C+   +  A ++ +EM   G K + + +N +L+   +        ++ +VM+ 
Sbjct: 147 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 206

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
           +G  P V +YTI               L+ G    R +  V  + +EM+ +    D   Y
Sbjct: 207 EGIEPTVGTYTI---------------LVDGLSAARDITKVEAVFEEMKSKNLSGDVYFY 251

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           +++I           A  ++ E V +G +P  HTY  ++  + + G  E    +  +M  
Sbjct: 252 SSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV 311

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           RG   +   +  +I G   ++   +A +    M + G++  V  YN  A  L RA R   
Sbjct: 312 RGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANR--- 368

Query: 592 LDELAQKMRF 601
           +DE    +R 
Sbjct: 369 MDEAKNLLRI 378


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 162/332 (48%), Gaps = 22/332 (6%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
            G +  + +YN+++  L      +    +  EM   G    E T+ + ++A   +   +  
Sbjct: 771  GVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDM 830

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
            + + + M+   +++   T N ++  L +SK+  EA  L+ KL    F+P   TY  LL G
Sbjct: 831  LKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDG 890

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
              +   + +A  +++EM+D G KP+   +NI+L G    G      +LF+ M  +G +P+
Sbjct: 891  LLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPD 950

Query: 418  VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
            ++SYT++I   C                    + +   Y  LI G G   R++    L  
Sbjct: 951  IKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFN 1010

Query: 458  EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            +ME+ G  P+  TYN+LI  +  +    EA ++Y+E++++G+KP + TYN ++  Y  +G
Sbjct: 1011 DMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSG 1070

Query: 518  NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
            + +     + +MI  GC P+ ++Y  L   L+
Sbjct: 1071 STDNAFASYGQMIVGGCPPNSSTYMQLPNQLL 1102



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 18/276 (6%)

Query: 316  TINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            T N +L+ +G+S +  E  L   K  H   +     TY  ++ G  + K L EA  ++ +
Sbjct: 813  TYNLILDAMGKS-MRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYK 871

Query: 374  MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433
            ++ +GF P    +  +L+GLLK GK  DA  LF+ M   G               CK N 
Sbjct: 872  LMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYG---------------CKPNR 916

Query: 434  AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493
            A+Y  L+ G+      + V +L + M ++G  PD  +Y  LI  +      ++++  +++
Sbjct: 917  AIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQ 976

Query: 494  MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
            +   G +P + TYN+++    ++G  E    ++++M + G  P+  +Y  LI  L  + +
Sbjct: 977  LTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGK 1036

Query: 554  SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            + EA K  EE+L+ G K  V  YN      S +G +
Sbjct: 1037 AAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGST 1072



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 171/449 (38%), Gaps = 92/449 (20%)

Query: 247  TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
            TYN++++ LGR  + + ++ +LEEM       ++ T+   ++      E   A+ +   M
Sbjct: 568  TYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNM 627

Query: 306  NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                    + + N  L  L +     EA  +F ++K    P+ TT   +L  + +   + 
Sbjct: 628  TMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMN 687

Query: 366  EAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            EA     E I   G K D  + + ++EG+LK      +I+  E +       +    + +
Sbjct: 688  EALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPL 747

Query: 425  IWKFCKQNAAV--------------------YTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            I   CK   A+                    Y  LI G  +   +D+   L  EM+  GC
Sbjct: 748  IRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGC 807

Query: 465  PPDGLTYNALIK----------LMKIQK-------------------------MPDEAVR 489
             PD  TYN ++           ++K+QK                         M  EA+ 
Sbjct: 808  DPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMD 867

Query: 490  IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC--------------- 534
            +Y +++  GF PT  TY  ++    + G  E    ++DEM+  GC               
Sbjct: 868  LYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYR 927

Query: 535  --------C------------PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
                    C            PD  SYTVLIG L +  R  ++  Y  ++ E G++  ++
Sbjct: 928  LAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLI 987

Query: 575  DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             YN     L R+GR      L   M  SG
Sbjct: 988  TYNLLIHGLGRSGRLEEAVSLFNDMEKSG 1016



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 148/343 (43%), Gaps = 29/343 (8%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
            +   ++A        +A  +F+ M +   +    + N L+    ++     A  LF+ +
Sbjct: 358 AYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHM 417

Query: 341 K-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             H  TPN  TY + +  + +    ++A + +  M  KG  PDVVA N +L  L K G+ 
Sbjct: 418 NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRL 477

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMI--------------------WKFCKQNAAVYTCL 439
             A ++F  +K+ G  P+  +YT+MI                       C  +      L
Sbjct: 478 GMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSL 537

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I       R +  + +  E++E    P   TYN L+  +  +    E + + +EM  + +
Sbjct: 538 IDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSY 597

Query: 500 KPTIHTYNMIMKSYFQTG--NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
            P + TYN ++    + G  NY +G  +   M  +GC PD +SY   + GL+ +DR  EA
Sbjct: 598 PPNLITYNTVLDCLCKNGEVNYALG--MLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEA 655

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           ++   +M  K + AP  DY      L    ++ +++E    ++
Sbjct: 656 FRIFCQM--KKVLAP--DYTTLCTILPSFVKNGLMNEALHTLK 694



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 171/411 (41%), Gaps = 51/411 (12%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL---GRARQFE-------- 262
           VV +L         A + F     +P   H + + N M+ ++   GR R           
Sbjct: 81  VVHMLRSAAADPAEALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQR 140

Query: 263 --------TMVSMLEEMGEKG--------LLSMETFKIAMNAF---------AAAKERKK 297
                   T +++   +G +G        L  M+   I +N++           +   ++
Sbjct: 141 QIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDRE 200

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+ ++++M        V T + L+   G+  +     LL +   H   PN+ +YT+ +  
Sbjct: 201 AMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVETVVWLLREMEDHGVKPNVYSYTICIRV 260

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             +     EA ++  +M D+G KPDVV + ++++ L   G+ SDA  +F  MKA    P+
Sbjct: 261 LGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPD 320

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  ++ K C  N           G+ R    V ++   M+  G   + + Y A++  
Sbjct: 321 RVTYITLLDK-CGDN-----------GDSRS---VIEIWNAMKADGYNDNVVAYTAVVDA 365

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      DEA  ++ +M + G +P  ++YN ++  + +        ++++ M   G  P+
Sbjct: 366 LCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPN 425

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +Y + I        S +A K  E M  KG+   V+  N     L+++GR
Sbjct: 426 GYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGR 476



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 159/365 (43%), Gaps = 39/365 (10%)

Query: 238  KPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK--- 293
            +PG   +  +++S+M  IL RA   +++     E  E   LS    +I ++ F  +    
Sbjct: 699  QPGSKADRSSFHSLMEGILKRAGMEKSI-----EFAENIALS----RILLDDFFLSPLIR 749

Query: 294  ---ERKKAVAIFELMNKYK-----FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RF 344
               + KKA+   EL+ K++      K G  + N L+  L    L   A+ LF ++K    
Sbjct: 750  HLCKSKKALEAHELVKKFESLGVSLKTG--SYNALICGLVDENLIDVAEGLFSEMKRLGC 807

Query: 345  TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
             P+  TY ++L    +   + +  +V  EM  KG++   V +N ++ GL+K     +A+ 
Sbjct: 808  DPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMD 867

Query: 405  LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            L+  + ++G SP                   Y  L+ G     +++   DL  EM + GC
Sbjct: 868  LYYKLMSEGFSPT---------------PCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGC 912

Query: 465  PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             P+   YN L+   ++    ++   +++ MV  G  P I +Y +++ +    G       
Sbjct: 913  KPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLS 972

Query: 525  VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
             + ++   G  PD  +Y +LI GL    R  EA     +M + G+   +  YN     L 
Sbjct: 973  YFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLG 1032

Query: 585  RAGRS 589
            + G++
Sbjct: 1033 KEGKA 1037



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 31/311 (9%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK------HRFTPNLTTYTVL 354
           +F+LM +   KA V T   +  +LG     + A +    +K      + +T N   Y ++
Sbjct: 134 VFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLV 193

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--DAIKLFEVMKAK 412
             G+ R     EA  V+  M   G  P V  +++++   L  GKR     + L   M+  
Sbjct: 194 KSGYDR-----EAMEVYKVMATDGIVPSVRTYSVLM---LAFGKRDVETVVWLLREMEDH 245

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  PNV SYTI I                  G   R +  Y +L++ME+ GC PD +T  
Sbjct: 246 GVKPNVYSYTICIRVL---------------GQAGRFEEAYKILQKMEDEGCKPDVVTNT 290

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            LI+++       +A  ++ +M  S  KP   TY  ++      G+     ++W+ M   
Sbjct: 291 VLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKAD 350

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G   +  +YT ++  L    R  EA    ++M +KG++     YN   +   +A R    
Sbjct: 351 GYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHA 410

Query: 593 DELAQKMRFSG 603
            EL   M   G
Sbjct: 411 LELFNHMNIHG 421



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 164/422 (38%), Gaps = 59/422 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G      +YNS++S   +A +    + +   M   G   +  T+ + +N +  + E  KA
Sbjct: 386 GIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKA 445

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           +  +ELM        V   N +L +L +S     A+ +F +LK     P+  TYT+++  
Sbjct: 446 IKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKC 505

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF----------- 406
             +  N  EA +V++EMI+    PDV+A N +++ L K G+ ++A K+F           
Sbjct: 506 CSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPT 565

Query: 407 ------------------------EVMKAKGPSPNVRSYTI------------------- 423
                                   E M +    PN+ +Y                     
Sbjct: 566 DCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLY 625

Query: 424 -MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482
            M  K C  + + Y   + G     R+   + +  +M ++   PD  T   ++       
Sbjct: 626 NMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQM-KKVLAPDYTTLCTILPSFVKNG 684

Query: 483 MPDEAVRIYKE-MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
           + +EA+   KE +++ G K    +++ +M+   +    E   +  + +       DD   
Sbjct: 685 LMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFL 744

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           + LI  L    ++ EA++ +++    G+      YN     L       V + L  +M+ 
Sbjct: 745 SPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKR 804

Query: 602 SG 603
            G
Sbjct: 805 LG 806


>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 187/422 (44%), Gaps = 30/422 (7%)

Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
           ++++  L   GI+ S   V +VL+   +    A +FF WAG      H++  +N M+ +L
Sbjct: 67  QDIDNALSSSGIHPSEECVHEVLKLSYNYPSSAIKFFRWAGRLR--KHSAHAWNLMVDLL 124

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           GR + FE M   +  M ++G+LS+ TF     ++  A    +AV  F++M+KY     V 
Sbjct: 125 GRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQSYCMAGRVNEAVMSFDVMDKYDIDKNVV 184

Query: 316 TINCLLENLGRSKLPKEAQLLF------DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
            +N LL  + R +      + F       K + +   +  +Y +LL GW +  N  +A  
Sbjct: 185 AVNSLLSAICREENQTSVGVEFLEKKVTGKDEGKIELDGDSYAILLEGWEKEGNATKAKT 244

Query: 370 VWNEMIDK-GFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWK 427
            + EM+ + G+  D V A++  L  LL+  +  + +   +VMK     P ++ +T  +  
Sbjct: 245 TFGEMVIRVGWSQDNVAAYDAFLMTLLRALQFDEVVGFLKVMKDHDCFPGLKFFTNALDV 304

Query: 428 FCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
             K+N A                    +Y  +I    N   +D  + LL EM   G  PD
Sbjct: 305 LVKRNDAAHAIPLWDVMVVSGLLPNLIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPD 364

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            LTYN + + +   K   E  R + EM+++ + PT     + ++  F   + +   ++W 
Sbjct: 365 SLTYNMIFECLVKNKKVRETERFFAEMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWS 424

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            M+       D S  +++ GL    R  E  ++ EEML+K +       NK      +  
Sbjct: 425 YMVETRVRVLDVSANMVLIGLCKLKRLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKES 484

Query: 588 RS 589
           RS
Sbjct: 485 RS 486


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 156/348 (44%), Gaps = 37/348 (10%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+  YN+++  + + +       +  EM  KG+  ++ T+   ++ F    + K A+ +F
Sbjct: 194 NAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLF 253

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
             +     K    T N L++   + +  KE + +F  + K    P++ TY  L+ G+C V
Sbjct: 254 NKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLV 313

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K +  A  ++N M   G  PD+ ++NI++ G  KI K   A+ LF  M  K   PNV   
Sbjct: 314 KEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNV--- 370

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                         Y  LI G     R+     L+ +M +RG PP+ LTYN++I  +   
Sbjct: 371 ------------VTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKT 418

Query: 482 KMPDEAVRIYKEMVRSGFKP--------------------TIHTYNMIMKSYFQTGNYEM 521
              D+A+ +  +    G +P                    T++TYN+++  + + G ++ 
Sbjct: 419 HQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDE 478

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +  +M    C P+  +Y + I  L+  + + +A K   EM+ +G+
Sbjct: 479 ALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N   Y  ++ G C+ K++ +A  +++EM+ KG  P+VV ++ ++ G   +GK  DAI LF
Sbjct: 194 NAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLF 253

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             +  +   P+  ++ I++  FCK                R+M     +   M ++G  P
Sbjct: 254 NKIILENIKPDGYTFNILVDGFCKD---------------RKMKEGKTVFAMMMKQGIIP 298

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D +TYN+L+    + K  + A  I+  M + G  P I +YN+++  + +    +    ++
Sbjct: 299 DVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLF 358

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           +EM  +   P+  +Y  LI GL    R   A + +++M ++G+   +L YN
Sbjct: 359 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYN 409



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 148/343 (43%), Gaps = 29/343 (8%)

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTP 346
            F +  +   AV++F  + +          N +L +L +SK       L  K++ R   P
Sbjct: 60  TFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKP 119

Query: 347 NLTTYTVLLGGWCRVK----NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           NL    +L+  +C++      + +A    ++++  GF  D V++  ++ GL K+G+   A
Sbjct: 120 NLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 179

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITG 442
           + L + +  K    N   Y  +I+  CK                     N   Y+ LI+G
Sbjct: 180 LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 239

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKP 501
           F    ++    DL  ++      PDG T+N L+    K +KM  E   ++  M++ G  P
Sbjct: 240 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKM-KEGKTVFAMMMKQGIIP 298

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TYN +M  Y         + +++ M + G  PD  SY +LI G     +  +A    
Sbjct: 299 DVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLF 358

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMRFSG 603
            EM  K +   V+ YN     LS++GR SY L +L  +M   G
Sbjct: 359 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYAL-QLVDQMHDRG 400


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 192/439 (43%), Gaps = 38/439 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E V+   G    H++V D+L+                   PG   + R Y +++  L R
Sbjct: 147 LEMVVRALGREGQHDVVCDLLDEMPL--------------PPGSRLDVRAYTTVLHALSR 192

Query: 258 ARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFA-AAKERKKAVAIFELMNKYKFKAGVD 315
           A ++E  + +  E+  +G++ ++ T+ + ++ +    +   + VA+ E M     +    
Sbjct: 193 AGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDF 252

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + ++   GR  L  +A   F+ LK R   P + TY  LL  + +  N  EA RV  EM
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 312

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----- 429
            D G +PD V +N +     + G   +A K  + M +KG  PN  +Y  ++  +      
Sbjct: 313 EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRV 372

Query: 430 ----------KQNAAV-----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                     K+N  V     Y  +    G + R   + ++L+EM   GC P+ +T+N +
Sbjct: 373 DEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTM 432

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           + +   + M D   R+   M   G + +  TYN ++ +Y + G+     K++DEMI  G 
Sbjct: 433 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGF 492

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P   +Y  L+  L  Q     A   + +ML+ G K     Y+      ++ G +  ++ 
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIES 552

Query: 595 LAQKMRFSGKFEVSNVLAR 613
           + +K  + G    S V+ R
Sbjct: 553 I-EKEVYVGTIFPSWVILR 570



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 164/399 (41%), Gaps = 87/399 (21%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-------------------GEKGL-- 276
           K G+  N  TYN +  +LG+  +F  M+ MLEEM                   G++G+  
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 277 ---------------LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
                          LS +T+   ++A+     R  A  +++ M    F   + T N LL
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL-----GG------------------ 357
             L R      AQ +  K LK+ F PN  +Y++LL     GG                  
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 358 --WCRVKNLMEAG----------RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
             W  ++ L+ A           + + E+  +G+KPD+V  N ML    K G  S A ++
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F+ +K  G SP++ +Y  ++  + K N +                    +LK+++     
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEA---------------EKILKQLKSSQVK 668

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++YN +I     Q +  EA RI  EM+  G  P + TY+ ++  Y     +   R+V
Sbjct: 669 PDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREV 728

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            + MI     P + +Y  ++       R  EA ++L E+
Sbjct: 729 VNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI 767



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 157/372 (42%), Gaps = 26/372 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSMETFKIA 285
           A     WA D+   A ++     ++  LGR  Q + +  +L+EM       L +  +   
Sbjct: 129 ALALLRWASDEG--AADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTV 186

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR--SKLPKEAQLLFDKLKHR 343
           ++A + A   ++A+ +F  + +      + T N +L+  GR     P+   LL +     
Sbjct: 187 LHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAG 246

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P+  T + ++    R   L +A   + ++  +G  P VV +N +L+   K G  ++A+
Sbjct: 247 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 306

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++ + M+  G               C+ +A  Y  L   +      +     L  M  +G
Sbjct: 307 RVLKEMEDSG---------------CQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKG 351

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+  TYN ++         DEA+ ++  M ++G+ P ++TYN+I     +   +    
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY--KYLEEMLEKGMKAPVLDYNKFAA 581
           ++ +EM R GC P+  ++  ++   +   R  E Y  + L  M   G++     YN   +
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLA--VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLIS 469

Query: 582 DLSRAG-RSYVL 592
              R G R+Y  
Sbjct: 470 AYGRCGSRTYAF 481


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 17/350 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  HN  T N +++   R  Q    +S L +M + G   S+ TF   +N F        A
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDA 170

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + +F+ M    +K  V   N +++ L +SK    A  L +++ K    P++ TY  L+ G
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ + M  +   PDV   N +++  +K G+ S+A + +E M  +   P+
Sbjct: 231 LCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPD 290

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+++I+  C  +               R+D   ++   M  +GC PD +TY+ LI  
Sbjct: 291 IVTYSLLIYGLCMYS---------------RLDEAEEMFGFMVSKGCFPDVVTYSILING 335

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               K  +  ++++ EM + G      TY ++++ Y + G   +  +++  M+  G  P+
Sbjct: 336 YCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPN 395

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
             +Y VL+ GL    +  +A   L +M + GM A ++ YN     + +AG
Sbjct: 396 IITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAG 445



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 16/329 (4%)

Query: 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQ 334
           L S+  F   ++A +  K+    + ++E M        + T N LL    R S+L     
Sbjct: 78  LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            L   +K    P++ T+  LL G+CR   + +A  ++++M+  G+KP+VV +N +++GL 
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
           K  +  +A+ L   M+  G  P+V                 Y  LI+G  +  R      
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDV---------------VTYNSLISGLCSSGRWSDATR 242

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           ++  M +R   PD  T+NALI     +    EA   Y+EM+R    P I TY++++    
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLC 302

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
                +   +++  M+ +GC PD  +Y++LI G     +     K   EM ++G+    +
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            Y        RAG+  V +E+ ++M F G
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRMVFCG 391



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 21/352 (5%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
           P  A  SR    ++S + + ++++ ++ + E+M   G+  ++ T  I +N F    +   
Sbjct: 79  PSIADFSR----LLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSL 134

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A++    M K   +  + T   LL    R     +A  +FD++    + PN+  Y  ++ 
Sbjct: 135 ALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIID 194

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+ K +  A  + N M   G  PDVV +N ++ GL   G+ SDA ++   M  +   P
Sbjct: 195 GLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYP 254

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +V ++          NA +  C+  G     R+    +  +EM  R   PD +TY+ LI 
Sbjct: 255 DVFTF----------NALIDACVKEG-----RVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            + +    DEA  ++  MV  G  P + TY++++  Y ++   E G K++ EM +RG   
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +  +YT+LI G     +   A +    M+  G+   ++ YN     L   G+
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 145/321 (45%), Gaps = 22/321 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  N   YN+++  L +++Q +  + +L  M + G+   + T+   ++   ++     A
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M K +    V T N L++   +     EA+  ++++  R   P++ TY++L+ G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    L EA  ++  M+ KG  PDVV ++I++ G  K  K    +KLF  M  +G   N
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YTI+I  +C+                     N   Y  L+ G  +  +++    +L 
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILA 420

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           +M++ G   D +TYN +I+ M       +A  IY  +   G  P I TY  +M   ++ G
Sbjct: 421 DMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480

Query: 518 NYEMGRKVWDEMIRRGCCPDD 538
                  ++ +M   G  P++
Sbjct: 481 LRREADALFRKMKEDGILPNE 501



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 18/274 (6%)

Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
           KL     L F  ++ R  P++  ++ LL    ++K       +W +M   G   ++   N
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
           I+L    +  + S A+     M   G  P++ ++  ++  FC+ +              R
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGD--------------R 166

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
             D +Y +  +M   G  P+ + YN +I  +   K  D A+ +   M + G  P + TYN
Sbjct: 167 VYDALY-MFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYN 225

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
            ++     +G +    ++   M +R   PD  ++  LI   + + R  EA ++ EEM+ +
Sbjct: 226 SLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR 285

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
            +   ++ Y+     L    R   LDE  +   F
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSR---LDEAEEMFGF 316


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 179/411 (43%), Gaps = 25/411 (6%)

Query: 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSI 254
           DR M   +  C   L   L  D +      R     F   AG  P    +  TY++++  
Sbjct: 202 DRGMAPSIRCCNALLKDLLRADAMALLWKVRE----FMVGAGISP----DVYTYSTLIEA 253

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
             + R+F+T   +L EM E+G  L+  T+ + +     +   ++A    + M  Y     
Sbjct: 254 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 313

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
             T   L+  L +S+   EA+ L D++      PN+  Y  L+ G+ R  N  EA ++  
Sbjct: 314 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 373

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM+  G +P+ + ++ ++ GL K+G+   A  L + M      P+  +Y ++I       
Sbjct: 374 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH---- 429

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                     F +  + D  + LL EME  G  P+  TY+ +I  +     P++A  + +
Sbjct: 430 ----------FRHHSKKD-AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 478

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
           EM   G KP    Y  ++  Y + GN  +  +++D+M +    PD   Y  LI GL    
Sbjct: 479 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 538

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           R  E+ KY  +M E+G+      Y+       + G     ++L Q+M  +G
Sbjct: 539 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTG 589



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 164/363 (45%), Gaps = 31/363 (8%)

Query: 263 TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322
            + S+   + + G  S     + ++ +  +   + A  +  +M        +   N LL+
Sbjct: 158 VLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLK 217

Query: 323 NLGRSKLPKEAQLLFDKLKH-----RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           +L R+    +A  L  K++        +P++ TY+ L+  +C+V+    A +V  EM ++
Sbjct: 218 DLLRA----DAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRER 273

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------ 431
           G   + V +N+++ GL + G   +A    + M+  G  P+  +Y  +I   CK       
Sbjct: 274 GCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEA 333

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                         N  VY  LI GF      D  + ++KEM   G  P+ +TY+ L++ 
Sbjct: 334 KALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRG 393

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L K+ +M D A  + K+MVR   +P   TYN+I++ +F+  + +   ++  EM   G  P
Sbjct: 394 LCKMGQM-DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISP 452

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +  +Y+++I GL       +A   LEEM  KG+K     Y    +   R G   +  E+ 
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 512

Query: 597 QKM 599
            KM
Sbjct: 513 DKM 515



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 178/404 (44%), Gaps = 21/404 (5%)

Query: 209 LSHNLVVDVLERFRH-ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           +++NL+++    FRH +++ AFR      +  G + N  TY+ M+  L ++ + E    +
Sbjct: 420 ITYNLIIE--GHFRHHSKKDAFRLLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 268 LEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326
           LEEM  KGL  +   +   ++ +        A  IF+ M K      +   N L+  L +
Sbjct: 477 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 536

Query: 327 SKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
               +E+   F +++ R   PN  TY+ L+ G+ +  +L  A ++   M+D G KP+ V 
Sbjct: 537 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 596

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +  +LE   K          F+ M  +G   + R Y I+I              ++  GN
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN------------LSSSGN 644

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
              M+  + +L  +E+ G  PD   Y++LI  +      ++A  I  EM + G  P I  
Sbjct: 645 ---MEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 701

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++    ++G+    R V++ ++ +G  P+  +YT LI G         A+    EML
Sbjct: 702 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 761

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609
             G+      Y+      S AG       L ++M   G   +S+
Sbjct: 762 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS 805



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 152/351 (43%), Gaps = 38/351 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           G   ++R Y  ++  L  +   E    +L  + + G +  +  +   ++      +R+KA
Sbjct: 624 GVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKA 683

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             I + M+K      +   N L++ L +S     A+ +F+  L     PN  TYT L+ G
Sbjct: 684 FGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 743

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+V ++  A  ++NEM+  G  PD   ++++  G    G    A+ L E M  +G + +
Sbjct: 744 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-S 802

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-- 475
           + S+  ++  FCK               R +M     LL  +  RG  P+ LT   +I  
Sbjct: 803 ISSFNNLVDGFCK---------------RGKMQETLKLLHVIMGRGLVPNALTIENIISG 847

Query: 476 -----KLMKI--------QKMPDEAVR----IYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
                KL ++        QK  + A R    ++ +M+  G  P     +MI + + + GN
Sbjct: 848 LSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMI-RDHCKEGN 906

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
            +    + D ++ +      +SY  ++  L  + +  EA   L+EM ++G+
Sbjct: 907 LDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGI 957


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 24/365 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN++++   RA + ++   +L+ M  KG    + T+ I + +  +      A+     + 
Sbjct: 129 YNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLL 188

Query: 307 KYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   K  V T   L+E  L +  + +  +LL + L+    P++ TY  ++ G CR   + 
Sbjct: 189 KENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVD 248

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A ++ + +  KG+ PDV+ +NI+L GLL  GK     +L   M A+G   NV +Y+++I
Sbjct: 249 RAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLI 308

Query: 426 WKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                    K +   Y  LI       R+D+  ++L  M   GC 
Sbjct: 309 SSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCV 368

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + YN ++  +  QK  DEA+ I++++   G  P   +YN +  + + TG+      +
Sbjct: 369 PDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGM 428

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL--EEMLEKGMKAPVLDYNKFAADL 583
             EM+ +G  PD  +Y  LI  L       EA + L   EM     K  V+ YN     L
Sbjct: 429 ILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGL 488

Query: 584 SRAGR 588
            +  R
Sbjct: 489 CKVSR 493



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 136/291 (46%), Gaps = 17/291 (5%)

Query: 315 DTINC--LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           D + C  L+  L  SK   +A  +   L++   P+L  Y  ++ G+CR   +  A +V +
Sbjct: 91  DVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLD 150

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
            M +KGF PD+V +NI++  L   G    A++    +  +   P V +YTI+I     Q 
Sbjct: 151 RMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQG 210

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
                           +D    LL EM E    PD  TYN++I+ M  +   D A +I  
Sbjct: 211 G---------------IDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIIS 255

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
            +   G+ P + TYN++++     G +E G ++  +M+ RGC  +  +Y+VLI  +    
Sbjct: 256 SISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDG 315

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +  E    L++M +KG+K     Y+   A L + GR  +  E+   M   G
Sbjct: 316 KVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDG 366



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 148/324 (45%), Gaps = 22/324 (6%)

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-F 344
           ++    +K   KA+ +  ++  +     +   N ++    R+     A  + D++K++ F
Sbjct: 99  IHGLFTSKTIDKAIQVMHILENHGHPDLI-AYNAIITGFCRANRIDSAYQVLDRMKNKGF 157

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
           +P++ TY +L+G  C    L  A    N+++ +  KP VV + I++E  L  G   +A+K
Sbjct: 158 SPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMK 217

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           L + M      P++ +Y  +I   C++                    +   Y  L+ G  
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLL 277

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
           N+ + +  Y+L+ +M  RGC  + +TY+ LI  +      +E V + K+M + G KP  +
Sbjct: 278 NQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGY 337

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            Y+ ++ +  + G  ++  +V D MI  GC PD  +Y  ++  L  Q R+ EA    E++
Sbjct: 338 CYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 397

Query: 565 LEKGMKAPVLDYNKFAADLSRAGR 588
            E G       YN   + L   G 
Sbjct: 398 GEVGCSPNASSYNSMFSALWSTGH 421



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 24/306 (7%)

Query: 267 MLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL- 324
           +L+EM E  L   M T+   +          +A  I   ++   +   V T N LL  L 
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLL 277

Query: 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            + K     +L+ D +      N+ TY+VL+   CR   + E   +  +M  KG KPD  
Sbjct: 278 NQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGY 337

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------- 431
            ++ ++  L K G+   AI++ +VM + G  P++ +Y  ++   CKQ             
Sbjct: 338 CYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 397

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  NA+ Y  + +   +         ++ EM ++G  PDG+TYN+LI  +    M 
Sbjct: 398 GEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMV 457

Query: 485 DEAVRIY--KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542
           DEA+ +    EM  S  KP++ +YN+++    +        +V   M+ +GC P++ +YT
Sbjct: 458 DEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYT 517

Query: 543 VLIGGL 548
            LI G+
Sbjct: 518 FLIEGI 523



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +   Y+ +++ L +  + +  + +L+ M   G +  +  +   +      K   
Sbjct: 329 KKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRAD 388

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLL 355
           +A++IFE + +        + N +   L  +     A  ++ + L     P+  TY  L+
Sbjct: 389 EALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLI 448

Query: 356 GGWCRVKNLMEAGR--VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
              CR   + EA    V  EM     KP VV++NI+L GL K+ + SDAI++   M  KG
Sbjct: 449 SCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKG 508

Query: 414 PSPNVRSYTIMI 425
             PN  +YT +I
Sbjct: 509 CRPNETTYTFLI 520



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 24/229 (10%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY+ ++S + R  + E  V +L++M +KGL      +   + A         A
Sbjct: 296 GCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLA 355

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + ++M        +   N +L  L + K   EA  +F+KL     +PN ++Y  +   
Sbjct: 356 IEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSA 415

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-- 415
                + + A  +  EM+DKG  PD + +N ++  L + G   +AI+L   M+ +     
Sbjct: 416 LWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECK 475

Query: 416 PNVRSYTI--------------------MIWKFCKQNAAVYTCLITGFG 444
           P+V SY I                    M+ K C+ N   YT LI G G
Sbjct: 476 PSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIG 524



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA-IFELM 305
           YN++++ L + ++ +  +S+ E++GE G   +  ++    +A  +   + +A+  I E++
Sbjct: 374 YNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEML 433

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKL--KHRFTPNLTTYTVLLGGWCRVK 362
           +K     G+ T N L+  L R  +  EA +LL D         P++ +Y ++L G C+V 
Sbjct: 434 DKGVDPDGI-TYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVS 492

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
            + +A  V   M+DKG +P+   +  ++EG+   G  +DA
Sbjct: 493 RVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDA 532


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 151/339 (44%), Gaps = 20/339 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  N   YN+M+  L + R  +  V +  +M E G    E T+ + +N   A  +  K 
Sbjct: 288 GFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKL 347

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGG 357
             I E+  KY  K         L  LG S    EA  LF  + +     +   Y  +L  
Sbjct: 348 DNIVEMSKKYMNKQIYAYFVRTLSKLGHSS---EAHRLFCNMWNVHDKGDKDAYMSMLES 404

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    + EA  + N   +K    D + +N +   L ++ + S    L+E MK  GP P+
Sbjct: 405 LCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPD 464

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y I               LI+ +G   R+D    + +E+E   C PD ++YN+LI  
Sbjct: 465 IFTYNI---------------LISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINC 509

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      DEA   +KEM   G  P + TY+ +++ + +T   EM   ++DEMI  GC P+
Sbjct: 510 LGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPN 569

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             +Y +L+  L    R+ EA     ++ ++G+    + Y
Sbjct: 570 LVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 608



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 178/398 (44%), Gaps = 49/398 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G++ +   +N ++  L + ++ +    + E+M  +       T+ I +     A +  ++
Sbjct: 218 GYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDES 277

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL-- 355
           +A+F+ M +  F   +   N ++E L + ++  +A LLF K+ ++   PN  TY+VLL  
Sbjct: 278 LALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNV 337

Query: 356 ----GGWCRVKNLME--------------------------AGRVWNEMIDKGFKPDVVA 385
               G   ++ N++E                          A R++  M +   K D  A
Sbjct: 338 LVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDA 397

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           +  MLE L   GK ++AI L      K     + + TIM           Y  + T  G 
Sbjct: 398 YMSMLESLCSSGKIAEAIDLLNRFHEKC----ITTDTIM-----------YNTVFTALGR 442

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            +++  ++DL ++M++ G PPD  TYN LI         D AV+I++E+  S  +P + +
Sbjct: 443 LKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVIS 502

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++    + G+ +     + EM  +G  PD  +Y+ LI      D+   A    +EM+
Sbjct: 503 YNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMI 562

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +G    ++ YN     L R+GR+    +L  K++  G
Sbjct: 563 AEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQG 600



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 120/270 (44%), Gaps = 29/270 (10%)

Query: 215 VDVLERFRHARRPAFRFFC--WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272
           V  L +  H+   A R FC  W     G   +   Y SM+  L  + +    + +L    
Sbjct: 367 VRTLSKLGHSSE-AHRLFCNMWNVHDKG---DKDAYMSMLESLCSSGKIAEAIDLLNRFH 422

Query: 273 EKGLLSMETFKIAMNAFAAAKERKKAVA----IFELMNKYKFKAGVDTINCLLENLGRSK 328
           EK    + T  I  N    A  R K V+    ++E M +      + T N L+ + GR+ 
Sbjct: 423 EK---CITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAG 479

Query: 329 LPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
               A  +F++L++    P++ +Y  L+    +  ++ EA   + EM +KG  PDVV ++
Sbjct: 480 RVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYS 539

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
            ++E   K  K   A  LF+ M A+G SPN+ +Y I++            CL        
Sbjct: 540 TLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILL-----------DCL----ERSG 584

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           R     DL  +++++G  PD +TY  L +L
Sbjct: 585 RTAEAVDLYAKLKQQGLTPDSITYAVLERL 614



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 98/365 (26%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR---QFETMVSMLEEMGEKGLLSMETFKI 284
           AF+FF +    P   ++   YN +   L R+    +FE   S+L++M ++G+        
Sbjct: 107 AFKFFHFC---PSLKNDPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEKRGV-------- 155

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344
                                     K  + T+N L+   G   L +   L+  K   RF
Sbjct: 156 --------------------------KGSISTVNILIGFFG--DLDRCVGLV-KKWGLRF 186

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
             N  +Y  LL G+ R+++  +A  V+ +M+  G+  D+ A N+                
Sbjct: 187 --NAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNM---------------- 228

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
                                             L+      +++D  Y + ++M+ R C
Sbjct: 229 ----------------------------------LLDALAKDQKVDKAYKVFEDMKRRHC 254

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TY  +I++       DE++ +++ M+  GF   +  YN ++++  +    +    
Sbjct: 255 EPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVL 314

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           ++ +M+  GC P++ +Y+VL+  L+++ +  +    + EM +K M   +  Y  F   LS
Sbjct: 315 LFSKMVENGCQPNEFTYSVLLNVLVAEGQLNK-LDNIVEMSKKYMNKQIYAY--FVRTLS 371

Query: 585 RAGRS 589
           + G S
Sbjct: 372 KLGHS 376


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 192/439 (43%), Gaps = 38/439 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E V+   G    H++V D+L+                   PG   + R Y +++  L R
Sbjct: 56  LEMVVRALGREGQHDVVCDLLDEMPL--------------PPGSRLDVRAYTTVLHALSR 101

Query: 258 ARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFA-AAKERKKAVAIFELMNKYKFKAGVD 315
           A ++E  + +  E+  +G++ ++ T+ + ++ +    +   + VA+ E M     +    
Sbjct: 102 AGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDF 161

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + ++   GR  L  +A   F+ LK R   P + TY  LL  + +  N  EA RV  EM
Sbjct: 162 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 221

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----- 429
            D G +PD V +N +     + G   +A K  + M +KG  PN  +Y  ++  +      
Sbjct: 222 EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRV 281

Query: 430 ----------KQNAAV-----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                     K+N  V     Y  +    G + R   + ++L+EM   GC P+ +T+N +
Sbjct: 282 DEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTM 341

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           + +   + M D   R+   M   G + +  TYN ++ +Y + G+     K++DEMI  G 
Sbjct: 342 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGF 401

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P   +Y  L+  L  Q     A   + +ML+ G K     Y+      ++ G +  ++ 
Sbjct: 402 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIES 461

Query: 595 LAQKMRFSGKFEVSNVLAR 613
           + +K  + G    S V+ R
Sbjct: 462 I-EKEVYVGTIFPSWVILR 479



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 164/399 (41%), Gaps = 87/399 (21%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-------------------GEKGL-- 276
           K G+  N  TYN +  +LG+  +F  M+ MLEEM                   G++G+  
Sbjct: 293 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 352

Query: 277 ---------------LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
                          LS +T+   ++A+     R  A  +++ M    F   + T N LL
Sbjct: 353 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 412

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL-----GG------------------ 357
             L R      AQ +  K LK+ F PN  +Y++LL     GG                  
Sbjct: 413 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 472

Query: 358 --WCRVKNLMEAG----------RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
             W  ++ L+ A           + + E+  +G+KPD+V  N ML    K G  S A ++
Sbjct: 473 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 532

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F+ +K  G SP++ +Y  ++  + K N +                    +LK+++     
Sbjct: 533 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEA---------------EKILKQLKSSQVK 577

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++YN +I     Q +  EA RI  EM+  G  P + TY+ ++  Y     +   R+V
Sbjct: 578 PDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREV 637

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            + MI     P + +Y  ++       R  EA ++L E+
Sbjct: 638 VNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI 676



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 157/372 (42%), Gaps = 26/372 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSMETFKIA 285
           A     WA D+   A ++     ++  LGR  Q + +  +L+EM       L +  +   
Sbjct: 38  ALALLRWASDEG--AADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTV 95

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR--SKLPKEAQLLFDKLKHR 343
           ++A + A   ++A+ +F  + +      + T N +L+  GR     P+   LL +     
Sbjct: 96  LHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAG 155

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P+  T + ++    R   L +A   + ++  +G  P VV +N +L+   K G  ++A+
Sbjct: 156 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 215

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++ + M+  G               C+ +A  Y  L   +      +     L  M  +G
Sbjct: 216 RVLKEMEDSG---------------CQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKG 260

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+  TYN ++         DEA+ ++  M ++G+ P ++TYN+I     +   +    
Sbjct: 261 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 320

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY--KYLEEMLEKGMKAPVLDYNKFAA 581
           ++ +EM R GC P+  ++  ++   +   R  E Y  + L  M   G++     YN   +
Sbjct: 321 EMLEEMSRSGCTPNRVTWNTMLA--VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLIS 378

Query: 582 DLSRAG-RSYVL 592
              R G R+Y  
Sbjct: 379 AYGRCGSRTYAF 390


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 192/439 (43%), Gaps = 38/439 (8%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +E V+   G    H++V D+L+                   PG   + R Y +++  L R
Sbjct: 147 LEMVVRALGREGQHDVVCDLLDEMPL--------------PPGSRLDVRAYTTVLHALSR 192

Query: 258 ARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFA-AAKERKKAVAIFELMNKYKFKAGVD 315
           A ++E  + +  E+  +G++ ++ T+ + ++ +    +   + VA+ E M     +    
Sbjct: 193 AGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDF 252

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T + ++   GR  L  +A   F+ LK R   P + TY  LL  + +  N  EA RV  EM
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 312

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC----- 429
            D G +PD V +N +     + G   +A K  + M +KG  PN  +Y  ++  +      
Sbjct: 313 EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRV 372

Query: 430 ----------KQNAAV-----YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                     K+N  V     Y  +    G + R   + ++L+EM   GC P+ +T+N +
Sbjct: 373 DEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTM 432

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           + +   + M D   R+   M   G + +  TYN ++ +Y + G+     K++DEMI  G 
Sbjct: 433 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGF 492

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P   +Y  L+  L  Q     A   + +ML+ G K     Y+      ++ G +  ++ 
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIES 552

Query: 595 LAQKMRFSGKFEVSNVLAR 613
           + +K  + G    S V+ R
Sbjct: 553 I-EKEVYVGTIFPSWVILR 570



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 164/399 (41%), Gaps = 87/399 (21%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-------------------GEKGL-- 276
           K G+  N  TYN +  +LG+  +F  M+ MLEEM                   G++G+  
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 277 ---------------LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
                          LS +T+   ++A+     R  A  +++ M    F   + T N LL
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 322 ENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLL-----GG------------------ 357
             L R      AQ +  K LK+ F PN  +Y++LL     GG                  
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 358 --WCRVKNLMEAG----------RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
             W  ++ L+ A           + + E+  +G+KPD+V  N ML    K G  S A ++
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F+ +K  G SP++ +Y  ++  + K N +                    +LK+++     
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEA---------------EKILKQLKSSQVK 668

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD ++YN +I     Q +  EA RI  EM+  G  P + TY+ ++  Y     +   R+V
Sbjct: 669 PDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREV 728

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
            + MI     P + +Y  ++       R  EA ++L E+
Sbjct: 729 VNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI 767



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 157/372 (42%), Gaps = 26/372 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG--EKGLLSMETFKIA 285
           A     WA D+   A ++     ++  LGR  Q + +  +L+EM       L +  +   
Sbjct: 129 ALALLRWASDEG--AADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTV 186

Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR--SKLPKEAQLLFDKLKHR 343
           ++A + A   ++A+ +F  + +      + T N +L+  GR     P+   LL +     
Sbjct: 187 LHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAG 246

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P+  T + ++    R   L +A   + ++  +G  P VV +N +L+   K G  ++A+
Sbjct: 247 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 306

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++ + M+  G               C+ +A  Y  L   +      +     L  M  +G
Sbjct: 307 RVLKEMEDSG---------------CQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKG 351

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+  TYN ++         DEA+ ++  M ++G+ P ++TYN+I     +   +    
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY--KYLEEMLEKGMKAPVLDYNKFAA 581
           ++ +EM R GC P+  ++  ++   +   R  E Y  + L  M   G++     YN   +
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLA--VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLIS 469

Query: 582 DLSRAG-RSYVL 592
              R G R+Y  
Sbjct: 470 AYGRCGSRTYAF 481


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 196/463 (42%), Gaps = 75/463 (16%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF------- 261
           L+  L+   L R R     A   F  A  +P    +++    ++ IL RAR+F       
Sbjct: 68  LTPALLQAALRRVRLDPDAALHLFRLAPSRPSLVSHAQ----LLHILARARRFHDARALL 123

Query: 262 -------ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
                  E +   L E+      S  +F + + A A A +   A+ +F+ M K   +  +
Sbjct: 124 SSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSL 183

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            + N LL  L +S  P  A +++ +++     P+  T  ++   +CR   + +A     E
Sbjct: 184 RSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEE 243

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI---------- 423
           M   G + ++VA++ +++    +G   DA ++ E ++ KG SPNV +YT+          
Sbjct: 244 MEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGR 303

Query: 424 --------------------------MIWKFCKQ--------------------NAAVYT 437
                                     MI  +C++                    N  VY 
Sbjct: 304 MEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYN 363

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            +I G     RM+ V  +L+EME+ G  PD  +YN LI     +    +A  + + MVR+
Sbjct: 364 TMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRN 423

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G   T  TYN ++K +      +   ++W  M++RG  P++ S + L+ GL    ++ +A
Sbjct: 424 GLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQA 483

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
               +E L +G+   V+ +N     L + GR    +EL  +M+
Sbjct: 484 LNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMK 526



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 16/222 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N ++  L +S    +A+ LF+ L++ RF P+  TY+ L+ G     ++ EA  + + M+ 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
            G  P+++ +N ++ GL K GK S A+ LF  +++KG SPN  +Y  +I ++CK+     
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTE 823

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                           + L ++M E G  P  +TY+ LI  +  Q   +EA+++  +M+ 
Sbjct: 824 A---------------FKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIE 868

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
           +   P   TY  ++  Y ++GN E   K++DEM  RG  P +
Sbjct: 869 NNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTN 910



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 157/363 (43%), Gaps = 17/363 (4%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G A N  T+N++++ L   GR  + E ++  ++E+  +      T++   + +    +  
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKEL--RCPPDSLTYRTLFDGYCKLGQLG 551

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +   M    F   V+  N  +     +K   +   +  ++  R  +PNL TY  L+
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GWC+  NL EA  ++ EM++ G  P+V   + ++    K GK  +A  + + +      
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 416 PNVRSYTIMIWKFCK-----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           P     TI I K                  ++  +I G     R+     L + +  +  
Sbjct: 672 PGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRF 731

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TY++LI         DEA  +   M+ +G  P I TYN ++    ++G       
Sbjct: 732 LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVN 791

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +++++  +G  P+  +Y  LI     + ++ EA+K  ++M+E+G++  V+ Y+     L 
Sbjct: 792 LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLC 851

Query: 585 RAG 587
             G
Sbjct: 852 TQG 854



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 157/371 (42%), Gaps = 26/371 (7%)

Query: 256 GRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           GR  Q    V  +EEM   GL +++  +   M+ +      + A  I E + +      V
Sbjct: 232 GRVAQ---AVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNV 288

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
            T   L++   +    +EA+ +  ++K       +   Y +++ G+C+   + +A RV N
Sbjct: 289 VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRN 348

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM D G   ++  +N M+ GL K+G+  +  K+ + M+  G  P+  SY  +I  +C++ 
Sbjct: 349 EMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREG 408

Query: 433 AA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           +                      Y  L+ GF +   +D    L   M +RG  P+ ++ +
Sbjct: 409 SMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCS 468

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+  +      ++A+ ++KE +  G    + T+N ++    + G      ++ D M   
Sbjct: 469 TLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKEL 528

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
            C PD  +Y  L  G     + G A   + +M   G    V  +N F      A + + +
Sbjct: 529 RCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKV 588

Query: 593 DELAQKMRFSG 603
           +++  +M   G
Sbjct: 589 NDIHSEMSARG 599



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 50/361 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N   YN+M++ L +  + E +  +L+EM + G+   + ++   ++ +      +KA
Sbjct: 354 GIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKA 413

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             +  +M +    A   T                                  Y  LL G+
Sbjct: 414 FEMCRMMVRNGLAATTLT----------------------------------YNTLLKGF 439

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C +  + +A R+W  M+ +G  P+ ++ + +L+GL K GK   A+ L++   A+G + NV
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNV 499

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            ++  +I   CK                 RM    +LL  M+E  CPPD LTY  L    
Sbjct: 500 ITFNTVINGLCKIG---------------RMAEAEELLDRMKELRCPPDSLTYRTLFDGY 544

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                   A  +  +M   GF P++  +N  +  +F    +     +  EM  RG  P+ 
Sbjct: 545 CKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNL 604

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y  LI G   +    EA     EM+  GM   V   +   +   + G+    + + QK
Sbjct: 605 VTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQK 664

Query: 599 M 599
           +
Sbjct: 665 L 665



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 157/358 (43%), Gaps = 43/358 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GFA +   +NS ++    A+Q+  +  +  EM  +GL  ++ T+   +  +       +A
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEA 623

Query: 299 VAIF----------------ELMNKYKFKAGVDTINCLLENL-GRSKLP--KEAQLLFDK 339
             ++                 LM+ +  +  VD  N +L+ L     +P    + +  DK
Sbjct: 624 CNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDK 683

Query: 340 LKHRF------TPNLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
           + H         P+     + V++ G C+   + +A  ++  + +K F PD   ++ ++ 
Sbjct: 684 ISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH 743

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
           G    G   +A  L +VM + G +PN+ +Y  +I+  CK                 ++  
Sbjct: 744 GCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSG---------------KLSR 788

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             +L  +++ +G  P+G+TYN LI     +    EA ++ ++MV  G +PT+ TY++++ 
Sbjct: 789 AVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIY 848

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
                G  E   K+ D+MI     P+  +Y  LI G I      E  K  +EM  +G+
Sbjct: 849 GLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGL 906



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLG 356
           A ++FE +   +F     T + L+     S    EA  L D  L    TPN+ TY  L+ 
Sbjct: 719 AKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIY 778

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   L  A  ++N++  KG  P+ + +N +++   K GK ++A KL + M  +G  P
Sbjct: 779 GLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQP 838

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            V +Y+I+I+  C Q          G+     M+    LL +M E    P+ +TY  LI 
Sbjct: 839 TVITYSILIYGLCTQ----------GY-----MEEAIKLLDQMIENNVDPNYITYCTLIH 883

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPT 502
                   +E  ++Y EM   G  PT
Sbjct: 884 GYIKSGNMEEISKLYDEMHIRGLLPT 909



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 2/231 (0%)

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +P +V+H  +L  L +  +  DA  L   +        +  +   +++    +A  +  L
Sbjct: 97  RPSLVSHAQLLHILARARRFHDARALLSSLPPHAEP--LFPHLAEVYRDFTFSAVSFDLL 154

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +    +  ++    ++   M + GC P   + N L+  +     P  A  +Y +M  +G 
Sbjct: 155 LRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGV 214

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P   T  ++ K+Y + G      +  +EM   G   +  +Y  ++        + +A +
Sbjct: 215 LPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARR 274

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
            LE +  KG+   V+ Y        + GR    + + ++M+ +G   V  V
Sbjct: 275 ILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 196/463 (42%), Gaps = 75/463 (16%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF------- 261
           L+  L+   L R R     A   F  A  +P    +++    ++ IL RAR+F       
Sbjct: 68  LTPALLQAALRRVRLDPDAALHLFRLAPSRPSLVSHAQ----LLHILARARRFHDARALL 123

Query: 262 -------ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
                  E +   L E+      S  +F + + A A A +   A+ +F+ M K   +  +
Sbjct: 124 SSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSL 183

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
            + N LL  L +S  P  A +++ +++     P+  T  ++   +CR   + +A     E
Sbjct: 184 RSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEE 243

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI---------- 423
           M   G + ++VA++ +++    +G   DA ++ E ++ KG SPNV +YT+          
Sbjct: 244 MEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGR 303

