Query 036072
Match_columns 631
No_of_seqs 671 out of 2833
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.8E-54 1.9E-58 489.1 56.2 397 209-608 368-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-52 2.8E-57 479.6 57.0 407 200-611 394-850 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.7E-51 5.8E-56 464.9 47.3 397 195-604 142-559 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1E-51 2.2E-56 479.2 41.9 409 195-611 105-628 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 8.6E-50 1.9E-54 463.0 46.8 408 195-611 206-663 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-49 3.1E-54 450.8 46.6 402 206-622 118-552 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-19 2.4E-24 213.2 52.1 381 227-619 483-882 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.6E-19 5.7E-24 210.0 53.7 365 227-602 449-832 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.7E-24 192.4 36.5 302 253-574 43-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.3E-18 7.2E-23 181.5 37.6 300 286-603 42-348 (389)
11 PRK15174 Vi polysaccharide exp 99.8 4E-15 8.7E-20 166.8 48.8 394 175-601 15-419 (656)
12 PRK15174 Vi polysaccharide exp 99.8 1.9E-15 4.1E-20 169.4 45.7 333 248-603 45-382 (656)
13 PRK11447 cellulose synthase su 99.8 6.4E-14 1.4E-18 167.6 49.5 362 227-600 287-738 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.7 1.4E-13 3.1E-18 154.4 48.7 355 226-604 144-573 (615)
15 PRK11447 cellulose synthase su 99.7 2.3E-13 5E-18 162.9 51.1 364 212-603 236-701 (1157)
16 KOG4626 O-linked N-acetylgluco 99.7 3.4E-15 7.5E-20 153.2 29.9 329 245-600 116-449 (966)
17 PRK10049 pgaA outer membrane p 99.7 5E-13 1.1E-17 153.0 47.7 353 227-603 67-457 (765)
18 TIGR00990 3a0801s09 mitochondr 99.7 5.7E-13 1.2E-17 149.6 45.9 336 247-603 129-538 (615)
19 KOG4422 Uncharacterized conser 99.7 1.6E-13 3.4E-18 135.6 35.1 310 278-604 206-553 (625)
20 PRK14574 hmsH outer membrane p 99.7 3.9E-12 8.5E-17 143.5 48.6 384 212-603 36-480 (822)
21 PRK10049 pgaA outer membrane p 99.7 1.6E-12 3.5E-17 148.9 46.4 379 206-603 10-423 (765)
22 KOG4422 Uncharacterized conser 99.7 5.3E-12 1.1E-16 125.0 40.9 405 197-619 136-607 (625)
23 KOG4626 O-linked N-acetylgluco 99.6 2.8E-13 6E-18 139.4 30.3 286 258-567 197-485 (966)
24 PRK14574 hmsH outer membrane p 99.6 1.8E-10 4E-15 130.1 47.9 357 226-603 85-514 (822)
25 PRK10747 putative protoheme IX 99.5 1.4E-10 3E-15 122.8 38.5 282 258-564 97-387 (398)
26 KOG2076 RNA polymerase III tra 99.5 1.5E-10 3.4E-15 124.8 37.0 338 246-600 140-510 (895)
27 TIGR00540 hemY_coli hemY prote 99.5 2.3E-10 5E-15 121.8 38.3 135 246-380 83-219 (409)
28 PRK09782 bacteriophage N4 rece 99.5 1.8E-09 3.9E-14 124.7 45.6 320 259-603 356-707 (987)
29 PRK10747 putative protoheme IX 99.5 3.9E-10 8.4E-15 119.4 36.3 288 292-599 97-387 (398)
30 PF13429 TPR_15: Tetratricopep 99.5 5.1E-13 1.1E-17 134.9 13.1 256 321-598 15-273 (280)
31 PF13429 TPR_15: Tetratricopep 99.4 7.8E-13 1.7E-17 133.5 13.3 260 250-530 13-275 (280)
32 PRK09782 bacteriophage N4 rece 99.4 9E-09 2E-13 118.9 47.7 333 244-601 375-739 (987)
33 COG2956 Predicted N-acetylgluc 99.4 5E-10 1.1E-14 107.7 30.8 301 246-567 37-347 (389)
34 TIGR00540 hemY_coli hemY prote 99.4 9.1E-10 2E-14 117.2 35.5 292 290-599 95-396 (409)
35 COG3071 HemY Uncharacterized e 99.4 5.5E-09 1.2E-13 103.8 37.6 297 247-566 84-389 (400)
36 KOG2002 TPR-containing nuclear 99.4 3.2E-09 7E-14 115.6 37.8 352 248-603 310-746 (1018)
37 KOG1126 DNA-binding cell divis 99.4 3.9E-10 8.5E-15 118.3 28.9 284 260-568 334-621 (638)
38 KOG2003 TPR repeat-containing 99.4 1.1E-09 2.5E-14 109.1 30.3 162 432-599 557-719 (840)
39 COG2956 Predicted N-acetylgluc 99.4 2.5E-09 5.5E-14 103.0 30.7 292 291-600 47-345 (389)
40 KOG2076 RNA polymerase III tra 99.4 4.9E-09 1.1E-13 113.5 36.4 371 226-601 156-554 (895)
41 KOG4318 Bicoid mRNA stability 99.3 2E-10 4.2E-15 123.3 23.4 255 345-605 201-597 (1088)
42 KOG1155 Anaphase-promoting com 99.3 2.3E-08 5E-13 100.8 36.5 293 286-602 234-536 (559)
43 COG3071 HemY Uncharacterized e 99.3 1.8E-08 3.9E-13 100.1 33.7 292 291-600 96-388 (400)
44 KOG1155 Anaphase-promoting com 99.3 3.3E-08 7.2E-13 99.6 34.8 165 433-601 330-494 (559)
45 KOG2003 TPR repeat-containing 99.3 7.9E-09 1.7E-13 103.3 29.9 369 228-603 220-690 (840)
46 KOG1126 DNA-binding cell divis 99.3 2E-09 4.4E-14 113.1 26.2 280 294-602 334-620 (638)
47 TIGR02521 type_IV_pilW type IV 99.2 1.5E-08 3.3E-13 98.3 26.9 90 474-565 141-230 (234)
48 TIGR02521 type_IV_pilW type IV 99.2 2.1E-08 4.5E-13 97.3 26.7 86 443-530 145-230 (234)
49 KOG4318 Bicoid mRNA stability 99.2 7.2E-10 1.6E-14 119.1 17.2 82 466-550 202-283 (1088)
50 KOG0495 HAT repeat protein [RN 99.2 5.3E-07 1.1E-11 94.5 37.5 359 238-601 472-879 (913)
51 PRK12370 invasion protein regu 99.2 3.7E-08 8E-13 109.0 31.3 215 329-567 319-535 (553)
52 PF13041 PPR_2: PPR repeat fam 99.2 6.8E-11 1.5E-15 85.0 6.3 49 346-394 1-49 (50)
53 KOG1915 Cell cycle control pro 99.2 2.6E-06 5.7E-11 86.3 40.3 369 227-604 91-538 (677)
54 KOG2002 TPR-containing nuclear 99.2 1.5E-06 3.1E-11 95.4 41.5 364 226-600 181-591 (1018)
55 PRK12370 invasion protein regu 99.1 2.3E-08 4.9E-13 110.7 28.5 252 329-604 276-537 (553)
56 PF13041 PPR_2: PPR repeat fam 99.1 1.5E-10 3.3E-15 83.2 6.8 50 381-430 1-50 (50)
57 PF12569 NARP1: NMDA receptor- 99.1 1.9E-07 4.1E-12 100.3 32.6 296 282-601 7-333 (517)
58 PF12569 NARP1: NMDA receptor- 99.1 5.7E-07 1.2E-11 96.7 35.2 297 249-566 8-333 (517)
59 KOG1129 TPR repeat-containing 99.1 1.4E-08 3.1E-13 97.8 20.0 236 311-567 220-458 (478)
60 KOG1840 Kinesin light chain [C 99.1 2.1E-07 4.5E-12 98.9 30.7 243 347-600 198-477 (508)
61 KOG0495 HAT repeat protein [RN 99.1 3.3E-06 7.2E-11 88.7 38.1 346 228-598 425-778 (913)
62 KOG0547 Translocase of outer m 99.1 8.9E-07 1.9E-11 90.1 32.0 351 226-600 132-564 (606)
63 KOG1915 Cell cycle control pro 99.0 7.2E-06 1.6E-10 83.2 37.7 344 228-582 160-549 (677)
64 KOG1129 TPR repeat-containing 99.0 1.1E-07 2.4E-12 91.8 21.3 232 281-532 225-458 (478)
65 KOG1173 Anaphase-promoting com 98.9 2E-06 4.2E-11 89.3 29.6 285 240-548 239-532 (611)
66 KOG0547 Translocase of outer m 98.9 2.9E-06 6.3E-11 86.5 29.1 342 245-603 115-492 (606)
67 KOG1840 Kinesin light chain [C 98.9 7.9E-07 1.7E-11 94.6 26.0 199 353-565 246-477 (508)
68 KOG1156 N-terminal acetyltrans 98.9 7E-05 1.5E-09 79.2 39.4 142 198-342 30-171 (700)
69 KOG2047 mRNA splicing factor [ 98.9 8.9E-05 1.9E-09 78.2 39.8 348 247-600 140-613 (835)
70 KOG1174 Anaphase-promoting com 98.9 9.3E-05 2E-09 74.2 38.0 294 287-603 204-501 (564)
71 cd05804 StaR_like StaR_like; a 98.8 2.4E-05 5.2E-10 81.8 35.3 202 245-461 6-214 (355)
72 KOG3785 Uncharacterized conser 98.8 8.8E-06 1.9E-10 79.7 28.8 91 509-603 399-491 (557)
73 KOG1173 Anaphase-promoting com 98.8 8.3E-06 1.8E-10 84.7 29.8 281 278-583 243-532 (611)
74 KOG1174 Anaphase-promoting com 98.8 3.6E-05 7.8E-10 77.1 32.5 285 227-532 214-500 (564)
75 cd05804 StaR_like StaR_like; a 98.8 2.4E-05 5.1E-10 81.9 33.9 303 279-601 6-335 (355)
76 KOG1156 N-terminal acetyltrans 98.8 0.00013 2.7E-09 77.4 37.9 329 254-604 50-470 (700)
77 PRK11189 lipoprotein NlpI; Pro 98.8 9.8E-06 2.1E-10 82.3 29.2 117 259-376 40-160 (296)
78 KOG2376 Signal recognition par 98.7 5.4E-05 1.2E-09 79.2 32.8 371 218-600 19-518 (652)
79 PRK11189 lipoprotein NlpI; Pro 98.7 1.3E-05 2.9E-10 81.3 27.4 203 245-463 64-266 (296)
80 KOG4162 Predicted calmodulin-b 98.6 0.00012 2.5E-09 79.1 32.5 354 243-600 321-781 (799)
81 COG3063 PilF Tfp pilus assembl 98.6 3.5E-05 7.6E-10 71.7 24.3 192 285-494 41-233 (250)
82 PF04733 Coatomer_E: Coatomer 98.6 1.7E-06 3.6E-11 86.9 17.3 123 439-566 137-264 (290)
83 COG3063 PilF Tfp pilus assembl 98.6 4.4E-05 9.6E-10 71.1 24.3 196 352-566 39-235 (250)
84 KOG4340 Uncharacterized conser 98.6 3.7E-05 7.9E-10 73.8 23.9 276 244-528 43-335 (459)
85 KOG4340 Uncharacterized conser 98.5 1.5E-05 3.3E-10 76.4 20.3 326 248-600 13-373 (459)
86 PF04733 Coatomer_E: Coatomer 98.5 5.5E-06 1.2E-10 83.2 18.4 253 253-532 9-265 (290)
87 KOG2047 mRNA splicing factor [ 98.5 0.0014 3E-08 69.5 36.0 305 245-563 248-611 (835)
88 KOG1914 mRNA cleavage and poly 98.5 0.0022 4.7E-08 66.9 35.6 116 484-602 347-464 (656)
89 PF12854 PPR_1: PPR repeat 98.4 2.6E-07 5.7E-12 59.8 4.1 32 378-409 2-33 (34)
90 KOG0985 Vesicle coat protein c 98.4 0.00048 1E-08 76.1 30.7 163 243-419 982-1169(1666)
91 PRK04841 transcriptional regul 98.4 0.001 2.2E-08 78.8 37.1 333 257-601 386-759 (903)
92 KOG3785 Uncharacterized conser 98.4 0.00082 1.8E-08 66.3 29.2 314 293-620 165-555 (557)
93 PF12854 PPR_1: PPR repeat 98.4 3.4E-07 7.4E-12 59.3 4.0 32 533-564 2-33 (34)
94 KOG1070 rRNA processing protei 98.4 0.00017 3.7E-09 82.2 26.4 224 313-555 1457-1688(1710)
95 PRK04841 transcriptional regul 98.4 0.0009 1.9E-08 79.3 34.7 305 287-601 382-719 (903)
96 KOG1070 rRNA processing protei 98.4 0.00027 5.8E-09 80.7 27.6 239 338-595 1448-1693(1710)
97 PLN02789 farnesyltranstransfer 98.3 0.00046 1E-08 70.3 27.1 215 247-480 39-267 (320)
98 KOG2053 Mitochondrial inherita 98.3 0.0042 9.1E-08 68.5 35.0 211 198-413 32-256 (932)
99 KOG1125 TPR repeat-containing 98.3 0.0001 2.2E-09 77.1 21.6 263 322-597 293-566 (579)
100 TIGR03302 OM_YfiO outer membra 98.3 9.6E-05 2.1E-09 72.3 20.6 171 242-412 30-232 (235)
101 KOG1125 TPR repeat-containing 98.3 0.00014 3E-09 76.3 21.3 120 438-560 435-564 (579)
102 KOG2376 Signal recognition par 98.2 0.0071 1.5E-07 63.9 33.1 222 248-498 15-254 (652)
103 PRK14720 transcript cleavage f 98.2 0.00064 1.4E-08 77.1 27.7 241 241-549 26-268 (906)
104 PLN02789 farnesyltranstransfer 98.2 0.00095 2.1E-08 68.0 26.5 213 283-515 41-267 (320)
105 KOG0985 Vesicle coat protein c 98.2 0.006 1.3E-07 67.9 33.0 311 244-598 951-1304(1666)
106 TIGR03302 OM_YfiO outer membra 98.2 0.00039 8.5E-09 68.0 22.6 58 509-566 172-231 (235)
107 KOG3617 WD40 and TPR repeat-co 98.2 0.00031 6.7E-09 76.0 22.4 133 432-596 911-1058(1416)
108 KOG0548 Molecular co-chaperone 98.2 0.0057 1.2E-07 63.9 30.6 351 226-603 19-456 (539)
109 KOG0624 dsRNA-activated protei 98.2 0.009 1.9E-07 59.0 31.5 301 246-568 39-371 (504)
110 COG5010 TadD Flp pilus assembl 98.2 0.00016 3.4E-09 68.8 17.8 158 249-408 70-227 (257)
111 KOG1128 Uncharacterized conser 98.2 0.0012 2.7E-08 71.1 26.3 235 280-550 399-635 (777)
112 KOG4162 Predicted calmodulin-b 98.2 0.021 4.5E-07 62.3 35.2 343 277-623 321-769 (799)
113 KOG3081 Vesicle coat complex C 98.2 0.0014 3E-08 62.5 23.4 171 370-566 95-270 (299)
114 KOG3616 Selective LIM binding 98.1 0.0019 4E-08 69.3 26.3 337 251-627 563-937 (1636)
115 KOG1128 Uncharacterized conser 98.1 0.00017 3.7E-09 77.4 18.5 210 320-565 404-614 (777)
116 PRK15179 Vi polysaccharide bio 98.1 0.00029 6.2E-09 79.0 21.4 149 240-390 81-229 (694)
117 PRK10370 formate-dependent nit 98.1 0.00015 3.3E-09 68.7 15.9 119 258-377 52-173 (198)
118 KOG3617 WD40 and TPR repeat-co 98.1 0.004 8.7E-08 67.8 27.7 222 226-495 745-994 (1416)
119 COG5010 TadD Flp pilus assembl 98.0 0.00091 2E-08 63.8 20.1 128 283-412 70-197 (257)
120 PRK14720 transcript cleavage f 98.0 0.0016 3.5E-08 73.9 25.6 238 278-584 30-268 (906)
121 KOG3616 Selective LIM binding 98.0 0.0016 3.5E-08 69.7 23.6 192 355-595 739-930 (1636)
122 PRK10370 formate-dependent nit 98.0 0.0011 2.3E-08 62.9 20.7 119 447-568 53-174 (198)
123 KOG0548 Molecular co-chaperone 98.0 0.011 2.5E-07 61.8 29.0 339 253-603 10-422 (539)
124 KOG3081 Vesicle coat complex C 98.0 0.0063 1.4E-07 58.2 24.6 252 254-532 17-271 (299)
125 COG4783 Putative Zn-dependent 98.0 0.0023 5E-08 66.2 23.1 141 356-532 314-454 (484)
126 PRK15359 type III secretion sy 97.9 0.00096 2.1E-08 59.7 17.6 95 471-567 27-121 (144)
127 TIGR02552 LcrH_SycD type III s 97.9 0.00033 7.2E-09 61.9 14.5 95 281-376 19-113 (135)
128 PRK15359 type III secretion sy 97.9 0.00043 9.3E-09 62.0 15.2 106 248-354 27-132 (144)
129 KOG1127 TPR repeat-containing 97.9 0.017 3.7E-07 64.6 29.2 130 245-375 526-657 (1238)
130 PRK15179 Vi polysaccharide bio 97.9 0.0018 3.9E-08 72.7 22.3 154 270-426 77-230 (694)
131 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00041 8.8E-09 72.2 15.7 125 435-565 171-295 (395)
132 TIGR00756 PPR pentatricopeptid 97.8 3.1E-05 6.7E-10 50.4 4.6 33 350-382 2-34 (35)
133 KOG1914 mRNA cleavage and poly 97.8 0.065 1.4E-06 56.3 38.0 389 208-601 17-500 (656)
134 COG4783 Putative Zn-dependent 97.8 0.0064 1.4E-07 63.0 22.8 239 216-497 210-454 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00054 1.2E-08 71.3 15.4 125 247-375 171-295 (395)
136 KOG3060 Uncharacterized conser 97.8 0.014 3E-07 55.5 22.8 151 294-461 27-182 (289)
137 PF10037 MRP-S27: Mitochondria 97.8 0.00039 8.4E-09 72.6 13.4 124 463-586 61-186 (429)
138 TIGR00756 PPR pentatricopeptid 97.8 5.1E-05 1.1E-09 49.3 4.6 33 540-572 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 97.8 4.7E-05 1E-09 49.3 4.3 33 349-381 2-34 (34)
140 TIGR02552 LcrH_SycD type III s 97.7 0.0013 2.8E-08 58.0 14.7 116 301-420 5-120 (135)
141 KOG2053 Mitochondrial inherita 97.7 0.15 3.2E-06 56.8 32.2 227 227-498 27-256 (932)
142 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.4E-09 47.5 4.5 32 540-571 3-34 (34)
143 PF09976 TPR_21: Tetratricopep 97.6 0.0026 5.7E-08 57.0 15.0 124 471-598 15-143 (145)
144 PF10037 MRP-S27: Mitochondria 97.6 0.0018 3.8E-08 67.8 15.4 116 311-426 63-181 (429)
145 PF09976 TPR_21: Tetratricopep 97.6 0.0053 1.2E-07 55.0 16.2 126 246-373 13-143 (145)
146 PF08579 RPM2: Mitochondrial r 97.5 0.0013 2.8E-08 54.4 10.7 77 439-515 31-116 (120)
147 PF05843 Suf: Suppressor of fo 97.5 0.0016 3.4E-08 65.5 13.2 83 328-411 50-135 (280)
148 PF05843 Suf: Suppressor of fo 97.4 0.0033 7.1E-08 63.2 14.6 131 246-377 2-136 (280)
149 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4.1E-09 45.2 3.6 29 350-378 2-30 (31)
150 cd00189 TPR Tetratricopeptide 97.4 0.003 6.5E-08 50.5 11.5 89 286-375 7-95 (100)
151 PF04840 Vps16_C: Vps16, C-ter 97.4 0.06 1.3E-06 54.8 23.0 111 470-600 179-289 (319)
152 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.4E-08 52.8 10.4 41 475-515 32-73 (120)
153 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0051 1.1E-07 52.5 13.2 95 249-343 6-105 (119)
154 PF01535 PPR: PPR repeat; Int 97.3 0.0002 4.3E-09 45.1 3.1 29 540-568 2-30 (31)
155 cd00189 TPR Tetratricopeptide 97.3 0.0033 7.1E-08 50.3 11.2 90 320-410 6-95 (100)
156 PF14938 SNAP: Soluble NSF att 97.3 0.043 9.2E-07 55.3 21.4 123 477-600 123-264 (282)
157 KOG3060 Uncharacterized conser 97.3 0.084 1.8E-06 50.4 20.9 169 241-412 47-220 (289)
158 PRK10866 outer membrane biogen 97.3 0.14 3.1E-06 50.1 23.9 55 323-377 41-98 (243)
159 KOG1127 TPR repeat-containing 97.3 0.24 5.3E-06 55.8 27.4 149 261-411 474-624 (1238)
160 PF06239 ECSIT: Evolutionarily 97.2 0.0051 1.1E-07 57.4 12.1 36 448-483 118-153 (228)
161 KOG0624 dsRNA-activated protei 97.2 0.26 5.7E-06 49.0 33.5 206 321-533 162-371 (504)
162 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.013 2.8E-07 50.0 13.2 96 317-412 5-105 (119)
163 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.45 9.7E-06 49.2 32.1 132 468-603 397-532 (660)
164 PF06239 ECSIT: Evolutionarily 97.1 0.0075 1.6E-07 56.3 11.7 87 467-553 46-153 (228)
165 PF12895 Apc3: Anaphase-promot 97.0 0.0016 3.4E-08 52.3 5.5 79 482-562 3-82 (84)
166 PF12895 Apc3: Anaphase-promot 97.0 0.0019 4.2E-08 51.7 5.9 81 516-598 2-83 (84)
167 PRK02603 photosystem I assembl 96.9 0.054 1.2E-06 50.0 16.3 83 281-363 37-121 (172)
168 KOG2041 WD40 repeat protein [G 96.9 0.84 1.8E-05 49.6 27.7 228 344-601 848-1085(1189)
169 PRK10866 outer membrane biogen 96.9 0.25 5.4E-06 48.4 21.3 58 543-600 180-239 (243)
170 PF07079 DUF1347: Protein of u 96.9 0.7 1.5E-05 47.9 33.4 360 227-603 24-525 (549)
171 PLN03088 SGT1, suppressor of 96.9 0.022 4.8E-07 59.3 14.7 86 290-376 13-98 (356)
172 KOG2280 Vacuolar assembly/sort 96.9 1 2.2E-05 49.6 28.0 375 175-600 402-797 (829)
173 PLN03088 SGT1, suppressor of 96.9 0.027 5.9E-07 58.6 15.1 100 252-352 9-108 (356)
174 PRK02603 photosystem I assembl 96.8 0.051 1.1E-06 50.2 15.3 129 434-588 36-166 (172)
175 PF14938 SNAP: Soluble NSF att 96.8 0.036 7.7E-07 55.8 15.2 165 246-412 36-225 (282)
176 CHL00033 ycf3 photosystem I as 96.8 0.023 5.1E-07 52.2 12.7 96 468-564 35-139 (168)
177 KOG2796 Uncharacterized conser 96.8 0.14 3E-06 49.1 17.4 143 245-389 177-325 (366)
178 PRK15363 pathogenicity island 96.8 0.088 1.9E-06 47.0 15.1 87 478-566 45-131 (157)
179 CHL00033 ycf3 photosystem I as 96.7 0.034 7.4E-07 51.1 12.9 92 281-372 37-137 (168)
180 PRK15363 pathogenicity island 96.7 0.079 1.7E-06 47.3 14.2 92 250-342 40-131 (157)
181 COG5107 RNA14 Pre-mRNA 3'-end 96.6 1.1 2.4E-05 46.4 28.6 321 268-597 31-490 (660)
182 KOG1130 Predicted G-alpha GTPa 96.6 0.066 1.4E-06 54.3 14.5 58 245-302 15-78 (639)
183 PF13525 YfiO: Outer membrane 96.5 0.7 1.5E-05 43.9 21.0 56 322-377 13-71 (203)
184 PF12688 TPR_5: Tetratrico pep 96.5 0.12 2.6E-06 44.3 13.9 86 288-373 10-100 (120)
185 PF14559 TPR_19: Tetratricopep 96.5 0.0095 2.1E-07 45.3 6.5 52 257-308 3-54 (68)
186 PRK10153 DNA-binding transcrip 96.5 0.13 2.8E-06 56.2 17.4 67 344-412 416-482 (517)
187 COG4700 Uncharacterized protei 96.4 0.72 1.6E-05 42.1 19.4 156 464-624 85-247 (251)
188 PF14559 TPR_19: Tetratricopep 96.4 0.0098 2.1E-07 45.2 6.2 50 327-376 4-53 (68)
189 PRK10153 DNA-binding transcrip 96.4 0.14 3.1E-06 55.8 17.4 144 240-386 332-489 (517)
190 KOG1538 Uncharacterized conser 96.4 1.2 2.5E-05 48.2 22.6 88 469-567 748-846 (1081)
191 COG4235 Cytochrome c biogenesi 96.3 0.15 3.2E-06 50.2 14.9 116 261-377 138-256 (287)
192 KOG2796 Uncharacterized conser 96.3 0.097 2.1E-06 50.1 12.9 134 434-568 178-316 (366)
193 PF13525 YfiO: Outer membrane 96.1 0.53 1.1E-05 44.8 17.5 171 251-452 11-197 (203)
194 PF13432 TPR_16: Tetratricopep 96.1 0.027 5.8E-07 42.4 6.9 55 322-376 5-59 (65)
195 KOG0553 TPR repeat-containing 96.1 0.083 1.8E-06 51.7 11.6 102 441-546 89-190 (304)
196 KOG0550 Molecular chaperone (D 96.0 1.4 3.1E-05 45.2 20.4 52 480-531 261-315 (486)
197 KOG1130 Predicted G-alpha GTPa 96.0 0.42 9.1E-06 48.8 16.6 131 435-565 197-342 (639)
198 COG3898 Uncharacterized membra 96.0 2.2 4.8E-05 43.5 34.4 321 217-571 61-396 (531)
199 PF13432 TPR_16: Tetratricopep 96.0 0.028 6.1E-07 42.3 6.6 56 253-308 5-60 (65)
200 PF13414 TPR_11: TPR repeat; P 95.9 0.043 9.3E-07 41.8 7.6 60 505-565 5-65 (69)
201 PF12688 TPR_5: Tetratrico pep 95.9 0.48 1E-05 40.6 14.7 54 478-531 11-66 (120)
202 PRK10803 tol-pal system protei 95.9 0.2 4.4E-06 49.6 13.9 98 246-343 144-246 (263)
203 PF03704 BTAD: Bacterial trans 95.9 0.048 1E-06 48.8 8.8 73 245-317 62-139 (146)
204 PF13414 TPR_11: TPR repeat; P 95.8 0.041 9E-07 41.9 7.0 63 245-307 3-66 (69)
205 COG4235 Cytochrome c biogenesi 95.7 0.63 1.4E-05 45.9 15.9 100 467-568 155-257 (287)
206 PF09205 DUF1955: Domain of un 95.6 1 2.2E-05 38.7 14.8 135 446-605 15-152 (161)
207 PF03704 BTAD: Bacterial trans 95.6 0.12 2.6E-06 46.2 10.1 69 317-385 65-138 (146)
208 PF04840 Vps16_C: Vps16, C-ter 95.5 3.3 7.2E-05 42.2 24.4 106 439-564 183-288 (319)
209 KOG0553 TPR repeat-containing 95.5 0.58 1.3E-05 46.0 14.9 88 255-343 91-178 (304)
210 PF12921 ATP13: Mitochondrial 95.4 0.21 4.6E-06 43.3 10.6 50 499-548 48-98 (126)
211 PRK10803 tol-pal system protei 95.4 0.33 7.1E-06 48.1 13.2 60 281-342 145-208 (263)
212 COG4700 Uncharacterized protei 95.3 1.7 3.7E-05 39.7 15.9 131 277-409 87-219 (251)
213 KOG0550 Molecular chaperone (D 95.2 4.4 9.5E-05 41.8 24.4 178 346-532 166-350 (486)
214 COG3898 Uncharacterized membra 95.2 4.2 9.1E-05 41.6 25.3 262 242-533 115-393 (531)
215 KOG2041 WD40 repeat protein [G 95.2 6.3 0.00014 43.3 24.0 228 311-567 689-952 (1189)
216 PF13281 DUF4071: Domain of un 95.1 3.8 8.2E-05 42.4 20.3 32 466-497 303-334 (374)
217 PF12921 ATP13: Mitochondrial 95.1 0.47 1E-05 41.1 11.9 57 532-588 46-103 (126)
218 PF13424 TPR_12: Tetratricopep 95.0 0.073 1.6E-06 41.7 6.2 60 505-564 7-72 (78)
219 PF13371 TPR_9: Tetratricopept 95.0 0.15 3.2E-06 39.2 7.9 57 253-309 3-59 (73)
220 PF10300 DUF3808: Protein of u 95.0 2.5 5.3E-05 45.9 19.8 202 413-621 172-401 (468)
221 smart00299 CLH Clathrin heavy 95.0 1.8 3.8E-05 38.2 15.7 42 250-291 12-53 (140)
222 KOG1920 IkappaB kinase complex 94.9 10 0.00022 44.4 27.4 106 441-564 947-1052(1265)
223 PF09205 DUF1955: Domain of un 94.9 2.2 4.7E-05 36.8 14.6 68 467-535 85-152 (161)
224 KOG1920 IkappaB kinase complex 94.9 11 0.00023 44.3 25.6 90 465-566 932-1027(1265)
225 KOG2114 Vacuolar assembly/sort 94.7 3 6.4E-05 46.7 19.1 74 507-588 709-786 (933)
226 PF13281 DUF4071: Domain of un 94.6 6.5 0.00014 40.8 24.0 176 437-614 145-348 (374)
227 PF13371 TPR_9: Tetratricopept 94.6 0.21 4.5E-06 38.3 7.7 54 323-376 4-57 (73)
228 KOG3941 Intermediate in Toll s 94.5 0.62 1.3E-05 45.3 11.9 37 448-484 138-174 (406)
229 KOG1538 Uncharacterized conser 94.5 3.3 7.1E-05 44.9 18.2 216 351-599 601-830 (1081)
230 PF04053 Coatomer_WDAD: Coatom 94.4 0.88 1.9E-05 48.6 14.1 132 256-413 272-403 (443)
231 PF08631 SPO22: Meiosis protei 94.3 6.4 0.00014 39.4 26.5 160 256-418 4-192 (278)
232 smart00299 CLH Clathrin heavy 94.3 2.8 6E-05 36.9 15.4 124 438-584 12-136 (140)
233 PRK15331 chaperone protein Sic 94.3 3.1 6.8E-05 37.5 15.2 86 479-566 48-133 (165)
234 PF13424 TPR_12: Tetratricopep 94.3 0.12 2.7E-06 40.3 5.8 63 538-600 5-73 (78)
235 COG4105 ComL DNA uptake lipopr 94.2 5.8 0.00013 38.4 23.9 80 314-394 35-117 (254)
236 PF10300 DUF3808: Protein of u 94.2 3.5 7.7E-05 44.6 18.6 169 386-566 191-375 (468)
237 COG4105 ComL DNA uptake lipopr 94.0 6.4 0.00014 38.2 19.7 185 245-462 35-233 (254)
238 PF13170 DUF4003: Protein of u 93.9 7.9 0.00017 39.1 20.5 134 364-510 78-224 (297)
239 KOG3941 Intermediate in Toll s 93.8 0.77 1.7E-05 44.6 10.9 88 467-554 66-174 (406)
240 KOG1585 Protein required for f 93.8 4.7 0.0001 38.6 15.8 212 245-491 31-250 (308)
241 KOG0543 FKBP-type peptidyl-pro 93.6 0.98 2.1E-05 46.4 11.9 96 314-411 257-354 (397)
242 COG3118 Thioredoxin domain-con 93.4 9 0.0002 37.9 17.6 52 325-376 145-196 (304)
243 PF13170 DUF4003: Protein of u 93.3 4 8.6E-05 41.2 15.9 153 449-603 78-251 (297)
244 PF07079 DUF1347: Protein of u 93.3 12 0.00026 39.2 24.0 137 255-395 16-179 (549)
245 PF08631 SPO22: Meiosis protei 93.3 9.9 0.00021 38.0 26.5 162 434-598 85-271 (278)
246 PLN03098 LPA1 LOW PSII ACCUMUL 93.2 1.2 2.6E-05 46.8 12.0 64 467-532 74-141 (453)
247 PRK15331 chaperone protein Sic 93.1 0.7 1.5E-05 41.6 9.0 85 257-342 49-133 (165)
248 KOG2066 Vacuolar assembly/sort 93.1 16 0.00035 40.9 20.7 162 286-461 363-533 (846)
249 PF13512 TPR_18: Tetratricopep 93.1 2 4.4E-05 37.7 11.6 79 246-325 12-93 (142)
250 PLN03098 LPA1 LOW PSII ACCUMUL 93.1 2.6 5.7E-05 44.3 14.4 65 244-308 74-141 (453)
251 KOG1585 Protein required for f 92.9 6.5 0.00014 37.7 15.2 56 505-561 192-250 (308)
252 PF04053 Coatomer_WDAD: Coatom 92.8 2.4 5.2E-05 45.4 14.1 142 435-612 297-438 (443)
253 COG3118 Thioredoxin domain-con 92.7 5.8 0.00012 39.3 15.2 145 252-398 141-287 (304)
254 KOG2610 Uncharacterized conser 92.5 2.8 6.1E-05 41.9 12.8 150 446-598 116-272 (491)
255 KOG0543 FKBP-type peptidyl-pro 92.4 2.6 5.6E-05 43.4 12.9 124 441-566 216-354 (397)
256 PRK11906 transcriptional regul 92.2 7 0.00015 41.3 16.1 162 448-612 273-448 (458)
257 KOG1258 mRNA processing protei 92.2 20 0.00044 38.9 31.5 341 243-593 43-420 (577)
258 PF04184 ST7: ST7 protein; In 92.1 15 0.00032 39.2 18.2 56 509-564 265-321 (539)
259 KOG2114 Vacuolar assembly/sort 92.0 2 4.4E-05 48.0 12.4 154 245-409 283-457 (933)
260 COG3629 DnrI DNA-binding trans 91.8 1.8 3.8E-05 42.9 10.8 78 504-582 154-236 (280)
261 COG1729 Uncharacterized protei 91.7 4 8.6E-05 39.9 12.9 103 246-349 143-250 (262)
262 COG3629 DnrI DNA-binding trans 91.6 1.9 4.2E-05 42.6 10.8 79 245-323 153-236 (280)
263 KOG0276 Vesicle coat complex C 91.3 2.9 6.2E-05 45.1 12.1 155 437-624 618-782 (794)
264 PF07035 Mic1: Colon cancer-as 91.1 12 0.00025 34.1 15.4 135 453-601 14-148 (167)
265 PRK11906 transcriptional regul 90.4 12 0.00026 39.6 15.7 146 261-408 274-432 (458)
266 PF13512 TPR_18: Tetratricopep 90.4 5.9 0.00013 34.9 11.5 72 479-550 21-94 (142)
267 PF02259 FAT: FAT domain; Int 90.3 24 0.00052 36.3 24.4 65 502-566 145-212 (352)
268 COG1729 Uncharacterized protei 90.2 7.1 0.00015 38.2 13.0 97 470-567 144-244 (262)
269 KOG2280 Vacuolar assembly/sort 90.0 37 0.00079 38.0 31.6 93 498-600 679-771 (829)
270 KOG2610 Uncharacterized conser 89.9 7.5 0.00016 39.0 12.9 154 256-409 114-273 (491)
271 COG4649 Uncharacterized protei 89.8 16 0.00034 33.3 14.0 132 245-377 59-196 (221)
272 PF07035 Mic1: Colon cancer-as 89.6 16 0.00035 33.2 14.6 113 488-611 14-127 (167)
273 PF13428 TPR_14: Tetratricopep 89.3 1.2 2.6E-05 30.4 5.2 39 247-285 3-41 (44)
274 PF04184 ST7: ST7 protein; In 89.1 32 0.0007 36.7 17.5 59 473-531 264-323 (539)
275 KOG1941 Acetylcholine receptor 88.6 15 0.00032 37.4 14.0 124 474-597 128-270 (518)
276 PF02259 FAT: FAT domain; Int 88.3 33 0.00072 35.2 25.9 62 435-496 148-212 (352)
277 COG0457 NrfG FOG: TPR repeat [ 88.1 21 0.00047 32.8 30.0 203 348-567 59-265 (291)
278 PF13428 TPR_14: Tetratricopep 88.0 1.2 2.7E-05 30.3 4.6 20 322-341 9-28 (44)
279 KOG1941 Acetylcholine receptor 87.9 16 0.00035 37.1 13.8 171 350-530 85-273 (518)
280 PF10602 RPN7: 26S proteasome 87.7 6.2 0.00013 36.5 10.5 92 317-410 39-140 (177)
281 KOG4570 Uncharacterized conser 87.6 7.2 0.00016 38.8 11.0 105 462-568 58-165 (418)
282 PF02284 COX5A: Cytochrome c o 87.5 2.8 6.1E-05 34.3 6.8 59 297-355 28-86 (108)
283 cd00923 Cyt_c_Oxidase_Va Cytoc 87.5 2.8 6.1E-05 33.9 6.8 59 297-355 25-83 (103)
284 PF11207 DUF2989: Protein of u 87.4 9.8 0.00021 35.6 11.4 71 262-333 123-197 (203)
285 KOG4555 TPR repeat-containing 87.4 15 0.00032 31.8 11.3 90 477-568 52-145 (175)
286 KOG4555 TPR repeat-containing 87.1 17 0.00036 31.5 11.5 90 323-413 52-145 (175)
287 PF13929 mRNA_stabil: mRNA sta 87.1 34 0.00073 34.0 18.4 135 448-582 143-287 (292)
288 PF10602 RPN7: 26S proteasome 86.9 9.1 0.0002 35.4 11.1 94 470-565 38-140 (177)
289 PF13929 mRNA_stabil: mRNA sta 86.1 26 0.00057 34.8 14.1 135 258-392 141-287 (292)
290 PF10345 Cohesin_load: Cohesin 85.7 68 0.0015 36.2 29.0 182 228-410 40-252 (608)
291 PF04097 Nic96: Nup93/Nic96; 85.4 70 0.0015 36.1 20.7 64 245-309 112-182 (613)
292 KOG2034 Vacuolar sorting prote 85.3 76 0.0016 36.4 23.9 35 519-553 609-643 (911)
293 COG0457 NrfG FOG: TPR repeat [ 84.9 31 0.00068 31.6 30.8 228 361-604 36-267 (291)
294 PF09613 HrpB1_HrpK: Bacterial 84.6 30 0.00065 31.2 13.6 53 325-377 21-73 (160)
295 KOG1550 Extracellular protein 83.8 77 0.0017 35.2 23.7 154 255-413 259-427 (552)
296 PF13176 TPR_7: Tetratricopept 83.0 2.8 6.2E-05 27.0 4.2 23 541-563 2-24 (36)
297 PF13176 TPR_7: Tetratricopept 82.8 2.9 6.3E-05 27.0 4.2 26 505-530 1-26 (36)
298 COG4455 ImpE Protein of avirul 81.8 8 0.00017 36.5 8.1 77 247-323 3-81 (273)
299 KOG4570 Uncharacterized conser 81.5 5.3 0.00012 39.7 7.1 102 240-342 59-163 (418)
300 KOG4234 TPR repeat-containing 80.1 17 0.00036 34.0 9.4 90 477-568 104-198 (271)
301 KOG1464 COP9 signalosome, subu 79.6 65 0.0014 31.6 17.4 59 438-496 150-219 (440)
302 PRK09687 putative lyase; Provi 78.5 76 0.0017 31.7 31.9 130 438-583 147-277 (280)
303 PF11207 DUF2989: Protein of u 78.2 27 0.00059 32.7 10.4 79 478-558 117-198 (203)
304 KOG2582 COP9 signalosome, subu 78.0 87 0.0019 32.1 19.1 237 242-497 72-345 (422)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 77.9 18 0.00038 29.5 7.8 43 488-530 27-69 (103)
306 PRK15180 Vi polysaccharide bio 77.8 53 0.0011 34.8 13.2 123 286-411 296-419 (831)
307 PF07575 Nucleopor_Nup85: Nup8 77.8 1.1E+02 0.0025 34.1 17.4 77 453-531 390-466 (566)
308 PF02284 COX5A: Cytochrome c o 77.3 33 0.00072 28.3 9.2 47 486-532 28-74 (108)
309 KOG2063 Vacuolar assembly/sort 77.0 1.5E+02 0.0034 34.5 18.4 60 248-307 310-374 (877)
310 PF13762 MNE1: Mitochondrial s 76.6 46 0.001 29.5 10.9 52 537-588 78-130 (145)
311 TIGR02561 HrpB1_HrpK type III 76.4 56 0.0012 29.1 11.3 20 358-377 54-73 (153)
312 COG1747 Uncharacterized N-term 75.8 1.2E+02 0.0026 32.7 22.8 165 432-603 65-235 (711)
313 KOG2063 Vacuolar assembly/sort 74.6 69 0.0015 37.2 14.4 128 349-480 505-638 (877)
314 PF13431 TPR_17: Tetratricopep 74.6 3.3 7.1E-05 26.4 2.5 24 345-368 10-33 (34)
315 PF13374 TPR_10: Tetratricopep 74.3 7.9 0.00017 25.3 4.6 26 505-530 4-29 (42)
316 PRK11619 lytic murein transgly 74.1 1.6E+02 0.0035 33.4 29.6 79 281-364 101-179 (644)
317 PF13762 MNE1: Mitochondrial s 73.6 50 0.0011 29.3 10.3 89 239-327 31-128 (145)
318 TIGR02561 HrpB1_HrpK type III 73.6 66 0.0014 28.6 12.3 49 292-342 23-72 (153)
319 PF13431 TPR_17: Tetratricopep 73.4 4.5 9.8E-05 25.8 2.9 23 276-298 10-32 (34)
320 KOG1550 Extracellular protein 73.2 1.6E+02 0.0034 32.8 25.5 47 261-307 228-277 (552)
321 PF13374 TPR_10: Tetratricopep 72.9 9.1 0.0002 25.0 4.6 28 539-566 3-30 (42)
322 COG4649 Uncharacterized protei 72.7 77 0.0017 29.0 15.7 132 469-601 60-195 (221)
323 KOG4077 Cytochrome c oxidase, 72.4 17 0.00037 31.1 6.7 57 299-355 69-125 (149)
324 PF00637 Clathrin: Region in C 72.2 0.81 1.7E-05 40.6 -1.2 84 474-564 13-96 (143)
325 KOG0890 Protein kinase of the 71.9 3.1E+02 0.0067 35.6 29.9 118 503-623 1670-1811(2382)
326 TIGR02508 type_III_yscG type I 71.6 56 0.0012 26.9 9.1 65 546-616 47-111 (115)
327 KOG2066 Vacuolar assembly/sort 70.7 2E+02 0.0042 32.8 24.0 55 252-306 363-419 (846)
328 KOG0687 26S proteasome regulat 69.9 1.3E+02 0.0028 30.5 15.5 93 436-530 107-208 (393)
329 PF09613 HrpB1_HrpK: Bacterial 69.5 87 0.0019 28.3 13.6 51 257-307 22-72 (160)
330 PF00515 TPR_1: Tetratricopept 69.0 14 0.00031 23.0 4.6 27 540-566 3-29 (34)
331 PF07163 Pex26: Pex26 protein; 68.6 1.3E+02 0.0028 29.9 13.1 87 475-561 90-181 (309)
332 KOG0276 Vesicle coat complex C 68.2 77 0.0017 34.8 12.0 133 279-458 614-746 (794)
333 COG2909 MalT ATP-dependent tra 67.9 2.4E+02 0.0052 32.7 26.2 201 394-602 426-647 (894)
334 COG1747 Uncharacterized N-term 67.6 1.9E+02 0.004 31.3 26.4 187 311-514 63-250 (711)
335 KOG1586 Protein required for f 67.4 1.2E+02 0.0027 29.2 19.9 155 256-418 25-189 (288)
336 PF00637 Clathrin: Region in C 67.1 1.8 3.8E-05 38.3 -0.1 85 439-530 13-97 (143)
337 KOG0687 26S proteasome regulat 66.9 1.5E+02 0.0033 30.0 14.6 95 504-598 105-206 (393)
338 PF00515 TPR_1: Tetratricopept 66.8 17 0.00036 22.7 4.6 29 504-532 2-30 (34)
339 PF07163 Pex26: Pex26 protein; 64.6 75 0.0016 31.4 10.3 88 439-526 89-181 (309)
340 COG4455 ImpE Protein of avirul 64.5 41 0.00089 31.9 8.2 73 283-356 5-80 (273)
341 PF07719 TPR_2: Tetratricopept 63.8 20 0.00044 22.1 4.6 26 541-566 4-29 (34)
342 cd08819 CARD_MDA5_2 Caspase ac 62.7 38 0.00083 27.0 6.6 65 264-333 21-85 (88)
343 cd08819 CARD_MDA5_2 Caspase ac 62.5 56 0.0012 26.1 7.4 67 522-594 21-87 (88)
344 PRK13342 recombination factor 62.0 2.2E+02 0.0048 30.3 19.0 30 380-411 173-202 (413)
345 COG2976 Uncharacterized protei 61.7 1.4E+02 0.0031 27.9 15.5 57 510-568 133-189 (207)
346 PF08424 NRDE-2: NRDE-2, neces 61.5 1.9E+02 0.0042 29.5 17.5 117 297-414 49-185 (321)
347 PF07719 TPR_2: Tetratricopept 61.3 24 0.00052 21.7 4.6 29 504-532 2-30 (34)
348 COG2976 Uncharacterized protei 59.5 1.6E+02 0.0034 27.7 15.3 128 470-604 56-190 (207)
349 KOG4234 TPR repeat-containing 59.2 1.6E+02 0.0035 27.7 12.9 90 441-532 103-197 (271)
350 PF13181 TPR_8: Tetratricopept 59.1 27 0.00058 21.6 4.5 27 505-531 3-29 (34)
351 COG5159 RPN6 26S proteasome re 59.0 1.8E+02 0.004 28.9 11.8 22 507-528 129-150 (421)
352 PF09797 NatB_MDM20: N-acetylt 59.0 68 0.0015 33.5 10.0 44 263-306 201-244 (365)