Query: 424 --------------------------MIWKFCKQ--------------------NAAVYT 437
                                     MI  +C++                    N  VY 
Sbjct: 304 MEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYN 363

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            +I G     RM+ V  +L+EME+ G  PD  +YN LI     +    +A  + + MVR+
Sbjct: 364 TMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRN 423

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G   T  TYN ++K +      +   ++W  M++RG  P++ S + L+ GL    ++ +A
Sbjct: 424 GLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQA 483

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
               +E L +G+   V+ +N     L + GR    +EL  +M+
Sbjct: 484 LNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMK 526



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 17/344 (4%)

Query: 240 GFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
           G A N  T+N++++ L   GR  + E ++  ++E+  +      T++   + +    +  
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKEL--RCPPDSLTYRTLFDGYCKLGQLG 551

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            A  +   M    F   V+  N  +     +K   +   +  ++  R  +PNL TY  L+
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            GWC+  NL EA  ++ EM++ G  P+V   + ++    K GK  +A  + + +      
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 416 PNVRSYTIMIWKFCK-----------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           P     TI I K                  ++  +I G     R+     L + +  +  
Sbjct: 672 PGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRF 731

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD  TY++LI         DEA  +   M+ +G  P I TYN ++    ++G       
Sbjct: 732 LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVN 791

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++++  +G  P+  +Y  LI     + ++ EA+K  ++M+E+G
Sbjct: 792 LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEG 835



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 157/371 (42%), Gaps = 26/371 (7%)

Query: 256 GRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
           GR  Q    V  +EEM   GL +++  +   M+ +      + A  I E + +      V
Sbjct: 232 GRVAQ---AVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNV 288

Query: 315 DTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
            T   L++   +    +EA+ +  ++K       +   Y +++ G+C+   + +A RV N
Sbjct: 289 VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRN 348

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN 432
           EM D G   ++  +N M+ GL K+G+  +  K+ + M+  G  P+  SY  +I  +C++ 
Sbjct: 349 EMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREG 408

Query: 433 AA--------------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           +                      Y  L+ GF +   +D    L   M +RG  P+ ++ +
Sbjct: 409 SMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCS 468

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+  +      ++A+ ++KE +  G    + T+N ++    + G      ++ D M   
Sbjct: 469 TLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKEL 528

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
            C PD  +Y  L  G     + G A   + +M   G    V  +N F      A + + +
Sbjct: 529 RCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKV 588

Query: 593 DELAQKMRFSG 603
           +++  +M   G
Sbjct: 589 NDIHSEMSARG 599



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 50/361 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   N   YN+M++ L +  + E +  +L+EM + G+   + ++   ++ +      +KA
Sbjct: 354 GIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKA 413

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
             +  +M +    A   T                                  Y  LL G+
Sbjct: 414 FEMCRMMVRNGLAATTLT----------------------------------YNTLLKGF 439

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C +  + +A R+W  M+ +G  P+ ++ + +L+GL K GK   A+ L++   A+G + NV
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNV 499

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            ++  +I   CK                 RM    +LL  M+E  CPPD LTY  L    
Sbjct: 500 ITFNTVINGLCKIG---------------RMAEAEELLDRMKELRCPPDSLTYRTLFDGY 544

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
                   A  +  +M   GF P++  +N  +  +F    +     +  EM  RG  P+ 
Sbjct: 545 CKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNL 604

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            +Y  LI G   +    EA     EM+  GM   V   +   +   + G+    + + QK
Sbjct: 605 VTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQK 664

Query: 599 M 599
           +
Sbjct: 665 L 665



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 35/222 (15%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N ++  L +S    +A+ LF+ L++ RF P+  TY+ L+ G     ++ EA  + + M+ 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
            G  P+++ +N ++ GL K GK S A+ LF  +++KG SPN  +Y  +I ++CK+     
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTE 823

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                           + L ++M E G                     +EA+++  +M+ 
Sbjct: 824 A---------------FKLKQKMVEEG-------------------YMEEAIKLLDQMIE 849

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
           +   P   TY  ++  Y ++GN E   K++DEM  RG  P +
Sbjct: 850 NNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTN 891



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 2/231 (0%)

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +P +V+H  +L  L +  +  DA  L   +        +  +   +++    +A  +  L
Sbjct: 97  RPSLVSHAQLLHILARARRFHDARALLSSLPPHAEP--LFPHLAEVYRDFTFSAVSFDLL 154

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +    +  ++    ++   M + GC P   + N L+  +     P  A  +Y +M  +G 
Sbjct: 155 LRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGV 214

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P   T  ++ K+Y + G      +  +EM   G   +  +Y  ++        + +A +
Sbjct: 215 LPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARR 274

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNV 610
            LE +  KG+   V+ Y        + GR    + + ++M+ +G   V  V
Sbjct: 275 ILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 170/372 (45%), Gaps = 30/372 (8%)

Query: 228 AFRFF---CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFK 283
           AF+FF    ++   P  +    ++  ++S L + + +  +  +  +M   G+     T  
Sbjct: 80  AFQFFHLMMYSNPTPPLS----SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KH 342
           I +N         + +A+   + +  +   + T   L++ L       +A LLF ++ K 
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG------FKPDVVAHNIMLEGLLKI 396
             TPN  TY  L+ G CR  N+  A ++  EM++        FKP V++++I+++ L K 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
            +  +A  LFE MK +G +P V SYT +I  FC                  + +    L 
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGG---------------KWEEAKRLF 300

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM  +G  P+ +T+N LI ++  +    EA  + + M++ G  P + TYN +++ +   
Sbjct: 301 NEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLV 360

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G+    R+++  M  +GC PD   YTVLI G     +  EA K    ML+ G +  V  Y
Sbjct: 361 GDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 420

Query: 577 NKFAADLSRAGR 588
                 L + G+
Sbjct: 421 GALLTGLFQGGK 432



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 16/291 (5%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAG 368
           FK  V + + +++ L + +   EA+ LF+++K    TP + +YT L+ G+C      EA 
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK 297

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           R++NEM+++G +P+VV  N++++ L K GK  +A  L EVM  +G  PN+ +Y  +I  F
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGF 357

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C          + G  N  R     +L   M  +GC PD + Y  LI         +EA+
Sbjct: 358 C----------LVGDLNSAR-----ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAM 402

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++Y  M++ G +P + TY  ++   FQ G     +K++  M   G   D   Y + + GL
Sbjct: 403 KLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGL 462

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
                  EA +   ++    +K  +  +N     L +AG+     EL +K+
Sbjct: 463 CKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKL 513



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 172/381 (45%), Gaps = 31/381 (8%)

Query: 206 GIN-----LSHNLVVDVL--ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA 258
           GIN     +S+++++D L  +R     R  F      G  P       +Y S++      
Sbjct: 235 GINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI----SYTSLIHGFCCG 290

Query: 259 RQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            ++E    +  EM  +G+  ++ TF + ++      +  +A  + E+M +      + T 
Sbjct: 291 GKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTY 350

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N L+E          A+ LF  +  +   P++  YTVL+ G+C+   + EA +++N M+ 
Sbjct: 351 NSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ 410

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
            G +PDV  +  +L GL + GK  DA KLF VMK  G   ++  Y I +   CK      
Sbjct: 411 VGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNG---- 466

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
            CL        ++   Y++  ++E   C  DGL         K  K+ + A  +++++ +
Sbjct: 467 -CLFEAMELFNKLK-SYNIKLDIECFNCLIDGLC--------KAGKL-ETAWELFEKLPQ 515

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
              +P + TYN+++  + + G       ++ +M + GC PD  +Y  LI G     +  +
Sbjct: 516 EELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEK 575

Query: 557 AYKYLEEMLEKGMKAPVLDYN 577
             + L  M+++ +    LD N
Sbjct: 576 VVELLHMMVQRDVS---LDVN 593



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
           + A + F +M    P+P + S+T ++    K                     +      L
Sbjct: 78  TQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNIL 137

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +    N  R+     ++  +  RG  PD +TY  LIK + ++    +A  ++  M + G 
Sbjct: 138 LNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGC 197

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC------PDDNSYTVLIGGLISQDR 553
            P   TY  +MK   +TGN  +  K+  EM+           P   SY+++I  L    R
Sbjct: 198 TPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRR 257

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             EA    EEM  +GM   V+ Y          G+
Sbjct: 258 EDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGK 292


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 175/387 (45%), Gaps = 23/387 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TYNS++  L +AR  +    +L +M +KG+     T+   ++ ++ +   K++
Sbjct: 294 GVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKES 353

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F  M       G+ T N  + +L +    K+A+ +F  +  +   P+L +Y++LL G
Sbjct: 354 AKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHG 413

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +       +   +++ M DKG   +    NI++    K G   +A+ +F  M+ +G  P+
Sbjct: 414 YATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPD 473

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y+ +I  FC+                     N  VY  LI GF     +    +L+ 
Sbjct: 474 VVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVS 533

Query: 458 EMEERGCP-PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           EM  +G P P+ + ++++I  +  +    +A  ++  ++  G +PTI T+N ++  Y   
Sbjct: 534 EMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLV 593

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E    V D M+  G  PD  +Y  L+ G     +  +      EML K +K   + Y
Sbjct: 594 GKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTY 653

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           +     L  AGR+    ++  +M  SG
Sbjct: 654 SIVLDGLFHAGRTSAAKKMFHEMIDSG 680



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 161/362 (44%), Gaps = 33/362 (9%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKG-LLSMETFKI 284
           FR     G  PG      T+NS MS L   GR++  E    + + M  KG +  + ++ I
Sbjct: 357 FRKMTSKGLIPGIV----TFNSFMSSLCKHGRSKDAE---EIFQYMTTKGHMPDLVSYSI 409

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR- 343
            ++ +A          +F  M      A     N L+    +  +  EA L+F +++ + 
Sbjct: 410 LLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQG 469

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P++ TY+ L+  +CR+  L +A   +++MI  G +P+ V ++ ++ G    G    A 
Sbjct: 470 VRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAK 529

Query: 404 KLFEVMKAKG-PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITG 442
           +L   M +KG P PN+  ++ +I   C +                        +  LI G
Sbjct: 530 ELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDG 589

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
           +    +M+  + +L  M   G  PD +TYN L+         D+ + +++EM+    KPT
Sbjct: 590 YCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPT 649

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TY++++   F  G     +K++ EMI  G   D ++Y +L+ GL   D + EA     
Sbjct: 650 TVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFH 709

Query: 563 EM 564
           ++
Sbjct: 710 KL 711



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 145/342 (42%), Gaps = 41/342 (11%)

Query: 285 AMNAFAAAKERKK--------AVAIFELMNKY-KFKAG-------VDTINCLLENLGRSK 328
           A+N F AA  R             +  L N+  + +AG       V T   L++   R++
Sbjct: 111 ALNGFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRVAPLSVHTYGILMDCCCRAR 170

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTV----LLGGWCRVKNLMEAGRVW-NEMIDKGFKPDV 383
            P      F +L       L T T+     L   C  K   EA  V  + M D G  P+ 
Sbjct: 171 RPDLGPAFFARL---LRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNA 227

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--SPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           +++N +++ L    +  +A+ + + M  +G   SP+V S+  +I  F KQ      C   
Sbjct: 228 ISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC--- 284

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
                       +L+ EM ++G  PD +TYN+++  +   +  D+A  + ++MV  G +P
Sbjct: 285 ------------NLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEP 332

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
              TY  I+  Y  +G+++   K++ +M  +G  P   ++   +  L    RS +A +  
Sbjct: 333 DGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIF 392

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + M  KG    ++ Y+      +  GR   ++ L   M   G
Sbjct: 393 QYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKG 434



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 141/329 (42%), Gaps = 19/329 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF-EL 304
           TY++++S   R  +    +    +M   GL  +   +   ++ F    +  KA  +  E+
Sbjct: 476 TYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEM 535

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKN 363
           M+K   +  +   + ++ +L       +A  +F+ + H    P + T+  L+ G+C V  
Sbjct: 536 MSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 595

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
           + +A  V + M+  G +PDVV +N ++ G  K GK  D + LF  M  K   P   +Y+I
Sbjct: 596 MEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSI 655

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
                          ++ G  +  R      +  EM + G   D  TY  L+K +    +
Sbjct: 656 ---------------VLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDL 700

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            DEA+ ++ ++     K  I   N ++ + ++    E    ++  +   G  P+ ++Y V
Sbjct: 701 TDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGV 760

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           +I  L+ +    EA      M EK   AP
Sbjct: 761 MIHNLLKEGSVEEADTMFSSM-EKSGCAP 788



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 138/328 (42%), Gaps = 18/328 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKK 297
           G   N+  Y+S++              ++ EM  KG+   ++  F   +++         
Sbjct: 504 GLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMD 563

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A  +F L+     +  + T N L++      K+ K   +L   +     P++ TY  L+ 
Sbjct: 564 AHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVS 623

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+   + +   ++ EM+ K  KP  V ++I+L+GL   G+ S A K+F  M   G + 
Sbjct: 624 GYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAV 683

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           ++ +Y I++   C+ +                 D    L  ++    C  D    N +I 
Sbjct: 684 DIDTYKILLKGLCRNDLT---------------DEAITLFHKLGAMDCKFDITILNTVIN 728

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +   +  +EA  ++  +  SG  P + TY +++ +  + G+ E    ++  M + GC P
Sbjct: 729 ALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAP 788

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEM 564
                  +I  L+ +    +A  Y+ ++
Sbjct: 789 SSRLLNDIIRMLLQKGDIVKAGYYMSKV 816


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 169/368 (45%), Gaps = 34/368 (9%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK------GLLSMETFKIAMNAFAAAK 293
           GF  N  ++ S++ +L     F++ +  + EM  +      GLL+       ++      
Sbjct: 422 GFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLT-----TLISGLCKHG 476

Query: 294 ERKKAVAIF-ELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTY 351
           +  KAV ++ + +NK  F     T N LL  L  + KL +  ++  + L   F  +  +Y
Sbjct: 477 KHSKAVELWLKFLNK-GFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSY 535

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
             L+ G C  K L EA    +EM+ KG KPD   ++I++ GLL + K  +AI+ +   K 
Sbjct: 536 NTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKR 595

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
            G  P+V +Y++MI   CK                     N  VY  LI  +    R+ +
Sbjct: 596 NGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSM 655

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             +L ++M+ +G  P+  TY +LIK M I    +EA  + +EM   G +P +  Y  ++ 
Sbjct: 656 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALID 715

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y + G       +  EM  +   P+  +YTV+IGG        EA + L EM EKG+  
Sbjct: 716 GYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVP 775

Query: 572 PVLDYNKF 579
             + Y +F
Sbjct: 776 DSITYKEF 783



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 166/389 (42%), Gaps = 22/389 (5%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   N  TYN+++  LG + +++      E+M E+G+  ++ T+ I +     AK  
Sbjct: 279 EEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRI 338

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             A  + + M +  F   V   N L+++L  +    +A  + D +  +  +   +TY  L
Sbjct: 339 GDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTL 398

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C+      A R+  EM+  GF  +  +   ++  L        A++    M  +  
Sbjct: 399 IKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNM 458

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
           SP     T +I   CK                     +      L+ G     +++  + 
Sbjct: 459 SPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFR 518

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           + KE+  RG   D ++YN LI      K  DEA     EMV+ G KP  +TY+++++   
Sbjct: 519 IQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLL 578

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
                E   + W +  R G  PD  +Y+V+I G    +R+ E  K  +EM+   ++   +
Sbjct: 579 NMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTV 638

Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            YN       R+GR  +  EL + M+  G
Sbjct: 639 VYNHLIGAYCRSGRLSMALELREDMKHKG 667



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 17/273 (6%)

Query: 298 AVAIFELM-NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
           A+ +F ++ NK  F +   T N LL +L R+   ++    F  +    +P++  +T  + 
Sbjct: 202 ALDVFPVLANKGMFPSKT-TCNILLTSLVRATEFQKCCEAFHVVCKGVSPDVYLFTTAIN 260

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            +C+   + EA  ++++M + G  P+VV +N +++GL   G+  +A    E M  +G  P
Sbjct: 261 AFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEP 320

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            + +Y+I               L+ G    +R+   Y +LKEM E+G PP+ + YN LI 
Sbjct: 321 TLITYSI---------------LVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLID 365

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +      ++A+ I   MV  G   T  TYN ++K Y ++G  ++  ++  EM+  G   
Sbjct: 366 SLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNV 425

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           +  S+T +I  L S      A +++ EML + M
Sbjct: 426 NQGSFTSVICLLCSHHMFDSALRFVGEMLLRNM 458



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 161/369 (43%), Gaps = 23/369 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N   YN+++  L  A      + + + M  KGL L+  T+   +  +  + +   A
Sbjct: 352 GFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIA 411

Query: 299 VAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
             + + M    F   +    ++ CLL            + + + L    +P     T L+
Sbjct: 412 ERLLKEMLSIGFNVNQGSFTSVICLL--CSHHMFDSALRFVGEMLLRNMSPGGGLLTTLI 469

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+     +A  +W + ++KGF  D    N +L GL + GK  +  ++ + +  +G  
Sbjct: 470 SGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFV 529

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +  SY  +I   C              GN++ +D  +  + EM ++G  PD  TY+ LI
Sbjct: 530 MDRVSYNTLISGCC--------------GNKK-LDEAFMFMDEMVKKGLKPDNYTYSILI 574

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           + L+ + K+ +EA++ + +  R+G  P ++TY++++    +    E G+K++DEM+    
Sbjct: 575 RGLLNMNKV-EEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNL 633

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            P+   Y  LIG      R   A +  E+M  KG+      Y      +S   R      
Sbjct: 634 QPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 693

Query: 595 LAQKMRFSG 603
           L ++MR  G
Sbjct: 694 LLEEMRMEG 702



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%)

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           V+  + +KG  P     NI+L  L++  +     + F V+  KG SP+V  +T  I  FC
Sbjct: 205 VFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVV-CKGVSPDVYLFTTAINAFC 263

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           K                 +++   +L  +MEE G  P+ +TYN +I  + +    DEA  
Sbjct: 264 KGG---------------KVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFM 308

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
             ++MV  G +PT+ TY++++K   +         V  EM  +G  P+   Y  LI  LI
Sbjct: 309 FKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLI 368

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
                 +A +  + M+ KG+      YN       ++G++ + + L ++M
Sbjct: 369 EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEM 418



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 2/163 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N+  YN ++    R+ +    + + E+M  KG+  +  T+   +   +     ++A  + 
Sbjct: 636 NTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLL 695

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           E M     +  V     L++  G+  ++ K   LL +       PN  TYTV++GG+ R 
Sbjct: 696 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 755

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            N+ EA R+ +EM +KG  PD + +   + G LK G    A K
Sbjct: 756 GNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFK 798



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 2/198 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+ M+    +A + E    + +EM    L  +   +   + A+  +     A
Sbjct: 597 GMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMA 656

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + E M          T   L++ +      +EA+LL ++++     PN+  YT L+ G
Sbjct: 657 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDG 716

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + ++  +++   +  EM  K   P+ + + +M+ G  + G  ++A +L   M+ KG  P+
Sbjct: 717 YGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPD 776

Query: 418 VRSYTIMIWKFCKQNAAV 435
             +Y   I+ + KQ   +
Sbjct: 777 SITYKEFIYGYLKQGGVL 794


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 153/331 (46%), Gaps = 16/331 (4%)

Query: 274 KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKE 332
           + L S+  F   ++A +  K+    + ++E M        + T N LL    R S+L   
Sbjct: 76  RPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLA 135

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
              L   +K    P++ T+  LL G+CR   + +A  +++ M++ G++P+VV +N +++G
Sbjct: 136 LSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDG 195

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           L K  +  +A+ L   M+  G  P+               A  Y  LI+G  N  R D  
Sbjct: 196 LCKSKQVDNALDLLNRMEVDGIRPD---------------AVTYNSLISGLCNSGRWDDA 240

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             ++  M +R   PD  T+NALI     +    EA  +Y+EM+R    P I TY++++  
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
                  +   +++  M+ +GC PD  +Y++LI G     +     K   EM ++G+   
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            + Y        RAG+  V +E+ + M F G
Sbjct: 361 TVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG 391



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 167/371 (45%), Gaps = 26/371 (7%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKK 297
           P  A  SR    ++S + + ++++ ++ + E+M   G+  ++ T  I +N F    +   
Sbjct: 79  PSIADFSR----LLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSL 134

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A++    M K   +  + T   LL    R     +A  +FD++ +  + PN+  Y  ++ 
Sbjct: 135 ALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIID 194

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+ K +  A  + N M   G +PD V +N ++ GL   G+  DA ++   M  +   P
Sbjct: 195 GLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYP 254

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           +V ++  +I    K+                    +   Y+ LI G     R+D    + 
Sbjct: 255 DVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMF 314

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
             M  +GC PD +TY+ LI      K  +  ++++ EM + G      TY ++++ Y + 
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRA 374

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G   +  +++  M+  G  P+  +Y VL+ GL    +  +A   L +M + GM A ++ Y
Sbjct: 375 GKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTY 434

Query: 577 NKFAADLSRAG 587
           N     + +AG
Sbjct: 435 NIIIRGMCKAG 445



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 158/332 (47%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  N   YN+++  L +++Q +  + +L  M   G+     T+   ++    +     A
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M K +    V T N L++   +     EA+ L++++  R   P++ TY++L+ G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    L EA +++  M+ KG  PDVV ++I++ G  K  K    +KLF  M  +G   N
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT++I  +C+                 ++++  ++ K M   G PP+ +TYN L+  
Sbjct: 361 TVTYTVLIQGYCRAG---------------KLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      ++A+ I  +M +SG    I TYN+I++   + G       ++  +  +G  PD
Sbjct: 406 LCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +YT ++ GL  +   GEA     +M E G+
Sbjct: 466 IWTYTAMMLGLYKKGLRGEADALFRKMKEDGI 497



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 168/386 (43%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G  HN  T N +++   R  Q    +S L +M + G    + TF   +N F        A
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDA 170

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           + +F+ M +  ++  V   N +++ L +SK    A  L ++++     P+  TY  L+ G
Sbjct: 171 LYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISG 230

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C      +A R+ + M  +   PDV   N +++  +K G+ S+A +L+E M  +   P+
Sbjct: 231 LCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290

Query: 418 VRSYTIMIW--------------------KFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           + +Y+++I+                    K C  +   Y+ LI G+   ++++    L  
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + +TY  LI+        + A  I+K MV  G  P I TYN+++      G
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNG 410

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             E    +  +M + G   D  +Y ++I G+       +A+     +  KG+   +  Y 
Sbjct: 411 KIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYT 470

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                L + G     D L +KM+  G
Sbjct: 471 AMMLGLYKKGLRGEADALFRKMKEDG 496



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 2/173 (1%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY+ +++   ++++ E  + +  EM ++G++ +  T+ + +  +  A +   A  IF+ M
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWM 387

Query: 306 NKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                   + T N LL  L    K+ K   +L D  K     ++ TY +++ G C+   +
Sbjct: 388 VFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEV 447

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            +A  ++  +  KG  PD+  +  M+ GL K G R +A  LF  MK  G  PN
Sbjct: 448 ADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 66/156 (42%)

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
           ++D   DL   M +    P    ++ L+  +   K  D  + ++++M   G    + T N
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +++  + +     +      +M++ G  PD  ++  L+ G    DR  +A    + M+E 
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           G +  V+ YN     L ++ +     +L  +M   G
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG 216


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 167/365 (45%), Gaps = 19/365 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           GF  +  +Y +++  L  AR+++ +  +  EM +K  +  E TF + +  F      ++A
Sbjct: 252 GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERA 311

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
           + + + M+++         N ++  + +     +A    + +  +   P+  +YT +L G
Sbjct: 312 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 371

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR      A  +  EM+ K   P+ V  N  +  L + G    AIKL E+M   G S  
Sbjct: 372 LCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVG 431

Query: 418 VRSYTIMIWKFCKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           + +Y  ++  FC Q                 N   YT L+TG  +  R+D   +LL EM 
Sbjct: 432 IVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMI 491

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
           ++ CP + +T+N L+     +   +EA+ +  +M+  G  P + T+N ++    +  N E
Sbjct: 492 QKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSE 551

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++   ++ +G   D  +Y+ ++  L  +DR+ EA + L  + + GM+  V  YNK  
Sbjct: 552 EALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKIL 611

Query: 581 ADLSR 585
             L +
Sbjct: 612 FALCK 616



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 16/279 (5%)

Query: 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGR 369
           +  V T   LLE + +S    EA  + D+++ +  TPN+ TY V++ G CR   + +A  
Sbjct: 184 QPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKE 243

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           + N +   GF+PD+V++  +L+GL    +  D   LF  M  K   PN  ++ +++  FC
Sbjct: 244 ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 303

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
           +           G   R        +L++M + GC P+    N +I  +  Q   D+A  
Sbjct: 304 RG----------GMVER-----AIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYD 348

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
               M   G  P   +Y  +++   + G +E  +++  EM+R+ C P++ ++   I  L 
Sbjct: 349 FLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILC 408

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +    +A K +E M E G    ++ YN         GR
Sbjct: 409 QKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 447



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 170/382 (44%), Gaps = 20/382 (5%)

Query: 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETF 282
           A   A R  C    + G   +  TY  ++  + ++  F   +++L+EM  KG   ++ T+
Sbjct: 166 AEGSATRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTY 225

Query: 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLK 341
            + +N          A  I   ++ Y F+  + +   +L+ L  ++   + ++LF + + 
Sbjct: 226 NVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVD 285

Query: 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401
            +  PN  T+ +L+  +CR   +  A +V  +M   G  P+    NI++  + K G+  D
Sbjct: 286 KKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDD 345

Query: 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           A      M   G +P+  SYT ++   C+                 R +   +LL EM  
Sbjct: 346 AYDFLNNMGMYGCNPDTISYTTVLRGLCRAG---------------RWEHAKELLPEMVR 390

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           + CPP+ +T+N  I ++  + + ++A+++ + M   G    I TYN ++  +   G  + 
Sbjct: 391 KNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDS 450

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
             ++++ +    C P+  +YT L+ GL   +R   A + L EM++K      + +N   +
Sbjct: 451 ALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVS 507

Query: 582 DLSRAGRSYVLDELAQKMRFSG 603
              + G      EL  +M   G
Sbjct: 508 FFCQKGFVEEAMELVNQMMEHG 529



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 148/334 (44%), Gaps = 24/334 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   ++ +Y +++  L RA ++E    +L EM  K     E TF   +         ++A
Sbjct: 357 GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQA 416

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           + + ELM +Y    G+ T N L+           A  LF+ L     PN  TYT LL G 
Sbjct: 417 IKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE--PNTITYTTLLTGL 474

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C  + L  A  +  EMI K    + V  N+++    + G   +A++L   M   G +PN+
Sbjct: 475 CHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNL 534

Query: 419 RSYTIM---IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            ++  +   I K C    A+                  +LL  +  +G   D +TY++++
Sbjct: 535 ITFNTLLDGITKDCNSEEAL------------------ELLHGLVSKGVSLDTITYSSVV 576

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            ++  +   +EA+++   +   G +P +  YN I+ +  +    +     +  M+  GC 
Sbjct: 577 DVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCM 636

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           P++++Y +LI GL  +    EA   L E+  KG+
Sbjct: 637 PNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 670


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 170/354 (48%), Gaps = 18/354 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+  FC   D  G   N  T NS++  L + +  +   ++L++M ++ ++ +  T+   +
Sbjct: 271 AYTLFCKMLDH-GIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 329

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFT 345
           + + ++ +  +AV I + M++   +  V T + L++ L +S L  EA+ +F+ + +    
Sbjct: 330 HGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQK 389

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN +TY  LL G+    NL++   V + M+  G +P     NI +    K G+  +A   
Sbjct: 390 PNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLT 449

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F  M+ +G  P++ +YT +I   CK                 R+D       +M + G  
Sbjct: 450 FNKMQQQGFMPDIVAYTTVIDGLCKIG---------------RLDDAMSRFCQMIDDGLS 494

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +T+N LI    +    ++A  ++ EM+  G  P ++T+N ++   F+ G     RK+
Sbjct: 495 PDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKL 554

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +D M R G  P+  SY  +I G       GE  K L++ML  G+K   + +N  
Sbjct: 555 FDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL 608



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 165/367 (44%), Gaps = 20/367 (5%)

Query: 238 KPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           K G    + T+  ++ ++    R  + M  +L  M E G    + ++   +    A K+ 
Sbjct: 172 KTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKC 231

Query: 296 KKAVAIFELM--NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYT 352
           ++A  +  +M  +       V +   ++    +     +A  LF K L H   PN+ T  
Sbjct: 232 EEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCN 291

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            ++ G C+V+ + +A  V  +MID+   P+   +N ++ G L  G+ ++A+++ + M   
Sbjct: 292 SVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRD 351

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  PNV +Y+++I   CK          +G     R     ++   M + G  P+  TY 
Sbjct: 352 GQRPNVVTYSMLIDCLCK----------SGLHAEAR-----EIFNSMIQSGQKPNASTYG 396

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           +L+     +    +   +   MV++G +P  H +N+ + +Y + G  +     +++M ++
Sbjct: 397 SLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQ 456

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592
           G  PD  +YT +I GL    R  +A     +M++ G+   ++ +N      +  G+    
Sbjct: 457 GFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKA 516

Query: 593 DELAQKM 599
           +EL  +M
Sbjct: 517 EELFYEM 523



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 137/352 (38%), Gaps = 28/352 (7%)

Query: 265 VSMLEEMGEKGL----LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
           VSM   M   G       + TF I ++    A       A    + K   +A   T   L
Sbjct: 126 VSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPL 185

Query: 321 LENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
           L  L   K   +A  +  +       TP++ +YT LL G C  K   EA  + + M + G
Sbjct: 186 LRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDG 245

Query: 379 --FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------ 430
               P+VV++  ++ G  K G    A  LF  M   G  PNV +   +I   CK      
Sbjct: 246 DNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDK 305

Query: 431 --------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                          N   Y  LI G+ +  +      +LKEM   G  P+ +TY+ LI 
Sbjct: 306 AEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLID 365

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +    +  EA  I+  M++SG KP   TY  ++  Y   GN      V D M++ G  P
Sbjct: 366 CLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRP 425

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             + + + I       R  EA     +M ++G    ++ Y      L + GR
Sbjct: 426 GRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGR 477



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 36/319 (11%)

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL-------PKEAQLLFDKLKH----RF 344
           + A+ +F+ + +      +  +N LL  + R+ +       P  A  +F+++      + 
Sbjct: 81  EDALDLFDELLQRARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKV 140

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ T+ +L+   C    L        ++I  G +   V    +L  L    + SDA+ 
Sbjct: 141 APDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMN 200

Query: 405 L-FEVMKAKGPSPNVRSYTIMIWKFCKQ----------------------NAAVYTCLIT 441
           +    M   G +P+V SYT ++   C +                      N   YT +I 
Sbjct: 201 IVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIH 260

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFK 500
           GF     +   Y L  +M + G PP+ +T N++I  L K+Q M D+A  + ++M+     
Sbjct: 261 GFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAM-DKAEAVLQQMIDEHIM 319

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P   TYN ++  Y  +G +    ++  EM R G  P+  +Y++LI  L       EA + 
Sbjct: 320 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREI 379

Query: 561 LEEMLEKGMKAPVLDYNKF 579
              M++ G K     Y   
Sbjct: 380 FNSMIQSGQKPNASTYGSL 398



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +   Y +++  L +  + +  +S   +M + GL   + TF   ++ FA   + +KA
Sbjct: 457 GFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKA 516

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F  M        V+T N +++ L +     EA+ LFD + +    PN+ +Y  ++ G
Sbjct: 517 EELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHG 576

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           +     + E  ++ ++M+  G KP  V  N +L+G++ +G + D +
Sbjct: 577 YFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVV 622


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 167/370 (45%), Gaps = 25/370 (6%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVA 300
           A ++ TY  +++   RA Q   + S +E     G  LS   +   +  F       +A  
Sbjct: 228 ARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQ 287

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWC 359
           +FE     +    V T N LL  L +SK  +EA  LF + +      ++ TY+ L+  + 
Sbjct: 288 LFESTMTKESVPDVFTYN-LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFG 346

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +     +A  V+  M   G  PD V +N+++  L K GK  +A++L E M  KG  P+ R
Sbjct: 347 KAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCR 406

Query: 420 SYTIMI------------WKFC--------KQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +Y I+I            + F           +   Y  L+ G    RR D   DL  EM
Sbjct: 407 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 466

Query: 460 EERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           +   C PD  T+  LI  L K  +M D A+     +V+ G  P  + YN ++  + ++G 
Sbjct: 467 QANKCMPDLTTFGTLIDTLAKAGRMED-ALEQSARLVKMGHAPNSYIYNALISGFCRSGQ 525

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            + G +++ +MI   C PD  +YT+L+ G   +  +  A + L+EM+ +G    +  YN 
Sbjct: 526 VDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 585

Query: 579 FAADLSRAGR 588
               LS AG+
Sbjct: 586 LIRSLSMAGQ 595



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 153/320 (47%), Gaps = 23/320 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TYN +++ L +++Q E  +++ +E  + G+ L + T+   M+AF  A    KA+ +F  M
Sbjct: 303 TYNLLIA-LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNM 361

Query: 306 NKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
            K          N L+  LG+  K+ +  +LL D  +    P+  TY +++         
Sbjct: 362 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRY 421

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A   +  M  +   PDVV +N +L GL K+ +  +A  LF+ M+A    P++ ++  +
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTL 481

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I    K                     N+ +Y  LI+GF    ++D  Y+L ++M E  C
Sbjct: 482 IDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 541

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
            PD +TY  L+     +     A+ + +EMVR G  P + TYN++++S    G  E    
Sbjct: 542 FPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYT 601

Query: 525 VWDEMIRRGCCPDDNSYTVL 544
           ++ EMI +G  PD  +Y+ L
Sbjct: 602 LFKEMIAKGFNPDMQTYSAL 621



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 155/354 (43%), Gaps = 25/354 (7%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-----LLSMETFKIAMNAFAAAKERK 296
           A +   YN++++   +A   +  + M   + ++G      +S +T  I +   + A +  
Sbjct: 122 APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD-- 179

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLL 355
            A+A+F+ M     KA V+  N L+    R  + ++A+ LL     H    +  TY +L+
Sbjct: 180 -ALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILV 238

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              CR   + E           G     V +N +++G ++ G+ ++A +LFE    K   
Sbjct: 239 NAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV 298

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V +Y ++I   CK                ++++    L +E E+ G   D  TY+ L+
Sbjct: 299 PDVFTYNLLI-ALCKS---------------KQLEEALTLFQEAEQGGVVLDVFTYSYLM 342

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                     +A+ ++  M ++G  P    YN+++    + G  +   ++ ++M R+G  
Sbjct: 343 DAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIM 402

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           PD  +Y ++I  L S  R  +AY +   M  +     V+ YN     L +  R+
Sbjct: 403 PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 456



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 22/262 (8%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   ++  YN ++S LG+  + +  + +LE+M  KG++    T+ I ++  ++    +
Sbjct: 363 KAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYE 422

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLL 355
           KA + F +M + K    V T N LL  L + +   EA  LFD+++ ++  P+LTT+  L+
Sbjct: 423 KAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLI 482

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
               +   + +A      ++  G  P+   +N ++ G  + G+     +LF+ M      
Sbjct: 483 DTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 542

Query: 416 PNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDL 455
           P+  +YTI++  F ++                      A Y  LI       +++  Y L
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602

Query: 456 LKEMEERGCPPDGLTYNALIKL 477
            KEM  +G  PD  TY+AL  L
Sbjct: 603 FKEMIAKGFNPDMQTYSALPNL 624



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 131/325 (40%), Gaps = 43/325 (13%)

Query: 313 GVDTINC--LLENLGRSKLPKEAQLLFDKLK--HRFTPNLTTYTVLLGGWCRVKNLMEAG 368
           G+  + C   ++  GR+     A  + D ++  +   P+   +T  +   C V+ + +A 
Sbjct: 50  GLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAM 109

Query: 369 RVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIW 426
            ++++M +     PDVVA+N ++ G  K G    A+ +F  +K +G   PN  S+  ++ 
Sbjct: 110 TLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVI 169

Query: 427 KFCKQNAAV--------------------------YTCLITGFGNRRRMDIVYDLLKEME 460
             CK + A                            TC +      RR      LL  M 
Sbjct: 170 FLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARR------LLHHMT 223

Query: 461 ERGCPPDGLTYNALIKL-MKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGN 518
              C  D  TY  L+    +  +M +  V  + E+ R  G   +   YN I++ + + G 
Sbjct: 224 AHACARDAFTYGILVNAHCRAGQMHE--VASFMELARHDGCALSAVNYNFIIQGFIRCGR 281

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                ++++  + +   PD  +Y +LI  L    +  EA    +E  + G+   V  Y+ 
Sbjct: 282 LAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSY 340

Query: 579 FAADLSRAGRSYVLDELAQKMRFSG 603
                 +AGR+    E+   M+ +G
Sbjct: 341 LMDAFGKAGRAAKALEVFYNMQKAG 365


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 183/391 (46%), Gaps = 21/391 (5%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+ +++  L   +  R+    F     D  G + N R +  ++S L ++ +      + +
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRD--GCSPNVRAFTFLISGLCKSGRVGDARLLFD 312

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M + G++ S+ T+   +  ++       A+ I ELM K        T N L+  L   K
Sbjct: 313 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK 372

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             +  +LL + +K  FTP + T+T L+ G+C  +   +A R+ N+M+    K D+     
Sbjct: 373 TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGK 432

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           ++  L+K  +  +A +L   + A G  PNV +YT +I  +CK                 +
Sbjct: 433 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG---------------K 477

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +DI  ++LK ME  GC P+  TYN+L+  +   K   +A+ +  +M + G  P + TY  
Sbjct: 478 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 537

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++      +++   ++++ M + G  PD+++Y VL   L    R+ EAY ++   + KG
Sbjct: 538 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKG 594

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +    + Y       S+AG +     L ++M
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIERM 625



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 20/334 (5%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           + +  +++ L +  + +    +L E+   GL+ ++ T+   ++ +  + +   A+ + ++
Sbjct: 428 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 487

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKN 363
           M +   +    T N L+  L + K   +A  L  K+ K    PN+ TYT LL G C   +
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 547

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
              A R++  M   G KPD  A+ ++ + L K G+  +A                  Y+ 
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA------------------YSF 589

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           ++ K        YT LI GF      D    L++ M + GC PD  TY+ L+  +  QK 
Sbjct: 590 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA+ I  +M   G K TI  Y +++    + G ++  +++++EM   G  P   +YTV
Sbjct: 650 LNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTV 709

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            I     + R  +A   + +M  +G+   V+ YN
Sbjct: 710 FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 743



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 187/452 (41%), Gaps = 78/452 (17%)

Query: 214 VVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRAR---QFETMVSML 268
           V D+      A  PA    FF W   + GF H + ++ +++ +L R R   Q+E +V  +
Sbjct: 57  VADLFRADSTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSM 116

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-YKFKAGVDTINCLLENLGRS 327
               +    + E  +++ +A  A   R+   A   L  K Y F          L +L R 
Sbjct: 117 LNCSD----TAEDMRVSADAIQAI--RRTGSARLALSPKCYNFA---------LRSLARF 161

Query: 328 KLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            + +    ++ +L +    P+  TY  ++  +C+  +L  A R +  +++ G +P+    
Sbjct: 162 DMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTC 221

Query: 387 N-----------------------------------IMLEGLLKIGKRSDAIKLFEVMKA 411
           N                                   I+++GL        A+ LF +MK 
Sbjct: 222 NALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKR 281

Query: 412 KGPSPNVRSYTIMIWKFCK---------------QNAAV-----YTCLITGFGNRRRMDI 451
            G SPNVR++T +I   CK               QN  V     Y  +I G+    RM+ 
Sbjct: 282 DGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMND 341

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              + + ME+ GC PD  TYN LI  +  QK  +EA  +    V+ GF PT+ T+  ++ 
Sbjct: 342 ALKIKELMEKNGCHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFTPTVVTFTNLIN 400

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y     ++   ++ ++M+   C  D   +  LI  LI +DR  EA + L E+   G+  
Sbjct: 401 GYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVP 460

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V+ Y        ++G+  +  E+ + M   G
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDG 492



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 152/353 (43%), Gaps = 3/353 (0%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G A     Y +++    +A   +   +++E M ++G      T+ + ++A    K   
Sbjct: 592 RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN 651

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ I + M+    K  +     L++ + R      A+ +++++      P+ TTYTV +
Sbjct: 652 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 711

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             +C+   L +A  +  +M  +G  PDVV +NI+++G   +G    A    + M      
Sbjct: 712 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 771

Query: 416 PNVRSYTIMIWKFCKQNAA-VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           PN  +Y +++    K N A V +   +G  N   +DI + LL+ M + G  P   TY++L
Sbjct: 772 PNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSL 831

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I         +EA  +   M   G  P    Y +++K    T  +E        M   G 
Sbjct: 832 IAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGF 891

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            P   SY +L+ GL ++    +      ++LE G     + +      L +AG
Sbjct: 892 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAG 944



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           QLL   +KH   P +TTY+ L+ G+C+   L EA  + + M  KG  P+   + ++++  
Sbjct: 811 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCC 870

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
                   A+    +M   G  P + SY +++   C +                    + 
Sbjct: 871 CDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDE 930

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
             +  L  G      +DI + +L  ME+R C     TY
Sbjct: 931 VAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 968



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +LE M + GL  ++ T+   +  F  A   ++A  + + M         D    L++   
Sbjct: 812 LLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCC 871

Query: 326 RSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +K  ++A      +    F P L +Y +L+ G C   +  +   ++ ++++ G+  D V
Sbjct: 872 DTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEV 931

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           A  I+ +GLLK G      ++  +M+ +    + ++Y ++
Sbjct: 932 AWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALV 971


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 28/386 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF+    TYN++++ L +  ++E    +  EM   GL    T   ++     A ++  AV
Sbjct: 290 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL--LMEACKKGDAV 347

Query: 300 AIFELMNKYKFKAGVDTINC---LLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
               + +  + +  V  + C   ++    RS    +A + F+ +K     P+   YT+L+
Sbjct: 348 ETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 407

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+CR   + EA  + NEM+ +G   DVV +N +L GL K     +A KLF  M  +G  
Sbjct: 408 QGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLF 467

Query: 416 PNVRSYTIMIWKFCK----QNA----------------AVYTCLITGFGNRRRMDIVYDL 455
           P+  + TI+I   CK    QNA                  Y  L+ GFG    +D   ++
Sbjct: 468 PDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEI 527

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             +M  +   P  ++++ L+  +  +    EA R++ EM+    KPT+   N ++K Y +
Sbjct: 528 WADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCR 587

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK--GMKAPV 573
           +GN   G    ++MI  G  PD  SY  LI G + ++   +A+  +++M EK  G+   V
Sbjct: 588 SGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDV 647

Query: 574 LDYNKFAADLSRAGRSYVLDELAQKM 599
             YN       R  +    + + +KM
Sbjct: 648 FTYNSILHGFCRENQMKEAEAVLRKM 673



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 179/392 (45%), Gaps = 30/392 (7%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N  T N M++ L +  + E + + L E+ EKG+   + T+   ++A+++    +
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           +A  +   M    F  GV T N ++  L +  K  +  ++  + L+   +P+ TTY  LL
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+  + +E   ++++M  +   PD+V  + M+    + G    A+  F  +K  G  
Sbjct: 338 MEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLI 397

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           P+   YTI+I  +C++                    +   Y  ++ G   R+ +     L
Sbjct: 398 PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 457

Query: 456 LKEMEERGCPPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             EM ERG  PD  T   LI    KL  +Q     A+ ++K+M     K  + TYN ++ 
Sbjct: 458 FNEMTERGLFPDSYTLTILIDGHCKLGNLQN----AMELFKKMKEKRIKLDVVTYNTLLD 513

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            + + G+ +  +++W +M+ +   P   S+++L+  L S+    EA++  +EM+ K +K 
Sbjct: 514 GFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKP 573

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V+  N       R+G +   +   +KM   G
Sbjct: 574 TVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 147/333 (44%), Gaps = 50/333 (15%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G A +  TYN+++  L + +       +  EM E+GL     T  I ++        +
Sbjct: 428 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQ 487

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
            A+ +F+ M + + K  V T N LL+  G+   +    ++  D +     P   ++++L+
Sbjct: 488 NAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILV 547

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C   +L EA RVW+EMI K  KP V+  N M++G  + G  SD     E M ++G  
Sbjct: 548 NALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFV 607

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+  SY  +I+               GF     M   + L+K+MEE+             
Sbjct: 608 PDCISYNTLIY---------------GFVKEENMSKAFGLVKKMEEK------------- 639

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
                               + G  P + TYN I+  + +    +    V  +MI RG  
Sbjct: 640 --------------------QGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVN 679

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           PD ++YT LI G +SQD   EA+++ +EML++G
Sbjct: 680 PDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRG 712



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 192/454 (42%), Gaps = 46/454 (10%)

Query: 181 IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG-DKP 239
           +E++C      FSL +    V +   I L+   VV+VL R R+      RF    G + P
Sbjct: 45  VEKIC------FSLKQGNSNVRNHL-IRLNPLAVVEVLYRCRNDLSLGQRFVDQLGFNFP 97

Query: 240 GFAHNSRTYNSMMSILGRA-RQFETMVSMLEEMGEKGLLSME-----------------T 281
            F H S + ++M+ IL R+ R  +    +L  +   G+  +E                  
Sbjct: 98  NFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSV 157

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL- 340
           F + +  F  A++ ++A   F L+    +   +D  N L+ +L R    + A  ++ ++ 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           +     N+ T  +++   C+   + + G   +E+ +KG  PD+V +N ++      G   
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           +A +L   M +KG SP V +Y  +I   CK             G   R   V+    EM 
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKH------------GKYERAKEVF---AEML 322

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPD--EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
             G  PD  TY +L  LM+  K  D  E   I+ +M      P +  ++ +M  + ++GN
Sbjct: 323 RSGLSPDSTTYRSL--LMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGN 380

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            +     ++ +   G  PD+  YT+LI G   +    EA     EML++G    V+ YN 
Sbjct: 381 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNT 440

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLA 612
               L +       D+L  +M   G F  S  L 
Sbjct: 441 ILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLT 474


>gi|226492862|ref|NP_001141929.1| uncharacterized protein LOC100274078 [Zea mays]
 gi|194706478|gb|ACF87323.1| unknown [Zea mays]
 gi|414585156|tpg|DAA35727.1| TPA: hypothetical protein ZEAMMB73_571639 [Zea mays]
          Length = 442

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 170/394 (43%), Gaps = 42/394 (10%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPG--FAHNSRTYNSMMSILGRARQFETMV 265
           +L  + V+  L  + +  R A  FF W+    G      + T    + ILG+  +F    
Sbjct: 32  SLDASAVLKTLSLYANDWRRALDFFHWSASPAGANLPPTAATLARAVDILGKHFEFPLAT 91

Query: 266 SML---EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE-------LMNKYKFKAGVD 315
           S+L    + G+   L     +  +N  AAA     A+  FE       L ++  F   VD
Sbjct: 92  SLLLSHHDPGDPTFLR-PALRALLNRLAAANLIDDALHAFESTAASIGLCDEVSFHILVD 150

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            + C        ++ +   L F K    F P   T+ +LL GW +        ++W +M 
Sbjct: 151 AL-C-----DHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKAHAWARLRQLWFDMD 204

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK--------------------AKGPS 415
            +G   D+ +++I ++ L K GK   A K+F+ MK                    A+G  
Sbjct: 205 RRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRIDTVAYNTAIHAVGMAQGVD 264

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
             VR Y  M+   CK N A Y  +I  F    R    Y  +++M + GC PD LTY+   
Sbjct: 265 SAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQQMRKTGCKPDVLTYHCFF 324

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
           + +     P E + ++++M+  G +P + TY M++K + + G       VW  M  +G  
Sbjct: 325 QYLS---RPQEVLGLFEKMLERGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEEQGLS 381

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           PD  +Y  LI  L+ +     A KY E+ML KG+
Sbjct: 382 PDAFAYNALIDALLQKGMVDLARKYDEKMLAKGL 415



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 23/317 (7%)

Query: 187 VIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR 246
           +ID+      +  A +  C   +S +++VD L    H R       C+  D P F   ++
Sbjct: 122 LIDDALHAFESTAASIGLCD-EVSFHILVDAL--CDHRRVDEADHLCFGKDPPPFPPGTK 178

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N ++    +A  +  +  +  +M  +G+   + ++ I M+A A + +  KA  +F+ M
Sbjct: 179 THNLLLRGWAKAHAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEM 238

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNL 364
            +   +      N  +  +G ++    A  L+ ++      PN+ TY  ++  +C+    
Sbjct: 239 KQRGIRIDTVAYNTAIHAVGMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRF 298

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            E      +M   G KPDV+ ++   + L    +  + + LFE M  +G  P + +Y ++
Sbjct: 299 KEGYAFVQQMRKTGCKPDVLTYHCFFQYL---SRPQEVLGLFEKMLERGCQPRMDTYVML 355

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           I +F +            +G  R + IV+   K MEE+G  PD   YNALI  +  + M 
Sbjct: 356 IKRFGR------------WGFLRPVFIVW---KAMEEQGLSPDAFAYNALIDALLQKGMV 400

Query: 485 DEAVRIYKEMVRSGFKP 501
           D A +  ++M+  G  P
Sbjct: 401 DLARKYDEKMLAKGLSP 417



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 5/182 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   ++  YN+ +  +G A+  ++ V +  +M + G   ++ T+   +  F      K+ 
Sbjct: 242 GIRIDTVAYNTAIHAVGMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEG 301

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            A  + M K   K  V T +C  + L R   P+E   LF+K+  R   P + TY +L+  
Sbjct: 302 YAFVQQMRKTGCKPDVLTYHCFFQYLSR---PQEVLGLFEKMLERGCQPRMDTYVMLIKR 358

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + R   L     VW  M ++G  PD  A+N +++ LL+ G    A K  E M AKG SP 
Sbjct: 359 FGRWGFLRPVFIVWKAMEEQGLSPDAFAYNALIDALLQKGMVDLARKYDEKMLAKGLSPK 418

Query: 418 VR 419
            R
Sbjct: 419 PR 420



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            +  L+ G+        +  L  +M+ RG   D  +Y+  +  +     P +A +++KEM
Sbjct: 179 THNLLLRGWAKAHAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEM 238

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            + G +     YN  + +       +   +++ +M+  GC P+  +Y  +I     + R 
Sbjct: 239 KQRGIRIDTVAYNTAIHAVGMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRF 298

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
            E Y ++++M + G K  VL Y+ F   LSR
Sbjct: 299 KEGYAFVQQMRKTGCKPDVLTYHCFFQYLSR 329



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 58/111 (52%)

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D ++++ L+  +   +  DEA  +        F P   T+N++++ + +   +   R++W
Sbjct: 141 DEVSFHILVDALCDHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKAHAWARLRQLW 200

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +M RRG   D +SY++ +  L    +  +A+K  +EM ++G++   + YN
Sbjct: 201 FDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRIDTVAYN 251



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 69/168 (41%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           +  L+    + RR+D    L    +    PP   T+N L++            +++ +M 
Sbjct: 145 FHILVDALCDHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKAHAWARLRQLWFDMD 204

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
           R G    +H+Y++ M +  ++G      KV+ EM +RG   D  +Y   I  +       
Sbjct: 205 RRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRIDTVAYNTAIHAVGMAQGVD 264

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            A +   +M++ G K  +  YN       + GR        Q+MR +G
Sbjct: 265 SAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQQMRKTG 312


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 196/453 (43%), Gaps = 40/453 (8%)

Query: 167 ITSVSYKSTADPREIERVCKVIDEL-----FSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           + +VS  +   P    R C     +      SL++    VL    I +S    +  L  +
Sbjct: 5   LNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPNW 64

Query: 222 RHAR----------RPAF---RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +  +            AF    F    G KP     ++    ++  L +  +    + ++
Sbjct: 65  KIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQ----LLYDLCKTCKMRKAIKVM 120

Query: 269 EEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
           E M   G++    ++   +++         A+ + + M +Y +     T N L+  L   
Sbjct: 121 EMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMH 180

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
             L +  QLL   ++    PN  TY+ LL    + +   EA ++ +E+I KG KP++V++
Sbjct: 181 GNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSY 240

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N++L GL K G+  DA++LF  + +KG SPNV SY I++   C               N 
Sbjct: 241 NVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLC---------------NE 285

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R +    LL EM+     P  +TYN LI  + +    + A+ + +EM+R+ FKPT  +Y
Sbjct: 286 GRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSY 345

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N I+    +    ++  K  D+M+ R C P++ +Y   I  L  +    EA+  ++ +  
Sbjct: 346 NPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNA-IATLCEEGMVQEAFSIIQSLGN 404

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           K   +    Y      L R G +Y   +L  +M
Sbjct: 405 KQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEM 437



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 157/371 (42%), Gaps = 57/371 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  N+ TYNS++  L         + +L+ + +KGL+         NA+          
Sbjct: 162 GYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVP--------NAYT--------- 204

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGGW 358
                   Y F         LLE   + +   EA  L D++  +   PNL +Y VLL G 
Sbjct: 205 --------YSF---------LLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGL 247

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+     +A +++ E+  KGF P+VV++NI+L  L   G+  +A  L   M     SP+ 
Sbjct: 248 CKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPST 307

Query: 419 RSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y I+I                        K  A+ Y  +I      R++D+V   L +
Sbjct: 308 VTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQ 367

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  R C P+  TYNA+  L + + M  EA  I + +       T   Y +++ S  + GN
Sbjct: 368 MMYRHCNPNEGTYNAIATLCE-EGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGN 426

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                ++  EM + G  PD  +Y+ LI GL  +    EA +    M E+ +K    +YN 
Sbjct: 427 TYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM-EENIKLDTENYNS 485

Query: 579 FAADLSRAGRS 589
                 ++ R+
Sbjct: 486 LILGCCKSRRT 496



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 20/218 (9%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +DA    E M  KG  P+V   T +++  CK      TC         +M     +++ M
Sbjct: 79  NDAFFHLEFMVEKGQKPDVFQATQLLYDLCK------TC---------KMRKAIKVMEMM 123

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  PD  +Y  L+  +  +     A+++  +M   G+     TYN +++     GN 
Sbjct: 124 IGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNL 183

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               ++ D +I++G  P+  +Y+ L+     +  + EA K L+E++ KG K  ++ YN  
Sbjct: 184 TQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVL 243

Query: 580 AADLSRAGRS----YVLDELAQKMRFSGKFEVSNVLAR 613
              L + GR+     +  EL  K  FS      N+L R
Sbjct: 244 LTGLCKEGRTEDAMQLFRELPSK-GFSPNVVSYNILLR 280



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 52/291 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           GF+ N  +YN ++  L    ++E    +L EM G++   S  T+ I + +       + A
Sbjct: 267 GFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHA 326

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYT----- 352
           + + E M + +FK    + N ++  L + +         D++ +R   PN  TY      
Sbjct: 327 LEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATL 386

Query: 353 -----------------------------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
                                        +++   CR  N   A ++  EM   GF PD 
Sbjct: 387 CEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDS 446

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             ++ ++ GL   G  ++AI++F VM+                   K +   Y  LI G 
Sbjct: 447 FTYSSLIRGLCMEGMLNEAIEIFSVMEEN----------------IKLDTENYNSLILGC 490

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              RR D+  D+ + M  +G   +  TY  L++ +  +K  D A  + +E+
Sbjct: 491 CKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLREL 541


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 170/372 (45%), Gaps = 38/372 (10%)

Query: 228 AFRFF---CWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFK 283
           AF+FF    ++   P  +    ++  ++S L + + +  +  +  +M   G+     T  
Sbjct: 80  AFQFFHLMMYSNPTPPLS----SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135

Query: 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KH 342
           I +N         + +A+   + +  +   + T   L++ L       +A LLF ++ K 
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG------FKPDVVAHNIMLEGLLKI 396
             TPN  TY  L+ G CR  N+  A ++  EM++        FKP V++++I+++ L K 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456
            +  +A  LFE MK +G +P V SYT ++W+  K+                       L 
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKR-----------------------LF 292

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EM  +G  P+ +T+N LI ++  +    EA  + + M++ G  P + TYN +++ +   
Sbjct: 293 NEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLV 352

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G+    R+++  M  +GC PD   YTVLI G     +  EA K    ML+ G +  V  Y
Sbjct: 353 GDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 412

Query: 577 NKFAADLSRAGR 588
                 L + G+
Sbjct: 413 GALLTGLFQGGK 424



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 24/291 (8%)

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAG 368
           FK  V + + +++ L + +   EA+ LF+++K +  TP + +YT L+  W       EA 
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--W------EEAK 289

Query: 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           R++NEM+++G +P+VV  N++++ L K GK  +A  L EVM  +G  PN+ +Y  +I  F
Sbjct: 290 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGF 349

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C          + G  N  R     +L   M  +GC PD + Y  LI         +EA+
Sbjct: 350 C----------LVGDLNSAR-----ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAM 394

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           ++Y  M++ G +P + TY  ++   FQ G     +K++  M   G   D   Y + + GL
Sbjct: 395 KLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGL 454

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
                  EA +   ++    +K  +  +N     L +AG+     EL +K+
Sbjct: 455 CKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKL 505



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 171/381 (44%), Gaps = 39/381 (10%)

Query: 206 GIN-----LSHNLVVDVL--ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA 258
           GIN     +S+++++D L  +R     R  F      G  P       +Y S+M      
Sbjct: 235 GINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI----SYTSLM------ 284

Query: 259 RQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
             +E    +  EM  +G+  ++ TF + ++      +  +A  + E+M +      + T 
Sbjct: 285 --WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTY 342

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
           N L+E          A+ LF  +  +   P++  YTVL+ G+C+   + EA +++N M+ 
Sbjct: 343 NSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ 402

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
            G +PDV  +  +L GL + GK  DA KLF VMK  G   ++  Y I +   CK      
Sbjct: 403 VGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNG---- 458

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
            CL        ++   Y++  ++E   C  DGL         K  K+ + A  +++++ +
Sbjct: 459 -CLFEAMELFNKLK-SYNIKLDIECFNCLIDGLC--------KAGKL-ETAWELFEKLPQ 507

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
              +P + TYN+++  + + G       ++ +M + GC PD  +Y  LI G     +  +
Sbjct: 508 EELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEK 567

Query: 557 AYKYLEEMLEKGMKAPVLDYN 577
             + L  M+++ +    LD N
Sbjct: 568 VVELLHMMVQRDVS---LDVN 585


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 181/407 (44%), Gaps = 23/407 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N  TY  ++ ++ ++ Q    + +L +M E+ + L    + I ++          A
Sbjct: 207 GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNA 266

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F  M    FKA +     L+     + +    A+LL D +K + TP++  ++ L+  
Sbjct: 267 FNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDC 326

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   L EA  +  EMI +G  PD V +  +++G  K  +   A  + ++M +KG  PN
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 418 VRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLK 457
           +R++ I+I  +CK N                       Y  LI GF    ++++  +L +
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM  R   PD ++Y  L+  +     P++A+ I++++ +S  +  I  YN+I+       
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +    ++  +  +G  PD  +Y ++IGGL  +    EA     +M E G       YN
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYR 624
                    G +    +L ++++  G F V     R+A +T  R+ +
Sbjct: 567 ILIRAHLGEGDATKSAKLIEEIKRCG-FSVDASTLRFALSTLARMLK 612



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 164/370 (44%), Gaps = 17/370 (4%)

Query: 232 FCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFA 290
            C   +  G AHN  T + M++   R R+     S + ++ + G      TF   +N   
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLT 349
                 +A+ + + M +   K  + T+N L+  L  +    +A LL D++ +  F PN  
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213

Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
           TY  +L   C+      A  +  +M ++  K D V ++I+++GL K G   +A  LF  M
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 273

Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
           + KG                K +  +YT LI GF    R D    LL++M +R   PD +
Sbjct: 274 EIKG---------------FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
            ++ALI     +    EA  ++KEM++ G  P   TY  ++  + +    +    + D M
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           + +GC P+  ++ +LI G    +   +  +   +M  +G+ A  + YN         G+ 
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 590 YVLDELAQKM 599
            V  EL Q+M
Sbjct: 439 EVAKELFQEM 448



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 173/375 (46%), Gaps = 26/375 (6%)

Query: 238 KPGFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
           K G+  ++ T++++++ L   GR  +   +V  + EMG K   ++ T    +N      +
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP--TLITLNALVNGLCLNGK 192

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTV 353
              AV + + M +  F+    T   +L+ + +S     A  L  K++ R    +   Y++
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           ++ G C+  +L  A  ++NEM  KGFK D++ +  ++ G    G+  D  KL   M  + 
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312

Query: 414 PSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVY 453
            +P+V +++ +I  F K+                    +   YT LI GF    ++D   
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
            +L  M  +GC P+  T+N LI       + D+ + ++++M   G      TYN +++ +
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
            + G  E+ ++++ EM+ R   PD  SY +L+ GL       +A +  E++ +  M+  +
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDI 492

Query: 574 LDYNKFAADLSRAGR 588
             YN     +  A +
Sbjct: 493 GIYNIIIHGMCNASK 507



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 157/336 (46%), Gaps = 11/336 (3%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N RT+N +++   +A   +  + +  +M  +G+++   T+   +  F    + + A
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             +F+ M   + +  + +   LL+ L  +  P++A  +F+K+ K +   ++  Y +++ G
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C    + +A  ++  +  KG KPDV  +NIM+ GL K G  S+A  LF  M+  G SPN
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561

Query: 418 VRSYTIMIWKFCKQNAAVYTCLIT------GFG-NRRRMDIVYDLLKEMEERGCPPDGLT 470
             +Y I+I     +  A  +  +       GF  +   +      L  M + G  PD  T
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFT 621

Query: 471 YNALIKLMKIQKMPD--EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +  L++   +++     +A  ++K M   G+KP + TYN ++K             V D+
Sbjct: 622 FTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQ 681

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           M  RGC P+  + +  I GL  QD  G A   L +M
Sbjct: 682 MFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKM 717



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 169/374 (45%), Gaps = 45/374 (12%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G + ++ TY S++    +  Q +    ML+ M  KG   ++ TF I +N +  A      
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406

Query: 299 VAIFELMNKYKFKAGVDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355
           + +F  M+     A   T N L++    LG+ ++ KE  L  + +  R  P++ +Y +LL
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE--LFQEMVSRRVRPDIVSYKILL 464

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      +A  ++ ++     + D+  +NI++ G+    K  DA  LF  +  KG  
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P+V++Y IMI   CK+            G+    D+++   ++MEE G  P+G TYN LI
Sbjct: 525 PDVKTYNIMIGGLCKK------------GSLSEADLLF---RKMEEDGHSPNGCTYNILI 569

Query: 476 KL-------MKIQKMPDE---------------AVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +         K  K+ +E               A+     M+++G +P + T+  +++ +
Sbjct: 570 RAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPF 629

Query: 514 FQTGNYEM--GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
               N  +     ++  M   G  P+  +Y  +I GL++ +   +    L++M E+G + 
Sbjct: 630 CLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQP 689

Query: 572 PVLDYNKFAADLSR 585
             +  + F + L +
Sbjct: 690 NAVTKSTFISGLCK 703



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 150/341 (43%), Gaps = 29/341 (8%)

Query: 229 FRFFCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
            R FC+AG             K     +   +++++    +  +      + +EM ++G+
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348

Query: 277 -LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
                T+   ++ F    +  KA  + +LM        + T N L+    ++ L  +   
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLE 408

Query: 336 LFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
           LF K+  R    +  TY  L+ G+C +  L  A  ++ EM+ +  +PD+V++ I+L+GL 
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
             G+   A+++FE ++      ++  Y I+I   C               N  ++D  +D
Sbjct: 469 DNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC---------------NASKVDDAWD 513

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           L   +  +G  PD  TYN +I  +  +    EA  ++++M   G  P   TYN++++++ 
Sbjct: 514 LFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHL 573

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G+     K+ +E+ R G   D ++    +  L    ++G
Sbjct: 574 GEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAG 614



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 23/240 (9%)

Query: 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV----RSYTI 423
           GRV++ + D   K  V     +  G++ I K  DA+ LF+ M    P P +    R +++
Sbjct: 25  GRVFSSVSDG--KGKVSYRERLRSGIVDI-KEDDAVDLFQEMTRSRPRPRLIDFSRLFSV 81

Query: 424 --------MIWKFCKQ--------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
                   ++   CKQ        N    + +I      R++ + +  + ++ + G  PD
Sbjct: 82  VARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPD 141

Query: 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527
            +T++ LI  + ++    EA+ +   MV  G KPT+ T N ++      G       + D
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201

Query: 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            M+  G  P++ +Y  ++  +    ++  A + L +M E+ +K   + Y+     L + G
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 169/373 (45%), Gaps = 24/373 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TY+S++  L +AR  +   + L +M  KG+L    T+   +  +++  + K+A
Sbjct: 251 GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 310

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           V +F+ M +      V  +N L+ +L +    KEA+ +FD +  +   P++ +YT++L G
Sbjct: 311 VRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNG 370

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     L++   +++ M+  G  P +   N++++     G    A+ +F  M+  G  P+
Sbjct: 371 YATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPH 430

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I   C+                     +   Y CLI GF     +    +L+ 
Sbjct: 431 VVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELIS 490

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           E+   G   D + + ++I  L K+ ++ D A  I+   V  G  P    YNM+M  Y   
Sbjct: 491 EIMNNGMRLDIVFFGSIINNLCKLGRVMD-AQNIFDLTVNVGLHPDAVVYNMLMDGYCLV 549

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E   +V+D M+  G  P+   Y  L+ G     R  E      EML+KG+K   + Y
Sbjct: 550 GKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 609

Query: 577 NKFAADLSRAGRS 589
           N     L  AGR+
Sbjct: 610 NIIIDGLFEAGRT 622



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 179/389 (46%), Gaps = 21/389 (5%)

Query: 206 GINLSHNLVVDVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSIL---GRARQ 260
           G+ +   +   +L+ F  A+R   A         + G   +  +YN ++  L   G++ Q
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
            + ++ M+ E G      +  +   ++ F    +  KA  +F+ M +      + T + +
Sbjct: 203 ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 262

Query: 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +  L +++   +A+    ++ ++   P+  TY  L+ G+       EA RV+ EM  +  
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 322

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
            PDVVA N ++  L K GK  +A  +F+ M  KG +P+V SYTIM+  +     A   CL
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGY-----ATKGCL 377

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +           + DL   M   G  P   T+N LIK      M D+A+ I+ EM   G 
Sbjct: 378 VD----------MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP + TY  ++ +  + G  +   + +++MI +G  PD  +Y  LI G  +     +A +
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKE 487

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + E++  GM+  ++ +     +L + GR
Sbjct: 488 LISEIMNNGMRLDIVFFGSIINNLCKLGR 516



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 165/378 (43%), Gaps = 24/378 (6%)

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           N++M  L +  + +    + + M  KG    + ++ I +N +A          +F+LM  
Sbjct: 330 NTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLG 389

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLME 366
                 + T N L++      +  +A ++F++++ H   P++ TY  ++   CR+  + +
Sbjct: 390 DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449

Query: 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426
           A   +N+MID+G  PD  A++ +++G    G    A +L   +   G   ++  +  +I 
Sbjct: 450 AMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509

Query: 427 KFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
             CK                     +A VY  L+ G+    +M+    +   M   G  P
Sbjct: 510 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEP 569

Query: 467 DGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           + + Y  L+    KI ++ DE + +++EM++ G KP+   YN+I+   F+ G     +  
Sbjct: 570 NVVGYGTLVNGYCKIGRI-DEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 628

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + EM   G   +  +Y++++ GL       EA    +E+    +K  ++  N   A + +
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 586 AGRSYVLDELAQKMRFSG 603
             R     +L   +  SG
Sbjct: 689 TRRVEEAKDLFASISRSG 706



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 145/332 (43%), Gaps = 19/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TY ++++ L R  + +  +    +M ++G++  +  +   +  F       KA
Sbjct: 426 GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA 485

Query: 299 VAIF-ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLLG 356
             +  E+MN    +  +     ++ NL +     +AQ +FD  +     P+   Y +L+ 
Sbjct: 486 KELISEIMNN-GMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 544

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C V  + +A RV++ M+  G +P+VV +  ++ G  KIG+  + + LF  M  KG  P
Sbjct: 545 GYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
           +   Y I               +I G     R         EM E G   +  TY+ +++
Sbjct: 605 STILYNI---------------IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLR 649

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +   +  DEA+ ++KE+     K  I T N ++   FQT   E  + ++  + R G  P
Sbjct: 650 GLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
              +Y+++I  LI +    EA      M   G
Sbjct: 710 CAVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 741



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 128/303 (42%), Gaps = 17/303 (5%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++ E+   G+ L +  F   +N          A  IF+L             N L++   
Sbjct: 488 LISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC 547

Query: 326 RSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                ++A  +FD +      PN+  Y  L+ G+C++  + E   ++ EM+ KG KP  +
Sbjct: 548 LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 607

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +NI+++GL + G+   A   F  M   G + N  +Y+I               ++ G  
Sbjct: 608 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSI---------------VLRGLF 652

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
             R  D    L KE+       D +T N +I  M   +  +EA  ++  + RSG  P   
Sbjct: 653 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY++++ +  + G  E    ++  M   GC PD      ++  L+ ++    A  YL ++
Sbjct: 713 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 772

Query: 565 LEK 567
            E+
Sbjct: 773 DER 775



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 28/299 (9%)

Query: 330 PKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           P  A  LF++   R       +P   TY +L+    R      A   + +++  G + D 
Sbjct: 89  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 148

Query: 384 VAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  + +L+G  +  +  +A+  L       G  P+V SY I++   C Q           
Sbjct: 149 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQ----------- 197

Query: 443 FGNRRRMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   + D   DLL+ M E G  C PD + YN +I     +   ++A  ++KEMV+ G  
Sbjct: 198 -GKSGQAD---DLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP 253

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY+ ++ +  +    +       +M+ +G  PD+ +Y  LI G  S  +  EA + 
Sbjct: 254 PDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRV 313

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRFSGKFEVSNVLARWA 615
            +EM  + +   V+  N     L + G+      V D +A K +    F  + +L  +A
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372


>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 196/453 (43%), Gaps = 40/453 (8%)

Query: 167 ITSVSYKSTADPREIERVCKVIDEL-----FSLDRNMEAVLDECGINLSHNLVVDVLERF 221
           + +VS  +   P    R C     +      SL++    VL    I +S    +  L  +
Sbjct: 5   LNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPNW 64

Query: 222 RHAR----------RPAF---RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           +  +            AF    F    G KP     ++    ++  L +  +    + ++
Sbjct: 65  KIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQ----LLYDLCKTCKMRKAIKVM 120

Query: 269 EEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-R 326
           E M   G++    ++   +++         A+ + + M +Y +     T N L+  L   
Sbjct: 121 EMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMH 180

Query: 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
             L +  QLL   ++    PN  TY+ LL    + +   EA ++ +E+I KG KP++V++
Sbjct: 181 GNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSY 240

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N++L GL K G+  DA++LF  + +KG SPNV SY I++   C               N 
Sbjct: 241 NVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLC---------------NE 285

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
            R +    LL EM+     P  +TYN LI  + +    + A+ + +EM+R+ FKPT  +Y
Sbjct: 286 GRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSY 345

Query: 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           N I+    +    ++  K  D+M+ R C P++ +Y   I  L  +    EA+  ++ +  
Sbjct: 346 NPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNA-IATLCEEGMVQEAFSIIQSLGN 404

Query: 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           K   +    Y      L R G +Y   +L  +M
Sbjct: 405 KQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEM 437



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 157/371 (42%), Gaps = 57/371 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G+  N+ TYNS++  L         + +L+ + +KGL+         NA+          
Sbjct: 162 GYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVP--------NAYT--------- 204

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGGW 358
                   Y F         LLE   + +   EA  L D++  +   PNL +Y VLL G 
Sbjct: 205 --------YSF---------LLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGL 247

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C+     +A +++ E+  KGF P+VV++NI+L  L   G+  +A  L   M     SP+ 
Sbjct: 248 CKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPST 307

Query: 419 RSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y I+I                        K  A+ Y  +I      R++D+V   L +
Sbjct: 308 VTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQ 367

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  R C P+  TYNA+  L + + M  EA  I + +       T   Y +++ S  + GN
Sbjct: 368 MMYRHCNPNEGTYNAIATLCE-EGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGN 426

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                ++  EM + G  PD  +Y+ LI GL  +    EA +    M E+ +K    +YN 
Sbjct: 427 TYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM-EENIKLDTENYNS 485

Query: 579 FAADLSRAGRS 589
                 ++ R+
Sbjct: 486 LILGCCKSRRT 496



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 20/218 (9%)

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +DA    E M  KG  P+V   T +++  CK      TC         +M     +++ M
Sbjct: 79  NDAFFHLEFMVEKGQKPDVFQATQLLYDLCK------TC---------KMRKAIKVMEMM 123

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  PD  +Y  L+  +  +     A+++  +M   G+     TYN +++     GN 
Sbjct: 124 IGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNL 183

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               ++ D +I++G  P+  +Y+ L+     +  + EA K L+E++ KG K  ++ YN  
Sbjct: 184 TQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVL 243

Query: 580 AADLSRAGRS----YVLDELAQKMRFSGKFEVSNVLAR 613
              L + GR+     +  EL  K  FS      N+L R
Sbjct: 244 LTGLCKEGRTEDAMQLFRELPSK-GFSPNVVSYNILLR 280



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 52/291 (17%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           GF+ N  +YN ++  L    ++E    +L EM G++   S  T+ I + +       + A
Sbjct: 267 GFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHA 326

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYT----- 352
           + + E M + +FK    + N ++  L + +         D++ +R   PN  TY      
Sbjct: 327 LEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATL 386

Query: 353 -----------------------------VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
                                        +++   CR  N   A ++  EM   GF PD 
Sbjct: 387 CEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDS 446

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             ++ ++ GL   G  ++AI++F VM+                   K +   Y  LI G 
Sbjct: 447 FTYSSLIRGLCMEGMLNEAIEIFSVMEEN----------------IKLDTENYNSLILGC 490

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              RR D+  D+ + M  +G   +  TY  L++ +  +K  D A  + +E+
Sbjct: 491 CKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLREL 541


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 194/455 (42%), Gaps = 41/455 (9%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           V +VL + +     +F FF WA  +   +H+  T+  ++  L + R+F++  S+L ++  
Sbjct: 84  VKNVLLKIQKDYLLSFEFFNWAKTRNPASHSLETHAIVLHTLTKNRKFKSAESILRDVLV 143

Query: 274 KGLLSM-------------------ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314
            G + +                     F      FA  K+ + A   F  M  Y F   V
Sbjct: 144 NGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTV 203

Query: 315 DTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373
           ++ N  + +L G+ ++    +   +  + + +PN  T  +++ G+CR   L +   +  +
Sbjct: 204 ESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQD 263

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-- 431
           M   GF+   V++N ++ G  + G  S A+KL  +M   G  PNV ++  +I  FC+   
Sbjct: 264 MERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVK 323

Query: 432 ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
                             N   Y  LI G+  +   ++ +   ++M   G   D LTYN 
Sbjct: 324 LQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNT 383

Query: 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
           LI  +  Q    +A +  KE+ +    P   T++ ++       N + G +++  MIR G
Sbjct: 384 LILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSG 443

Query: 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
           C P++ ++ +LI      +    A + L EM+ + +       ++    L+  G+  ++ 
Sbjct: 444 CHPNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVK 503

Query: 594 ELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
           EL Q+M    KF    +    AE     V+ KD +
Sbjct: 504 ELLQEME-GKKFLQEPLDNCEAECINQNVFIKDTV 537


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 165/363 (45%), Gaps = 17/363 (4%)

Query: 240  GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
            GF     TY S+++ LG+    E + S+  EM ++G   +++ +   ++A    +   +A
Sbjct: 1043 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQA 1102

Query: 299  VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
            + I + M        + T N L+  L      ++A+  L + ++    PN  +YT L+ G
Sbjct: 1103 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 1162

Query: 358  WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            +C    LM A  +  EM+ +G  PDVV    ++ GL+  GK S+A+ + E M  +   P+
Sbjct: 1163 FCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 1222

Query: 418  VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
            V  Y ++I   CK               +R +    ++L+EM E+   PD   Y  LI  
Sbjct: 1223 VNIYNVLISGLCK---------------KRMLPAAKNILEEMLEKNVQPDEFVYATLIDG 1267

Query: 478  MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
                +   +A +I++ M   G  P I + N ++K Y Q G           M + GC PD
Sbjct: 1268 FIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPD 1327

Query: 538  DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
            + +YT +I G   Q     A ++L +M+++  K  V+ Y+       + G +   + L  
Sbjct: 1328 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFA 1387

Query: 598  KMR 600
             M+
Sbjct: 1388 NMQ 1390



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 126/279 (45%), Gaps = 25/279 (8%)

Query: 319  CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
            C   ++GR  L     LL +   + F P L TY  L+    +  +L + G ++ EM  +G
Sbjct: 1024 CRRGDMGRGLL-----LLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG 1078

Query: 379  FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------- 431
            F P+V  +N +++ L      + A+ + + M A G  P++ ++  +I   C +       
Sbjct: 1079 FSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 1138

Query: 432  -------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                         N   YT LI GF  R  + +  DLL EM  RG  PD +T+ ALI  +
Sbjct: 1139 HFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGL 1198

Query: 479  KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             +     EA+ + ++M      P ++ YN+++    +       + + +EM+ +   PD+
Sbjct: 1199 VVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDE 1258

Query: 539  NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
              Y  LI G I  +  G+A K  E M  KG+   ++  N
Sbjct: 1259 FVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCN 1297



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 21/311 (6%)

Query: 244  NSRTYNSMMSILGRARQFETMVS---MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
            N  +Y  +  I G   + E MV+   ++E MG      + TF   ++    A +  +A+ 
Sbjct: 1152 NQLSYTPL--IHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALI 1209

Query: 301  IFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
            + E M + +    V+  N L+  L + + LP    +L + L+    P+   Y  L+ G+ 
Sbjct: 1210 VREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFI 1269

Query: 360  RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            R +NL +A +++  M  KG  PD+V+ N M++G  + G  S+AI     M+  G      
Sbjct: 1270 RSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG------ 1323

Query: 420  SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                     C  +   YT +I+G+  +  ++     L +M +R C P+ +TY++LI    
Sbjct: 1324 ---------CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC 1374

Query: 480  IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 D A  ++  M      P + TY +++ S F+          ++ M+   C P+D 
Sbjct: 1375 KTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDV 1434

Query: 540  SYTVLIGGLIS 550
            +   L+ GL S
Sbjct: 1435 TLHYLVNGLTS 1445



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 19/257 (7%)

Query: 346  PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            P++  Y VL+ G+CR  ++     +  EM   GF P +V +  ++  L K G       L
Sbjct: 1011 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSL 1070

Query: 406  FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
            F  M+ +G SPNV+ Y  +I   C   +A    +I               LK+M   GC 
Sbjct: 1071 FLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVI---------------LKQMFASGCD 1115

Query: 466  PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
            PD +T+N LI  +  +    +A    +E +R    P   +Y  ++  +   G   +   +
Sbjct: 1116 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1175

Query: 526  WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
              EM+ RG  PD  ++  LI GL+   +  EA    E+M E+ +   V  YN   + L +
Sbjct: 1176 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1235

Query: 586  ----AGRSYVLDELAQK 598
                     +L+E+ +K
Sbjct: 1236 KRMLPAAKNILEEMLEK 1252



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 136/351 (38%), Gaps = 22/351 (6%)

Query: 259  RQFETMVSMLEEMGEKGLLSMETF-KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317
            R+ E  + ++E     G +    F  + ++ +    +  + + +   M    F   + T 
Sbjct: 992  RRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTY 1051

Query: 318  NCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
              L+  LG+   L K   L  +  K  F+PN+  Y  ++   C  ++  +A  +  +M  
Sbjct: 1052 GSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFA 1111

Query: 377  KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----- 431
             G  PD++  N ++ GL   G    A         +  +PN  SYT +I  FC +     
Sbjct: 1112 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMV 1171

Query: 432  ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                           +   +  LI G     ++     + ++M ER   PD   YN LI 
Sbjct: 1172 ASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 1231

Query: 477  LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             +  ++M   A  I +EM+    +P    Y  ++  + ++ N    RK+++ M  +G CP
Sbjct: 1232 GLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCP 1291

Query: 537  DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            D  S   +I G        EA   +  M + G       Y    +  ++ G
Sbjct: 1292 DIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQG 1342



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 19/304 (6%)

Query: 288  AFAAAKERKKAVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRF 344
            A+A A    KA  + E +  +Y     V   N LL+ L   +   +A+ L+D++  K   
Sbjct: 916  AYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSG 975

Query: 345  TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
              N +T  VL+ G C  + + E  ++       G  P VV +N++++G  + G     + 
Sbjct: 976  ADNYST-CVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLL 1034

Query: 405  LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
            L   M+  G  P +                 Y  LI   G +  ++ +  L  EM +RG 
Sbjct: 1035 LLGEMETNGFLPTL---------------VTYGSLINWLGKKGDLEKIGSLFLEMRKRGF 1079

Query: 465  PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             P+   YN++I  +   +   +A+ I K+M  SG  P I T+N ++      G+      
Sbjct: 1080 SPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEH 1139

Query: 525  VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
               E IRR   P+  SYT LI G   +     A   L EM+ +G    V+ +      L 
Sbjct: 1140 FLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLV 1199

Query: 585  RAGR 588
             AG+
Sbjct: 1200 VAGK 1203



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 15/238 (6%)

Query: 366  EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            +A ++++EM+ K    D  +  +++ GL    +  + +KL E     G  P+V  Y ++I
Sbjct: 961  DARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLI 1020

Query: 426  WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              +C+               R  M     LL EME  G  P  +TY +LI  +  +   +
Sbjct: 1021 DGYCR---------------RGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLE 1065

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +   ++ EM + GF P +  YN ++ +     +      +  +M   GC PD  ++  LI
Sbjct: 1066 KIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLI 1125

Query: 546  GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             GL  +    +A  +L E + + +    L Y          G   V  +L  +M   G
Sbjct: 1126 TGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRG 1183



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 114/307 (37%), Gaps = 37/307 (12%)

Query: 248  YNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMN 306
            YN ++S L + R      ++LEEM EK +   E  +   ++ F  ++    A  IFE M 
Sbjct: 1226 YNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 1285

Query: 307  KYKFKAGVDTINCLLENLGRSKLPKEAQL------------------------------- 335
                   + + N +++   +  +  EA L                               
Sbjct: 1286 HKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLN 1345

Query: 336  -----LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
                 L D +K +  PN+ TY+ L+ G+C+  +   A  ++  M  +   P+VV + I++
Sbjct: 1346 GALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILI 1405

Query: 391  EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450
              L K  K   A   FE M     SPN  +   ++         V   +          D
Sbjct: 1406 GSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKD 1465

Query: 451  IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
             +  + K++      P    YNA+I  +    M  EA+     M + G+ P   T+  ++
Sbjct: 1466 ALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLL 1525

Query: 511  KSYFQTG 517
              +   G
Sbjct: 1526 YGFCSVG 1532


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 177/361 (49%), Gaps = 24/361 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAI 301
           N   Y ++M+ L +    E  +S+L  M E+G     + T+ I ++A         A+ +
Sbjct: 167 NEVMYGTVMNGLSKRGHTEKTLSLLRIM-EQGNTKPDVRTYSIVIDALCKDINLDAAINL 225

Query: 302 FELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
              M +      + T N L++ L +  +  K   LL + +     PN+ T+++L+ G C+
Sbjct: 226 LNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCK 285

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              + +A  V   MI+KG +PD++ ++ +++G    G+   A ++F V++ KG  PN+ S
Sbjct: 286 EGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFS 345

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMK 479
           Y+I+I  +CK               ++ +     L  E+ ++G  PD +TY+ ++  L++
Sbjct: 346 YSILINGYCK---------------KKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
           + ++ D A +I+ EM+R G  P I  ++ ++  YF+ G  E    ++ ++ R     + +
Sbjct: 391 VGRIGD-AKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNIS 449

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            YTV+I GL   DR  EA+   E++   G+   V  YN       R G   + DE+   +
Sbjct: 450 FYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREG---LFDEVKGIL 506

Query: 600 R 600
           R
Sbjct: 507 R 507



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 160/327 (48%), Gaps = 22/327 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TYNS++  L +  Q+E + ++L EM    +  ++ TF I ++      + + A  + 
Sbjct: 237 NIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVM 296

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M +   +  + T + +++          A+ +F+ L+ +   PN+ +Y++L+ G+C+ 
Sbjct: 297 RHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKK 356

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           KNL +A +++ E+  KG KPD V ++ +L GL+++G+  DA K+F+ M   GP+P++  +
Sbjct: 357 KNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLH 416

Query: 422 TIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           + +++ + K                     N + YT +I G     R+   + + +++  
Sbjct: 417 STLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPS 476

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD  TYN +I     + + DE   I ++M  +G      TYN+IM+ +F++     
Sbjct: 477 IGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISE 536

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGL 548
                 EM  RG   D  +  VLI  L
Sbjct: 537 IVSFMKEMAGRGFSFDATTTGVLINVL 563



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 161/368 (43%), Gaps = 57/368 (15%)

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           P     S+ + +M+++    + +  +VS+  EM   G+ +S     I  N++        
Sbjct: 60  PSVIDFSKLFKTMINM----KHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDC 115

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL----------------- 340
           A ++  +  K      V T N LL  L       +A +LF KL                 
Sbjct: 116 AFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVM 175

Query: 341 --------------------KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380
                               +    P++ TY++++   C+  NL  A  + NEM  K   
Sbjct: 176 NGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIP 235

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P++  +N +++GL K+G+      L   M     +PNV +++I+I   CK+         
Sbjct: 236 PNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEG-------- 287

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
                  +++   ++++ M E+G  PD +TY+A++    ++   D A R++  +   G K
Sbjct: 288 -------KVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIK 340

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P I +Y++++  Y +  N     +++ E+ ++G  PD  +Y+ ++ GLI   R G+A K 
Sbjct: 341 PNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKI 400

Query: 561 LEEMLEKG 568
            +EML  G
Sbjct: 401 FDEMLRVG 408



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 15/281 (5%)

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLG 356
           AV++F  M + K    V   + L + +   K       LF +++    P + +   ++  
Sbjct: 46  AVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTN 105

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            +C    +  A  V    +  G   +VV  N +L GL    K +DA+ LF+ +       
Sbjct: 106 SYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKL------- 158

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
            VR       K C+ N  +Y  ++ G   R   +    LL+ ME+    PD  TY+ +I 
Sbjct: 159 -VRE------KICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVID 211

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
            +      D A+ +  EM +    P I TYN ++    + G +E  + +  EM+     P
Sbjct: 212 ALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINP 271

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           + +++++LI GL  + +  +A + +  M+EKG++  ++ Y+
Sbjct: 272 NVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYS 312



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 124/306 (40%), Gaps = 62/306 (20%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  T++ ++  L +  + E    ++  M EKG+   + T+   M+ +    +  +A  +F
Sbjct: 272 NVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVF 331

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            ++     K  + + + L+    + K   +A  LF ++  +   P+  TY+ +L G   V
Sbjct: 332 NVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEV 391

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF--------------- 406
             + +A ++++EM+  G  PD+  H+ +L G  K G   +A+ LF               
Sbjct: 392 GRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFY 451

Query: 407 --------------------EVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
                               E + + G  P+VR+Y +MI  FC++               
Sbjct: 452 TVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMED 511

Query: 432 -----NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK-----IQ 481
                N   Y  ++ GF    ++  +   +KEM  RG   D  T   LI ++K     + 
Sbjct: 512 NGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVD 571

Query: 482 KMPDEA 487
            +PD +
Sbjct: 572 MIPDHS 577



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/260 (18%), Positives = 106/260 (40%), Gaps = 21/260 (8%)

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
           V  L +A  +++ M+     P V+  + + + ++ +   S  + LF  M+  G   +   
Sbjct: 40  VSCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSI 99

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITG-FGNRRRMDIVYDLLKEM 459
             I+   +C +                    N   +  L+ G F   +  D V    K +
Sbjct: 100 LNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLV 159

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
            E+ C P+ + Y  ++  +  +   ++ + + + M +   KP + TY++++ +  +  N 
Sbjct: 160 REKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINL 219

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
           +    + +EM ++   P+  +Y  LI GL    +  +    L EM+   +   V  ++  
Sbjct: 220 DAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279

Query: 580 AADLSRAGRSYVLDELAQKM 599
              L + G+    DE+ + M
Sbjct: 280 IDGLCKEGKVEDADEVMRHM 299


>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 451

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 164/375 (43%), Gaps = 21/375 (5%)

Query: 199 EAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRA 258
           E  L++    ++  LV  VL     +   + RFF W+  +  +   S  Y  ++ IL ++
Sbjct: 58  ERTLNKLNAPVTSELVFRVLRACSRSPTESLRFFNWS--RAYYTPTSIEYEELIKILAKS 115

Query: 259 RQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           +++ +M  ++ +M ++     +S ET +  +  +  +    +AV +F   N    +  VD
Sbjct: 116 KRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVD 175

Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
             N LL  L   KL   A  L  +L  +   PN TTY+VL+ GWC      EA     EM
Sbjct: 176 IYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEM 235

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
             KGF P V   ++++EGLL  G    A ++   M  +G  P+V +              
Sbjct: 236 SKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNT-------------- 281

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            + CLI    N   +D   D+   + + G  PD  +Y  LI  +      DEA ++    
Sbjct: 282 -FNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLNNS 340

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           +  G KP    Y  I+K   + G ++     + EM  +G  P+   YT+LI       + 
Sbjct: 341 IEDGHKPFPGLYAPIIKGMCRRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKY 400

Query: 555 GEAYKYLEEMLEKGM 569
            EA  YL EM E G+
Sbjct: 401 VEAANYLVEMTEMGL 415



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 35/262 (13%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--------LSMETFKIAMNA--F 289
           G A N  TY+ +++      +F+     LEEM +KG         L +E     +NA  F
Sbjct: 204 GLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGL---LNAGYF 260

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNL 348
            +AKE      +F+ M+K  F   V+T NCL+E +  S ++     + +   K  F P++
Sbjct: 261 ESAKE-----MVFK-MSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDI 314

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            +Y +L+    +V  + EA ++ N  I+ G KP    +  +++G+ + G+  DA   F  
Sbjct: 315 NSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFPGLYAPIIKGMCRRGQFDDAFCFFGE 374

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           MK KG  PN                 VYT LIT  G   +     + L EM E G  P  
Sbjct: 375 MKVKGHPPN---------------RPVYTMLITMCGRGGKYVEAANYLVEMTEMGLTPIS 419

Query: 469 LTYNALIKLMKIQKMPDEAVRI 490
             ++ +   +K     D A RI
Sbjct: 420 RCFDMVTDGLKNCGKHDLAKRI 441



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 7/204 (3%)

Query: 405 LFEVMKAKGPSPNVRSYTIMIWK--FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           +F V++A   SP   S     W   +    +  Y  LI      +R   ++ L+ +M+++
Sbjct: 73  VFRVLRACSRSPT-ESLRFFNWSRAYYTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQ 131

Query: 463 GCPPDGL---TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
             P   +   T  ++I+      + D+AV ++ +      +  +  YN ++ +  +   +
Sbjct: 132 N-PQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALCEVKLF 190

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
                +   +IR+G  P+  +Y+VL+ G  S  +  EA  +LEEM +KG   PV   +  
Sbjct: 191 HGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLL 250

Query: 580 AADLSRAGRSYVLDELAQKMRFSG 603
              L  AG      E+  KM   G
Sbjct: 251 IEGLLNAGYFESAKEMVFKMSKEG 274



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 88/209 (42%), Gaps = 13/209 (6%)

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
           + P  + +  +++ L K  + S   KL   MK + P  ++ S T+               
Sbjct: 98  YTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSISSETV-------------RS 144

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           +I  +G    +D   ++  +     C  +   YN+L+  +   K+   A  + + ++R G
Sbjct: 145 IIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKG 204

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P   TY++++  +   G ++  +   +EM ++G  P      +LI GL++      A 
Sbjct: 205 LAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAK 264

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           + + +M ++G    V  +N     +  +G
Sbjct: 265 EMVFKMSKEGFVPDVNTFNCLIEAICNSG 293


>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
          Length = 610

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 161/358 (44%), Gaps = 38/358 (10%)

Query: 224 ARRP-----AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS 278
           ARRP     AFR     G +P       TY ++++ L   R F+T+  +L E+ + GL  
Sbjct: 92  ARRPHQAHSAFRHLVDDGHRPSLV----TYTTLLAALTSQRAFDTIPWLLAEVEDAGLRP 147

Query: 279 METFKIAM-NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
              F  A+ NA   A+   +A   F  M     +    T N L++  G +  P+E+Q +F
Sbjct: 148 DSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVF 207

Query: 338 DKLKHRFT-------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
           D +            PNLTTY +L+  WC    L EA RV   M   G  PDVV +N + 
Sbjct: 208 DMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLA 267

Query: 391 EGLLKIGKRSDAIKLF-EVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
               K  +   A +L  E+ +  G   + R++ I++  +C++                  
Sbjct: 268 SAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGV 327

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N  V+  L+ GF +   M  V D+L  ME+ G  PD +TY+  +  +       + ++
Sbjct: 328 LPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMK 387

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           ++ +M+ +G +P    Y+++ K Y +    E   ++  +M R G  P+  ++T +I G
Sbjct: 388 VFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISG 445



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            YT L+    ++R  D +  LL E+E+ G  PD + +NALI  +   +   EA   +  M
Sbjct: 116 TYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRM 175

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC------PDDNSYTVLIGGL 548
             SG +PT  T+N ++K Y   G  E  ++V+D M   G        P+  +Y +L+   
Sbjct: 176 GHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAW 235

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
               R  EA++ +  M   G    V+ YN  A+  ++   ++  +EL  +M
Sbjct: 236 CDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEM 286



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 27/279 (9%)

Query: 327 SKLPKEAQLLFDKL---KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           ++ P +A   F  L    HR  P+L TYT LL      +       +  E+ D G +PD 
Sbjct: 92  ARRPHQAHSAFRHLVDDGHR--PSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDS 149

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           +  N ++  L++  +  +A   F  M   G               C+  A+ +  LI G+
Sbjct: 150 IFFNALINALVEARRMGEATNTFLRMGHSG---------------CRPTASTFNTLIKGY 194

Query: 444 GNRRRMDI---VYDLLKEMEERG---CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
           G   R +    V+D++      G     P+  TYN L+K        +EA R+   M  S
Sbjct: 195 GIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRAS 254

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGE 556
           G  P + TYN +  +Y +        ++  EM ++ G    + ++ +++GG   + R GE
Sbjct: 255 GADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGE 314

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           A + + +M + G+   V+ +N        A     +D++
Sbjct: 315 ALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDV 353



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321
           + ++ ++E+ G K    + T+   +NA ++     K + +F+ M +   +      + L 
Sbjct: 351 DDVLGLMEQFGIKP--DIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILA 408

Query: 322 ENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWC---------RVKNLMEAGRVW 371
           +   R++ P++A+ L  ++ +    PN+ T+T ++ GW           +K   +A  V 
Sbjct: 409 KGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWTFETLIWGYSELKQPWKAEEVL 468

Query: 372 NEMIDKGFKPDVVAHNIMLEGLLKIG 397
             M D G +P    + ++ +    +G
Sbjct: 469 QMMQDAGVRPKQTTYCLVADAWKAVG 494


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 23/309 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDK 339
           TF   +  F    + K+AV +   M+       V T N L++ L +  ++ K   +L   
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVM 290

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           +K    PN+ TYT L+ G+  VK + +A  V+N +  +G  P+V ++++M+ GL K    
Sbjct: 291 IKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMV 350

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            +A+KLF+ M  K  +PN  +Y+ +I   CK                     N   Y  L
Sbjct: 351 DEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSL 410

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSG 498
           + G     ++D    LL +M++ G  PD  TY  L+  L K  ++ D A RIY++++  G
Sbjct: 411 LNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKD-AQRIYQDLLCKG 469

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
           +   I  Y +++    + G ++    +  +M   GC PD  +Y  LI  L   +++G+A 
Sbjct: 470 YPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAV 529

Query: 559 KYLEEMLEK 567
           K L EM+ +
Sbjct: 530 KLLREMIAR 538



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 58/399 (14%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++S L +   F+  +S  ++M  KG+   M TF I +N F+   +   A ++   + 
Sbjct: 56  FNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKIL 115

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFT-------------------- 345
           K  ++    T+N LL  L  +   KEA    D  ++ RF                     
Sbjct: 116 KLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETR 175

Query: 346 ----------------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389
                           P++  YT ++  +C+ K +++A  +++EMI K   P+VV  N +
Sbjct: 176 AALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSL 235

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------ 431
           + G   +G+  +A+ L   M     +PNV ++ I+I   CK+                  
Sbjct: 236 IYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGV 295

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N   YT L+ G+   + ++    +   +  RG  P+  +Y+ +I  +   KM DEAV+
Sbjct: 296 EPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVK 355

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++KEM      P   TY+ ++    ++G       + DE+  RG   +  +Y  L+ GL 
Sbjct: 356 LFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLC 415

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              +  +A   L +M ++G++  +  Y      L + GR
Sbjct: 416 KNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGR 454



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/335 (20%), Positives = 120/335 (35%), Gaps = 91/335 (27%)

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI---------------- 388
           TP +  +  +L    ++ +   A     +M  KG +P++   NI                
Sbjct: 50  TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFS 109

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR-------------------SYTIMIWKFC 429
           M+  +LK+G + D + +  +++    +  V+                   SY  +I   C
Sbjct: 110 MVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLC 169

Query: 430 KQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           K                      +  +YT +I  F   + +   YDL  EM  +   P+ 
Sbjct: 170 KSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNV 229

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKE----------------------------------- 493
           +T+N+LI    I     EAV +  E                                   
Sbjct: 230 VTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSV 289

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           M++ G +P + TY  +M  YF        + V++ +  RG  P+ +SY+V+I GL     
Sbjct: 290 MIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKM 349

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             EA K  +EM  K M    + Y+     L ++GR
Sbjct: 350 VDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGR 384


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 183/391 (46%), Gaps = 21/391 (5%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+ +++  L   +  R+    F     D  G + N R +  ++S L ++ +      + +
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRD--GCSPNVRAFTFLISGLCKSGRVGDARLLFD 197

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M + G++ S+ T+   +  ++       A+ I ELM K        T N L+  L   K
Sbjct: 198 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK 257

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             +  +LL + +K  FTP + T+T L+ G+C  +   +A R+ N+M+    K D+     
Sbjct: 258 TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGK 317

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           ++  L+K  +  +A +L   + A G  PNV +YT +I  +CK                 +
Sbjct: 318 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG---------------K 362

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +DI  ++LK ME  GC P+  TYN+L+  +   K   +A+ +  +M + G  P + TY  
Sbjct: 363 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 422

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++      +++   ++++ M + G  PD+++Y VL   L    R+ EAY ++   + KG
Sbjct: 423 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKG 479

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +    + Y       S+AG +     L ++M
Sbjct: 480 VALTKVYYTTLIDGFSKAGNTDFAATLIERM 510



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 20/334 (5%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           + +  +++ L +  + +    +L E+   GL+ ++ T+   ++ +  + +   A+ + ++
Sbjct: 313 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 372

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKN 363
           M +   +    T N L+  L + K   +A  L  K+ K    PN+ TYT LL G C   +
Sbjct: 373 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 432

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
              A R++  M   G KPD  A+ ++ + L K G+  +A                  Y+ 
Sbjct: 433 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA------------------YSF 474

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           ++ K        YT LI GF      D    L++ M + GC PD  TY+ L+  +  QK 
Sbjct: 475 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 534

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA+ I  +M   G K TI  Y +++    + G ++  +++++EM   G  P   +YTV
Sbjct: 535 LNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTV 594

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            I     + R  +A   + +M  +G+   V+ YN
Sbjct: 595 FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 628



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 160/365 (43%), Gaps = 18/365 (4%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAV 299
            A + + YN  +  L R    E M  +  ++ + GLL    T+   + ++    +   A 
Sbjct: 29  LALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAH 88