353 PF01347 Vitellogenin_N: Lipop 58.9 3.1E+02 0.0067 30.9 19.7 66 211-279 346-412 (618)
354 TIGR02508 type_III_yscG type I 58.8 1E+02 0.0022 25.4 8.9 51 442-498 48-98 (115)
355 PF10366 Vps39_1: Vacuolar sor 58.7 61 0.0013 27.1 7.7 26 471-496 42-67 (108)
356 PF10345 Cohesin_load: Cohesin 58.6 3.1E+02 0.0068 30.9 31.6 186 298-495 40-252 (608)
357 PF10579 Rapsyn_N: Rapsyn N-te 58.6 30 0.00065 27.0 5.2 44 516-559 19-64 (80)
358 COG4785 NlpI Lipoprotein NlpI, 58.5 1.7E+02 0.0038 27.9 18.6 180 328-532 79-266 (297)
359 PRK14956 DNA polymerase III su 58.0 1.5E+02 0.0032 32.2 12.2 96 198-315 189-284 (484)
360 COG3947 Response regulator con 57.9 53 0.0011 32.6 8.0 98 240-341 239-340 (361)
361 PF13181 TPR_8: Tetratricopept 57.4 30 0.00065 21.4 4.5 27 540-566 3-29 (34)
362 TIGR03504 FimV_Cterm FimV C-te 56.9 23 0.00049 24.3 3.9 24 389-412 5-28 (44)
363 COG2909 MalT ATP-dependent tra 56.5 3.7E+02 0.0081 31.2 29.0 229 359-598 426-684 (894)
364 TIGR03504 FimV_Cterm FimV C-te 56.1 25 0.00054 24.0 4.0 22 510-531 6-27 (44)
365 PF13174 TPR_6: Tetratricopept 56.0 24 0.00052 21.5 3.9 23 509-531 6-28 (33)
366 PRK07003 DNA polymerase III su 55.7 3.3E+02 0.0072 31.5 14.8 37 198-234 187-223 (830)
367 PF07721 TPR_4: Tetratricopept 54.0 18 0.00038 21.3 2.7 20 578-597 6-25 (26)
368 PF13174 TPR_6: Tetratricopept 52.8 20 0.00044 21.8 3.1 13 361-373 13-25 (33)
369 smart00544 MA3 Domain in DAP-5 52.0 1.2E+02 0.0026 25.2 8.8 61 506-568 5-67 (113)
370 PF00244 14-3-3: 14-3-3 protei 51.2 2.4E+02 0.0052 27.4 11.9 59 353-411 6-65 (236)
371 PHA02875 ankyrin repeat protei 50.1 73 0.0016 33.8 8.7 213 322-574 7-231 (413)
372 PF08314 Sec39: Secretory path 49.9 1.7E+02 0.0036 33.9 12.0 224 382-617 431-696 (715)
373 KOG4077 Cytochrome c oxidase, 49.7 1.1E+02 0.0025 26.3 7.7 46 487-532 68-113 (149)
374 KOG2297 Predicted translation 49.4 2.9E+02 0.0063 27.8 22.6 91 224-328 145-237 (412)
375 COG3947 Response regulator con 49.2 2.9E+02 0.0063 27.7 17.0 71 505-576 281-356 (361)
376 COG2178 Predicted RNA-binding 49.2 2.3E+02 0.0049 26.5 10.8 17 395-411 133-149 (204)
377 PF04910 Tcf25: Transcriptiona 48.9 3.3E+02 0.0072 28.3 15.4 100 467-566 39-167 (360)
378 TIGR02397 dnaX_nterm DNA polym 48.8 3.2E+02 0.0069 28.1 14.1 19 293-311 257-275 (355)
379 KOG4648 Uncharacterized conser 48.6 70 0.0015 32.5 7.3 53 286-339 104-156 (536)
380 PF11768 DUF3312: Protein of u 48.6 1.5E+02 0.0033 32.2 10.4 22 438-459 413-434 (545)
381 PF11846 DUF3366: Domain of un 48.1 73 0.0016 29.7 7.4 33 569-601 140-172 (193)
382 PLN03025 replication factor C 47.6 3.2E+02 0.0069 27.8 15.4 36 198-233 167-202 (319)
383 PF11848 DUF3368: Domain of un 47.5 69 0.0015 22.2 5.3 31 550-580 14-44 (48)
384 PF11838 ERAP1_C: ERAP1-like C 47.4 3.1E+02 0.0068 27.6 16.8 82 484-568 146-231 (324)
385 PF14689 SPOB_a: Sensor_kinase 46.8 52 0.0011 24.3 4.9 30 537-566 22-51 (62)
386 KOG0128 RNA-binding protein SA 46.5 5.2E+02 0.011 29.9 29.9 107 485-592 443-553 (881)
387 COG5108 RPO41 Mitochondrial DN 46.0 1.5E+02 0.0032 33.0 9.7 75 473-550 33-115 (1117)
388 KOG1586 Protein required for f 45.6 2.9E+02 0.0064 26.8 21.9 22 514-535 165-186 (288)
389 PF11848 DUF3368: Domain of un 45.1 76 0.0016 22.1 5.2 32 359-390 13-44 (48)
390 PRK13341 recombination factor 45.0 5.5E+02 0.012 29.7 18.9 30 379-410 193-222 (725)
391 PRK14958 DNA polymerase III su 45.0 3.5E+02 0.0076 29.7 13.0 89 375-468 192-280 (509)
392 PF02847 MA3: MA3 domain; Int 45.0 51 0.0011 27.5 5.3 62 507-570 6-69 (113)
393 KOG4567 GTPase-activating prot 44.6 1.1E+02 0.0024 30.7 7.9 58 488-550 263-320 (370)
394 KOG1464 COP9 signalosome, subu 44.5 3.2E+02 0.007 26.9 25.8 225 284-527 70-327 (440)
395 PF10579 Rapsyn_N: Rapsyn N-te 44.4 74 0.0016 24.9 5.4 48 550-597 18-67 (80)
396 KOG0890 Protein kinase of the 44.1 8.8E+02 0.019 31.8 26.8 150 251-407 1389-1542(2382)
397 PF09454 Vps23_core: Vps23 cor 44.0 41 0.0009 25.2 3.9 50 243-292 6-55 (65)
398 KOG0686 COP9 signalosome, subu 43.7 4.1E+02 0.009 27.9 14.2 61 316-376 152-215 (466)
399 KOG4648 Uncharacterized conser 43.1 1E+02 0.0022 31.4 7.5 53 477-531 106-159 (536)
400 PF14689 SPOB_a: Sensor_kinase 42.6 66 0.0014 23.8 4.9 46 364-411 6-51 (62)
401 PF06552 TOM20_plant: Plant sp 42.5 2.7E+02 0.0059 25.8 9.6 96 261-358 7-123 (186)
402 PHA02875 ankyrin repeat protei 41.7 4.4E+02 0.0096 27.7 13.3 79 321-404 72-153 (413)
403 PF11846 DUF3366: Domain of un 41.6 1.1E+02 0.0025 28.4 7.6 32 500-531 141-172 (193)
404 PRK10564 maltose regulon perip 41.6 50 0.0011 33.1 5.2 30 351-380 260-289 (303)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 41.5 2.3E+02 0.005 24.4 10.9 42 263-304 81-124 (126)
406 PRK13342 recombination factor 41.5 4.6E+02 0.0099 27.8 19.1 103 277-397 174-279 (413)
407 cd08318 Death_NMPP84 Death dom 41.4 1.8E+02 0.0039 23.1 8.0 81 177-268 6-86 (86)
408 COG2178 Predicted RNA-binding 41.3 3E+02 0.0066 25.7 9.8 52 325-376 40-97 (204)
409 PRK15180 Vi polysaccharide bio 40.6 5E+02 0.011 28.0 23.0 109 228-340 309-417 (831)
410 PRK10564 maltose regulon perip 40.4 52 0.0011 32.9 5.1 35 501-535 254-289 (303)
411 cd08315 Death_TRAILR_DR4_DR5 D 40.4 2E+02 0.0044 23.4 10.4 75 197-276 21-95 (96)
412 PRK08691 DNA polymerase III su 40.2 3.1E+02 0.0068 31.3 11.7 38 198-235 187-224 (709)
413 KOG2034 Vacuolar sorting prote 39.7 6.7E+02 0.015 29.2 26.7 53 249-306 362-416 (911)
414 KOG4507 Uncharacterized conser 39.6 77 0.0017 34.6 6.4 134 262-396 590-723 (886)
415 PF14669 Asp_Glu_race_2: Putat 39.5 3.3E+02 0.0071 25.5 15.4 56 507-562 136-205 (233)
416 PRK14951 DNA polymerase III su 39.0 3.6E+02 0.0078 30.4 12.0 34 278-312 250-283 (618)
417 PRK13341 recombination factor 38.6 6.8E+02 0.015 29.0 18.9 110 501-611 257-374 (725)
418 PF09454 Vps23_core: Vps23 cor 38.5 71 0.0015 24.0 4.5 49 536-585 6-54 (65)
419 COG0735 Fur Fe2+/Zn2+ uptake r 38.3 1.2E+02 0.0027 26.8 6.8 62 267-328 8-69 (145)
420 PF07575 Nucleopor_Nup85: Nup8 37.9 3.7E+02 0.008 30.0 12.1 24 385-408 407-430 (566)
421 cd00280 TRFH Telomeric Repeat 36.9 2E+02 0.0043 26.7 7.8 23 354-376 117-139 (200)
422 PRK14956 DNA polymerase III su 36.9 5.2E+02 0.011 28.1 12.3 89 377-469 196-284 (484)
423 KOG2582 COP9 signalosome, subu 36.7 5E+02 0.011 26.9 16.4 250 277-568 73-346 (422)
424 PRK10941 hypothetical protein; 36.4 4.4E+02 0.0094 26.2 11.0 78 246-323 182-260 (269)
425 smart00028 TPR Tetratricopepti 36.2 68 0.0015 18.2 3.7 25 506-530 4-28 (34)
426 PRK11619 lytic murein transgly 35.9 7E+02 0.015 28.4 35.4 55 440-495 319-373 (644)
427 COG5108 RPO41 Mitochondrial DN 35.4 1.6E+02 0.0035 32.8 8.1 91 438-531 33-131 (1117)
428 cd00280 TRFH Telomeric Repeat 35.3 2.9E+02 0.0064 25.6 8.6 23 439-461 117-139 (200)
429 TIGR01228 hutU urocanate hydra 35.1 4.9E+02 0.011 28.1 11.3 72 361-456 207-279 (545)
430 PF10475 DUF2450: Protein of u 35.0 4.8E+02 0.01 26.2 11.5 51 321-376 105-155 (291)
431 PRK08691 DNA polymerase III su 35.0 7.5E+02 0.016 28.4 14.0 97 365-466 181-278 (709)
432 PF11663 Toxin_YhaV: Toxin wit 34.8 39 0.00086 29.3 2.9 31 550-582 107-137 (140)
433 KOG3807 Predicted membrane pro 34.2 4E+02 0.0086 27.2 10.0 60 507-566 279-339 (556)
434 smart00638 LPD_N Lipoprotein N 34.1 7E+02 0.015 27.8 27.3 265 186-460 289-574 (574)
435 PRK14961 DNA polymerase III su 34.1 3.4E+02 0.0074 28.2 10.5 37 276-313 243-279 (363)
436 PRK09111 DNA polymerase III su 34.0 7.2E+02 0.016 28.0 16.2 29 284-313 264-292 (598)
437 PRK07003 DNA polymerase III su 33.8 8.2E+02 0.018 28.5 16.4 97 365-466 181-278 (830)
438 PF06552 TOM20_plant: Plant sp 33.7 1.7E+02 0.0036 27.1 6.8 73 261-341 51-134 (186)
439 PRK14970 DNA polymerase III su 33.7 3.7E+02 0.008 27.9 10.8 36 200-235 178-213 (367)
440 PF11663 Toxin_YhaV: Toxin wit 33.7 41 0.00088 29.3 2.8 34 358-393 105-138 (140)
441 PHA02940 hypothetical protein; 33.6 4.5E+02 0.0098 25.4 13.1 93 414-514 123-215 (315)
442 PF11768 DUF3312: Protein of u 33.4 2.7E+02 0.0059 30.4 9.4 129 472-607 412-541 (545)
443 PRK12323 DNA polymerase III su 33.4 7.5E+02 0.016 28.2 13.1 34 277-311 249-282 (700)
444 smart00386 HAT HAT (Half-A-TPR 33.3 73 0.0016 18.9 3.4 26 329-354 2-27 (33)
445 PF11838 ERAP1_C: ERAP1-like C 33.2 5.1E+02 0.011 26.0 20.9 146 449-600 146-306 (324)
446 COG2231 Uncharacterized protei 33.1 3.5E+02 0.0076 25.5 8.9 77 215-291 114-192 (215)
447 PRK09687 putative lyase; Provi 33.1 5.1E+02 0.011 25.9 27.0 74 466-548 204-277 (280)
448 PRK14700 recombination factor 32.5 5.4E+02 0.012 26.0 16.5 35 448-482 141-175 (300)
449 PF00244 14-3-3: 14-3-3 protei 32.0 4.8E+02 0.01 25.3 11.3 59 249-307 5-65 (236)
450 PF11817 Foie-gras_1: Foie gra 31.6 1.9E+02 0.0042 28.2 7.7 59 352-410 182-245 (247)
451 PRK06645 DNA polymerase III su 31.3 5.1E+02 0.011 28.5 11.4 36 277-313 256-291 (507)
452 PF11817 Foie-gras_1: Foie gra 30.7 2.2E+02 0.0048 27.8 7.9 57 508-564 183-244 (247)
453 PF09477 Type_III_YscG: Bacter 30.7 3.2E+02 0.007 22.9 9.3 83 519-608 22-104 (116)
454 PF04097 Nic96: Nup93/Nic96; 30.2 8.4E+02 0.018 27.5 21.8 45 282-327 114-158 (613)
455 KOG4567 GTPase-activating prot 30.0 2.5E+02 0.0053 28.4 7.7 58 453-515 263-320 (370)
456 PF09868 DUF2095: Uncharacteri 29.9 1.8E+02 0.0039 24.4 5.8 44 239-288 61-104 (128)
457 PRK14958 DNA polymerase III su 29.8 6.8E+02 0.015 27.5 12.2 38 275-313 242-279 (509)
458 KOG2396 HAT (Half-A-TPR) repea 29.8 7.6E+02 0.016 26.9 31.6 360 231-601 91-558 (568)
459 COG0735 Fur Fe2+/Zn2+ uptake r 29.7 2.5E+02 0.0054 24.9 7.4 62 455-517 8-69 (145)
460 COG5187 RPN7 26S proteasome re 29.7 5.9E+02 0.013 25.6 15.0 98 467-566 114-220 (412)
461 COG4003 Uncharacterized protei 28.5 2.1E+02 0.0045 22.5 5.5 35 251-285 37-71 (98)
462 PF08424 NRDE-2: NRDE-2, neces 28.5 6.5E+02 0.014 25.6 18.3 62 486-549 49-110 (321)
463 COG5187 RPN7 26S proteasome re 28.4 6.2E+02 0.013 25.4 13.4 134 464-599 77-218 (412)
464 KOG1114 Tripeptidyl peptidase 28.4 1.1E+03 0.023 28.1 14.7 51 467-517 1230-1281(1304)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 28.3 3.8E+02 0.0083 23.0 8.6 42 556-597 81-123 (126)
466 PF12862 Apc5: Anaphase-promot 28.3 3.1E+02 0.0068 21.9 7.4 22 545-566 48-69 (94)
467 PF02847 MA3: MA3 domain; Int 27.9 2.6E+02 0.0056 23.1 6.9 20 321-340 9-28 (113)
468 KOG0991 Replication factor C, 27.4 5.9E+02 0.013 24.8 19.3 135 439-583 136-282 (333)
469 PF14853 Fis1_TPR_C: Fis1 C-te 27.4 2.1E+02 0.0047 20.4 5.2 29 544-574 7-35 (53)
470 PF09477 Type_III_YscG: Bacter 27.3 3.7E+02 0.0081 22.5 9.0 10 228-237 25-34 (116)
471 PF10366 Vps39_1: Vacuolar sor 27.2 1.8E+02 0.0039 24.3 5.7 27 540-566 41-67 (108)
472 smart00777 Mad3_BUB1_I Mad3/BU 27.1 3.1E+02 0.0068 23.6 7.2 74 519-598 49-124 (125)
473 PF04910 Tcf25: Transcriptiona 27.0 7.3E+02 0.016 25.8 22.0 161 382-548 39-234 (360)
474 COG5159 RPN6 26S proteasome re 26.9 6.5E+02 0.014 25.2 15.6 21 438-458 130-150 (421)
475 PRK06645 DNA polymerase III su 26.8 7.8E+02 0.017 27.0 11.9 89 377-468 203-292 (507)
476 PF12862 Apc5: Anaphase-promot 26.8 3.3E+02 0.0072 21.8 7.3 53 359-411 9-69 (94)
477 KOG4521 Nuclear pore complex, 26.8 1.2E+03 0.026 28.3 15.4 28 385-412 985-1012(1480)
478 PRK11639 zinc uptake transcrip 26.7 3.5E+02 0.0077 24.6 8.0 67 450-517 8-74 (169)
479 PF09670 Cas_Cas02710: CRISPR- 26.5 7.7E+02 0.017 25.9 12.7 125 286-411 138-269 (379)
480 PF10475 DUF2450: Protein of u 26.5 6.6E+02 0.014 25.1 13.3 21 571-591 195-215 (291)
481 PF10155 DUF2363: Uncharacteri 26.1 4.3E+02 0.0093 22.8 13.1 44 248-291 21-64 (126)
482 PRK14962 DNA polymerase III su 26.1 8.7E+02 0.019 26.4 18.1 101 377-482 192-292 (472)
483 PRK14963 DNA polymerase III su 25.9 6.7E+02 0.015 27.5 11.3 96 366-467 179-275 (504)
484 PRK14963 DNA polymerase III su 25.8 7.4E+02 0.016 27.2 11.6 33 279-312 242-274 (504)
485 PRK05896 DNA polymerase III su 25.4 8.7E+02 0.019 27.3 12.0 35 201-235 190-224 (605)
486 PRK14951 DNA polymerase III su 25.4 1E+03 0.022 26.9 14.0 88 375-467 197-284 (618)
487 COG0790 FOG: TPR repeat, SEL1 25.3 6.7E+02 0.014 24.8 22.6 186 433-629 77-292 (292)
488 PRK10941 hypothetical protein; 25.3 6.8E+02 0.015 24.8 11.0 55 544-599 187-241 (269)
489 KOG2659 LisH motif-containing 25.3 5.9E+02 0.013 24.5 9.2 53 321-373 71-128 (228)
490 PRK14965 DNA polymerase III su 25.2 7.7E+02 0.017 27.6 11.9 35 200-234 189-223 (576)
491 PRK14971 DNA polymerase III su 25.2 5.5E+02 0.012 29.0 10.7 34 201-234 192-225 (614)
492 PRK05563 DNA polymerase III su 24.9 7.7E+02 0.017 27.4 11.7 30 282-312 249-278 (559)
493 PF12926 MOZART2: Mitotic-spin 24.8 3.7E+02 0.0079 21.5 8.6 43 300-342 29-71 (88)
494 KOG3807 Predicted membrane pro 24.7 5.4E+02 0.012 26.2 9.1 16 360-375 287-302 (556)
495 KOG3636 Uncharacterized conser 24.6 8.7E+02 0.019 25.9 13.4 115 228-342 74-211 (669)
496 PRK09857 putative transposase; 24.6 4.4E+02 0.0096 26.5 9.0 27 578-604 245-271 (292)
497 KOG0991 Replication factor C, 24.5 6.6E+02 0.014 24.5 12.6 35 277-312 237-271 (333)
498 PRK09462 fur ferric uptake reg 24.4 4E+02 0.0086 23.5 7.8 61 458-519 7-68 (148)
499 PRK09857 putative transposase; 24.2 5.7E+02 0.012 25.7 9.6 21 397-417 254-274 (292)
500 KOG4279 Serine/threonine prote 24.0 1.1E+03 0.025 27.0 12.9 116 401-531 181-315 (1226)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-54 Score=489.10 Aligned_cols=397 Identities=16% Similarity=0.246 Sum_probs=358.5
Q ss_pred CCHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHH
Q 036072 209 LSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286 (631)
Q Consensus 209 ~~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 286 (631)
.+...+..++.++...+ ..|+++|++|.++.-+.++..+++.++.+|++.|.+++|..+|+.|.. ++..+|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHH
Confidence 44566777777775443 348999998865544567888888888889888999999988888875 7788899999
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHHHHHhcCCHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ++.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999988889999999999999999999999999998875 57888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHHhhc------------
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA--KGPSPNVRSYTIMIWKFCKQ------------ 431 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~--~g~~p~~~~~~~li~~~~~~------------ 431 (631)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999888999999999999999999999999999999876 57888999999999888875
Q ss_pred --------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036072 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503 (631)
Q Consensus 432 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 503 (631)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchH
Q 036072 584 SRAGRSYVLDELAQKMRFSGKFEVS 608 (631)
Q Consensus 584 ~~~g~~~~A~~l~~~m~~~g~~~~~ 608 (631)
++.|++++|.+++++|.+.|.....
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999976433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-52 Score=479.56 Aligned_cols=407 Identities=17% Similarity=0.299 Sum_probs=370.4
Q ss_pred HHHHhcCC-CCCHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 200 AVLDECGI-NLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276 (631)
Q Consensus 200 ~~l~~~~~-~~~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (631)
..+.+.|+ .++.-....++..|...+ ..|+++|..|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 394 d~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl 468 (1060)
T PLN03218 394 EDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468 (1060)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 33455564 344444445555554433 348899887753 8999999999999999999999999999999998
Q ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHH
Q 036072 277 -LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVL 354 (631)
Q Consensus 277 -~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~L 354 (631)
++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ++.||..+|+.|
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999975 689999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-
Q 036072 355 LGGWCRVKNLMEAGRVWNEMID--KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~- 431 (631)
|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 9999999999999999999986 6899999999999999999999999999999999999999999999999999986
Q ss_pred -------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036072 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492 (631)
Q Consensus 432 -------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~ 492 (631)
+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 493 ~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
+|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 573 VLDYNKFAADLSR----A-------------------GRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 573 ~~~~~~li~~~~~----~-------------------g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
..+|++++..|.+ + +..++|..+|++|.+.|..+....+
T Consensus 789 ~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 9999999876432 2 2247799999999999976543333
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-51 Score=464.89 Aligned_cols=397 Identities=16% Similarity=0.211 Sum_probs=372.1
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272 (631)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 272 (631)
..+++..+.+.|+.++..++..++..+.+.++ .|.++|+.|. .||..+||.+|.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45677778888999999999999988877654 4999999885 3689999999999999999999999999999
Q ss_pred HCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 273 ~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
+.|+ ++..+|+.++.+|+..|..+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.+ +|..+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~ 293 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAW 293 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHH
Confidence 9888 678899999999999999999999999999999999999999999999999999999999999975 499999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
|+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+|+.||.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 432 ----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH
Q 036072 496 R-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA-PV 573 (631)
Q Consensus 496 ~-~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p-~~ 573 (631)
+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+. .| +.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~ 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKL 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCC
Confidence 6 699999999999999999999999999998876 67899999999999999999999999999999754 44 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.+|..|++.|++.|++++|.+++++|++.|.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999885
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-51 Score=479.15 Aligned_cols=409 Identities=15% Similarity=0.220 Sum_probs=365.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272 (631)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 272 (631)
...++..+.+.+..++......++..+.+.++ .|+++|+.|. .||..+||.+|.+|++.|++++|+++|++|.
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~ 179 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556666677777777777777777665543 4999999885 3689999999999999999999999999999
Q ss_pred HCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 273 ~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
..|+ ++..+|+.++.+|+..+++..+.+++..|.+.|+.|+..+||.||.+|++.|+++.|.++|++|.. +|..+|
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~ 256 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISW 256 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchh
Confidence 9998 788999999999999999999999999999999999999999999999999999999999999975 589999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
|+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|+.+|.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 432 ----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------------C-----------
Q 036072 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG------------------------------C----------- 534 (631)
Q Consensus 496 ~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g------------------------------~----------- 534 (631)
+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.+ +
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 99999888888888888888888888888777664421 1
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 535 ------------------------------------------------------CPDDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 535 ------------------------------------------------------~p~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
.+|..+||+||.+|+++|+.++|+++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 34566788888888888888888889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCchHHHH
Q 036072 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR-FSGKFEVSNVL 611 (631)
Q Consensus 561 l~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~~~~~~l 611 (631)
|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. ..|..+....+
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 9998888888998899988889888899999999998888 45655433333
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-50 Score=463.02 Aligned_cols=408 Identities=17% Similarity=0.225 Sum_probs=372.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272 (631)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 272 (631)
.++++..+.+.|..++...+..++..+.+.++ .|.++|+.|. .+|..+||.+|.+|++.|++++|+++|++|.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677777788888888888888888876654 4999999885 3678999999999999999999999999999
Q ss_pred HCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 273 ~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
+.|+ |+..+|+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..+|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~ 357 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSW 357 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeH
Confidence 9998 788899999999999999999999999999999999999999999999999999999999999975 589999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 432 ----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+..+|+++|.+|++.|+.++|.++|++|.. ++.||..||+.+|.+|++.|.++.+.+++..|.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 778999999999999999999999999986 589999999888887777777777777776666
Q ss_pred HCCC------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 496 RSGF------------------------------KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 496 ~~g~------------------------------~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
+.|+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 6554 5678889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 546 GGLISQDRSGEAYKYLEEML-EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
.+|.+.|++++|.++|++|. +.|+.|+..+|++++.+|++.|++++|.+++++|.......+.+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999998 6799999999999999999999999999999999644443333333
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=450.84 Aligned_cols=402 Identities=18% Similarity=0.220 Sum_probs=367.9
Q ss_pred CCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHH
Q 036072 206 GINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283 (631)
Q Consensus 206 ~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 283 (631)
+..++...+..++..+...+. .+.+++..+ .+.|+.||..+||.++.+|++.|+++.|.++|++|.+ ++..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHH
Confidence 467889999999998876553 478888766 5679999999999999999999999999999999975 4667899
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHHHHHhcC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g 362 (631)
++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+ ++.+|..+||+||.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999865 68899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-----------
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~----------- 431 (631)
++++|.++|++|.+ +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999964 599999999999999999999999999999999999999999999999875
Q ss_pred ---------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036072 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502 (631)
Q Consensus 432 ---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 502 (631)
+..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 678999999999999999999999999965 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.||.+|++.|++++|.+++++| ++.|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 699999999999999999999999999998765 67899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC------chHHHHH---HHHHhhhhhh
Q 036072 582 DLSRAGRSYVLDELAQKMRFSGKF------EVSNVLA---RWAETTKNRV 622 (631)
Q Consensus 582 ~~~~~g~~~~A~~l~~~m~~~g~~------~~~~~l~---~~~~~~k~~~ 622 (631)
+|...|+.+.|.++++++...+.. .+.+++. +|.+..+.+.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999998754432 3445554 4554444443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.1e-19 Score=213.24 Aligned_cols=381 Identities=10% Similarity=0.036 Sum_probs=242.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.+.|..+.+.. +.+...+..+...+...|++++|..+|+++...++.+..++..+...+...|+.++|..+|+.+.
T Consensus 483 ~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 483 KAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3666665543221 22344555666666666666666666666666555555666666666666666666666666665
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
+.+ +.+...+..+...|...|++++|..+++.+.+..+.+..+|..+...|.+.|++++|...|+.+.+.. +.+...+
T Consensus 561 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 561 ELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred HhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 543 34455555666666666666666666666655555556666666666666666666666666665542 2244555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRR 447 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g 447 (631)
..+..++.+.|++++|...++.+.+.. ..+...+..+...+... +...+..+...+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 566666666666666666666665532 11233444443333321 4455666777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~ 527 (631)
++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 8888888888877654 344566667777888888888888888877753 4467777777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 036072 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607 (631)
Q Consensus 528 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 607 (631)
++.+... .+..+++.+...+...|+ .+|+.+++++.+.. +-+...+..+..++...|++++|.++++++.+.+.. .
T Consensus 795 ~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~ 870 (899)
T TIGR02917 795 TVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A 870 (899)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 8877643 367777777777777777 67888888777653 334556667777777888888888888877776543 3
Q ss_pred HHHHHHHHHhhh
Q 036072 608 SNVLARWAETTK 619 (631)
Q Consensus 608 ~~~l~~~~~~~k 619 (631)
..++...+....
T Consensus 871 ~~~~~~l~~~~~ 882 (899)
T TIGR02917 871 AAIRYHLALALL 882 (899)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.6e-19 Score=210.01 Aligned_cols=365 Identities=15% Similarity=0.075 Sum_probs=254.9
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.+++..+... .+.+..+|..+...+...|++++|...|+++.+..+.+...+..+...+...|++++|.+.|+.+.
T Consensus 449 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466666655432 234566777777777777777777777777777666666677777777777777777777777777
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
+.. +.+..++..+...+.+.|+.++|..+++++....+.+...+..++..|.+.|++++|..+++.+.+. ...+..+|
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHH
Confidence 654 4566677777777777777777777777776655566667777777777777777777777777764 34456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRR 447 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g 447 (631)
..+..++...|++++|...|+.+.+... .+...+..+...+... +..++..++..+...|
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777777766432 2333444444444321 4566777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~ 527 (631)
++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ |+..++..+..++...|++++|.+.++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777664 3356667777777777777777777777777653 444666677777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 528 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
.+.+... .+...+..+...|...|+.++|.+.|+++.+.. +.+...+..+...+...|+ ++|++++++....
T Consensus 761 ~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 761 AWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 7776543 366777777777777777777777777777664 4566677777777777777 6677777776543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.3e-19 Score=192.40 Aligned_cols=302 Identities=15% Similarity=0.069 Sum_probs=247.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHcCCC
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG---VDTINCLLENLGRSKL 329 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~---~~~~~~Ll~~~~~~g~ 329 (631)
..+...|++++|+..|+++.+.++.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456779999999999999998887888999999999999999999999999987542221 3567888999999999
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD----VVAHNIMLEGLLKIGKRSDAIKL 405 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l 405 (631)
+++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999876666788999999999999999999999999988654332 22455677788899999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036072 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485 (631)
Q Consensus 406 l~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 485 (631)
|+++.+.. |+ +...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|+++
T Consensus 203 ~~~al~~~--p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 203 LKKALAAD--PQ--------------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhHC--cC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 99988753 33 223455677888889999999999999987643333467888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS---QDRSGEAYKYLE 562 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~ll~ 562 (631)
+|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 999999999886 466667788999999999999999999988876 5788888888887775 558899999999
Q ss_pred HHHHCCCCCCHH
Q 036072 563 EMLEKGMKAPVL 574 (631)
Q Consensus 563 ~m~~~g~~p~~~ 574 (631)
+|.++++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 999887776655
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.3e-18 Score=181.52 Aligned_cols=300 Identities=17% Similarity=0.094 Sum_probs=248.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC----ChhhHHHHHHHHHhc
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP----NLTTYTVLLGGWCRV 361 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p----~~~~y~~Li~~~~~~ 361 (631)
...+...|++++|+..|..+.+.. +.+..++..+...+...|++++|..+++.+...... ....+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999975 456778999999999999999999999998764211 125688899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 362 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
|++++|..+|+++.+. -..+..+++.++..+.+.|++++|.+.++.+.+.+..+.... ....+..+..