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYTVLLGGW 358
             F L+ +   +    T N L+    R+   ++A  LF  +       N  +YT+L+ G 
Sbjct: 89  RYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 148

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
           C  K + +A  ++  M   G  P+V A   ++ GL K G+  DA  LF+ M   G  P+V
Sbjct: 149 CDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSV 208

Query: 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
            +Y  MI                G+    RM+    + + ME+ GC PD  TYN LI  +
Sbjct: 209 MTYNAMI---------------VGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 253

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
             QK  +EA  +    V+ GF PT+ T+  ++  Y     ++   ++ ++M+   C  D 
Sbjct: 254 CDQK-TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 312

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
             +  LI  LI +DR  EA + L E+   G+   V+ Y        ++G+  +  E+ + 
Sbjct: 313 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 372

Query: 599 MRFSG 603
           M   G
Sbjct: 373 MERDG 377



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 152/353 (43%), Gaps = 3/353 (0%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G A     Y +++    +A   +   +++E M ++G      T+ + ++A    K   
Sbjct: 477 RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN 536

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ I + M+    K  +     L++ + R      A+ +++++      P+ TTYTV +
Sbjct: 537 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 596

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             +C+   L +A  +  +M  +G  PDVV +NI+++G   +G    A    + M      
Sbjct: 597 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 656

Query: 416 PNVRSYTIMIWKFCKQNAA-VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           PN  +Y +++    K N A V +   +G  N   +DI + LL+ M + G  P   TY++L
Sbjct: 657 PNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSL 716

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I         +EA  +   M   G  P    Y +++K    T  +E        M   G 
Sbjct: 717 IAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGF 776

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            P   SY +L+ GL ++    +      ++LE G     + +      L +AG
Sbjct: 777 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAG 829



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           QLL   +KH   P +TTY+ L+ G+C+   L EA  + + M  KG  P+   + ++++  
Sbjct: 696 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCC 755

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
                   A+    +M   G  P + SY +++   C +                    + 
Sbjct: 756 CDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDE 815

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
             +  L  G      +DI + +L  ME+R C     TY
Sbjct: 816 VAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 853



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +LE M + GL  ++ T+   +  F  A   ++A  + + M         D    L++   
Sbjct: 697 LLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCC 756

Query: 326 RSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +K  ++A      +    F P L +Y +L+ G C   +  +   ++ ++++ G+  D V
Sbjct: 757 DTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEV 816

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           A  I+ +GLLK G      ++  +M+ +    + ++Y ++
Sbjct: 817 AWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALV 856


>gi|297839849|ref|XP_002887806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333647|gb|EFH64065.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 541

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 207/447 (46%), Gaps = 32/447 (7%)

Query: 122 SSLTNHNLATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYK-STADPRE 180
           SS  NH+  +    +  V+ + VS V             N+  ++I S  +  + A    
Sbjct: 32  SSFQNHSFPSAFHRAGLVHSQIVSYVPR-------FVSSNHFSTQIISAMFDVNQALAPL 84

Query: 181 IERVCKVIDELFSLDRNMEAV--LDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           ++ +  +I  +  L+   +A+  L+E   +L+H+    ++   R   R AF  F W G+K
Sbjct: 85  VQGLIDLIRHVSELESEADAMASLEESSFDLNHDSFYSLIWELREEWRLAFLAFKW-GEK 143

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKA 298
            G   + +  + M+ +LG  ++F     ++ +M      + +   + M+ +AAA +  +A
Sbjct: 144 RG-CDDQKACDLMIWVLGNHQKFNIAWCLIRDMFHVSKDTRKAMFLMMDRYAAANDTIQA 202

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358
           +  F++M+K+K     +    LL  L R    ++AQ      K  F  ++  + ++L GW
Sbjct: 203 IRTFDIMDKFKHTPDDEAFQGLLYALCRHGHIEKAQEFMLASKKLFPVDVEGFNIILNGW 262

Query: 359 CRV-KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           C +  ++ EA R+W EM +    P+  +++ M+    K+G   D+++L++ MK +G +P 
Sbjct: 263 CNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPG 322

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           +  Y  +++   ++N     C                LL++M+E G  P  +TYN++I+ 
Sbjct: 323 IVVYNSLLYVLTREN-----CFHEAM----------KLLEKMDEEGLKPGSVTYNSMIRP 367

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +      D A  +   M+     PT+ T++    ++ +  N++   +V  +M   G  P 
Sbjct: 368 LCEAGKLDVARNVLATMISENLSPTVDTFH----AFLEAVNFDTNLEVLGQMKVSGLGPT 423

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEM 564
           ++++ +++G L    +   A K   EM
Sbjct: 424 EDTFLLILGKLFKGKQPENALKIWAEM 450



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%)

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA RI++EM      P   +Y+ ++  + + GN     +++DEM +RG  P    Y  L+
Sbjct: 271 EAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIVVYNSLL 330

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             L  ++   EA K LE+M E+G+K   + YN     L  AG+
Sbjct: 331 YVLTRENCFHEAMKLLEKMDEEGLKPGSVTYNSMIRPLCEAGK 373


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 176/406 (43%), Gaps = 58/406 (14%)

Query: 221 FRHARRPAFRFFCWAGD-KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LS 278
           F H  + AF F       K G+  ++ T N++M  L    + +  +   +++  +G  + 
Sbjct: 55  FCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMD 114

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
             ++   +N      E + AV +  ++     +  V   N +++ L + KL  EA  L+ 
Sbjct: 115 HVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYS 174

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-------------------- 377
           ++  R   P+  TYT L+ G+C +  LM A  + +EMI K                    
Sbjct: 175 EMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEG 234

Query: 378 ---------------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
                          G KP VV ++ +++G   +G+  +A ++F  M   G +PNV SY 
Sbjct: 235 NVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYN 294

Query: 423 IMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
           IMI   CK                     +   Y  LI G     R+    +L+ EM  R
Sbjct: 295 IMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 354

Query: 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
           G P D +TY +L+  +   +  D+A  ++ +M   G +PT++TY  ++    + G  +  
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 414

Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++++  ++ +GCC D  +YTV+I GL  +    EA     +M + G
Sbjct: 415 QELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNG 460



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 165/359 (45%), Gaps = 17/359 (4%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +N ++  L + +Q+ T +S+ ++M  KG+  +  T  I +N F    +   + ++   + 
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKIL 72

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           K  ++    T+N L++ L      K++    DK+  + F  +  +Y  LL G C++    
Sbjct: 73  KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETR 132

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A ++   + D+  +P+VV +N +++GL K    ++A  L+  M A+G  P+        
Sbjct: 133 CAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPD-------- 184

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                  A  YT LI GF    ++   + LL EM  +   P    YN LI  +  +    
Sbjct: 185 -------AITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVK 237

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA  +   M + G KP + TY+ +M  Y   G  +  ++++  M++ G  P+  SY ++I
Sbjct: 238 EAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMI 297

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604
            GL    R  EA   L EML K M    + YN     L ++GR      L  +M   G+
Sbjct: 298 NGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ 356



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 21/324 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN +++ L +    +   ++L  M ++G+   + T+   M+ +    E + A  IF  M 
Sbjct: 223 YNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMV 282

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
           +      V + N ++  L + K   EA  L  ++ H+   P+  TY  L+ G C+   + 
Sbjct: 283 QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT 342

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  + NEM  +G   DVV +  +L+ L K      A  LF  MK +G  P + +YT +I
Sbjct: 343 SALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALI 402

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              CK                 R+    +L + +  +GC  D  TY  +I  +  + M D
Sbjct: 403 DGLCKGG---------------RLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFD 447

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ I  +M  +G  P   T+ +I++S F+    +   K+  EMI +G    D      +
Sbjct: 448 EALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLDFK----V 503

Query: 546 GGLISQDRSGEAYKYLEEMLEKGM 569
             +  Q+ + +A K L EM+ KG+
Sbjct: 504 ADVFVQNENDKAEKLLHEMIAKGL 527


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 176/383 (45%), Gaps = 24/383 (6%)

Query: 240 GFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
           G A N  TYN ++ ++ GR  + E + S+L +M   G   ++ T+   + AF  A E   
Sbjct: 185 GVAPNVYTYNILVRALCGRGHRKEAL-SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDG 243

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A  +  +M +   K  + T N ++  + ++   ++A+ +FD++ +    P+  +Y  L+G
Sbjct: 244 AERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVG 303

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G+C+     EA  V+ EM  KG  PDVV    ++  + K G    A+ L   M+ +G   
Sbjct: 304 GYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQM 363

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
           N  ++T +I  FCK+                    +   Y  LI G+    RMD   +LL
Sbjct: 364 NEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELL 423

Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            EME +G  PD +TY+ +I           A  + ++M+  G  P   TY+ +++     
Sbjct: 424 HEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGE 483

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                   ++  MI+ G  PD+ +YT LI G   +     A    ++M++ G+   V+ Y
Sbjct: 484 KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTY 543

Query: 577 NKFAADLSRAGRSYVLDELAQKM 599
           +     LS++ R+    +L  K+
Sbjct: 544 SVLINGLSKSARAMEAQQLLFKL 566



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 33/367 (8%)

Query: 240 GFAHNSRTYNSMMSILGRA------RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK 293
           G+  +   YN+++  L  A      R F++M+S      +    ++ T+ I + A     
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLS------DGVAPNVYTYNILVRALCGRG 204

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYT 352
            RK+A++I   M        V T N L+    R+     A+ L   ++     PNL T+ 
Sbjct: 205 HRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFN 264

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            ++ G C+   + +A +V++EM+ +G  PD V++N ++ G  K G   +A+ +F  M  K
Sbjct: 265 SMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 324

Query: 413 GPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIV 452
           G  P+V ++T +I   CK                     N   +T LI GF  +  +D  
Sbjct: 325 GIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 384

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
              ++ M++    P  + YNALI    +    DEA  +  EM   G KP + TY+ I+ +
Sbjct: 385 LLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 444

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y +  +     ++  +M+ +G  PD  +Y+ LI  L  + R  +A+   + M++ G++  
Sbjct: 445 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPD 504

Query: 573 VLDYNKF 579
              Y   
Sbjct: 505 EFTYTSL 511



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 16/226 (7%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G+ P V+A+N +L  L      + A + F+ M + G +PNV +Y I++   C        
Sbjct: 151 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALC-------- 201

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
               G G+R+       +L++M   GC P+ +TYN L+         D A R+   M   
Sbjct: 202 ----GRGHRKE---ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREG 254

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G KP + T+N ++    + G  E  RKV+DEM+R G  PD  SY  L+GG      S EA
Sbjct: 255 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEA 314

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                EM +KG+   V+ +      + +AG       L ++MR  G
Sbjct: 315 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG 360



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 139/308 (45%), Gaps = 17/308 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G A +  +YN+++    +A      +S+  EM +KG++  + TF   ++    A   ++A
Sbjct: 290 GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERA 349

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           V +   M +   +    T   L++   +     +A L    +K  R  P++  Y  L+ G
Sbjct: 350 VTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALING 409

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C V  + EA  + +EM  KG KPDVV ++ ++    K      A +L + M  KG  P+
Sbjct: 410 YCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPD 469

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y+ +I   C +               +R+   + L K M + G  PD  TY +LI  
Sbjct: 470 AITYSSLIRVLCGE---------------KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG 514

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
              +   + A+ ++ +MV++G  P + TY++++    ++      +++  ++      P 
Sbjct: 515 HCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPA 574

Query: 538 DNSYTVLI 545
           +  Y  L+
Sbjct: 575 NTKYDALM 582



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 10/328 (3%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN++++      + +    +L EM  KGL   + T+   ++A+    +   A   FEL N
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSA---FEL-N 458

Query: 307 KYKFKAGV----DTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTYTVLLGGWCRV 361
           +   + GV     T + L+  L   K   +A +LF + +K    P+  TYT L+ G C+ 
Sbjct: 459 QQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKE 518

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            N+  A  + ++M+  G  PDVV +++++ GL K  +  +A +L   +  + P P    Y
Sbjct: 519 GNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKY 578

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             ++    K        L+ GF  +  M+    + + M +R    DG  Y+ LI      
Sbjct: 579 DALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRA 638

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
               +A+  +K+M++ GF P   +   +++  F+ G      +V  +++      D  + 
Sbjct: 639 GNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEAS 698

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             LI   +++         L  M + G+
Sbjct: 699 KALIDLNLNEGNVDAVLDVLHGMAKDGL 726


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 161/344 (46%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   +LE+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEEN 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  + +   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           ++  +L   M+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ K+M  +   PD +TYN LI  +  +    +A  +  EM+  G 
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 22/304 (7%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M++F    E + A ++F+ + K+  +  
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+    +     E   L + ++     P++ TY+VL+ G C+   + +A  +++
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+DKG  P+ V    +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK+ 
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++  K M +     D + Y 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 533 GCCP 536
           G  P
Sbjct: 411 GYKP 414



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +     +A +LFD++  +   PN  T+T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I   CK+                    +   YT LI+G     R      +L+
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           EM   G  P+  TY  +I     +       ++ KEM R G+KP++ T
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 503

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 192/408 (47%), Gaps = 29/408 (7%)

Query: 184 VCKVIDELFSLDRN-MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFA 242
           +C+V   L  + RN ++  L   G+  S  LV +VL    ++   A +FF WA  +    
Sbjct: 61  ICEV---LVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAIKFFRWA--RQLAK 115

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF 302
            ++ ++N M+ +LG+   FE M + +  M ++ +LS+ TF     ++ +A   K+A   F
Sbjct: 116 QSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCSAGRSKEARMTF 175

Query: 303 ELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           E+M++Y+ +  V  +N LL  +        EA   F+K K +   +  ++ +LL GW + 
Sbjct: 176 EVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGESFAILLEGWEKE 235

Query: 362 KNLMEAGRVWNEMIDK-GFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            N+ +A   ++EM+ + G+ P+ V +++  L  L++ G+  DAIK+   +K     P ++
Sbjct: 236 GNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKLKKNRCLPGLK 295

Query: 420 ---------------SYTIMIWKFCK-----QNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
                          ++ I++W          N  VY  +I       ++D  + LL  M
Sbjct: 296 FLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKIDDSFRLLDSM 355

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  P+ LTYN +   +   K   E  + ++EMV++   PT  +    +   F   + 
Sbjct: 356 VFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSCAAAITMLFDGYDP 415

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           E    +W+ M      P D S   L+ GL + +R  E  ++ ++M+++
Sbjct: 416 ETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMIDQ 463



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 120/269 (44%), Gaps = 19/269 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N +++ LG+++L +E       ++     +L T+  + G +C      EA   +  M   
Sbjct: 122 NLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCSAGRSKEARMTFEVMDRY 181

Query: 378 GFKPDVVAHNIMLEGLL-KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
             + DVVA N +L  +  +  + S+A + FE  K K P  +  S+ I++  + K+     
Sbjct: 182 EVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPL-DGESFAILLEGWEKE----- 235

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLT-YNALIKLMKIQKMPDEAVRIYKEM 494
                  GN  +  + +D   EM +R G  P+ ++ Y+A +  +      ++A+++  ++
Sbjct: 236 -------GNVEKAKVTFD---EMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKL 285

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            ++   P +   +  + S  Q  +      +WD ++  G  P+   Y  +IG L    + 
Sbjct: 286 KKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKI 345

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            ++++ L+ M+  G     L YN   + L
Sbjct: 346 DDSFRLLDSMVFHGAFPNSLTYNLIFSSL 374


>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
 gi|194704512|gb|ACF86340.1| unknown [Zea mays]
          Length = 637

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 174/412 (42%), Gaps = 56/412 (13%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-N 287
           F+     G KP       TY  +++ L   R FE++ S+L E+   G+     F  A+ N
Sbjct: 90  FKHLMDEGHKPSLV----TYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALIN 145

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFT 345
           AF  AK   +A+  F  M          T N L++  G    P+E+Q +FD +  +    
Sbjct: 146 AFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVR 205

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN------------------ 387
           PNLTTY +L+  WC  +NL EA  V  +M   GF+PD+V +N                  
Sbjct: 206 PNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEEL 265

Query: 388 ----------------IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
                           I++ G  + G+  +A++  + MK  G  PNV             
Sbjct: 266 IVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNV------------- 312

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
              ++  L+ GF +   M  V  +L  ME+ G  PD +TY+  +          + + ++
Sbjct: 313 --VIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVF 370

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M+ +G +P    Y+++ K + +    E    +  +M   G CP+  ++T +I G  S 
Sbjct: 371 DKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSV 430

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                A +  ++M + G+   +  +       S   + +  +E+ Q MR +G
Sbjct: 431 ADMESAMRVYDKMCKSGVYPNLRTFETPIWGYSEQKQPWKAEEVLQMMRETG 482



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 151/352 (42%), Gaps = 25/352 (7%)

Query: 217 VLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           ++  F  A+R   A   F W     G    + T+N+++   G   + E    + + MG +
Sbjct: 143 LINAFVEAKRMGEAINTF-WKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVE 201

Query: 275 GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           G +  ++ T+ I + A+   +  ++A  +   M    F+  + T N +      +     
Sbjct: 202 GSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWR 261

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A+ L  +++ R   +  T+ +++GG+CR   L EA R   +M D G  P+VV  N +L+G
Sbjct: 262 AEELIVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNVVIFNTLLKG 321

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------IMIWKFCKQN 432
            L     +   K+  +M+  G  P++ +Y+                     MI    + +
Sbjct: 322 FLDANDMAAVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPD 381

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
             VY+ L  GF   ++ +   DLL +M   G  P+ +T+  +I         + A+R+Y 
Sbjct: 382 PQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYD 441

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +M +SG  P + T+   +  Y +        +V   M   G  P  ++Y ++
Sbjct: 442 KMCKSGVYPNLRTFETPIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLI 493



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 19/251 (7%)

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K   +A  V+  ++D+G KP +V + I+L  L           L   ++  G  P     
Sbjct: 81  KKPYQAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRP----- 135

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                     ++  +  LI  F   +RM    +   +M+  GC P   T+N LIK   I 
Sbjct: 136 ----------DSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIV 185

Query: 482 KMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
             P+E+ R++  M V    +P + TYN+++K++    N E    V  +M   G  PD  +
Sbjct: 186 GKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVT 245

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           Y  +     + D +  A + + E+  + ++     +        R GR        Q+M+
Sbjct: 246 YNTIASAYANNDETWRAEELIVEIQTR-VRTSERTWGIIIGGYCREGRLEEALRCVQQMK 304

Query: 601 FSGKFEVSNVL 611
            +G   V NV+
Sbjct: 305 DAG--SVPNVV 313



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 264 MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           ++ ++E+ G K    + T+   +N F++     K + +F+ M +   +      + L + 
Sbjct: 334 ILGLMEKFGIKP--DIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKG 391

Query: 324 LGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
             R++ P++A+ L  ++ H    PN+ T+T ++ GWC V ++  A RV+++M   G  P+
Sbjct: 392 FVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPN 451

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--IWK 427
           +      + G  +  +   A ++ ++M+  G  P   +Y ++   WK
Sbjct: 452 LRTFETPIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIADAWK 498


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 187/452 (41%), Gaps = 80/452 (17%)

Query: 217 VLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRA-------RQFETMV-- 265
           V E  RH  + +   R F W G + G+ H+  TYN  +  L +A        +F+ M   
Sbjct: 8   VGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRR 67

Query: 266 --------------------------SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
                                      +L ++ E G+ L++ T+ + ++    A     A
Sbjct: 68  GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA 127

Query: 299 VAIFELMNK-YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           + IF+ M+        V T N LL+ L   +   EA +LF+ + K    PN+ +Y+ LL 
Sbjct: 128 LEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLD 187

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G C+   L EA R+W EM++K   PD+VA+   + GL K  + ++A      M  KG   
Sbjct: 188 GLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKA 247

Query: 417 NVRSYTIMIWKFCKQ-------------------------------------NAAVYTCL 439
           +  +++ +I   CK+                                     +A ++  L
Sbjct: 248 DAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTL 307

Query: 440 ITGFGNRRRMD---IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
           I      +R+    +++  +K M+E  CPP+  TYN ++  +   K  DEA  +  EM  
Sbjct: 308 IHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMAN 367

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556
            G  P + TY+ ++    + G  +    + +EM + G  PD  +   ++  L    +   
Sbjct: 368 YGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDY 427

Query: 557 AYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           A  +LE M  +G    ++ YN     L +AGR
Sbjct: 428 ALSHLETMKARGSTPDLVTYNTLLDGLCKAGR 459



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 24/312 (7%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR----FTPNLTTYT 352
           +A   FE M         +  N L+  + +SK   +  LLF ++K        PNL TY 
Sbjct: 284 EACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYN 343

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +++   C+ K L EA  + NEM + G  PDVV ++ +++GL K+GK   A  L E M  +
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE 403

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+  S+T         +A++    +       ++D     L+ M+ RG  PD +TYN
Sbjct: 404 GVFPD--SFT---------DASI----LNALSKAGKVDYALSHLETMKARGSTPDLVTYN 448

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+  +      DEA+    +MV +   P + +Y +I+ +  ++G       ++ EM++R
Sbjct: 449 TLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD-LSRAGRSYV 591
           G  PD   Y  L+ GL    R+G     L E+L+  +  P    +K   D L +AG++  
Sbjct: 509 GVLPDTVLYHSLLDGLA---RNGLEDLAL-ELLKTSLCKPDFVMHKMVLDGLCKAGKAED 564

Query: 592 LDELAQKMRFSG 603
             E+ ++M  +G
Sbjct: 565 ACEVVERMADAG 576



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 175/438 (39%), Gaps = 82/438 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G   N  TY+ ++    +A + +  + + + M   G  +  + TF   +    + +   +
Sbjct: 103 GVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSE 162

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A  +FE M K   +  V + + LL+ L ++    EA  L++++  +   P+L  YT  + 
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVT 222

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVA-----------------HNIMLEGLLKIGKR 399
           G C+   + EA     +M+ KG K D VA                  N M+E L + G  
Sbjct: 223 GLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGML 282

Query: 400 SDAIKLFEVMKAKG--PS------------------------------------PNVRSY 421
            +A K FE M ++   PS                                    PN+ +Y
Sbjct: 283 DEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETY 342

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            IM+   CK                     +   Y+ L+ G     ++D   DLL+EM +
Sbjct: 343 NIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD  T  +++  +      D A+   + M   G  P + TYN ++    + G  + 
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDE 462

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
                 +M+   C PD  SYT++I  L    ++  A+   +EM+++G+    + Y+    
Sbjct: 463 AITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLD 522

Query: 582 DLSRAGRSYVLDELAQKM 599
            L+R G    L++LA ++
Sbjct: 523 GLARNG----LEDLALEL 536



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 124/257 (48%), Gaps = 18/257 (7%)

Query: 336 LFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           LFD L  +  +  ++ TY   L    +      A   + +M  +G+ PD   ++I+L GL
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
            K G+   A +L   ++  G   NV +Y+++I   CK +               R+D   
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS---------------RVDDAL 128

Query: 454 DLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           ++ K M   G C PD +T+N+L+K +   +   EA  +++ M ++G +P + +Y+ ++  
Sbjct: 129 EIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDG 188

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G  +   ++W+EM+ + C PD  +YT  + GL   +R  EA     +M+ KG KA 
Sbjct: 189 LCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKAD 248

Query: 573 VLDYNKFAADLSRAGRS 589
            + ++     L + G +
Sbjct: 249 AVAFSTVIGILCKKGHA 265



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 140/347 (40%), Gaps = 63/347 (18%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVA 300
            H     N M+  L R+   +      EEM  +    S E F   ++A   +K     V 
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL 322

Query: 301 IFELMNKYK---FKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           +F+ M   K       ++T N +++NL ++K   EAQ L +++  +  +P++ TY+ L+ 
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 357 GWCRVKNLMEAGRVWNEM------------------------ID-----------KGFKP 381
           G C++  L  A  +  EM                        +D           +G  P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------- 434
           D+V +N +L+GL K G+  +AI     M A   +P+V SYTI+I   C+   A       
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 435 -------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                        +Y  L+ G       D+  +LLK      C PD + +  ++  +   
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---SLCKPDFVMHKMVLDGLCKA 559

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
              ++A  + + M  +GF     TY  ++    + G  +  R++ D+
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDD 606



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 16/228 (7%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG++  V  +N  L+ L K      A + F+ M+ +G  P+  +Y+I++   CK      
Sbjct: 32  KGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAG---- 87

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
                       +D   +LL ++ E G   + +TY+ +I         D+A+ I+K M  
Sbjct: 88  -----------ELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSS 136

Query: 497 SG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
            G   P + T+N ++K             +++ M + GC P+  SY+ L+ GL    R  
Sbjct: 137 GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLD 196

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA +  EEM+EK     ++ Y  F   L +A R     +  +KM   G
Sbjct: 197 EACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA--MNAFAAAKERKK 297
           G + +  TY++++  L +  + +    +LEEM ++G+   ++F  A  +NA + A +   
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFP-DSFTDASILNALSKAGKVDY 427

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A++  E M        + T N LL+ L ++    EA     K+   + TP++ +YT+++ 
Sbjct: 428 ALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIIT 487

Query: 357 GWCRVKNLMEAGRVWNEMIDKGF--------------------------------KPDVV 384
             CR      A  ++ EM+ +G                                 KPD V
Sbjct: 488 ALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFV 547

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            H ++L+GL K GK  DA ++ E M   G   +  +Y  ++
Sbjct: 548 MHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVV 588


>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 180/404 (44%), Gaps = 48/404 (11%)

Query: 201 VLDECGINLSHNLVVDVL---------ERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSM 251
           VL+E GI  S  LV +VL         E      + A++FF W G +  + H +  Y+ +
Sbjct: 108 VLEELGIRPSGILVREVLFGILKNINSENKTRCAKLAYKFFVWCGQQEDYRHTANAYHLI 167

Query: 252 MSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF 310
           M+I    ++F+ +  +++EM  KG   +  TF I +     A   K  V  F     + +
Sbjct: 168 MNIYAECKEFKALWRLVDEMIGKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNY 227

Query: 311 KAGVDTINCLLEN---LGRSKLPKEA--QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
           +    + N +L +   L + KL +    Q+L D     F+ ++ TY +++    R+  + 
Sbjct: 228 RPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDG---GFSSDILTYNIVIYAKYRLGKVD 284

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--IGK-------------RSDAIKLFEVMK 410
           +   +  EM   GF PD   +NI+L  + K  IGK             +  A+KL   M+
Sbjct: 285 QVLTLLGEMDRNGFSPDFHTYNILLHAISKGDIGKGDLDKEDLGKEKEQFKALKLLNYMR 344

Query: 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
             G  P V  +T                LI GF    ++D       EM++ GC PD + 
Sbjct: 345 ETGIEPTVLHFTT---------------LIDGFSRAGKLDACQYFFNEMKKNGCMPDVVA 389

Query: 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530
           Y  +I    + +  ++A  +++EM+     P + TYN +++     G ++    ++ EM 
Sbjct: 390 YTVMITGYVVARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEME 449

Query: 531 RRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           R+GC P+   Y  L+  L +  R  +A + +++M E G  A +L
Sbjct: 450 RKGCSPNSVVYITLVSCLRNAGRVADAREVIKQMTETGKYAHLL 493


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 165/362 (45%), Gaps = 17/362 (4%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY  M+  + + R+ +    +L EM EKGL+ S+ T+   +  +      + A+ I 
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRV 361
            LM     +    T N L+    + K   +A  L  K L+ + TP+L TY  L+   C+ 
Sbjct: 413 GLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKA 472

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
            +   A ++ + + + G  PD   +++ ++ L K  +  +A  LF  +K KG        
Sbjct: 473 GHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG-------- 524

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                   K N  +YT LI G     ++D    LL+ M    C P+  TYN+LI  +  +
Sbjct: 525 -------IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKE 577

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
               E + + + M + G KPT+ TY ++++   + G+++   +V+++M+  G  PD  +Y
Sbjct: 578 GKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTY 637

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
           T  I    +     EA   +  M+E G+    L Y    +   R G +Y    + ++M  
Sbjct: 638 TAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLD 697

Query: 602 SG 603
           +G
Sbjct: 698 AG 699



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 173/391 (44%), Gaps = 69/391 (17%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
           KPGF H  ++++ ++ IL     F         +GEK  +SM      + A  +  + + 
Sbjct: 113 KPGFKHTVKSHSFLLKILIPNNLFG--------VGEKIRISM------IKACVSVDDIRF 158

Query: 298 AVAIFELMNK----YKFKAGVDTINCLLENLGR--------------------------- 326
            +     MN+     KFK  V + N LL  L R                           
Sbjct: 159 LLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLN 218

Query: 327 ------SKLPK--EAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
                 SK+    EA L   K+ +   +P+  TYT L+ G+CR  ++  A +V+N M +K
Sbjct: 219 TMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNK 278

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G + + V++  ++ GL + G+  + I LF+ M+     P VR+YT++I            
Sbjct: 279 GCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL--------- 329

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                FGN R ++ + DL  EM ER C P+  TY  ++  M  ++  DE+ RI  EM+  
Sbjct: 330 -----FGNDRNLEGM-DLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEK 383

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P++ TYN +++ Y + G  E   ++   M    C P++ +Y  LI G   +    +A
Sbjct: 384 GLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKA 443

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              L +MLE  +   ++ YN       +AG 
Sbjct: 444 MTLLSKMLESKLTPSLVTYNSLIHVQCKAGH 474



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 156/391 (39%), Gaps = 36/391 (9%)

Query: 187 VIDELFSLDRNMEA--VLDE-----CGINL-SHNLVVDVL--ERFRHARRPAFRFFCWAG 236
           +I  LF  DRN+E   + +E     C  N+ ++ ++VD +  ER     R         G
Sbjct: 325 IIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKG 384

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
             P       TYN+++       + E  + +L  M        E T+   +  F+  K  
Sbjct: 385 LVPSVV----TYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHV 440

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
            KA+ +   M + K    + T N L+    ++     A  L D LK     P+  TY+V 
Sbjct: 441 HKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVF 500

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C+ K + EA  ++N + +KG K + V +  +++G  K GK  +AI L E M ++  
Sbjct: 501 IDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDC 560

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            PN  +Y  +I+  CK+                      A YT LI         D    
Sbjct: 561 LPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANR 620

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +  +M   G  PD  TY A I          EA  +   M+ +G  P   TY +++ +Y 
Sbjct: 621 VFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYE 680

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           + G       V   M+  GC P    +  LI
Sbjct: 681 RLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           +YN L+ ++    M DE  R+Y EM+     P I+T N ++ +Y + GN         ++
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
            + G  PD  +YT LI G    +    AYK    M  KG +   + Y      L  AGR 
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGR- 299

Query: 590 YVLDE---LAQKMR 600
             +DE   L +KMR
Sbjct: 300 --IDEGISLFKKMR 311



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 2/189 (1%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N   Y +++    +A + +  +S+LE M  E  L +  T+   +       + ++ 
Sbjct: 524 GIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEG 583

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           +++ E M+K   K  V T   L+E + R      A  +F+++      P++ TYT  +  
Sbjct: 584 LSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHT 643

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C   N+ EA  +   MI+ G  PD + + +++    ++G   DA  + + M   G  P+
Sbjct: 644 YCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPS 703

Query: 418 VRSYTIMIW 426
              +  +IW
Sbjct: 704 HPIWNNLIW 712


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 182/391 (46%), Gaps = 21/391 (5%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S+ +++  L   +  R     F     D  G + N R +  ++S L ++ +      + +
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRD--GCSPNVRAFTFLISGLCKSGRVGDARLLFD 312

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            M + G++ S+ T+   +  ++       A+ I ELM K        T N L+  L   K
Sbjct: 313 AMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK 372

Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
             +  +LL + +K  FTP + T+T L+ G+C  +   +A R+ N+M+    K D+     
Sbjct: 373 TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGK 432

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           ++  L+K  +  +A +L   + A G  PNV +YT +I  +CK                 +
Sbjct: 433 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG---------------K 477

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +DI  ++LK ME  GC P+  TYN+L+  +   K   +A+ +  +M + G  P + TY  
Sbjct: 478 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 537

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           +++      +++   ++++ M + G  PD+++Y VL   L    R+ EAY ++   + KG
Sbjct: 538 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKG 594

Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +    + Y       S+AG +     L ++M
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIERM 625



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 189/452 (41%), Gaps = 78/452 (17%)

Query: 214 VVDVLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRAR---QFETMVSML 268
           V D+      A  PA    FF W   + GF H + ++ +++ +L R R   Q+E +V  +
Sbjct: 57  VADLFRAESTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSM 116

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-YKFKAGVDTINCLLENLGRS 327
               +    + E  +++ +A  A   R+   A   L  K Y F          L +L R 
Sbjct: 117 LNCSD----TAEDMRVSADAIQAI--RRTGSARLALSPKCYNFA---------LRSLARF 161

Query: 328 KLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
            + +    ++ +L +    P+  TY  ++  +C+  +L  A R +  +++ G +P+    
Sbjct: 162 DMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTC 221

Query: 387 N-----------------------------------IMLEGLLKIGKRSDAIKLFEVMKA 411
           N                                   I+++GL +     +A+ LF +MK 
Sbjct: 222 NALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKR 281

Query: 412 KGPSPNVRSYTIMIWKFCK---------------QNAAV-----YTCLITGFGNRRRMDI 451
            G SPNVR++T +I   CK               QN  V     Y  +I G+    RM+ 
Sbjct: 282 DGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMND 341

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
              + + ME+ GC PD  TYN LI  +  QK  +EA  +    V+ GF PT+ T+  ++ 
Sbjct: 342 ALKIKELMEKNGCHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFTPTVVTFTNLIN 400

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            Y     ++   ++ ++M+   C  D   +  LI  LI +DR  EA + L E+   G+  
Sbjct: 401 GYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVP 460

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V+ Y        ++G+  +  E+ + M   G
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDG 492



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 20/334 (5%)

Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFEL 304
           + +  +++ L +  + +    +L E+   GL+ ++ T+   ++ +  + +   A+ + ++
Sbjct: 428 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 487

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKN 363
           M +   +    T N L+  L + K   +A  L  K+ K    PN+ TYT LL G C   +
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 547

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423
              A R++  M   G KPD  A+ ++ + L K G+  +A                  Y+ 
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA------------------YSF 589

Query: 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483
           ++ K        YT LI GF      D    L++ M + GC PD  TY+ L+  +  QK 
Sbjct: 590 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649

Query: 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV 543
            +EA+ I  +M   G K TI  Y +++    + G ++  +++++EM   G  P   +YTV
Sbjct: 650 LNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTV 709

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            I     + R  +A   + +M  +G+   V+ YN
Sbjct: 710 FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 743



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 152/353 (43%), Gaps = 3/353 (0%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERK 296
           + G A     Y +++    +A   +   +++E M ++G      T+ + ++A    K   
Sbjct: 592 RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN 651

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           +A+ I + M+    K  +     L++ + R      A+ +++++      P+ TTYTV +
Sbjct: 652 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 711

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
             +C+   L +A  +  +M  +G  PDVV +NI+++G   +G    A    + M      
Sbjct: 712 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 771

Query: 416 PNVRSYTIMIWKFCKQNAA-VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           PN  +Y +++    K N A V +   +G  N   +DI + LL+ M + G  P   TY++L
Sbjct: 772 PNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSL 831

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I         +EA  +   M   G  P    Y +++K    T  +E        M   G 
Sbjct: 832 IAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGF 891

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            P   SY +L+ GL ++    +      ++LE G     + +      L +AG
Sbjct: 892 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAG 944



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           QLL   +KH   P +TTY+ L+ G+C+   L EA  + + M  KG  P+   + ++++  
Sbjct: 811 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCC 870

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NA 433
                   A+    +M   G  P + SY +++   C +                    + 
Sbjct: 871 CDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDE 930

Query: 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
             +  L  G      +DI + +L  ME+R C     TY
Sbjct: 931 VAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 968



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +LE M + GL  ++ T+   +  F  A   ++A  + + M         D    L++   
Sbjct: 812 LLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCC 871

Query: 326 RSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +K  ++A      +    F P L +Y +L+ G C   +  +   ++ ++++ G+  D V
Sbjct: 872 DTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEV 931

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           A  I+ +GLLK G      ++  +M+ +    + ++Y ++
Sbjct: 932 AWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALV 971


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 21/376 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSIL---GRARQFETMVSMLEEMGEKGLLSMETFKI 284
           A++FF     + G   +  +Y SM+ +L   GR  + E +   +E   E+ +     +  
Sbjct: 271 AWKFFHELKSQ-GLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMET--ERAVPCAYAYNT 327

Query: 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344
            +  + +A + + A  + + + +      V + N +L  LG+ +   EA  LF+ +K   
Sbjct: 328 MIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA 387

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            PN +TY +++   C    + EA  + +EM   G  P+++  NIM++ L K  K   A +
Sbjct: 388 EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYE 447

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           +FE    +G               C  N+  Y  LI G G +  +D  Y L + M + G 
Sbjct: 448 MFETASQRG---------------CNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGH 492

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             + + Y +LI+   +    ++  +I+KEM R G +P +   N  M   F+ G+ E GR 
Sbjct: 493 NANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRA 552

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +++++   G  PD  SY++LI GL    ++ E       M ++G       YN       
Sbjct: 553 IFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFC 612

Query: 585 RAGRSYVLDELAQKMR 600
           ++G+     E+ ++M+
Sbjct: 613 KSGKLDKAYEVLEEMK 628



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 187/417 (44%), Gaps = 24/417 (5%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           L+ N++VD L + +    PA+  F  A  + G   NS TY S++  LG+    +    + 
Sbjct: 427 LTVNIMVDRLCKAKKFE-PAYEMFETASQR-GCNPNSVTYCSLIDGLGKKGNVDDAYRLF 484

Query: 269 EEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
           E M + G   +   +   +  F     ++    IF+ MN+   +  +  +N  ++ + ++
Sbjct: 485 ENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKA 544

Query: 328 KLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
              ++ + +F+ +K + F P++ +Y++L+ G  +     E   +++ M  +GF  D  A+
Sbjct: 545 GDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAY 604

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK---------------- 430
           N +++G  K GK   A ++ E MK K   P V +Y  +I    K                
Sbjct: 605 NAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKS 664

Query: 431 ----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486
                N  VY+ LI GFG   R+D  Y +L+EM ++G  P+  T+N+L+  +   +  +E
Sbjct: 665 KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINE 724

Query: 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546
           A+  ++ M      P  +TY++++    +   Y      W EM ++G  P+  +YT +I 
Sbjct: 725 ALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIA 784

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           GL       +A    E     G       +N     +S A R+     + ++ R  G
Sbjct: 785 GLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKG 841



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 134/314 (42%), Gaps = 23/314 (7%)

Query: 313 GVDTINC--LLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           GV    C  L+  L R++   +A+ +   ++  +F P  + YTVL+G     +    A  
Sbjct: 144 GVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALE 203

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
           +  +M + G++  V     ++  L + G+   A+ L + +K     P++           
Sbjct: 204 LLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDI----------- 252

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
                +Y   I  FG    +D+ +    E++ +G  PD ++Y ++I ++       EA  
Sbjct: 253 ----VLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEE 308

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           ++ +M      P  + YN ++  Y   G +E   K+ D++  RGC P   S+  ++  L 
Sbjct: 309 LFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLG 368

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR---SYVL-DELAQKMRFSGKF 605
            + +  EA    E M +K  +     YN     L  AG+   +Y++ DE+     F    
Sbjct: 369 KKRKVDEALTLFEAM-KKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLL 427

Query: 606 EVSNVLARWAETTK 619
            V+ ++ R  +  K
Sbjct: 428 TVNIMVDRLCKAKK 441



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 12/223 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A+  F  A  K G   N   Y+S++   G+  + +    +LEEM +KGL  ++ T+   M
Sbjct: 655 AYMLFEEAKSK-GIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLM 713

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFT 345
           +A   A+E  +A+  F+ M + K      T + L+  L R +   +A + + ++ K    
Sbjct: 714 DALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLV 773

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN+ TYT ++ G  +V N+ +A  ++      G  PD  + N ++EG+    +  +A  +
Sbjct: 774 PNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHV 833

Query: 406 FEVMKAKGPSPNVRSYTIMIWKF----CKQNAAVYTCLITGFG 444
           FE  + KG   NV++   ++       C + AAV      GFG
Sbjct: 834 FEETRLKGCRINVKACISLLDALNKAECLEQAAV-----VGFG 871


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 183/423 (43%), Gaps = 54/423 (12%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRAR---QFETMVSMLEEMGEKGLLSMET------ 281
           FF     +P F H   +Y +M+  L   R   Q  ++VS L  +  KG  S  T      
Sbjct: 105 FFNHLASRPPFRHTLHSYCTMLHFLCLHRMLPQAHSLVSFL--VSRKGTNSASTLFSSIL 162

Query: 282 ----------------FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
                           F   ++A+  +     AV  F L+ K KF   +     LL  + 
Sbjct: 163 RTMPRHHHHHHSVGLVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVV 222

Query: 326 RSKLPKEAQ----LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
           R + P E +    L  + L   + P +  + VL+ G+C+  ++  A  V++E+  +G +P
Sbjct: 223 RLR-PVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRP 281

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---------- 431
            VV+ N ++ G  K G   +  +L  VM+++G  P+V +++ +I   CK+          
Sbjct: 282 TVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLF 341

Query: 432 ----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKI 480
                     N   +T LI G     ++D+     + M  +G  PD +TYNALI  L K+
Sbjct: 342 DEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKV 401

Query: 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
             +  EA R+  EM  SG KP   T+  ++    + G+ E   ++   M+  G   DD +
Sbjct: 402 GDL-KEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVA 460

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           +T LI GL  + R  +A + L +ML  G K     Y        + G   +  +L ++M+
Sbjct: 461 FTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQ 520

Query: 601 FSG 603
             G
Sbjct: 521 SDG 523



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 162/356 (45%), Gaps = 17/356 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+      +N +M    +A        + +E+ ++GL  ++ +F   ++    + + ++ 
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEG 302

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +  +M        V T + L+  L +     E  LLFD++  R   PN  T+T L+ G
Sbjct: 303 FRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A + +  M+ +G +PD+V +N ++ GL K+G   +A +L   M A G  P+
Sbjct: 363 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPD 422

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             ++T +I   CK                  M+   ++ + M E G   D + + ALI  
Sbjct: 423 KITFTTLIDGCCKDG---------------DMESALEIKRRMVEEGIELDDVAFTALISG 467

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    +A R+  +M+ +GFKP   TY M++  + + G+ +MG K+  EM   G  P 
Sbjct: 468 LCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPG 527

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593
             +Y  L+ GL  Q +   A   L+ ML  G+    + YN      S+ G S  +D
Sbjct: 528 VVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVD 583


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 23/358 (6%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           S+ T+ I + A  AAK    A+ + E M     +A  DT + ++ +L +S +  +A++L 
Sbjct: 86  SVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLV 145

Query: 338 DKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396
           +++  R   P+   Y  ++    +   + EA  +  E  D      VV +N ++ G LK 
Sbjct: 146 ERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEA-DAKHCTSVVTYNSLVLGFLKA 204

Query: 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIM--------IWKFCKQ------------NAAVY 436
            +    IK+F  M   GPSP++ +Y I+        +W+F  +            +   +
Sbjct: 205 RRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTF 264

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496
             LI G     R      L++EM  RGC P+ +TY  L+K +      DE V +++ ++ 
Sbjct: 265 NSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLLD 324

Query: 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN-SYTVLIGGLISQDRSG 555
               P ++TYN +M +  + G  +   +++  M+   C P +  +Y  LI GL  +    
Sbjct: 325 RKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELE 384

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLAR 613
            A   L+ M ++G    V  Y    A   + GR     EL ++M F+G   +   L R
Sbjct: 385 RAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERMPFAGDKVMFRTLVR 442



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 143/327 (43%), Gaps = 19/327 (5%)

Query: 265 VSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVAIF-ELMNKYKFKAGVDTINCLLE 322
           + +L++M E G  LS++     +     A     A+    E  N +  +A V T + L+ 
Sbjct: 36  IELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSLRASVSTYSILVA 95

Query: 323 NLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381
            L  +K   +A  L ++++      +  TY++++   C+   + +A  +   MI +   P
Sbjct: 96  ALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISRNCVP 155

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
           D   ++ ++E L K G+  +A+++ +   AK  +  V                 Y  L+ 
Sbjct: 156 DARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTSVV----------------TYNSLVL 199

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
           GF   RR+     +   M   G  PD  TYN L + +    +   A ++   M + G  P
Sbjct: 200 GFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLP 259

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + T+N ++    +   Y     +  EM+ RGC P+  +YT+L+  L    R+ E  +  
Sbjct: 260 DVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELF 319

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGR 588
           + +L++ +   V  YN   + L +AGR
Sbjct: 320 QRLLDRKLAPNVYTYNTVMSALCKAGR 346



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 6/197 (3%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           ++ G   +  T+NS+++ L    ++   V++++EM  +G   +  T+ I +   A     
Sbjct: 253 NQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNART 312

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTV 353
            + V +F+ +   K    V T N ++  L ++    +A  LF  +       PN  TY  
Sbjct: 313 DECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRA 372

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G C    L  A  + + M  +G  PDV  +  ++    K G+  +A +L E M   G
Sbjct: 373 LIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERMPFAG 432

Query: 414 PSPNVRSYTIMIWKFCK 430
                R+   ++   CK
Sbjct: 433 DKVMFRT---LVRALCK 446


>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
          Length = 508

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 172/387 (44%), Gaps = 34/387 (8%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERF-------RHARRP--AFRFFCWAGDKPGFAHNSRT 247
           N    LDE    +S+ LV +VL +F         AR P  A++FF WA D+ G+ H +  
Sbjct: 126 NTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRARYPRLAYKFFLWAEDQEGYRHGTSM 185

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           YN ++ I     + + M  +LE+M +KGL +S  TF + +     A  R++ V  F   +
Sbjct: 186 YNLILKIFAECGELKAMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKSS 245

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-----TPNLTTYTVLLGGWCRV 361
            + ++   ++ N +L  L    L  E   L + +  +      +P++ TY V++     +
Sbjct: 246 NFNYRPFRNSFNAILHTL----LTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYML 301

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L +  ++ +EM   G  PD+  +N++L  L K  K   A+ L   M   G  P V   
Sbjct: 302 GKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLH- 360

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                         +T LI G      ++       EM ++GC PD + Y  +I      
Sbjct: 361 --------------FTNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAA 406

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              DEA + + +M+  G  P ++TYN ++      G ++    +  +M  RGC P+   Y
Sbjct: 407 GEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVY 466

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKG 568
           + L+  L +  +  EA   ++ M  KG
Sbjct: 467 STLVSRLRNAGKDSEANNIIQYMTNKG 493


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 182/381 (47%), Gaps = 29/381 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFEL 304
           TYN +++    A +F   + + + M  +  +  +  T+   ++   ++   + A  +   
Sbjct: 47  TYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSE 106

Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363
           M      A V T + ++++L +   P+E+ ++L + +     P++  +  ++ G+ R  N
Sbjct: 107 MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 166

Query: 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE--VMKAKGPSPNVRSY 421
           + +A  V+  M++ G+KPD V+++I++ GL KIGK  +++K+     M+A G  PNV ++
Sbjct: 167 MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITF 226

Query: 422 TIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
           + +I   C                    K N   YT LI G     ++    +L ++M +
Sbjct: 227 STLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQ 286

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYE 520
              PPD + YN+LI     +   DEA ++Y+EM   +G +PTI T+N ++  + + G   
Sbjct: 287 ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLG 346

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++  EM  +G   D  +Y +LI GL    +  EA +  ++M EK      +    F 
Sbjct: 347 RANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFV 406

Query: 581 ADLSRAG---RSYVLDELAQK 598
             L + G   ++Y + E  +K
Sbjct: 407 GGLCKTGNIDQAYAVFEATRK 427



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 21/325 (6%)

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
           + +   + + A A    +A+ +FE M        + T N L+ +   +    +A  LF  
Sbjct: 11  DAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQS 70

Query: 340 LKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           +K   R  P+  TY  L+ G C   N   A ++ +EM DK    +V  ++ +++ L+K  
Sbjct: 71  MKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEA 130

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           K  ++ K+ E M A G +P+V ++  ++  F + N                M+   ++ +
Sbjct: 131 KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSN---------------NMEKAREVYQ 175

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMV--RSGFKPTIHTYNMIMKSYF 514
            M E G  PD ++Y+ LI  L KI K+ DE+++I  EM    +G+ P + T++ ++    
Sbjct: 176 HMVESGYKPDNVSYHILIHGLAKIGKL-DESLKILSEMAMRAAGYVPNVITFSTLIHGLC 234

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           +TG  E   +V+  M+  GC P+  +YT LI GL   ++  +A +  E+M +  +    +
Sbjct: 235 RTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAV 294

Query: 575 DYNKFAADLSRAGRSYVLDELAQKM 599
            YN   A   + G     ++L ++M
Sbjct: 295 AYNSLIAGYCKRGSMDEAEKLYREM 319



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 150/347 (43%), Gaps = 25/347 (7%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAV 299
            A N  TY+S++  L +  + E    +LEEM   G    +  F   M  FA +   +KA 
Sbjct: 112 IAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAR 171

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLG 356
            +++ M +  +K    + + L+  L +     E+  +  ++  R   + PN+ T++ L+ 
Sbjct: 172 EVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIH 231

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
           G CR   L +A  V+  M++ G KP+   +  ++ GL +  K   A +LFE M      P
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 417 NVRSYTIMIWKFCKQNA---------------------AVYTCLITGFGNRRRMDIVYDL 455
           +  +Y  +I  +CK+ +                       +  LI GF    ++    +L
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 351

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           + EM  +G   D  TY  LI  +      DEA+ +YK+M    F     +    +    +
Sbjct: 352 VAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCK 411

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           TGN +    V++   + G  P+  ++ +L   LI   R  +A K +E
Sbjct: 412 TGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 1/176 (0%)

Query: 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
           C      Y  ++        +    ++ + M+   C P  +TYN LI          +A+
Sbjct: 6   CAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKAL 65

Query: 489 RIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
            +++ M R    +P   TYN ++     +GN E  RK+  EM  +    +  +Y+ +I  
Sbjct: 66  DLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKS 125