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~la~ 188 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-----------IAHFYCELAQ 188 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------HHHHHHHHHH
Confidence 9999999999999875 234678899999999999999999999999988654332211 1123456777
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 521 (631)
.+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999998764 234667888889999999999999999999976422235678899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR---AGRSYVLDELAQK 598 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~ 598 (631)
|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999886 456667788999999999999999999999886 6888899988888775 5689999999999
Q ss_pred HHhcC
Q 036072 599 MRFSG 603 (631)
Q Consensus 599 m~~~g 603 (631)
|.+.+
T Consensus 344 ~~~~~ 348 (389)
T PRK11788 344 LVGEQ 348 (389)
T ss_pred HHHHH
Confidence 88655
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4e-15 Score=166.80 Aligned_cols=394 Identities=10% Similarity=0.046 Sum_probs=289.4
Q ss_pred CCCHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCCCHHHHHHHHHhhc--cCchhHHHHHHHhhcCCCCCCCHHHHHHHH
Q 036072 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFR--HARRPAFRFFCWAGDKPGFAHNSRTYNSMM 252 (631)
Q Consensus 175 ~~~~~~l~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~vl~~~~--~~~~~A~~~f~~~~~~~g~~p~~~~y~~li 252 (631)
-...++.+.+|-.++....-.+ ++.|..-. +..++..+. .....|+.++.-+.... .-+...+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~ 83 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVR------DSAGNEQN---IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWV 83 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhh------hhcccccC---HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHh
Confidence 3455677888877765543222 23332222 222222222 22234777776654332 12245555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
......|+++.|...|+++.+..+.+...+..+...+...|++++|++.++.+.+.. +.+...+..+...+...|+.++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHH
Confidence 777789999999999999999988888999999999999999999999999999874 5567788889999999999999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
|...++.+....+.+...+..+. .+...|++++|..+++.+.+....++...+..+...+.+.|++++|+..++.+.+.
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999988665455555554443 47889999999999999887643344555566678889999999999999999875
Q ss_pred CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI----VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 413 g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
. |+ +...+..+...|...|++++ |...|++..+... .+...+..+...+...|++++|.
T Consensus 242 ~--p~--------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 242 G--LD--------------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred C--CC--------------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 3 44 44556677888899999986 8999999887643 36778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 489 ~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
..+++..+.. +-+...+..+..+|...|++++|...|+.+.+.+ |+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 305 ~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 305 PLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999864 3346677888999999999999999999998763 343 33444567788999999999999999876
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 568 GMKAPVLDY----NKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 568 g~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
...-....| ..+-.++...+..+....+..++..
T Consensus 382 ~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 382 RASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred ChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 322112223 3444444455555544455555543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1.9e-15 Score=169.44 Aligned_cols=333 Identities=8% Similarity=-0.022 Sum_probs=274.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
.-.++..+.+.|++++|..+++......+-+...+..++.+....|++++|+..|+.+.+.. +.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34567778889999999999999999988888888888889999999999999999999875 55677888899999999
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
|++++|...+++..+..+.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998776777889999999999999999999999988765333 23333333 34788999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-
Q 036072 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE- 486 (631)
Q Consensus 408 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~- 486 (631)
.+.+....++.. .+..+...+.+.|++++|...++...+... .+...+..+...+...|++++
T Consensus 202 ~~l~~~~~~~~~---------------~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 202 ALLPFFALERQE---------------SAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHhcCCCcchh---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhh
Confidence 987753222222 122345667788999999999999987643 367788889999999999986
Q ss_pred ---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 487 ---AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 487 ---A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
|...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|...+++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999863 346778999999999999999999999999986433 567788889999999999999999999
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 564 MLEKGMKAPV-LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 564 m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
+.... |+. ..+..+..++...|+.++|.+.+++.....
T Consensus 344 al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 98763 443 334456778999999999999999876553
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=6.4e-14 Score=167.58 Aligned_cols=362 Identities=10% Similarity=0.042 Sum_probs=239.7
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH--HHH------------HHHHHHHHHc
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM--ETF------------KIAMNAFAAA 292 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~--~~~------------~~li~~~~~~ 292 (631)
.|...|+...+.. +-+...+..+..++.+.|++++|+..|++..+..+.+. ..+ ......+.+.
T Consensus 287 ~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 3555555443221 12355555666666666666666666666555443211 111 1112344455
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhh----------------------
Q 036072 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT---------------------- 350 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~---------------------- 350 (631)
|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+..+.+...
T Consensus 365 g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66666666666665543 3344455555566666666666666666554432222222
Q ss_pred --------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 351 --------------------YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 351 --------------------y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
+..+...+...|++++|++.|++..+... -+...+..+...|.+.|++++|...++++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334456678999999999999887532 245667778888999999999999999887
Q ss_pred HcCCCCcHHHHHHHHHHHhhc-----------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 411 AKGPSPNVRSYTIMIWKFCKQ-----------------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~~~~~-----------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
+.........|...+. +... ....+..+...+...|+.++|.++++.
T Consensus 523 ~~~P~~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 6432211112211110 0000 011123456678889999999999872
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541 (631)
Q Consensus 462 ~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 541 (631)
.+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..++..|...|++++|.+.++.+.+... .+...+
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~ 674 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQ 674 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHH
Confidence 34466677888889999999999999999999864 44688899999999999999999999998876532 256667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM--KA---PVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 542 ~~li~~~~~~g~~~~A~~ll~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
..+..++...|++++|.+++++++...- .| +...+..+...+.+.|++++|++.+++..
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889999999999999999987532 22 23467777889999999999999999875
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=1.4e-13 Score=154.43 Aligned_cols=355 Identities=11% Similarity=-0.022 Sum_probs=269.5
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|++.|..... ..|+...|..+..+|.+.|++++|+..++...+..+....++..+..+|...|++++|+.-|...
T Consensus 144 ~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 144 NKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 348888876543 35677889999999999999999999999999988878889999999999999999998766544
Q ss_pred HhCCCC--------------------------------cCHHHHHHH---------------------------HHHH--
Q 036072 306 NKYKFK--------------------------------AGVDTINCL---------------------------LENL-- 324 (631)
Q Consensus 306 ~~~g~~--------------------------------~~~~~~~~L---------------------------l~~~-- 324 (631)
....-. +........ +..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 322100 000000000 0000
Q ss_pred ----HcCCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc
Q 036072 325 ----GRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKI 396 (631)
Q Consensus 325 ----~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~ 396 (631)
...+.+++|...|+...+. .+.+...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHC
Confidence 1125678888888887643 2334567888888899999999999999998875 344 56788888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 476 (631)
|++++|...|+.+.+. .|+ +..+|..+...+...|++++|...|++..+... .+...+..+..
T Consensus 379 g~~~eA~~~~~~al~~--~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 379 GDPDKAEEDFDKALKL--NSE--------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 9999999999988775 344 455667778889999999999999999987643 25677778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHH
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN------SYTVLIGGLIS 550 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~li~~~~~ 550 (631)
++.+.|++++|+..|++..+.. +-+...++.+..++...|++++|.+.|++..+.....+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998753 3457889999999999999999999999988753221111 12222223344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.|++++|.+++++..... +.+...+..+...+.+.|++++|.+++++..+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 699999999999998864 33455788999999999999999999998866543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=2.3e-13 Score=162.86 Aligned_cols=364 Identities=14% Similarity=0.078 Sum_probs=261.1
Q ss_pred HHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 036072 212 NLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289 (631)
Q Consensus 212 ~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~ 289 (631)
..+...+..+..... .|...+....... -.|+.. .......+...|++++|+..|++..+..+.+..++..+..++
T Consensus 236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~-~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 236 AALQKYLQVFSDGDSVAAARSQLAEQQKQL-ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHhc-cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344444555544332 2455554432221 122222 223455677899999999999999998888899999999999
Q ss_pred HHccCHHHHHHHHHHHHhCCCCc-CHH------------HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKA-GVD------------TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~-~~~------------~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
.+.|++++|+..|+...+..-.. ... ....+...+.+.|++++|...|+++.+..+.+...+..+..
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999998764221 111 11233567889999999999999998877777888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH------------------------------------------HHHHHH
Q 036072 357 GWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHN------------------------------------------IMLEGL 393 (631)
Q Consensus 357 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~------------------------------------------~li~~~ 393 (631)
.+...|++++|++.|++..+.. |+ ...+. .+...+
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999988752 22 22222 123345
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 473 (631)
...|++++|++.|++..+. .|+ +..++..+...|.+.|++++|...++++.+.... +...+..
T Consensus 472 ~~~g~~~eA~~~~~~Al~~--~P~--------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a 534 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL--DPG--------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYA 534 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 5689999999999999885 454 3334445566677777777777777776654221 2222222
Q ss_pred H--------------------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 474 L--------------------------------------------IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 474 l--------------------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
+ ...+...|+.++|.++++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 2 2334445555555555541 23455667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~ 589 (631)
...|.+.|++++|+..|++..+.... +...+..++..|...|++++|.+.++.+.+.. +.+...+..+..++.+.|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCH
Confidence 89999999999999999999987443 68889999999999999999999999887653 33456677888999999999
Q ss_pred HHHHHHHHHHHhcC
Q 036072 590 YVLDELAQKMRFSG 603 (631)
Q Consensus 590 ~~A~~l~~~m~~~g 603 (631)
++|.++++++....
T Consensus 688 ~eA~~~~~~al~~~ 701 (1157)
T PRK11447 688 AAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999987643
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=3.4e-15 Score=153.18 Aligned_cols=329 Identities=15% Similarity=0.115 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-LLEN 323 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-Ll~~ 323 (631)
..+|..+..++-..|++++|+.+++.+.+..+-..+.|..+..++...|+.+.|.+.|...++. .|+.....+ +...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 5788888888888888888888888888887777788888888888888888888888888876 355444333 3334
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A 402 (631)
+-..|..++|...+.+..+..+--...|+.|.-.+-..|+.-.|+..|++.... .|+ ...|-.|-..|...+.+++|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 444688888888887766654444567888888888888888888888888764 444 45677778888888888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 036072 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD-GLTYNALIKLMKIQ 481 (631)
Q Consensus 403 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~ 481 (631)
+..|...... .|+ ...++..+...|-.+|+++.|+..+++..+. .|+ ...|+.|..++-..
T Consensus 272 vs~Y~rAl~l--rpn--------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 272 VSCYLRALNL--RPN--------------HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHhc--CCc--------------chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhc
Confidence 8887776553 444 3334444555555666666666666665553 222 34566666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l 560 (631)
|++.+|.+.|++..... .--....+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..
T Consensus 334 G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred cchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 66666666666665542 122445555666666666666666666655543 222 33455555556666666666666
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 561 LEEMLEKGMKAPV-LDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 561 l~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+++.++ +.|+. ..|+.+...|-..|+.+.|.+.+.+..
T Consensus 411 Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 411 YKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 666555 34443 235556666666666666666555544
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=5e-13 Score=153.04 Aligned_cols=353 Identities=10% Similarity=0.016 Sum_probs=239.7
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.++|....... +.+...+..+...+...|++++|+..+++..+..+.+.. +..+..++...|+.++|+..++.+.
T Consensus 67 ~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 67 NSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4666666543321 223555666777777777777777777777777666666 7777777777777777777777777
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL------TTYTVLLGGWC-----RVKNL---MEAGRVWN 372 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~------~~y~~Li~~~~-----~~g~~---~~A~~l~~ 372 (631)
+.. +.+...+..+..++...+..+.|...++.+.. .|+. .....++..+. ..+++ ++|++.++
T Consensus 144 ~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 764 34555555666666677777777777765543 1111 11122222221 11223 66777777
Q ss_pred HHHHc-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 373 EMIDK-GFKPDVV-AH----NIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 373 ~m~~~-g~~p~~~-ty----~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+... ..+...|..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~----------------~~la~~yl~ 284 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ----------------RWVASAYLK 284 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH----------------HHHHHHHHh
Confidence 77753 2223221 11 11134456778899999999998876532 33111 113557888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCC---HHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-----------FKPT---IHTYNM 508 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~---~~t~~~ 508 (631)
.|++++|..+|+.+.+..... ....+..+..++...|++++|.++++.+.+.. -.|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 899999999999987653211 13456667778899999999999999998752 1123 234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+...+...|+.++|+++++++...... +...+..+...+...|++++|++.+++.+... +-+...+...+..+.+.|+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCC
Confidence 788889999999999999999876433 67888899999999999999999999998864 3345667778889999999
Q ss_pred HHHHHHHHHHHHhcC
Q 036072 589 SYVLDELAQKMRFSG 603 (631)
Q Consensus 589 ~~~A~~l~~~m~~~g 603 (631)
+++|+.+++++....
T Consensus 443 ~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 443 WRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.71 E-value=5.7e-13 Score=149.58 Aligned_cols=336 Identities=13% Similarity=0.028 Sum_probs=254.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.+...-..+.+.|+++.|+..|++.....+ ++..|..+..+|...|++++|++.++..++.. +.+...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566778889999999999999887654 56788999999999999999999999999875 5567788999999999
Q ss_pred CCChHHHHHHHHHHhc------------------------------ccCCChhhHHHHHH--------------------
Q 036072 327 SKLPKEAQLLFDKLKH------------------------------RFTPNLTTYTVLLG-------------------- 356 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~------------------------------~~~p~~~~y~~Li~-------------------- 356 (631)
.|++++|..-|..+.. ..+.+...+..+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999875543311 00111111111100
Q ss_pred ----------HH------HhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH
Q 036072 357 ----------GW------CRVKNLMEAGRVWNEMIDKG-FKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418 (631)
Q Consensus 357 ----------~~------~~~g~~~~A~~l~~~m~~~g-~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~ 418 (631)
.+ ...+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|+...+. .|+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~- 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR- 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-
Confidence 00 11257889999999998765 233 4566788888888999999999999998874 444
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 419 ~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
....|..+...+...|++++|...|+...+... -+...|..+...+...|++++|...|++..+..
T Consensus 364 -------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 364 -------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred -------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 234455667778889999999999999887643 357888889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----
Q 036072 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV----- 573 (631)
Q Consensus 499 ~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~----- 573 (631)
+.+...+..+..++.+.|++++|...|++.++... -+...|+.+...+...|++++|.+.|++.....-..+.
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 34577788889999999999999999999987532 25788999999999999999999999999875321111
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 574 L-DYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 574 ~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
. .++..+..+...|++++|.+++++.....
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 1 12222333445799999999999876544
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.6e-13 Score=135.62 Aligned_cols=310 Identities=16% Similarity=0.206 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLG 356 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~ 356 (631)
+++++.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|.. +..||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 3455666666666666666666666666655556666666666554322211 445555543 45666666666666
Q ss_pred HHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH----cCCCCcHHHHHHHHHH
Q 036072 357 GWCRVKNLME----AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS-DAIKLFEVMKA----KGPSPNVRSYTIMIWK 427 (631)
Q Consensus 357 ~~~~~g~~~~----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-~A~~ll~~m~~----~g~~p~~~~~~~li~~ 427 (631)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++.. .|..++.++.. +.+.|-..+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~------- 354 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT------- 354 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc-------
Confidence 6666665543 3445556666666666666666666666555542 23333333332 112221111
Q ss_pred HhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPPDG---LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500 (631)
Q Consensus 428 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~---~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 500 (631)
+...|...+..|.+..+.+.|.++..-+... -+.|+. .-|..+..+.|.....+.-...|+.|.-.-+-
T Consensus 355 ----d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 355 ----DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred ----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 3344555666677777888777777666532 133332 24556677778888888888888888877777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-C--------HHH-----HHHH------
Q 036072 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-R--------SGE-----AYKY------ 560 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~--------~~~-----A~~l------ 560 (631)
|+..+...++++....|.++-.-++|..++..|...+...-.-++..+++.. . +.. |..+
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888775555555444555555433 1 100 1111
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 561 -LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 561 -l~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
-.+|.... -+....+.++-.+.+.|..++|.+++.-+..++.
T Consensus 511 ~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 511 QPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred hHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 12233333 3344566777777888888888888888755553
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=3.9e-12 Score=143.47 Aligned_cols=384 Identities=13% Similarity=0.064 Sum_probs=277.7
Q ss_pred HHHHHHHHhhccC-chhHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 036072 212 NLVVDVLERFRHA-RRPAFRFFCWAGDKPGFAHNS--RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288 (631)
Q Consensus 212 ~~~~~vl~~~~~~-~~~A~~~f~~~~~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~ 288 (631)
..+..++..+++. ...|+..|..+.+. .|+. ..+ .++..+...|+.++|+.++++.......+......+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3355555554432 34688888776433 2332 234 888999999999999999999984444455566666789
Q ss_pred HHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH
Q 036072 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 289 ~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
+...|++++|+++|+.+.+.. +-+...+..++..|...++.++|++.++.+.... |+...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD-PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-cchHHHHHHHHHHHhcchHHHHH
Confidence 999999999999999999986 4557778888899999999999999999998763 34455555555555566776799
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------cCCCCc---HHHHHHHH
Q 036072 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA--------------------KGPSPN---VRSYTIMI 425 (631)
Q Consensus 369 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~--------------------~g~~p~---~~~~~~li 425 (631)
+.++++.+.. +-+...+..++.++.+.|-...|+++..+-.. .+..++ ..-|..+=
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999999973 33567778888999999988888877664221 111110 00111111
Q ss_pred HHH------hh---cCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 036072 426 WKF------CK---QNA-------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489 (631)
Q Consensus 426 ~~~------~~---~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 489 (631)
.++ .. .++ .+.--.+-++...|++.++++.|+.|...+.+....+-.++..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 111 11 011 11123355677889999999999999988877666788889999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHHHH
Q 036072 490 IYKEMVRSG-----FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-----------CPD--D-NSYTVLIGGLIS 550 (631)
Q Consensus 490 l~~~m~~~g-----~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~t~~~li~~~~~ 550 (631)
+|..+.... ..++......|.-+|...+++++|..+++.+.+... .|| - ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999987642 123444457888999999999999999999987311 122 2 334456777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.|+..+|++.++++.... +-|......+...+...|++..|+++++......
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 999999999999998764 6678888899999999999999999998766543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=1.6e-12 Score=148.87 Aligned_cols=379 Identities=12% Similarity=0.028 Sum_probs=278.2
Q ss_pred CCCCCHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHH
Q 036072 206 GINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283 (631)
Q Consensus 206 ~~~~~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 283 (631)
..++++..|...+.-..-.+ ..|++.|..... .-..+...+..+...+.+.|++++|..+|++..+..+.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34677777776666543333 347777776543 12344667899999999999999999999999988887888888
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~ 363 (631)
.+..++...|++++|+..++.+.+.. +.+.. +..+..++...|+.++|...++++.+..+.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999998874 45566 88888889999999999999999988777788888888888889999
Q ss_pred HHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCcHHHHHHHHHHH
Q 036072 364 LMEAGRVWNEMIDKGFKPDV------VAHNIMLEGLL-----KIGKR---SDAIKLFEVMKAK-GPSPNVRSYTIMIWKF 428 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~-----~~g~~---~~A~~ll~~m~~~-g~~p~~~~~~~li~~~ 428 (631)
.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+... .+.
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~--- 237 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DYQ--- 237 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HHH---
Confidence 9999998876664 2331 11122222222 12234 6788888888754 22333211 000
Q ss_pred hhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHH
Q 036072 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP---TIH 504 (631)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ 504 (631)
......+..+...|++++|...|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+..-.. ...
T Consensus 238 -----~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 238 -----RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred -----HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 00111122344668999999999999887643 332 22225678999999999999999988643111 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-----------CPD---DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 570 (631)
....|..++...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 566777788999999999999999987531 123 2345667778889999999999999998863 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
-+...+..+...+...|++++|++.+++.....
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 567788999999999999999999999987644
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.3e-12 Score=124.98 Aligned_cols=405 Identities=13% Similarity=0.125 Sum_probs=286.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHh--hccCchh---HHHHHHHhhcCCC-------------------CCCCHHHHHHHH
Q 036072 197 NMEAVLDECGINLSHNLVVDVLER--FRHARRP---AFRFFCWAGDKPG-------------------FAHNSRTYNSMM 252 (631)
Q Consensus 197 ~l~~~l~~~~~~~~~~~~~~vl~~--~~~~~~~---A~~~f~~~~~~~g-------------------~~p~~~~y~~li 252 (631)
-+-..|+..|+++++.+-..+++- |.+...+ -++-|--+. +.| .+.+..+|..||
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~-~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI 214 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMR-NFGEDSTSSWKSGAVADLLFETLPKTDETVSIMI 214 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcc-ccccccccccccccHHHHHHhhcCCCchhHHHHH
Confidence 356678889999999887776653 2222222 222222221 111 234578999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 253 SILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
.++|+--+.+.|.+++++..+. |.+..++||.+|.+-.-... .+++.+|....+.||..|+|+++.+..+.|+++
T Consensus 215 ~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~ 290 (625)
T KOG4422|consen 215 AGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFE 290 (625)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchH
Confidence 9999999999999999998765 45899999999977554333 788999999999999999999999999999887
Q ss_pred HH----HHHHHHHhc-ccCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHHcC
Q 036072 332 EA----QLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLME-AGRVWNEMID----KGFKP----DVVAHNIMLEGLLKIG 397 (631)
Q Consensus 332 ~A----~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g~~~~-A~~l~~~m~~----~g~~p----~~~ty~~li~~~~~~g 397 (631)
.| .+++.+|++ ++.|...+|..+|..+++.++..+ |..++.++.. +-++| |..-|...|..|.+..
T Consensus 291 ~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~ 370 (625)
T KOG4422|consen 291 DARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLR 370 (625)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhh
Confidence 65 456667776 699999999999999999887644 4555555543 22333 4566788889999999
Q ss_pred CHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKG---PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
+.+-|.++..-+.... ..++... ...-|..+....|+....+.....|+.|.-.-+-|+..+...+
T Consensus 371 d~~LA~~v~~ll~tg~N~~~ig~~~~-----------~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 371 DLELAYQVHGLLKTGDNWKFIGPDQH-----------RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred hHHHHHHHHHHHHcCCchhhcChHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 9999999887665421 1222211 1223556677778888899999999999988888999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------H----H-HHHHHH-------HHHHcC
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NY--------E----M-GRKVWD-------EMIRRG 533 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g-~~--------~----~-A~~~~~-------~m~~~g 533 (631)
+++..-.+.++-.-++|.+++..|...+...-.-++..+++.. .. . + |..+++ +|..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999998886555555444455555433 11 0 0 111111 2222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 036072 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM----KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609 (631)
Q Consensus 534 ~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 609 (631)
........+...-.+.+.|..++|.++|.-+.+.+- .|......-+++.-.+....-.|..+++-|-..+......
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 233556667777778999999999999999966542 2333334466677778888999999999887666544443
Q ss_pred HHHHHHHhhh
Q 036072 610 VLARWAETTK 619 (631)
Q Consensus 610 ~l~~~~~~~k 619 (631)
.-.+.-+...
T Consensus 598 La~RI~e~f~ 607 (625)
T KOG4422|consen 598 LAQRIMEDFA 607 (625)
T ss_pred HHHHHHHhcC
Confidence 3334433333
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=2.8e-13 Score=139.41 Aligned_cols=286 Identities=16% Similarity=0.111 Sum_probs=174.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~ 337 (631)
.|+.++|...|.+..+..+.-.-+|+.|...+-.+|+...|++-|++..+.. +--...|-.|...|...+.++.|...+
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 3455555555544444433222345555555556666666666666666543 223455666666666666666666666
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 416 (631)
......-+.....|..|...|...|.++.|++.|++..+. .|+ ...|+.|..++-..|++.+|...|...... .|
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p 351 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CP 351 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CC
Confidence 6654433444556666666666667777777777666653 333 456677777777777777777766666542 22
Q ss_pred cHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD-GLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 417 ~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+ .+.+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+
T Consensus 352 ~--------------hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 352 N--------------HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred c--------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 2 4456667777777777777777777666553 222 3456666677777777777777777766
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 496 RSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 496 ~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
+ ++|+ ...|+.+...|-..|+++.|.+.+.+.+..+.. =...++.|...|-..|++.+|+.-+++.+..
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 5 3454 456667777777777777777777766654211 2445666677777777777777777776653
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.58 E-value=1.8e-10 Score=130.08 Aligned_cols=357 Identities=12% Similarity=0.045 Sum_probs=260.7
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|+..++... .+ -..+......+...+...|++++|+++|+++.+..+.++..+..++..+...++.++|++.++.+
T Consensus 85 ~~A~~~~eka~-~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 85 QEVIDVYERYQ-SS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 34888777654 11 11223344444668888899999999999999999988888888899999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-------- 377 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-------- 377 (631)
... .|+...+..++..+...++..+|.+.++++.+..+.+...+..++....+.|-...|+++..+-.+.
T Consensus 163 ~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 163 AER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred ccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 886 4566666555555555666766999999998887778888888888888888776666655432210
Q ss_pred -----------------------------------------CCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 378 -----------------------------------------GFKPDV-V----AHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 378 -----------------------------------------g~~p~~-~----ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
+-.|.. . ..-=.+-++...|++.++++.|+.|..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 011111 0 011123344455666666666666665
Q ss_pred cCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhH
Q 036072 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-----CPPDGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 412 ~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~ 486 (631)
.|... ...+-.++..+|...+++++|..+++.+.... ..++......|.-++...+++++
T Consensus 321 ~~~~~---------------P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 321 EGYKM---------------PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred cCCCC---------------CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 54321 22344567889999999999999999986642 23344446789999999999999
Q ss_pred HHHHHHHHHHCCC-------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 487 AVRIYKEMVRSGF-------------KPTI-HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 487 A~~l~~~m~~~g~-------------~p~~-~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 552 (631)
|..+++++.+..- .||- ..+..++..+...|+..+|++.++++...... |......+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 9999999997311 1222 23455677889999999999999999876544 8899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 553 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+.+|.+.++.+.... +-+..+....+.++...|++++|.++.+++.+..
T Consensus 465 ~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 465 LPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred CHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999997776652 4456667788899999999999999998876543
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.4e-10 Score=122.78 Aligned_cols=282 Identities=10% Similarity=0.080 Sum_probs=147.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHcCCChHHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN--CLLENLGRSKLPKEAQL 335 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~--~Ll~~~~~~g~~~~A~~ 335 (631)
.|+++.|.+.+....+....+.-.|.....+....|+++.|.+.+..+.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 578888887776655442222223333344446777788888888777664 34433222 33556677777777777
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV-------AHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
.++.+.+..+-+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7777776666677777777777777777777777777777765442221 122222222222223333333332
Q ss_pred HHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 409 m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
+.+. .| .++.....+...+...|+.++|.+++++..+. .++... .++.+....++.++++
T Consensus 255 lp~~--~~--------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 255 QSRK--TR--------------HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred CCHH--Hh--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 2111 01 13333344445555555555555555554442 222211 1122222335555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 489 ~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
+..+...+.. +-|...+..+...|...+++++|.+.|+.+.+. .|+..+|..|...+.+.|+.++|.+++++-
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555432 223344445555555555555555555555543 345555555555555555555555555544
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.5e-10 Score=124.83 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
...-.....+...|++++|..++.+..+..+.....|.+|...|-..|+.+++...+-..-... +-|...|..+.+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3333344444455999999999999999999999999999999999999999998887776665 667799999999999
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH----NIMLEGLLKIGKRSD 401 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~ 401 (631)
+.|.++.|.-+|.+..+..+++...+---+..|-+.|+...|.+-|.++.......|..-+ -.+++.+...++.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999888888888888889999999999999999999986332232222 334566777888899
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC------------------
Q 036072 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG------------------ 463 (631)
Q Consensus 402 A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------------ 463 (631)
|.+.++.....+..- . +...++.++..|.+...++.|......+....
T Consensus 299 a~~~le~~~s~~~~~--~------------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 299 AAKALEGALSKEKDE--A------------SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHHhhcccc--c------------cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 999998877632110 0 22334455666666677777777777766521
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 464 ---------CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP--TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 464 ---------~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+.++... .-++-++......+....+.....+..+.| +...|.-+..+|...|++.+|..+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 1222222 122233445555556666666666665333 4677888899999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
...-+...|--+..+|...|..++|.+.++..+... +-+...-.+|...+.+.|+.++|.+.++.|.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 555577889899999999999999999999988753 2234445577888889999999999988854
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=2.3e-10 Score=121.76 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=90.6
Q ss_pred HHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 246 RTYNSMMSILG--RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 246 ~~y~~li~~~~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
..+..+.+++. ..|+++.|.+.+.+..+....+...+-....+....|+.+.|.+.+....+..-.+...........
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34445555543 4688888888887766654434444555566677778888888888777654312222233334666
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
+...|+++.|...++.+.+..+-+..++..+...+...|++++|.+++..+.+.++.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 777788888888888877766667777777788888888888888888888777543
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=1.8e-09 Score=124.67 Aligned_cols=320 Identities=12% Similarity=0.061 Sum_probs=220.6
Q ss_pred CChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC-C-CCcCHHHHHHHHHHHHcCCC---hHHH
Q 036072 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY-K-FKAGVDTINCLLENLGRSKL---PKEA 333 (631)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~-g-~~~~~~~~~~Ll~~~~~~g~---~~~A 333 (631)
+...++...++.|....+-+.....-+.-.....|+.++|.++|+..... + ...+....+.|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 45556666666666655545555555555566778888888888777662 1 12344555567777766655 2233
Q ss_pred HHH----------------------HHHHhc---ccCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 334 QLL----------------------FDKLKH---RFTP--NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 334 ~~l----------------------~~~m~~---~~~p--~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
..+ .+.... ..++ +...|..+..++.. ++.++|...|.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 111111 1234 56677888777776 7888888877777764 3665544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 466 (631)
..+...+...|++++|...|+.+... .|+.. .+..+...+.+.|+.++|...++...+... .
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~---------------a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~ 574 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNE---------------DLLAAANTAQAAGNGAARDRWLQQAEQRGL-G 574 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-c
Confidence 44455556889999999999887553 22221 123345667778899999999988887642 2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.... +...++.+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3333334444455669999999999988875 467788888888899999999999999998886433 6677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+..+++.....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8889999999999999888764 3456778889999999999999999998886544
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=3.9e-10 Score=119.43 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=218.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHH--HHHHHHHhcCCHHHHH
Q 036072 292 AKERKKAVAIFELMNKYKFKAGVDT-INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT--VLLGGWCRVKNLMEAG 368 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~~~~~-~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~--~Li~~~~~~g~~~~A~ 368 (631)
.|++++|.+.+....+.. .++.. |.....+..+.|+.+.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888766642 22333 333345558899999999999999764 33433222 3367889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC
Q 036072 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448 (631)
Q Consensus 369 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~ 448 (631)
..++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. ....+ -..+|..++.......+
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l-------~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML-------EQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH-------HHHHHHHHHHHHHHhcC
Confidence 9999999875 336778889999999999999999999999988665322 22211 01122233333344456
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .++... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 66677777766443 3457788889999999999999999999999884 455532 233344456999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 529 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
..+.... |...+..+...|.+.+++++|.+.|+.+.+. .|+..+|..+..++.+.|+.++|.+++++-
T Consensus 320 ~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987443 6778889999999999999999999999985 699999999999999999999999999865
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=5.1e-13 Score=134.88 Aligned_cols=256 Identities=18% Similarity=0.207 Sum_probs=69.1
Q ss_pred HHHHHcCCChHHHHHHHHHHhccc--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~--~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
...+.+.|++++|.++++...... +.|...|..+...+...+++++|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344444455555555553322211 222333333344444445555555555555443222 33334444444 34455
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKL 477 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~ 477 (631)
+++|.+++....+.. ++. ..+..++..+.+.++++++.++++.+.... .+.+...|..+...
T Consensus 93 ~~~A~~~~~~~~~~~--~~~---------------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDP---------------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccccccc--ccc---------------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 555555544433221 111 112223333444455555555555544321 23344455555555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+.+.|+.++|++++++..+.. +-|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccc
Confidence 555666666666666555542 1134455555555555565555555555554432 22344455555555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
+.++++..... +.|+.....+..++...|+.++|.++.++
T Consensus 234 l~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 234 LEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccc
Confidence 66666655532 33555555566666666666666555544
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=7.8e-13 Score=133.54 Aligned_cols=260 Identities=14% Similarity=0.110 Sum_probs=80.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
.+...+.+.|++++|++++++..... ..+...|..+...+...++++.|++.++.+.+.+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34666677778888888775543333 3344555556666666777777777777777665 2355556666665 567
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLF 406 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll 406 (631)
+++++|.+++...-+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777766543332 355556666777777777777777777765432 3345566666667777777777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 036072 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 407 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 486 (631)
++..+. .|+ +..+.+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++
T Consensus 170 ~~al~~--~P~--------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 170 RKALEL--DPD--------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHHH---TT---------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHHc--CCC--------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccc
Confidence 777664 333 33334445555566666666666666655442 2344455566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 487 A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
|+.+|++..+.. +.|......+..++...|+.++|.++..+..
T Consensus 233 Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 233 ALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 666666666542 3355556666666666666666666655543
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=9e-09 Score=118.92 Aligned_cols=333 Identities=11% Similarity=0.017 Sum_probs=248.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHccC---HHHHHHH----------------
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEK---GLLSMETFKIAMNAFAAAKE---RKKAVAI---------------- 301 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---g~~~~~~~~~li~~~~~~g~---~~~A~~v---------------- 301 (631)
+.....-+--...+.|+.++|.++|+..... +-.+.....-++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 3455555555677889999999999998762 22456666678888887766 3333222
Q ss_pred ------HHHHHhC-CC-Cc--CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 302 ------FELMNKY-KF-KA--GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 302 ------~~~m~~~-g~-~~--~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.+..... +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1122111 11 33 67788888888876 78888999888876543 44433444455557899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHH
Q 036072 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451 (631)
Q Consensus 372 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (631)
+++... .|+...+..+...+.+.|+.++|...++...+.. |+.. ..+..+.......|++++
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~--------------~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDN--------------ALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccH--------------HHHHHHHHHHHhCCCHHH
Confidence 998664 4555566777888999999999999999998753 4321 112223334446699999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 452 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
|...+++..+. .|+...|..+..++.+.|+.++|+..|++..+.. +-+...++.+..++...|++++|+..+++..+
T Consensus 595 Al~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999875 4578889999999999999999999999999874 44577888888999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.... +...+..+..++...|++++|...+++..+.. +-+..+.........+..+++.|.+-+++--.
T Consensus 672 l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 672 GLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6443 67889999999999999999999999999864 22335566777777788888888877665433
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=5e-10 Score=107.74 Aligned_cols=301 Identities=14% Similarity=0.095 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc---CHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA---GVDTINCLLE 322 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~---~~~~~~~Ll~ 322 (631)
..|-.=++.+. .++.++|.++|-+|.+...-+.++.-+|.+.|...|..+.|+.+...+.+..--+ .......|..
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 34444444443 4678999999999999777778888899999999999999999999988752111 1234455677
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCC
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV----VAHNIMLEGLLKIGK 398 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~ 398 (631)
-|...|-++.|+.+|..+.+...--......|+..|-...+|++|+++-+++.+.|-++.. .-|.-+...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 7889999999999999987643334556788899999999999999999998887655432 233444445555678
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 478 (631)
++.|..++.+..+. .|+.+--+++ +.+.+...|+++.|.+.++...+.+..--..+...|..+|
T Consensus 196 ~d~A~~~l~kAlqa--~~~cvRAsi~--------------lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 196 VDRARELLKKALQA--DKKCVRASII--------------LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHHhh--Cccceehhhh--------------hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 88999998888765 3333222222 4566777899999999999988876655567788888899
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHH
Q 036072 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS---QDRSG 555 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~ 555 (631)
...|+.++....+..+.+... ....-..+-+.-....-.+.|..++.+-+.. +|+...+.-||..-.. .|...
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchh
Confidence 999999999999988887643 3333444444444445556666655554443 5888888888886653 45567
Q ss_pred HHHHHHHHHHHC
Q 036072 556 EAYKYLEEMLEK 567 (631)
Q Consensus 556 ~A~~ll~~m~~~ 567 (631)
+-+.+++.|+..
T Consensus 336 ~sL~~lr~mvge 347 (389)
T COG2956 336 ESLDLLRDMVGE 347 (389)
T ss_pred hhHHHHHHHHHH
Confidence 777778888754
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=9.1e-10 Score=117.20 Aligned_cols=292 Identities=11% Similarity=-0.037 Sum_probs=210.9
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCCh-hhHHHHHHHHHhcCCHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGV-DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL-TTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~-~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~-~~y~~Li~~~~~~g~~~~A 367 (631)
...|+++.|.+.+....+.. |+. ..+-....++...|+.+.|...+.+..+..+.+. ...-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35699999999998887763 443 3344456778889999999999999876543222 2444458888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC
Q 036072 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g 447 (631)
...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..+. ..+..+-. ..+..++ ..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~-------~a~~~~l----~~~ 239 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ-------KAEIGLL----DEA 239 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-------HHHHHHH----HHH
Confidence 99999999975 33667888999999999999999999999999865432 22221100 1111111 122
Q ss_pred CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHH--HHcCCHHH
Q 036072 448 RMDIVYDLLKEMEERGC---PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY-NMIMKSY--FQTGNYEM 521 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~Li~~~--~~~g~~~~ 521 (631)
..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+ ...++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 22323334444443321 1377888899999999999999999999999863 343311 0123333 33577888
Q ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDD--NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
+.+.++...+.... |. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 318 ~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998888775322 44 6677889999999999999999996554445789999999999999999999999999874
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=5.5e-09 Score=103.76 Aligned_cols=297 Identities=10% Similarity=0.064 Sum_probs=215.7
Q ss_pred HHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 247 TYNSMMSILGR--ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 247 ~y~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
.-..+.+++.+ .|+|..|++++.+-.+.+..+.-.|.....+.-..|+.+.+-..+.+..+..-.++...+-......
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 33445555543 6999999999999888877777778888888888899999999999998874466777777778888
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcC
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV-------VAHNIMLEGLLKIG 397 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g 397 (631)
...|+.+.|..-++++.+..+-++........+|.+.|++.....++..|.+.|+--|. .+|+.+++-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999888888766678888999999999999999999999999998876554 35566665555545
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 477 (631)
..+.-...++..-.+ . +.++..-.+++.-+.++|+.++|.++..+..+++..|.. ...-.
T Consensus 244 ~~~gL~~~W~~~pr~-l---------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 244 GSEGLKTWWKNQPRK-L---------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred cchHHHHHHHhccHH-h---------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 444444444433221 1 113344445666777788888888888887777666552 12223
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+.+-++.+.-++..++-.+.. +-+...+.+|...|.+.+.|.+|...|+..++. .|+..+|+.+..++.+.|+..+|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHH
Confidence 456677777666666655431 223467778888888888888888888876654 56888888888888888888888
Q ss_pred HHHHHHHHH
Q 036072 558 YKYLEEMLE 566 (631)
Q Consensus 558 ~~ll~~m~~ 566 (631)
.++.++...
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 888877654
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.40 E-value=3.2e-09 Score=115.58 Aligned_cols=352 Identities=13% Similarity=0.090 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
|-.+.+.|-..|+++.|...|.+......-+ .-.+.-+.+.+.+.|+.+.+...|+...+.. +-+..+...|...|..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHh
Confidence 3334444444444444444444443332221 1123334444444444444444444444432 2233333333333433
Q ss_pred CC----ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 327 SK----LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE----MIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 327 ~g----~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
.+ ..+.|..++.+..+..+.|...|-.+...|-...-+.. +.+|.. |...+..+.....|.+.......|+
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 32 22333333333333333344444444444443333322 444433 3344555677778888888888899
Q ss_pred HHHHHHHHHHHHHc---CCCCcHH-------HHHHH--HHHHhhc-----------------------------------
Q 036072 399 RSDAIKLFEVMKAK---GPSPNVR-------SYTIM--IWKFCKQ----------------------------------- 431 (631)
Q Consensus 399 ~~~A~~ll~~m~~~---g~~p~~~-------~~~~l--i~~~~~~----------------------------------- 431 (631)
++.|...|...... -..+|.. -||.- ....+..
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcH
Confidence 99999988887654 1223331 23221 1111110
Q ss_pred ---------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCC
Q 036072 432 ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIKLMKI------------QKM 483 (631)
Q Consensus 432 ---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~------------~g~ 483 (631)
++.+++-+...+.+...+..|.+-|....+. ...+|.+..-+|-+.|.. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 4445555555555555555555555444432 122455555555554432 334
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 484 ~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
.++|+++|.+.++.. +-|...-|.+.-+++..|++.+|..+|.+..+.... +..+|-.+..+|...|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988864 457778888899999999999999999999986432 556788899999999999999999998
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 564 MLEK-GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 564 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
..+. .-..+..+...|..++.+.|.+.+|.+.+.......
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8765 445677889999999999999999999887766544
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.9e-10 Score=118.34 Aligned_cols=284 Identities=13% Similarity=0.105 Sum_probs=179.5
Q ss_pred ChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 036072 260 QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTINCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 260 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~~Ll~~~~~~g~~~~A~~l~ 337 (631)
+.++|..+|+.....-.-+..+...+..+|...+++++|+.+|+.+.+.. ..-+.++|.+.+--+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677777777555444445666777778888888888888887777642 12244555555433221 1112222
Q ss_pred -HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 338 -DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415 (631)
Q Consensus 338 -~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 415 (631)
+.+.+..+..+.+|-++..+|.-.++.+.|++.|+...+. .| ...+|..+-.-+.....+|.|...|+.. +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~ 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LG 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh----hc
Confidence 2233334446677888888888788888888877777763 44 5667777767777777777777777766 34
Q ss_pred CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 416 p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
.|...|++ |..|...|.+.++++.|+-.|+...+-+.. +.+....+...+.+.|+.|+|+++++++.
T Consensus 484 ~~~rhYnA------------wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 484 VDPRHYNA------------WYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred CCchhhHH------------HHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 45666653 455666777777777777777776664333 45555566666777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 496 ~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
...-+ |...-.-.+..+...+++++|...++++.+.-.+ +...|..+...|.+.|+.+.|+.-|--|.+..
T Consensus 551 ~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 551 HLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 65422 3333334455566677777777777777764211 44556666677777777777777777766654
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.1e-09 Score=109.14 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
+..+.-.+.+.|--..+...|++++.+.... ++-|+....-|...|-+.|+-.+|.+.+-+--+. ++-|..|...|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 5555555666666666666666666554432 4445666777777777777777777665544332 3556677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI-SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (631)
-|....-+++|+.+|++..- +.|+..-|..||..|. +.|++++|.+++++..++ ++-|......|++.+...|..
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~- 710 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK- 710 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-
Confidence 77777777777777776543 4678888877776665 567888888888777654 455666677777777666643
Q ss_pred HHHHHHHHH
Q 036072 591 VLDELAQKM 599 (631)
Q Consensus 591 ~A~~l~~~m 599 (631)
++.++.+++
T Consensus 711 d~key~~kl 719 (840)
T KOG2003|consen 711 DAKEYADKL 719 (840)
T ss_pred hHHHHHHHH
Confidence 334444443
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.5e-09 Score=102.98 Aligned_cols=292 Identities=17% Similarity=0.120 Sum_probs=218.6
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCC--hhhHHHHHHHHHhcCCHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPN--LTTYTVLLGGWCRVKNLME 366 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~--~~~y~~Li~~~~~~g~~~~ 366 (631)
-.++.++|++.|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++...+.+. ...+ ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4578899999999999854 455666778899999999999999999998764 1111 2345667888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
|+++|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+-.+. +.-| ...|.-|...+...
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eI-------AqfyCELAq~~~~~ 193 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEI-------AQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHH-------HHHHHHHHHHHhhh
Confidence 99999999986422 455678899999999999999999999988654433 2222 23345567777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
.+++.|..++.+..+...+ .+..--.+-......|+++.|.+.|+...+.+..--..+...|..+|...|+.++...++
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999988765322 222333455678899999999999999999865555678899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVLDELAQKMR 600 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~ 600 (631)
..+.+... +...-..+-.......-.+.|..++.+-+.. .|+...+..|+..-..- |...+-..++++|-
T Consensus 273 ~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 273 RRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 99987633 3334444444444555667777777776665 68988888888876433 34555556666664
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.37 E-value=4.9e-09 Score=113.46 Aligned_cols=371 Identities=12% Similarity=0.062 Sum_probs=278.0
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|.+++..+.++. +.+...|..|..+|-..|+.+++...+-...-..+-+.+.|..+.......|+++.|.-.|.+.
T Consensus 156 eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45889888876654 3457899999999999999999998887777677778899999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT-----TYTVLLGGWCRVKNLMEAGRVWNEMIDK-GF 379 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~-----~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~ 379 (631)
++.. +++...+--=+..|-+.|+...|...|.++-...+|... .--.+++.+...++-+.|.+.++..... +-
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 9986 566666666678899999999999999999876554322 2234466677778889999998887763 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH------HHHHhhc------CHHHHHHHHHHHhccC
Q 036072 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM------IWKFCKQ------NAAVYTCLITGFGNRR 447 (631)
Q Consensus 380 ~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l------i~~~~~~------~~~~~~~li~~~~~~g 447 (631)
.-+...+++++..+.+...++.|......+......+|..-+.+- ...++.. +..+ --++-++.+.+
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhccc
Confidence 345667889999999999999999999888774444444333110 0001110 1111 12334455555
Q ss_pred CHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 448 RMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~ 525 (631)
..+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.+++|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 6666666666666665 33356688889999999999999999999999876666788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE--------KGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
|+..+..... +...--.|-..+.+.|+.++|.+.+..+.. .+..|+....-.....+...|+.++-.....
T Consensus 472 y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999875322 344455566678899999999999998542 2455666666777788889999887666655
Q ss_pred HHHh
Q 036072 598 KMRF 601 (631)
Q Consensus 598 ~m~~ 601 (631)
.|-.
T Consensus 551 ~Lv~ 554 (895)
T KOG2076|consen 551 TLVD 554 (895)
T ss_pred HHHH
Confidence 5544
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=2e-10 Score=123.33 Aligned_cols=255 Identities=18% Similarity=0.091 Sum_probs=175.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 036072 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424 (631)
Q Consensus 345 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l 424 (631)
.++..+|.+++..-.-+|+.+.|..++.+|++.|+..+..-|-.|+-+ .++...+..++..|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 379999999999999999999999999999999999998877777765 78888999999999999999999998776
Q ss_pred HHHHhhc-------------------------------------------------------------------------
Q 036072 425 IWKFCKQ------------------------------------------------------------------------- 431 (631)
Q Consensus 425 i~~~~~~------------------------------------------------------------------------- 431 (631)
+-.+.+.
T Consensus 278 vip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~ 357 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKG 357 (1088)
T ss_pred HHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCC
Confidence 5544441
Q ss_pred --------------------CHHHHHHHHHHHhcc----------------------CCHHHHHHHHHHHHH--------
Q 036072 432 --------------------NAAVYTCLITGFGNR----------------------RRMDIVYDLLKEMEE-------- 461 (631)
Q Consensus 432 --------------------~~~~~~~li~~~~~~----------------------g~~~~A~~l~~~m~~-------- 461 (631)
++..|..++.-|.+. .+..+..++......
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh
Confidence 222232222222211 111111111111100
Q ss_pred --------cCCCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 462 --------RGCPP-------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 462 --------~g~~p-------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
+-+.| --..-+.++..|+..-+..+++..-++....-+. ..|..||+-++.....+.|..+.
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~ 514 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFV 514 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhch
Confidence 00111 0112456666777777777777665555543222 67889999999999999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 527 DEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAP-VLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 527 ~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+++... .+..|..-+..+.+.+.+.+...++.++++++.+.-. .|+ ..++-.+++.....|+.+...++.+-+...
T Consensus 515 ~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 515 DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 888754 3445777788888889999999999999999876422 222 344556777778888888888887776665
Q ss_pred CCC
Q 036072 603 GKF 605 (631)
Q Consensus 603 g~~ 605 (631)
|..
T Consensus 595 gl~ 597 (1088)
T KOG4318|consen 595 GLS 597 (1088)
T ss_pred hhh
Confidence 543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.3e-08 Score=100.75 Aligned_cols=293 Identities=13% Similarity=0.078 Sum_probs=220.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcC
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g 362 (631)
..++-.....+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+..+ .|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567777777778888888777766666666677778899999999999877533 36677877764433322
Q ss_pred CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 363 NLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 363 ~~~-~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
.+. -|..+++ -...+ ..|..++.+.|.-.++.++|...|+...+.+ |. ...+|+.+.+
T Consensus 314 kLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~--------------~~~aWTLmGH 372 (559)
T KOG1155|consen 314 KLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN--PK--------------YLSAWTLMGH 372 (559)
T ss_pred HHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cc--------------hhHHHHHhhH
Confidence 211 1222211 11223 3467777888888899999999999998753 33 3456777888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 521 (631)
-|...++...|.+-++...+-.. .|-..|-.|-++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++
T Consensus 373 EyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHH
Confidence 99999999999999999988743 488899999999999999999999999998863 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP--VLDYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~l 595 (631)
|++-|......|-. +...+..|...|-+.++.++|..+|++.++. |...+ .....-|..-+.+.+++++|..+
T Consensus 451 AiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 451 AIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 99999999886533 6688999999999999999999998887652 43322 22223366777899999999998
Q ss_pred HHHHHhc
Q 036072 596 AQKMRFS 602 (631)
Q Consensus 596 ~~~m~~~ 602 (631)
..+....
T Consensus 530 a~~~~~~ 536 (559)
T KOG1155|consen 530 ATLVLKG 536 (559)
T ss_pred HHHHhcC
Confidence 8776643
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=1.8e-08 Score=100.10 Aligned_cols=292 Identities=11% Similarity=0.091 Sum_probs=232.4
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
..|++.+|++...+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+. ..++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3699999999999988887 445556666778888899999999999998764 45566778888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
-++++.+.+.. +.........+|.+.|++..+..++..|.+.|.-.+...-. + ...+|+.+++-....+..
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-l-------e~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-L-------EQQAWEGLLQQARDDNGS 245 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-H-------HHHHHHHHHHHHhccccc
Confidence 99999987544 56678889999999999999999999999998765543221 1 345677777777766777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
+.-...++....+ .+-++..-.+++.-+...|+.++|.++.++..+.+..|+..+ + -.+.+-++...-.+..++-
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---L-IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---H-HhhcCCCCchHHHHHHHHH
Confidence 7766677666543 444667777888889999999999999999999887776222 2 2345667777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 530 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+.. .-++..+.+|...|.+++.+.+|.+.|+...+. .|+..+|+-+..++.+.|+..+|.++.++-.
T Consensus 321 l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6542 225588899999999999999999999977774 7899999999999999999999999887654
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.3e-08 Score=99.64 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~ 512 (631)
+.|...+.+.|.-.++.++|...|+...+.+.. ....|+.+-.-|...++...|.+-|+..++-. +-|-..|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 345556677888889999999999998876433 45677778888999999999999999999875 5688999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036072 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (631)
|.-.+...-|.-+|++..+-... |...|.+|..+|.+.++.++|.+.|+.....| ..+...|..|...+-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999886433 88999999999999999999999999999887 33667899999999999999999
Q ss_pred HHHHHHHHh
Q 036072 593 DELAQKMRF 601 (631)
Q Consensus 593 ~~l~~~m~~ 601 (631)
.+.+++--+
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 988876543
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=7.9e-09 Score=103.27 Aligned_cols=369 Identities=14% Similarity=0.084 Sum_probs=205.6
Q ss_pred HHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHH----HHHHHHHHHHHccCHHHHHHH
Q 036072 228 AFRFFCWAGDKPGFAHNS-RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSME----TFKIAMNAFAAAKERKKAVAI 301 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~----~~~~li~~~~~~g~~~~A~~v 301 (631)
|+..++-+.+.. .-||. ..-..+-..+.+.+.+.+|+++|+....+-+ ++.. +.+.+...+.+.|.++.|+..
T Consensus 220 alntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dains 298 (840)
T KOG2003|consen 220 ALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINS 298 (840)
T ss_pred Hhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhh
Confidence 555555543332 22332 2223344566777888888888877766543 2322 455555667788999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---------c----CCChhhHHH-----HHHHHHhcCC
Q 036072 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---------F----TPNLTTYTV-----LLGGWCRVKN 363 (631)
Q Consensus 302 ~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---------~----~p~~~~y~~-----Li~~~~~~g~ 363 (631)
|+...+. .|+..+--.|+-++..-|+.++..+.|.+|..- + .|+....|. .+.-+-+.+.
T Consensus 299 fdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k 376 (840)
T KOG2003|consen 299 FDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK 376 (840)
T ss_pred HHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh
Confidence 9888876 477766666666666788999999999888531 1 133333322 2222222221
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH-----H--------HH--------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHH
Q 036072 364 --LMEAGRVWNEMIDKGFKPDVV-----A--------HN--------IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420 (631)
Q Consensus 364 --~~~A~~l~~~m~~~g~~p~~~-----t--------y~--------~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 420 (631)
-++++-.--++..--+.|+.. . |. .-...|.+.|+++.|++++.-+.+..-......
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saa 456 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAA 456 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHH
Confidence 122221111222222233311 0 00 011246789999999999988876533222111
Q ss_pred HHHH--HHHH--hhc-----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------------
Q 036072 421 YTIM--IWKF--CKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP------------- 466 (631)
Q Consensus 421 ~~~l--i~~~--~~~-----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------------- 466 (631)
-+.| +..+ .+. ++.....-.+....+|++++|.+.+++.....-.-
T Consensus 457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred hhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 1111 1111 000 11111111112223455666666665554432111
Q ss_pred --------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 467 --------------------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 467 --------------------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
+.....-+...|....+..+|++++.+.... ++.|....+.|...|-+.|+-..|.+.+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 2222333333344444444444444333322 3445666777777777777777776665
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-SRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g 603 (631)
-+--.. +.-|..+..-|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|++..|.++++++...-
T Consensus 616 ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 616 YDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 433322 334666777777777788888899999987754 689999999877655 57899999999999876543
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=2e-09 Score=113.09 Aligned_cols=280 Identities=15% Similarity=0.024 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 294 ~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
+.++|+..|..+.+. +.-+..+...+..+|...+++++|+++|+.++.. ...+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567899999885554 3444577778899999999999999999999764 334677888877554332 12222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 371 W-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 371 ~-~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
+ +++.+. -+-.+.+|.++-.+|.-.++.+.|++.|++..+. +|+ ...+|+.+.+-+.....+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~--------------faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR--------------FAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc--------------cchhhhhcCChhhhhHHH
Confidence 2 222222 2335789999999999999999999999998873 452 223444555566667789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNA---LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
|.|...|+.... .|...||+ |...|.+.++++.|+-.|++..+-+ +-+......+...+-+.|+.++|++++
T Consensus 472 d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 472 DKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 999999987654 35555555 5667999999999999999999864 446677788888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
++......+ |+..--..+..+...+++++|+..++++++. ++-+...|-.+...|-+.|+.+.|+.-+.-+-..
T Consensus 547 ~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 547 EKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999987555 5555445666788889999999999999985 2334566889999999999999998877665543
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=1.5e-08 Score=98.26 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=40.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++..+. ...+...+..+...+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhh
Confidence 3444444455555555554444432 112334444444555555555555555554443 12233444444444445555
Q ss_pred HHHHHHHHHHHH
Q 036072 554 SGEAYKYLEEML 565 (631)
Q Consensus 554 ~~~A~~ll~~m~ 565 (631)
.++|..+.+.+.
T Consensus 219 ~~~a~~~~~~~~ 230 (234)
T TIGR02521 219 VAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=2.1e-08 Score=97.32 Aligned_cols=86 Identities=8% Similarity=0.022 Sum_probs=36.8
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A 522 (631)
+...|++++|...+.+..+... .+...+..+...+...|++++|..++++..+. ...+...+..+...+...|+.++|
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 3334444444444444333211 12333444444444455555555555544443 122333344444444445555555
Q ss_pred HHHHHHHH
Q 036072 523 RKVWDEMI 530 (631)
Q Consensus 523 ~~~~~~m~ 530 (631)
..+++.+.
T Consensus 223 ~~~~~~~~ 230 (234)
T TIGR02521 223 QRYGAQLQ 230 (234)
T ss_pred HHHHHHHH
Confidence 55444443
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.17 E-value=7.2e-10 Score=119.10 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
|+..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.|+-+ .++..-++.+++-|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555555555444444433 444444555555555555555555555554
Q ss_pred HHHHH
Q 036072 546 GGLIS 550 (631)
Q Consensus 546 ~~~~~ 550 (631)
..+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=5.3e-07 Score=94.54 Aligned_cols=359 Identities=10% Similarity=0.037 Sum_probs=234.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCH
Q 036072 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314 (631)
Q Consensus 238 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~ 314 (631)
..|+..|...|-.=...+-+.|..-.+..+......-|+- -..+|..-...|.+.+.++-|..+|...++.- +.+.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchh
Confidence 4567777777777777777777777777777777777663 23367777777777777777777777776642 4455
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 315 ~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
..|..+...--..|..+....+|++.....+.....|-....-+-..|++..|..++....+.... +...|-.-+....
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 566665555555667777777777766666656666666666666777777777777766665322 5556666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-----------------CHHHHHHHHHHHhccCCHHHHHHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLK 457 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~l~~ 457 (631)
.+.+++.|..+|......+-.+-+.+-++-+.-+... -...|-.+.+.+-+.++++.|.+.|.
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666677766666655432222222211111111111 22345555566666666777766665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 036072 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----G 533 (631)
Q Consensus 458 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g 533 (631)
.-... ++-..-.|-.|...=-+.|.+-+|..++++..-.+ +-+...|-..|++=.+.|+.+.|..++.+.+.. |
T Consensus 710 ~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 710 QGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred hcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 54333 33344566666666677778888888888877664 446778888888888888888887766655442 1
Q ss_pred -------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 534 -------------------------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 534 -------------------------~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+.-|....-.+...+....++++|.+.|.+.+..+ +-...+|.-+...+.++|.
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCC
Confidence 12345555566666777788899999999988765 3345678888888889998
Q ss_pred HHHHHHHHHHHHh
Q 036072 589 SYVLDELAQKMRF 601 (631)
Q Consensus 589 ~~~A~~l~~~m~~ 601 (631)
-+.-.+++.+...
T Consensus 867 eed~kev~~~c~~ 879 (913)
T KOG0495|consen 867 EEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887754
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=3.7e-08 Score=108.97 Aligned_cols=215 Identities=10% Similarity=0.019 Sum_probs=107.0
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
+.++|...+++..+..+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35566666666555445555566666666666666666666666666542 11344555555666666666666666666
Q ss_pred HHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 409 m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
..+.. |+... .+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|.
T Consensus 398 Al~l~--P~~~~--------------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 398 CLKLD--PTRAA--------------AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHhcC--CCChh--------------hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 65532 22110 001111223334566666666666554422213334455555566666666666
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 489 RIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 489 ~l~~~m~~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
..+.++... .|+ ....+.+...|+..| ++|...++.+.+. ...+....+..+ .|.-.|+.+.+..+ +++.+
T Consensus 462 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 462 KLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhc
Confidence 666665443 222 223334444445555 3555555554432 111121222222 23444555555444 55555
Q ss_pred C
Q 036072 567 K 567 (631)
Q Consensus 567 ~ 567 (631)
.
T Consensus 535 ~ 535 (553)
T PRK12370 535 E 535 (553)
T ss_pred c
Confidence 4
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=6.8e-11 Score=84.99 Aligned_cols=49 Identities=37% Similarity=0.793 Sum_probs=30.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 346 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666654
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=2.6e-06 Score=86.30 Aligned_cols=369 Identities=11% Similarity=0.051 Sum_probs=247.1
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|..+|+...... ..+...|-.-+..=.+++++..|..++++....-+--...|-..+..=-..|++..|.++|+...
T Consensus 91 RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4888888764322 33567788888888899999999999999887644334466666667777899999999999998
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GF-KPDVV 384 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~-~p~~~ 384 (631)
+. .|+...|++.|+.=.+.+.++.|..+++...-- .|++..|--....=.+.|+...|..+|....+. |- ..+..
T Consensus 169 ~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 86 799999999999999999999999999987643 388999998888889999999999999888764 11 11223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH---HHHHHHH---HHHhhc------------------------CHH
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV---RSYTIMI---WKFCKQ------------------------NAA 434 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~---~~~~~li---~~~~~~------------------------~~~ 434 (631)
.+.+....=.++..++.|.-+|.-..+. .|.. ..|..+. ..+... |-.
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 3444444434456677777777666553 1221 1111111 111110 555
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHH---HHhcCChhHHHHHHHHHHHC-------
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL-------TYNALIKL---MKIQKMPDEAVRIYKEMVRS------- 497 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~li~~---~~~~g~~~~A~~l~~~m~~~------- 497 (631)
+|--.+..-...|+.+...++|+..... ++|-.. .|..+=-+ =....+++.+.++|+..++.
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 6666777777788888888888888765 444221 12111111 13456666666666554441
Q ss_pred -----------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 498 -----------------------------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 498 -----------------------------g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
|.-|-..+|...|..=.+.++++.+.+++++.++.+.. |..+|......=
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 33455555555566556667777777777777766543 566666666666
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 549 ISQDRSGEAYKYLEEMLEKG-MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 549 ~~~g~~~~A~~ll~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
...|+.+.|..+|+-+++.. .......|.+.|.--...|.++.|..+++++.+...
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 66777777777777776653 233445567777777777778888888877776554
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.5e-06 Score=95.41 Aligned_cols=364 Identities=11% Similarity=0.045 Sum_probs=212.2
Q ss_pred hhHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc---CHHHHHHH
Q 036072 226 RPAFRFFCWA-GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK---ERKKAVAI 301 (631)
Q Consensus 226 ~~A~~~f~~~-~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g---~~~~A~~v 301 (631)
+.|+.+|..+ ...+...||+.. .+-..+.+.++.+.|+..|.+..+.++.+..++..|...-.... .+..+++.
T Consensus 181 ~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 4577777763 346667777654 22345567788888888888877776655444444433333333 34455555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036072 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378 (631)
Q Consensus 302 ~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 378 (631)
+...-... .-++.+.+.|...|.-.|++..+..+...+..... .-...|.-+.++|-..|++++|...|.+....
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~- 336 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA- 336 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-
Confidence 55544433 45677777788888888888888888777654311 12335777888888888888888888777654
Q ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc------------------------C
Q 036072 379 FKPDV--VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------------N 432 (631)
Q Consensus 379 ~~p~~--~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~------------------------~ 432 (631)
.++. ..+--+...+.+.|+++.+...|+...+. .|+..--..++..+... +
T Consensus 337 -~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 337 -DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred -CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 3333 33445677888888888888888887764 33332222222211110 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCC-----
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKE----MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS---GFK----- 500 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~----- 500 (631)
...|-.+...|-.. +...++.+|.. |...+-.+.....|.+.......|++++|...|...... ...
T Consensus 414 ~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 34444444444443 33333555543 334455566677777777777777777777777766543 112
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 501 -PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578 (631)
Q Consensus 501 -p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 578 (631)
++..+-..+...+-..++.+.|.+.|..+.+.. |+- ..|--+.......+...+|...+++..+.. .-++..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 222233334455556667777777777777652 221 112222211112356677777777776653 334445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 036072 579 FAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 579 li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+...+.+...+..|.+-++.+.
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHH
Confidence 6666666666666666555443
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=2.3e-08 Score=110.68 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=177.4
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC---------RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
..++|..+|++..+..+.+...|..+..++. ..+++++|...+++..+.. +-+..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 3467777777766654545556655555443 2345899999999999863 23677788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
++|...|++..+. .|+ +...+..+...+...|++++|...+++..+.... +...+..++..+.
T Consensus 355 ~~A~~~~~~Al~l--~P~--------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~ 417 (553)
T PRK12370 355 IVGSLLFKQANLL--SPI--------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 9999999999885 455 4455666778888999999999999999886443 2223334444566
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 559 (631)
..|++++|...++++.+..-.-+...+..+..+|...|+.++|...++++..... .+....+.+...|...| ++|..
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHH
Confidence 7899999999999988754222455677788889999999999999998765421 13444555556667666 58888
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 560 YLEEMLEK-GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 560 ll~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.++++.+. ...+...-+ +-..+.-.|+.+.+..+ +++.+.|.
T Consensus 495 ~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 495 TIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 88877653 112221122 45556667787777777 88887774
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.5e-10 Score=83.16 Aligned_cols=50 Identities=44% Similarity=0.771 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 430 (631)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999998875
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=1.9e-07 Score=100.34 Aligned_cols=296 Identities=15% Similarity=0.112 Sum_probs=199.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~ 361 (631)
.--....+...|++++|++.++.-... +......+......+.+.|+.++|..++..+.++.+.|..-|..+..+..-.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 333455667778888888888665443 2333444556677778888888888888888777666666666666666332
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHH
Q 036072 362 K-----NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435 (631)
Q Consensus 362 g-----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 435 (631)
. +.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP------------------sl 145 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP------------------SL 145 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc------------------hH
Confidence 2 4666777777776642 3322222222222221122 2344455555566643 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEER----G----------CPPDG--LTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 499 (631)
|+.|-..|....+.+-..+++..+... + -.|+. .++..+.+.|...|++++|++++++.+++
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 444555555555555555666555432 1 13444 34566677889999999999999999997
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---
Q 036072 500 KPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD--- 575 (631)
Q Consensus 500 ~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~--- 575 (631)
.|+ +..|..-.+.|-+.|++.+|.+.++........ |...-+-.+..+.+.|++++|.+++....+.+..|....
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 455 778999999999999999999999999987655 777778888889999999999999999987765432211
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 576 -----YNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 576 -----~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..-...+|.+.|++..|++.+..+..
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 24567889999999999887766543
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=5.7e-07 Score=96.72 Aligned_cols=297 Identities=16% Similarity=0.123 Sum_probs=208.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC-
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS- 327 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~- 327 (631)
-....++...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3445667889999999999988655544455678888999999999999999999999987 44555555666665222
Q ss_pred ----CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 328 ----KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL-MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 328 ----g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 402 (631)
.+.+....+++++.+.++ .....-.+.-.+.....+ ..+...+..+...|+++ +|+.|-..|....+..-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 356778889998877653 222222222222222233 34555667777888653 466666666655566666
Q ss_pred HHHHHHHHHc----CC----------CCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-
Q 036072 403 IKLFEVMKAK----GP----------SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD- 467 (631)
Q Consensus 403 ~~ll~~m~~~----g~----------~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 467 (631)
.+++...... +. .|+... .++.-+...|...|++++|+++++...+. .|+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l-------------w~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL-------------WTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 6666665532 11 122211 23455677888899999999999998886 344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN------SY 541 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~ 541 (631)
+..|..-...+-+.|++++|.+.++...+.. .-|...-+-.+..+.++|++++|.+++......+..|-.. .|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 6678888889999999999999999999876 3477777788888899999999999999988776533322 22
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 542 --TVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 542 --~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.-...+|.+.|++..|++.|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345678899999999887766544
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.4e-08 Score=97.81 Aligned_cols=236 Identities=11% Similarity=0.096 Sum_probs=185.9
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN-IM 389 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~-~l 389 (631)
..|..--+.+.++|.+.|.+.+|++.|+.-.+. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-.+||. -+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence 344444567888999999999999988876554 356788989999999999999999999988875 45555554 45
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
.+.+-..++.++|.++|+...+.. |. ++.+..++...|.-.++++.|+.+++++.+.|+. +..
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~--~~--------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-spe 359 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH--PI--------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPE 359 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC--Cc--------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChH
Confidence 577778899999999999887752 22 3344455566777788999999999999999987 788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 547 (631)
.|+.+--+|...+++|-++.-|.+....--.|+ ...|..|-......|++..|.+.|+-....+.. +...+|.|.-.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL 438 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVL 438 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHH
Confidence 888888888889999999999988886544444 456777777778889999999999988876443 56788888887
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 036072 548 LISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~~ 567 (631)
-.+.|++++|..+++...+.
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 88899999999999888764
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=2.1e-07 Score=98.94 Aligned_cols=243 Identities=17% Similarity=0.203 Sum_probs=177.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-----GF-KPDVV-AHNIMLEGLLKIGKRSDAIKLFEVMKAK---GPSP 416 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~~-ty~~li~~~~~~g~~~~A~~ll~~m~~~---g~~p 416 (631)
-..+...|...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... ..-+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999887754 31 22222 2334667888999999999999998752 1111
Q ss_pred cHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---c--CCC-CCH-HHHHHHHHHHHhcCChhHHHH
Q 036072 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE---R--GCP-PDG-LTYNALIKLMKIQKMPDEAVR 489 (631)
Q Consensus 417 ~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~~-p~~-~t~~~li~~~~~~g~~~~A~~ 489 (631)
+... -..+++.|...|.+.|++++|...++...+ + |.. |.. ..++.+...|+..+++++|..
T Consensus 278 ~h~~-----------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 278 DHPA-----------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred CCHH-----------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 2111 234567778889999999999888876543 1 222 122 246677778999999999999
Q ss_pred HHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHHcCCHH
Q 036072 490 IYKEMVRS---GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----G-CCP-DDNSYTVLIGGLISQDRSG 555 (631)
Q Consensus 490 l~~~m~~~---g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~ 555 (631)
+++...+. -+.+ -..+++.|...|.+.|++++|.+++++++.. | ..+ ....++.|...|.+.+++.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 99876642 1222 2467899999999999999999999998753 1 122 2557888999999999999
Q ss_pred HHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 556 EAYKYLEEMLE----KGM-KAP-VLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 556 ~A~~ll~~m~~----~g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+|.++|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999987653 232 223 4569999999999999999999988764
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.07 E-value=3.3e-06 Score=88.73 Aligned_cols=346 Identities=12% Similarity=0.062 Sum_probs=229.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHH
Q 036072 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE----MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~----m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~ 302 (631)
|.++++... ..++-+...|......=-.+|+.+...+++.+ +...|+ .+.+.|-.=...|-..|..--+..+.
T Consensus 425 AkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 425 AKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence 566776654 34566789999999998999999999999876 445676 68889999899999999999999999
Q ss_pred HHHHhCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 303 ELMNKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 303 ~~m~~~g~~~--~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
...+..|+.- -..||+.-...|.+.+.++-|..+|.....-++-+...|......=-..|..++...+|++.... ++
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~p 581 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CP 581 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CC
Confidence 9998888643 35688888899999999999999999998888888889999888888889999999999999986 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
-....|-....-+-..|++..|..++....+.... +...|-.-+..-. .+..++.|..+|.+..
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~---------------en~e~eraR~llakar 645 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF---------------ENDELERARDLLAKAR 645 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh---------------ccccHHHHHHHHHHHh
Confidence 45566666777788899999999999998876433 4444544433322 3345566666665544
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539 (631)
Q Consensus 461 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (631)
.. .|+...|.--+..--..+..++|++++++..+. -|+ ...|..+.+.+-+.++++.|.+.|..-.+. ++-..-
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 42 344444444444444455556666666555543 222 234445555555555555555555443332 111223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
.|-.|...=.+.|.+-.|..++++..-++ +-+...|-..|..-.+.|+.+.|..++.+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333344455555555555554443 33444455555555555555555544433
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=8.9e-07 Score=90.09 Aligned_cols=351 Identities=11% Similarity=0.018 Sum_probs=207.3
Q ss_pred hhHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHN-SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
+.|.+++.|..+ ..|| +.-|......|...|+|+++.+--.+..+.++--..++..=..++-..|++++|+.=...
T Consensus 132 ~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 132 DEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred HHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 348888888753 3456 777888888888999998888777777766554445666666777777888877632221
Q ss_pred HH-hCCC--------------------------------CcCHHHHHHHHHHHHc--------CC---------------
Q 036072 305 MN-KYKF--------------------------------KAGVDTINCLLENLGR--------SK--------------- 328 (631)
Q Consensus 305 m~-~~g~--------------------------------~~~~~~~~~Ll~~~~~--------~g--------------- 328 (631)
.. -.|+ -|+....++....+.. .+
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 11 0011 1111111111111100 00
Q ss_pred -----ChHHHHHHHHHHhcc--cCC--C---------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 329 -----LPKEAQLLFDKLKHR--FTP--N---------LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 329 -----~~~~A~~l~~~m~~~--~~p--~---------~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
.+..|...+.+-... ..+ + ..+...-...+.-.|+.-.|..-|+..+.....++. .|--+.
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a 367 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRA 367 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHH
Confidence 001111111100000 000 0 001111111122234555555555555554222211 144455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 470 (631)
.+|....+.++..+.|.+..+.... ++.+|.--.+.+.-.+++++|..=|++....... +...
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~----------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPE----------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCC----------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 5556666666666666665553222 3344444445555557888999888887765322 4556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHH--HHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-----CPDDN--SYTV 543 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~--t~~~ 543 (631)
|.-+.-+..+.+.+++++..|++.++. ++-....|+.....+...+++++|.+.|+..++... ..+.. +...
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 666666677888999999999999876 455678899999999999999999999999886422 12222 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
++..- -.+++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++--
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222 3488999999999998865 3345668999999999999999999998754
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=7.2e-06 Score=83.23 Aligned_cols=344 Identities=12% Similarity=0.066 Sum_probs=238.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
|.++|+..+ ...|+...|++.|+.=.+-+.++.|..++++..-.. |....|-.....=-++|+...|..+|+...+
T Consensus 160 aRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777775443 457888999999999888899999999998887554 6677777777777888899999998888876
Q ss_pred C-CC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC--hhhHHHHHHHHHhcCCHHHHHHHH--------HHHH
Q 036072 308 Y-KF-KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN--LTTYTVLLGGWCRVKNLMEAGRVW--------NEMI 375 (631)
Q Consensus 308 ~-g~-~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~--------~~m~ 375 (631)
. |- ..+...+++....=.++..++.|..+|.-..+.++.+ ...|..+...=-+-|+.....+.. +.+.
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 4 21 1122334444444455677888888888777766555 456666665555666655554442 3333
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHH-----Hhhc-----------------
Q 036072 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN--VRSYTIMIWK-----FCKQ----------------- 431 (631)
Q Consensus 376 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~-----~~~~----------------- 431 (631)
.. -.-|-.+|--.++.--..|+.+...++|+..... +.|- ...|.-.|.. +...
T Consensus 316 ~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred Hh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33 2335566767777777789999999999988765 3331 1122222211 1100
Q ss_pred -----CHHHHHHH----HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036072 432 -----NAAVYTCL----ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502 (631)
Q Consensus 432 -----~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 502 (631)
...+|..+ ...-.++.++..|.+++.... |.-|-..+|...|..=.+.++++.+..+|++.++.+ +-|
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~ 470 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PEN 470 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHh
Confidence 22233333 333345677888888887654 556788899999999899999999999999999975 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
..+|......=...|+.+.|..+|+-.+... .......|.+.|+.=...|.++.|..+++++++.. +...+|-++..
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 7788888777778999999999999988753 33346678888888889999999999999999863 33335555544
Q ss_pred H
Q 036072 582 D 582 (631)
Q Consensus 582 ~ 582 (631)
-
T Consensus 549 f 549 (677)
T KOG1915|consen 549 F 549 (677)
T ss_pred H
Confidence 3
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.1e-07 Score=91.79 Aligned_cols=232 Identities=11% Similarity=0.037 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
--+-+.++|.+.|.+.+|.+.|+..++. .|-+.||-.|-++|.+..+...|+.++.+-.+.++-|+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3456777888888888888888777765 56677777778888888888888888887777766676666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
.++.++|.++|+...+. ...++.....+...|.-.++.+-|+.+|..+.+.|+. ++..|+.+.
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~----------------speLf~Nig 365 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ----------------SPELFCNIG 365 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC----------------ChHHHhhHH
Confidence 78888888888877765 2334555555666677778888888888888877765 455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
-+|.-.+++|-++.-|.+....--.|+ ...|-.+-......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|+
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCc
Confidence 667777778877777776654422232 2345555556667788888888887777654 3356677777777778888
Q ss_pred HHHHHHHHHHHHHc
Q 036072 519 YEMGRKVWDEMIRR 532 (631)
Q Consensus 519 ~~~A~~~~~~m~~~ 532 (631)
+++|..+++.....
T Consensus 445 i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 445 ILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHHHHHhhhh
Confidence 88888888877654
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2e-06 Score=89.28 Aligned_cols=285 Identities=14% Similarity=0.031 Sum_probs=182.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
+...|+.....-.+-+-..+++++..++.+...+..++....+..-|.++...|+..+-..+=..+.+.- +-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3445556666666666677778888888887777777766666666667777777777666666666653 455667777
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHHc
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--G-FKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g-~~p~~~ty~~li~~~~~~ 396 (631)
+..-|.-.|...+|.+.|.+...-.+.=...|-.+...|+-.+.-++|+..|....+. | ..|. --+---|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHh
Confidence 7766666677778877777754322222346777777777777777777777665543 2 1221 1122345566
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C--CCCCHHH
Q 036072 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----G--CPPDGLT 470 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~~~t 470 (631)
+..+.|.++|.+... +.|+ |+.+++-+.-...+.+.+.+|..+|....+. + ..-...+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~--------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPS--------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCC--------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 777777777776654 3444 3344444444455556777777777765421 0 1113445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
++.|-.+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.+- +.||..+-..++..+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 6777777777778888888777777653 45677777777777777888888777777664 356665555555533
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.9e-06 Score=86.47 Aligned_cols=342 Identities=11% Similarity=-0.012 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...+-..-.-|-++|.+++|++.|.+..+..+.-+..|.....+|...|+|+++++--...++.+ +.-+..+..-..++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 34455555667788999999999999988766546788888899999999999988887777754 22233444445566
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------HHH-c--CCCCCHHHHHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE--------MID-K--GFKPDVVAHNIMLEGL 393 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~--------m~~-~--g~~p~~~ty~~li~~~ 393 (631)
-..|++++|+.=. |-..++.++....-.-.+.++++. -.. + -+-|.....++....+
T Consensus 194 E~lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 194 EQLGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HhhccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 6667776664322 222333333333322333333322 122 1 1334544444444333
Q ss_pred HHc--------C-----CHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhhc-C------HHHHHHHHHHHhccCC
Q 036072 394 LKI--------G-----KRSDAIKLFEVMKAKGPSPN-----VRSYTIMIWKFCKQ-N------AAVYTCLITGFGNRRR 448 (631)
Q Consensus 394 ~~~--------g-----~~~~A~~ll~~m~~~g~~p~-----~~~~~~li~~~~~~-~------~~~~~~li~~~~~~g~ 448 (631)
-.. + ...++.+.+..-...|..-. ..++........+. | ..+...-...+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 210 1 12233333322221121100 00000000000000 1 1111111223344688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
...|..-|+..+.....++. .|--+..+|....+.++.++.|.+..+.+ +-|..+|..=.+.+.-.+++++|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998887555443 26667778999999999999999999865 44677788888888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 529 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+..... +...|-.+.-+..+.+++++++..|++.+.+ ++-.+..|+.....+...++++.|.+.++...+..
T Consensus 420 ai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 420 AISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9886433 5667777777777999999999999999887 56678899999999999999999999999876543
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.89 E-value=7.9e-07 Score=94.57 Aligned_cols=199 Identities=22% Similarity=0.188 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CcHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDK-----GFK-P-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----GPS-PNVR 419 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~-----g~~-p~~~ 419 (631)
.+...|...+++++|..+|+++... |-. | -..+++.|..+|++.|++++|...++...+- |.. |.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~-- 323 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE-- 323 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH--
Confidence 4666777778888888888777642 211 1 2346677777888888888888877766542 111 11
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 036072 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER---GCPPD----GLTYNALIKLMKIQKMPDEAVRIYK 492 (631)
Q Consensus 420 ~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~ 492 (631)
-...++.++..|+..+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.++|+
T Consensus 324 ------------v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 324 ------------VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred ------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1233556777888899999999999865432 12222 3589999999999999999999999
Q ss_pred HHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHH
Q 036072 493 EMVRS----GFK--P-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPD-DNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 493 ~m~~~----g~~--p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~A~~ 559 (631)
+++.. +.+ + ....++.|...|.+.+.+.+|.++|.+.... |. .|+ ..+|..|...|...|++++|.+
T Consensus 392 ~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 392 KAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 98742 122 1 2456788999999999999999999876542 32 223 4678999999999999999999
Q ss_pred HHHHHH
Q 036072 560 YLEEML 565 (631)
Q Consensus 560 ll~~m~ 565 (631)
+.+...