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+ + +  E+YK LEEM+  G    V  +N      +R+       E+ Q M  SG
Sbjct: 126 LVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 3/172 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLL-SMETFKIAMNAFAAAKERKKAVAI 301
           ++  YNS+++   +    +    +  EM G  GL  ++ TF   ++ F    +  +A  +
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 351

Query: 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
              M      A   T   L+  L R+    EA  ++ +++ + F  +  +    +GG C+
Sbjct: 352 VAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCK 411

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
             N+ +A  V+      G  P+     I+ E L+K+G+  DA KL E  KA+
Sbjct: 412 TGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKAR 463


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 176/392 (44%), Gaps = 23/392 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+S+++ L +A+  +  + +L  M + G++    T+   ++ + ++ + K+A
Sbjct: 231 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 290

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +   + M     +  V T + L+  L ++    EA+ +FD +  R   P++ TY  LL G
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     L+E   + + M+  G +PD    NI++    K  K   A+ +F  M+  G +PN
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  +I   CK                     N  VYT LI G     + D   +L+ 
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + + +N++I     +    E+ +++  MVR G KP I TYN ++      G
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   K+   M+  G  PD  +Y  LI G     R  +A    +EM+  G+   ++ YN
Sbjct: 531 KMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 590

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG-KFEVS 608
                L    R+    EL   +  SG + E+S
Sbjct: 591 IILQGLFHTRRTAAAKELYVSITKSGTQLELS 622



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 165/354 (46%), Gaps = 19/354 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TY +++           M ++L+ M   G+      F I + A+A  ++  
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
           +A+ +F  M ++     V     +++ L +S    +A L F+++     TPN+  YT L+
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      +A  +  EM+D+G   + +  N +++   K G+  ++ KLF++M   G  
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ +Y          N  +  C + G     +MD    LL  M   G  PD +TY  LI
Sbjct: 514 PDIITY----------NTLIDGCCLAG-----KMDEATKLLASMVSVGVKPDIVTYGTLI 558

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
               ++ +M D+A+ ++KEMV SG  P I TYN+I++  F T      ++++  + + G 
Sbjct: 559 NGYCRVSRM-DDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 617

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             + ++Y +++ GL   + + EA +  + +    ++     +N     L + GR
Sbjct: 618 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 167/377 (44%), Gaps = 26/377 (6%)

Query: 238 KPGFAHNSRTYNSMM-SILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKER 295
           K GF  ++ T+  ++  +    R  + M  +L  M E G +  + ++   +         
Sbjct: 120 KKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRS 179

Query: 296 KKAVAIFELMNKYKFKAG---VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTY 351
           ++A+ +  +M   +       V + N +L    +     +A   + ++  R   P++ TY
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 239

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + ++   C+ + + +A  V N M+  G  PD + +N +L G    G+  +AI   + M++
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 299

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
            G  PNV +Y+ ++   CK                     + A Y  L+ G+  +  +  
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 359

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           ++ LL  M   G  PD   +N LI     Q+  D+A+ ++ +M + G  P +  Y  ++ 
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
              ++G+ +     +++MI  G  P+   YT LI GL + D+  +A + + EML++G+  
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 572 PVLDYNKFAADLSRAGR 588
             + +N       + GR
Sbjct: 480 NTIFFNSIIDSHCKEGR 496



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 130/301 (43%), Gaps = 26/301 (8%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ T+ I +     A       A    + K  F+    T   LL+ L   K   +A    
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA---M 147

Query: 338 DKLKHRFT-----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDVVAHNIM 389
           D +  R T     P++ +Y  LL G C      EA  + + M D    G  PDVV++N +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L G  K G    A   +  M  +G  P+V +Y+ +I   CK  A               M
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQA---------------M 252

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D   ++L  M + G  PD +TYN+++        P EA+   K+M   G +P + TY+ +
Sbjct: 253 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSL 312

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           M    + G     RK++D M +RG  PD  +Y  L+ G  ++    E +  L+ M+  G+
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 570 K 570
           +
Sbjct: 373 Q 373



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 26/259 (10%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           + TP + TY +L+G  CR   L         ++ KGF+ D +    +L+GL    + SDA
Sbjct: 87  KVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA 146

Query: 403 IKL-FEVMKAKGPSPNVRSYTIMIWKFCKQN-----------------------AAVYTC 438
           + +    M   G  P+V SY  ++   C +N                          Y  
Sbjct: 147 MDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRS 497
           ++ GF      D  Y    EM +RG  PD +TY+++I  L K Q M D+A+ +   MV++
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM-DKAMEVLNTMVKN 265

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P   TYN I+  Y  +G  +       +M   G  P+  +Y+ L+  L    RS EA
Sbjct: 266 GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEA 325

Query: 558 YKYLEEMLEKGMKAPVLDY 576
            K  + M ++G++  +  Y
Sbjct: 326 RKIFDSMTKRGLEPDIATY 344



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 19/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++  L    +++    ++ EM ++G+ L+   F   +++        ++
Sbjct: 441 GLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 500

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F+LM +   K  + T N L++    + K+ +  +LL   +     P++ TY  L+ G
Sbjct: 501 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 560

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CRV  + +A  ++ EM+  G  P+++ +NI+L+GL    + + A +L+  +   G    
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE 620

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           + +Y I++   CK N       +  F N    D+      ++E R       T+N +I  
Sbjct: 621 LSTYNIILHGLCKNNLTDEA--LRMFQNLCLTDL------QLETR-------TFNIMIGA 665

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L+K  +M DEA  ++     +G  P + TY+++ ++  + G+ E    ++  M   GC  
Sbjct: 666 LLKCGRM-DEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSA 724

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           D      ++  L+ +     A  YL  + EK
Sbjct: 725 DSRMLNSIVRKLLQRGDITRAGTYLFMIDEK 755


>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Glycine max]
          Length = 1034

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 209/474 (44%), Gaps = 34/474 (7%)

Query: 154 SDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNL 213
           + G C+      +I   +       +++ RV   I E+  ++ +  +V +E   NLS+ L
Sbjct: 96  TKGVCENAAQNVDILEDAQMGNMGEKDVSRVVSEITEIVRVENDSSSV-EERLENLSYGL 154

Query: 214 VVDV----LERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
             +V    L+R     + A R F W   K GF+H +RTYN+M+ I   A++F  +  ++E
Sbjct: 155 NSEVFHMVLKRCFKVPQLALRVFNWLKLKDGFSHTTRTYNTMLHIAREAKEFGLVKKLVE 214

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK---AGVDTINCLLENLG 325
           EM E G+   + T+ I +N +  A++  +A+  FE M +   +        I C L + G
Sbjct: 215 EMDECGIQKDVNTWTIIINHYGKARKISEALLAFENMKRCGCEPDAVSYGAIICSLCSAG 274

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           +  +  E     + ++     ++  Y +++    R  ++     + N+MI     P+   
Sbjct: 275 KRDIAME--FYNEMVRKDMVLDVRLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEKCV 332

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445
           H  ML+     G   +A++L   +K+K       +Y  ++   CK         I     
Sbjct: 333 HGCMLKSFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRITDALEIVDIMK 392

Query: 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           RR M                 DG  +  +I     +   D A+ +++ M  SG  PTI T
Sbjct: 393 RRDM----------------VDGRVHGIIINGYLGRNDVDRALEVFQCMKESGCVPTIST 436

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           Y  +M   F+   YE    ++DEM+ +G  PD  + T ++ G +SQ+   +A+K  + M 
Sbjct: 437 YTELMLHLFRLDRYEEACMLYDEMLGKGIKPDVVAITAMVAGHVSQNHISDAWKMFKSME 496

Query: 566 EKGMKAPVLDYNKFAADLSRAGRS----YVLDEL-AQKMRFSGKFEVSNVLARW 614
            +G+K     +  F  +L +A ++     VL E+ A K R   K  V +++  W
Sbjct: 497 CQGIKPTWKSFAVFIKELCKASQTDDIVKVLHEMQASKSRIQDK--VLDLVITW 548



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/463 (20%), Positives = 200/463 (43%), Gaps = 66/463 (14%)

Query: 153  DSDGECDGNNSESEITSVSYK----STADPREIERVCKVIDELFSLDRNMEAVLDECGIN 208
            + D + D + +E + + +  K    S  D  EI R+     + +SL   ++  L++  I 
Sbjct: 589  EEDAKVDQSKTEIDCSLIHPKLKNYSKQDVHEIRRILSSSTD-WSL---IQEKLEKSTIQ 644

Query: 209  LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
             S  LV+++L+          +FF W G + G+ H + +YN  + I G  + F+ M S+ 
Sbjct: 645  FSPELVMEILQSCNMHGSSVLKFFSWIGKQTGYRHTAESYNIAIKIAGCGKDFKHMRSLF 704

Query: 269  EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
                         F++  N++    E                     T   ++   GR+ 
Sbjct: 705  -------------FEMRRNSYPITSE---------------------TWTIMIMVYGRTG 730

Query: 329  LPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWC--RVKNLMEAGRVWNEMIDKGFKPDVVA 385
            L + A   F ++K   + P+ +TY  L+   C  + + + +A +++ EMI  G+ PD   
Sbjct: 731  LTEMAMNCFKEMKADDYVPSRSTYKYLIIALCGRKGRKVDDALKIYGEMISAGYVPDKEL 790

Query: 386  HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
                L  L ++G+  DA +  + ++  G +  + SY++ I   C+               
Sbjct: 791  IETYLGCLCEVGRVLDARRCTDSLQNFGYTVPL-SYSLFIRALCRAGKVEEALALHEEVG 849

Query: 432  ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                  +   +  ++ G   + R++     +  M++ G  P    + +LI     +K  +
Sbjct: 850  EEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGITPTIHVFTSLIVHFFKEKQVE 909

Query: 486  EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
            +A+  ++EM+ SG++PTI TY+ +++ Y   G       ++  M  +G  PD  +Y++ +
Sbjct: 910  KAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDIFYRMKLKGPFPDFKTYSMFL 969

Query: 546  GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
              L    +S E  + + EML+ G+    +++      L+R G+
Sbjct: 970  TCLCKVGKSEEGMRLISEMLDSGIVPSTINFRTVVYGLNREGK 1012


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 167/386 (43%), Gaps = 22/386 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G   N+  Y S++++L    +    ++++E+M   K +L    +   ++ F    +   A
Sbjct: 324 GVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSA 383

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ-LLFDKLKHRFTPNLTTYTVLLGG 357
              F+ M +        T   L+  L R+   KEA+ +L + L  R   +  TYTVL+ G
Sbjct: 384 RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDG 443

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + EA +V N M+ +G  P+VV +  + +GL K G    A +L   M  KG   N
Sbjct: 444 YCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELN 503

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +Y  +I   CK                     +   YT LI        +D  +DLL+
Sbjct: 504 ACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQ 563

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM + G  P  +TYN L+    +    +   ++ + M+     P   TYN +MK Y    
Sbjct: 564 EMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGN 623

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           N +   +++  M  R   P++N+Y +LI G        EA  +  EM+EKG +     Y+
Sbjct: 624 NMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYS 683

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG 603
                L++  +     +L   MR  G
Sbjct: 684 ALIRLLNKKKKFVEARKLFHDMRKEG 709



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 148/334 (44%), Gaps = 22/334 (6%)

Query: 268 LEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LG 325
            +EM  KGL +   T+   +N    A E K+A  + + M   +      T   L++    
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446

Query: 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385
           R K+ +  Q+    ++    PN+ TYT L  G C+  ++  A  + +EM +KG + +   
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACT 506

Query: 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------- 431
           +N ++ GL K G    A++    M A G  P+V +YT +I   CK               
Sbjct: 507 YNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML 566

Query: 432 ------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                     Y  L+ GF    R++    LL+ M E+   P+  TYN+L+K   I     
Sbjct: 567 DNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMK 626

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
               IYK M     +P  +TYN+++K + +  + +  +   +EMI +G     +SY+ LI
Sbjct: 627 STTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALI 686

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             L  + +  EA K   +M ++G  A    YN +
Sbjct: 687 RLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFY 720



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 23/304 (7%)

Query: 285 AMNAFAAAKERKKAVAIFE-LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343
           A NA  +     +A+ +F+ L +K      V + N LL+ L  +   ++A+ LFD++   
Sbjct: 237 ACNAVLSRLPLDEAIELFQGLPDK-----NVCSYNILLKVLCGAGRVEDARQLFDEMAS- 290

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
             P++ TY +L+ G+C +  L  A ++ ++M+ +G +P+   +  ++  L   G+ SDA+
Sbjct: 291 -PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDAL 349

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            + E M        V    I+       + AVYT +++GF N+  +        EM+ +G
Sbjct: 350 TVVEDM--------VHHKVIL-------DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKG 394

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
              DG+TY  LI  +       EA ++ +EM+         TY +++  Y + G      
Sbjct: 395 LATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAF 454

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           +V + M++RG  P+  +YT L  GL  Q     A + L EM  KG++     YN     L
Sbjct: 455 QVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGL 514

Query: 584 SRAG 587
            +AG
Sbjct: 515 CKAG 518



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 153/372 (41%), Gaps = 34/372 (9%)

Query: 232 FCWAGD------------KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM 279
           FC  GD            + G A +  TY ++++ L RA + +    +L+EM  + L   
Sbjct: 374 FCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVD 433

Query: 280 E-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           E T+ + ++ +    +  +A  +   M +      V T   L + L +    + A  L  
Sbjct: 434 EVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLH 493

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
           ++ ++    N  TY  L+ G C+   L +A R   +M   G KPDV  +  +++ L K G
Sbjct: 494 EMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSG 553

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC--------------------KQNAAVYT 437
           +   A  L + M   G  P + +Y +++  FC                      NA  Y 
Sbjct: 554 ELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYN 613

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            L+  +     M    ++ K M  R   P+  TYN LIK     +   EA   + EM+  
Sbjct: 614 SLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEK 673

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           GF+ T  +Y+ +++   +   +   RK++ +M + G   + + Y   I    ++D     
Sbjct: 674 GFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEAT 733

Query: 558 YKYLEEMLEKGM 569
               +E++E  +
Sbjct: 734 LALCDELVEASI 745



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 26/222 (11%)

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G  P   A N +L  L       +AI+LF+ +    P  NV SY I++   C        
Sbjct: 230 GISPSPEACNAVLSRL----PLDEAIELFQGL----PDKNVCSYNILLKVLC-------- 273

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
               G G       V D  +  +E   PPD +TY  LI         + AV++  +MV  
Sbjct: 274 ----GAGR------VEDARQLFDEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVAR 323

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G +P    Y  ++      G       V ++M+      D+  YT ++ G  ++     A
Sbjct: 324 GVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSA 383

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            ++ +EM  KG+    + Y      L RAG     +++ Q+M
Sbjct: 384 RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEM 425


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 169/378 (44%), Gaps = 22/378 (5%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAM 286
           A  FF    +   F H   TY +M+  LG  R  + +  +L+ M  +G+   E  F I +
Sbjct: 56  ALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVI 115

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
           NA+  A   ++A+  F  + ++  K  V   N +L+ L      +    +++ +K     
Sbjct: 116 NAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIE 175

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
            N+ TY +LL   C+   +  A ++  EM  KG  PD V++  ++  + ++GK  +A +L
Sbjct: 176 LNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL 235

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
                    S  ++S+             VY  LI GF    +M+ V++L  EM   G  
Sbjct: 236 ---------SMRIKSF-----------VPVYNALINGFCREHKMEEVFELFNEMAVEGID 275

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY+ +I  +      + A+ +  +M   G  P +HT+  +MK YF  G       +
Sbjct: 276 PDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDL 335

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           W+ MI+ G  P+  +Y  LI GL S  +  EA    ++M   G+      Y+      ++
Sbjct: 336 WNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAK 395

Query: 586 AGRSYVLDELAQKMRFSG 603
           AG      E+  KM  +G
Sbjct: 396 AGDLVGASEIWNKMITNG 413



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 172/399 (43%), Gaps = 49/399 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS------------------- 278
           + G   N  TYN ++  L +  + +    +L EM  KG +                    
Sbjct: 171 RDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVE 230

Query: 279 --------METFKIAMNAFAAAKERK-KAVAIFELMNKYKFKAGVD----TINCLLENLG 325
                   +++F    NA      R+ K   +FEL N+   + G+D    T + ++  L 
Sbjct: 231 EARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVE-GIDPDVITYSTVINTLS 289

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                + A  +  K+  R  +PN+ T+T L+ G+     L EA  +WN MI +G +P+ V
Sbjct: 290 EMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTV 349

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           A+N ++ GL   GK  +A+ + + M+  G  PN                  Y+ LI GF 
Sbjct: 350 AYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPN---------------ETTYSTLIDGFA 394

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
               +    ++  +M   GC P+ + Y  ++ ++    M + A+ + + M      P   
Sbjct: 395 KAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTI 454

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T+N  +K    +G  E   KV ++M + GC P+  +Y  ++ GL +  R+ EA + + E+
Sbjct: 455 TFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEI 514

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            E  +K+ ++ YN   +    AG      ++A K+   G
Sbjct: 515 EEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGG 553



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 169/383 (44%), Gaps = 27/383 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TY+++++ L      E  +++L +M  +G   ++ TF   M  +       +A
Sbjct: 273 GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEA 332

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + ++  M +   +      N L+  L       EA  +  K+ ++   PN TTY+ L+ G
Sbjct: 333 LDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDG 392

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  +L+ A  +WN+MI  G  P+VV +  M++ L +    + A+ L E M      PN
Sbjct: 393 FAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPN 452

Query: 418 VRSYTIMI----------WKF----------CKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++   I          W            C  N   Y  ++ G  N +R      ++ 
Sbjct: 453 TITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVG 512

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           E+EE     + +TYN ++       M   A++I  +++  G KP   TYN ++ +Y + G
Sbjct: 513 EIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQG 572

Query: 518 NYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
             +   ++ D + ++G   PD  +YT L+ G+ +     EA  +L++M+ +G+      +
Sbjct: 573 EVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATW 632

Query: 577 NKFA----ADLSRAGRSYVLDEL 595
           N       + L   G  +++D +
Sbjct: 633 NALVRGLFSKLGHLGPIHIVDNI 655



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 46/333 (13%)

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVK 362
           + N   FK    T   +++ LG  +     Q L   +K    + N   + +++  + R  
Sbjct: 63  IANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAG 122

Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
              +A + +  + + G KP V  +N +L+ LL   K      ++  MK  G   NV +Y 
Sbjct: 123 LAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYN 182

Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI----KLM 478
           +++   CK +               R+D    LL EM  +GC PD ++Y  ++    +L 
Sbjct: 183 MLLKALCKND---------------RVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLG 227

Query: 479 KIQKMPDEAVRI--------------------------YKEMVRSGFKPTIHTYNMIMKS 512
           K+++  + ++RI                          + EM   G  P + TY+ ++ +
Sbjct: 228 KVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINT 287

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + GN EM   V  +M  RGC P+ +++T L+ G     R  EA      M+++G +  
Sbjct: 288 LSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPN 347

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            + YN     L   G+      ++QKM  +G F
Sbjct: 348 TVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVF 380


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 189/457 (41%), Gaps = 90/457 (19%)

Query: 217 VLERFRHARRPA--FRFFCWAGDKPGFAHNSRTYNSMMSILGRA-------RQFETMV-- 265
           V E  RH  + +   R F W G + G+ H+  TYN  +  L +A        +F+ M   
Sbjct: 8   VGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRR 67

Query: 266 --------------------------SMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
                                      +L ++ E G+ L++ T+ + ++    A     A
Sbjct: 68  GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA 127

Query: 299 VAIFELMNKYKFKAG------VDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTY 351
           + IF+ M+     AG      V T N LL+ L   +   EA +LF+ + K    PN+ +Y
Sbjct: 128 LEIFKTMS-----AGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + LL G C+   L EA R+W EM++K   PD+VA+   + GL K  + ++A      M  
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVT 242

Query: 412 KGPSPNVRSYTIMIWKFCKQ-------------------------------------NAA 434
           KG   +  +++ +I   CK+                                     +A 
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAE 302

Query: 435 VYTCLITGFGNRRRMD---IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
           ++  LI      +R+    +++  +K M+E  CPP+  TYN ++  +   K  DEA  + 
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            EM   G  P + TY+ ++    + G  +    + +EM + G  PD  +   ++  L   
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +   A  +LE M  +G    ++ YN     L +AGR
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGR 459



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 160/346 (46%), Gaps = 31/346 (8%)

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR----FTPNLTTYT 352
           +A   FE M         +  N L+  + +SK   +  LLF ++K        PNL TY 
Sbjct: 284 EACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYN 343

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
           +++   C+ K L EA  + NEM + G  PDVV ++ +++GL K+GK   A  L E M  +
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE 403

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
           G  P+  S+T         +A++    +       ++D     L+ M+ RG  PD +TYN
Sbjct: 404 GVFPD--SFT---------DASI----LNALSKAGKVDYALSHLETMKARGSTPDLVTYN 448

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
            L+  +      DEA+    +MV +   P + +Y +I+ +  ++G       ++ EM++R
Sbjct: 449 TLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD-LSRAGRSYV 591
           G  PD   Y  L+ GL    R+G     L E+L+  +  P    +K   D L +AG++  
Sbjct: 509 GVLPDTVLYHSLLDGLA---RNGLEDLAL-ELLKTSLCKPDFVMHKMVVDGLCKAGKAED 564

Query: 592 LDELAQKMRFSG----KFEVSNV---LARWAETTKNRVYRKDRIET 630
             E+ ++M  +G     F   NV   L +  +  K R    D  ET
Sbjct: 565 ACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASET 610



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 175/438 (39%), Gaps = 82/438 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
           G   N  TY+ ++    +A + +  + + + M   G  +  + TF   +    + +   +
Sbjct: 103 GVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSE 162

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A  +FE M K   +  V + + LL+ L ++    EA  L++++  +   P+L  YT  + 
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVT 222

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVA-----------------HNIMLEGLLKIGKR 399
           G C+   + EA     +M+ KG K D VA                  N M+E L + G  
Sbjct: 223 GLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGML 282

Query: 400 SDAIKLFEVMKAKG--PS------------------------------------PNVRSY 421
            +A K FE M ++   PS                                    PN+ +Y
Sbjct: 283 DEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETY 342

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            IM+   CK                     +   Y+ L+ G     ++D   DLL+EM +
Sbjct: 343 NIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
            G  PD  T  +++  +      D A+   + M   G  P + TYN ++    + G  + 
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDE 462

Query: 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581
                 +M+   C PD  SYT++I  L    ++  A+   +EM+++G+    + Y+    
Sbjct: 463 AITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLD 522

Query: 582 DLSRAGRSYVLDELAQKM 599
            L+R G    L++LA ++
Sbjct: 523 GLARNG----LEDLALEL 536



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 124/257 (48%), Gaps = 18/257 (7%)

Query: 336 LFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
           LFD L  +  +  ++ TY   L    +      A   + +M  +G+ PD   ++I+L GL
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVY 453
            K G+   A +L   ++  G   NV +Y+++I   CK +               R+D   
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS---------------RVDDAL 128

Query: 454 DLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
           ++ K M   G C PD +T+N+L+K +   +   EA  +++ M ++G +P + +Y+ ++  
Sbjct: 129 EIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDG 188

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             + G  +   ++W+EM+ + C PD  +YT  + GL   +R  EA     +M+ KG KA 
Sbjct: 189 LCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKAD 248

Query: 573 VLDYNKFAADLSRAGRS 589
            + ++     L + G +
Sbjct: 249 AVAFSTVIGILCKKGHA 265



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 141/347 (40%), Gaps = 63/347 (18%)

Query: 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKAVA 300
            H     N M+  L R+   +      EEM  +    S E F   ++A   +K     V 
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL 322

Query: 301 IFELMNKYK---FKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLG 356
           +F+ M   K       ++T N +++NL ++K   EAQ L +++  +  +P++ TY+ L+ 
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 357 GWCRVKNLMEAGRVWNEM------------------------ID-----------KGFKP 381
           G C++  L  A  +  EM                        +D           +G  P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------- 434
           D+V +N +L+GL K G+  +AI     M A   +P+V SYTI+I   C+   A       
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 435 -------------VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                        +Y  L+ G       D+  +LLK      C PD + +  ++  +   
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---SLCKPDFVMHKMVVDGLCKA 559

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
              ++A  + + M  +GF     TY  +++   + G  +  R++ D+
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDD 606



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 16/228 (7%)

Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
           KG++  V  +N  L+ L K      A + F+ M+ +G  P+  +Y+I++   CK      
Sbjct: 32  KGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAG---- 87

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM-V 495
                       +D   +LL ++ E G   + +TY+ +I         D+A+ I+K M  
Sbjct: 88  -----------ELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSA 136

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G  P + T+N ++K             +++ M + GC P+  SY+ L+ GL    R  
Sbjct: 137 GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLD 196

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EA +  EEM+EK     ++ Y  F   L +A R     +  +KM   G
Sbjct: 197 EACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 176/393 (44%), Gaps = 23/393 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+S+++ L +A+  +  + +L  M + G++    T+   ++ + ++ + K+A
Sbjct: 231 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 290

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +   + M     +  V T + L+  L ++    EA+ +FD +  R   P++ TY  LL G
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     L+E   + + M+  G +PD    NI++    K  K   A+ +F  M+  G +PN
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  +I   CK                     N  VYT LI G     + D   +L+ 
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM +RG   + + +N++I     +    E+ +++  MVR G KP I TYN ++      G
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
             +   K+   M+  G  PD  +Y  LI G     R  +A    +EM+  G+   ++ YN
Sbjct: 531 KMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 590

Query: 578 KFAADLSRAGRSYVLDELAQKMRFSG-KFEVSN 609
                L    R+    EL   +  SG + E+S 
Sbjct: 591 IILQGLFHTRRTAAAKELYVSITKSGTQLELST 623



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 165/354 (46%), Gaps = 19/354 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TY +++           M ++L+ M   G+      F I + A+A  ++  
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLL 355
           +A+ +F  M ++     V     +++ L +S    +A L F+++     TPN+  YT L+
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C      +A  +  EM+D+G   + +  N +++   K G+  ++ KLF++M   G  
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           P++ +Y          N  +  C + G     +MD    LL  M   G  PD +TY  LI
Sbjct: 514 PDIITY----------NTLIDGCCLAG-----KMDEATKLLASMVSVGVKPDIVTYGTLI 558

Query: 476 K-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
               ++ +M D+A+ ++KEMV SG  P I TYN+I++  F T      ++++  + + G 
Sbjct: 559 NGYCRVSRM-DDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 617

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             + ++Y +++ GL   + + EA +  + +    ++     +N     L + GR
Sbjct: 618 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 20/269 (7%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L     P++ TY+ ++   C+ + + +A  V N M+  G  PD + +N +L G    G+ 
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            +AI   + M++ G  PNV +Y+ ++   CK                     + A Y  L
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           + G+  +  +  ++ LL  M   G  PD   +N LI     Q+  D+A+ ++ +M + G 
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P +  Y  ++    ++G+ +     +++MI  G  P+   YT LI GL + D+  +A +
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + EML++G+    + +N       + GR
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGR 496



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 130/301 (43%), Gaps = 26/301 (8%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ T+ I +     A       A    + K  F+    T   LL+ L   K   +A    
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA---M 147

Query: 338 DKLKHRFT-----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDVVAHNIM 389
           D +  R T     P++ +Y  LL G C      EA  + + M D    G  PDVV++N +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449
           L G  K G    A   +  M  +G  P+V +Y+ +I   CK  A               M
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQA---------------M 252

Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
           D   ++L  M + G  PD +TYN+++        P EA+   K+M   G +P + TY+ +
Sbjct: 253 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSL 312

Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
           M    + G     RK++D M +RG  PD  +Y  L+ G  ++    E +  L+ M+  G+
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 570 K 570
           +
Sbjct: 373 Q 373



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 26/259 (10%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402
           + TP + TY +L+G  CR   L         ++ KGF+ D +    +L+GL    + SDA
Sbjct: 87  KVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA 146

Query: 403 IKL-FEVMKAKGPSPNVRSYTIMIWKFCKQN-----------------------AAVYTC 438
           + +    M   G  P+V SY  ++   C +N                          Y  
Sbjct: 147 MDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRS 497
           ++ GF      D  Y    EM +RG  PD +TY+++I  L K Q M D+A+ +   MV++
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM-DKAMEVLNTMVKN 265

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P   TYN I+  Y  +G  +       +M   G  P+  +Y+ L+  L    RS EA
Sbjct: 266 GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEA 325

Query: 558 YKYLEEMLEKGMKAPVLDY 576
            K  + M ++G++  +  Y
Sbjct: 326 RKIFDSMTKRGLEPDIATY 344



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 19/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++  L    +++    ++ EM ++G+ L+   F   +++        ++
Sbjct: 441 GLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 500

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F+LM +   K  + T N L++    + K+ +  +LL   +     P++ TY  L+ G
Sbjct: 501 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 560

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CRV  + +A  ++ EM+  G  P+++ +NI+L+GL    + + A +L+  +   G    
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE 620

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           + +Y I++   CK N       +  F N    D+      ++E R       T+N +I  
Sbjct: 621 LSTYNIILHGLCKNNLTDEA--LRMFQNLCLTDL------QLETR-------TFNIMIGA 665

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L+K  +M DEA  ++     +G  P + TY+++ ++  + G+ E    ++  M   GC  
Sbjct: 666 LLKCGRM-DEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSA 724

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           D      ++  L+ +     A  YL  + EK
Sbjct: 725 DSRMLNSIVRKLLQRGDITRAGTYLFMIDEK 755


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 160/367 (43%), Gaps = 18/367 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFA-AAKERKK 297
           G A     Y ++++  GR  QF   + +L  M  E+   S+ T+   +NA A    + + 
Sbjct: 166 GVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEG 225

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
            + +F  M     +  V T N LL       L  EA+++F  +      P++ TY+ L+ 
Sbjct: 226 LLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQ 285

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            + ++  L +   +  EM   G  PD+ ++N++LE   ++G   +A+ +F  M+A G   
Sbjct: 286 TFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAG--- 342

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                       C  NAA Y+ L+  +G   R D V D+  EM+     PD  TYN LI+
Sbjct: 343 ------------CVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQ 390

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           +        E V ++ +MV    +P + TY  ++ +  + G YE  +K+   M  +G  P
Sbjct: 391 VFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVP 450

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
              +YT +I          EA      M E G    V  YN F    +R G     + + 
Sbjct: 451 SSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAIL 510

Query: 597 QKMRFSG 603
            +M  SG
Sbjct: 511 SRMNESG 517



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 155/342 (45%), Gaps = 17/342 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKER 295
           ++ G   +  TY+ ++   G+  + E +  +L EM   G L  + ++ + + A+A     
Sbjct: 269 NESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSI 328

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVL 354
           K+A+ +F  M      A   T + LL   G+     + + +F ++K   T P+  TY +L
Sbjct: 329 KEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNIL 388

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +  +       E   ++++M+++  +P++  +  ++    K G   DA K+   M  KG 
Sbjct: 389 IQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGI 448

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
            P+ ++YT +I  F +  AA+Y   +  F               M E G  P   TYN+ 
Sbjct: 449 VPSSKAYTGVIEAFGQ--AALYEEALVVFNT-------------MNEVGSNPTVETYNSF 493

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I       +  EA  I   M  SG K  +H++N ++K++ Q G YE   K + EM +  C
Sbjct: 494 IHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANC 553

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
            P++ +  V++    S     E+ +  +E+   G+   V+ Y
Sbjct: 554 EPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCY 595



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 14/257 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN   YT+++    R   L +   V++EM   G    V  +  ++    + G+   +++L
Sbjct: 134 PNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLEL 193

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              MK +  SP++ +Y  +I   C +    +  L+              L  EM   G  
Sbjct: 194 LNGMKQERVSPSILTYNTVI-NACARGGLDWEGLL-------------GLFAEMRHEGIQ 239

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TYN L+     + + DEA  +++ M  SG  P I+TY+ +++++ +    E   ++
Sbjct: 240 PDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSEL 299

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
             EM   G  PD  SY VL+          EA     +M   G  A    Y+       +
Sbjct: 300 LREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGK 359

Query: 586 AGRSYVLDELAQKMRFS 602
            GR   + ++  +M+ S
Sbjct: 360 HGRYDDVRDIFLEMKVS 376



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/358 (19%), Positives = 150/358 (41%), Gaps = 20/358 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           ++ TYN ++ + G    F+ +V++  +M E+ +  +MET++  + A       + A  I 
Sbjct: 381 DAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKIL 440

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRV 361
             MN+            ++E  G++ L +EA ++F+ +    + P + TY   +  + R 
Sbjct: 441 LHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARG 500

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
               EA  + + M + G K DV + N +++   + G+  +A+K +  M+     PN  + 
Sbjct: 501 GLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTL 560

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
            +++  +C                   +D   +  +E++  G  P  + Y  ++ L    
Sbjct: 561 EVVLSVYCSAGL---------------VDESEEQFQEIKASGILPSVMCYCLMLALYAKN 605

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ-TGNYEMGRKVWDEMIRRGCCPDDNS 540
              ++A  +  EM+             ++K  F    N+++   V+D++   GC      
Sbjct: 606 DRLNDAYNLIDEMITMRVSDIHQGIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRF 665

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK--FAADLSRAGRSYVLDELA 596
           Y  L+  L    +   A + L E  ++G+   +   +K  ++ D+ R      L  L+
Sbjct: 666 YNALLEALWWMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGGALTALS 723



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 3/182 (1%)

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
           IW  CK N  +YT +IT  G    +D   ++  EM   G       Y A+I         
Sbjct: 130 IW--CKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQF 187

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTV 543
             ++ +   M +    P+I TYN ++ +  + G ++E    ++ EM   G  PD  +Y  
Sbjct: 188 HASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNT 247

Query: 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           L+G    +    EA      M E G+   +  Y+       +  R   + EL ++M   G
Sbjct: 248 LLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGG 307

Query: 604 KF 605
             
Sbjct: 308 NL 309


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 167/366 (45%), Gaps = 23/366 (6%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN 287
           A   + W   +  ++ N+R   +++S+LG+A Q    V +          +++ +   M 
Sbjct: 146 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAMMG 205

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFDKLKHRF 344
            +A      K   + +LM     +  + + N L+      G        +LL +  +   
Sbjct: 206 VYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGI 265

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
            P++ TY  L+    R  NL EA +V+N+M+    +PD+  +N M+    + G   +A +
Sbjct: 266 QPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGR 325

Query: 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFG 444
           LF+ +++KG  P+  +Y  +++ F ++                    +   Y  +I  +G
Sbjct: 326 LFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYG 385

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
            R + D+ + L  +M+  G  PD +TY  LI  +    M  EA  +  EM+ +  KPT+ 
Sbjct: 386 KRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLR 445

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T++ ++  Y + G      + +D M+R G  PD  +Y+V++  L+  + SG+A K  +EM
Sbjct: 446 TFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEM 505

Query: 565 LEKGMK 570
           +    K
Sbjct: 506 VLHSFK 511



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 148/331 (44%), Gaps = 23/331 (6%)

Query: 296 KKAVAIFELMN-KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
           ++A+ ++E +N ++ +      +  +L  LG++     A  +F + +      +  Y  +
Sbjct: 144 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAM 203

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD--AIKLFEVMKAK 412
           +G + R     +   + + M  +G +PD+V+ N ++   LK G      AI+L   ++  
Sbjct: 204 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 263

Query: 413 GPSPN--------------------VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
           G  P+                    V+ Y  M+   C+ +   Y  +I+ +G        
Sbjct: 264 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 323

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
             L K++E +G  PD +TYN+L+     +   D+   I ++MV+ GF     TYN I+  
Sbjct: 324 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 383

Query: 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
           Y + G +++  +++ +M   G  PD  +YTVLI  L   +   EA + + EML   +K  
Sbjct: 384 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPT 443

Query: 573 VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           +  ++      ++AG+    +E    M  SG
Sbjct: 444 LRTFSALICGYAKAGKRVEAEETFDCMLRSG 474



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 14/265 (5%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+H ++PN      +L    +      A  ++    +      V  +N M+    + G+ 
Sbjct: 155 LRHWYSPNARMLATILSVLGKANQEALAVEIFARA-EAASGNTVQVYNAMMGVYARTGRF 213

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
           +   +L ++M+++G  P++ S+  +I    K    V              ++  +LL E+
Sbjct: 214 TKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMV-------------TNLAIELLNEV 260

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  PD +TYN LI     +   +EAV++Y +MV    +P + TYN ++  Y + G  
Sbjct: 261 RRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMS 320

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
               +++ ++  +G  PD  +Y  L+     +    +  +  E+M++ G     + YN  
Sbjct: 321 REAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTI 380

Query: 580 AADLSRAGRSYVLDELAQKMRFSGK 604
                + G+  +  +L   M+ SG+
Sbjct: 381 IHMYGKRGQHDLAFQLYSDMKLSGR 405



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 149/383 (38%), Gaps = 47/383 (12%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERK 296
           K GF  +  TYN+++ + G+  Q +    +  +M   G      T+ + +++   A   K
Sbjct: 367 KMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIK 426

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVLL 355
           +A  +   M   + K  + T + L+    ++    EA+  FD  L+    P+   Y+V+L
Sbjct: 427 EAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 486

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK----- 410
               R     +A +++ EM+   FKPD   + +ML  L K  +  D  K+ + M+     
Sbjct: 487 DILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGM 546

Query: 411 ---------AKGP----SPNVRSYTI---------------------------MIWKFCK 430
                     KG     + N+    I                           ++ K CK
Sbjct: 547 NSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLLSKECK 606

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            + + Y  ++  F N         LL  M+E G  P   T + L+        P+EA ++
Sbjct: 607 LDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKV 666

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
              +   G   +   Y+ ++ +Y + G++ +  +   EM + G  PD   +T  +     
Sbjct: 667 LDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASL 726

Query: 551 QDRSGEAYKYLEEMLEKGMKAPV 573
              + EA   L+ + + G   P+
Sbjct: 727 SQHTSEAIVLLKALRDTGFDLPI 749


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 21/265 (7%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           +TP++   T L+ G+   KN+ +A RV  E+++   +PDV A+N ++ G  K+ +   A 
Sbjct: 109 YTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNQIEAAT 167

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGF 443
           ++   MKA+G  P++ +Y IMI   C +                        YT LI   
Sbjct: 168 QVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEAT 227

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
                ++    LL+EM  RG  PD  TYNA+I+ M  + M + A  +   +   G +P +
Sbjct: 228 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDV 287

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            +YN++++++   G ++ G K+  EM  RGC P+  +Y++LI  L    R  EA   L+ 
Sbjct: 288 ISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 347

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGR 588
           M+EK +      Y+   + L + GR
Sbjct: 348 MIEKELTPDTYSYDPLISALCKEGR 372



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 159/363 (43%), Gaps = 22/363 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMN 306
           YN+++S   +  Q E    +L  M  +G L  + T+ I + +    ++   A+ + + + 
Sbjct: 150 YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLL 209

Query: 307 KYKFKAGVDTINCLLE-NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
                  V T   L+E  +    + +  +LL + L     P++ TY  ++ G C+   + 
Sbjct: 210 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 269

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A  +   +  KG +PDV+++NI+L   L  GK  +  KL   M ++G  PN  +Y+I+I
Sbjct: 270 RAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILI 329

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C+                     +   Y  LI+      R+D+   ++  M   GC 
Sbjct: 330 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCL 389

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + YN ++  +      ++A+ I+ ++   G  P + +YN ++ + +  G+      +
Sbjct: 390 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 449

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
              MI +G  PD+ +Y  LI  L       EA   L++M + G +  V+ YN     L +
Sbjct: 450 VPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 509

Query: 586 AGR 588
             R
Sbjct: 510 VRR 512



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 167/353 (47%), Gaps = 36/353 (10%)

Query: 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR 257
           +EA + E GIN +  L+ ++L R                   G   +  TYN+++  + +
Sbjct: 224 IEATIVEGGINEAMKLLEEMLAR-------------------GLLPDMYTYNAIIRGMCK 264

Query: 258 ARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
               E    ++  +  KG    + ++ I + AF    +  +   +   M     +    T
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 317 INCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            + L+ +L R  ++ +   +L   ++   TP+  +Y  L+   C+   L  A  + + MI
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 384

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
             G  PD+V +N +L  L K G  + A+++F  ++  G  PNV SY  MI       +A+
Sbjct: 385 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI-------SAL 437

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
           ++C     G+R R      ++  M  +G  PD +TYN+LI  +    + +EA+ +  +M 
Sbjct: 438 WSC-----GDRSR---ALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDME 489

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
           +SGF+PT+ +YN+++    +    +    ++ EMI +GC P++ +Y +LI G+
Sbjct: 490 QSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 165/362 (45%), Gaps = 29/362 (8%)

Query: 251 MMSILGR---ARQFETMVSMLEEMGEKG-----LLSMETFKIAMNAFAAAKERKKAVAIF 302
           +M +L R   A +F   +  LE +  KG     +L  +  K     F   K  +KA  + 
Sbjct: 81  LMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIK----GFFNFKNIEKASRVM 136

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E++  +  +  V   N ++    +    + A  + +++K R F P++ TY +++G  C  
Sbjct: 137 EILESHT-EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 195

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + L  A  V ++++     P V+ + I++E  +  G  ++A+KL E M A+G  P++ +Y
Sbjct: 196 RKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY 255

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
             +I   CK+          G   R       +L+  +  +GC PD ++YN L++    Q
Sbjct: 256 NAIIRGMCKE----------GMVER-----AAELITSLTSKGCEPDVISYNILLRAFLNQ 300

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              DE  ++  EM   G +P   TY++++ S  + G  +    V   MI +   PD  SY
Sbjct: 301 GKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSY 360

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
             LI  L  + R   A   ++ M+  G    +++YN   A L + G +    E+  K+R 
Sbjct: 361 DPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRG 420

Query: 602 SG 603
            G
Sbjct: 421 MG 422


>gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 203/453 (44%), Gaps = 38/453 (8%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  I+ +C +I    +    +E  L    I++  + V +VL+        + +FF W+G 
Sbjct: 40  PSNIKSLCHLIATTSA--ATVEHSLQSAAISVIPHDVEEVLKLSYGFPGQSVKFFRWSGR 97

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
                H   ++N ++ ILGR R F+ M   ++ M ++GLLS+ TF    +++ AA   ++
Sbjct: 98  HLNDNHTPYSWNLVVDILGRNRFFDPMWDAVKSMNKEGLLSLATFASVFSSYVAADRIRE 157

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+  FE+M+ Y        +N LL  +  +    +A       K    P+  TY +L+ G
Sbjct: 158 AIMAFEIMDNYGCVRDAFALNSLLSAICSNGRTLDACDYLQVAKKFVRPDTDTYAILMEG 217

Query: 358 WCRVKNLMEAGRVWNEM-IDKGFKP-DVVAHNIML-------EGLLKIGKRSDAIKLFEV 408
           W   K+++ A   + EM I+ G+ P +V A++  L       +GLL      +AIK  + 
Sbjct: 218 WEGEKSMVSAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGHDGLL------EAIKFVDS 271

Query: 409 MKAKGPSPNVRSY---------------------TIMIWKFCKQNAAVYTCLITGFGNRR 447
           M+ +   P VR                        +++ K  +  + +Y  +I     R 
Sbjct: 272 MRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLVVGKVLQPTSEMYNLMIGLCCYRG 331

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
             D    +L EM  +G  PD +TYN L K +   +   EA  ++ EMV++   P     +
Sbjct: 332 DTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLREASSVFAEMVQNECVPEQDNCD 391

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           + +K+Y   G   M  KVW  ++       + +   L+ GL + +R   A KY E+M+ +
Sbjct: 392 LAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLVVGLCNLNRPQVAVKYAEDMIGR 451

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           G+       +K    L +  R YV ++L +K +
Sbjct: 452 GISLSSSTLSKLRQSLVKERREYVYEDLLRKWK 484


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 28/374 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF+ N   + +++  L    +FE+ +  L EM  + +   +     +      KE K + 
Sbjct: 416 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVG-GLCKEGKHSD 474

Query: 300 AI---FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           A+   F L+ K  F A + T N L+  L ++   +EA  L  K+  R F  +  TY  L+
Sbjct: 475 AVELWFRLLEK-GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 533

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   + E  ++  EM+ +G +PD   +N+++ G+ +IGK  +A+ L+   K++   
Sbjct: 534 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 593

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y +MI  +CK                     N+ VY  LI  +         + L
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 456 LKEMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
             +M  +G PP   TY++LI  M  I +M D    I  EM + G  P +  Y  ++  Y 
Sbjct: 654 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI-DEMRKEGLLPNVVCYTALIGGYC 712

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +    V  EM      P+  +YTV+I G         A K L EM+ KG+    +
Sbjct: 713 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 772

Query: 575 DYNKFAADLSRAGR 588
            YN       + G+
Sbjct: 773 TYNVLTNGFCKEGK 786



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 183/474 (38%), Gaps = 96/474 (20%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
           FR+A    FRF    G  P      +T   ++S L +A + E    + E M +     + 
Sbjct: 193 FRNAIG-VFRFLANKGVFP----TVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVY 247

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL---------------- 324
            F  A+NAF    + + A+ +F  M K      V T N L+  L                
Sbjct: 248 LFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKM 307

Query: 325 -----------------GRSKLPK--EAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                            G  KL K  EA  +L + L+  FTPN   Y  L+ G+C++ NL
Sbjct: 308 VKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNL 367

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R+  +M+ KG  P+ V  N +++G  KIG+   A  + E M ++G S N  ++T +
Sbjct: 368 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTI 427

Query: 425 I-W----------------------------------KFCKQ------------------ 431
           I W                                    CK+                  
Sbjct: 428 IHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 487

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N      LI G      M     LLK+M ERG   D +TYN LI     +   +E  +
Sbjct: 488 GANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFK 547

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  EMV+ G +P   TYN+++    + G  +    +W+E   R   P+  +Y V+I G  
Sbjct: 548 LRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYC 607

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             D+  E  K   E+L + ++   + YN       R G +    +L   MR  G
Sbjct: 608 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG 661



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 161/344 (46%), Gaps = 19/344 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           GF  N  T N+++  L +    +  V +L++M E+G +L   T+   ++      + ++ 
Sbjct: 486 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEG 545

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M K   +    T N L+  + R     EA  L+++ K R   PN+ TY V++ G
Sbjct: 546 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 605

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + E  +++ E++ +  + + V +N ++    + G   +A KL + M++KG  P 
Sbjct: 606 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 665

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                           A Y+ LI G  N  RM+    L+ EM + G  P+ + Y ALI  
Sbjct: 666 ---------------TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGG 710

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             K+ +M D+ V + +EM      P   TY +++  Y ++G+ +   K+  EM+ +G  P
Sbjct: 711 YCKLGQM-DKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 769

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
           D  +Y VL  G   + +  E +K  + M ++G+    + Y    
Sbjct: 770 DTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLV 813



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 161/369 (43%), Gaps = 44/369 (11%)

Query: 257 RARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNK------YK 309
           R   F   + +   +  KG+  +++T    +++   A E +K+  +FE M +      Y 
Sbjct: 189 RNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYL 248

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           F   ++            K+    QL FD  K   +PN+ TY  L+ G C+  NL EA R
Sbjct: 249 FSTAINAF------CKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFR 302

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
              +M+  G    ++ +++++ GL+K+ K ++A  + +    KG +PN   Y  +I  +C
Sbjct: 303 FKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYC 362

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAV 488
           K           G   R R D+V         +G  P+ +T N++I+   KI +M ++A 
Sbjct: 363 KMGNL-------GDALRIRGDMV--------SKGINPNSVTLNSIIQGFCKIGQM-EQAE 406

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            I +EM+  GF      +  I+        +E   +   EM+ R   P+D   T L+GGL
Sbjct: 407 CILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGL 466

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG--------------RSYVLDE 594
             + +  +A +    +LEKG  A ++  N     L + G              R +VLD+
Sbjct: 467 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 526

Query: 595 LAQKMRFSG 603
           +      SG
Sbjct: 527 ITYNTLISG 535



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 156/367 (42%), Gaps = 19/367 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N   YN+++    +       + +  +M  KG+  +  T    +  F    + ++A
Sbjct: 346 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQA 405

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             I E M    F         ++  L   S+     + L + L     PN    T L+GG
Sbjct: 406 ECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGG 465

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     +A  +W  +++KGF  ++V  N ++ GL K G   +A++L + M  +G   +
Sbjct: 466 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD 525

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  +I   CK+                +++  + L  EM ++G  PD  TYN LI  
Sbjct: 526 KITYNTLISGCCKEG---------------KVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 570

Query: 478 M-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           M +I K+ DEAV ++ E       P ++TY +++  Y +    E G K++ E++ +    
Sbjct: 571 MCRIGKL-DEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 629

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +   Y  LI        + EA+K  ++M  KG+      Y+     +   GR      L 
Sbjct: 630 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 689

Query: 597 QKMRFSG 603
            +MR  G
Sbjct: 690 DEMRKEG 696



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 126/298 (42%), Gaps = 22/298 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN+++S   +  + E    +  EM ++G+     T+ + ++      +  +A
Sbjct: 521 GFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEA 580

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           V ++           V T   +++   ++   +E + LF +L       N   Y  L+  
Sbjct: 581 VNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRA 640

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CR  N +EA ++ ++M  KG  P    ++ ++ G+  IG+  DA  L + M+ +G  PN
Sbjct: 641 YCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPN 700

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  YT +I  +CK                     N   YT +I G+     M     LL 
Sbjct: 701 VVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLH 760

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           EM  +G  PD +TYN L      +   +E  +I   M + G      TY  ++  + Q
Sbjct: 761 EMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQ 818


>gi|242066162|ref|XP_002454370.1| hypothetical protein SORBIDRAFT_04g029550 [Sorghum bicolor]
 gi|241934201|gb|EES07346.1| hypothetical protein SORBIDRAFT_04g029550 [Sorghum bicolor]
          Length = 952

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 179/411 (43%), Gaps = 61/411 (14%)

Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
           ++E  L   G N + NLV  VL+R    R+  F FF WA   P F H + TYN+M+ I+G
Sbjct: 200 SVEQKLKSLGANYTPNLVNMVLKRCFKFRQLGFWFFHWAKRLPDFHHTTETYNTMLYIVG 259