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 988776
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.89 E-value=7e-05 Score=79.22 Aligned_cols=142 Identities=3% Similarity=-0.043 Sum_probs=75.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (631)
+.++|.+.+-....-.+..+.-.+-...+.|......-.+ +-.-+.+.|..+--.+-...++++|++.|......+..
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 4455665544444333333332222222335444333211 11234567777766666777888888888888777666
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
+...+.-+.-.-++.++++........+.+.. +.....|..+..++.-.|+...|..+++...+
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555555555555555555442 22334444555555555556666655555543
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=8.9e-05 Score=78.22 Aligned_cols=348 Identities=12% Similarity=0.133 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC------CCCcCHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY------KFKAGVDTINCL 320 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~------g~~~~~~~~~~L 320 (631)
.|...+......+-.+.+..++++..+. ++..-+-.|..++..+++++|-+.+...... ..+.+...|.-+
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 3444444444555556666666665543 3444556677777888888888777766532 124555666666
Q ss_pred HHHHHcCCChH---HHHHHHHHHhcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 321 LENLGRSKLPK---EAQLLFDKLKHRFTPN-LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 321 l~~~~~~g~~~---~A~~l~~~m~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
.+..+++-+.- ....+++.+..+++.. -..|+.|.+.|.+.|.++.|.++|++.... ..+...|..+-++|+.-
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 66666554333 2334444444433322 247899999999999999999999988775 33455566666666642
Q ss_pred CC----------------------HHHHHHHHHHHHHcCC-----------CCcHHHHHHHHHH-----------Hhhc-
Q 036072 397 GK----------------------RSDAIKLFEVMKAKGP-----------SPNVRSYTIMIWK-----------FCKQ- 431 (631)
Q Consensus 397 g~----------------------~~~A~~ll~~m~~~g~-----------~p~~~~~~~li~~-----------~~~~- 431 (631)
.. ++-.+.-|+.+...+. ..++..|..-+.. |...
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHH
Confidence 21 1122222222222110 0011111111110 0000
Q ss_pred -----------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 432 -----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD---GLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 432 -----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
....|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++.+.....
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 334677788888889999999999988766433211 233444444445566777777777665421
Q ss_pred C----------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------------
Q 036072 498 G----------FKP-------TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC------------------------- 535 (631)
Q Consensus 498 g----------~~p-------~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------- 535 (631)
- -.| +...|..+++.--..|-++....+|+.+++..+.
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 011 2334455555555566777777777766654332
Q ss_pred ---------CCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 536 ---------PDD-NSYTVLIGGLIS---QDRSGEAYKYLEEMLEKGMKAPVLDY--NKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 536 ---------p~~-~t~~~li~~~~~---~g~~~~A~~ll~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
|++ ..|+..+.-+.+ .-..+.|..+|++.++ |.+|...-+ -.....=.+.|....|+.++++..
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 232 345555544443 2345677777777777 445443322 222222234566666777777654
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=9.3e-05 Score=74.23 Aligned_cols=294 Identities=13% Similarity=0.016 Sum_probs=196.2
Q ss_pred HHHHHccCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKY-KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~-g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
.+.+..++...|...+-.+... -++-++.....+.+++...|+.++|...|++...-.+.++.......-.+.+.|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 3334445555666665555433 346678888889999999999999999999877543334444444445556788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
....+...+.... .-+...|-.-...+...++++.|+.+-++..+. .|. . ...|-.-...+..
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r--~------------~~alilKG~lL~~ 346 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPR--N------------HEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--Ccc--c------------chHHHhccHHHHh
Confidence 8888888877642 122333333344455677888888888877653 222 1 1112122345666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH-cCCHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM-KSYFQ-TGNYEMGR 523 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li-~~~~~-~g~~~~A~ 523 (631)
.|++++|.--|+...... +-+...|..|+..|...|.+.+|..+-+...+. +..+..+...+. ..|.- .-.-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 788999988888876542 236788999999999999999888877666553 234555554442 33332 22346788
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 524 KVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 524 ~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
++++.-... .|+ ....+.+...|...|..++++.+++..+. ..||....+.|.+.+...+.+.+|++.|......
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 887776654 344 33456666777788999999999888776 3678888888999998888888888888776554
Q ss_pred C
Q 036072 603 G 603 (631)
Q Consensus 603 g 603 (631)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 4
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=2.4e-05 Score=81.78 Aligned_cols=202 Identities=10% Similarity=-0.013 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C-HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH--
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--S-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-- 319 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~-~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-- 319 (631)
...|..+...+...|+.+.+...+......... + .+........+...|++++|.+.++...+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345555666666667777766666665544332 2 2333344455667788888888888877653 334444432
Q ss_pred -HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 320 -LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 320 -Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
........+....+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11112223555555555554222233333445556677788888888888888888763 3345667777788888888
Q ss_pred HHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
+++|..+++........ ++.. ...|..+...+...|++++|..++++...
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~-------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLR-------------GHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchh-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888888877654221 1111 12234456667777888888888887653
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=8.8e-06 Score=79.71 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV-LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRA 586 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~-~~~li~~~~~~ 586 (631)
+.++++..|++.+|+++|-.+....++ |..+|.. |.++|.+.++++-|++++-++... .+..+ ...+.+.|.++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 455666667777777776655544333 4445443 345566666666666555433221 12222 33445666667
Q ss_pred CCHHHHHHHHHHHHhcC
Q 036072 587 GRSYVLDELAQKMRFSG 603 (631)
Q Consensus 587 g~~~~A~~l~~~m~~~g 603 (631)
+.+--|.+.|+.++..+
T Consensus 475 ~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHhhhHHHccC
Confidence 76666666666665544
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.3e-06 Score=84.74 Aligned_cols=281 Identities=12% Similarity=0.051 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+......-...+...+++.+..++++...+.. ++....+..=|.++...|+..+-..+=.++.+..|....+|.++.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 55566666777888899999999999998875 66667777777788899998888888888888888899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCcHHHHHHHHHHHhhcCHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK--GP-SPNVRSYTIMIWKFCKQNAA 434 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~--g~-~p~~~~~~~li~~~~~~~~~ 434 (631)
|.-.|...+|.+.|.+.....- .-...|-.+...|.-.|..|+|+..+...-+. |. .|...
T Consensus 322 Yl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--------------- 385 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--------------- 385 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH---------------
Confidence 9999999999999998775421 12456888889999999999999988766542 22 23221
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CC-CCHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----G-FK-PTIHTYNM 508 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~t~~~ 508 (631)
+.--|.+.+..+.|.++|.+.... .+-|+..++-+--.....+.+.+|..+|+..... + -+ -...+++.
T Consensus 386 ----lgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 386 ----LGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred ----HHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 223466778999999999987765 3346778888777777889999999999887731 1 11 24567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
|..+|.+.+.+++|+..++..+....+ |..+|.++.-.|...|+++.|.+.|.+.+. +.|+..+-..++..+
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999999999999886444 888999999889999999999999999876 467766655555533
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.6e-05 Score=77.08 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=186.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|...|..+....-++-|+.....+.+.+...|+..+|+..|+.....++.+..........+...|+.+....+...+.
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 36677776666667788888999999999999999999999999887776443333333344556777777777776665
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
... +-+...|..-.......+++..|+.+-++...-.+-++..|-.-...+...++.++|.-.|+...... +-+...|
T Consensus 294 ~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y 371 (564)
T KOG1174|consen 294 AKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIY 371 (564)
T ss_pred hhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHH
Confidence 532 23334444444455566788888888777655444456666666677888899999999998887642 2467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG-NRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~ 465 (631)
..|+.+|...|++.+|.-+-+...+. +..+..+.+.+ . + ..+. .-.--++|.++++.-.. +.
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~-g-----------~--~V~~~dp~~rEKAKkf~ek~L~--~~ 434 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF-G-----------T--LVLFPDPRMREKAKKFAEKSLK--IN 434 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh-c-----------c--eeeccCchhHHHHHHHHHhhhc--cC
Confidence 99999999999999888776655432 11122222111 0 0 0000 11123566666655433 23
Q ss_pred CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 466 PDG-LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 466 p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
|+- ...+.+...+...|..+.++.++++.... .||....+.|.+.+...+.+.+|+..|......
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 442 24455566677777777777777776653 567777777777777777777777777766654
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=2.4e-05 Score=81.86 Aligned_cols=303 Identities=12% Similarity=-0.013 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC-CcCH-HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGV-DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~-~~~~-~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
...|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|..++++..+..+.+...+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 34566666777777888887777766654321 2222 222222345567899999999999988766666656553 22
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 357 GWCR----VKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 357 ~~~~----~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
.+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.. |+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~-------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD-------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC--------------
Confidence 3333 4455555555554 1222333 3344456678889999999999999998853 44
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH-
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDG--LTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTY- 506 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~- 506 (631)
+...+..+...|...|++++|..++++..+... .++. ..|..+...+...|++++|..+++++..... .+.....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 334456677888899999999999998876532 2232 3455778889999999999999999865322 1222211
Q ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------C
Q 036072 507 N--MIMKSYFQTGNYEMGRKVWDEMIR---RGC--CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK--------A 571 (631)
Q Consensus 507 ~--~Li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~--------p 571 (631)
+ .++.-+...|....+.+. +.+.. ... ............++...|+.++|..+++.+...... .
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 1 233333444543333222 22211 111 111122235666778899999999999998763222 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..........++.+.|+.++|.+.+.....
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122233444556789999999998887654
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=0.00013 Score=77.36 Aligned_cols=329 Identities=16% Similarity=0.091 Sum_probs=222.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 254 ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 254 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
.+...|+-++|......-...++-+...|+.+.-.+....++++|++.|......+ +-|...+..|--.-++.++++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 35567899999999988888777788889999989999999999999999999886 66778888777777778888887
Q ss_pred HHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHH
Q 036072 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLE------GLLKIGKRSDAIKLF 406 (631)
Q Consensus 334 ~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~------~~~~~g~~~~A~~ll 406 (631)
...-..+.+-.+.....|..+..++.-.|++..|..++++..+.. -.|+...|..... ...+.|..++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 777777665545567789999999999999999999999998764 3566666654332 345678888888777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChh
Q 036072 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPD 485 (631)
Q Consensus 407 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~ 485 (631)
..-... ..|... .-..-...+.+.+++++|..++..+... .||..-|...+. ++.+-.+.-
T Consensus 209 ~~~e~~--i~Dkla--------------~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLA--------------FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HhhhhH--HHHHHH--------------HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 654332 111111 1122344556667777777777777665 244444433332 221111111
Q ss_pred HHH-HHH----------------------------------HHHHHCCC-------------------------------
Q 036072 486 EAV-RIY----------------------------------KEMVRSGF------------------------------- 499 (631)
Q Consensus 486 ~A~-~l~----------------------------------~~m~~~g~------------------------------- 499 (631)
++. .+| ..+.+.|+
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 111 111 11222221
Q ss_pred ---------------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 036072 500 ---------------KPTI--HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 500 ---------------~p~~--~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll 561 (631)
+|+. .|+..++..|-+.|+++.|..+.+..+.+ .|+. ..|..=.+.+...|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 2332 33455667777888888888888887764 3442 23444446677788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 562 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
++..+.+ .+|...=..-+.-..++.+.++|.+++.+....|.
T Consensus 429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8888775 55666555677777888888888888888877764
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.79 E-value=9.8e-06 Score=82.27 Aligned_cols=117 Identities=14% Similarity=-0.074 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 036072 259 RQFETMVSMLEEMGEKGLLS----METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334 (631)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~~----~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~ 334 (631)
++.+.++.-+.++......+ ...|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555433321 2235555555555566666666665555543 334555555555555566666666
Q ss_pred HHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 335 ~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
..|+...+..+.+..+|..+...+...|++++|.+.|+...+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555544333445555555555555566666555555554
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.4e-05 Score=79.25 Aligned_cols=371 Identities=12% Similarity=0.114 Sum_probs=219.5
Q ss_pred HHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCH
Q 036072 218 LERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295 (631)
Q Consensus 218 l~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~ 295 (631)
+.+..+..+ .|.+....+.. +++-|...+..=+-++.+.++|++|+.+.+.-..... ...-+--=..+..+.++.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccH
Confidence 444455443 36666655532 2233455566666677888889998855543221111 111111223344567889
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC----------------------------C
Q 036072 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP----------------------------N 347 (631)
Q Consensus 296 ~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p----------------------------~ 347 (631)
++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+...+ .
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99988887222 223335555556677899999999999998432111 1
Q ss_pred hhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 348 LTTYTVLL---GGWCRVKNLMEAGRVWNEMIDKG-------------FKPDVV-AHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 348 ~~~y~~Li---~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~-ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..+|..+. -.+...|++.+|+++++...+.+ ++-+.. .-..|...+-..|+.++|.+++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11333333 34556799999999998883211 111111 22334556677899999999999888
Q ss_pred HcCCCCcHHHHHHHHHH---Hhhc--------------------------------------------------------
Q 036072 411 AKGPSPNVRSYTIMIWK---FCKQ-------------------------------------------------------- 431 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~---~~~~-------------------------------------------------------- 431 (631)
+... +|.....+..+- +...
T Consensus 252 ~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7643 222111111100 0000
Q ss_pred -------CHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HH
Q 036072 432 -------NAAVYTCLITGFGN--RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK--------EM 494 (631)
Q Consensus 432 -------~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~--------~m 494 (631)
....+..++..+.+ ...+..+.+++...-+....-.....-.+++.....|+++.|.+++. .+
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 22233333333222 12355666666666554333234556667777888999999999998 55
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR--GCCPDDNS----YTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 495 ~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t----~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.+.+..| .+..+++..|.+.++-+.|..++.+.+.. .-.+.... +..+...-.+.|+.++|..+++++.+..
T Consensus 411 ~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 411 LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 5555555 45566777788888777777777776642 11122233 3333334447899999999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 569 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
++|..+...++.+|++. +.+.|+.+-+++.
T Consensus 489 -~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 489 -PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred -CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 67888899999999876 4677777766654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.71 E-value=1.3e-05 Score=81.31 Aligned_cols=203 Identities=11% Similarity=-0.074 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+-..+.+.|++++|...|++..+..+.+..+|+.+...+...|++++|++.|+...+.. +-+..+|..+..++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35677778889999999999999999999988889999999999999999999999999999875 44577888888899
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
...|++++|.+.|+...+..+.+.. .......+...++.++|...|.+.... ..++...+ . ......|+.+.+ +
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-H
Confidence 9999999999999998765444432 222233344567899999999776543 23333222 2 223345666554 3
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 036072 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463 (631)
Q Consensus 405 ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 463 (631)
.+..+.+. +.-+... . .....+|..+...+.+.|++++|...|++..+..
T Consensus 217 ~~~~~~~~-~~~~~~l-~-------~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 217 LMERLKAG-ATDNTEL-A-------ERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHhc-CCCcHHH-H-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55555432 1111110 0 0023456667777778888888888888777654
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.64 E-value=0.00012 Score=79.05 Aligned_cols=354 Identities=14% Similarity=0.058 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc-CHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA-GVDTINCLL 321 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~-~~~~~~~Ll 321 (631)
-|...|..+.=++.+.|+++.+.+.|++....-....+.|..+-..|...|.-..|+.+++......-.| +...+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3456666666666666666666666666554433344555555556666666555555555544332112 222222222
Q ss_pred HHHHc-CCChH--------------------------------------------------HHHHHHHHHhcccCCChhh
Q 036072 322 ENLGR-SKLPK--------------------------------------------------EAQLLFDKLKHRFTPNLTT 350 (631)
Q Consensus 322 ~~~~~-~g~~~--------------------------------------------------~A~~l~~~m~~~~~p~~~~ 350 (631)
..|.+ .+..+ ++.+.+++..+..+-|...
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 22221 12222 3333333333322234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------------
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPS-------------- 415 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~-g~~-------------- 415 (631)
..-+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 44444556677788888888888777655567777877777777788888888877765543 110
Q ss_pred ----CcHHHHHHHHHHHhhcCHHH-----HHHHHHHHh----ccCCHHHHHHHHHHH--------HHcC---------C-
Q 036072 416 ----PNVRSYTIMIWKFCKQNAAV-----YTCLITGFG----NRRRMDIVYDLLKEM--------EERG---------C- 464 (631)
Q Consensus 416 ----p~~~~~~~li~~~~~~~~~~-----~~~li~~~~----~~g~~~~A~~l~~~m--------~~~g---------~- 464 (631)
-...|...++..+-.. ..+ -..+...-. ...+..+|.+....+ ...| +
T Consensus 561 ~~~e~~l~t~~~~L~~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0011111111110000 000 000000000 000111111111111 0011 1
Q ss_pred -CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 036072 465 -PPD------GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537 (631)
Q Consensus 465 -~p~------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (631)
.|+ ...|......+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|......+.. +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence 122 2246666778889999999998888887653 445677777778888999999999999988875433 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 538 DNSYTVLIGGLISQDRSGEAYK--YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 538 ~~t~~~li~~~~~~g~~~~A~~--ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|-.+...+-+.|+.+.|.+.|.-.-
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 6778889999999999888887 999999987 5678889999999999999999999887543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.62 E-value=3.5e-05 Score=71.72 Aligned_cols=192 Identities=11% Similarity=-0.043 Sum_probs=86.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH
Q 036072 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364 (631)
Q Consensus 285 li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~ 364 (631)
|.-.|...|+...|.+-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+-.+-+-.+.|.....+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3444444555555555555544443 223334444444444555555555555544443333444455555555555555
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 036072 365 MEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443 (631)
Q Consensus 365 ~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~ 443 (631)
++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|+...+.. |+ .+.+.-.+....
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~--------------~~~~~l~~a~~~ 183 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQ--------------FPPALLELARLH 183 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cC--------------CChHHHHHHHHH
Confidence 55555555544321 11112344444444455555555555555544421 11 111222233333
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036072 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494 (631)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 494 (631)
.+.|++-.|..+++.....+. ++.......|..--..|+.+.+-++=..+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555554444433 44444444444444445544444433333
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=1.7e-06 Score=86.85 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=63.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. +.++..+.+.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 345555556666666666666543 122 222223333322 22466666666665443 3456666666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-GEAYKYLEEMLE 566 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~ll~~m~~ 566 (631)
..|++++|.+++.+..+.+.. |..+...+|.+....|+. +.+.+++.++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666554332 445555555555555555 455556666554
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=4.4e-05 Score=71.08 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
..|.-+|...|+...|..-+++..+.. +-+..+|..+...|.+.|+.+.|.+.|+...+. .|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~-------------- 101 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APN-------------- 101 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC--------------
Confidence 334444555555555555555554431 112334444455555555555555555555442 232
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
+..+.|...-.+|..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a 180 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELA 180 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHH
Confidence 33344444444555555555555555544431 11122345445445556666666666666666542 22234445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
....+.|++..|..+++.....+. ++..+.-..|+.-...|+.+.|.++=..+..
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666666666666666555443 5555555555555566666666555555444
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=3.7e-05 Score=73.85 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK-IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~-~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
+......+-..|-...++..|...++++....+ ...-|. --...+.+.+.+..|+.+...|... +....-..-+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLq 118 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQ 118 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHH
Confidence 344444555555555555556555555544322 111111 1233444555555555555555431 11111111111
Q ss_pred H--HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 323 N--LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 323 ~--~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+ ....+++..+..+++++... .+..+.+...-...+.|++++|.+-|+...+-|---....||..+..| +.|+.+
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qya 195 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYA 195 (459)
T ss_pred HHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHH
Confidence 1 12335555555555555421 133344444444456677777777777666643333445566555333 456677
Q ss_pred HHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC
Q 036072 401 DAIKLFEVMKAKGPSPNV----RSYTIMIWKFCKQNA---------AVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPP 466 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~----~~~~~li~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 466 (631)
.|+++..++.++|+.-.+ ..-+..++.-.-.++ ..+|.-...+.+.|+++.|.+-+-+|.-+ .-..
T Consensus 196 sALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~el 275 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 275 (459)
T ss_pred HHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccC
Confidence 777777777776654211 111111111000011 12222233344556666666666555422 2233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
|++|...+.-.= ..+++-...+-+.-+.+.+ +-...||..++-.||+..-++.|..++.+
T Consensus 276 DPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 276 DPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 444444332211 2233434444344444332 12345566666666666666666655543
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.5e-05 Score=76.36 Aligned_cols=326 Identities=12% Similarity=0.068 Sum_probs=212.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHc
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL-LENLGR 326 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L-l~~~~~ 326 (631)
+.+.+-.+.+..++++|++++..-.+..+.+....+.|..+|....++..|-+.++.+-.. -|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 5666777788889999999999888888878889999999999999999999999999876 4555555432 345567
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG--WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
.+.+..|+++...|.+. ++...-..-+.+ ....+++..+..+++++...| +..+.+.......+.|+++.|.+
T Consensus 91 A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred hcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 88899999999888764 222111111222 234578888888888876432 44444444455668899999999
Q ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--------------
Q 036072 405 LFEVMKAK-GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL-------------- 469 (631)
Q Consensus 405 ll~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 469 (631)
-|+...+- |..|- ..||..+ +..+.|+++.|++...++.++|++-.+.
T Consensus 166 kFqaAlqvsGyqpl----------------lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs 228 (459)
T KOG4340|consen 166 KFQAALQVSGYQPL----------------LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS 228 (459)
T ss_pred HHHHHHhhcCCCch----------------hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence 99887764 45432 3455544 4445679999999999999998763111
Q ss_pred -------HHHHHHH-------HHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036072 470 -------TYNALIK-------LMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534 (631)
Q Consensus 470 -------t~~~li~-------~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (631)
.-+.++. .+.+.++++.|.+-+.+|-- .....|..|...+.-.- ..+++.+..+-+.-+...+.
T Consensus 229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence 1123333 34567788888887777752 22234556654432221 23445555555666666544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 036072 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAPVLDYNKFAADL-SRAGRSYVLDELAQKMR 600 (631)
Q Consensus 535 ~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~ 600 (631)
. ...||..++-.||+..-++-|-+++-+-...-+ -.+...|+. +.++ ...-..++|.+-++.+.
T Consensus 308 f-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 F-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 3 466788888888888888888887765333211 122333433 3343 34455677776666554
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.54 E-value=5.5e-06 Score=83.16 Aligned_cols=253 Identities=10% Similarity=0.051 Sum_probs=166.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
+-+--.|++..++.-.+ ...... ........+.+++...|+.+.++ .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445688888776555 222222 23446677889999999877544 3443333 566666655554443334444
Q ss_pred HHHHHHHHHh-cccC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 332 EAQLLFDKLK-HRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 332 ~A~~l~~~m~-~~~~-p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
.+..-+++.. +... .+..........+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554444433 2222 23333333345667789999999988653 36677788899999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 036072 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489 (631)
Q Consensus 410 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 489 (631)
.+. ..|....+ + ..+++..+.....+.+|..+|+++.++ ..++..+.+.+..+....|++++|.+
T Consensus 158 ~~~--~eD~~l~q-L-----------a~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 158 QQI--DEDSILTQ-L-----------AEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HCC--SCCHHHHH-H-----------HHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred Hhc--CCcHHHHH-H-----------HHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 874 34433222 1 233455555556899999999998775 56788999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 036072 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNY-EMGRKVWDEMIRR 532 (631)
Q Consensus 490 l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~-~~A~~~~~~m~~~ 532 (631)
++.+..+.. .-+..+...++.+....|+. +.+.+++.++...
T Consensus 223 ~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 223 LLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999987654 33567777788888888887 7788888888764
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=0.0014 Score=69.52 Aligned_cols=305 Identities=12% Similarity=0.130 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc----------------------CHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK----------------------ERKKAVAIF 302 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g----------------------~~~~A~~v~ 302 (631)
...|++|.+-|.+.|.++.|.++|++....- .+..-|..+.++|+.-. +++-....|
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 3579999999999999999999999877652 23333444444443321 122233334
Q ss_pred HHHHhCCC-----------CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC------hhhHHHHHHHHHhcCCHH
Q 036072 303 ELMNKYKF-----------KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN------LTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 303 ~~m~~~g~-----------~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~------~~~y~~Li~~~~~~g~~~ 365 (631)
+.+..... +-++..|..-+.. ..|+..+-...+.+....+.|. ...|..+.+.|-..|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 44433220 1222333322222 2456666777777765544332 246888999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCcHHHHHHHHHHHhhc
Q 036072 366 EAGRVWNEMIDKGFKPD---VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-----------SPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-----------~p~~~~~~~li~~~~~~ 431 (631)
.|..+|++..+-..+-- ..+|.....+=.+..+++.|+++++......- .+....++
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr--------- 475 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR--------- 475 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH---------
Confidence 99999999887543322 34455555555667788889888877653211 11122222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI-HTYNMIM 510 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Li 510 (631)
+..+|...+...-..|-++....+++.+.+..+. ++.+.......+-.+.-++++.++|++-+..=-.|+. ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 3455666666666666777777777777765543 2222111122233445566666666654443222332 3445444
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 036072 511 KSYFQ---TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG--LISQDRSGEAYKYLEE 563 (631)
Q Consensus 511 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~ll~~ 563 (631)
.-+.+ .-.++.|..+|++.++ |++|...-+--|+-+ =.+.|-...|+.++++
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44433 1246666666666666 444433222111111 1134555555555554
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.0022 Score=66.91 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 484 PDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 484 ~~~A~~l~~~m~~~-g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
.+....+++++... ...|+ .+|..+|+.-.+..-+..|..+|.+..+.+..+ ++..+++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 34444455554432 22232 345555665556666666666666666655444 55556666655543 5556666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 562 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+-=+.. +.-++.--...++-+...++-..|..+|++...+
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 544332 1222233344555555555555555555555554
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=2.6e-07 Score=59.84 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 378 g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00048 Score=76.10 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-L--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
-|+......+.++...+-..+.+++++++.-.+. . +....+.||-...+. +..++.+..+++.... .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------
Confidence 3566666778888888888888888888765544 2 333455555444443 3345555555555443 122
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcc----------------------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHR----------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~----------------------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+...+..++.+++|..+|+...-. --.....|..+..+-.+.|.+.+|.+-|-+..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad-- 1131 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD-- 1131 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC--
Confidence 112222333334444444332110 00134567777777777777777766654322
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH
Q 036072 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419 (631)
Q Consensus 378 g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~ 419 (631)
|...|.-+++...+.|.+++-.+++....+....|.+.
T Consensus 1132 ----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1132 ----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred ----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 55667788888888888888888777666665555543
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.001 Score=78.80 Aligned_cols=333 Identities=11% Similarity=-0.030 Sum_probs=203.3
Q ss_pred hcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC------CcC--HHHHHHHHHHHHcC
Q 036072 257 RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF------KAG--VDTINCLLENLGRS 327 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~------~~~--~~~~~~Ll~~~~~~ 327 (631)
..|+++.+...++.+..... .++.........+...|+++++..++....+.-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34555555555544421111 1222333444555677899999988887754310 111 11222233455678
Q ss_pred CChHHHHHHHHHHhcccCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcC
Q 036072 328 KLPKEAQLLFDKLKHRFTP-N----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK----GF-KPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p-~----~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~ty~~li~~~~~~g 397 (631)
|++++|...+++..+..+. + ....+.+...+...|++++|...+++.... |- .....++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999886543221 1 124566667778899999999999887743 11 111234555667788899
Q ss_pred CHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCC--CHH
Q 036072 398 KRSDAIKLFEVMKAK----GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPP--DGL 469 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~----g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~ 469 (631)
++++|...+++.... +.. +... ....+..+...+...|++++|...+.+.... ...+ ...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~-~~~~-----------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLE-QLPM-----------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccc-cccH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 999999998876652 111 1000 0112333455666779999999999887542 1112 233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSG--FKPTIH--T-Y-NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD---DNS 540 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~--t-~-~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t 540 (631)
.+..+...+...|+.++|.+.+..+.... ...... . . ...+..+...|+.+.|...+........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 44556667888999999999998876421 111111 1 0 1122445568899999998877654221111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
+..+..++...|+.++|...+++.... |...+ ..++..+..++.+.|+.++|...+.+...
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667788899999999999988653 32222 24566778888999999999998887755
No 92
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00082 Score=66.27 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=170.4
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH-------
Q 036072 293 KERKKAVAIFELMNKYKFKAGVDTINCL-LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL------- 364 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~~~~~L-l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~------- 364 (631)
-.+++|++++......+ |.-...|.- .-+|.+..-++-+.+++......++.+....|.......+.=+-
T Consensus 165 ~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 34567777777666542 344444432 33455666666666666665555555555555444433332111
Q ss_pred ----------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 036072 365 ----------------------------MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416 (631)
Q Consensus 365 ----------------------------~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 416 (631)
+.|++++-.+.+. -+.+...|+-.|.+.+++.+|..+.+++.- ..|
T Consensus 243 k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP 316 (557)
T KOG3785|consen 243 KELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP 316 (557)
T ss_pred HHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CCh
Confidence 1222222222211 112333455567788888888887776531 223
Q ss_pred cHHHHHHHHHHHhhc--------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 417 NVRSYTIMIWKFCKQ--------------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470 (631)
Q Consensus 417 ~~~~~~~li~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 470 (631)
-......++.+.... +..--.++...+.-..++++++-.+..++.--..-|...
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 333222222221111 111122333344444466777766666655433333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY-TVLIGGLI 549 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~ 549 (631)
| .+.++++..|.+.+|+++|-.+....++-+..-...|.++|.+++..+.|+.++-++.. ..+..+. ..+.+-|.
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 3 36788889999999999998877665554444456777889999999988777655533 2233333 33445677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCC----HHHHHHHHHHHHhcCC---CchHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVLDY-------NKFAADLSRAGR----SYVLDELAQKMRFSGK---FEVSNVLARWA 615 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~~~-------~~li~~~~~~g~----~~~A~~l~~~m~~~g~---~~~~~~l~~~~ 615 (631)
+.+.+--|-+.|+++...+ |++..| .-+...++.... .....+++.-++.++. ..+-.++..|.
T Consensus 473 k~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILD--PTPENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred HHHHHHHHHHhhhHHHccC--CCccccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 8888888888888877654 444443 234444443322 2334445444444443 34556666887
Q ss_pred Hhhhh
Q 036072 616 ETTKN 620 (631)
Q Consensus 616 ~~~k~ 620 (631)
+.-+.
T Consensus 551 ~~~~v 555 (557)
T KOG3785|consen 551 ETHNV 555 (557)
T ss_pred HhcCC
Confidence 75443
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.4e-07 Score=59.33 Aligned_cols=32 Identities=41% Similarity=0.775 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=0.00017 Score=82.24 Aligned_cols=224 Identities=9% Similarity=0.013 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-----NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p-----~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 387 (631)
+...|-..|......++.++|.+++++....+.+ -..+|.++++.-...|.-+...++|++..+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3444555555555566666666666655433211 12345555555555555556666666655531 1123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP- 466 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 466 (631)
.|...|.+.+.+++|.++|+.|.+. +.- ...+|...+..+.++.+-+.|..++.+..+.=.+-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q---------------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQ---------------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcc---------------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 5666666666666666666666554 111 22334444555555555566666665554431110
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD--NSYTVL 544 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 544 (631)
......-.+..-.+.|+.+.+..+|+.....- +--...|+.++++=.++|+.+.+..+|++.+..++.|-. ..|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 12233334444456667777777776666542 223456666677666777777777777777666655442 344555
Q ss_pred HHHHHHcCCHH
Q 036072 545 IGGLISQDRSG 555 (631)
Q Consensus 545 i~~~~~~g~~~ 555 (631)
+..=-++|+-+
T Consensus 1678 LeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1678 LEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCchh
Confidence 54444445543
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.0009 Score=79.31 Aligned_cols=305 Identities=10% Similarity=-0.003 Sum_probs=186.0
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC-------CCh--hhHHHHHHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-------PNL--TTYTVLLGG 357 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~-------p~~--~~y~~Li~~ 357 (631)
......|+++.+..+++.+.......+..........+...|++++|..++........ +.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 33445577777666666552211111222233344455677999999998887654211 111 122233455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~ 433 (631)
+...|++++|...+++..+.--..+ ....+.+...+...|++++|...+.+........... +. ..
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~-~~---------~~ 531 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY-HY---------AL 531 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch-HH---------HH
Confidence 6688999999999998876311112 1344556667788999999999998887531111100 00 01
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC--C
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEER----GCP--P-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GFKP--T 502 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~ 502 (631)
.++..+...+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+ .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 23345566778899999999998876542 221 1 2234455556677889999999999887652 1112 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---H
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSY-----TVLIGGLISQDRSGEAYKYLEEMLEKGMKAP---V 573 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~---~ 573 (631)
...+..+...+...|++++|...++........ .....+ ...+..+...|+.+.|..++........... .
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555667788899999999999887642110 011111 1122344568999999999877654321111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 574 LDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..+..+..++...|+.++|..++++...
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1245677888999999999999887754
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=0.00027 Score=80.71 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=179.4
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP---DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p---~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
+++....+.+...|-..|......++.++|.++.++.... +++- -...|.++++.-..-|.-+...++|+++.+.
T Consensus 1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence 3333334456678999999999999999999999998754 1211 1345667777777778888889999988764
Q ss_pred CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036072 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493 (631)
Q Consensus 414 ~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 493 (631)
+ | .-.+|..|...|.+.+..++|.++|+.|.++- .-....|...+..+.+..+-+.|..++.+
T Consensus 1527 c--d--------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1527 C--D--------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred c--c--------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 1 12356778888999999999999999998762 24667888899999999999999999999
Q ss_pred HHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 494 MVRSGFK-PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 494 m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
..+.=-+ -......-.+..-.+.|+.+.+..+|+.....-.+ -...|+.+|+.-.++|+.+.+..+|++....++.|-
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8874111 12444555566667899999999999998876433 567899999999999999999999999999988775
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHH
Q 036072 573 VL--DYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 573 ~~--~~~~li~~~~~~g~~~~A~~l 595 (631)
.. .|..++..-...|+-+.++.+
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHH
Confidence 43 366666666666775554443
No 97
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=0.00046 Score=70.27 Aligned_cols=215 Identities=7% Similarity=0.004 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
++..+-.++...++.++|+.+.+++.+..+-+..+|+.--.++...| ++++++..++.+.+.. +-+..+|+.-.-.+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 34444555566778889999999988887777777776666666667 5788999998888765 445556765544455
Q ss_pred cCCC--hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH-
Q 036072 326 RSKL--PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI---GKR- 399 (631)
Q Consensus 326 ~~g~--~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~- 399 (631)
+.|. .+++..+++.+.+..+-|..+|+...-.+...|+++++++.++++.+.... |..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5554 266788888887766778889998888888899999999999999987544 556666655555443 222
Q ss_pred ---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 400 ---SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEMEERGCPPDGLTYN 472 (631)
Q Consensus 400 ---~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 472 (631)
+++++....+... .|+ +..+|+-+...+.. .+...+|.+.+.+..+.++ .+.....
T Consensus 197 ~~~e~el~y~~~aI~~--~P~--------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~ 259 (320)
T PLN02789 197 AMRDSELKYTIDAILA--NPR--------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALS 259 (320)
T ss_pred ccHHHHHHHHHHHHHh--CCC--------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHH
Confidence 3455555555443 233 33344444444444 1334456666666554332 2455566
Q ss_pred HHHHHHHh
Q 036072 473 ALIKLMKI 480 (631)
Q Consensus 473 ~li~~~~~ 480 (631)
.|+..|+.
T Consensus 260 ~l~d~~~~ 267 (320)
T PLN02789 260 DLLDLLCE 267 (320)
T ss_pred HHHHHHHh
Confidence 66666654
No 98
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0042 Score=68.53 Aligned_cols=211 Identities=16% Similarity=0.090 Sum_probs=114.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcc-CchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRH-ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~-~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (631)
+...|++.+..+....+.+ |..++. ..+.|....+-...-.+ .|..|...+-..|.+.++.++|..+|++.....+
T Consensus 32 ~~kllkk~Pn~~~a~vLka-Lsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKA-LSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHCCCcHHHHHHHH-HHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 4455555554433333332 222222 22347766665533222 2788888888889999999999999988887755
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC----------ChHHHHHHHHHHhccc-C
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK----------LPKEAQLLFDKLKHRF-T 345 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g----------~~~~A~~l~~~m~~~~-~ 345 (631)
- .+....+..+|.+.+.+.+-.++--+|-+. ++-....+=+++..+...- -..-|.+.++.+.+.- +
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 4 666777777888887776655544444332 2344555555555544321 1223444555543321 1
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 346 -PNLTTYTVLLGGWCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 346 -p~~~~y~~Li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
-+..-.......+...|.+++|++++ ....+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 11122223334445667788888877 333333222233333444555555666666666655555544
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.0001 Score=77.14 Aligned_cols=263 Identities=16% Similarity=0.108 Sum_probs=187.7
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 401 (631)
.-+.+.|++.+|.-.|+......+-+...|--|.......++-..|+..+.+..+.. .-|....-.|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 345678999999999998887777788899999999999999999999999988852 2256667777788888888889
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 036072 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME-ERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 402 A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~ 480 (631)
|+.+++......+. |..+..+ ..+...-+. ..+.....+....++|-++. +.+..+|......|--.|.-
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a--~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSA--GENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcccc--CccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99999887654211 0000000 000000000 01111123455566665554 55655788888888888999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ 559 (631)
.|++++|.+.|+.++... +-|..+||.|...++...+.++|+..|++.++. +|+ +.+...|.-+|...|.+++|.+
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999999863 446789999999999999999999999999875 455 3344456667899999999999
Q ss_pred HHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 560 YLEEMLEK---------GMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 560 ll~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
.|-+.+.. +..++...|.+|=.++...++.|.+.+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 88776532 112234678888888888888886666543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=9.6e-05 Score=72.35 Aligned_cols=171 Identities=11% Similarity=0.029 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cC-HHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM---ETFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AG-VDT 316 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~-~~~ 316 (631)
......+-.+...+...|+++.|...|+++....+.++ .++..+..++...|++++|+..++.+.+..-. +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34567788888889999999999999999988766443 57788889999999999999999999876421 11 124
Q ss_pred HHHHHHHHHcC--------CChHHHHHHHHHHhcccCCChhhH-----------------HHHHHHHHhcCCHHHHHHHH
Q 036072 317 INCLLENLGRS--------KLPKEAQLLFDKLKHRFTPNLTTY-----------------TVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 317 ~~~Ll~~~~~~--------g~~~~A~~l~~~m~~~~~p~~~~y-----------------~~Li~~~~~~g~~~~A~~l~ 371 (631)
+..+..++... |+.++|.+.|+.+....+.+...+ ..+...|.+.|++++|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 55555555544 778899999999876554444332 13456788899999999999
Q ss_pred HHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 372 NEMIDKGF--KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 372 ~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+...+... ......+..+..++.+.|++++|..+++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99987621 223568889999999999999999999888764
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00014 Score=76.25 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=75.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQT 516 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~~ 516 (631)
.|.-.|--.|++++|.+.|+........ |..+||-|-..++...+.++|+..|.+.++. +|+ +.....|.-+|...