Query: 257 RARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-------- 307
            AR F  M  ++ EM  E     ++T+ I ++ +  A++  K ++ FE M K        
Sbjct: 260 EARSFGIMEELVGEMDREMCPKDIKTWTILLSKYGKARQIGKMLSTFEAMRKSESIWIDS 319

Query: 308 ----------------------YK-----FKAGVDTINCLLENLGRSKLPKEAQLL---- 336
                                 YK      + G D +  L+  L  S    E   L    
Sbjct: 320 KVYRTVFHALCNADKPELALEFYKDMPSNMEVGTDILRLLMCCLATSDNTTEGVYLIRDD 379

Query: 337 -FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
             D +KH   P    YT  L  +C    L EA +V+ +M +K         N +L GL +
Sbjct: 380 MIDGMKH---PEEYCYTEALRSFCIAGKLGEAWKVFQKMKNKSMANSSALEN-LLRGLCR 435

Query: 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455
            G+  +A+++ E MK                +    N+  ++ LI G+  +       DL
Sbjct: 436 AGRMDEALQVTEYMK----------------RISSLNSTTFSFLINGYLRKGEHTKALDL 479

Query: 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
           L+EM E GC P   +Y  +++ +      +EA  +++EM+++  +P I T+  ++  + +
Sbjct: 480 LREMTEYGCVPLASSYTQVMQHLFAIDQCEEACGLFEEMLKNSVEPDIVTFTALICGHVR 539

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566
           +G+      V+  + + G  P   +YTV +  L    R  EA   L+EMLE
Sbjct: 540 SGHISKAWDVFRNINKNGQKPTLKAYTVFMRELCKVSRHLEAVALLKEMLE 590



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
           ++E +C++           +A L    ++ S NLV  +L+R +   R A +FF W G +P
Sbjct: 698 DVEEICRIQSSSDDWGSTQQA-LQMRSVHFSPNLVDAILKRCKRNSRAALQFFSWVGRRP 756

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLE--EMGEKGL-LSMETFKIAMNAFAAAKERK 296
            +   ++TYN+ M + G A+ F+ M  + +  EM E G   ++ TF   +  + A     
Sbjct: 757 YYMPTTKTYNTAMKLAGSAKDFKHMRYLYKEMEMKENGCEPTVVTFSALIRGYMAMGMVS 816

Query: 297 KAVAIFELM 305
           +A A+F+ M
Sbjct: 817 EAWAVFQQM 825



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%)

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           EM + G +P VV  + ++ G + +G  S+A  +F+ MK +GP+P+  +Y++ +   CK
Sbjct: 789 EMKENGCEPTVVTFSALIRGYMAMGMVSEAWAVFQQMKMRGPAPDFETYSMFMSCLCK 846



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM-ETFKIAMNAFAAAKERKKAVAIF 302
           NS T++ +++   R  +    + +L EM E G + +  ++   M    A  + ++A  +F
Sbjct: 456 NSTTFSFLINGYLRKGEHTKALDLLREMTEYGCVPLASSYTQVMQHLFAIDQCEEACGLF 515

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           E M K   +  + T   L+    RS    +A  +F  + K+   P L  YTV +   C+V
Sbjct: 516 EEMLKNSVEPDIVTFTALICGHVRSGHISKAWDVFRNINKNGQKPTLKAYTVFMRELCKV 575

Query: 362 KNLMEAGRVWNEMIDKGFKP 381
              +EA  +  EM++  F+P
Sbjct: 576 SRHLEAVALLKEMLEYDFRP 595



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           EM+E GC P  +T++ALI+      M  EA  ++++M   G  P   TY+M M
Sbjct: 789 EMKENGCEPTVVTFSALIRGYMAMGMVSEAWAVFQQMKMRGPAPDFETYSMFM 841



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMV--RSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           P   TYN  +KL    K       +YKEM    +G +PT+ T++ +++ Y   G      
Sbjct: 760 PTTKTYNTAMKLAGSAKDFKHMRYLYKEMEMKENGCEPTVVTFSALIRGYMAMGMVSEAW 819

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGL 548
            V+ +M  RG  PD  +Y++ +  L
Sbjct: 820 AVFQQMKMRGPAPDFETYSMFMSCL 844


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 129/245 (52%), Gaps = 16/245 (6%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           +TP++   T L+ G+   KN+ +A RV  E+++   +PDV A+N ++ G  K+ +   A 
Sbjct: 99  YTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNRIEAAT 157

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           ++   MKA+G  P++ +Y IMI   C               NRR++ +   +L ++    
Sbjct: 158 QVLNRMKARGFLPDIVTYNIMIGSLC---------------NRRKLGLALKVLDQLLLDN 202

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
           C P  +TY  LI+   ++   +EA+++ +EM+  G  P ++TYN I++   + G ++ G 
Sbjct: 203 CMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGE 262

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K+  EM  RGC P+  +Y++LI  L    R  EA   L+ M+EK +      Y+   + L
Sbjct: 263 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 322

Query: 584 SRAGR 588
            + GR
Sbjct: 323 CKEGR 327



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 146/317 (46%), Gaps = 34/317 (10%)

Query: 251 MMSILGR---ARQFETMVSMLEEMGEKG-----LLSMETFKIAMNAFAAAKERKKAVAIF 302
           +M +L R   A +F   +  LE +  KG     +L  +  K     F   K  +KA  + 
Sbjct: 71  LMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIK----GFFNFKNIEKASRVM 126

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
           E++  +  +  V   N ++    +    + A  + +++K R F P++ TY +++G  C  
Sbjct: 127 EILESHT-EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR 185

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           + L  A +V ++++     P V+ + I++E  +  G  ++A+KL E M A+G  P++ +Y
Sbjct: 186 RKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY 245

Query: 422 TIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
             +I   CK+                    N   Y+ LI+      R+D    +LK M E
Sbjct: 246 NAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 305

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521
           +   PD  +Y+ LI  +  +   D A+ I   M+ +G  P I  YN I+ +  + GN   
Sbjct: 306 KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 365

Query: 522 GRKVWDEMIRRGCCPDD 538
             ++++++   GC P+D
Sbjct: 366 ALEIFNKLRGMGCPPND 382



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 37/226 (16%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKA 298
           GF  +  TYN M+  L   R+    + +L+++  +  + ++ T+ I + A        +A
Sbjct: 167 GFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEA 226

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + + E M        + T N ++  + +  +  E + L  ++  R   PN  TY++L+  
Sbjct: 227 MKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISS 286

Query: 358 WCRVKNLMEAGRVWNEMIDK-----------------------------------GFKPD 382
            CR   + EA  V   MI+K                                   G  PD
Sbjct: 287 LCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPD 346

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428
           +V +N +L  L K G  + A+++F  ++  G  PN     +  W+ 
Sbjct: 347 IVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNDGERKLWSWQI 392


>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
          Length = 637

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 174/412 (42%), Gaps = 56/412 (13%)

Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM-N 287
           F+     G KP       TY  +++ L   R FE++ S+L E+   G+     F  A+ N
Sbjct: 90  FKHLMDEGHKPSLV----TYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALIN 145

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFT 345
           AF  AK   +A+  F  M          T N L++  G    P+E+Q +FD +  +    
Sbjct: 146 AFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVR 205

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN------------------ 387
           PNLTTY +L+  WC  +NL EA  V  +M   GF+PD+V +N                  
Sbjct: 206 PNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEEL 265

Query: 388 ----------------IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431
                           I++ G  + G+  +A++  + MK  G  PNV             
Sbjct: 266 IVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNV------------- 312

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
              ++  L+ GF +   M  V  +L  M++ G  PD +TY+  +          + + ++
Sbjct: 313 --VIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVF 370

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
            +M+ +G +P    Y+++ K + +    E    +  +M   G CP+  ++T +I G  S 
Sbjct: 371 DKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSV 430

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
                A +  ++M + G+   +  +       S   + +  +E+ Q MR +G
Sbjct: 431 ADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETG 482



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 152/352 (43%), Gaps = 25/352 (7%)

Query: 217 VLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK 274
           ++  F  A+R   A   F W     G    + T+N+++   G   + E    + + MG +
Sbjct: 143 LINAFVEAKRMGEAINTF-WKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVE 201

Query: 275 GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           G +  ++ T+ I + A+   +  ++A  +   M    F+  + T N +      +     
Sbjct: 202 GSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWR 261

Query: 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
           A+ L  +++ R   +  T+ +++GG+CR   L EA R   +M D G  P+VV  N +L+G
Sbjct: 262 AEELIVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNVVIFNTLLKG 321

Query: 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYT--------------------IMIWKFCKQN 432
            L     +   K+  +MK  G  P++ +Y+                     MI    + +
Sbjct: 322 FLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPD 381

Query: 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492
             VY+ L  GF   ++ +   DLL +M   G  P+ +T+  +I         + A+R+Y 
Sbjct: 382 PQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYD 441

Query: 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
           +M +SG  P + T+  ++  Y +        +V   M   G  P  ++Y ++
Sbjct: 442 KMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLI 493



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 51/235 (21%)

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K   +A  V+  ++D+G KP +V + I+L                               
Sbjct: 81  KKPYQAHSVFKHLMDEGHKPSLVTYTILL------------------------------- 109

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                              T   N+R  + +  LL E+E  G  PD + +NALI      
Sbjct: 110 -------------------TALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEA 150

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNS 540
           K   EA+  + +M  SG  PT  T+N ++K Y   G  E  ++V+D M   G   P+  +
Sbjct: 151 KRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTT 210

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           Y +L+          EA+  + +M   G +  ++ YN  A+  +    ++  +EL
Sbjct: 211 YNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEEL 265



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 91/192 (47%), Gaps = 4/192 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   +N+++     A     +  +L  M + G+   + T+   +N F++     K 
Sbjct: 307 GSVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNTFSSLGHMAKC 366

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + +F+ M +   +      + L +   R++ P++A+ L  ++ H    PN+ T+T ++ G
Sbjct: 367 MHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISG 426

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           WC V ++  A RV+++M   G  P++     ++ G  +  +   A ++ ++M+  G  P 
Sbjct: 427 WCSVADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKPK 486

Query: 418 VRSYTIM--IWK 427
             +Y ++   WK
Sbjct: 487 QSTYCLIADAWK 498


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 159/326 (48%), Gaps = 17/326 (5%)

Query: 265 VSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           +++++ M  KG    + T+ + +N      +   A  +   M + K + GV   N +++ 
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           L + K   +A  LF +++ +   PN+ TY+ L+   C      +A R+ ++MI++   PD
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           V   + +++  +K GK  +A KL++ M  +   P++ +Y+ +I  FC  +          
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD---------- 170

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
                R+D    + + M  + C PD +TYN LIK     K  +E + +++EM + G    
Sbjct: 171 -----RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 225

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
             TYN++++  FQ G+ +M ++++ EM+  G  P+  +Y  L+ GL    +  +A    E
Sbjct: 226 TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 285

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGR 588
            +    M+  +  YN     + +AG+
Sbjct: 286 YLQRSKMEPTIYTYNIMIEGMCKAGK 311



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 176/383 (45%), Gaps = 30/383 (7%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFEL 304
           TY  +++ L +    +   ++L +M E+G L   +  +   ++     K    A+ +F+ 
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 76

Query: 305 MNKYKFKAGVDT----INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
           M     +  V T    I+CL  N GR      ++LL D ++ +  P++ T++ L+  + +
Sbjct: 77  METKGIRPNVVTYSSLISCLC-NYGR--WSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
              L+EA ++++EM+ +   P +V ++ ++ G     +  +A ++FE M +K   P+V +
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 193

Query: 421 YTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y  +I  FCK                     N   Y  LI G       D+  ++ KEM 
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
             G PP+ +TYN L+  +      ++A+ +++ + RS  +PTI+TYN++++   + G  E
Sbjct: 254 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 313

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
            G  ++  +  +G  PD  +Y  +I G   +    EA    +EM E G       YN   
Sbjct: 314 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 373

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
               R G      EL ++MR  G
Sbjct: 374 RARLRDGDREASAELIKEMRSCG 396



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 15/258 (5%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           P+L TY V++ G C+  +   A  + N+M     +P V+ +N +++GL K     DA+ L
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           F+ M+ KG  PNV +Y+ +I   C               N  R      LL +M ER   
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLC---------------NYGRWSDASRLLSDMIERKIN 118

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  T++ALI     +    EA ++Y EMV+    P+I TY+ ++  +      +  +++
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           ++ M+ + C PD  +Y  LI G     R  E  +   EM ++G+    + YN     L +
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238

Query: 586 AGRSYVLDELAQKMRFSG 603
           AG   +  E+ ++M   G
Sbjct: 239 AGDCDMAQEIFKEMVSDG 256



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 171/369 (46%), Gaps = 29/369 (7%)

Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
           D  F+L   ME    E G+ L +N ++D L +++H    A   F     K G   N  TY
Sbjct: 33  DLAFNLLNKMEQGKLEPGV-LIYNTIIDGLCKYKHMD-DALNLFKEMETK-GIRPNVVTY 89

Query: 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307
           +S++S L    ++     +L +M E+ +   + TF   ++AF    +  +A  +++ M K
Sbjct: 90  SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 149

Query: 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL--KHRFTPNLTTYTVLLGGWCRVKNLM 365
                 + T + L+          EA+ +F+ +  KH F P++ TY  L+ G+C+ K + 
Sbjct: 150 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVE 208

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           E   V+ EM  +G   + V +NI+++GL + G    A ++F+ M + G  PN+ +Y  ++
Sbjct: 209 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 268

Query: 426 WKFCK----QNAAV----------------YTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              CK    + A V                Y  +I G     +++  +DL   +  +G  
Sbjct: 269 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 328

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD + YN +I     +   +EA  ++KEM   G  P    YN ++++  + G+ E   ++
Sbjct: 329 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAEL 388

Query: 526 WDEMIRRGC 534
             EM  R C
Sbjct: 389 IKEM--RSC 395



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 38/182 (20%)

Query: 455 LLKEMEERGCPPDGLT-----------------------------------YNALIKLMK 479
           L+  M  +GC PD +T                                   YN +I  + 
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
             K  D+A+ ++KEM   G +P + TY+ ++      G +    ++  +MI R   PD  
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +++ LI   + + +  EA K  +EM+++ +   ++ Y+          R   LDE  Q  
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR---LDEAKQMF 179

Query: 600 RF 601
            F
Sbjct: 180 EF 181


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 148/311 (47%), Gaps = 21/311 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   +N +     R+   A+F  M +   +  + T NCL+    R+   K A+LLFD++
Sbjct: 75  TYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEM 134

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             +    N+ +Y +L+ G CR   L +A +++  M  +G +P +V  N++++G  K GK 
Sbjct: 135 PVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKM 194

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCL 439
           ++A+  F  MKA G  P+V +Y  +I  FC+                         YT L
Sbjct: 195 ANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTIL 254

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I  F     MD  + +L EME+ G   D  +Y  L+  + ++     A ++++ M   G 
Sbjct: 255 IAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGV 314

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP    Y+M++  Y + G+     ++  EM + G  P+  SY + I  L ++ +  EA  
Sbjct: 315 KPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEA 374

Query: 560 YLEEMLEKGMK 570
            +++M   G++
Sbjct: 375 LIDDMEHAGLQ 385



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 17/259 (6%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PNL TY  L+G WCR      A  +++EM  KG   +VV++NI++ GL +  K  DA++L
Sbjct: 106 PNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQL 165

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           FE M+ +G  P++ ++ +               LI G+G   +M        +M+  G P
Sbjct: 166 FEAMRREGIRPSIVTFNL---------------LIDGYGKAGKMANALHFFNQMKAAGLP 210

Query: 466 PDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           P  +TYN LI    +++ +   AVR + +M   G  PT  TY +++ ++ +    +    
Sbjct: 211 PSVVTYNELICGFCRVRDIA-RAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFM 269

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +  EM + G   D  SY VL+  L  + +   A K  + M  KG+K   + Y+       
Sbjct: 270 MLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYG 329

Query: 585 RAGRSYVLDELAQKMRFSG 603
           R G SY    L  +MR +G
Sbjct: 330 REGSSYKALRLIMEMRKNG 348



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 17/298 (5%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           + G   N  TYN ++    R  +F++   + +EM  KG++ ++ ++ I +       + K
Sbjct: 101 RDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLK 160

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
            AV +FE M +   +  + T N L++  G++     A   F+++K     P++ TY  L+
Sbjct: 161 DAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELI 220

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G+CRV+++  A R + +M ++G  P  V + I++    K  +   A  +   M+  G  
Sbjct: 221 CGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLE 280

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
            +V+SY +++   C +                +M     L + M+ +G  P+ + Y+ +I
Sbjct: 281 VDVQSYGVLLHALCMEG---------------KMMHARKLFQSMDLKGVKPNSVLYDMMI 325

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533
                +    +A+R+  EM ++G  P + +Y + ++     G  +    + D+M   G
Sbjct: 326 YGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAG 383



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 22/278 (7%)

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           ++   T L+   C+  ++ EA RV++ M   G  P+ V +  ++ G    G R     LF
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALF 96

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNR 446
             M+  G  PN+ +Y  +I ++C+                     N   Y  LI G    
Sbjct: 97  AEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRH 156

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
            ++     L + M   G  P  +T+N LI    K  KM + A+  + +M  +G  P++ T
Sbjct: 157 SKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMAN-ALHFFNQMKAAGLPPSVVT 215

Query: 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
           YN ++  + +  +     + + +M  RG  P   +YT+LI     ++    A+  L EM 
Sbjct: 216 YNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEME 275

Query: 566 EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           + G++  V  Y      L   G+     +L Q M   G
Sbjct: 276 KAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKG 313



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 17/265 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G  HN  +YN +++ L R  + +  V + E M  +G+  S+ TF + ++ +  A +   A
Sbjct: 138 GVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANA 197

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           +  F  M        V T N L+    R +    A   F  +K R   P   TYT+L+  
Sbjct: 198 LHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAA 257

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +   +  A  + +EM   G + DV ++ ++L  L   GK   A KLF+ M  KG  PN
Sbjct: 258 FAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPN 317

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              Y +MI+ + ++ ++ Y  L               L+ EM + G  P+  +Y   I+L
Sbjct: 318 SVLYDMMIYGYGREGSS-YKAL--------------RLIMEMRKNGLIPNVASYCLTIRL 362

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPT 502
           +  +    EA  +  +M  +G + +
Sbjct: 363 LCNEGKCQEAEALIDDMEHAGLQTS 387


>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
 gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 172/393 (43%), Gaps = 27/393 (6%)

Query: 200 AVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR 259
           A LDE  +    +LV   +   R   + +   F W G+K G A +    N M+ +LG  +
Sbjct: 104 AALDEFDVKADLDLVYSAIWVLRDDWKSSLLAFKW-GEKVG-AIDEEICNLMIWVLGNHK 161

Query: 260 QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319
           +F T  S++ E+    L SM+   + ++ +A A E  KA+  F +M K++     +  + 
Sbjct: 162 KFSTAWSLIRELHGSLLNSMQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHV 221

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK-NLMEAGRVWNEMIDKG 378
           LL +L +    +EA+      K  F     ++ ++L GWC V  ++ EA R+W EM    
Sbjct: 222 LLNSLCKYGNIEEAEEFMFVNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREMSKCC 281

Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQN------ 432
             PD  ++  M+    K G   D+++ ++ MK +   P+V  Y  + +   ++N      
Sbjct: 282 ILPDSTSYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTRENCFNEAL 341

Query: 433 --------------AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478
                         +  Y  LI+      ++D   D+L  M E    P   TY++ I+  
Sbjct: 342 KILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTEDNISPTIETYHSFIQAA 401

Query: 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
              KM   +  + K M + G  PT  T+ ++    F+    E    VW EM R    P  
Sbjct: 402 D-SKM---SFELLKRMRQDGLGPTEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSC 457

Query: 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
             Y+VLI GL +     +A +  +EM+  G  A
Sbjct: 458 EHYSVLIQGLATCGHLKKARELYDEMILHGFIA 490


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 161/344 (46%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   +LE+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEEN 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  + +   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           ++  +L   M+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ K+M  +   PD +TYN LI  +  +    +A  +  EM+  G 
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDG 411



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 22/304 (7%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M++F    E + A ++F+ + K+  +  
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+    +     E   L + ++     P++ TY+VL+ G C+   + +A  +++
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+DKG  P+ V    +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK+ 
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++  K M +     D + Y 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRD 410

Query: 533 GCCP 536
           G  P
Sbjct: 411 GYKP 414



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +     +A +LFD++  +   PN  T+T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I   CK+                    +   YT LI+G     R      +L+
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           EM   G  P+  TY  +I     +       ++ KEM R G+KP++ T
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 15/260 (5%)

Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403
           + P++ TYT ++ G C++   + A  ++ +M + G +PDVV ++ +++ L K  + ++A+
Sbjct: 6   YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 65

Query: 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
            +F  MKAKG SPN+ +Y                 LI G  N  R      +L EM    
Sbjct: 66  DIFSYMKAKGISPNIFTYN---------------SLIQGLCNFSRWREASAMLNEMMSLN 110

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+ +T++ LI +   +    EA  + K M   G +P + TY+ +M  Y         R
Sbjct: 111 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEAR 170

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K++D MI +GC PD  SY +LI G     R GEA +   EM+ +G+   ++ YN     L
Sbjct: 171 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGL 230

Query: 584 SRAGRSYVLDELAQKMRFSG 603
            + GR     +L + M  +G
Sbjct: 231 CQLGRLREAHDLFKNMLTNG 250



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 150/320 (46%), Gaps = 22/320 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G+  +  TY ++++ L +  +      + ++MGE G    + T+   +++    +   +A
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           + IF  M        + T N L++ L      +EA  + +++      PN+ T+++L+  
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 124

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+  N+ EA  V   M + G +P+VV ++ ++ G     +  +A KLF+VM  KG  P+
Sbjct: 125 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
           V SY I+I  +CK                     +   Y  LI G     R+   +DL K
Sbjct: 185 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 244

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M   G  PD  TY+ L+     Q    +A R+++ M  +  KP +  YN+++ +  ++ 
Sbjct: 245 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSR 304

Query: 518 NYEMGRKVWDEMIRRGCCPD 537
           N +  RK++ E+  +G  P+
Sbjct: 305 NLKEARKLFSELFVQGLQPN 324



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 152/303 (50%), Gaps = 19/303 (6%)

Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
           ++++ ++D L + R     A   F +   K G + N  TYNS++  L    ++    +ML
Sbjct: 46  VTYSTIIDSLCKDRRVNE-ALDIFSYMKAK-GISPNIFTYNSLIQGLCNFSRWREASAML 103

Query: 269 EEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327
            EM    ++ ++ TF + +N F       +A  + + M +   +  V T + L+      
Sbjct: 104 NEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 163

Query: 328 KLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386
               EA+ LFD +  +   P++ +Y +L+ G+C+ K + EA +++NEMI +G  PD+V++
Sbjct: 164 AEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 223

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
           N +++GL ++G+  +A  LF+ M   G  P++ +Y+I++  FCKQ          G+  +
Sbjct: 224 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQ----------GYLAK 273

Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506
                 + L + M+     P+ + YN LI  M   +   EA +++ E+   G +P +  +
Sbjct: 274 -----AFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHW 328

Query: 507 NMI 509
            + 
Sbjct: 329 KLF 331



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 16/300 (5%)

Query: 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD 338
           + T+   +N      E   A  +F+ M +   +  V T + ++++L + +   EA  +F 
Sbjct: 10  VHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFS 69

Query: 339 KLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397
            +K +  +PN+ TY  L+ G C      EA  + NEM+     P++V  ++++    K G
Sbjct: 70  YMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEG 129

Query: 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457
              +A  + + M   G  PNV +Y+ ++  +  Q           F  R+  D+      
Sbjct: 130 NVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV--------FEARKLFDV------ 175

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
            M  +GC PD  +YN LI      K   EA +++ EM+  G  P I +YN ++    Q G
Sbjct: 176 -MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 234

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
                  ++  M+  G  PD  +Y++L+ G   Q    +A++    M    +K  ++ YN
Sbjct: 235 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 294



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 494 MVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           MV  G++P +HTY  I+    + G       ++ +M   GC PD  +Y+ +I  L    R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR----SYVLDEL 595
             EA      M  KG+   +  YN     L    R    S +L+E+
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 106


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 168/401 (41%), Gaps = 41/401 (10%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N   YN+++  L + RQ     ++  EM  KG+   + T+   ++A     E K    + 
Sbjct: 200 NVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLL 259

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
             M   K    V + N +++ L +     EA  + DK+  R   PN+ TYT L+ G C +
Sbjct: 260 NEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLL 319

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK-------------------RSDA 402
             + EA +V++ M+ KG  P+V+++N ++ G  KI +                     +A
Sbjct: 320 SEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEA 379

Query: 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCK--------------------QNAAVYTCLITG 442
           +K+F+ M  KG  PNV SY  +I  +CK                     +   Y+ LI G
Sbjct: 380 VKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHG 439

Query: 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502
             +  R+     L  EM      P+ +TY  L+  +   +   EA+ + K +  S   P 
Sbjct: 440 LCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPD 499

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           I   N+ +    + G  E  R ++  +  +G  PD  +Y+++I GL  +    EA K   
Sbjct: 500 IQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFR 559

Query: 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
           EM E G       YN       R   +    +L Q+M   G
Sbjct: 560 EMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 600



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 20/301 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQLLFD 338
           F   + + A  K     +++   M+ +     + T++ L+    +L R            
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123

Query: 339 KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           KL H+  P+  T+T L+ G C    + EA  ++++MI +GF+PDVV +  ++ GL K+G 
Sbjct: 124 KLGHQ--PDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGN 181

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
            S AI+L   M  K   PNV +Y  +I   CK                R++   ++L  E
Sbjct: 182 TSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKD---------------RQVTEAFNLFSE 226

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  +G  PD  TYN+LI  +           +  EMV S   P + ++N ++ +  + G 
Sbjct: 227 MVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGK 286

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                 V D+MI+RG  P+  +YT L+ G        EA K  + M+ KG    V+ YN 
Sbjct: 287 VTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNT 346

Query: 579 F 579
            
Sbjct: 347 L 347



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 163/357 (45%), Gaps = 10/357 (2%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           GF  +  TY ++++ L +       + +L  M +K    ++  +   +++    ++  +A
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F  M        + T N L+  L    +    A LL + +  +  P++ ++  ++  
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   + EA  V ++MI +G +P+VV +  +++G   + +  +A+K+F+ M  KG  PN
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340

Query: 418 VRSYTIMIWKFCK----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473
           V SY  +I  +CK      A  YT L+        MD    +   M  +GC P+ ++YN 
Sbjct: 341 VISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNT 400

Query: 474 LIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           LI    KIQ++ D+A+ ++ EM R    P   TY+ ++         +    ++ EM+  
Sbjct: 401 LINGYCKIQRI-DKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVAC 459

Query: 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD-LSRAGR 588
              P+  +Y +L+  L       EA   L+  +E     P +  N  A D + RAG 
Sbjct: 460 SQIPNLVTYRILLDYLCKNRYLAEAMALLKA-IEGSNLDPDIQVNNIAIDGMCRAGE 515



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 21/289 (7%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y  +M         +  V + + M  KG + ++ ++   +N +   +   KA+ +F  M 
Sbjct: 363 YTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC 422

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           + +      T + L+  L   +  ++A  LF ++      PNL TY +LL   C+ + L 
Sbjct: 423 RQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLA 482

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA  +   +      PD+  +NI ++G+ + G+   A  LF  + +KG  P+V +Y+IMI
Sbjct: 483 EAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMI 542

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
              C+               R  +D    L +EM+E GC  +G  YN + +         
Sbjct: 543 NGLCR---------------RGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETS 587

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
            A+++ +EMV  GF     T  + +K     G  +  +++    +R GC
Sbjct: 588 RAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQI----LRNGC 632



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 15/209 (7%)

Query: 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
           +N M+     P  V  N +L  + K+   S  + L   M + G  PN+ +  I+I  FC 
Sbjct: 49  FNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCH 108

Query: 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            N               R+   + +L ++ + G  PD  T+  LI+ + ++    EA+ +
Sbjct: 109 LN---------------RVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHL 153

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550
           + +M+  GF+P + TY  ++    + GN     ++   M+++ C P+  +Y  +I  L  
Sbjct: 154 FDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCK 213

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKF 579
             +  EA+    EM+ KG+   +  YN  
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSL 242



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 58/125 (46%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  + +N L+  +   K     + +  +M   G  P I+T ++++ S+           
Sbjct: 58  PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFS 117

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++++ G  PD  ++T LI G+  + + GEA    ++M+ +G +  V+ Y      L 
Sbjct: 118 VLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLC 177

Query: 585 RAGRS 589
           + G +
Sbjct: 178 KVGNT 182


>gi|357166306|ref|XP_003580667.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Brachypodium distachyon]
          Length = 441

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 169/382 (44%), Gaps = 30/382 (7%)

Query: 214 VVDVLERFRHARRPAFRFFCWAGDKPG--FAHNSRTYNSMMSILGRARQFETMVSML--- 268
           V++ L  + +  R A  FF W+    G      + T +  + ILG+  +F    S+L   
Sbjct: 37  VLETLSLYTNDWRRALDFFHWSASPAGANLPPTAATLSRAIDILGKHFEFPLATSLLLSH 96

Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
            +  +   L     +  +N  AAA     AV +FE            + + L++ L   +
Sbjct: 97  HDPSDPAFLR-PALRALLNRLAAANLVDDAVRVFESTAGSIGLRDEASFHLLIDALCDHR 155

Query: 329 LPKEAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
              EA  L F K    F P   T+ +LL GW + +      + W +M ++G   D+ +++
Sbjct: 156 RVDEAHHLCFGKAPPPFPPGTKTHNLLLRGWAKTRAWTRLRQHWFDMDNRGVAKDLHSYS 215

Query: 388 IMLEGLLKIGKRSDAIKLFEVMK--------------------AKGPSPNVRSYTIMIWK 427
           I ++ L K GK   A+K+F+ MK                    A+G   +VR Y  M+  
Sbjct: 216 IYMDALAKSGKPWKAVKVFKEMKQKRLPVDIVAYNTAIHAIGLAQGVDFSVRLYRQMVDA 275

Query: 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
            CK N A +  ++       R    Y  +++M + GC P+ LTY+   + +     P E 
Sbjct: 276 GCKPNTATFNTIVKLLCKEGRFREGYAFVQQMHKAGCEPNVLTYHCFFQYLS---RPQEV 332

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547
           + ++++M+  G +P + TY M++K + + G       VW  M  +G  PD  +Y  LI  
Sbjct: 333 LVLFEKMLERGCRPRMDTYVMLIKRFGRWGFLRPVFFVWKTMEEQGLSPDAFAYNTLIDA 392

Query: 548 LISQDRSGEAYKYLEEMLEKGM 569
           L+ +     A KY EEML KG+
Sbjct: 393 LLEKGMVDLARKYDEEMLAKGL 414



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 124/294 (42%), Gaps = 22/294 (7%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLE 269
           S +L++D L    H R       C+    P F   ++T+N ++    + R +  +     
Sbjct: 143 SFHLLIDAL--CDHRRVDEAHHLCFGKAPPPFPPGTKTHNLLLRGWAKTRAWTRLRQHWF 200

Query: 270 EMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
           +M  +G+   + ++ I M+A A + +  KAV +F+ M + +    +   N  +  +G ++
Sbjct: 201 DMDNRGVAKDLHSYSIYMDALAKSGKPWKAVKVFKEMKQKRLPVDIVAYNTAIHAIGLAQ 260

Query: 329 -LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387
            +    +L    +     PN  T+  ++   C+     E      +M   G +P+V+ ++
Sbjct: 261 GVDFSVRLYRQMVDAGCKPNTATFNTIVKLLCKEGRFREGYAFVQQMHKAGCEPNVLTYH 320

Query: 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447
              + L    +  + + LFE M  +G               C+     Y  LI  FG   
Sbjct: 321 CFFQYL---SRPQEVLVLFEKMLERG---------------CRPRMDTYVMLIKRFGRWG 362

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
            +  V+ + K MEE+G  PD   YN LI  +  + M D A +  +EM+  G  P
Sbjct: 363 FLRPVFFVWKTMEEQGLSPDAFAYNTLIDALLEKGMVDLARKYDEEMLAKGLSP 416



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 5/175 (2%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
            YN+ +  +G A+  +  V +  +M + G   +  TF   +         ++  A  + M
Sbjct: 248 AYNTAIHAIGLAQGVDFSVRLYRQMVDAGCKPNTATFNTIVKLLCKEGRFREGYAFVQQM 307

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNL 364
           +K   +  V T +C  + L R   P+E  +LF+K+  R   P + TY +L+  + R   L
Sbjct: 308 HKAGCEPNVLTYHCFFQYLSR---PQEVLVLFEKMLERGCRPRMDTYVMLIKRFGRWGFL 364

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
                VW  M ++G  PD  A+N +++ LL+ G    A K  E M AKG SP  R
Sbjct: 365 RPVFFVWKTMEEQGLSPDAFAYNTLIDALLEKGMVDLARKYDEEMLAKGLSPKPR 419



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 73/160 (45%)

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            +  L+ G+   R    +     +M+ RG   D  +Y+  +  +     P +AV+++KEM
Sbjct: 178 THNLLLRGWAKTRAWTRLRQHWFDMDNRGVAKDLHSYSIYMDALAKSGKPWKAVKVFKEM 237

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            +      I  YN  + +       +   +++ +M+  GC P+  ++  ++  L  + R 
Sbjct: 238 KQKRLPVDIVAYNTAIHAIGLAQGVDFSVRLYRQMVDAGCKPNTATFNTIVKLLCKEGRF 297

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
            E Y ++++M + G +  VL Y+ F   LSR     VL E
Sbjct: 298 REGYAFVQQMHKAGCEPNVLTYHCFFQYLSRPQEVLVLFE 337



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%)

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           D  +++ LI  +   +  DEA  +        F P   T+N++++ + +T  +   R+ W
Sbjct: 140 DEASFHLLIDALCDHRRVDEAHHLCFGKAPPPFPPGTKTHNLLLRGWAKTRAWTRLRQHW 199

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +M  RG   D +SY++ +  L    +  +A K  +EM +K +   ++ YN
Sbjct: 200 FDMDNRGVAKDLHSYSIYMDALAKSGKPWKAVKVFKEMKQKRLPVDIVAYN 250


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 22/352 (6%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMN 306
           +  +++ + + + + T++S+  +M   G+  ++ T  I +N+F        A ++   + 
Sbjct: 68  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 127

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLM 365
           K   +    T   L+  L       EA  LFDK+    F PN+ TY  L+ G C+V N  
Sbjct: 128 KLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTS 187

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
            A R+   M     +PDVV +  +++ L K  + ++A  LF  M  +G SP++ +YT ++
Sbjct: 188 AAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 247

Query: 426 WKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
              C                      +  +++ ++       ++   ++++  M +RG  
Sbjct: 248 HALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 307

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD +TY  L+    +Q   DEAV+++  MVR GF P + +Y  ++  Y +    +    +
Sbjct: 308 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 367

Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
           ++EM R+   PD  +Y  L+ GL    R  +A     EM+ +G    ++ Y+
Sbjct: 368 FEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYS 419



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 157/334 (47%), Gaps = 17/334 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKKA 298
           G + +  TY S++  L    +++ + ++L +M   K L  +  F   ++A     +  +A
Sbjct: 235 GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEA 294

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             I ++M +   +  V T   L++         EA  +FD +  + F P++ +YT L+ G
Sbjct: 295 HEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLING 354

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  + +A  ++ EM  K + PD   +N ++ GL  +G+  DAI LF  M A+G  P+
Sbjct: 355 YCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPD 414

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y+I++   CK                R ++    LLK +E     PD   YN +I  
Sbjct: 415 LVTYSILLDSLCKN---------------RHLEEAMALLKAIEASNLNPDIQVYNIIIDG 459

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           M      + A  ++  +   G  P++ TYN+++    + G      K++ EM    C PD
Sbjct: 460 MCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPD 519

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
             +Y  +  G +  + +  A + LEEML +G  A
Sbjct: 520 GCTYNTIARGFLQNNETLRAIQLLEEMLARGFSA 553



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 142/334 (42%), Gaps = 25/334 (7%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE---NLGRSKLPKEAQ 334
           S+  F   + + A  K     +++   M+ +     V T+N L+    +L R        
Sbjct: 64  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVL 123

Query: 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
               KL H+  P+ TT+T L+ G C    + EA  ++++MID+GF+P+VV +  ++ GL 
Sbjct: 124 AKILKLGHQ--PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 181

Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV------------------- 435
           K+G  S AI+L   M+     P+V  YT +I   CK                        
Sbjct: 182 KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIF 241

Query: 436 -YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
            YT L+    N      V  LL +M      PD + ++ ++  +  +    EA  I   M
Sbjct: 242 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM 301

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
           ++ G +P + TY  +M  +      +   KV+D M+R+G  PD  SYT LI G     + 
Sbjct: 302 IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKI 361

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A    EEM  K        YN     L   GR
Sbjct: 362 DKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGR 395



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 144/319 (45%), Gaps = 17/319 (5%)

Query: 248 YNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMN 306
           Y S++  L + RQ     ++  +M  +G+   + T+   ++A     E K    +   M 
Sbjct: 208 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 267

Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
             K    V   + +++ L +     EA  + D +  R   P++ TYT L+ G C    + 
Sbjct: 268 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 327

Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
           EA +V++ M+ KGF PDV+++  ++ G  KI K   A+ LFE M  K   P+ ++Y  ++
Sbjct: 328 EAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLM 387

Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
           +  C                  R+     L  EM  RG  PD +TY+ L+  +   +  +
Sbjct: 388 YGLCHVG---------------RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLE 432

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA+ + K +  S   P I  YN+I+    + G  E  R ++  +  +G  P   +Y ++I
Sbjct: 433 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 492

Query: 546 GGLISQDRSGEAYKYLEEM 564
            GL  +    EA K   EM
Sbjct: 493 HGLCKRGLLNEANKLFMEM 511



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 15/203 (7%)

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440
           P +V    +L  + K+   S  + L   M + G  PNV +  I+I  FC  N        
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLN-------- 114

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
                  R+   + +L ++ + G  PD  T+  LI+ + ++    EA+ ++ +M+  GF+
Sbjct: 115 -------RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ 167

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TY  ++    + GN     ++   M +  C PD   YT +I  L    +  EA+  
Sbjct: 168 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNL 227

Query: 561 LEEMLEKGMKAPVLDYNKFAADL 583
             +M+ +G+   +  Y      L
Sbjct: 228 FSQMVGQGISPDIFTYTSLVHAL 250



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 125/322 (38%), Gaps = 60/322 (18%)

Query: 337 FDKLKHRFTP-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM------ 389
           F++L H   P ++  +  LL    ++K+      +  +M   G  P+V   NI+      
Sbjct: 53  FNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCH 112

Query: 390 ----------LEGLLKIGKRSD-------------------AIKLFEVMKAKGPSPNVRS 420
                     L  +LK+G + D                   A+ LF+ M  +G  PNV +
Sbjct: 113 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVT 172

Query: 421 YTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
           Y  +I   CK                     +  +YT +I      R++   ++L  +M 
Sbjct: 173 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV 232

Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
            +G  PD  TY +L+  +           +  +MV S   P +  ++ ++ +  + G   
Sbjct: 233 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVT 292

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              ++ D MI+RG  PD  +YT L+ G   Q    EA K  + M+ KG    V+ Y    
Sbjct: 293 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 352

Query: 581 ADLSRAGR----SYVLDELAQK 598
               +  +     Y+ +E+ +K
Sbjct: 353 NGYCKIHKIDKAMYLFEEMCRK 374



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%)

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
           PP  + +  L+  +   K     + +  +M   G  P ++T N+++ S+           
Sbjct: 62  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 121

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           V  ++++ G  PD  ++T LI GL  + + GEA    ++M+++G +  V+ Y      L 
Sbjct: 122 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 181

Query: 585 RAGRSYVLDELAQKM 599
           + G +     L + M
Sbjct: 182 KVGNTSAAIRLLRSM 196


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 183/371 (49%), Gaps = 23/371 (6%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNL--VVDVLERFRHARRPAFRFFCWAG 236
           R + RVC ++++    D  + A+    G+N S N   V ++L++ + A   A+ FF WA 
Sbjct: 3   RLVARVCGILNQHGWGDETVRAL---AGLNASLNAYQVNEILKQQKEAGV-AYNFFIWAR 58

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
            + GF H+  TY +++ ILGRA+ F+ + ++L+EM  +G   ++ T+   ++ +  A + 
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
             ++ +F +M     +    T   L++   ++     A  L+ +++H  F P+  TY+++
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSII 178

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +    +   L  A +++ EM D+G+ P +V +NI+++   K GK   A+KL+  ++  G 
Sbjct: 179 IHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGY 238

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           +P+  +Y I               ++   GN   ++    + +EME  G   D   +  +
Sbjct: 239 APDRVTYGI---------------IMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLM 283

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           + +       ++A + +  M+ SG +P +   N ++ +Y ++  Y+    V   M + G 
Sbjct: 284 VDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGL 343

Query: 535 CPDDNSYTVLI 545
            P   +YT L+
Sbjct: 344 YPTLQTYTSLL 354



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 146/310 (47%), Gaps = 23/310 (7%)

Query: 272 GEKGLLSMETFKIAMNAFAA---AKERKKAVAIFELM----NKYKFKAGVDTINCLLENL 324
           G++ + ++     ++NA+      K++K+A   +        +  FK  V T   +L  L
Sbjct: 18  GDETVRALAGLNASLNAYQVNEILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGIL 77

Query: 325 GRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           GR+K       L D++ +    PN+ TY  L+  + R  +L  + +++N M   G +PD 
Sbjct: 78  GRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDR 137

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
           V +  +++   K G    A++L+  M+  G  P+  +Y+I+I            CL    
Sbjct: 138 VTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIII-----------HCL---- 182

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G   +++  Y L  EM +RG  P  +TYN +I L       D A+++Y ++   G+ P  
Sbjct: 183 GKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDR 242

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
            TY +IM+     G+ E   +V++EM R G   D+  + +++        + +A ++   
Sbjct: 243 VTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNR 302

Query: 564 MLEKGMKAPV 573
           ML+ G++  V
Sbjct: 303 MLDSGLQPNV 312



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 21/248 (8%)

Query: 361 VKNLMEAGRVWNEMI----DKGFKPDVVAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPS 415
           +K   EAG  +N  I      GFK DV  +  +L G+L   K  D +  L + M  +G  
Sbjct: 41  LKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTIL-GILGRAKSFDVLNNLLDEMIREGCE 99

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
           PNV +Y                 LI  +G    +D    L   M+  GC PD +TY  LI
Sbjct: 100 PNVVTYNR---------------LIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLI 144

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
            L       D A+ +Y++M  +GF+P   TY++I+    + G      K++ EM  RG  
Sbjct: 145 DLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYA 204

Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
           P   +Y ++I       +   A K   ++ E G     + Y      L   G     +++
Sbjct: 205 PSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQV 264

Query: 596 AQKMRFSG 603
            ++M  +G
Sbjct: 265 FEEMERAG 272


>gi|356569552|ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 485

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 202/451 (44%), Gaps = 38/451 (8%)

Query: 178 PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGD 237
           P  I+ +C +I    +   ++E  L    I+++ + V +VL+        A +FF W+G 
Sbjct: 39  PSNIKSLCHLIATTSA--ASVEHSLQSAAISVTPHDVEEVLKLSYGFPGQAVKFFRWSGR 96

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKK 297
                H   ++N ++ ILG+ R F+ M   ++ M ++GLLS+ TF    +++ AA   ++
Sbjct: 97  HLNDNHTPYSWNLVVDILGKNRFFDAMWDAIKSMNKEGLLSLATFASVFSSYVAADRIRE 156

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           A+  FE+M+ Y     V  +N LL  +  +    +A       K    P+  TY +L+ G
Sbjct: 157 AIMAFEIMDNYCVVRDVVALNSLLSAICSNGRTLDACDYLQVAKKLVRPDTDTYAILMEG 216

Query: 358 WCRVKNLMEAGRVWNEM-IDKGFKP-DVVAHNIML-------EGLLKIGKRSDAIKLFEV 408
           W     ++ A   + EM I+ G+ P +V A++  L       +GLL      +AIK  + 
Sbjct: 217 WEGENGVVGAKETFAEMVIEIGWDPLNVPAYDSFLCTLVRGPDGLL------EAIKFVDS 270

Query: 409 MKAKGPSPNVRSY---------------------TIMIWKFCKQNAAVYTCLITGFGNRR 447
           M+ +   P VR                        +++ K  +  A +Y  +I     R 
Sbjct: 271 MRDRRCFPGVRFLKAALDECVKSHDVRTAEFFWEVLVVGKVVQPTAEMYNLMIGLCCYRG 330

Query: 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN 507
             D    +L EM  +G  PD  TYN L K +   +   EA  ++ EMV++   P     +
Sbjct: 331 DTDAARRMLDEMVYQGAFPDVETYNLLFKFLIKGRKLREASVVFAEMVKNECVPEQDNCD 390

Query: 508 MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
             +K+Y   G   M  KVW  ++       + +   L+ GL   +R  EA KY E+M+++
Sbjct: 391 AAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLVVGLRDLNRLPEAVKYAEDMIDR 450

Query: 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598
            ++      +K    L +  R +V ++L +K
Sbjct: 451 EIRLSSNTMSKLRQSLIKERREFVYEDLLRK 481


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 170/362 (46%), Gaps = 25/362 (6%)

Query: 247 TYNSMMS-ILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFE 303
            YN +MS ++GR R  + +V++ E   +  + S +  +F + +       + +KA+ + E
Sbjct: 217 AYNKLMSSLIGRGRVHD-VVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 275

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRV 361
            MN++       T N L++ L R+        +  +L+      PN+ T+T ++ G+C+ 
Sbjct: 276 RMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 335

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L +A  V+N+M+  G  P+ V +N+++ G  K+G    A+++++ M      P+V ++
Sbjct: 336 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 395

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           + +I  +C+                 ++D    +  +M +    P+  T++ +I  +  Q
Sbjct: 396 SSLIDGYCRCG---------------QLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 440

Query: 482 KMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
              DEA+ +  E+ +R    P    YN ++    + G  +    +   M  +GC PD  +
Sbjct: 441 NRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 500

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           YT+LI G   + R  EA  +  EM+E G     +  N F + L +AG     +E+   MR
Sbjct: 501 YTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP---NEVDHVMR 557

Query: 601 FS 602
            +
Sbjct: 558 LA 559



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 116/247 (46%), Gaps = 18/247 (7%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  T+ S++S   +A + E  +++  +M   G++ +  T+ + +N +    +   AV ++
Sbjct: 321 NVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVY 380

Query: 303 ELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M + +    V T + L++   R  +L    ++  D  +HR  PN+ T+++++   C+ 
Sbjct: 381 QQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 440

Query: 362 KNLMEAGRVWNEM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420
               EA  + NE+ +     P    +N +++ L K GK  +A  + + M+ KG  P+  +
Sbjct: 441 NRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 500

Query: 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480
           YTI+I  +C ++               R+        EM E GC PD +T N  I  +  
Sbjct: 501 YTILIIGYCMKS---------------RISEAIMFFHEMVEAGCSPDSITVNCFISCLLK 545

Query: 481 QKMPDEA 487
             MP+E 
Sbjct: 546 AGMPNEV 552



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 23/230 (10%)

Query: 393 LLKIGKRSDAIKLFEVMKAK-GPSPNVRSYTIMIWKF--------------------CKQ 431
           L + G+++DA++LF+ M    G SP+ R  + ++                       C+ 
Sbjct: 154 LCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRV 213

Query: 432 NAAVYTCLITGFGNRRRM-DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490
            A  Y  L++    R R+ D+V    + +++R   PD  ++N +IK +       +A+ +
Sbjct: 214 EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALEL 273

Query: 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLI 549
            + M   G  P   T+N+++    +T     G +V   + R G C P+  ++T +I G  
Sbjct: 274 VERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYC 333

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
              +  +A     +M+  G+    + YN       + G      E+ Q+M
Sbjct: 334 KAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 383


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 179/388 (46%), Gaps = 25/388 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK-GLLSMETFKI-AMNAFAAAKERKK 297
           GF H   TY S++  LG   +FE M  +L +M E  G   +E   + AM  +    + ++
Sbjct: 35  GFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQE 94

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           AV +FE M+ Y  +  V + N ++  L  S    +A  ++ +++ R  TP++ ++T+ + 
Sbjct: 95  AVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMK 154

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
            +C+      A R+ N M  +G + +VVA+  ++ G  +   +++  +LF  M A G S 
Sbjct: 155 SFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSL 214

Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
            + ++  ++   CK+                    N   Y   I G   R  +D    ++
Sbjct: 215 CLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMV 274

Query: 457 KEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515
             + E+G  PD +TYN LI  L K  K  +  V + K MV  G +P  +TYN ++  Y +
Sbjct: 275 GCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGK-MVNEGLEPDSYTYNTLIAGYCK 333

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G  ++  ++  + +  G  PD  +Y  LI GL  +  +  A     E L KG+K  V+ 
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSG 603
           YN     LS  G      +LA +M   G
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKG 421



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 18/333 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N   YN+++  L           +  EM EKGL+  ++TF I +N          A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             + ++M    +   + T N L+     + K+    ++L   L +   P++ TY  LL G
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     +    +  M++KG  P++   NI+LE L +  K  +A+ L E MK K  +P+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIK 476
             ++  +I  FCK                  +D  Y L ++MEE         TYN +I 
Sbjct: 566 AVTFGTLIDGFCKNG---------------DLDGAYTLFRKMEEAYKVSSSTPTYNIIIH 610

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               +     A ++++EMV     P  +TY +++  + +TGN  +G K   EM+  G  P
Sbjct: 611 AFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIP 670

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
              +   +I  L  +DR  EA   +  M++KG+
Sbjct: 671 SLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 154/341 (45%), Gaps = 17/341 (4%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           T+N ++ +L +    +    +L+++ ++G+L ++ T+ + +       E   AV +   +
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCL 277

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
            +   K  V T N L+  L ++   +EA++   K+ +    P+  TY  L+ G+C+   +
Sbjct: 278 IEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMV 337

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
             A R+  + +  GF PD   +  +++GL   G+ + A+ LF     KG  PNV      
Sbjct: 338 QLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV------ 391