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhh
Confidence 3444455556777777777776654322 5667777777777777777787777777764 454 23334455567777
Q ss_pred CCHHHHHHHHHHHHH---c------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIR---R------GCCPDDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 517 g~~~~A~~~~~~m~~---~------g~~p~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
|.+++|.+.|-..+. + +..++...|.+|=.++.-.++.+-+...
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 777777776665443 1 1223456777777667766766644443
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0071 Score=63.87 Aligned_cols=222 Identities=12% Similarity=0.119 Sum_probs=137.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH--HHHHH-
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC--LLENL- 324 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~--Ll~~~- 324 (631)
.-+=++.+...+++++|......+...++.+..++..=+-+..+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 334566677889999999999999998877888999999999999999999965543321 112222 23444
Q ss_pred -HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 325 -GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 325 -~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
.+.+..++|...++..... +..+...-...+.+.+++++|.++|+.+.+++.. .+...+.+-+.. ...+.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a--~~a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA--VAAAL 159 (652)
T ss_pred HHHcccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--HHHhh
Confidence 4678999999998844332 4456666778899999999999999999887432 233333221110 00111
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCCH------H-
Q 036072 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-------GCPPDG------L- 469 (631)
Q Consensus 404 ~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~------~- 469 (631)
.. ..|......| ..+|..+.+. .-.+...|++.+|+++++..... +-.-+. .
T Consensus 160 ~~-~~~q~v~~v~-e~syel~yN~------------Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 160 QV-QLLQSVPEVP-EDSYELLYNT------------ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred hH-HHHHhccCCC-cchHHHHHHH------------HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 11 1233322333 3344443322 23455678888888888776211 100001 0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
+-.-|.-++-..|+.++|..+|...++..
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 11223335667788888888888777654
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00064 Score=77.08 Aligned_cols=241 Identities=9% Similarity=0.135 Sum_probs=147.8
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 241 FAH-NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 241 ~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
+.| +...|..|+..+...+++++|.++.+...+..+-....|-.+...+...++...+.-+ .
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 443 4678999999999999999999999988877765555555555577777776555444 2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+++......++.....+...|.+ ..-+...+..+..+|-+.|+.++|..+|+++.+.. .-|..+.|.+...|... ++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333334444344444444443 23345577778888888888888888888888765 44677788888888888 88
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
++|.+++...... |...+++..+.+++.++...... +
T Consensus 166 ~KA~~m~~KAV~~------------------------------~i~~kq~~~~~e~W~k~~~~~~~-d------------ 202 (906)
T PRK14720 166 EKAITYLKKAIYR------------------------------FIKKKQYVGIEEIWSKLVHYNSD-D------------ 202 (906)
T ss_pred HHHHHHHHHHHHH------------------------------HHhhhcchHHHHHHHHHHhcCcc-c------------
Confidence 8888888776442 33335666667777666654211 1
Q ss_pred hcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
++.-.++.+.+... |..--..++-.+-..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 203 ----~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 203 ----FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12222222222221 22223344455555566666666666666666665433 4444555555544
No 104
>PLN02789 farnesyltranstransferase
Probab=98.24 E-value=0.00095 Score=68.02 Aligned_cols=213 Identities=8% Similarity=-0.029 Sum_probs=143.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc
Q 036072 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 283 ~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~ 361 (631)
..+-..+...+..++|+.+.+.+++.. +-+..+|+.--.++...| .+++++..++++.+..+.+..+|+.....+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 333344445677889999999988864 445556666555666666 679999999998877777777888776666667
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH
Q 036072 362 KNL--MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439 (631)
Q Consensus 362 g~~--~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l 439 (631)
|+. ++++.+++.+.+... -|..+|+...-++...|+++++++.++++.+.... + ..+|+..
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N---------------~sAW~~R 182 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-N---------------NSAWNQR 182 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-c---------------hhHHHHH
Confidence 753 778999989987643 37788988888888999999999999999987544 2 2223332
Q ss_pred HHHHhcc---CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 440 ITGFGNR---RR----MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ----KMPDEAVRIYKEMVRSGFKPTIHTYNM 508 (631)
Q Consensus 440 i~~~~~~---g~----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ 508 (631)
...+.+. |. .++++++..++..... -|...|+.+...+... +...+|...+.+..+.+ ..+......
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~ 260 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSD 260 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHH
Confidence 2222222 22 3456666666665533 3566777777777662 33455777777766543 335666777
Q ss_pred HHHHHHH
Q 036072 509 IMKSYFQ 515 (631)
Q Consensus 509 Li~~~~~ 515 (631)
|++.|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 7777764
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.006 Score=67.88 Aligned_cols=311 Identities=13% Similarity=0.128 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTIN 318 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~ 318 (631)
|...|+.++.- .-..-..+++.....+++ +++..+..+.++...+-..+.+++++.+.-.. +.-+...-|
T Consensus 951 D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 951 DPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred ChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 46777766632 112234567777777663 88899999999999999999999999987432 222333334
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 319 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
.|+-... .-+.....+..+++..-..|++ ...+...+-+++|..+|+... .+..+.+.||.- .+.
T Consensus 1026 LLiLtAi-kad~trVm~YI~rLdnyDa~~i------a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ 1090 (1666)
T KOG0985|consen 1026 LLILTAI-KADRTRVMEYINRLDNYDAPDI------AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGS 1090 (1666)
T ss_pred hHHHHHh-hcChHHHHHHHHHhccCCchhH------HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhh
Confidence 4444433 4456677777777765434443 344556677888888887653 244445555542 244
Q ss_pred HHHHHHHHHHHH-------------HcCCCCcHHHHHHHHHHHhhc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 399 RSDAIKLFEVMK-------------AKGPSPNVRSYTIMIWKFCKQ-NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 399 ~~~A~~ll~~m~-------------~~g~~p~~~~~~~li~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
.+.|.++-+... +.|..|+ .|.+|.+. |+..|..++....+.|.+++-.+++...+++.-
T Consensus 1091 ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d------AieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1091 LDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD------AIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCchHH------HHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 555554443321 1111111 23333333 666777778888888888888888777776655
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 465 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
.|... +.||-+|++.+++.+.++++. .||......+.+-|...+.++.|.-+|. +..-|..|
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKL 1226 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHH
Confidence 55443 467778888887766555442 4566666666666666666666655554 23334455
Q ss_pred HHHHHHcCCHHHHHHHHHH------------------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 545 IGGLISQDRSGEAYKYLEE------------------------MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~------------------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
...+...|+++.|.+.-++ |-...+........-++..|-..|-+++.+.+++-
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555555554433222 22222223344456666777777777776666653
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.21 E-value=0.00039 Score=68.01 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGC-CP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+...|.+.|++++|...++...+... .| ....+..+..++...|++++|.++++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555666666666665554311 11 234555555666666666666665555543
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00031 Score=76.03 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
+...|.-+...+-..|+++.|+.+|...++ |-+++...|-.|+.++|-++-++- -|......|.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 555666677777788999999999987665 556777788899999999887652 25667778899
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD---------------RSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---------------~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
.|-..|++.+|..+|.+... |...|+.|-.++ +.-.|-.+|++. |. .+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~ 1038 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YA 1038 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hh
Confidence 99999999999999987643 333333332222 222233333332 21 23
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 036072 577 NKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~ 596 (631)
...+..|-++|.+.+|+++.
T Consensus 1039 ~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHH
Confidence 45567778888888877764
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.0057 Score=63.94 Aligned_cols=351 Identities=15% Similarity=0.109 Sum_probs=200.0
Q ss_pred hhHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 226 RPAFRFFCWAG-DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 226 ~~A~~~f~~~~-~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
..|...|.... -.+ +|-+.|..-..+|+..|+|++|++=-.+-.+..+.=+..|+....++.-.|++++|+..|.+
T Consensus 19 ~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred HHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 45788776543 233 37788999999999999999998877777777665567999999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH------HHhc----ccCCChhhHHHHHHHHHhc----------CCH
Q 036072 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD------KLKH----RFTPNLTTYTVLLGGWCRV----------KNL 364 (631)
Q Consensus 305 m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~------~m~~----~~~p~~~~y~~Li~~~~~~----------g~~ 364 (631)
-++.. +.+...++.+..++... . .+.+.|. .+.. +.......|..++..+-+. .++
T Consensus 96 GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 96 GLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 98874 55666777787777211 0 0111111 1110 0011122333333332221 111
Q ss_pred HHHHHHHHHH-----HHcC-------CCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 365 MEAGRVWNEM-----IDKG-------FKPD----------------------VVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 365 ~~A~~l~~~m-----~~~g-------~~p~----------------------~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..|...+... ...| ..|. ..-+..+.++..+..+++.|++-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222211110 0001 1110 1123344455555566666666665554
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCC
Q 036072 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA-------LIKLMKIQKM 483 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-------li~~~~~~g~ 483 (631)
+.. . +..-++....+|...|.+.++...-..-.+.|-. ...-|+. +-.+|.+.++
T Consensus 252 el~---~--------------~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 252 ELA---T--------------DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hHh---h--------------hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 432 2 2223344455566666666555555554444322 1112222 2234555667
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 484 PDEAVRIYKEMVRSGFKPTIHTY-------------------------NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538 (631)
Q Consensus 484 ~~~A~~l~~~m~~~g~~p~~~t~-------------------------~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (631)
++.|+..|.+.......|+..+- ..-...+.+.|++..|++.|.++++.... |.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DA 392 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hh
Confidence 77777777776654333332221 11234466778888888888888877633 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
..|..-.-+|.+.|.+..|++-.+..++.. ++...-|..=..++....+++.|++.|.+-.+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888777777652 2222234444445555556777777776665544
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.18 E-value=0.009 Score=58.99 Aligned_cols=301 Identities=11% Similarity=0.034 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-LLENL 324 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-Ll~~~ 324 (631)
.-.--+-+.+...|++.+|+.-|....+.++.+-.++-.-...|...|+-..|+.=+...++. +||...-.. -...+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 333345666777899999999999888876655555555667788889888888888888876 566543221 23456
Q ss_pred HcCCChHHHHHHHHHHhcccCC-------------Chhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTP-------------NLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p-------------~~~~--y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
.+.|.++.|..=|+.+.+..+. .... ....+..+.-.|+...|+..+..+.+.. .-|...|..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 7889999999999887653221 1111 1223444555677777777777777642 2355566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
..+|...|++..|+.=+...-+. ..| +...+-.+-..+...|+.+.++...++..+. .||..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askL--s~D--------------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKL--SQD--------------NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhc--ccc--------------chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 67777777777777655544332 222 4445556666777777777777777776553 34432
Q ss_pred H----HHHH---H------HHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 470 T----YNAL---I------KLMKIQKMPDEAVRIYKEMVRSGFKPT---IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 470 t----~~~l---i------~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g 533 (631)
. |-.| . ......+++.++++-.+...+..-.-. ...+..+-.++...|++.+|++...+.++..
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 1 1111 1 112334455555555555554321111 1223344555556666777777666666542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 534 ~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.. |+.++.--..+|.-...+++|+.-|+...+.+
T Consensus 338 ~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 338 PD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 11 35666666666666666777777666666543
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00016 Score=68.83 Aligned_cols=158 Identities=10% Similarity=-0.049 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
...-..+--.|+-+....+..........+....+..+....+.|++..|+..|.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3444555555666666666665555545566666667777777777777777777777655 667777777777777777
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
+.+.|..-|.+..+-..-+...+|.|...|.-.|+++.|..++......+.. |...-..+.......|++++|..+...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777776655556667777777777777777777777777765432 455555666667777777777776544
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.0012 Score=71.08 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..-..+...+...|-...|+.+|+++. .|..+|.+|+..|+..+|..+..+..+ -+|+...|..+.+...
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 455667788888999999999998764 466788899999999999998888777 5788899999998888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l 439 (631)
.---+++|+++.+....+ +-..+.......++++++.+.|+.-.+...- ...+|-.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl----------------q~~~wf~~ 525 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL----------------QLGTWFGL 525 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc----------------chhHHHhc
Confidence 888889999998876543 1111222223468899999988876654211 23455556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
.-+..+.+++..|.+.|.....- .| +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 66677889999999999887764 34 46789999999999999999999999999877 4456667777778889999
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~ 550 (631)
+++|.+.+..+.+.. ..-|......++....+
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 999999999887531 11255555555555443
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.16 E-value=0.021 Score=62.33 Aligned_cols=343 Identities=13% Similarity=0.037 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCChhhHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVL 354 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~~~~y~~L 354 (631)
.+..+|..+.-+....|+++.+.+.|+.....- --..+.|+.+-..|...|.-..|..+++.-... .++++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 367788888899999999999999999987654 345677888888899999999999998875432 24455555555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHc-CCCCc
Q 036072 355 LGGWCR-VKNLMEAGRVWNEMIDK--GF--KPDVVAHNIMLEGLLKI-----------GKRSDAIKLFEVMKAK-GPSPN 417 (631)
Q Consensus 355 i~~~~~-~g~~~~A~~l~~~m~~~--g~--~p~~~ty~~li~~~~~~-----------g~~~~A~~ll~~m~~~-g~~p~ 417 (631)
-..|.+ .+.+++++++-.+..+. |. ......|..+--+|... ....++++.+++..+. +-.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 555544 36777777777666652 11 11233344444344321 1245778888887765 35577
Q ss_pred HHHHHHHHHHHhhc------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CC--------------
Q 036072 418 VRSYTIMIWKFCKQ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GC-------------- 464 (631)
Q Consensus 418 ~~~~~~li~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-------------- 464 (631)
+..|-.+-.+..+. +...|.-|.-.+.-.+++.+|+.+.+...+. |.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 77776665554443 6778888888888889999999988765432 21
Q ss_pred ----CCCHHHHHHHHHHHHh---------cC--------------ChhHHHHHHHHHH--------HCC---------CC
Q 036072 465 ----PPDGLTYNALIKLMKI---------QK--------------MPDEAVRIYKEMV--------RSG---------FK 500 (631)
Q Consensus 465 ----~p~~~t~~~li~~~~~---------~g--------------~~~~A~~l~~~m~--------~~g---------~~ 500 (631)
.-...|...++..+-. .| +..+|......+. ..| +.
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0011223333332220 00 1111111111110 011 01
Q ss_pred --CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 501 --PT------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 501 --p~------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
|+ ...|......+.+.++.++|...+.+..... .-....|......+...|+.++|.+.|......+ +-+
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDH 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCC
Confidence 22 2345667777888899999987777776642 2356677777777888999999999999998754 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCchHHHHHHHHHhhhhhhh
Q 036072 573 VLDYNKFAADLSRAGRSYVLDE--LAQKMRFSGKFEVSNVLARWAETTKNRVY 623 (631)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~~~~~~l~~~~~~~k~~~~ 623 (631)
+....++..++.+.|+...|.. ++..+-+-+. ...++-...++++++...
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccc
Confidence 5678899999999999888888 8888887775 334444466666665543
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0014 Score=62.52 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=98.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
+.+.+.......+......-...|++.|++++|++...... ..+....+ +..+.+..+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~-----------------VqI~lk~~r~ 153 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALN-----------------VQILLKMHRF 153 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHH-----------------HHHHHHHHHH
Confidence 34444444334343444444456777777777777665421 11111111 2233444567
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~ 525 (631)
+-|.+.++.|.+- -+..|.+-|..+|.+ .+....|.-+|++|.++ ..|+..+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 7777777777764 245566666666543 34567777777777664 467777777777777778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSG-EAYKYLEEMLE 566 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-~A~~ll~~m~~ 566 (631)
+++...+... ++.+...+|.+-...|... --.+.+.+++.
T Consensus 230 L~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8777776444 4555555554444445443 33445555554
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.0019 Score=69.29 Aligned_cols=337 Identities=15% Similarity=0.162 Sum_probs=180.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.|..|....+|++++.+-+ ..|.|.-+ .-.+.++++...|+-++|-++- .. +-.+ -..|..|.+.|.
T Consensus 563 aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~ 630 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCC
Confidence 4445555555565555432 23443222 3445566666667666665431 11 1111 235677888888
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
+..|.+....-. .+..|..+...+..++.+..-+++|-++|+++.+ +.-.+.+|-+..-+.+|+++-+-.
T Consensus 631 p~~a~~~a~n~~-~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 631 PAKAARAALNDE-ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred chHHHHhhcCHH-HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh
Confidence 877765443211 1223555566666666666666777777766653 222333333333344444433221
Q ss_pred HH---------cCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 410 KA---------KGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 410 ~~---------~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
-- -|.. --...+...|+.|...+ ..-..|.+....+.|.+|+.+++.+.+... -..-|..+...|+
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~--~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhya 776 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYA 776 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhc
Confidence 00 0000 00111122222222211 111234556667889999999998887633 3345777888899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 559 (631)
..|+++.|.++|.+. ..++-.|.+|.+.|+|+.|.++-.+.. |.......|-+-..-+-++|++.+|.+
T Consensus 777 n~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred cchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 999999999988653 235667888999999999888876654 333345555555555556666666655
Q ss_pred HHHH---------HH-HCCC-----------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-chHHHHH---
Q 036072 560 YLEE---------ML-EKGM-----------KAP--VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF-EVSNVLA--- 612 (631)
Q Consensus 560 ll~~---------m~-~~g~-----------~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~l~--- 612 (631)
++-. |- +.|. .|+ ..|...+..-|...|+...|++-|-+. |.+ ..-|++.
T Consensus 846 lyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea---~d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA---GDFKAAVNMYKASE 922 (1636)
T ss_pred eeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh---hhHHHHHHHhhhhh
Confidence 4321 11 1111 122 224456666777778877777665433 222 2334442
Q ss_pred HHHHhhhhhhhccCc
Q 036072 613 RWAETTKNRVYRKDR 627 (631)
Q Consensus 613 ~~~~~~k~~~~~~~~ 627 (631)
-|.+.+.....+..+
T Consensus 923 lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGA 937 (1636)
T ss_pred hHHHHHHHHhccccc
Confidence 577766665555444
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00017 Score=77.41 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=96.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+...+...|-...|..+|+++ ..|..+|.+|+..|+..+|..+..+..+ -+||...|..+.+......-+
T Consensus 404 laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 344444555555555555432 2355555555555555555555544444 244444444444443333334
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
++|.++.+..... +-..+.....+.++++++.+.|+.-.+... ....+|-.+-.+..
T Consensus 474 EkawElsn~~sar----------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 474 EKAWELSNYISAR----------------------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAAL 530 (777)
T ss_pred HHHHHHhhhhhHH----------------------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHH
Confidence 4444444433211 000011111223455555555554333211 12334444444444
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
+.++++.|.+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+.+. -+-..|...+-...+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHH
Confidence 555555555555554442 22 234455555555555555555555555555432 23444444444455555555555
Q ss_pred HHHHHHH
Q 036072 559 KYLEEML 565 (631)
Q Consensus 559 ~ll~~m~ 565 (631)
+.+.++.
T Consensus 608 ~A~~rll 614 (777)
T KOG1128|consen 608 KAYHRLL 614 (777)
T ss_pred HHHHHHH
Confidence 5555554
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00029 Score=79.00 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=130.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
.+..++..+-.|..+..+.|.+++|..+++...+..+-+...+..+...+.+.+++++|+..++...... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456789999999999999999999999999999988888999999999999999999999999999986 556777788
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
+..++.+.|++++|..+|+++....+.+..++..+...+-+.|+.++|...|+...+. ..+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8889999999999999999998765666889999999999999999999999999875 234445555444
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.00015 Score=68.67 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=80.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHcCCC--hHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKL--PKEAQ 334 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~-~~~~g~--~~~A~ 334 (631)
.++.+++...++...+.++.+.+.|..+...|...|++++|...|+...+.. +.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4555666666666666666677777777777777777777777777777665 4456666666654 345555 46777
Q ss_pred HHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 335 ~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+++++..+..+.+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777776665666667777777777777777777777777664
No 118
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.004 Score=67.77 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=141.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-C--------CCHHHHHHHHHHHHHccCHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-L--------LSMETFKIAMNAFAAAKERK 296 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g-~--------~~~~~~~~li~~~~~~g~~~ 296 (631)
+.|.+-...+. +..+|..|.+.+.+.++++-|.-.+..|.... . .+.++=..+.......|..+
T Consensus 745 D~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlE 817 (1416)
T KOG3617|consen 745 DAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLE 817 (1416)
T ss_pred HHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHH
Confidence 34665555553 36899999999999999999888888876432 1 11133333444456789999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+|+.+|...++. ..|=+.|-..|.+++|.++-+.-. ++. -..||......+-..++.+.|++.|++...
T Consensus 818 eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-RiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 818 EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RIH-LRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-cee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 999999998874 334456777899999998865432 211 134666677777777888888887765321
Q ss_pred ----------cC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHH
Q 036072 377 ----------KG---------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437 (631)
Q Consensus 377 ----------~g---------~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 437 (631)
.. -..|...|...-..+-..|+.+.|+.+|...++ |-
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------------------~f 942 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------------------YF 942 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------------------------hh
Confidence 10 112344455555555566777777777766543 34
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
++++..|-.|+.++|-.+-++-. |....-.|.+.|-..|++.+|...|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45555666677777766655421 33444456666667777777776665543
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00091 Score=63.78 Aligned_cols=128 Identities=14% Similarity=0.069 Sum_probs=69.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 283 ~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
..+-..+...|+-+....+........ .-+....+.++....+.|++..|...|.+....-++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334444444555555544444433221 3344444455566666666666666666666555566666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
++++|..-|.+..+.- .-+...+|.|.-.+.-.|+.+.|..++......
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6666666666655541 113344555555555566666666666555544
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0016 Score=73.91 Aligned_cols=238 Identities=12% Similarity=0.106 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+...++...+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhhh
Confidence 34566667777777777777777766555542 22222222222244444444433332 22222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 437 (631)
.....++.-+..+...|.+.+ -+..++-.+..+|-+.|+.++|..+++++.+.. |+ ++.+.|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~--------------n~~aLN 154 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD--------------NPEIVK 154 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc--------------cHHHHH
Confidence 223333333333333333321 123355666667777777777777777776643 33 445555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
.+.-.|... ++++|..++.+.... +...+++..+.++|.++.... .-+...+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f----------- 206 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFF----------- 206 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHH-----------
Confidence 566666666 677776666655443 455566677777777776642 1122222
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 518 NYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 584 (631)
.++.+.+... |..--..++-.+...|-..++++++..+++.+++.. +-|.....-++.+|.
T Consensus 207 -----~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 207 -----LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred -----HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2222222221 222234556666777888899999999999999875 335556666777765
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.04 E-value=0.0016 Score=69.68 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=121.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHH
Q 036072 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~ 434 (631)
|.+....+.|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|.+.-
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~------------------------ 792 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD------------------------ 792 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc------------------------
Confidence 4555667788888888888887632 23346677788888999999998886541
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.++-.|.+|.+.|+|++|.++-.+. .|.......|-+-..-+-+.|++.+|.++|-.+- .|+ ..|.+|-
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmyd 861 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYD 861 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHH
Confidence 2344578888899999998886654 3444455666666666778888888887775442 344 2456677
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
+.|..+..+++.++-.-. .-..|...+..-|...|+.++|..-|-+.- .|.+-++.|-..+.|++|-+
T Consensus 862 k~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 862 KHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred hhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHH
Confidence 777777777666543221 122344455555666666666665543322 23444445555555554444
Q ss_pred H
Q 036072 595 L 595 (631)
Q Consensus 595 l 595 (631)
+
T Consensus 930 i 930 (1636)
T KOG3616|consen 930 I 930 (1636)
T ss_pred H
Confidence 3
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.03 E-value=0.0011 Score=62.87 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY-FQTGN--YEMGR 523 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~-~~~g~--~~~A~ 523 (631)
++.+++...++...+... .|...|..+...|...|++++|...|++..+.. .-+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 455566666655555432 366677777777777777777777777777653 23556666666653 45555 47777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
+++++..+.+.. +...+..+...+.+.|++++|...|+++.+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777776544 56666777777777777777777777777653
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.011 Score=61.77 Aligned_cols=339 Identities=15% Similarity=0.054 Sum_probs=217.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcCCChH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG-VDTINCLLENLGRSKLPK 331 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~-~~~~~~Ll~~~~~~g~~~ 331 (631)
.+.+..|+++.|+.+|.+.....+.+...|+.=..+|+..|++++|++=-..-++. .|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999999888887778999999999999999998877666665 454 456888888888889999
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH--HHHcCCCCC--------HHHHHHHHHHHHHc-----
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE--MIDKGFKPD--------VVAHNIMLEGLLKI----- 396 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~--m~~~g~~p~--------~~ty~~li~~~~~~----- 396 (631)
+|..-|.+-.+..+.|...++-+..++.- +. .+.+.|.. |.. ++.-+ ..+|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~-~~~~~~~~p~~~~-~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLE--DY-AADQLFTKPYFHE-KLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhH--HH-HhhhhccCcHHHH-HhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999877777788888888888711 11 11111110 000 11111 22344444443321
Q ss_pred --CCHHHHHHHHHHHHHc--------CC-------CCc---------HHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHH
Q 036072 397 --GKRSDAIKLFEVMKAK--------GP-------SPN---------VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450 (631)
Q Consensus 397 --g~~~~A~~ll~~m~~~--------g~-------~p~---------~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~ 450 (631)
...+...+....+... |. .|. ..-...-.. .+....-.-.+.++..+..+++
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~--~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR--VKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH--HHHhhhHHHHHHHHHHHhhhHH
Confidence 1111111111111110 00 010 000000000 0002233455667777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHcCCHHHHH
Q 036072 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY-------NMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 451 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~Li~~~~~~g~~~~A~ 523 (631)
.|.+-+....+.. -+..-++....+|...|.+.++........+.|.. ...-| ..+..+|.+.++++.|+
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 8888888877754 35555666777899999888888877777766532 12222 33444677778899999
Q ss_pred HHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 524 KVWDEMIRRGCCPDDNSY-------------------------TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~-------------------------~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 578 (631)
..|.+.......|+..+= ..=...+.+.|++.+|++.|.+++... +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 999887765444433211 111345667899999999999999986 667888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 579 FAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 579 li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
-.-+|.+.|.+..|+.-.+...+..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999988776665543
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0063 Score=58.22 Aligned_cols=252 Identities=14% Similarity=0.102 Sum_probs=152.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH-
Q 036072 254 ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE- 332 (631)
Q Consensus 254 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~- 332 (631)
-+--.|.+..++..-+...... .+.+.-..+-++|...|.+.....- ++... .+....+..+......-+..+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 3344566666665544443322 3344455566777777776544322 22222 2222222222222222222222
Q ss_pred HHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 333 A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..++.+.+... ...+......-...|+..+++++|++...... +......=+..+.+..+++-|.+.++.|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23334444332 22333334444677899999999999987722 233344445567788899999999999987
Q ss_pred cCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 036072 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491 (631)
Q Consensus 412 ~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 491 (631)
- -+..|.+.|- +++|......+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++
T Consensus 166 i---ded~tLtQLA-----------~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 166 I---DEDATLTQLA-----------QAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred c---chHHHHHHHH-----------HHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 4 2344444332 23344445566799999999999876 6789999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 036072 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNY-EMGRKVWDEMIRR 532 (631)
Q Consensus 492 ~~m~~~g~~p~~~t~~~Li~~~~~~g~~-~~A~~~~~~m~~~ 532 (631)
++......+ +..+...+|-+-...|.- +-..+.+..+...
T Consensus 231 ~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 231 EEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999987533 456665555555555554 4445666666654
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.0023 Score=66.16 Aligned_cols=141 Identities=16% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHH
Q 036072 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435 (631)
Q Consensus 356 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 435 (631)
..+...|++++|+..++.+... .+-|..-+......+.+.++.++|.+.++.+... .|+. ...
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~--------------~~l 376 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNS--------------PLL 376 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCc--------------cHH
Confidence 3444667777777777776664 2223444445556777777777777777777663 4442 122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
+-.+..+|.+.|++.+|..+++..... .+-|...|..|.++|...|+..++..-..++ |..
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~ 437 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YAL 437 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHh
Confidence 334556677777777777777776654 3346777777777777777777776665554 234
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 516 TGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~ 532 (631)
.|++++|...+....+.
T Consensus 438 ~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 56677777766666553
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.94 E-value=0.00096 Score=59.74 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.... +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445666677788888888887777654 346677777777777788888888888877765432 66777777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 036072 551 QDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~ 567 (631)
.|+.++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 78888888888777765
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00033 Score=61.85 Aligned_cols=95 Identities=12% Similarity=-0.019 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
....+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|..+++...+..+.+...+..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33344444444444444444444444432 23344444444444444444444444444433333344444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMID 376 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~ 376 (631)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555554444444
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.93 E-value=0.00043 Score=61.99 Aligned_cols=106 Identities=8% Similarity=-0.074 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
+......+...|++++|...|+......+.+..++..+..++...|++++|+..|+...+.. +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33455666777788888888888777777777777777777777788888887777777764 55667777777777777
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVL 354 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~L 354 (631)
|+.++|...|+...+..+.+...|...
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 777777777777665544444444333
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=0.017 Score=64.59 Aligned_cols=130 Identities=13% Similarity=-0.018 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
...+....+.|++..+++.|..+.-...+.... -...|....-.|...++...|+.-|+...+.. +-|...|..+..
T Consensus 526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGe 604 (1238)
T KOG1127|consen 526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGE 604 (1238)
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHH
Confidence 445666666666666666666663333222221 11223334445555666666666666666554 456666777777
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
+|...|.+..|.++|.+...-.+.+...-.-....-+..|.+.+|+..+....
T Consensus 605 AY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777777766654322222222222334455667777776666554
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.88 E-value=0.0018 Score=72.69 Aligned_cols=154 Identities=8% Similarity=0.013 Sum_probs=128.3
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChh
Q 036072 270 EMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349 (631)
Q Consensus 270 ~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~ 349 (631)
......+.+.+++-.|.......|..++|+.+++...+.. +-+......+...+.+.+.+++|...+++.....+.+..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 3334444568899999999999999999999999999974 445666777889999999999999999999988788889
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
..+.+..++.+.|++++|..+|+++...+ .-+..++..+-..+.+.|+.++|...|+...+. ..+...-|+..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 230 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH
Confidence 99999999999999999999999999842 234788889999999999999999999998765 3344455555443
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00041 Score=72.18 Aligned_cols=125 Identities=16% Similarity=0.221 Sum_probs=103.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
...+|+..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456777778899999999999999874 44 44457788888889999999999998753 446777788888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
+.++++.|.++.+++.+.... +..+|..|..+|...|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999986322 56799999999999999999999988764
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=3.1e-05 Score=50.38 Aligned_cols=33 Identities=36% Similarity=0.831 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 382 (631)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.81 E-value=0.065 Score=56.31 Aligned_cols=389 Identities=12% Similarity=0.128 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHhhccCc-hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHH
Q 036072 208 NLSHNLVVDVLERFRHAR-RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286 (631)
Q Consensus 208 ~~~~~~~~~vl~~~~~~~-~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 286 (631)
+.+-+....+++.....+ +.+..+++.+.... .-+...|..-|+.-.+.++++..+.+|.+.... +.+.+.|..-|
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHH
Confidence 344455556666654433 34667777665433 334678889999999999999999999988754 34566666666
Q ss_pred HHHHHc-cC----HHHHHHHHHHHHh-CCCCc-CHHHHHHHHHHH---------HcCCChHHHHHHHHHHhcccCC----
Q 036072 287 NAFAAA-KE----RKKAVAIFELMNK-YKFKA-GVDTINCLLENL---------GRSKLPKEAQLLFDKLKHRFTP---- 346 (631)
Q Consensus 287 ~~~~~~-g~----~~~A~~v~~~m~~-~g~~~-~~~~~~~Ll~~~---------~~~g~~~~A~~l~~~m~~~~~p---- 346 (631)
..-.+. ++ .+...+.|+.... .|+.+ +...|+..+..+ ....+++...+++.++...---
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 555443 22 2334455555443 34333 223344444332 2223445555566655321000
Q ss_pred ---ChhhHHHHHHH-------HHhcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHHcC--
Q 036072 347 ---NLTTYTVLLGG-------WCRVKNLMEAGRVWNEMID--KGFKPDVVA---------------HNIMLEGLLKIG-- 397 (631)
Q Consensus 347 ---~~~~y~~Li~~-------~~~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------y~~li~~~~~~g-- 397 (631)
|-..|..=|.. --+...+..|.++++++.. +|+..+..+ |-.+|.-=..++
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 11111111111 1122355666666666653 233221111 222222111100
Q ss_pred -----------------------C----HHHHHHHHHHH----HHcCCCCcH--------HHHHHHHHHHhhcCHHHHHH
Q 036072 398 -----------------------K----RSDAIKLFEVM----KAKGPSPNV--------RSYTIMIWKFCKQNAAVYTC 438 (631)
Q Consensus 398 -----------------------~----~~~A~~ll~~m----~~~g~~p~~--------~~~~~li~~~~~~~~~~~~~ 438 (631)
- +-++...+.+. .+.|-.|+. .+|...|.+..+.+...|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111111111 011222221 12233333333333334444
Q ss_pred HHHHHhcc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 036072 439 LITGFGNR---RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMIMKSYF 514 (631)
Q Consensus 439 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Li~~~~ 514 (631)
+...--.. ...+.....++++...-..--..+|..+|+...+..-+..|..+|.+..+.+..+ .+..++++|.-||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 33321111 1355566666666554222233468888888888999999999999999988777 7888889988777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP--VLDYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A 592 (631)
.++.+-|.++|+-=.++ ..-+..--...+.-+...++-..|..+|++.+..++.++ ..+|..++.-=+.-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46778899999976654 122444456677888888999999999999998876665 45799999999999999999
Q ss_pred HHHHHHHHh
Q 036072 593 DELAQKMRF 601 (631)
Q Consensus 593 ~~l~~~m~~ 601 (631)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 999888754
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.81 E-value=0.0064 Score=63.02 Aligned_cols=239 Identities=13% Similarity=0.032 Sum_probs=137.5
Q ss_pred HHHHhhccCchhHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHH
Q 036072 216 DVLERFRHARRPAFRFFCWAGD--KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFA 290 (631)
Q Consensus 216 ~vl~~~~~~~~~A~~~f~~~~~--~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~ 290 (631)
..|.+-+.+++--.+||+.+.. ..+-.|.... ++.=.-..+..++....+.|...+. ++...+...+.+..
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 3344456666667788888763 2232222221 1111112344455555555554433 34445555555444
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
....-..+-.++.+..+. .-..--|..- -.+...|..+.|+..++.+....+.|+..+......+.+.++.++|.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 286 EALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred ccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 433333333333322221 1112223333 3344677888888888887777777777777778888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 371 WNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 371 ~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
++.+... .|+ ....-.+..+|.+.|+..+|+.+++...... |+ ++..|..|..+|...|+.
T Consensus 363 ~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~--------------dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 363 LKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PE--------------DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CC--------------CchHHHHHHHHHHHhCch
Confidence 8888775 454 4455566677888888888888887776652 32 455566666677777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
.++..-..++.. ..|++++|...+....+.
T Consensus 425 ~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence 666666555432 346666666666665553
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00054 Score=71.30 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.-..+++.+...++++.|..+|+++.+.. +++...+++.+...++..+|++++++..+.. +.+...+....+.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 34445555556677777777777777665 2344456666666677777777777766543 4455555556666667
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
.++.+.|..+.+++.+-.+.+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777666555555677777777777777777776666654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.014 Score=55.54 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHhC---C-CCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH
Q 036072 294 ERKKAVAIFELMNKY---K-FKAGVD-TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 294 ~~~~A~~v~~~m~~~---g-~~~~~~-~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
+.++.++++..++.. | ..++.. .|..++-+....|..+.|..+++.+..+++.+..+-..-...+--.|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 345555555555432 2 334433 34445556667777888888888877776444444333333344567777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC
Q 036072 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448 (631)
Q Consensus 369 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~ 448 (631)
++|+.+.+.. +.|.++|--=+...-..|+.-+|++-+.+..+. +.. |...|.-+...|...|+
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~---------------D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMN---------------DQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcC---------------cHHHHHHHHHHHHhHhH
Confidence 7777777654 335555554444444555555666555555442 111 44455555555555566
Q ss_pred HHHHHHHHHHHHH
Q 036072 449 MDIVYDLLKEMEE 461 (631)
Q Consensus 449 ~~~A~~l~~~m~~ 461 (631)
+++|.-.++++.-
T Consensus 170 f~kA~fClEE~ll 182 (289)
T KOG3060|consen 170 FEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00039 Score=72.65 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540 (631)
Q Consensus 463 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (631)
+.+.+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..+++..+++.=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445566666666666666666666666666543 2222233445667777777777777776666666677777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 586 (631)
+|.||+.+.+.|++..|.++..+|+.++...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777766666665555555655555555444
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=5.1e-05 Score=49.29 Aligned_cols=33 Identities=39% Similarity=0.695 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=4.7e-05 Score=49.26 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036072 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381 (631)
Q Consensus 349 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 381 (631)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.0013 Score=57.98 Aligned_cols=116 Identities=18% Similarity=0.068 Sum_probs=93.4
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 301 v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
.++...+.. +.+......+...+...|++++|...|+.+....+.+...|..+...+.+.|++++|..+++...+.+ +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 344444443 23445666778888999999999999999887767788999999999999999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 420 (631)
.+...+..+...+...|++++|...|+...+. .|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 46777888888999999999999999998875 454443
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.15 Score=56.83 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=127.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSIL--GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~--~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
.|++-...+.++.+- ..|..+++++ .|.|..++|..+++.....+..|..|...+-.+|...++.++|..+|+.
T Consensus 27 kal~~~~kllkk~Pn----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 27 KALAKLGKLLKKHPN----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 366666655555432 3344444443 4566777777777766665555666777777777777777777777777
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384 (631)
Q Consensus 305 m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 384 (631)
..+. .|+......+..+|++.+++.+-.++--+|-+.++.+...+=++++.+.+... .|+..
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~----------------~~~~~ 164 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF----------------SENEL 164 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc----------------CCccc
Confidence 7665 35566666666677776666655554444444444445544444444332211 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH-HHHHHcC
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL-KEMEERG 463 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g 463 (631)
.. .+. ..-|.+.++.+.+.+-.-. +-. -.-.-...+-..|++++|.+++ ....+.-
T Consensus 165 ~~-~i~--------l~LA~~m~~~~l~~~gk~~--s~a------------E~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 165 LD-PIL--------LALAEKMVQKLLEKKGKIE--SEA------------EIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred cc-chh--------HHHHHHHHHHHhccCCccc--hHH------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 11 111 1224445555544430101 000 0001122344567899999988 4455554
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 464 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
...+...-+.-+..+...+++.+..++-.++...|
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44555666677788888899999999988888875
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.61 E-value=0.00011 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 571 (631)
+|+.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0026 Score=57.00 Aligned_cols=124 Identities=14% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT---IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD--NSYTVLI 545 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li 545 (631)
|..++..+ ..++...+...++.+.+.. ..+ ....-.+...+...|++++|...|+.+......++. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444 3666666766677766642 112 222333446666777777777777777765422221 2333455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
..+...|++++|+..++...... .....+.....++.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66667777777777775533322 2334556677777777777777777664
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.0018 Score=67.81 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 387 (631)
+.+...+..+++.+....+.+.+..++-..+.. ...-..|..++|+.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555555555431 11222334466666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
.||+.+.+.|++..|.++..+|...+...+..|+...+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 666666666666666666666555544444444444333
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0053 Score=54.99 Aligned_cols=126 Identities=13% Similarity=-0.024 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCH--HHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM---ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV--DTINCL 320 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~--~~~~~L 320 (631)
..|..++..+. .++...+...++.+...+.-+. ...-.+...+...|++++|...|+........++. .....|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34555555553 6666666666777766655432 23333445666667777777777766665422211 122334
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
...+...|++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55566666666666666553321 12333445555666666666666666554
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0013 Score=54.42 Aligned_cols=77 Identities=19% Similarity=0.416 Sum_probs=49.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKM--------PDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~--------~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
.|..+...+++.....+|..++..|+ .|+..+|+.++.+.++..- .-+.+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 7777777777777655432 23455566666666666666666666
Q ss_pred HHHHHH
Q 036072 510 MKSYFQ 515 (631)
Q Consensus 510 i~~~~~ 515 (631)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0016 Score=65.45 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD---VVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~ 404 (631)
++.+.|.++|+...+.++.+...|...++.+.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344555555544444444444555555555555555555555554433 1111 1245555555555555555555
Q ss_pred HHHHHHH
Q 036072 405 LFEVMKA 411 (631)
Q Consensus 405 ll~~m~~ 411 (631)
+.+.+.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0033 Score=63.17 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA-AKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~-~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
.+|..+|+..-+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|.++|+...+. +..+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 5799999999999999999999999997766677788777666444 57777799999999986 467888899999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNL---TTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~---~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+.|+.+.|..+|+.....+.++. ..|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987755444 58999999999999999999999999885
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00019 Score=45.20 Aligned_cols=29 Identities=38% Similarity=0.825 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 378 (631)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.003 Score=50.54 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
...+...|++++|+..++...+.. +.+...+..+...+...+++++|.+.|+......+.+..++..+...+...|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444444332 1222334444444444444555555444443333333344444555555555555
Q ss_pred HHHHHHHHHH
Q 036072 366 EAGRVWNEMI 375 (631)
Q Consensus 366 ~A~~l~~~m~ 375 (631)
+|...+....