Query: 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                     +Y  LI G  N+  +     L  EM E+G  P+  T+N L+  +      
Sbjct: 392 ---------ILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            +A  + K M+  G+ P I T+N+++  Y      E   ++ D M+  G  PD  +Y  L
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSL 502

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
           + GL    +  +  +  + M+EKG    +  +N     L R
Sbjct: 503 LNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543


>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1072

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 203/451 (45%), Gaps = 62/451 (13%)

Query: 162  NSESEITSVS----YKSTADPREIERVCKVIDELFSLDRN-MEAVLDECGINLSHNLVVD 216
            NSE  +T+      +  +++ ++++ +CK++    S D   M+  L++C +  +  LV++
Sbjct: 633  NSEQGLTNCQLAKPHPKSSNEQDLKEICKILSS--SKDWCIMQEALEKCTLQFTPGLVLE 690

Query: 217  VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG- 275
            +L         A +FF W G + G+ H   TYN  M I GR + F+ M S+  EM  KG 
Sbjct: 691  ILHNCSMHGNAALKFFSWLGVQTGYCHTKETYNMAMKISGREKDFKHMRSLFYEMRRKGC 750

Query: 276  LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335
            L++ +T+ I +  +                                   GR+ L + +  
Sbjct: 751  LITPDTWAIMIMQY-----------------------------------GRTGLTEISLK 775

Query: 336  LFDKLKHR-FTPNLTTYTVLLGGWC--RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392
             F ++K   + PN +TY  LL   C  + + + EA ++++EMI   + PD       L  
Sbjct: 776  TFTEMKDNGYIPNDSTYKYLLISLCGKKGRKVDEAIKIFHEMIRTRYIPDREVVGTYLSC 835

Query: 393  LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
            L + G+ S+A K  + +   G +  + SY++ I   C+                 R++  
Sbjct: 836  LCEAGRLSEARKSTDSLCRIGYTIPL-SYSLYIRALCRSG---------------RLEEA 879

Query: 453  YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
              LL E+       D  TY  L+  +  +   +EA+   + M  +G  PT+H Y  ++  
Sbjct: 880  LSLLDEVGTERSTLDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVH 939

Query: 513  YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
            +F+    E   +++++M + GC P   +Y+ LI G ++ +R+ +A+  L  +  KG K  
Sbjct: 940  FFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPD 999

Query: 573  VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
               Y+ F + L +AG+S    +L  +M   G
Sbjct: 1000 FKTYSMFISCLCKAGKSEEALQLLSRMLEDG 1030



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 192/429 (44%), Gaps = 22/429 (5%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           REI  + +  ++L +    ME  L+  G      +V  VL+R       AFRFF W   +
Sbjct: 148 REITGIVRAENDLVA----MEERLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKMR 203

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
            GF H ++TY +M+ I G A++F+ +  ++EEM +      ++T+ I ++ F  AK   K
Sbjct: 204 DGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIGK 263

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLG 356
           A+  FE M     +        ++ +L  +   + A   + ++  +    +L+ Y +LL 
Sbjct: 264 ALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQKDMRLDLSLYKILLI 323

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
              +  ++     V N+M      P+   +  +L+     GK  +A++L   +K K    
Sbjct: 324 SMAKSGDVGAVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREALELIRDLKNKD--- 380

Query: 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
                 I+I      +      L+ G     R+    ++++ M++R    D   Y  +I 
Sbjct: 381 ------ILI------DYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLI-DAKIYGIIIN 427

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
               +K   +A+ +++ M  SG +P   TY  +M+  F    Y+ G ++++EM+ RG   
Sbjct: 428 GYLRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRV 487

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           D  +   ++   + Q+   EA++    M +KG       Y+ F  +L R  R+  + ++ 
Sbjct: 488 DSVATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFIKELCRVSRTDEILKVL 547

Query: 597 QKMRFSGKF 605
            KM+ S  F
Sbjct: 548 YKMQASKIF 556


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 174/389 (44%), Gaps = 37/389 (9%)

Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSIL------GRARQFETMVSMLEEMGEKGLLSM 279
           R +F F+C    KP      +++NS+++++       RA +F   V   ++M    L ++
Sbjct: 132 RMSFEFYC----KP----TVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNI--LPNV 181

Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
            +F + + +         A+ +F  M   K      T   L++ L +     EA  L D+
Sbjct: 182 LSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDE 241

Query: 340 LK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
           ++     P+  T+ VL+ G C+  +     ++ + M  KG  P+ V +N ++ GL   GK
Sbjct: 242 MQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 301

Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTC 438
              A+ L + M +    PN  +Y  +I    KQ                    N  VY+ 
Sbjct: 302 LDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSV 361

Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
           L++G     + +    L KE  ++GC  + + Y+AL+  +   + PDEA++I  EM   G
Sbjct: 362 LVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKG 421

Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
             P   T++ +MK +F+ GN     +VW +M +  C  ++  Y+VLI GL    +  EA 
Sbjct: 422 CAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAM 481

Query: 559 KYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
               +ML  G +  V+ Y+     L  AG
Sbjct: 482 MVWAKMLATGCRPDVVAYSSMIQGLCDAG 510



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 19/338 (5%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           ++ TY ++M  L +  + +  VS+L+EM  +G   S  TF + +N      +  +   + 
Sbjct: 215 DAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLV 274

Query: 303 ELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           + M          T N L+  L  + KL K   LL   +  +  PN  TY  ++ G  + 
Sbjct: 275 DNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQ 334

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
              ++  RV   M ++G+  +   +++++ GL K GK  +A++LF+    KG        
Sbjct: 335 GRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKG-------- 386

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
                  CK N  +Y+ L+ G    R+ D    +L EM ++GC P+  T+++L+K     
Sbjct: 387 -------CKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEV 439

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
               +A+ ++K+M +         Y++++    + G       VW +M+  GC PD  +Y
Sbjct: 440 GNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAY 499

Query: 542 TVLIGGLISQDRSGEAYKYLEEM--LEKGMKAPVLDYN 577
           + +I GL       EA K   EM  LE   +  V+ YN
Sbjct: 500 SSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYN 537



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 165/385 (42%), Gaps = 26/385 (6%)

Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAV 299
           F     T+ S++     +  F ++  +L  M  E  + S ++F +   A+  A    KA+
Sbjct: 68  FKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKAI 127

Query: 300 AIFELMN-KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL----KHRFTPNLTTYTVL 354
            +F  M+ ++  K  V + N +L  + ++     A   ++ +         PN+ ++ ++
Sbjct: 128 ELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLI 187

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +   C++  +  A  ++ EM  +   PD   +  +++GL K+ +  +A+ L + M+ +G 
Sbjct: 188 IKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGC 247

Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
            P+  ++ ++I   CK+                    N   Y  LI G   + ++D    
Sbjct: 248 FPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALS 307

Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           LL  M    C P+ +TY  +I  +  Q    +  R+   M   G+    + Y++++   F
Sbjct: 308 LLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLF 367

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  E   +++ E + +GC  +   Y+ L+ GL    +  EA K L EM +KG      
Sbjct: 368 KEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAF 427

Query: 575 DYNKFAADLSRAGRSYVLDELAQKM 599
            ++         G S+   E+ + M
Sbjct: 428 TFSSLMKGFFEVGNSHKAIEVWKDM 452



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 56/273 (20%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A R F  + DK G   N+  Y++++  L R R+ +  + +L EM +KG   +  TF   M
Sbjct: 375 AMRLFKESMDK-GCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLM 433

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP 346
             F       KA+ +++ M K         INC                           
Sbjct: 434 KGFFEVGNSHKAIEVWKDMTK---------INC-------------------------AE 459

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
           N   Y+VL+ G C+   +MEA  VW +M+  G +PDVVA++ M++GL   G   +A+KL+
Sbjct: 460 NEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLY 519

Query: 407 EVMKAKGP--SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
             M    P   P+V +Y I+    CKQ++               +    DLL  M +RGC
Sbjct: 520 NEMLCLEPDSQPDVITYNILFNALCKQSS---------------ISRAVDLLNSMLDRGC 564

Query: 465 PPDGLTYNALIKLMKIQKM--PDEAVRIYKEMV 495
            PD +T N  +++++ +K+  P +  +   E+V
Sbjct: 565 DPDLVTCNIFLRMLR-EKLDPPQDGAKFLDELV 596



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 181/452 (40%), Gaps = 57/452 (12%)

Query: 185 CKVIDELFSLDRNMEAV--LDECGIN------LSHNLVVDVLER---FRHARRPAFRFFC 233
           C ++D L  +DR  EAV  LDE  I        + N++++ L +   F    +     F 
Sbjct: 220 CTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFL 279

Query: 234 WAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAA 292
                 G   N  TYN+++  L    + +  +S+L+ M     +  E T+   +N     
Sbjct: 280 -----KGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQ 334

Query: 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFTPNLTTY 351
                   +  LM +  +       + L+  L +    +EA  LF + +      N   Y
Sbjct: 335 GRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLY 394

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
           + L+ G CR +   EA ++ +EM DKG  P+    + +++G  ++G    AI++++ M  
Sbjct: 395 SALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTK 454

Query: 412 KGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDI 451
              + N   Y+++I   CK                     +   Y+ +I G  +   ++ 
Sbjct: 455 INCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEE 514

Query: 452 VYDLLKEME--ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
              L  EM   E    PD +TYN L   +  Q     AV +   M+  G  P + T N+ 
Sbjct: 515 ALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIF 574

Query: 510 MKSYFQTGNYEM-GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++   +  +    G K  DE++ R               L+ + R+  A K +E ML+K 
Sbjct: 575 LRMLREKLDPPQDGAKFLDELVVR---------------LLKRQRNLGASKIVEVMLQKF 619

Query: 569 MKAPVLDYNKFAADLSRAGR-SYVLDELAQKM 599
           +      + +   +L +  +   V+D+   K+
Sbjct: 620 LSPKASTWARVVHELCQPKKIQAVIDKCWSKL 651



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS---GFKPTIHTYNMIMKSYFQTGNYE 520
           C P   ++N+++ ++      D A+  Y  +V +      P + ++N+I+KS  + G  +
Sbjct: 139 CKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVD 198

Query: 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580
              +++ EM  R C PD  +Y  L+ GL   DR  EA   L+EM  +G       +N   
Sbjct: 199 NAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLI 258

Query: 581 ADLSRAGRSYVLDELAQKMRFSG 603
             L + G    + +L   M   G
Sbjct: 259 NGLCKKGDFTRVTKLVDNMFLKG 281


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 158/343 (46%), Gaps = 17/343 (4%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKER 295
           ++ G + N   Y +++    +    E    +  +MGE  +++ + T+ + +N F     +
Sbjct: 178 EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLK 237

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVL 354
           K  + ++E M        V T N ++           A  LFD+++ R    N+ TY  L
Sbjct: 238 KDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTL 297

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           +GG C+ + ++EA R+   M   G  P+++++N +++G   IG    A  LF  MK+ G 
Sbjct: 298 IGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ 357

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SP++ +Y I               LI GF   +    V D+++EME RG  P  +TY  L
Sbjct: 358 SPSLATYNI---------------LIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTIL 402

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +      ++A +IY  M ++G    I+ Y +++      G+ +   K++  +     
Sbjct: 403 MDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHL 462

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            P+D  Y  +I G   +  S  A + L+EM E GM   V  YN
Sbjct: 463 KPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYN 505



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 170/420 (40%), Gaps = 32/420 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           G    S T+N+++ +L ++  FE    +  E      L + +F I +          K  
Sbjct: 112 GLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGF 171

Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGW 358
            +   M +      V     L++   ++   +  + LF K+       N  TYTVL+ G+
Sbjct: 172 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 231

Query: 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418
            ++    +   ++ +M   G  P+V  +N M+      GK ++A +LF+ M+ +G + NV
Sbjct: 232 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNV 291

Query: 419 RSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458
            +Y  +I   C++                    N   Y  LI G+ +   +D    L  +
Sbjct: 292 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 351

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M+  G  P   TYN LI      K       + +EM   G  P+  TY ++M +  ++ N
Sbjct: 352 MKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDN 411

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
            E   +++  M + G   D   Y VLI GL       EA K  + + E  +K   + YN 
Sbjct: 412 IEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNT 471

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNV---------LARWAETTKNRVYRKDRIE 629
                 + G SY    L ++M  +G   V NV         L +  + T+  V  KD IE
Sbjct: 472 MIYGYCKEGSSYRALRLLKEMGENGM--VPNVASYNSTIXILCKDEKWTEAEVLLKDMIE 529



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 17/277 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A N  TYN+++  L + R+      ++  M   GL  ++ ++   ++ + +     KA
Sbjct: 286 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 345

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
            ++F  M        + T N L+     +K       +  +++ R  +P+  TYT+L+  
Sbjct: 346 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 405

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
             R  N+ +A ++++ M   G   D+  + +++ GL  +G   +A KLF+ +      PN
Sbjct: 406 LVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPN 465

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
              Y  MI+ +CK+ ++ Y  L               LLKEM E G  P+  +YN+ I +
Sbjct: 466 DVIYNTMIYGYCKEGSS-YRAL--------------RLLKEMGENGMVPNVASYNSTIXI 510

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
           +   +   EA  + K+M+  G KP+I  +NMI K+ F
Sbjct: 511 LCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARF 547



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 129/308 (41%), Gaps = 22/308 (7%)

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDV 383
           RS+LP++A    +++  R   P   T+  LL    +     +A RV+NE   KG  K DV
Sbjct: 94  RSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE--TKGNVKLDV 151

Query: 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
            +  IM++G  ++G      ++   M+  G SPNV  YT +I   CK             
Sbjct: 152 YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKN------------ 199

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
           G+  R      L  +M E     +  TY  LI       +  + + +Y++M  +G  P +
Sbjct: 200 GDIERGK---QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 256

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
           +TYN ++      G      +++DEM  RG   +  +Y  LIGGL  + R  EA + +  
Sbjct: 257 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCR 316

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK---FEVSNVLARWAETTKN 620
           M   G+   ++ YN         G       L  +M+ SG+       N+L       KN
Sbjct: 317 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKN 376

Query: 621 RVYRKDRI 628
                D +
Sbjct: 377 SAGVTDMV 384


>gi|359487102|ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 390

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 170/372 (45%), Gaps = 44/372 (11%)

Query: 208 NLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSM 267
           +  H+ V   L  + +  + A  FF W   + GF H + TYN M+ ILG+  +F+ +  +
Sbjct: 51  SFDHSTVRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVL 110

Query: 268 LEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           ++ M    +   +  TF+     +AAA        + E + +  FK G            
Sbjct: 111 IQRMKADPVAYPNHVTFRFVFKRYAAAH-------LVEEILRGWFKMG------------ 151

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
                K+ +  ++++  R    +L +Y++ +   C+      A +++ EM  KG + DVV
Sbjct: 152 ---WWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVV 208

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
           A+N ++  +        +I++F  MK  G  PNV +Y  +I   C+              
Sbjct: 209 AYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENG------------ 256

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              R+   Y +  +M E+G  P+ +TY+     ++    P + +R +  M+ SG +P + 
Sbjct: 257 ---RIREAYGVFDQMREKGYAPNVITYHCFFGCIE---KPKQILRTFDRMINSGVRPRMD 310

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TY M+MK + + G       VW +M  +GC PD  +Y  LI  L+ +     A KY EEM
Sbjct: 311 TYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEM 370

Query: 565 LEKGMKA-PVLD 575
           L KG+ A P +D
Sbjct: 371 LAKGLSAKPRVD 382



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%)

Query: 454 DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
           +  +EM+ RG      +Y+  + +      P  AV++YKEM + G +  +  YN ++++ 
Sbjct: 158 EFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAI 217

Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV 573
             +   +   +V+ EM   GC P+  +Y  +I  L    R  EAY   ++M EKG    V
Sbjct: 218 GLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNV 277

Query: 574 LDYNKF 579
           + Y+ F
Sbjct: 278 ITYHCF 283



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 470 TYNALIKLMK-----------IQKMPDEAVRIYKEMV-RSGFK--PTIHTYNMIMKSYFQ 515
           TYN +I ++            IQ+M  + V     +  R  FK     H    I++ +F+
Sbjct: 90  TYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEILRGWFK 149

Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
            G ++  R+ W+EM RRG C    SY++ +       +   A K  +EM +KG++  V+ 
Sbjct: 150 MGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVA 209

Query: 576 YN 577
           YN
Sbjct: 210 YN 211



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 18/181 (9%)

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTYNALIKLMKIQKMPDEAVR----- 489
           Y  +I   G     D+++ L++ M+      P+ +T+  + K      + +E +R     
Sbjct: 91  YNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEILRGWFKM 150

Query: 490 --------IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
                    ++EM R G   ++++Y++ M    ++G      K++ EM ++G   D  +Y
Sbjct: 151 GWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAY 210

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR---SY-VLDELAQ 597
             +I  +   +    + +   EM E G +  V+ YN     L   GR   +Y V D++ +
Sbjct: 211 NTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMRE 270

Query: 598 K 598
           K
Sbjct: 271 K 271


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 156/332 (46%), Gaps = 17/332 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   N  TY  ++    +  + +  + ML  M EKGL+S +  F   ++ +      + A
Sbjct: 325 GIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDA 384

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + + + M   K      T N L+    R K    A  L +K+ +++ +PNL TY  L+ G
Sbjct: 385 ICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHG 444

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+ + +  A R+ + MI  GF PD       ++ L K+GK   A ++FE +K K     
Sbjct: 445 LCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHA--- 501

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                       + N  +YT LI G+    +    + L K M   GC P+ +T+N L+  
Sbjct: 502 ------------EANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDG 549

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           ++ +   ++A+ +   M +   KPT+HTY ++++   +  +++      D+MI  GC P+
Sbjct: 550 LRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPN 609

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
             +YT  I     Q R  EA + + ++ E+G+
Sbjct: 610 VVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGI 641



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 159/396 (40%), Gaps = 70/396 (17%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAM 286
           A  FF W   + GF H   +Y  ++ IL R                 G L + E  + +M
Sbjct: 86  ALNFFKWIHYQHGFIHTVHSYQPLLFILVR----------------NGFLRAAENVRNSM 129

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF-DKLKHRFT 345
               +     +A  +  L+  ++F   V + N L   L R  L  E   LF D L     
Sbjct: 130 --IKSCVSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVE 187

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PNL ++  ++   C++ N++ A   +  ++  GF  D   +  ++ G  KI +  DA K+
Sbjct: 188 PNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKV 247

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
           FE+M  +G               C +N   YT LI GF    ++D   +L  +M+E GC 
Sbjct: 248 FEIMPQEG---------------CLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCF 292

Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
           PD  TY  L+          EA++ ++EMV +G +P ++TY +++  + + G  + G ++
Sbjct: 293 PDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEM 352

Query: 526 WDEMIRRG-----------------------------------CCPDDNSYTVLIGGLIS 550
              M+ +G                                    CP+  +Y  LI G   
Sbjct: 353 LSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCR 412

Query: 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586
           +     A   L +M E  +   ++ YN     L +A
Sbjct: 413 KKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKA 448



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 171/378 (45%), Gaps = 21/378 (5%)

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAF 289
           +FC    K GF  +S TY S++    +  +      + E M ++G L  E ++   ++ F
Sbjct: 212 YFCGLM-KFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGF 270

Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNL 348
               +  +A+ +F  M +      V T   L+          EA   F+++ ++   PN+
Sbjct: 271 CEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNV 330

Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
            TYTVL+  +C+V  + E   + + M++KG    VV  N +++G  K G   DAI + + 
Sbjct: 331 YTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDS 390

Query: 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
           MK     PN R+Y  +I  FC+               ++ MD    LL +M E    P+ 
Sbjct: 391 MKLNKVCPNSRTYNELICGFCR---------------KKSMDRAMALLNKMYENKLSPNL 435

Query: 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528
           +TYN LI  +   ++ D A R++  M++ GF P   T+   +    + G  E   +V++ 
Sbjct: 436 VTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFES 495

Query: 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +  +    ++  YT LI G    ++  +A+   + ML +G     + +N     L + G+
Sbjct: 496 LKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGK 555

Query: 589 SYVLDELAQKMRFSGKFE 606
              +++    +   GKF+
Sbjct: 556 ---VEDAMSLVDVMGKFD 570



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 168/368 (45%), Gaps = 18/368 (4%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIF 302
           N   Y +++    +A +F     + + M  +G      TF + ++      + + A+++ 
Sbjct: 504 NEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLV 563

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRV 361
           ++M K+  K  V T   L+E + R      A +  D++      PN+ TYT  +  +CR 
Sbjct: 564 DVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQ 623

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L+EA  +  ++ ++G   D   +++++     IG+   A  +   M   G  P+ ++Y
Sbjct: 624 GRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTY 683

Query: 422 TIMI-----WKFCKQNAAV---YTCLITGFGNRRRM---DIVYDLLKEMEERGCPPDGLT 470
           +I++      K+ K+   +    T +     N  ++   +I+  L ++M E+GC P+  T
Sbjct: 684 SILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNT 743

Query: 471 YNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           Y+ LIK L K++ +   A R++  M  SG  P+ + +N ++ S  + G +E   ++ D M
Sbjct: 744 YSKLIKGLCKVEHL-SLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSM 802

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           +         SY +L+ GL  Q    +A +    +L  G     + +      L R G  
Sbjct: 803 MEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKG-- 860

Query: 590 YVLDELAQ 597
           YV DE +Q
Sbjct: 861 YV-DECSQ 867



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 65/136 (47%)

Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529
           +YN L  ++    + DE   ++K+M+  G +P + ++N ++ ++ + GN  + +  +  +
Sbjct: 157 SYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGL 216

Query: 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
           ++ G C D  +YT LI G       G+AYK  E M ++G     + Y          G+ 
Sbjct: 217 MKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKI 276

Query: 590 YVLDELAQKMRFSGKF 605
               EL  +M+  G F
Sbjct: 277 DEALELFFQMKEDGCF 292


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 28/374 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAV 299
           GF+ N   + +++  L    +FE+ +  L EM  + +   +     +      KE K + 
Sbjct: 483 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVG-GLCKEGKHSD 541

Query: 300 AI---FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLL 355
           A+   F L+ K  F A + T N L+  L ++   +EA  L  K+  R F  +  TY  L+
Sbjct: 542 AVELWFRLLEK-GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 600

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
            G C+   + E  ++  EM+ +G +PD   +N+++ G+ +IGK  +A+ L+   K++   
Sbjct: 601 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 660

Query: 416 PNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDL 455
           PNV +Y +MI  +CK                     N+ VY  LI  +         + L
Sbjct: 661 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 720

Query: 456 LKEMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
             +M  +G PP   TY++LI  M  I +M D    I  EM + G  P +  Y  ++  Y 
Sbjct: 721 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI-DEMRKEGLLPNVVCYTALIGGYC 779

Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           + G  +    V  EM      P+  +YTV+I G         A K L EM+ KG+    +
Sbjct: 780 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 839

Query: 575 DYNKFAADLSRAGR 588
            YN       + G+
Sbjct: 840 TYNVLTNGFCKEGK 853



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 183/474 (38%), Gaps = 96/474 (20%)

Query: 221 FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME 280
           FR+A    FRF    G  P      +T   ++S L +A + E    + E M +     + 
Sbjct: 260 FRNAIG-VFRFLANKGVFP----TVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVY 314

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL---------------- 324
            F  A+NAF    + + A+ +F  M K      V T N L+  L                
Sbjct: 315 LFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKM 374

Query: 325 -----------------GRSKLPK--EAQ-LLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
                            G  KL K  EA  +L + L+  FTPN   Y  L+ G+C++ NL
Sbjct: 375 VKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNL 434

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
            +A R+  +M+ KG  P+ V  N +++G  KIG+   A  + E M ++G S N  ++T +
Sbjct: 435 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTI 494

Query: 425 I-W----------------------------------KFCKQ------------------ 431
           I W                                    CK+                  
Sbjct: 495 IHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 554

Query: 432 --NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N      LI G      M     LLK+M ERG   D +TYN LI     +   +E  +
Sbjct: 555 GANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFK 614

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           +  EMV+ G +P   TYN+++    + G  +    +W+E   R   P+  +Y V+I G  
Sbjct: 615 LRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYC 674

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             D+  E  K   E+L + ++   + YN       R G +    +L   MR  G
Sbjct: 675 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG 728



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 158/338 (46%), Gaps = 21/338 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-LLSMETFKIAMNAFAAAKERKKA 298
           GF  N  T N+++  L +    +  V +L++M E+G +L   T+   ++      + ++ 
Sbjct: 553 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEG 612

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M K   +    T N L+  + R     EA  L+++ K R   PN+ TY V++ G
Sbjct: 613 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 672

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C+   + E  +++ E++ +  + + V +N ++    + G   +A KL + M++KG  P 
Sbjct: 673 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 732

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476
                           A Y+ LI G  N  RM+    L+ EM + G  P+ + Y ALI  
Sbjct: 733 ---------------TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGG 777

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
             K+ +M D+ V + +EM      P   TY +++  Y ++G+ +   K+  EM+ +G  P
Sbjct: 778 YCKLGQM-DKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 836

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
           D  +Y VL  G   + +  E     E+ +  G  +P+ 
Sbjct: 837 DTVTYNVLTNGFCKEGKIEEGKLLAEDGV--GFNSPLF 872



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 161/369 (43%), Gaps = 44/369 (11%)

Query: 257 RARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNK------YK 309
           R   F   + +   +  KG+  +++T    +++   A E +K+  +FE M +      Y 
Sbjct: 256 RNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYL 315

Query: 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369
           F   ++            K+    QL FD  K   +PN+ TY  L+ G C+  NL EA R
Sbjct: 316 FSTAINAF------CKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFR 369

Query: 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429
              +M+  G    ++ +++++ GL+K+ K ++A  + +    KG +PN   Y  +I  +C
Sbjct: 370 FKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYC 429

Query: 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAV 488
           K           G   R R D+V         +G  P+ +T N++I+   KI +M ++A 
Sbjct: 430 KMGN-------LGDALRIRGDMV--------SKGINPNSVTLNSIIQGFCKIGQM-EQAE 473

Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
            I +EM+  GF      +  I+        +E   +   EM+ R   P+D   T L+GGL
Sbjct: 474 CILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGL 533

Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG--------------RSYVLDE 594
             + +  +A +    +LEKG  A ++  N     L + G              R +VLD+
Sbjct: 534 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 593

Query: 595 LAQKMRFSG 603
           +      SG
Sbjct: 594 ITYNTLISG 602



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 156/367 (42%), Gaps = 19/367 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           GF  N   YN+++    +       + +  +M  KG+  +  T    +  F    + ++A
Sbjct: 413 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQA 472

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLG-RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             I E M    F         ++  L   S+     + L + L     PN    T L+GG
Sbjct: 473 ECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGG 532

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+     +A  +W  +++KGF  ++V  N ++ GL K G   +A++L + M  +G   +
Sbjct: 533 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD 592

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +Y  +I   CK+                +++  + L  EM ++G  PD  TYN LI  
Sbjct: 593 KITYNTLISGCCKEG---------------KVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 637

Query: 478 M-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           M +I K+ DEAV ++ E       P ++TY +++  Y +    E G K++ E++ +    
Sbjct: 638 MCRIGKL-DEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 696

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596
           +   Y  LI        + EA+K  ++M  KG+      Y+     +   GR      L 
Sbjct: 697 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 756

Query: 597 QKMRFSG 603
            +MR  G
Sbjct: 757 DEMRKEG 763


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 170/369 (46%), Gaps = 22/369 (5%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G+        ++LE  G + +  +  F   + A+  +   + A+  + L  ++KF+   D
Sbjct: 44  GKGSASAVFAAILETKGTQ-ISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFD 102

Query: 316 TINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T   ++E+L + K  K     +++ L++ +  +L  + +L+  + +   +  A  V++ +
Sbjct: 103 TXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAI 162

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--- 431
              G +P VV+ N ++ G +K+G   +  +L   M+A G  P+V +Y+++I   CK+   
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKM 222

Query: 432 -----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
                            N   +T LI G     R+D+  ++ K+M  +   PD +TYN L
Sbjct: 223 EDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           I  +  +    +A  +  EM   G KP   TY  ++    + G+ E   +    MI+   
Sbjct: 283 IYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENI 342

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
             DD +YT LI GL  + RS +A K L EML  G+K  +  Y     +  + G  +   +
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 595 LAQKMRFSG 603
           L ++M+  G
Sbjct: 403 LLKEMQRDG 411



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 144/304 (47%), Gaps = 22/304 (7%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M++F    E + A ++F+ + K+  +  
Sbjct: 111 LMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+    +     E   L + ++     P++ TY+VL+ G C+   + +A  +++
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFD 230

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM++ G  P+ V    +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK+ 
Sbjct: 231 EMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++  K M +     D + Y 
Sbjct: 291 DLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYT 350

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 533 GCCP 536
           G  P
Sbjct: 411 GYVP 414



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +    ++A  LFD+ L +   PN  T+T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I   CK+                    +   YT LI+G     R      +L+
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           EM   G  P+  TY  +I     +       ++ KEM R G+ P++ T
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 176/386 (45%), Gaps = 23/386 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY+S+++ L + +  +  + +L  M + G++ +  T+   ++ + ++++ K+A+   + M
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +  V T N L++ L ++    EA+ +FD +  R   P++ TY  LL G+     L
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +E   + + M+  G  PD    NI++    K  K  +A+ +F  M+  G +PNV +Y  +
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     N  VYT LI       + D   +L+ EM +RG 
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             + + +N++I     +    E+ +++  MVR G KP + TY+ ++  Y   G  +   K
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATK 532

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +   M   G  PD  +Y  LI G     R  +A    +EM+  G+   ++ YN     L 
Sbjct: 533 LLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 592

Query: 585 RAGRSYVLDELAQKMRFSG-KFEVSN 609
              R+    EL   +  SG + E+S 
Sbjct: 593 HTRRTAAAKELYVGITKSGTQLELST 618



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 169/373 (45%), Gaps = 24/373 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TYNS+M  L +  +      + + M ++GL   + T+   +  +A      + 
Sbjct: 296 GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM 355

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
            A+ +LM +          N L+    + +   EA L+F K++ H   PN+ TY  ++G 
Sbjct: 356 HALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGI 415

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++ +A   + +MID+G  P+++ +  ++  L    K   A +L   M  +G   N
Sbjct: 416 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLN 475

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
              +  +I   CK+                    N   Y+ LI G+    +MD    LL 
Sbjct: 476 TIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            M   G  PD +TYN LI    ++ +M D+A+ ++KEMV SG  P I TYN+I++  F T
Sbjct: 536 SMFSVGMKPDCVTYNTLINGYCRVSRM-DDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                 ++++  + + G   + ++Y +++ GL   + + EA +  + +    ++     +
Sbjct: 595 RRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 577 NKFAADLSRAGRS 589
           N     L + GR+
Sbjct: 655 NIMIGALLKVGRN 667



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 152/329 (46%), Gaps = 16/329 (4%)

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
            E +  M ++ G      + ++   +N F    +  KA + +  M   +    V T + +
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 321 LENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +  L + + + K  ++L   +K+   PN  TY  +L G+C  +   EA     +M   G 
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGV 297

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +PDVV +N +++ L K G+ ++A K+F+ M  +G  P++               A Y  L
Sbjct: 298 EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDI---------------ATYCTL 342

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           + G+  +  +  ++ LL  M   G  PD   +N LI     Q+  DEA+ ++ +M + G 
Sbjct: 343 LQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY  ++    ++G+ +     +++MI  G  P+   YT LI  L   D+  +A +
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEE 462

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + EML++G+    + +N       + GR
Sbjct: 463 LILEMLDRGICLNTIFFNSIIHSHCKEGR 491



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 23/348 (6%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY  ++    RA + +   + L  + +KG  +   TF   +    A K    A+ I  L 
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIV-LR 147

Query: 306 NKYKFKAGVDTINC--LLENLGRSKLPKEA----QLLFDKLKHRFTPNLTTYTVLLGGWC 359
              +     D  +C  LL+ L      +EA     ++ D       P++ +YT ++ G+ 
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
           +  +  +A   ++EM+D+   PDVV ++ ++  L K      A+++   M   G  PN  
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
           +Y  ++  +C            GF            LK+M   G  PD +TYN+L+  + 
Sbjct: 268 TYNSILHGYCSSEQPKEA---IGF------------LKKMRSDGVEPDVVTYNSLMDYLC 312

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                 EA +I+  M + G +P I TY  +++ Y   G       + D M+R G  PD +
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHH 372

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            + +LI     Q++  EA     +M + G+   V+ Y      L ++G
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSG 420



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 166/359 (46%), Gaps = 29/359 (8%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY +++ IL ++   +  +   E+M ++GL  ++  +   +++     +  KA
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKA 460

Query: 299 VA-IFELMNKYKFKAGVDTI--NCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVL 354
              I E++++      ++TI  N ++ +  +     E++ LFD  ++    PN+ TY+ L
Sbjct: 461 EELILEMLDR---GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C    + EA ++ + M   G KPD V +N ++ G  ++ +  DA+ LF+ M + G 
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SPN+ +Y I++                G  + RR     +L   + + G   +  TYN +
Sbjct: 578 SPNIITYNIILQ---------------GLFHTRRTAAAKELYVGITKSGTQLELSTYNII 622

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +    + DEA+R+++ +  +  +    T+N+++ +  + G  +  + ++  +   G 
Sbjct: 623 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 682

Query: 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA------ADLSRAG 587
            PD  +Y+++   LI Q    E       M E G  A     N          D++RAG
Sbjct: 683 VPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAG 741



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 152/369 (41%), Gaps = 70/369 (18%)

Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH----RFTPNLTTYTVLLG 356
           +FE + +    A +  +N  L ++ R   P  A   ++++      + TP + TY +L+G
Sbjct: 37  VFEELLRRGRGASIYGLNRALADVARHS-PAAAVSRYNRMARAGAGKVTPTVHTYGILIG 95

Query: 357 GWCRVKNLMEAGRVWNEMIDKGFK------------------------------------ 380
             CR   L         ++ KGF+                                    
Sbjct: 96  CCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCM 155

Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVM---KAKGPSPNVRSYTIMIWKFCKQ------ 431
           PDV +  I+L+GL    +  +A++L  +M   +  G +P+V SYT +I  F K+      
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215

Query: 432 --------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
                         +   Y+ +I      + MD   ++L  M + G  P+ +TYN+++  
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
               + P EA+   K+M   G +P + TYN +M    + G     RK++D M +RG  PD
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE--- 594
             +Y  L+ G  ++    E +  L+ M+  G+     D++ F   +    +   +DE   
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIHP---DHHVFNILICAYAKQEKVDEAML 392

Query: 595 LAQKMRFSG 603
           +  KMR  G
Sbjct: 393 VFSKMRQHG 401



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 151/331 (45%), Gaps = 19/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++  L    +++    ++ EM ++G+ L+   F   +++        ++
Sbjct: 436 GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIES 495

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F+LM +   K  V T + L++    + K+ +  +LL         P+  TY  L+ G
Sbjct: 496 EKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLING 555

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CRV  + +A  ++ EM+  G  P+++ +NI+L+GL    + + A +L+  +   G    
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE 615

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           + +Y I++   CK N       +  F N    D+      ++E R       T+N +I  
Sbjct: 616 LSTYNIILHGLCKNNLTDEA--LRMFQNLCLTDL------QLETR-------TFNIMIGA 660

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L+K+ +  DEA  ++  +  +G  P + TY+++ ++  + G  E    ++  M   GC  
Sbjct: 661 LLKVGR-NDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTA 719

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           +      ++  L+ +     A  YL  + EK
Sbjct: 720 NSRMLNSIVRKLLQRGDITRAGTYLSMIDEK 750


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 170/385 (44%), Gaps = 52/385 (13%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY +++  L R    + M  +L+EM E+ L+  + T+   +     A     A  + 
Sbjct: 292 NVYTYTALIKGLCRKNVHKAM-GLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLL 350

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            LM +        T  C ++ L +S   +EA+ LFD L     + N+  Y+VL+ G+C+V
Sbjct: 351 SLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKV 410

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             + EAG ++ +M+ K   P+    N ++ GL   G   +A+ LF+ M   G  P V ++
Sbjct: 411 GKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTF 470

Query: 422 TIMIWKFCKQN--------------------AAVYTCLITGFGNRRRMDIVYDLLKEMEE 461
            I+I +  KQ                     A  Y   I  + +  ++    D++ +M+E
Sbjct: 471 NILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKE 530

Query: 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF------- 514
            G PPD  TY +LIK      +   A  + K M  +  +P+ HT+  ++K  F       
Sbjct: 531 EGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVE 590

Query: 515 ---QTG-------------------NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552
              +TG                    +++  ++++EM + GC PD   Y  LI G+   +
Sbjct: 591 KSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVE 650

Query: 553 RSGEAYKYLEEMLEKGMKAPVLDYN 577
             G A K L++M ++G+    + +N
Sbjct: 651 NLGIALKLLDQMQKEGISPSEMVFN 675



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 187/432 (43%), Gaps = 46/432 (10%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF----ETMVSMLE-------------- 269
           A +F  W    P F HN  +Y S+++++   +      + +VSM++              
Sbjct: 84  ALQFSYWISQTPNFKHNVDSYASLLTLIDHHKIVSDVPKIIVSMIKCCYSAPDALFVSDI 143

Query: 270 --EMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
             +M +  +  LS++ +   +   A      +   ++  M +      + T N ++    
Sbjct: 144 CRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYC 203

Query: 326 RSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           +    KEA Q +   ++   +P+  T T  + G+CR K++  A RV+ EM ++    + V
Sbjct: 204 KMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEV 259

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA----------- 433
           ++N ++ GL + G+  +A+ LF  MK     PNV +YT +I   C++N            
Sbjct: 260 SYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLDEML 319

Query: 434 --------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
                     Y  LI G      +D  Y LL  M+ERG  PD  TY   I  +      +
Sbjct: 320 ERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVE 379

Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
           EA R++  +   G    +  Y++++  Y + G  +    ++++M+ + C P+  ++  LI
Sbjct: 380 EARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALI 439

Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
            GL S     EA    ++M++ G+K  V  +N     + + G      +  QKM  SG+ 
Sbjct: 440 HGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEK 499

Query: 606 EVSNVLARWAET 617
            V+     + E 
Sbjct: 500 PVARTYNAFIEV 511



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%)

Query: 210 SHNLVVDVLERFRHARRPAFRFFC---WAGDKPGFAHNSRTYNSMMSILG--RARQFETM 264
           + NL+++V  +    +  A +F C    AG  P +      + S   ILG  R++  ++ 
Sbjct: 194 TFNLMINVYCKMGFVKE-AKQFMCKMIQAGLSPDY------FTSTSFILGYCRSKDVDSA 246

Query: 265 VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324
             + EEM  +  +S   +   ++    A    +AV++F  M        V T   L++ L
Sbjct: 247 FRVFEEMPNRNEVS---YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303

Query: 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            R  + K   LL + L+    P+L TY  L+ G CR  +L  A R+ + M ++G  PD  
Sbjct: 304 CRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQR 363

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
            +   ++ L K  +  +A +LF+ +  +G S NV  Y+++I  +CK              
Sbjct: 364 TYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVG------------ 411

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
              ++D    L ++M  + C P+  T+NALI  +       EA+ ++ +MV+ G KPT++
Sbjct: 412 ---KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVY 468

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           T+N+++    + G+++   K   +M+  G  P   +Y   I    S  +  EA   + +M
Sbjct: 469 TFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQM 528

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
            E+G+      Y        + G +Y   ++ + M
Sbjct: 529 KEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM 563



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/479 (19%), Positives = 186/479 (38%), Gaps = 102/479 (21%)

Query: 179 REIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDK 238
           + + +   ++DE+  L+RN+   L      +++N ++    R  H    A+R      ++
Sbjct: 306 KNVHKAMGLLDEM--LERNLVPDL------ITYNSLIAGQCRAGHLDS-AYRLLSLMKER 356

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKK 297
            G   + RTY   +  L ++ + E    + + + E+G+  ++  + + ++ +    +  +
Sbjct: 357 -GLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDE 415

Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLG 356
           A  +FE M          T N L+  L  +   KEA  LFD++ K    P + T+ +L+G
Sbjct: 416 AGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIG 475

Query: 357 -----------------------------------GWCRVKNLMEAGRVWNEMIDKGFKP 381
                                               +C    + EA  +  +M ++G  P
Sbjct: 476 RMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPP 535

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI---------------- 425
           D   +  +++   K+G    A  + + M      P+  ++  +I                
Sbjct: 536 DDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGET 595

Query: 426 ----------------WKF-----------------CKQNAAVYTCLITGFGNRRRMDIV 452
                           WK                  C  ++  Y  LI+G      + I 
Sbjct: 596 GVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIA 655

Query: 453 YDLLKEMEERGCPPDGLTYNALIKLM-KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
             LL +M++ G  P  + +NA+I    K+QK   EA  I ++M+ SG  P +     ++ 
Sbjct: 656 LKLLDQMQKEGISPSEMVFNAVISCCCKLQKY-GEAANIVEDMICSGHSPQLEHCKTLIC 714

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDN--SYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
             ++ G  E G  V+ ++  RGC  +D+  ++ +LI G++ Q    E  +  EEM + G
Sbjct: 715 GLYEEGETERGNSVFKKL--RGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 134/311 (43%), Gaps = 56/311 (18%)

Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL------------------ 276
           +G+KP     +RTYN+ + +   A + +    M+ +M E+G+                  
Sbjct: 496 SGEKP----VARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLG 551

Query: 277 LSMETFKIAMNAFAAAKERKKAV---AIFELMNKYKF-----KAGVDTINCLLENLGRSK 328
           L+   F +  + F A  E         I +L +K        + GV++++   +  G S 
Sbjct: 552 LTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPG-SN 610

Query: 329 LPKEAQL-----LFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382
           + K  +      LF+++ KH  TP+   Y  L+ G C+V+NL  A ++ ++M  +G  P 
Sbjct: 611 MWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPS 670

Query: 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
            +  N ++    K+ K  +A  + E M   G SP +     +I            C +  
Sbjct: 671 EMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLI------------CGLYE 718

Query: 443 FGNRRRMDIVYDLLKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   R + V+  L     RGC    D + +  LI  M  Q + +E  ++++EM ++G  
Sbjct: 719 EGETERGNSVFKKL-----RGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCN 773

Query: 501 PTIHTYNMIMK 511
            +  TY+++ +
Sbjct: 774 FSPRTYSILTQ 784



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 14/195 (7%)

Query: 236 GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKE 294
           GD PG            S + +  +F+ ++ + EEM + G     + ++  ++     + 
Sbjct: 604 GDVPG------------SNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVEN 651

Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTV 353
              A+ + + M K          N ++    +  K  + A ++ D +    +P L     
Sbjct: 652 LGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKT 711

Query: 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413
           L+ G            V+ ++   G+  D +A  I+++G+LK G   +  +LFE M+  G
Sbjct: 712 LICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771

Query: 414 PSPNVRSYTIMIWKF 428
            + + R+Y+I+  K 
Sbjct: 772 CNFSPRTYSILTQKL 786


>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
 gi|194705268|gb|ACF86718.1| unknown [Zea mays]
 gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
          Length = 504

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 193/431 (44%), Gaps = 33/431 (7%)

Query: 150 DNQDSDGECDGNNSESEITSVSYKSTADPR-EIERVCKVI---DELFSLDRNMEAVLDEC 205
           +N D DGE      +S       +   D R E +R+ +++      FS    ++ +  + 
Sbjct: 80  ENDDDDGETFSPGQDSR-----RRFFGDVRLEADRIFRILLQDGPGFSTRHALDEMRPKV 134

Query: 206 GINLSHNLV------VDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR 259
            I L   ++      VD + R R+ +  A++FF WAG + G+ H++  YN +M +     
Sbjct: 135 SIELVREVLFRIVVSVDSVNRERYPKL-AYKFFIWAGQQEGYQHSTSMYNLVMKVFAECG 193

Query: 260 QFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN 318
           + + M  + EEM  KGL +S  TF + + A      R++ V  F   + + ++   +  N
Sbjct: 194 EVKAMWRLFEEMAAKGLPVSSRTFHLLICASVKVGLRRRLVERFIRSSTFNYRPFRNAFN 253

Query: 319 CLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
            +L  L   +     + + +K+    ++P++ TY V+L     +  L +  ++ +EM   
Sbjct: 254 AILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQFHQLLDEMGKN 313

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G  PD+  +N++L  L K  K   A+ L   M   G               C+ N   +T
Sbjct: 314 GLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVG---------------CRPNVLHFT 358

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI G G    ++       EM ++GC PD + Y  +I         +EA R + +M+  
Sbjct: 359 NLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMR 418

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G  P ++TYN +++     G ++    +  +M   GC P+ + Y+ L+  L +  +  +A
Sbjct: 419 GQLPNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQA 478

Query: 558 YKYLEEMLEKG 568
              ++ M +KG
Sbjct: 479 NNVIKYMTDKG 489


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 29/385 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G   +  TYNS++  L +AR  +   + L +M  K +L    T+   +  +++  + K+A
Sbjct: 252 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 311

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLLGG 357
           V +F+ M ++     V T++ L+ +L +    KEA+ +FD +  +   P++ +Y ++L G
Sbjct: 312 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 371

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     L++   +++ M+  G  PD    N++++     G    A+ +F  M+  G  P+
Sbjct: 372 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 431

Query: 418 VRSYTIMIWKFCK----------------QNAA----VYTCLITGFGNRRRMDIVYDLLK 457
           V +Y  +I   C+                Q  A     Y CLI GF     +    +L+ 
Sbjct: 432 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 491

Query: 458 EMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           E+   G   D + ++++I  L K+ ++ D A  I+   V  G  P    YNM+M  Y   
Sbjct: 492 EIMNNGMHLDIVFFSSIINNLCKLGRVMD-AQNIFDLTVNVGLHPDAVVYNMLMDGYCLV 550

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E   +V+D M+  G  P+   Y  L+ G     R  E      EML++G+K   + Y
Sbjct: 551 GKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILY 610

Query: 577 NKFAADLSRAGRSYVLDELAQKMRF 601
           +     L  AGR+     +  KM+F
Sbjct: 611 SIIIDGLFEAGRT-----VPAKMKF 630



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 16/334 (4%)

Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
           G++ Q + ++ M+ E G     ++  +   ++ F    +  KA  +F+ M +      + 
Sbjct: 199 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 258

Query: 316 TINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
           T N ++  L +++ + K    L   +  R  PN  TY  L+ G+       EA RV+ EM
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434
                 PDVV  ++++  L K GK  +A  +F+ M  KG +P+V SY IM+  +     A
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY-----A 373

Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494
              CL+           + DL   M   G  PD  T+N LIK      M D+A+ I+ EM
Sbjct: 374 TKGCLVD----------MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 423

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
              G KP + TY  ++ +  + G  +   + +++MI +G  PD  +Y  LI G  +    
Sbjct: 424 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 483

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            +A + + E++  GM   ++ ++    +L + GR
Sbjct: 484 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 120/266 (45%), Gaps = 19/266 (7%)

Query: 316 TINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW-NE 373
           T   L++   R+  P+ A   F +L +     N+     LL G+C  K   EA  +  + 
Sbjct: 116 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHR 175

Query: 374 MIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP--SPNVRSYTIMIWKFCKQ 431
             + G  PDV +++I+L+ L   GK   A  L  +M   G   SPNV +Y  +I  F K+
Sbjct: 176 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKE 235

Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491
                 C               DL KEM +RG PPD +TYN+++  +   +  D+A    
Sbjct: 236 GDVNKAC---------------DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551
           ++MV     P   TYN ++  Y  TG ++   +V+ EM R    PD  + ++L+G L   
Sbjct: 281 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 340

Query: 552 DRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +  EA    + M  KG    V  YN
Sbjct: 341 GKIKEARDVFDTMAMKGQNPDVFSYN 366



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 149/351 (42%), Gaps = 22/351 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A +  T+N ++         +  + +  EM + G+   + T++  + A     +   A
Sbjct: 392 GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 451

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           +  F  M            NCL++       L K  +L+ + + +    ++  ++ ++  
Sbjct: 452 MEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 511

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++  +M+A  +++  ++ G  PD V +N++++G   +GK   A+++F+ M + G  PN
Sbjct: 512 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 571

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  ++  +CK                     +  +Y+ +I G     R         
Sbjct: 572 VVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFH 631

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM E G   D  TYN +++ +   +  DEA+ ++KE+     K  I T N ++   FQT 
Sbjct: 632 EMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTR 691

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
             E  + ++  + R    P   +Y+++I  LI +    EA      M   G
Sbjct: 692 RVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 742



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 144/359 (40%), Gaps = 65/359 (18%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+ I M+    A   + A+A F  + +   +  +   N LLE    +K   EA    D L
Sbjct: 116 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA---LDIL 172

Query: 341 KHR-----FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF--KPDVVAHNIMLEGL 393
            HR       P++ +Y++LL   C      +A  +   M + G    P+VVA+N +++G 
Sbjct: 173 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGF 232

Query: 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------------------- 434
            K G  + A  LF+ M  +G  P++ +Y  ++   CK  A                    
Sbjct: 233 FKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNN 292

Query: 435 -VYTCLITG-------------FGNRRRMDIVYDL---------------LKE------- 458
             Y  LI G             F   RR  I+ D+               +KE       
Sbjct: 293 WTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDT 352

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           M  +G  PD  +YN ++     +    +   ++  M+  G  P  +T+N+++K+Y   G 
Sbjct: 353 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 412

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
            +    +++EM   G  PD  +Y  +I  L    +  +A +   +M+++G+      YN
Sbjct: 413 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 471



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 136/330 (41%), Gaps = 17/330 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A +   YN ++              ++ E+   G+ L +  F   +N          A
Sbjct: 462 GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA 521

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
             IF+L             N L++        ++A  +FD +      PN+  Y  L+ G
Sbjct: 522 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 581

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +C++  + E   ++ EM+ +G KP  + ++I+++GL + G+   A   F  M   G + +
Sbjct: 582 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD 641

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
           + +Y I               ++ G    R  D    L KE+       + +T N +I  
Sbjct: 642 ICTYNI---------------VLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDG 686

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           M   +  +EA  ++  + RS   P++ TY++++ +  + G  E    ++  M   GC P+
Sbjct: 687 MFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 746

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
                 ++  L+ ++    A  YL ++ E+
Sbjct: 747 SRLLNHVVRELLKKNEIVRAGAYLSKIDER 776



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 28/299 (9%)

Query: 330 PKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
           P  A  LF++   R       +P   TY +L+    R      A   + +++  G + ++
Sbjct: 90  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 149

Query: 384 VAHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442
           +  N +LEG  +  +  +A+  L       G  P+V SY+I++   C Q           
Sbjct: 150 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ----------- 198

Query: 443 FGNRRRMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
            G   + D   DLL+ M E G  C P+ + YN +I     +   ++A  ++KEMV+ G  
Sbjct: 199 -GKSGQAD---DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP 254

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P + TYN ++ +  +    +       +M+ +   P++ +Y  LI G  S  +  EA + 
Sbjct: 255 PDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 314

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRFSGKFEVSNVLARWA 615
            +EM    +   V+  +     L + G+      V D +A K +    F  + +L  +A
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 373


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 176/386 (45%), Gaps = 23/386 (5%)

Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELM 305
           TY+S+++ L + +  +  + +L  M + G++ +  T+   ++ + ++++ K+A+   + M
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNL 364
                +  V T N L++ L ++    EA+ +FD +  R   P++ TY  LL G+     L
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
           +E   + + M+  G  PD    NI++    K  K  +A+ +F  M+  G +PNV +Y  +
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412

Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
           I   CK                     N  VYT LI       + D   +L+ EM +RG 
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
             + + +N++I     +    E+ +++  MVR G KP + TY+ ++  Y   G  +   K
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATK 532

Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
           +   M   G  PD  +Y  LI G     R  +A    +EM+  G+   ++ YN     L 
Sbjct: 533 LLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 592

Query: 585 RAGRSYVLDELAQKMRFSG-KFEVSN 609
              R+    EL   +  SG + E+S 
Sbjct: 593 HTRRTAAAKELYVGITKSGTQLELST 618



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 169/373 (45%), Gaps = 24/373 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   +  TYNS+M  L +  +      + + M ++GL   + T+   +  +A      + 
Sbjct: 296 GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM 355

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK-HRFTPNLTTYTVLLGG 357
            A+ +LM +          N L+    + +   EA L+F K++ H   PN+ TY  ++G 
Sbjct: 356 HALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGI 415

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  ++ +A   + +MID+G  P+++ +  ++  L    K   A +L   M  +G   N
Sbjct: 416 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLN 475

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
              +  +I   CK+                    N   Y+ LI G+    +MD    LL 
Sbjct: 476 TIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            M   G  PD +TYN LI    ++ +M D+A+ ++KEMV SG  P I TYN+I++  F T
Sbjct: 536 SMFSVGMKPDCVTYNTLINGYCRVSRM-DDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
                 ++++  + + G   + ++Y +++ GL   + + EA +  + +    ++     +
Sbjct: 595 RRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 577 NKFAADLSRAGRS 589
           N     L + GR+
Sbjct: 655 NIMIGALLKVGRN 667



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 152/329 (46%), Gaps = 16/329 (4%)

Query: 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320
            E +  M ++ G      + ++   +N F    +  KA + +  M   +    V T + +
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 321 LENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
           +  L + + + K  ++L   +K+   PN  TY  +L G+C  +   EA     +M   G 
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGV 297

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439
           +PDVV +N +++ L K G+ ++A K+F+ M  +G  P++               A Y  L
Sbjct: 298 EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDI---------------ATYCTL 342

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           + G+  +  +  ++ LL  M   G  PD   +N LI     Q+  DEA+ ++ +M + G 
Sbjct: 343 LQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
            P + TY  ++    ++G+ +     +++MI  G  P+   YT LI  L   D+  +A +
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEE 462

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
            + EML++G+    + +N       + GR
Sbjct: 463 LILEMLDRGICLNTIFFNSIIHSHCKEGR 491



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 138/338 (40%), Gaps = 31/338 (9%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
           ++ T+ I +     A       A    + K  F+    T   LL+ L   K   +A    
Sbjct: 86  TVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDA---M 142

Query: 338 DKLKHRFT-----PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDVVAHNIM 389
           D +  R T     P++ + T+LL G C      EA  + + M D    G  PDVV++  +
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK------------------- 430
           + G  K G    A   +  M  +  SP+V +Y+ +I   CK                   
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGV 262

Query: 431 -QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489
             N   Y  ++ G+ +  +       LK+M   G  PD +TYN+L+  +       EA +
Sbjct: 263 MPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARK 322

Query: 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549
           I+  M + G +P I TY  +++ Y   G       + D M+R G  PD + + +LI    
Sbjct: 323 IFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYA 382

Query: 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
            Q++  EA     +M + G+   V+ Y      L ++G
Sbjct: 383 KQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSG 420



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 133/323 (41%), Gaps = 65/323 (20%)

Query: 343 RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK---------------------- 380
           + TP + TY +L+G  CR   L         ++ KGF+                      
Sbjct: 82  KVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDA 141

Query: 381 --------------PDVVAHNIMLEGLLKIGKRSDAIKLFEVM---KAKGPSPNVRSYTI 423
                         PDV +  I+L+GL    +  +A++L  +M   +  G +P+V SYT 
Sbjct: 142 MDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTT 201

Query: 424 MIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463
           +I  F K+                    +   Y+ +I      + MD   ++L  M + G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523
             P+ +TYN+++      + P EA+   K+M   G +P + TYN +M    + G     R
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
           K++D M +RG  PD  +Y  L+ G  ++    E +  L+ M+  G+     D++ F   +
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP---DHHVFNILI 378

Query: 584 SRAGRSYVLDE---LAQKMRFSG 603
               +   +DE   +  KMR  G
Sbjct: 379 CAYAKQEKVDEAMLVFSKMRQHG 401



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 152/317 (47%), Gaps = 23/317 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   N  TY +++ IL ++   +  +   E+M ++GL  ++  +   +++     +  KA
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKA 460

Query: 299 VA-IFELMNKYKFKAGVDTI--NCLLENLGRSKLPKEAQLLFD-KLKHRFTPNLTTYTVL 354
              I E++++      ++TI  N ++ +  +     E++ LFD  ++    PN+ TY+ L
Sbjct: 461 EELILEMLDR---GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
           + G+C    + EA ++ + M   G KPD V +N ++ G  ++ +  DA+ LF+ M + G 
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 415 SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474
           SPN+ +Y I               ++ G  + RR     +L   + + G   +  TYN +
Sbjct: 578 SPNIITYNI---------------ILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNII 622

Query: 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
           +  +    + DEA+R+++ +  +  +    T+N+++ +  + G  +  + ++      G 
Sbjct: 623 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGL 682

Query: 535 CPDDNSYTVLIGGLISQ 551
            P+  +Y ++   +I Q
Sbjct: 683 VPNYWTYRLMAENIIGQ 699



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 148/331 (44%), Gaps = 19/331 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N   Y S++  L    +++    ++ EM ++G+ L+   F   +++        ++
Sbjct: 436 GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIES 495

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
             +F+LM +   K  V T + L++    + K+ +  +LL         P+  TY  L+ G
Sbjct: 496 EKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLING 555

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +CRV  + +A  ++ EM+  G  P+++ +NI+L+GL    + + A +L+  +   G    
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE 615

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI-K 476
           + +Y I++   CK N       +  F N    D+      ++E R       T+N +I  
Sbjct: 616 LSTYNIILHGLCKNNLTDEA--LRMFQNLCLTDL------QLETR-------TFNIMIGA 660

Query: 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           L+K+ +  DEA  ++     +G  P   TY ++ ++    G  E   +++  M   GC  
Sbjct: 661 LLKVGR-NDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTV 719

Query: 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           D      ++  L+ +     A  YL  + EK
Sbjct: 720 DSGMLNFIVRELLQRGEITRAGTYLSMIDEK 750


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 172/373 (46%), Gaps = 24/373 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G + +  TYN +++ L +AR  +   ++L +M +KG+L    T+   +  +++  + K+A
Sbjct: 246 GISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEA 305

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-PNLTTYTVLLGG 357
           V + + M        V T+N L+ +L +    K+A+ +FD +  +    ++ +Y ++L G
Sbjct: 306 VRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNG 365

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           +     L++   ++N M+  G  PD    N++++   K G    A  +F  M+ +G  P+
Sbjct: 366 YATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPD 425

Query: 418 VRSYTIMIWKFC---KQNAAV-----------------YTCLITGFGNRRRMDIVYDLLK 457
           V +Y+ +I   C   K + AV                 Y  LI GF     +    DL+ 
Sbjct: 426 VVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVL 485

Query: 458 EMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           +M  +G  PD   +N +I  L K+ ++ D A  I+   +  G  P +  YN +M  Y   
Sbjct: 486 QMMNKGMRPDIGCFNFIINNLCKLGRVMD-AQNIFDFTISIGLHPNVMVYNTLMDGYCLV 544

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G  E   +V+D M+  G  P+   Y  L+ G     R  E      E+L KG+K     Y
Sbjct: 545 GKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLY 604

Query: 577 NKFAADLSRAGRS 589
           N     L +AGR+
Sbjct: 605 NIILHGLFQAGRT 617



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 168/387 (43%), Gaps = 24/387 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G   +  T NS+M+ L +  + +    + + M  KG  + + ++KI +N +A        
Sbjct: 316 GILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDL 375

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +F LM            N L++   +  +   A ++F++++ +   P++ TY+ ++  
Sbjct: 376 TELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAA 435

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            CR+  + +A   +N+MID+G  P +  ++ +++G    G    A  L   M  KG  P+
Sbjct: 436 LCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPD 495

Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
           +  +  +I   CK                     N  VY  L+ G+    +M+    +  
Sbjct: 496 IGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFD 555

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
            M   G  P+ + Y  L+    K+ ++ DE + +++E++  G KP+   YN+I+   FQ 
Sbjct: 556 VMVSAGIQPNVVVYGTLVNGYCKVGRI-DEGLSLFREILHKGIKPSTTLYNIILHGLFQA 614

Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
           G     +  + EM   G   D  +Y++++GGL     S EA    +E+    +K  +   
Sbjct: 615 GRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTL 674

Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603
           N   A + +  R     +L   +  SG
Sbjct: 675 NIMIAGMFQIRRVEEAKDLFASISRSG 701



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 16/333 (4%)

Query: 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
           ++ Q + ++ M+ E G   L +   +   ++ F    +  KA  +F  M +      + T
Sbjct: 194 KSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLST 253

Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
            NC++  L +++   +A+ +  ++  +   P+  TY  L+ G+       EA RV  +M 
Sbjct: 254 YNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMT 313

Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435
            +G  PDVV  N ++  L K GK  DA  +F+ M  KG   ++ SY IM+  +     A 
Sbjct: 314 SQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGY-----AT 368

Query: 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495
             CL+           + +L   M   G  PD   +N LIK      M D A  I+ EM 
Sbjct: 369 KGCLVD----------LTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMR 418

Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
             G +P + TY+ ++ +  + G  +   + +++MI +G  P  ++Y  LI G  +     
Sbjct: 419 EQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLL 478

Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
           +A   + +M+ KGM+  +  +N    +L + GR
Sbjct: 479 KAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGR 511



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 148/355 (41%), Gaps = 22/355 (6%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G A +S  +N ++    +    +    +  EM E+G+   + T+   + A     +   A
Sbjct: 386 GIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDA 445

Query: 299 VAIFELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
           V  F  M        + T + L++       L K   L+   +     P++  +  ++  
Sbjct: 446 VEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINN 505

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C++  +M+A  +++  I  G  P+V+ +N +++G   +GK  +A+++F+VM + G  PN
Sbjct: 506 LCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPN 565

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
           V  Y  ++  +C                    K +  +Y  ++ G     R         
Sbjct: 566 VVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFH 625

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
           EM E G   D  TY+ ++  +      DEA+ ++KE+     K  I T N+++   FQ  
Sbjct: 626 EMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIR 685

Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572
             E  + ++  + R G  P   +Y++++  LI +    EA      M   G + P
Sbjct: 686 RVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQP 740



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 126/312 (40%), Gaps = 19/312 (6%)

Query: 298 AVAIFELMNKYK----FKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYT 352
           AVA+F  +++          + T   L++   R+  PK     F + LK     +    +
Sbjct: 88  AVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMIS 147

Query: 353 VLLGGWCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
            LL G C  K   EA  +  + M   G  PDV ++ I+L+ L    K   A +L  +M  
Sbjct: 148 NLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE 207

Query: 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY 471
            G               C  NA  Y  +I GF     ++   DL  EM +RG  PD  TY
Sbjct: 208 GG-------------AVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTY 254

Query: 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531
           N ++  +   +  D+A  I ++MV  G  P   TYN ++  Y  TG ++   +V  +M  
Sbjct: 255 NCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTS 314

Query: 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591
           +G  PD  +   L+  L    +  +A    + M  KG K  +  Y       +  G    
Sbjct: 315 QGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVD 374

Query: 592 LDELAQKMRFSG 603
           L EL   M   G
Sbjct: 375 LTELFNLMLSDG 386



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 27/298 (9%)

Query: 330 PKEAQLLFDKLKHR-----FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
           P  A  LF+++         +P L TY +L+    R          + +++  G   D +
Sbjct: 85  PALAVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTI 144

Query: 385 AHNIMLEGLLKIGKRSDAIK-LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443
             + +L GL +  + ++A+  L   M   G  P+V SY I++   C              
Sbjct: 145 MISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSD------------ 192

Query: 444 GNRRRMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501
              R+     +LL+ M E G  C P+ + YN +I     +   ++A  ++ EMV+ G  P
Sbjct: 193 ---RKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISP 249

Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561
            + TYN ++ +  +    +    +  +M+ +G  PD+ +Y  LI G  S  +  EA +  
Sbjct: 250 DLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVS 309

Query: 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSY----VLDELAQKMRFSGKFEVSNVLARWA 615
           ++M  +G+   V+  N   A L + G+      V D +A K + +  F    +L  +A
Sbjct: 310 KKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYA 367


>gi|413921119|gb|AFW61051.1| hypothetical protein ZEAMMB73_101655 [Zea mays]
          Length = 461

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 204/457 (44%), Gaps = 44/457 (9%)

Query: 176 ADPRE---IERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP--AFR 230
           A+PR    +E +C+V          +EA L  CGI  +  +   VL+     +RP  A R
Sbjct: 15  ANPRAEAFLEIICRVPA------GEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVR 68

Query: 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM---GEKGLLSMETFKIAMN 287
           FF WAG     +H +  +N ++ ILG+A  FE+M   +  M   G  GL+S+ TF     
Sbjct: 69  FFRWAGQS--VSHTAYAWNLLVDILGKAAMFESMWDAIRSMKQEGGSGLVSVATFA---- 122

Query: 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTP 346
           ++  A   K A+A  ++M++Y  K     +N LL  + R +   ++AQ +F++ K    P
Sbjct: 123 SYCTAGNIKDAIAALDVMDRYGLKHDAVALNSLLSAICRVEGRVQDAQDVFERTKATIPP 182

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GF-KPDVVAHNIMLEGLLKIGKRSDAIK 404
           +  T+ +LL  W +  N + A  V+ EM+ + G+   +V A++  L  L++ G   +A K
Sbjct: 183 DGDTFAILLEAWEKEGNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFK 242

Query: 405 LFEVMKAKGPSPNVRSYT---------------IMIWKFCKQNA------AVYTCLITGF 443
             +VM++KG  P +  ++               + IW      A      ++Y+ +I   
Sbjct: 243 FLQVMRSKGCLPGINFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLH 302

Query: 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
            N   +D    LL EM       + +TY+ +++     +   EA     EM ++   PT 
Sbjct: 303 CNAGSIDDALGLLDEMPLNDVFANSVTYHTILEGFIKHRKAREAESFLTEMSKNEQLPTA 362

Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
                 +  +F+  N      VW  +        ++S   LI GL+   R  E  K  +E
Sbjct: 363 SNCAAAISLFFKEFNPSASIDVWRCIEEHNITLAEDSAKELIAGLLDFGRFTEVTKRADE 422

Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           M++  ++             ++AGR    D +A++++
Sbjct: 423 MIDMRVELSRSTMENMKRAFAKAGRHQSYDNIARRLK 459


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 174/426 (40%), Gaps = 68/426 (15%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG----LLSMETFKIAMNAFAAAKER 295
           G   N  TYN ++  L +  + +    +L EM  KG    ++S  T   +M+     +E 
Sbjct: 179 GKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEA 238

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR------------ 343
           ++           +F+  V   N L+    R    KE  LL  ++  +            
Sbjct: 239 REL--------SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTV 290

Query: 344 ------------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF 379
                                    +PN+ T+T L+ G+     ++EA  +WN M ++GF
Sbjct: 291 ISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGF 350

Query: 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF----------- 428
           +P+VVA+N ++ GL   GK  +A+ +   M+  G SPNV +Y  +I  F           
Sbjct: 351 EPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASE 410

Query: 429 ---------CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
                    C  N  VYT ++            + L+++M    CPP+ +T+N  IK + 
Sbjct: 411 IWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLC 470

Query: 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539
                + A+ ++ +M + G  P I TYN ++    +    +   ++  EM  +G   +  
Sbjct: 471 CSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLV 530

Query: 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           +Y  + GG  +  +  EA K L +ML  G+K   + YN         G+     +L  K+
Sbjct: 531 TYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKL 590

Query: 600 RFSGKF 605
              GK+
Sbjct: 591 SAGGKW 596



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 177/392 (45%), Gaps = 24/392 (6%)

Query: 216 DVLERFRHARRP--AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE 273
           DV+ R R       A  +F    +   F H   TY  M+  LGR    + +  +L++M  
Sbjct: 48  DVVMRLRTETDIVLASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKL 107

Query: 274 KGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332
           +G+  S + F   +N +      ++A+ +F  + ++  +  V   N LL+ +      + 
Sbjct: 108 EGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQM 167

Query: 333 AQLLFDKLKHRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391
            + ++  +K     PN+ TY +LL   C+   +  A ++  EM +KG +PDVV++  ++ 
Sbjct: 168 IEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVIS 227

Query: 392 GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451
            + K+GK  +A                R  +I   +F + N +VY  LI GF    ++  
Sbjct: 228 SMSKLGKVEEA----------------RELSI---RF-QPNVSVYNALINGFCREYKVKE 267

Query: 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511
           V+ LL +M E+G  P+ +TY+ +I  +      + A+ ++ +M   G  P ++T+  +MK
Sbjct: 268 VFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMK 327

Query: 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
            YF  G       +W+ M   G  P+  +Y  LI GL S  + GEA     +M   G   
Sbjct: 328 GYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSP 387

Query: 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            V  Y       ++AG      E+  KM  +G
Sbjct: 388 NVSTYGALIDGFAKAGDLVGASEIWNKMMTNG 419



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 170/384 (44%), Gaps = 29/384 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G   N  TY++++S L      E  +++  +M  +G   ++ TF   M  +       +A
Sbjct: 279 GIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEA 338

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRFTPNLTTYTVLLGG 357
           + I+  M +  F+  V   N L+  L       EA  +  K+ ++  +PN++TY  L+ G
Sbjct: 339 LNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDG 398

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
           + +  +L+ A  +WN+M+  G  P+VV +  M+  L +    S A  L E M      PN
Sbjct: 399 FAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPN 458

Query: 418 VRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRMDIVYDLLK 457
             ++   I   C                      N   Y  ++ G     R+    +L+ 
Sbjct: 459 TVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVT 518

Query: 458 EMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
           EMEE+G   + +TYN +      + K  +EA+++  +M+  G KP   TYN +  +Y   
Sbjct: 519 EMEEKGMELNLVTYNTIFGGFCNVGKF-EEALKLLGKMLVGGVKPDAITYNTLTYAYCMQ 577

Query: 517 GNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
           G  +   ++ D++   G   P+  +YT L+ G+ +Q    EA  YL++ML +G+      
Sbjct: 578 GKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAAT 637

Query: 576 YNKFA----ADLSRAGRSYVLDEL 595
           +N         L   G  ++LD++
Sbjct: 638 WNALVRGLFNSLGHLGPIHILDDI 661



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAM 286
           A   FC   ++ G + N +TYN ++  L +  + +  + ++ EM EKG+ L++ T+    
Sbjct: 478 AINLFCQM-EQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIF 536

Query: 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RF 344
             F    + ++A+ +   M     K    T N L          K A  L DKL    ++
Sbjct: 537 GGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKW 596

Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
            P +  YT LL G C    + EA    ++M+++G   +    N ++ GL 
Sbjct: 597 VPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLF 646


>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 691

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 196/449 (43%), Gaps = 40/449 (8%)

Query: 187 VIDELFSLDRNM------EAVLDECGINLSHNLVVDVLERFRHARRPA--FRFFCWAGDK 238
           V++E+  L RN+      E  L+E    +S    + V+E     +        F W   +
Sbjct: 147 VVEEILHLARNLPQNLTLEEALEEYDKRVSEKECLKVMEILGEEQLVVCCLYLFQWMRSQ 206

Query: 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEM-GEKGLLSMETFKIAMNAFAAAKERKK 297
                  + Y ++  +LGRAR  + ++ +   +   K   ++  +  A++        K 
Sbjct: 207 EPSLVTPKVYTTLFPLLGRARMGDKLMVLFRNLPSSKEFRNVRVYNAAISGLLYDGRYKD 266

Query: 298 AVAIFELMNKYKFKAGV--DTINCLLENLGRSKL---PKEAQLLFDKLKHRFTP-NLTTY 351
           A  ++E M       GV  D + C +  +G  KL    K+A   F+K+  +        +
Sbjct: 267 AWKVYESMET----DGVLPDHVTCSIMIIGMRKLGHSAKDAWQFFEKMNQKGVRWGKEAF 322

Query: 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411
             L+  +C    L EA  + +EM  KG   + + +N +++   K  +  +A  LF  MKA
Sbjct: 323 GALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKA 382

Query: 412 KGPSPNVRSYTIMIWKFC--------------------KQNAAVYTCLITGFGNRRRM-D 450
           KG  P   ++ I+++ +                     K NA  YTCLI+ +G +++M D
Sbjct: 383 KGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSD 442

Query: 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510
           +  D   +M++ G  P   +Y A+I    +    ++A  +++ M+R G KP+I TY  ++
Sbjct: 443 MAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLL 502

Query: 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
            ++ + G+ E   K+W  M+         ++ +L+ G   Q    EA   + E  + G++
Sbjct: 503 DAFRRVGDTETLMKIWKLMMSEKVKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQ 562

Query: 571 APVLDYNKFAADLSRAGRSYVLDELAQKM 599
             V+ YN      +R G    + +L ++M
Sbjct: 563 PTVMTYNMLINAYARGGLDSNIPQLLKEM 591



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 135/318 (42%), Gaps = 32/318 (10%)

Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKER 295
           +K G + N+  YN++M    ++ + E    +  EM  KG+  +  TF I M A++   + 
Sbjct: 346 EKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQP 405

Query: 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLK--------HRFTP 346
           K   ++   M  +  K   ++  CL+   GR K +   A   F K+K        H +T 
Sbjct: 406 KIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTA 465

Query: 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406
            +  Y+V   GW       +A  V+  MI +G KP +  +  +L+   ++G     +K++
Sbjct: 466 MIHAYSV--SGWHE-----KAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETLMKIW 518

Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
           ++M ++                 K     +  L+ GF  +       D++ E  + G  P
Sbjct: 519 KLMMSEK---------------VKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQP 563

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
             +TYN LI       +     ++ KEM     +P   TY+ ++ ++ +  +++      
Sbjct: 564 TVMTYNMLINAYARGGLDSNIPQLLKEMEALRLRPDSITYSTVIYAFVRVRDFKRAFFYH 623

Query: 527 DEMIRRGCCPDDNSYTVL 544
            EM++ G   D +SY  L
Sbjct: 624 KEMVKSGYVMDISSYRKL 641



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 159/375 (42%), Gaps = 19/375 (5%)

Query: 212 NLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEM 271
           ++++  + +  H+ + A++FF     K G       + +++            + +  EM
Sbjct: 287 SIMIIGMRKLGHSAKDAWQFFEKMNQK-GVRWGKEAFGALIKSFCVEGLLSEALIIQSEM 345

Query: 272 GEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330
            +KG+ S    +   M+A+  +   ++A  +F  M     K    T N L+    R   P
Sbjct: 346 EKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQP 405

Query: 331 KEAQLLFDKLK-HRFTPNLTTYTVLLGGWCRVKNLME-AGRVWNEMIDKGFKPDVVAHNI 388
           K  + L  ++K     PN  +YT L+  + R K + + A   + +M   G KP   ++  
Sbjct: 406 KIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTA 465

Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448
           M+      G    A  +FE M  +G  P++ +YT ++  F +             G+   
Sbjct: 466 MIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRR------------VGDTET 513

Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
           +  ++ L+   + +G     +T+N L+     Q +  EA  +  E  + G +PT+ TYNM
Sbjct: 514 LMKIWKLMMSEKVKGT---QVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYNM 570

Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
           ++ +Y + G      ++  EM      PD  +Y+ +I   +       A+ Y +EM++ G
Sbjct: 571 LINAYARGGLDSNIPQLLKEMEALRLRPDSITYSTVIYAFVRVRDFKRAFFYHKEMVKSG 630

Query: 569 MKAPVLDYNKFAADL 583
               +  Y K  A L
Sbjct: 631 YVMDISSYRKLRAIL 645


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 188/382 (49%), Gaps = 24/382 (6%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302
           N  TY++++S      + +  + +  +M  + +   + TF I ++AF      K+A    
Sbjct: 244 NIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGL 303

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRV 361
            +M K   K  + T N L++          A+ + + + HR  T  + +Y +++ G+C++
Sbjct: 304 AMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKI 363

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
           K + +A +++ EM  K   P+V+ +N +++GL K G+ S A++L ++M  +G  P++ +Y
Sbjct: 364 KMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITY 423

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           + ++   CK +                +D    LL +++++G  P+  TY  LI  +   
Sbjct: 424 SSILDALCKNHL---------------VDKAIALLIKLKDQGIRPNMYTYTILIDGLCKG 468

Query: 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541
              ++A  I+++++  G+  T++TY ++++ +   G ++    +  +M    C PD  +Y
Sbjct: 469 GRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITY 528

Query: 542 TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601
            ++I  L  +D + +A K L EM+ +G+    L+Y  ++     A   ++ ++    ++ 
Sbjct: 529 EIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNND---SLQC 585

Query: 602 SGKFEVSNVLARWAETTKNRVY 623
           +   E  N    WA+    R+Y
Sbjct: 586 TSSQESGN----WAKLLLERIY 603



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 139/345 (40%), Gaps = 23/345 (6%)

Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL-PKEAQLLFDKL 340
           F   + +   +K     +++F+ M     K      N L+    +  L P    +L   L
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKIL 132

Query: 341 KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
           K  + P+  T    + G+C    + +A    ++++  GF  D V++  ++ GL K+G+  
Sbjct: 133 KMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETR 192

Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLI 440
            A++L   +  K    +V  Y+ +I   CK                     N   Y+ LI
Sbjct: 193 AALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALI 252

Query: 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500
           +GF    ++     L  +M      PD  T+N L+     +    EA      M++ G K
Sbjct: 253 SGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK 312

Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560
           P I TYN +M  Y       M + + + M  RG      SY ++I G        +A K 
Sbjct: 313 PDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKL 372

Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGR-SYVLDELAQKMRFSGK 604
            +EM  K +   V+ YN     L ++GR SY L EL   M   G+
Sbjct: 373 FKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL-ELIDLMHDRGQ 416



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 165/391 (42%), Gaps = 68/391 (17%)

Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERK 296
           K G   +  TYNS+M       +     S+L  M  +G+  ++ ++ I +N F   K   
Sbjct: 308 KQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVD 367

Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF-TPNLTTYTVLL 355
           +A+ +F+ M+  +    V T N L++ L +S     A  L D +  R   P++ TY+ +L
Sbjct: 368 QAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSIL 427

Query: 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415
              C+   + +A  +  ++ D+G +P++  + I+++GL K G+  DA  +FE +  KG +
Sbjct: 428 DALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYN 487

Query: 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
             V +YT+MI  FC                    D    LL +M++  C PD +TY  +I
Sbjct: 488 LTVNTYTVMIQGFCSHGL---------------FDEALSLLSKMKDNSCIPDAITYEIII 532

Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN------MIMKSYF------------QTG 517
             +  +   D+A ++ +EM+  G   +   Y       M   ++F            ++G
Sbjct: 533 CSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESG 592

Query: 518 NYEMGRKVWDEMIRRGC-------------CP-----------------DDNSYTVLIGG 547
           N+    K+  E I   C             CP                 D N+YTV+I G
Sbjct: 593 NWA---KLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQG 649

Query: 548 LISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
             S     E+   L +M   G     + Y++
Sbjct: 650 FCSHGLFDESLALLSKMEVNGCIPDAVTYDR 680



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 20/258 (7%)

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+   TP    +  +LG   + K+      ++ +M  +G KP+ V  NI++    ++G  
Sbjct: 62  LRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLI 121

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
             A  +   +   G  P+  +    I  FC +                    +   Y  L
Sbjct: 122 PFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTL 181

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G           +LL+ ++ +    D + Y+ +I  M   K  ++A  +Y EMV    
Sbjct: 182 INGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRI 241

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
              I TY+ ++  +   G  +    ++++M      PD  ++ +L+     + R  EA  
Sbjct: 242 SSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKN 301

Query: 560 YLEEMLEKGMKAPVLDYN 577
            L  M+++G+K  ++ YN
Sbjct: 302 GLAMMMKQGIKPDIVTYN 319



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 116/275 (42%), Gaps = 29/275 (10%)

Query: 320 LLENLGRSKLPKEAQ-LLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           LL ++ R  +PK+     F +  H  F  + +T T          ++++A  ++N ++ +
Sbjct: 9   LLRSVFRVSVPKKFHPFQFPENTHFYFIHSFSTSTTFHNN----NDVVDAVSLFNCLLRQ 64

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
              P  +    +L  L+K       + LF+ M+ +G  PN  ++ I+I  FC+     + 
Sbjct: 65  NPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFA 124

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
                          + +L ++ + G  PD +T N  IK   ++    +A+  + ++V  
Sbjct: 125 ---------------FSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVAL 169

Query: 498 GFKPTIHTYNMIMKSYFQTGN----YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553
           GF     +Y  ++    + G      E+ R+V  ++++     D   Y+ +I  +     
Sbjct: 170 GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQL----DVVMYSTIIDSMCKDKN 225

Query: 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588
             +A+    EM+ + + + ++ Y+   +     G+
Sbjct: 226 VNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGK 260



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
           + +   PPD + +  ++  +   K     + ++++M   G KP    +N+++  + Q G 
Sbjct: 62  LRQNPTPPD-MEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGL 120

Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
                 V  ++++ G  PD  +    I G   + +  +A  + ++++  G     + Y  
Sbjct: 121 IPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGT 180

Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKF 605
               L + G +    EL +  R  GK 
Sbjct: 181 LINGLCKVGETRAALELLR--RVDGKL 205


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 179/398 (44%), Gaps = 33/398 (8%)

Query: 210 SHNLVVDVLER---FRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVS 266
           ++N ++  L R    RHA+R     +     + G+  ++ T+NS++    R +Q E    
Sbjct: 131 TYNALIRALCRRADLRHAQR-----YLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHD 185

Query: 267 MLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325
           +  +M  +G      ++   +  F  A    +A+ +F  M +      + T   L++ L 
Sbjct: 186 LFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLC 241

Query: 326 RSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384
            +   +E   +  K+K   + P    Y  L+  WCR +   EA ++ NEM D G  P VV
Sbjct: 242 DAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVV 301

Query: 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444
              I++    + G+ S A+++FE M+ KG  PNV +Y  ++  FC     VY  +     
Sbjct: 302 TCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNA-GKVYKAMA---- 356

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH 504
                     LL +M E G  PD +TYN LI+   I      A R+ + M  +G     +
Sbjct: 357 ----------LLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQY 406

Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
           TYN+++ +  +TG  +    ++D +  RG  P+  ++  +I GL    +   A  +LE M
Sbjct: 407 TYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENM 466

Query: 565 LEKGMKAPVLDYNKFAADLSRAGRS----YVLDELAQK 598
           +  G       Y+ F  +L +   S    + +DE+ QK
Sbjct: 467 ISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQK 504



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 17/352 (4%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKA 298
           G+   +R Y +++ +  R ++ E    +L EM + GL+  + T  I +NA+        A
Sbjct: 260 GWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGA 319

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGG 357
           V +FE M     +  V T N +++    +    +A  L D+++     P++ TY +L+ G
Sbjct: 320 VRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRG 379

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C   ++  A R+   M   G   D   +N++++ L K GK  +A  LF+ ++ +G  PN
Sbjct: 380 QCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN 439

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             ++  +I   CK                 + D+    L+ M   G  PD  TY+  I+ 
Sbjct: 440 SVTFNTVINGLCKAG---------------KFDVACTFLENMISAGYAPDTYTYSPFIEN 484

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +   K   E +    EM++   KP+   Y +++   F   NY +  ++W +M+ +GC PD
Sbjct: 485 LCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPD 544

Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589
             +YT  +    ++ R  EA   + EM +       + YN      +  G++
Sbjct: 545 VVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQT 596



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 148/344 (43%), Gaps = 25/344 (7%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340
           T+   + A     + + A     LM +  ++    T N L+    R++  + A  LF K+
Sbjct: 131 TYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKM 190

Query: 341 KHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
             R F+ +  +Y  L+ G+C    + EA  ++ EM     +PD+  H  +++GL   G+ 
Sbjct: 191 PFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT----QPDMYTHAALVKGLCDAGRG 246

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA------------------VYTC--L 439
            + + + + MK  G  P  R+Y  ++  +C++  A                  V TC  +
Sbjct: 247 EEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIV 306

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           +  +    RM     + + M  +GC P+  TYNA+++         +A+ +  +M   G 
Sbjct: 307 VNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGV 366

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           +P + TYN++++     G+     ++   M   G   D  +Y VLI  L    +  EA  
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACS 426

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
             + +  +G++   + +N     L +AG+  V     + M  +G
Sbjct: 427 LFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAG 470



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 21/286 (7%)

Query: 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLT--TYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           LL +  R  L      LF  +     P  T  TY  L+   CR  +L  A R  + M+  
Sbjct: 99  LLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRS 158

Query: 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437
           G++PD    N ++ G  +  +   A  LF  M  +G S               Q+A  Y 
Sbjct: 159 GWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFS---------------QDAVSYA 203

Query: 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497
            LI GF    R+D   +L +EM +    PD  T+ AL+K +      +E + + ++M   
Sbjct: 204 ALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKMKEL 259

Query: 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557
           G++PT   Y  ++  + +    E   K+ +EM   G  P   + T+++     + R   A
Sbjct: 260 GWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGA 319

Query: 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            +  E M  KG +  V  YN        AG+ Y    L  +MR  G
Sbjct: 320 VRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECG 365



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/401 (20%), Positives = 152/401 (37%), Gaps = 76/401 (18%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
           G A +  TYN ++  L +  + +   S+ + +  +G+     TF   +N    A +   A
Sbjct: 400 GLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVA 459

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
               E M    +     T +  +ENL ++K  +E     D+ L+    P+   YT+++  
Sbjct: 460 CTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINR 519

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVV--------------------------------- 384
               +N   A R+W +M+ +G  PDVV                                 
Sbjct: 520 LFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVD 579

Query: 385 --AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM------------------ 424
             A+N +++G   IG+   A+ + + M      PN  ++ I+                  
Sbjct: 580 AMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKAT 639

Query: 425 -IWK------------FCKQN-----AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
            +WK              K+N     A  Y  ++ GF   RR+D V  L+  M+E   P 
Sbjct: 640 SVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPL 699

Query: 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
           +   YNAL+      +M  +A  +   M+  GF P +  Y  ++      G  +  ++++
Sbjct: 700 NEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIF 759

Query: 527 DEMIRRGCCPDDNSYTVLIGGLISQ---DRSGEAYKYLEEM 564
                +    D+  + V+I G I +   D   +    LE+M
Sbjct: 760 RSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQM 800



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 16/184 (8%)

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-NLTTYT 352
           E      +FELM K    +   T   +LE     +   E   L   +K    P N   Y 
Sbjct: 646 ELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYN 705

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+  +C+++   +A  +   MI  GF P+++ +  +L GL   G+   A ++F   +  
Sbjct: 706 ALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSR-- 763

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                        WK    +  V+  +I GF  +   D+ +D++  +E+  C P   TY 
Sbjct: 764 -------------WKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYA 810

Query: 473 ALIK 476
            L +
Sbjct: 811 MLTE 814



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 19/157 (12%)

Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLL 336
           S  T+   +  F+  +   +  ++  LM +       D  N L+    + ++  +A  LL
Sbjct: 665 SARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALL 724

Query: 337 FDKLKHRFTPNLTTYTVLLGGWC------RVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390
              + H F PNL  Y  LL G        R K +  + R W E     +  D +   +++
Sbjct: 725 CSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSR-WKE-----YNTDEIVWKVII 778

Query: 391 EGLLKIGKRS---DAIKLFEVMKAKGPSPNVRSYTIM 424
           +G ++ G      D I + E MK K   P+  +Y ++
Sbjct: 779 DGFIRKGHADMCHDMISMLEQMKCK---PSDETYAML 812


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 160/344 (46%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   ++E+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEES 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N ++ G +KIG  
Sbjct: 128 LECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
            +  +L  VM+A G  P+V +++++I   CK+                    N   +T L
Sbjct: 188 DEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ ++M  +   PD +TYN LI  +  +    +   +  EM   G 
Sbjct: 248 IDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXG 411



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 17/300 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             +  +M     +  V T + L+  L +     +A  LFD+ L +   PN  T+T L+ G
Sbjct: 191 FRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G       L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT +I   CK+       L T F  R+RM      +KE        D   Y ALI  
Sbjct: 311 KITYTTLIDGNCKEGD-----LETAFEYRKRM------IKE----NIRLDDXAYTALISG 355

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
           +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R G  P+
Sbjct: 356 LCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPN 415



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 17/233 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  T++ +++ L +  + +    + +EM + GL+ +  TF   ++          A
Sbjct: 201 GVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I+  M        + T N L+  L +    K+   L D++  +   P+  TYT L+ G
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  +L  A      MI +  + D  A+  ++ GL + G+  DA K+   M + G  P 
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
           + +YT++I +FCK+   V+T      G++        LLKEM+  G  P+ +T
Sbjct: 381 IGTYTMIINEFCKK-GDVWT------GSK--------LLKEMQRXGYXPNXVT 418


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 161/344 (46%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+  + L  ++KF+   DT   +LE+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEEN 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  + +   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           ++  +L   M+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ K+M  +   PD +TYN LI  +  +    +A  +  EM+  G 
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 22/304 (7%)

Query: 255 LGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313
           L + + F+ +    EE  E G   S+  F I M++F    E + A ++F+ + K+  +  
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372
           V + N L+    +     E   L + ++     P++ TY+VL+ G C+   + +A  +++
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 373 EMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431
           EM+DKG  P+ V    +++G  K G+   A+++++ M ++  SP++ +Y  +I+  CK+ 
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                              +   YT LI G      ++  ++  K M +     D + Y 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
           ALI  +  +    +A ++ +EM+  G KP I TY MI+  + + G+   G K+  EM R 
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 533 GCCP 536
           G  P
Sbjct: 411 GYMP 414



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 22/288 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +     +A +LFD++  +   PN  T+T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLK 457
             +YT +I   CK+                    +   YT LI+G     R      +L+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT 505
           EM   G  P+  TY  +I     +       ++ KEM R G+ P++ T
Sbjct: 371 EMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 170/362 (46%), Gaps = 25/362 (6%)

Query: 247 TYNSMMS-ILGRARQFETMVSMLEEMGEKGLLSME--TFKIAMNAFAAAKERKKAVAIFE 303
            YN +MS ++GR R  + +V++ E   +  + S +  +F + +       + +KA+ + E
Sbjct: 48  AYNKLMSSLIGRGRVHD-VVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 106

Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRV 361
            MN++       T N L++ L R+        +  +L+      PN+ T+T ++ G+C+ 
Sbjct: 107 RMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 166

Query: 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421
             L +A  V+N+M+  G  P+ V +N+++ G  K+G    A+++++ M      P+V ++
Sbjct: 167 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 226

Query: 422 TIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ 481
           + +I  +C+                 ++D    +  +M +    P+  T++ +I  +  Q
Sbjct: 227 SSLIDGYCRCG---------------QLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQ 271

Query: 482 KMPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540
              DEA+ +  E+ +R    P    YN ++    + G  +    +   M  +GC PD  +
Sbjct: 272 NRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYT 331

Query: 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600
           YT+LI G   + R  EA  +  EM+E G     +  N F + L +AG     +E+   MR
Sbjct: 332 YTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP---NEVDHVMR 388

Query: 601 FS 602
            +
Sbjct: 389 LA 390



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 25/286 (8%)

Query: 208 NLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAH-NSRTYNSMMSILGRARQFETM 264
            ++HN++VD L R     R     R       + G    N  T+ S++S   +A + E  
Sbjct: 117 TVTHNILVDGLCRTNEVSRGHEVLRRL----QRDGVCMPNVVTFTSVISGYCKAGKLEDA 172

Query: 265 VSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323
           +++  +M   G++ +  T+ + +N +    +   AV +++ M + +    V T + L++ 
Sbjct: 173 MAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDG 232

Query: 324 LGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM-IDKGFKP 381
             R  +L    ++  D  +HR  PN+ T+++++   C+     EA  + NE+ +     P
Sbjct: 233 YCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAP 292

Query: 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441
               +N +++ L K GK  +A  + + M+ KG  P+  +YTI+I  +C ++         
Sbjct: 293 QAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS--------- 343

Query: 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
                 R+        EM E GC PD +T N  I  +    MP+E 
Sbjct: 344 ------RISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEV 383



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 2/173 (1%)

Query: 429 CKQNAAVYTCLITGFGNRRRM-DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487
           C+  A  Y  L++    R R+ D+V    + +++R   PD  ++N +IK +       +A
Sbjct: 42  CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKA 101

Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIG 546
           + + + M   G  P   T+N+++    +T     G +V   + R G C P+  ++T +I 
Sbjct: 102 LELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVIS 161

Query: 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
           G     +  +A     +M+  G+    + YN       + G      E+ Q+M
Sbjct: 162 GYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 214


>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 192/408 (47%), Gaps = 29/408 (7%)

Query: 184 VCKVIDELFSLDRN-MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFA 242
           +C+V   L  + RN ++  L   G+  S  LV +VL    ++   A +FF WA  +    
Sbjct: 45  ICEV---LVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAIKFFRWA--RQLAK 99

Query: 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIF 302
            ++ ++N M+ +LG+   FE M + +  M ++ +LS+ TF     ++ +A   K+A   F
Sbjct: 100 QSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCSAGRSKEARMTF 159

Query: 303 ELMNKYKFKAGVDTINCLLENL-GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361
           E+M++Y+ +  V  +N LL  +        EA   F+K K +   +  ++ +LL GW + 
Sbjct: 160 EVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGESFAILLEGWEKE 219

Query: 362 KNLMEAGRVWNEMIDK-GFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419
            N+ +A   ++EM+ + G+ P+ V +++  L  L++ G+  DAIK+   +K     P ++
Sbjct: 220 GNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKLKKNRCLPGLK 279

Query: 420 ---------------SYTIMIWKFCK-----QNAAVYTCLITGFGNRRRMDIVYDLLKEM 459
                          ++ I++W          N  VY  +I       ++D  + LL  M
Sbjct: 280 FLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKIDDSFRLLDSM 339

Query: 460 EERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519
              G  P+ LTYN +   +   K   E  + ++EMV++   PT  +    +   F   + 
Sbjct: 340 VFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSCAAAITMLFDGYDP 399

Query: 520 EMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567
           E    +W+ M      P D S   L+ GL + +R  E  ++ ++M+++
Sbjct: 400 ETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMIDQ 447



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 120/269 (44%), Gaps = 19/269 (7%)

Query: 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377
           N +++ LG+++L +E       ++     +L T+  + G +C      EA   +  M   
Sbjct: 106 NLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCSAGRSKEARMTFEVMDRY 165

Query: 378 GFKPDVVAHNIMLEGLL-KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
             + DVVA N +L  +  +  + S+A + FE  K K P  +  S+ I++  + K+     
Sbjct: 166 EVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPL-DGESFAILLEGWEKE----- 219

Query: 437 TCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLT-YNALIKLMKIQKMPDEAVRIYKEM 494
                  GN  +  + +D   EM +R G  P+ ++ Y+A +  +      ++A+++  ++
Sbjct: 220 -------GNVEKAKVTFD---EMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKL 269

Query: 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554
            ++   P +   +  + S  Q  +      +WD ++  G  P+   Y  +IG L    + 
Sbjct: 270 KKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKI 329

Query: 555 GEAYKYLEEMLEKGMKAPVLDYNKFAADL 583
            ++++ L+ M+  G     L YN   + L
Sbjct: 330 DDSFRLLDSMVFHGAFPNSLTYNLIFSSL 358


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 21/344 (6%)

Query: 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK- 339
            F   + A+  +   + A+    L  ++KF+   DT   +LE+L + K  K     +++ 
Sbjct: 68  VFSGLITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEES 127

Query: 340 LKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399
           L+  +  +L  + +L+  +C+   +  A  V++ +   G +P VV+ N ++ G +K+G  
Sbjct: 128 LECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCL 439
           ++  +L   M+A G  P+V +Y+++I   CK+                    N   +T L
Sbjct: 188 NEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTL 247

Query: 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
           I G     R+D+  ++ K+M  +   PD +TYN LI  +  +    +A  +  EM   G 
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559
           KP   TY  ++    + G+ E   +    MI+     DD +YT LI GL  + RS +A K
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367

Query: 560 YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603
            L EML  G+K  +  Y     +  + G  +   +L ++M+  G
Sbjct: 368 MLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 17/299 (5%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
           G+  +   +N +M    +  +     S+ + + + GL  S+ +F   MN +    +  + 
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYTVLLGG 357
             +   M     +  V T + L+  L +     +A  LFD+ L +   PN  T+T L+ G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+   +  A  ++ +M+ +   PD++ +N ++ GL K G    A  L + M  KG  P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
             +YT +I   CK+       L T F  R+ M      +KE        D + Y ALI  
Sbjct: 311 KITYTTLIDGSCKEGD-----LETAFEYRKIM------IKE----NIRLDDVAYTALISG 355

Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP 536
           +  +    +A ++ +EM+  G K  I TY MI+  + + G+   G K+  EM R G  P
Sbjct: 356 LCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 17/233 (7%)

Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKA 298
           G   +  TY+ +++ L +  + +    + +EM + GL+ +  TF   ++          A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
           + I++ M        + T N L+  L +    K+AQ L D++  +   P+  TYT L+ G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
            C+  +L  A      MI +  + D VA+  ++ GL + G+  DA K+   M + G    
Sbjct: 321 SCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLE 380

Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470
           + +YT++I +FCK+   V+T      G++        L+KEM+  G  P  +T
Sbjct: 381 IGTYTMIINEFCKK-GDVWT------GSK--------LMKEMQRDGYVPSVVT 418


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 179/403 (44%), Gaps = 62/403 (15%)

Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIF 302
           N  T++ +++ L +A +    V    +M E+  + ++    + + +   A +  +A+AIF
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIF 61

Query: 303 ELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCR 360
                 +    V T+N L+      +L  +A  LF +++  F   P  TTYT ++  +C+
Sbjct: 62  ---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCK 118

Query: 361 VKNLMEAGRVWNEM------------IDKGF----------------------KPDVVAH 386
           +  L +A ++  E             + +GF                      KPD+VA 
Sbjct: 119 MDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAW 178

Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--------------- 431
           N+++ G  K G+  +A ++ E + + G  PN  +YT +I  FCK                
Sbjct: 179 NVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSS 238

Query: 432 -------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484
                  N   +  LI+G     R++  ++L+K+M+ R    D  TY  L+  +  Q   
Sbjct: 239 RDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRT 298

Query: 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544
            E  R+++EM+R G  P++ TY  ++ ++ + G+ +  ++V   M+ +G  PD  +YTVL
Sbjct: 299 SEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVL 358

Query: 545 IGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587
           + GL    +   A ++ E++L +      + Y+       +A 
Sbjct: 359 LEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAA 401



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 31/280 (11%)

Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
           PN  T++VL+ G C+   L EA   +N+M+++   P++   N++L  L + GK   A+ +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCK---------------------QNAAVYTCLITGFG 444
           F  ++    SP+V +  I+I  FC+                       A  YT +I  + 
Sbjct: 61  FRGIQC---SPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMV-RSGFKPT 502
              R+D    LL+  E   C  D +   ++ +   K Q++ DEA ++  +MV +   KP 
Sbjct: 118 KMDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRV-DEAYQLLLDMVEKKSAKPD 174

Query: 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562
           I  +N+I+  + + G      ++ + ++  GC P+  +YT LI G        EA +  +
Sbjct: 175 IVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 563 EMLEKGMKAP--VLDYNKFAADLSRAGRSYVLDELAQKMR 600
            +  +   A   V+ +N   + L +A R     EL ++M+
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 105/246 (42%), Gaps = 25/246 (10%)

Query: 240 GFAHNSRTYNSMM------SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK 293
           G   N+ TY +++        L  A Q   ++S  +   E  ++   TF   ++    A 
Sbjct: 205 GCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVV---TFNALISGLCKAD 261

Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK-LKHRFTPNLTTYT 352
             + A  + + M     +A   T   L++ L +     E   +F++ L+    P++ TYT
Sbjct: 262 RLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYT 321

Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
            L+   C+  +L +A +V   M+ KG  PDV  + ++LEGL + GK   A + FE     
Sbjct: 322 TLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEK---- 377

Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
                      ++ + C   A VY+ L+ G      +D       EM +R   PD  T  
Sbjct: 378 -----------ILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCK 426

Query: 473 ALIKLM 478
            L++++
Sbjct: 427 LLVEML 432


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,454,350,169
Number of Sequences: 23463169
Number of extensions: 386636495
Number of successful extensions: 1219848
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5670
Number of HSP's successfully gapped in prelim test: 4684
Number of HSP's that attempted gapping in prelim test: 1061338
Number of HSP's gapped (non-prelim): 60720
length of query: 631
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 482
effective length of database: 8,863,183,186
effective search space: 4272054295652
effective search space used: 4272054295652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)