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.06 Score=54.80 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
+.+.-|.-+...|+...|.++-.+. + .|+...|-..+.+|+..++|++-.++... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 4555566677788888888776554 2 57888899999999999999987776432 1 25678999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+.|+..+|..++.++ .+..-+..|.++|++.+|.+..-+.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999888772 22456777888888888877765544
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0025 Score=52.82 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=21.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Li~~~~~ 515 (631)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3344444555555555555555555 5555555555555443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.37 E-value=0.0051 Score=52.53 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHH
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAGVDTINCLLEN 323 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~~~~~~~Ll~~ 323 (631)
-.....+.+.|++++|...|+.+....+. ....+..+..++...|+++.|.+.|+.+..... ......+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555555443321 123334444444444444445444444443210 0112233333444
Q ss_pred HHcCCChHHHHHHHHHHhcc
Q 036072 324 LGRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~ 343 (631)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444444444444444433
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.35 E-value=0.0002 Score=45.09 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0033 Score=50.31 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+...+...|++++|..+++...+..+.+...+..+...+...+++++|.+.|+...... ..+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 34444445555555555555443333333444445555555555555555555544432 11223444444555555555
Q ss_pred HHHHHHHHHHH
Q 036072 400 SDAIKLFEVMK 410 (631)
Q Consensus 400 ~~A~~ll~~m~ 410 (631)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.043 Score=55.27 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=62.9
Q ss_pred HHHhc-CChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHH
Q 036072 477 LMKIQ-KMPDEAVRIYKEMVR----SGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-----PDDN-SYTV 543 (631)
Q Consensus 477 ~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ 543 (631)
.|... |++++|++.|++..+ .+ .+. ..++..+...+.+.|++++|.++|+++...-.. .+.. .|-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 667777777766553 12 111 234556667777788888888888877654221 1221 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEK--GMKAP--VLDYNKFAADLSRA--GRSYVLDELAQKMR 600 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~--g~~p~--~~~~~~li~~~~~~--g~~~~A~~l~~~m~ 600 (631)
.+-++...|+...|.+.+++.... ++..+ ......|+.++-.. ..++.+..-++.+.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233455567888888888877654 33333 22344555555432 22444444444443
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.084 Score=50.38 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=129.0
Q ss_pred CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 241 FAHNSR-TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 241 ~~p~~~-~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
..++.. .|..++=+....|+.+.|...++.+..+-+-+..+-..-...+-..|.+++|+++++.+++.. +.|..++-.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 445544 466666777788999999999999988765555555444555667899999999999999886 666777766
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH---
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA-HNIMLEGLLK--- 395 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~li~~~~~--- 395 (631)
=+-..-..|..-+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-. .|.... +..+...+.-
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhh
Confidence 5656666788889999999998889999999999999999999999999999999874 454433 3344444333
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 396 IGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 396 ~g~~~~A~~ll~~m~~~ 412 (631)
..+...|.++|....+.
T Consensus 204 ~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 204 AENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33567788888888764
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.14 Score=50.09 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTY---TVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y---~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+...|++++|.+.|+.+....+-+.... -.+..++.+.+++++|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455666666666666655443333332 33445556666666666666666654
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.29 E-value=0.24 Score=55.84 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m 340 (631)
...|...|-+.....+.-...|..|...|+...+...|.+.|+...+.. ..+......+.+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 3334444433333333333478888888888888888888888888765 556777888888999999999998884443
Q ss_pred hcccCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 341 KHRFTPNLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 341 ~~~~~p~~~~--y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
.+..+.-... |--..-.|.+.++..+|..-|+...... +.|...|..+..+|.+.|++..|+++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3322212222 2334445667788888888888777653 23677888999999999999999999987765
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0051 Score=57.37 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 483 (631)
+-+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 556788888888888888888888888888855543
No 161
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.24 E-value=0.26 Score=49.03 Aligned_cols=206 Identities=11% Similarity=0.044 Sum_probs=128.4
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+..+.-.|+...|+.....+.+-.+-|...|..-..+|...|+...|+.=++...+..- -+..++--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHH
Confidence 33444566777777777777666666666777777777777777777665555444321 23444445555666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHH
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN---ALIKL 477 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~li~~ 477 (631)
.++...++-.+ +.||....-.....+-+.. ... .-+......++|.++++-.+...+.......+.|+ .+-.+
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~-K~l-es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVV-KSL-ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHH-HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 77766666655 3454332211111111100 000 00223345577888888887777664443344444 44556
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g 533 (631)
+...+++.+|++...+..+. .|+ +.++.-=..+|.-..+++.|+.-|+...+.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 67788999999999998875 454 8888888899999999999999999998764
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.13 E-value=0.013 Score=49.98 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK--PDVVAHNIMLE 391 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~ty~~li~ 391 (631)
+..+...+.+.|++++|...|+.+....+.+ ...+..+...+.+.|++++|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444455555566666666665554432221 234455566666666666666666666543111 11334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 036072 392 GLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 392 ~~~~~g~~~~A~~ll~~m~~~ 412 (631)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 163
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.10 E-value=0.45 Score=49.15 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS-YTVLI 545 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li 545 (631)
...|...|.+..+..-++.|..+|-++.+.+ +.+++..++++|..++ .|+...|..+|+--..+ .||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567888888888889999999999999988 6788889999998776 56778889999865554 234443 35567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAP--VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.-+..-++-+.|..+|+..+.+ +..+ ..+|..+|..-..-|+...|..+-++|.+.-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 7778889999999999966554 2222 4479999999999999999988888887644
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0075 Score=56.29 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQ-----KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT----------------GNYEMGRKV 525 (631)
Q Consensus 467 ~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~----------------g~~~~A~~~ 525 (631)
+..+|..++..|.+. |.++-....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 555666666655433 45555556666666666666666666666654321 123456677
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+++|...|+-||..++..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777655443
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.97 E-value=0.0016 Score=52.28 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFK-PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555555443211 1222333344455555555555555544 111110 122222334444445555555544
Q ss_pred HH
Q 036072 561 LE 562 (631)
Q Consensus 561 l~ 562 (631)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.96 E-value=0.0019 Score=51.75 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666654321 1333344456666666666666666655 21111 112233344566666666666666
Q ss_pred HHHH
Q 036072 595 LAQK 598 (631)
Q Consensus 595 l~~~ 598 (631)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.94 E-value=0.054 Score=50.01 Aligned_cols=83 Identities=7% Similarity=-0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG--VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+..+...+...|++++|...|+...+....+. ...+..+...+.+.|++++|...+++..+..+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555555555666666666665554321111 244555555666666666666666665544333445555555555
Q ss_pred HhcCC
Q 036072 359 CRVKN 363 (631)
Q Consensus 359 ~~~g~ 363 (631)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 55554
No 168
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.84 Score=49.62 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=121.2
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 036072 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423 (631)
Q Consensus 344 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 423 (631)
++.+....-.+..++...|.-++|.+.|-+... | ...+..|...+++.+|.++-+... .|.+.+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tl-- 912 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTL-- 912 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHH--
Confidence 444666777788888888888888877654332 1 235667788888888888766542 2333332
Q ss_pred HHHHHhhc---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 424 MIWKFCKQ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 424 li~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
|.-+... +..+. --|..+.+.|++-+|-+++.+|.+. +.++-..--..++.++. ..+..++.+-.+....
T Consensus 913 -iak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~ 989 (1189)
T KOG2041|consen 913 -IAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDK 989 (1189)
T ss_pred -HHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhh
Confidence 2111110 11111 1356677778888888888888643 44432222122222221 1222333333444444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHH-CCCCCCH
Q 036072 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL--IGGLISQDRSGEAYKYLEEMLE-KGMKAPV 573 (631)
Q Consensus 497 ~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--i~~~~~~g~~~~A~~ll~~m~~-~g~~p~~ 573 (631)
+|..-+... +...|-..++-++.+..-. -...|.-+ ..--...|.++.|++.--.+.+ ..+-|..
T Consensus 990 ~g~~~dat~-------lles~~l~~~~ri~~n~Wr-----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~ 1057 (1189)
T KOG2041|consen 990 HGFLEDATD-------LLESGLLAEQSRILENTWR-----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPA 1057 (1189)
T ss_pred cCcchhhhh-------hhhhhhhhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHH
Confidence 443322111 1222333333333332221 23344444 4444567888888876655554 2567888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 574 LDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..|+.+.-+-+....+.-.-+.|-+++.
T Consensus 1058 eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1058 EIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 8888887777776666655555555543
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.25 Score=48.41 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 543 VLIGGLISQDRSGEAYKYLEEMLEK--GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 543 ~li~~~~~~g~~~~A~~ll~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+..-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455678888888888888888875 333344556778888888999988888777664
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.89 E-value=0.7 Score=47.93 Aligned_cols=360 Identities=15% Similarity=0.092 Sum_probs=184.2
Q ss_pred hHHHHHHHhhcCCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHccCHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAH---N-SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN--AFAAAKERKKAVA 300 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p---~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~--~~~~~g~~~~A~~ 300 (631)
.|.++|..+.....-.| . ...-+.++++|.. ++.+.+...+.+..+...-+ .|-.+.. .+-+.+.+.+|++
T Consensus 24 esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 24 ESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhHHHHHH
Confidence 36666666543322222 1 2334566666654 34555555555555543322 2333332 2346677888888
Q ss_pred HHHHHHhC--CCCc------------CHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-----cCCChhhHHHHHHHHHhc
Q 036072 301 IFELMNKY--KFKA------------GVDTINCLLENLGRSKLPKEAQLLFDKLKHR-----FTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 301 v~~~m~~~--g~~~------------~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~p~~~~y~~Li~~~~~~ 361 (631)
.+...... +..+ |...=+..++.+...|.+.++..+++++.++ ..-+..+|+-++-.+.+.
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 77776654 2211 1112234566777888888888888887654 235777777776666543
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHc-CCHHH--------HHHHHHHH--------------------
Q 036072 362 KNLMEAGRVWNEMIDK---GFKPDVVAHNIMLEGLLKI-GKRSD--------AIKLFEVM-------------------- 409 (631)
Q Consensus 362 g~~~~A~~l~~~m~~~---g~~p~~~ty~~li~~~~~~-g~~~~--------A~~ll~~m-------------------- 409 (631)
.|-++++. .+-|| |.-+|-.|.+. ..++. +.+++..+
T Consensus 181 --------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 181 --------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred --------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 44444332 23333 33344444432 11111 12222211
Q ss_pred --HHcCCCCcHH-HHHHHHHHHh----------------------hcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 410 --KAKGPSPNVR-SYTIMIWKFC----------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 410 --~~~g~~p~~~-~~~~li~~~~----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
...-+.|+-. ....++..+. +.-..++..++....+.++...|...+.-+.--..
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 1112222211 1111111111 11334566667777777777777766665543211
Q ss_pred CC-------------------CHHHHHHH---HHH------------------------HHhcC-ChhHHHHHHHHHHHC
Q 036072 465 PP-------------------DGLTYNAL---IKL------------------------MKIQK-MPDEAVRIYKEMVRS 497 (631)
Q Consensus 465 ~p-------------------~~~t~~~l---i~~------------------------~~~~g-~~~~A~~l~~~m~~~ 497 (631)
.. |...|+.+ +.. +-+.| .-++|+++++.+.+-
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 00 11111100 000 11122 245666666666542
Q ss_pred CCCCCHHHHHH----HHHHHHH---cCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 036072 498 GFKPTIHTYNM----IMKSYFQ---TGNYEMGRKVWDEMIRRGCCPDD----NSYTVLIGG--LISQDRSGEAYKYLEEM 564 (631)
Q Consensus 498 g~~p~~~t~~~----Li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~--~~~~g~~~~A~~ll~~m 564 (631)
. .-|...-|. +=.+|.. ...+..-.++-+-+.+.|+.|-. ..-|.|.+| +..+|++.++.-+-..+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 112222222 2223332 12334444444445556776543 334444443 44689999988776666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 565 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+ +.|++.+|..+..++....++++|..++.+++...
T Consensus 489 ~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~ 525 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE 525 (549)
T ss_pred HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence 55 68999999999999999999999999999998633
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.022 Score=59.31 Aligned_cols=86 Identities=8% Similarity=-0.100 Sum_probs=40.8
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
...|++++|++.|+.+++.. +-+...|..+..+|...|++++|...++.+....+.+...|..+..+|...|++++|..
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444444444444444433 23344444444444445555555555544444333344445555555555555555555
Q ss_pred HHHHHHH
Q 036072 370 VWNEMID 376 (631)
Q Consensus 370 l~~~m~~ 376 (631)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555544
No 172
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=1 Score=49.63 Aligned_cols=375 Identities=15% Similarity=0.146 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCCCHHHHHHH-----HHhhcc--CchhHHHHHHHhhcCCCCCCCHHH
Q 036072 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDV-----LERFRH--ARRPAFRFFCWAGDKPGFAHNSRT 247 (631)
Q Consensus 175 ~~~~~~l~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~v-----l~~~~~--~~~~A~~~f~~~~~~~g~~p~~~~ 247 (631)
..++.+..++|+.+.-+-.+ .....|+++|.+.|..+ +.++-. ....|.++-.|+....+.- ..+
T Consensus 402 ~~~~d~~~~v~~~lrVln~~------r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~--~~V 473 (829)
T KOG2280|consen 402 TPNPDEYMRVCRELRVLNAL------RDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG--DRV 473 (829)
T ss_pred cCChHHHHHHHHHHHHHhhh------cccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc--cHH
Confidence 36677777888776543221 12456888887776543 333322 2234777777774333211 455
Q ss_pred HHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC----cCHHHHHHH
Q 036072 248 YNSMMSILGRARQ---FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK----AGVDTINCL 320 (631)
Q Consensus 248 y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~----~~~~~~~~L 320 (631)
|.....-+.+..+ -+.+..+-+++... ..+.-.|..+.+.....|+.+.|..+++.=...+-. .+..-+...
T Consensus 474 l~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~A 552 (829)
T KOG2280|consen 474 LLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLA 552 (829)
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHH
Confidence 6666666665532 22233333333332 233345667777777778888887776543322210 011112223
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+.-+.+.|+.+....++-.+.... +...|...+ .+.-.|..+|.+..+..-+ . .+-+.| ..++-.
T Consensus 553 L~kaies~d~~Li~~Vllhlk~~~--~~s~l~~~l------~~~p~a~~lY~~~~r~~~~---~---~l~d~y-~q~dn~ 617 (829)
T KOG2280|consen 553 LKKAIESGDTDLIIQVLLHLKNKL--NRSSLFMTL------RNQPLALSLYRQFMRHQDR---A---TLYDFY-NQDDNH 617 (829)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHH--HHHHHHHHH------HhchhhhHHHHHHHHhhch---h---hhhhhh-hcccch
Confidence 333444455554444444443220 111111111 2233444444444432100 0 111111 122222
Q ss_pred HHHHHHH--HH----HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 036072 401 DAIKLFE--VM----KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNA 473 (631)
Q Consensus 401 ~A~~ll~--~m----~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ 473 (631)
.+..-|. .. ...|..|+..+.. ..+.+....++. ..+ .++..+-+.+.+.+..+ |......+.+-
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk~~a---~~~a~sk~~s~e--~ka---~ed~~kLl~lQ~~Le~q~~~~f~dlSl~d 689 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALKTAA---NAFAKSKEKSFE--AKA---LEDQMKLLKLQRTLEDQFGGSFVDLSLHD 689 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHHHHH---HHHhhhhhhhhH--HHH---HHHHHHHHHHHHHHHHHhccccccCcHHH
Confidence 2222111 00 0112233322211 111111000000 000 01222333344444332 33334445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
-+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..++|++-+++-+.+. .+.-|.-++.+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 6666778899999988877654 5788888888999999999998777665543 35667888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 554 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+||.+++.+.-.. .-.+.+|.+.|++.+|.++.-+-+
T Consensus 760 ~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHhc
Confidence 99999998764321 156788899999988888775544
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.87 E-value=0.027 Score=58.65 Aligned_cols=100 Identities=9% Similarity=-0.131 Sum_probs=84.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
...+...|+++.|+.+|++..+..+-+...|..+..+|...|++++|+..++.+++.. +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4456678999999999999999888888899999999999999999999999999875 557788888899999999999
Q ss_pred HHHHHHHHHhcccCCChhhHH
Q 036072 332 EAQLLFDKLKHRFTPNLTTYT 352 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~ 352 (631)
+|...|+...+..+.+.....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999998765444444433
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.84 E-value=0.051 Score=50.16 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455566667777888888888877765433222 3466667777777788888888777777642 223555566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+|...|+...+..-++.... .+++|.+++++....+ |+ .|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 66666665444433322211 1456677777766542 22 24455555544443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.83 E-value=0.036 Score=55.83 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHh----CCCCcC--
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEK----GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNK----YKFKAG-- 313 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~----~g~~~~-- 313 (631)
..|+.....|-..+++++|.+.|.+.... +-. ....|.....+|.+. ++++|++.++...+ .| .++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 44556666677777777777777765432 111 122555555555444 77788877776654 23 222
Q ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHHhccc----CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----
Q 036072 314 VDTINCLLENLGRS-KLPKEAQLLFDKLKHRF----TP--NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP----- 381 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~-g~~~~A~~l~~~m~~~~----~p--~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p----- 381 (631)
...+..+...|-.. |+++.|.+.|++..+-+ .+ -...+..+...+.+.|++++|.++|++....-...
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 34566677788888 89999999999875421 11 13456778889999999999999999988653322
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 382 DVV-AHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 382 ~~~-ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+.. .|-..+-++...||...|.+.+++....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 222 2233444667789999999999998764
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.023 Score=52.21 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP--TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
...|..+...+...|++++|+..|++.......+ ...++..+..+|...|++++|...++....... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3455666666777788888888888877643222 234677777888888888888888887776422 1344455555
Q ss_pred HHHH-------HcCCHHHHHHHHHHH
Q 036072 546 GGLI-------SQDRSGEAYKYLEEM 564 (631)
Q Consensus 546 ~~~~-------~~g~~~~A~~ll~~m 564 (631)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 666666555555543
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.14 Score=49.07 Aligned_cols=143 Identities=13% Similarity=-0.016 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH---
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL--- 320 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L--- 320 (631)
..+-+.++..+.-.|.+.-...++++..+.+. .++.....|++.-.+.|+.+.|...|+...+..-..+..+++.+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 46667788888888889888999999888775 47778888888888899999999998877654333443333333
Q ss_pred --HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 321 --LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 321 --l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
...|.-.+++..|...|.++....+-|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 234555677777777777776655556666665555555667888888888888775 4444444433
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.76 E-value=0.088 Score=47.03 Aligned_cols=87 Identities=8% Similarity=-0.019 Sum_probs=43.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+...|++++|.++|+-+.... .-+..-|..|..+|-..|++++|+..|.......+. |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 445555555555555554432 123334444455555555555555555555544332 444455555555555555555
Q ss_pred HHHHHHHHH
Q 036072 558 YKYLEEMLE 566 (631)
Q Consensus 558 ~~ll~~m~~ 566 (631)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.70 E-value=0.034 Score=51.11 Aligned_cols=92 Identities=7% Similarity=-0.140 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~--~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+..+...+...|++++|+..|+........+ ...++..+...|...|+.++|...++......+....+++.+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444555555555555555554432111 1234555555555556666666655555443333334444444444
Q ss_pred H-------hcCCHHHHHHHHH
Q 036072 359 C-------RVKNLMEAGRVWN 372 (631)
Q Consensus 359 ~-------~~g~~~~A~~l~~ 372 (631)
. +.|+++.|...++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 4 4555554444443
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.67 E-value=0.079 Score=47.31 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=64.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.+...+...|++++|..+|+-+...++.+..-|-.|..++-..|++++|+..|....... +-++..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445566777777777777777777666677777777777777777777777777766 4566666677777777777
Q ss_pred hHHHHHHHHHHhc
Q 036072 330 PKEAQLLFDKLKH 342 (631)
Q Consensus 330 ~~~A~~l~~~m~~ 342 (631)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.62 E-value=1.1 Score=46.44 Aligned_cols=321 Identities=12% Similarity=0.099 Sum_probs=176.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC
Q 036072 268 LEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN 347 (631)
Q Consensus 268 ~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~ 347 (631)
+++-.+.++.+...|-.||..+...+..++..+++++|..- ++.-..+|..-|.+-...+++...+.+|.+-..+ ..+
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l~ 108 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SLN 108 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hcc
Confidence 33334456678889999999999999999999999999763 3445667877787777778999999999986543 235
Q ss_pred hhhHHHHHHHHHhcCCHH------HHHHHHHHHH-HcCCCCCH-HHHHHHHHHH---HHcCC------HHHHHHHHHHHH
Q 036072 348 LTTYTVLLGGWCRVKNLM------EAGRVWNEMI-DKGFKPDV-VAHNIMLEGL---LKIGK------RSDAIKLFEVMK 410 (631)
Q Consensus 348 ~~~y~~Li~~~~~~g~~~------~A~~l~~~m~-~~g~~p~~-~ty~~li~~~---~~~g~------~~~A~~ll~~m~ 410 (631)
...|...+..--+.+..- ...+.|+-.. -.++.|-. ..|+..+..+ -..|. +|...+.+.+|.
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 777888777666554221 1222333222 24555543 3344444332 22333 344455555554
Q ss_pred HcCCCC---------------cHHHHHHHH-----------HHHhh----------c-----------------------
Q 036072 411 AKGPSP---------------NVRSYTIMI-----------WKFCK----------Q----------------------- 431 (631)
Q Consensus 411 ~~g~~p---------------~~~~~~~li-----------~~~~~----------~----------------------- 431 (631)
.-.+.. +..|-..++ ..|-. .
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwI 268 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWI 268 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHh
Confidence 321110 001100000 00000 0
Q ss_pred --------------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 036072 432 --------------------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LM 478 (631)
Q Consensus 432 --------------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~ 478 (631)
.+.+|----..+...++-+.|+..... |++..+. ....+. .|
T Consensus 269 kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~sps-L~~~lse~y 343 (660)
T COG5107 269 KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPS-LTMFLSEYY 343 (660)
T ss_pred hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCc-hheeHHHHH
Confidence 111111111122233344444443332 2221111 111111 12
Q ss_pred HhcCChhHHHHHHHHHH----------H----CCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMV----------R----SGF---------------KPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~----------~----~g~---------------~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
.-..+.+.....|+... + .+. ..-...|..+|.+-.+..-++.|..+|-++
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22222222222222111 0 011 011244666777777778899999999999
Q ss_pred HHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 530 IRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 530 ~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
.+.| +.+++..++++|..++. |+..-|..+|+-=+.. +..+..--...+.-+.+.++-+.|..+|+
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9988 67889999999987764 8888899998765543 22333334567777788888877877777
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.58 E-value=0.066 Score=54.31 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHccCHHHHHHHH
Q 036072 245 SRTYNSMMSI--LGRARQFETMVSMLEEMGEKGLLSM----ETFKIAMNAFAAAKERKKAVAIF 302 (631)
Q Consensus 245 ~~~y~~li~~--~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~li~~~~~~g~~~~A~~v~ 302 (631)
...|...+.+ +|+.|+.+.-+.+|+...+.|.-+. .+|.-|.++|.-.+++++|++..
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 4455555544 7888999999999988888887432 36677777788888888887764
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.7 Score=43.90 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
..+...|++++|...|+.+....+.+ ......++.++.+.|++++|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456677777777777766543322 224445566666777777777777776654
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.50 E-value=0.12 Score=44.35 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHccCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC---ChhhHHHHHHHHHhcC
Q 036072 288 AFAAAKERKKAVAIFELMNKYKFKAG--VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP---NLTTYTVLLGGWCRVK 362 (631)
Q Consensus 288 ~~~~~g~~~~A~~v~~~m~~~g~~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p---~~~~y~~Li~~~~~~g 362 (631)
++-..|+.++|+.+|+.....|.... ...+..+...|...|++++|..+|++....++. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33444555555555555555443322 223333444455555555555555554433222 2222222233444555
Q ss_pred CHHHHHHHHHH
Q 036072 363 NLMEAGRVWNE 373 (631)
Q Consensus 363 ~~~~A~~l~~~ 373 (631)
+.++|++.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.49 E-value=0.0095 Score=45.29 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
+.|++++|+.+|+++....+-+..++..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666666556666666666666666666666666666654
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.48 E-value=0.13 Score=56.21 Aligned_cols=67 Identities=13% Similarity=-0.037 Sum_probs=55.6
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 344 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
.+.+..+|.++.-.+...|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++....
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445577888877777789999999999999886 468888999999999999999999999888774
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.42 E-value=0.72 Score=42.09 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHH
Q 036072 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG---CCPDDNS 540 (631)
Q Consensus 464 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t 540 (631)
..|+...--.|..+....|+..+|...|++...--+.-|....-.+.++....+++.+|...++++.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4577777778899999999999999999998876566788888899999999999999999999988753 3344 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHhcCCCchHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD----ELAQKMRFSGKFEVSNVLARWAE 616 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~----~l~~~m~~~g~~~~~~~l~~~~~ 616 (631)
.-.+.+.|...|++.+|..-|+...+. -|+...-......+.++|+.+++. ++++.++.+-..-. +--.+|.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r-kh~reW~~ 239 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR-KHHREWIK 239 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH-HHHHHHHH
Confidence 445778889999999999999999885 556555555667778888776654 45555554443222 33347777
Q ss_pred hhhhhhhc
Q 036072 617 TTKNRVYR 624 (631)
Q Consensus 617 ~~k~~~~~ 624 (631)
....+.++
T Consensus 240 ~A~~~~~q 247 (251)
T COG4700 240 TANERLKQ 247 (251)
T ss_pred HHHHHHHh
Confidence 66555543
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.42 E-value=0.0098 Score=45.23 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|++++|..+|+.+....+-+..++..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555554444444444444555555555555555555555444
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.42 E-value=0.14 Score=55.81 Aligned_cols=144 Identities=10% Similarity=-0.021 Sum_probs=104.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHH
Q 036072 240 GFAHNSRTYNSMMSILGRA-----RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK--------ERKKAVAIFELMN 306 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g--------~~~~A~~v~~~m~ 306 (631)
....|...|...+++.... ++.+.|..+|++..+..+-....|..+..++.... +...+.+..+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456788898888886543 23779999999999998877777776655544331 2234444444433
Q ss_pred hC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 307 KY-KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 307 ~~-g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.. ....+...|..+.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.|++.... .|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 32 234456777777666667899999999999987654 57889999999999999999999999998875 455445
Q ss_pred H
Q 036072 386 H 386 (631)
Q Consensus 386 y 386 (631)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.37 E-value=1.2 Score=48.20 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----------
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD---------- 538 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------- 538 (631)
.+...+..-+-+...+..|-++|..|-+. ..+++.....++|++|..+-+...+. .||+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566667777777776432 24566677777888777776665542 2222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 539 -NSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 539 -~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.-|.-.-.+|.++|+..||..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12333345677888888888888887654
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.15 Score=50.24 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC---CChHHHHHHH
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS---KLPKEAQLLF 337 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~---g~~~~A~~l~ 337 (631)
.+....-++.-...++-|.+.|-.|..+|...|+++.|...|....+.. ..+...+..+..++... .+..++..+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344444555556677788888888888888888888888888888764 55666666666655433 3456778888
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+++....+-|+.+...|...+...|++.+|...|+.|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8887776677778888888888888888888888888875
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.097 Score=50.12 Aligned_cols=134 Identities=10% Similarity=0.057 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM--- 510 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li--- 510 (631)
.+.++++..+...|.+.-...++.+.++...+-++.....|.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45566777777888899999999999998777788888999999999999999999999887654455554544443
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 511 --KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 511 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
..|.-.+++..|...+.++...+.. |+...|.-.-++...|+..+|++.++.|+...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455677899999999988876433 55555544444556799999999999999863
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.09 E-value=0.53 Score=44.75 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
....+...|++++|...|+.+....+. ...+.-.++.++.+.|+++.|...++.+.+.-..-....+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 444556789999999999999887552 45577788889999999999999999987752111112222222222111
Q ss_pred C-------------ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 328 K-------------LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 328 g-------------~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
. ...+|.. .+..++.-|=...-..+|...+..+.+. =...--.+...|.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~--------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIE--------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHH--------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHH--------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1 1122233 3444555555555556666655555432 0111123567788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (631)
+.|.+..|..-++.+.+. -|+.... ..+...++.+|.+.|..+.+
T Consensus 153 ~~~~y~aA~~r~~~v~~~--yp~t~~~-----------~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIEN--YPDTPAA-----------EEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp CTT-HHHHHHHHHHHHHH--STTSHHH-----------HHHHHHHHHHHHHTT-HHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCCchH-----------HHHHHHHHHHHHHhCChHHH
Confidence 889999999999888875 2332221 12344556667777766643
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.08 E-value=0.027 Score=42.38 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=27.8
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
..+...|++++|..+|+++.+..+-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544444445555555555555555555555555543
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.083 Score=51.73 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=79.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
.-..+.+++.+|+..|.+.++.... |.+.|..=..+|++.|+++.|++=.+..+... .-...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4477788999999999998886333 67777888889999999999998888887753 223678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+|++.|++.++. .|+-.+|-.=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999999988864 566666654443
No 196
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=1.4 Score=45.20 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=24.5
Q ss_pred hcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVR---SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+.|.+..|.+.|.+.+. ..++++...|.....+..+.|+..+|+.--++..+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 44445555555555443 23334444444444444455555555554444443
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.03 E-value=0.42 Score=48.77 Aligned_cols=131 Identities=12% Similarity=0.005 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEM----EERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGF-KPTIH 504 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~~~ 504 (631)
.|..|.+.|.-.|+++.|+...+.- ++-|-.. --..+..+-.++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3445555555667777776554432 1222211 123556666777777778887777765432 221 12344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
...+|...|.-..++++|+.++.+-+.. ...-....+..|..+|...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5556777777777777777776643321 111134566677777777777777777665543
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.97 E-value=2.2 Score=43.49 Aligned_cols=321 Identities=13% Similarity=0.094 Sum_probs=187.2
Q ss_pred HHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHc
Q 036072 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG--RARQFETMVSMLEEMGEKGLLSMETFKIAM--NAFAAA 292 (631)
Q Consensus 217 vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~li--~~~~~~ 292 (631)
++...-.++..+.+.|..-.++ ..|..|=.++. -.|+-..|.++-.+..+.=.-+.+..--|+ ++-.-.
T Consensus 61 lv~~iw~sP~t~~Ryfr~rKRd-------rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e 133 (531)
T COG3898 61 LVRSIWESPYTARRYFRERKRD-------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE 133 (531)
T ss_pred HHHHHHhCcHHHHHHHHHHHhh-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc
Confidence 3444455556677777765544 44566666654 357777887776665432222333333333 444556
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 293 KERKKAVAIFELMNKYKFKAGVD--TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~--~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|..+-+..-..-+--...+.+.+...|..|+|+.|+++
T Consensus 134 G~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 134 GDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred CchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999863 2222 2233444445678999988888877665444567888999999999999999999
Q ss_pred HHHHHHc-CCCCCHHHH--HHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 371 WNEMIDK-GFKPDVVAH--NIMLEGLLK---IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 371 ~~~m~~~-g~~p~~~ty--~~li~~~~~---~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
++.-+.. -+.++..-- ..|+.+-.. .-+...|...-.+..+ +.||..--. -.-..++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaa--------------v~AAralf 274 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAA--------------VVAARALF 274 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHH--------------HHHHHHHH
Confidence 9887754 244443221 222222111 1233444443333332 334422111 11245677
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPT-IHTYNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~-~~t~~~Li~~~~~~g~~~~A 522 (631)
+.|+..++-.+++.+-+...-|+. + ..|....--+.++.-+++..+ ..++|| ......+..+-...|++..|
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~i--a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDI--A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHH--H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHH
Confidence 778888888888888776544442 2 223333333344444444433 123443 44555666777777887777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCC
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLIS-QDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~ll~~m~~~g~~p 571 (631)
..--+.... ..|....|-.|.+.-.. .|+-.++...+-+.+...-.|
T Consensus 349 Ra~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 349 RAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 666555544 35666677666655443 377788887777776653333
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.97 E-value=0.028 Score=42.26 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=33.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
..+.+.|++++|...|+++.+..+-+...+..+..++...|++++|...|+.+.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666666666666665555556666666666666666666666666543
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.94 E-value=0.043 Score=41.78 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEML 565 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~ll~~m~ 565 (631)
+|..+...+...|++++|+..|++.++.... +...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 3334444444444444 3444444444443
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.93 E-value=0.48 Score=40.62 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=26.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+-..|+.++|+.+|++..+.|.... ...+-.+...|...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555443332 22334444455555555555555555544
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.88 E-value=0.2 Score=49.55 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTINCL 320 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~~L 320 (631)
..|+..+..+.+.|++++|...|+.+.+..+-+ +.++.-+..+|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345555555455566666666666666554422 3455555555555666666666665555431 01122333334
Q ss_pred HHHHHcCCChHHHHHHHHHHhcc
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~ 343 (631)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.048 Score=48.78 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----CCCCcCHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-----YKFKAGVDTI 317 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~-----~g~~~~~~~~ 317 (631)
......++..+...|+++.|..+.+.+....+.+...|..+|.+|...|+...|+++|+.+.+ .|+.|+..+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456667777788899999999999999999999999999999999999999999999988854 4888877654
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.81 E-value=0.041 Score=41.86 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHh
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNK 307 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~ 307 (631)
..+|..+-..+...|++++|+..|++..+.++.+..+|..+..++...| ++++|++.|+..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4566666666677777777777777766666656666666666666666 56666666666554
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.63 Score=45.93 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG---NYEMGRKVWDEMIRRGCCPDDNSYTV 543 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (631)
|...|..|-.+|...|+.+.|..-|.+..+.. .+|...+..+..++.... +..++..+|+++...... |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 66677777777777777777777777776642 334555555555554432 345667777777765433 5556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6666777777777777777777653
No 206
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.63 E-value=1 Score=38.74 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=80.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT---YNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~Li~~~~~~g~~~~A 522 (631)
.|.+++..+++.+.... -+..-||.+|--....-+-+-..++++.+-+ -.|... .-.++.+|+..|.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc----
Confidence 46777788888777654 2555666666555555554555555554432 222211 2234444444433
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+....+..+..+...|+-+.-.++++++...+ .+++.....+..+|.+.|+..++.+++++.-++
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33445556777888899998889998887643 677888889999999999999999999999888
Q ss_pred CCC
Q 036072 603 GKF 605 (631)
Q Consensus 603 g~~ 605 (631)
|..
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 853
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.56 E-value=0.12 Score=46.20 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-----KGFKPDVVA 385 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 385 (631)
...++..+...|++++|..+...+....+.|...|..+|.+|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566667777777777776666666666777777777777777777777766542 366666544
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.53 E-value=3.3 Score=42.24 Aligned_cols=106 Identities=18% Similarity=0.068 Sum_probs=72.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
.|.-+...|+...|.++-.+. . .|+..-|..-+.+++..+++++-.++... +-++.-|..++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 355556667777777775554 2 26778888888888888888877765432 1233567788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
..+|..+...+. +..-+..|.+.|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888777621 234566778888888887665443
No 209
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.49 E-value=0.58 Score=46.01 Aligned_cols=88 Identities=15% Similarity=-0.021 Sum_probs=62.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 036072 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~ 334 (631)
+.+.++|++|+..|.+..+..+.+..-|..=..+|.+.|.++.|++-.+..+... +-...+|..|-.+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 4556777777777777777766666666667777777777777777777776654 344566777777777777777777
Q ss_pred HHHHHHhcc
Q 036072 335 LLFDKLKHR 343 (631)
Q Consensus 335 ~l~~~m~~~ 343 (631)
+.|.+..+-
T Consensus 170 ~aykKaLel 178 (304)
T KOG0553|consen 170 EAYKKALEL 178 (304)
T ss_pred HHHHhhhcc
Confidence 777766654
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.41 E-value=0.21 Score=43.26 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 036072 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 499 ~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~ 548 (631)
..|+..+..+++.+|+..|++..|.++.+...+ .++..+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345555555555555555555555555555543 24444555555555433
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.36 E-value=0.33 Score=48.08 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
.|...+..+.+.|++++|+..|+.+.+.- |+ ...+..+...|...|++++|...|+.+.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34443333344455555555555554432 11 12334444444444555555555444443
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.27 E-value=1.7 Score=39.74 Aligned_cols=131 Identities=15% Similarity=0.035 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhccc--CCChhhHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVL 354 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~p~~~~y~~L 354 (631)
++..-...|..+....|+..+|...|++...--+--|....-.+.++....+++..|...++.+-+.. .-++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34445566778888888888888888888876666777788888888888888888888888875421 1133345566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
.+.+.-.|.+.+|+.-|+...+. -|+...-...-..+.+.|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 78888888999899988888875 455444444445566777766665544444
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=4.4 Score=41.80 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=112.6
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 346 PNLTTYTVL-LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG--LLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 346 p~~~~y~~L-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
|.-.+|-.+ ..++.-.|++++|.++--...+.. ....+...+++ +.-.++.+.|...|++.+.. .|+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 333445444 356667788888888776666542 12233334433 33467788888888887664 44433322
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER---GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 423 ~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 499 (631)
++-...- .-..+..=.+-..+.|.+..|.+.+.+.... .+.++...|.....+..+.|+.++|+.-.++..+..
T Consensus 241 ~~~~~~k--~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD- 317 (486)
T KOG0550|consen 241 SASMMPK--KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID- 317 (486)
T ss_pred hHhhhHH--HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-
Confidence 2211110 1112333345567889999999999998754 456667778888888899999999999988887642
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 500 KPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 500 ~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+. +..|..-..++...++|++|.+-|+...+.
T Consensus 318 -~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 318 -SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 222333345566678899999999888764
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.22 E-value=4.2 Score=41.58 Aligned_cols=262 Identities=15% Similarity=0.069 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 242 AHNSRTYNSMMSIL--GRARQFETMVSMLEEMGEKGLLSMETF----KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 242 ~p~~~~y~~li~~~--~~~g~~~~A~~l~~~m~~~g~~~~~~~----~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
.-|....-.++.+- .-.|+++.|.+-|+.|.. ++++- ..|.-..-+.|..+.|.+.-+..-..- +.-..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 33445444455443 347999999999999975 33433 333333456789999998888877653 33456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH-H
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLT--TYTVLLGGWCR---VKNLMEAGRVWNEMIDKGFKPDVVAH-N 387 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~~~--~y~~Li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ty-~ 387 (631)
.+...+...+..|+++.|+++++.-+.. +.++.. .-..|+.+-+. .-+...|...-.+..+ +.||..-- .
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 7788999999999999999999987643 444443 22333333221 1244455554444433 56664432 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPP 466 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 466 (631)
.-..++.+.|++.++-.+++.+-+....|++.. +-.+.+.|+ .+..-++..... .++|
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~-------------------lY~~ar~gd--ta~dRlkRa~~L~slk~ 326 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIAL-------------------LYVRARSGD--TALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHHH-------------------HHHHhcCCC--cHHHHHHHHHHHHhcCc
Confidence 344788999999999999999988766666432 111223343 233333332211 2333
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Q 036072 467 -DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ-TGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 467 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~-~g~~~~A~~~~~~m~~~g 533 (631)
+......+..+-...|++..|..--+..... .|....|-.|.+.-.- .|+-.++...+.+..+..
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4456666777778889998887776666553 6888888777776554 599999999988887653
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.17 E-value=6.3 Score=43.27 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=118.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--ccCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTP--------NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~--~~~p--------~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
.|.+..|..|.......-.++.|+..|-+..+ +++. +...-.+=|. +--|++++|+++|-+|-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchh---
Confidence 45666666666655555555555555554432 1110 0000111111 2236777777777666554
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV----RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
...|..+.+.|++-.+.++++. .|-..|. ..++.+=..+. +-..|......|.+.|+.+.-.+.+
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa--~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFA--EMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccchHhHHHHH
Confidence 2345556666666665555532 1111111 11222211111 2234455555555555554433332
Q ss_pred HHHHH--------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 457 KEMEE--------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 457 ~~m~~--------~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
-.+.. ..++-+....-.+..++...|.-++|.+.|-+-. .| .+.+..|...++|.+|.++-+.
T Consensus 833 y~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 1244466667778888889999888888775432 12 2446677888888888887664
Q ss_pred HHHcCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 529 MIRRGCCPDDNSY--------------TVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 529 m~~~g~~p~~~t~--------------~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
..-. ...+. ---|..+.++|+.-+|.+++.+|.+.
T Consensus 904 ~~l~----qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 904 FQLP----QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred ccch----hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 4321 11111 11244566778877788888888643
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.14 E-value=3.8 Score=42.43 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
.+-..+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35566777888888888888888888888876
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.12 E-value=0.47 Score=41.09 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=47.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-GMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~g~ 588 (631)
....|+..+..+++.+|+..|++..|+++++...+. +++.+...|..|+.-....-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999999998764 788888899888877655544
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.05 E-value=0.073 Score=41.66 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPD-DNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
+|+.+..+|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444555555555544444321 10 011 233444444444444444444444443
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.03 E-value=0.15 Score=39.22 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=43.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
..|.+.++++.|+++++.+...++.+...+.....++...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777788888888888877777777777777777778888888888877777653
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.02 E-value=2.5 Score=45.85 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=129.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHh----cC
Q 036072 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPD-----GLTYNALIKLMKI----QK 482 (631)
Q Consensus 413 g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~li~~~~~----~g 482 (631)
|+.--..+++.+|+.+ +..+..++...+=.|+-+.+++.+.+-.+. ++.-. .-.|..++..++. ..
T Consensus 172 gv~~G~G~f~L~lSlL----Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~ 247 (468)
T PF10300_consen 172 GVYFGFGLFNLVLSLL----PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDV 247 (468)
T ss_pred hHHHHHHHHHHHHHhC----CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 3333344444444432 345667788888889999999999887654 22211 1234555554443 45
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 483 MPDEAVRIYKEMVRSGFKPTIHTYNMI-MKSYFQTGNYEMGRKVWDEMIRRG---CCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 483 ~~~~A~~l~~~m~~~g~~p~~~t~~~L-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
..+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|++..... .+.....+--+...+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 678899999999886 5666555433 455667999999999999766421 1112344555666778889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh-----cCCC-chHHHHHHHHHhhhhh
Q 036072 559 KYLEEMLEKGMKAPVLDYNKFAADL-SRAGRS-------YVLDELAQKMRF-----SGKF-EVSNVLARWAETTKNR 621 (631)
Q Consensus 559 ~ll~~m~~~g~~p~~~~~~~li~~~-~~~g~~-------~~A~~l~~~m~~-----~g~~-~~~~~l~~~~~~~k~~ 621 (631)
+.|..+.+.. .-+..+|..+..+| ...|+. ++|.+++++.+. .|+. ++.....+..+..+.+
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999864 33455555444433 566777 888899888754 3333 4455555555555544
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.8 Score=38.23 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~ 291 (631)
.+|..+...+....+..+++.+...+..++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 344444444444455555554444443344444445544444
No 222
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.91 E-value=10 Score=44.37 Aligned_cols=106 Identities=9% Similarity=-0.008 Sum_probs=58.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
.-+.....+++|.-.|+..-+ ..-.+.+|-.+|++.+|+.+..++....-. -..+-..|+.-+...++.-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccch
Confidence 334444555555555544321 112355666778888888777776532100 1112245666777778877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
+|-++..+.... ..-.+..|++...+++|..+....
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 777777766543 122344456666677776655443
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.90 E-value=2.2 Score=36.80 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 535 (631)
+.......+..+...|.-++-.+++.++.+.+ .++....-.+..+|.+.|+..++.+++.+..++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666777778888888888888877533 667777778888888888888888888888887764
No 224
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.86 E-value=11 Score=44.27 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=59.2
Q ss_pred CCCHHHHHHHH----HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 465 PPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540 (631)
Q Consensus 465 ~p~~~t~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (631)
.|+...+..+. ..+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|+.+..++... -|...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34554444444 444566777777777665432 234567888889999988888877542 13222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 541 --YTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 541 --~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
-..|+.-+...++.-+|-+++.+...
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 25677788889999999888887765
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=3 Score=46.69 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE----EMLEKGMKAPVLDYNKFAAD 582 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~----~m~~~g~~p~~~~~~~li~~ 582 (631)
--++..++...+.+.+..+.+..-+. ++..|..++..+++.+..+...+... .......-|.. .++..
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl----~VL~~ 780 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL----HVLQI 780 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH----HHHHH
Confidence 34667777888888888877766554 88899999999998886655554444 44444444433 34455
Q ss_pred HHhcCC
Q 036072 583 LSRAGR 588 (631)
Q Consensus 583 ~~~~g~ 588 (631)
+++.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 555554
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.62 E-value=6.5 Score=40.76 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=109.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERG---CPPDGLTYNALIKLMKI---QKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
-.++-+|....+++...++++.|...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345667888899999999999998651 11111211223335556 899999999999977766688899998888
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH---HH-HHHCC---CC
Q 036072 511 KSYFQT---------GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR-S---GEAYKYL---EE-MLEKG---MK 570 (631)
Q Consensus 511 ~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~---~~A~~ll---~~-m~~~g---~~ 570 (631)
..|-.. ...++|...|.+.-+. .||..+=-.+...+...|. . .+..++- .. +.++| -.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 877531 1356777777766543 2333221112222222332 1 2333332 22 22333 24
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCchHHHHHHH
Q 036072 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG--KFEVSNVLARW 614 (631)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~~~~~~l~~~ 614 (631)
.+...+.+++.++.-.|+.+.|.+.+++|.... .+.+.+.+...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 567778999999999999999999999987643 23344444433
No 227
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.59 E-value=0.21 Score=38.34 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=27.3
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|.+.+++++|.++++.+..-.+.+...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555444444444555555555555555555555555554
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.54 E-value=0.62 Score=45.28 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 484 (631)
+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3456789999999999999999999999999777654
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.54 E-value=3.3 Score=44.92 Aligned_cols=216 Identities=16% Similarity=0.146 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHH
Q 036072 351 YTVLLGGWCRVKN--LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN-VRSYTIMIWK 427 (631)
Q Consensus 351 y~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~-~~~~~~li~~ 427 (631)
++..=++|.+..+ +-+...-+++|+++|-.|+... +...|+-.|++.+|.++|.+- |...- ...|+-|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDl--- 671 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDL--- 671 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHH---
Confidence 3334444544443 3344455677778887787653 334555667777777777542 22210 0111100
Q ss_pred HhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------HHHCCC
Q 036072 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE--RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE------MVRSGF 499 (631)
Q Consensus 428 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~------m~~~g~ 499 (631)
. .--+.+-|...|..++-..+.++-.+ ..++-. .+....+...|+.++|..+.-+ +.+-+-
T Consensus 672 ------R-MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 672 ------R-MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred ------H-HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 0 00122333344444444443333211 112111 1233445567888877765421 222222
Q ss_pred C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 500 K---PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 500 ~---p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
+ .+..+...+..-+.+...+..|.++|..|-+. ..++......+++.+|..+-+...+. .|| .|
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy 807 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VY 807 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--cc
Confidence 2 23445555555555667788888888887532 34667778899999999888766542 343 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 036072 577 NKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~~~m 599 (631)
.-...-++...++++|.+.|.+.
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHh
Confidence 56677788888999999988765
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.35 E-value=0.88 Score=48.63 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=75.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~ 335 (631)
.-.++++.+.++.+.-.-..-.+....+.++..+-+.|..+.|+++-..-. .-.+...+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHH
Confidence 345677776665541111111345567777777777788777777643221 12344556777777766
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
+.+++. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 340 ~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 654443 456777777777777777777777777654 5666667777777777666666665544
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.33 E-value=6.4 Score=39.43 Aligned_cols=160 Identities=10% Similarity=0.052 Sum_probs=97.4
Q ss_pred HhcCChhHHHHHHHHHHHCC-CCCHH--------HHHHHHHHHHHcc-CHHHHHHHHHHHHhC--------CCCcC----
Q 036072 256 GRARQFETMVSMLEEMGEKG-LLSME--------TFKIAMNAFAAAK-ERKKAVAIFELMNKY--------KFKAG---- 313 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g-~~~~~--------~~~~li~~~~~~g-~~~~A~~v~~~m~~~--------g~~~~---- 313 (631)
.+.|+++.|..++.+..... ..++. .|+.-... ...+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999998887654 33332 23333333 3344 787777766655443 11222
Q ss_pred -HHHHHHHHHHHHcCCChH---HHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 314 -VDTINCLLENLGRSKLPK---EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 314 -~~~~~~Ll~~~~~~g~~~---~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
..++..++.+|...+..+ +|..+++.+....+-...+|-.-+..+.+.++.+++.+++..|... +.-....+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 345667778888777655 4555666665555444667767788888889999999999999986 22123345554
Q ss_pred HHHH---HHcCCHHHHHHHHHHHHHcCCCCcH
Q 036072 390 LEGL---LKIGKRSDAIKLFEVMKAKGPSPNV 418 (631)
Q Consensus 390 i~~~---~~~g~~~~A~~ll~~m~~~g~~p~~ 418 (631)
+..+ ... ....|...+..+....+.|..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 5444 332 334566666666555455444
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.32 E-value=2.8 Score=36.94 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=74.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
.++..+...+.......+++.+...+. .+...++.++..|++.+. .+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 345556666778888888888877763 567788888888876643 444444442 112223344677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 584 (631)
.++++..++.++.. |...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777776532 12223333333 6777777766641 24456666665554
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=94.30 E-value=3.1 Score=37.51 Aligned_cols=86 Identities=10% Similarity=-0.034 Sum_probs=42.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
...|++++|..+|.-+.-.+. -+..-+..|..+|-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 355556666666555554331 23334445555555555566665555544433221 3333333445555555555555
Q ss_pred HHHHHHHH
Q 036072 559 KYLEEMLE 566 (631)
Q Consensus 559 ~ll~~m~~ 566 (631)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555554
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.28 E-value=0.12 Score=40.31 Aligned_cols=63 Identities=24% Similarity=0.180 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEK--GMK---AP-VLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 538 ~~t~~~li~~~~~~g~~~~A~~ll~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
..+|+.+...|...|++++|++.|++.++. ... |+ ..++..+..++...|++++|++++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357888999999999999999999998754 122 22 4568899999999999999999998764
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.19 E-value=5.8 Score=38.45 Aligned_cols=80 Identities=16% Similarity=-0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
...|+..+.. .+.|++++|.+.|+.+..+.+-+ ..+--.++.++.+.+++++|+..+++....-..-....|..-|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444444433 46788888888888887654433 3455666777788888888888888877653332333455555
Q ss_pred HHHH
Q 036072 391 EGLL 394 (631)
Q Consensus 391 ~~~~ 394 (631)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5555
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.18 E-value=3.5 Score=44.63 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=110.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHH
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEMEE 461 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 461 (631)
+..++....-.|+-+.+++++.+..+.+-.-.+..--.| -.|...+..++. ....+.|.+++..+.+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~L---------L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~ 261 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVL---------LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK 261 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHH---------HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence 445666667778999999998876654221122211111 234444443333 4678999999999988
Q ss_pred cCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 036072 462 RGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSG--F-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537 (631)
Q Consensus 462 ~g~~p~~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (631)
+ -|+...|... -+.+...|++++|++.|++..... . ......+--+.-++.-..+|++|.+.|..+.+..-. +
T Consensus 262 ~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-S 338 (468)
T PF10300_consen 262 R--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-S 338 (468)
T ss_pred h--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-H
Confidence 6 4666666543 345678899999999999766421 1 123345566777888999999999999999975322 4
Q ss_pred HHHHHHHHHHHH-HcCCH-------HHHHHHHHHHHH
Q 036072 538 DNSYTVLIGGLI-SQDRS-------GEAYKYLEEMLE 566 (631)
Q Consensus 538 ~~t~~~li~~~~-~~g~~-------~~A~~ll~~m~~ 566 (631)
..+|..+..+|. ..|+. ++|.++|.+...
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445554444433 56777 888888887653
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.00 E-value=6.4 Score=38.19 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
...|+.-+..+ +.|++++|.+.|+.+..+.+. ...+.-.++.++-+.++++.|+..+++..+.-..-....|..-|
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 44566555544 679999999999999988773 56688888899999999999999999998763222333344444
Q ss_pred HHHHc-------CCChHHHHHHHHHHh---cccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 036072 322 ENLGR-------SKLPKEAQLLFDKLK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH-NIML 390 (631)
Q Consensus 322 ~~~~~-------~g~~~~A~~l~~~m~---~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty-~~li 390 (631)
.+++. ..|...+...|..+. .++|.+..+ .+|...+..+... ..-+ -.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~-----LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA-----LAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH-----HHHHHHHHH
Confidence 44432 234444444444443 333322211 1222222222111 0001 1345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
+.|.+.|.+..|..-+++|.+. ..-+..+. ..+-.+..+|...|-.++|.+.-.-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~------------eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVR------------EALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchH------------HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 6788888888888888888876 22222222 23334556666667777766665555543
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.95 E-value=7.9 Score=39.07 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhhcCHH
Q 036072 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--IG----KRSDAIKLFEVMKAKGP---SPNVRSYTIMIWKFCKQNAA 434 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~ll~~m~~~g~---~p~~~~~~~li~~~~~~~~~ 434 (631)
+++...+++.|.+.|+.-+..+|-+..-.... .. ...+|..+|+.|++... .++...+..++..-.. +..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~-~~e 156 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSE-DVE 156 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccc-cHH
Confidence 45667788889998988888777653333332 22 35688889999988642 2444444444322111 000
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL--TYNALIKLMKIQKM--PDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
.-.+.++.+|+.+.+.|...+.. ....++..+..... ..++.++++.+.+.|+++....|..+.
T Consensus 157 ------------~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ------------ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred ------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 02456677777777777655432 33333333222222 346778888888888887776665554
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.80 E-value=0.77 Score=44.63 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 036072 467 DGLTYNALIKLMKI-----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG----------------NYEMGRKV 525 (631)
Q Consensus 467 ~~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g----------------~~~~A~~~ 525 (631)
|...|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444432 2344444445555555666666666655555432221 12346677
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRS 554 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 554 (631)
+++|...|+.||..+-..|++++.+.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 77777777777777777777777665544
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=4.7 Score=38.65 Aligned_cols=212 Identities=15% Similarity=0.115 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|.....+|-...+|++|...+.+..+..-.+...|+ ....++.|.-+.++|.+. .--+..|+.....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 456667777788888899888877776543222222221 122334444444444443 22234455666778
Q ss_pred HcCCChHHHHHHHHHHh---cccCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 325 GRSKLPKEAQLLFDKLK---HRFTPNLT--TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~---~~~~p~~~--~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
..+|..+.|-..+++.- +...|+.. .|.--+...-..++...|.+++ ...-..+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---------------gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---------------GKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---------------HHhhhHhhhhHHh
Confidence 88888888777777643 33334322 2333333333333333333333 3333455555666
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG---CPPDGLTYNALIK 476 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~ 476 (631)
++|-..+..-.. ..-...+|+. .-..|-+.|-.|....++..|.+.++.--+.+ -.-+..+...||.
T Consensus 167 ~Eaa~a~lKe~~--~~~~~~~y~~--------~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 167 TEAATAFLKEGV--AADKCDAYNS--------QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hHHHHHHHHhhh--HHHHHhhccc--------HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 666554433211 0001111111 11224445556666678888888888754432 1224567777887
Q ss_pred HHHhcCChhHHHHHH
Q 036072 477 LMKIQKMPDEAVRIY 491 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~ 491 (631)
+| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 77 667777766655
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.98 Score=46.36 Aligned_cols=96 Identities=18% Similarity=0.023 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
..+++.|.-+|.+.+++..|++..+....-.++|+....-=..+|...|+++.|+..|+.+.+. .|+..+-..-|..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3445566667777777777777777766655667766666677777777777777777777763 55544444433333
Q ss_pred H-HcCC-HHHHHHHHHHHHH
Q 036072 394 L-KIGK-RSDAIKLFEVMKA 411 (631)
Q Consensus 394 ~-~~g~-~~~A~~ll~~m~~ 411 (631)
. +..+ .+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3 2222 3344566666654
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=9 Score=37.93 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=29.5
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
...|+..+|..+|.......+-+...--.|..+|...|+.+.|..++..+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3455566666666655544344445555556666666666666666665543
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.35 E-value=4 Score=41.19 Aligned_cols=153 Identities=13% Similarity=0.224 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKI--QK----MPDEAVRIYKEMVRSGF---KPTIHTYNMIMKSYFQTGN- 518 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~t~~~Li~~~~~~g~- 518 (631)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677888999999999888777664443333 22 34679999999998642 2445566666543 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 036072 519 ---YEMGRKVWDEMIRRGCCPDDN--SYTVLIGGLISQDR--SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR--- 588 (631)
Q Consensus 519 ---~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~--~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~--- 588 (631)
.+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888877765432 33333333222222 45788999999999999887777655443333333
Q ss_pred -HHHHHHHHHHHHhcC
Q 036072 589 -SYVLDELAQKMRFSG 603 (631)
Q Consensus 589 -~~~A~~l~~~m~~~g 603 (631)
.+...++.+.+++..
T Consensus 236 ~~~~i~ev~~~L~~~k 251 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQK 251 (297)
T ss_pred HHHHHHHHHHHHhhCc
Confidence 234445555555443
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.28 E-value=12 Score=39.18 Aligned_cols=137 Identities=10% Similarity=0.067 Sum_probs=81.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-----CHHHH-HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHc
Q 036072 255 LGRARQFETMVSMLEEMGEKGLL-----SMETF-KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN--LGR 326 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~-----~~~~~-~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~--~~~ 326 (631)
+-+.+++.+|.++|.+..+.--. ..+++ +.++++|.. ++.+.....+....+.- | ...|-.|..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 34678889999998888655332 33333 445566554 45555555555555432 2 2334444433 245
Q ss_pred CCChHHHHHHHHHHhcccC---------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFT---------------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF----KPDVVAHN 387 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~---------------p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~ty~ 387 (631)
.+++.+|.+.+..-.++.. +|...=+..+..+...|++.++..+++.|...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 6788888887776554311 1222235566777788888888888887776432 35777777
Q ss_pred HHHHHHHH
Q 036072 388 IMLEGLLK 395 (631)
Q Consensus 388 ~li~~~~~ 395 (631)
.++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 76655554
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.25 E-value=9.9 Score=38.04 Aligned_cols=162 Identities=9% Similarity=0.049 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMD---IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
.++..++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45566778888777654 556666666544222 34555556777777899999999999999862 21334555555
Q ss_pred HHH---HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HHHH---HHHcCC------HHHHHHHHHHHHH-CCCCCCHHH
Q 036072 511 KSY---FQTGNYEMGRKVWDEMIRRGCCPDDN-SYTV-LIGG---LISQDR------SGEAYKYLEEMLE-KGMKAPVLD 575 (631)
Q Consensus 511 ~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~-li~~---~~~~g~------~~~A~~ll~~m~~-~g~~p~~~~ 575 (631)
..+ ... ....|...++.++...+.|... .... ++.- ..+.++ .+...+++..... .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 555 333 3456777777776655555553 1111 1111 112111 4444455553332 233333333
Q ss_pred HH---HH----HHHHHhcCCHHHHHHHHHH
Q 036072 576 YN---KF----AADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 576 ~~---~l----i~~~~~~g~~~~A~~l~~~ 598 (631)
-. ++ +..+.+.++++.|.++++-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 22 3446778999999999873
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.16 E-value=1.2 Score=46.80 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777777888888888888888887775 4553 35777788888888888888888887764
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=93.13 E-value=0.7 Score=41.62 Aligned_cols=85 Identities=7% Similarity=0.002 Sum_probs=54.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l 336 (631)
..|++++|..+|.-+...++.+..-+..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 35777777777777776666666666666666666777777777776665544 23444444555666666777777776
Q ss_pred HHHHhc
Q 036072 337 FDKLKH 342 (631)
Q Consensus 337 ~~~m~~ 342 (631)
|....+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 666554
No 248
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=16 Score=40.87 Aligned_cols=162 Identities=11% Similarity=0.077 Sum_probs=97.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKA---GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~---~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
|+-+.+.+.+++|+++.+..... .+ ........|+.+.-.|++++|-...-.|... +..-|.-.+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhcccc
Confidence 66777788888888777655443 33 3455667788888888888888777777654 5666776666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc------CHHHH
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------NAAVY 436 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~------~~~~~ 436 (631)
+......++ ....-..+...|..++..+.. .+.. .+++...+ ..++...-..++++.-.. +....
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~--Wp~~Lys~l~iisa~~~q~~q~Se~~~L~ 508 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKE--WPGHLYSVLTIISATEPQIKQNSESTALL 508 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHh--CChhhhhhhHHHhhcchHHHhhccchhHH
Confidence 654433322 221122456678888888776 2222 22222222 223333333333222111 33445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
..|+..|...+++..|+.++-..++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 5588889999999999988877654
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.09 E-value=2 Score=37.73 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
..|+.- ....+.|++++|.+.|+.+..+-+ ....+.-.++.+|.+.+++++|+..++..++....-....|...+.
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344433 344567999999999999998866 3567888899999999999999999999998753322344544455
Q ss_pred HHH
Q 036072 323 NLG 325 (631)
Q Consensus 323 ~~~ 325 (631)
+++
T Consensus 91 gL~ 93 (142)
T PF13512_consen 91 GLS 93 (142)
T ss_pred HHH
Confidence 443
No 250
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.09 E-value=2.6 Score=44.30 Aligned_cols=65 Identities=14% Similarity=0.000 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME---TFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
+...|+.+-.+|.+.|++++|+..|++..+.++-+.+ +|..+..+|...|+.++|++.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778889999999999999999999999988876553 5899999999999999999999999875
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=6.5 Score=37.74 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRG---CCPDDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
.|...|-.|....++..|.+.++.-...+ -.-+..+...|+.+|- .|+.+++.+++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 35566666777778888888887744321 1224566777777664 47777666554
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.77 E-value=2.4 Score=45.36 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=100.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
-.+.++..+-+.|..+.|+.+..+-..+ .....+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3556677888889999999887654332 23445789999998876543 36789999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
..|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....| .++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 99999999999987653 4556666888899999888888888887 56666777777888877776
Q ss_pred HHHHHHhcCCCchHHHHH
Q 036072 595 LAQKMRFSGKFEVSNVLA 612 (631)
Q Consensus 595 l~~~m~~~g~~~~~~~l~ 612 (631)
++.+ .|..+.+.+++
T Consensus 424 lL~~---~~~~~~A~~~A 438 (443)
T PF04053_consen 424 LLIE---TGRLPEAALFA 438 (443)
T ss_dssp HHHH---TT-HHHHHHHH
T ss_pred HHHH---cCCchHHHHHH
Confidence 6543 45445555544
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=5.8 Score=39.26 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=93.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
.......|++.+|..+|........-+.+.-..+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34456778999999999988887776777888889999999999999999988765421222222222344444444444
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--GFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~ 398 (631)
+...+-..... .+.|...-..+...+...|+.++|.+.+-.+..+ |.. |...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 33333333332 2336677777888888889999888877666654 333 44455566665555553
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=2.8 Score=41.89 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=94.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY----NMIMKSYFQTGNYEM 521 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~Li~~~~~~g~~~~ 521 (631)
.|+..+|-..++++.+. .+-|...++..=.+|..+|+.+.-...++++... ..++...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46777777777777765 4447777777777888888888888888777753 23333222 333344457788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK---GMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
|++.-++..+.+.. |.-.-.++...+...|+.+++.++..+-.+. +.-.-...|=...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888777765422 5555566666677778888888777654322 1111122344445555666778888887764
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=2.6 Score=43.39 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=69.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEER-----GCPP---------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~-----g~~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 506 (631)
+.|.+.|++..|..-|+..... +..+ -..+++.+..+|.+.+++..|++..+..++.+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3466678888888777764431 1111 12245555666667777777777777666654 4555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-GEAYKYLEEMLE 566 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~ll~~m~~ 566 (631)
..=..+|...|+++.|+..|+++++.... |...-+.|+..-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666677777777777777777664322 333333344333333333 233555555543
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=92.22 E-value=7 Score=41.32 Aligned_cols=162 Identities=8% Similarity=-0.008 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 448 RMDIVYDLLKEMEER-GCPPD-GLTYNALIKLMKI---------QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~-g~~p~-~~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
..+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++.++..+.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467888899988722 34554 3445544443322 123456777888888876 56788888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAPVLDYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l 595 (631)
++++.|...|++....+.. ...+|......+.-.|+.++|.+.+++..+.. .+.-.......++.|+..+ .++|..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 9999999999999876432 34455555555677899999999999977753 1222333444455666554 6777777
Q ss_pred HHHHHhcC--CCchHHHHH
Q 036072 596 AQKMRFSG--KFEVSNVLA 612 (631)
Q Consensus 596 ~~~m~~~g--~~~~~~~l~ 612 (631)
+-+-.++. .....|++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~ 448 (458)
T PRK11906 430 YYKETESESHRVIIDNILK 448 (458)
T ss_pred HhhccccccchhhHHHHHH
Confidence 76554443 345666663
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.17 E-value=20 Score=38.93 Aligned_cols=341 Identities=9% Similarity=-0.001 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
.+...|+.+|.---...+.+.+..++..+...-+.--.-|......=.+.|..+.+.++|++.+.. ++.+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 344556666655555555566777777777665554455666666667778889999999888874 5677777777766
Q ss_pred HHHc-CCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 036072 323 NLGR-SKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--- 395 (631)
Q Consensus 323 ~~~~-~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~--- 395 (631)
.+.. .|+.+.....|+...+- .--+...|...|..-...+++.....+|+...+. ...-|+..-.-|.+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 5544 47777888888887652 2234567888888888888999999999988874 22223322222221
Q ss_pred ------cCCHHHHHHHHHHHHHc---C-CCCcHHHHHHHHHHHhhc---CHHHH-------HHHHHHHhccCCHHHHHHH
Q 036072 396 ------IGKRSDAIKLFEVMKAK---G-PSPNVRSYTIMIWKFCKQ---NAAVY-------TCLITGFGNRRRMDIVYDL 455 (631)
Q Consensus 396 ------~g~~~~A~~ll~~m~~~---g-~~p~~~~~~~li~~~~~~---~~~~~-------~~li~~~~~~g~~~~A~~l 455 (631)
....+++.++-...... + ..+.......-+...-.. -.... ..--.+|.......+....
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 12233333333222210 0 001111111111110000 00000 0001111122222222223
Q ss_pred HHHHHHc---CCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 456 LKEMEER---GCP----PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 456 ~~~m~~~---g~~----p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
|+.-... .++ ++..+|..-+.--...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 3332221 122 23457777788788888888888888877532 111123344444444455888888877776
Q ss_pred HHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 036072 529 MIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 529 m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~ 593 (631)
..+.-++ |....+.+.+ .-..|++..|..+++...+.- |+... -..-+....+.|+.+.+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 6654332 2333333332 234679999999999888763 44332 234456667788887777
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.10 E-value=15 Score=39.15 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=24.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
|..++.+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444455555555555544321 1112233444455555555555555555444
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=2 Score=47.97 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HHCC----------C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEM----GEKG----------L---LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m----~~~g----------~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
....+.++.+|...+++-.-.-+++.. ...+ + ........-+..+.+...++-|+.+-+.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-- 360 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-- 360 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence 345567777777776654333333332 2222 1 12234555666677777777776654332
Q ss_pred CCCCcCHHHHHHHHHHH----HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 308 YKFKAGVDTINCLLENL----GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383 (631)
Q Consensus 308 ~g~~~~~~~~~~Ll~~~----~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 383 (631)
..+..+...++..| .+.|++++|...|-+-..-..|. .+|.-|....++.+-..+++.+.+.|+. +.
T Consensus 361 ---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~ 431 (933)
T KOG2114|consen 361 ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NS 431 (933)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cc
Confidence 23444444444433 45677777777666554433332 3455566666777777777777777765 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 384 VAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 384 ~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
..-..|+.+|.+.++.++..++.+.-
T Consensus 432 dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 432 DHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 44566777788877777766665543
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.82 E-value=1.8 Score=42.89 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-----KGMKAPVLDYNK 578 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~-----~g~~p~~~~~~~ 578 (631)
.++..++..+...|+++.+...++++...... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34555666666666666666666666665433 566666666666666666666666665543 366666665555
Q ss_pred HHHH
Q 036072 579 FAAD 582 (631)
Q Consensus 579 li~~ 582 (631)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.74 E-value=4 Score=39.89 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC-C-CcCHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYK-F-KAGVDTINCL 320 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g-~-~~~~~~~~~L 320 (631)
..|+.-+..+- .|++..|...|....+..+ ..+..+-=|..++...|+++.|..+|..+.+.- - +--+..+-.|
T Consensus 143 ~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 36887777664 4668888888888888766 355666677888888888888888888777642 1 2234666677
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChh
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLT 349 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~ 349 (631)
.....+.|+.++|..+|+++.++++-+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 77777888888888888888777654443
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.56 E-value=1.9 Score=42.60 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----CCCCcCHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-----YKFKAGVDTINC 319 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~-----~g~~~~~~~~~~ 319 (631)
..++..+++.+...|+++.+...++++....+.+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567888999999999999999999999999999999999999999999999999999998876 588888777666
Q ss_pred HHHH
Q 036072 320 LLEN 323 (631)
Q Consensus 320 Ll~~ 323 (631)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 263
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=2.9 Score=45.07 Aligned_cols=155 Identities=12% Similarity=0.019 Sum_probs=106.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
+.+++.+.++|..++|+++- +|.... .....+.|+++.|.++..+.. +..-|..|.++....
T Consensus 618 t~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 34556666677777776543 222211 122346789999988876643 556789999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 596 (631)
|++..|.+.|....+ |..|+-.+...|+.+....+-....+.| ..|.-..+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHH
Confidence 999999998886654 4556777778888877777777777777 3345556778889999988888
Q ss_pred HHH---HhcC-------CCchHHHHHHHHHhhhhhhhc
Q 036072 597 QKM---RFSG-------KFEVSNVLARWAETTKNRVYR 624 (631)
Q Consensus 597 ~~m---~~~g-------~~~~~~~l~~~~~~~k~~~~~ 624 (631)
.+- ++.. .-.+++++..|.+.+.+-..+
T Consensus 745 i~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k 782 (794)
T KOG0276|consen 745 ISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEK 782 (794)
T ss_pred HhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhh
Confidence 654 2221 226888999999888754443
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.12 E-value=12 Score=34.12 Aligned_cols=135 Identities=14% Similarity=0.198 Sum_probs=89.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 453 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
.++++.+.+.+++|+...|..++..+.+.|++.... .+...++-+|.......+-.+. +....+.++--.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 456666778899999999999999999999865544 4455666777666655553333 2334445544444442
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
-...+..+++.+...|++-+|+.+.+...... ......++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11246677888999999999999998763322 12235677777788877665555554444
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=90.44 E-value=12 Score=39.64 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHH---HCCCCCHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 261 FETMVSMLEEMG---EKGLLSMETFKIAMNAFAA---------AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 261 ~~~A~~l~~~m~---~~g~~~~~~~~~li~~~~~---------~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
.+.|..+|.+.. +..+.....|..+..++.. .....+|.+.-+...+.+ +-|......+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 345666666666 3332223344433333222 123445566666666665 556666666666666667
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
+.+.|...|++...-.+....+|....-...-+|+.++|.+.+++..+.. .+.-.......+..|+.. ..++|+.+|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 77777777777766544455566666666666777777777777755431 111222333334455543 3566666664
Q ss_pred H
Q 036072 408 V 408 (631)
Q Consensus 408 ~ 408 (631)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 3
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.35 E-value=5.9 Score=34.88 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=43.3
Q ss_pred HhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
.+.|++++|.+.|+.+...- -.-....--.|+.+|.+.+++++|...+++.++....--..-|...+.|++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 36677777777777776531 0122344556677777777777777777777765433333445555555543
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.28 E-value=24 Score=36.30 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP---DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 502 ~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
...++..+.+.+.+.|.++.|...+..+...+... +....-.....+...|+.++|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777766543111 233333344555666777777777766655
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.16 E-value=7.1 Score=38.18 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGF--KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCP-DDNSYTVLI 545 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~li 545 (631)
.|+..+..| +.|++..|.+.|...++..- .-....+..|..++...|+++.|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555544 55556666666666665310 112233445666666666666666666666543 1111 123444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666666554
No 269
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=37 Score=38.03 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036072 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577 (631)
Q Consensus 498 g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 577 (631)
|......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-.++-+.+.. +.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 333444556666777788899999999877765 36889999999999999999988877766542 33466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036072 578 KFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 578 ~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
-++.+|.+.|+.++|.+++-+..
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccC
Confidence 78999999999999999998775
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=7.5 Score=39.02 Aligned_cols=154 Identities=6% Similarity=-0.118 Sum_probs=105.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHcCCChHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~---g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
--.|.+.+|-..++++.+..+.+.-.+...=.+|.-.|+...-...++.+.-. +++....+...+.-++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34577888888888888877767667777778888888888888888877654 222223333334445567899999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
|++.-++..+-.+.|.-.-.++...+--.++..++.++..+-.+. +--.-..-|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 998888877666667777788888888889999988877654321 10001112333344556678899999998653
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.75 E-value=16 Score=33.34 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH-HHHHH-
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS--METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD-TINCL- 320 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~-~~~~L- 320 (631)
...|...++ +++.+..++|+.-|.++.+.|.-+ .-..-.+.......|+...|+..|+++-...-.|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 456677888888888888877632 2233344455666788888888888876654333322 11111
Q ss_pred -HHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 321 -LENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 321 -l~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.-.+...|.++....-.+-+.. +.+.-...-.+|.-+-.+.|++.+|.+.|..+.+.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1234556777766666665542 33333344455666666777777777777766653
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.55 E-value=16 Score=33.24 Aligned_cols=113 Identities=13% Similarity=0.244 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 488 ~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.++++.+.+.++.|+...|..+++.+.+.|.+... ..+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 45566677789999999999999999999987654 44555666677766665553332 3334455554455433
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 568 -GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 568 -g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
+ ..+..++..+...|++-+|.++.++...........++
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fL 127 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFL 127 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHH
Confidence 2 14667888999999999999999886444433333333
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.25 E-value=1.2 Score=30.37 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~l 285 (631)
+|..+...|.+.|++++|.++|++..+..+-+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 445555666666666666666666666555555544433
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.14 E-value=32 Score=36.72 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
.+...+-+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34445556677777777777766532 111233555666777777777777777666543
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.56 E-value=15 Score=37.42 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=56.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHH---
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGF-----KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR----RGCCPDDNSY--- 541 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~--- 541 (631)
+-.+....+.++++++.|+...+... ......|..|-..|....++++|.-+..+..+ .++.--..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444455556666666655543211 11223455566666666666666555444332 1221111112
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 542 --TVLIGGLISQDRSGEAYKYLEEMLE----KGMKAP-VLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 542 --~~li~~~~~~g~~~~A~~ll~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
-.|..++...|..-+|.+..++..+ .|-.+. ......+.+.|...|+.|.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2233345555666556555555433 231111 1223455555666666666554444
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.28 E-value=33 Score=35.24 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
+|..++..+.+.|.++.|...+..+...+... +....-.-+..+-..|+.++|+..++...+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555666666666666666655432111 122222233444455555666666655554
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.07 E-value=21 Score=32.81 Aligned_cols=203 Identities=17% Similarity=0.117 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 348 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
...+......+...+++..+...+...... ........+..+...+...++...+.+.+.........+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 131 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA------- 131 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH-------
Confidence 445555566666666666666666555542 122334445555555555666666666666655433222100
Q ss_pred HHhhcCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036072 427 KFCKQNAAVYTCLIT-GFGNRRRMDIVYDLLKEMEERGC--PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503 (631)
Q Consensus 427 ~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 503 (631)
...... .+...|+++.|...+........ ......+......+...++.+.+...+....+.......
T Consensus 132 ---------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 202 (291)
T COG0457 132 ---------EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA 202 (291)
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch
Confidence 000111 45556667777776666643211 012233333333355666777777777776664211134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
..+..+...+...++++.|...+......... ....+..+...+...+..+++...+.+....
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666677777777777766654221 1333333334444555666666666666554
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.02 E-value=1.2 Score=30.26 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=7.6
Q ss_pred HHHHcCCChHHHHHHHHHHh
Q 036072 322 ENLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~ 341 (631)
..|...|++++|+++|+++.
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.94 E-value=16 Score=37.13 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP---DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p---~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li 425 (631)
.|-.+.+++-+.-++.+++.+-..-... |..| ......++-.++...+.++++++.|+...+-....+....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L---- 160 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML---- 160 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee----
Confidence 3444445555555555555544443322 2222 1123334556666667778888877776543211111000
Q ss_pred HHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHH
Q 036072 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE----RGCPPDGLTYNA-----LIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~-----li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
.-.++-.|-..|.+..|+++|.-+..+..+ -++.--..-|.. |.-++...|.+-.|.+..++..+
T Consensus 161 ------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 161 ------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred ------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 123455566677777777777665554332 233322223333 23356677887777777776554
Q ss_pred ----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 497 ----SGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 497 ----~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
.|-.+. ......+.+.|...|+.+.|+.-|+...
T Consensus 235 lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 235 LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 342221 2334566777888899888887777543
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.70 E-value=6.2 Score=36.48 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDV----VAH 386 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~ty 386 (631)
+..+.+.|++.|+.+.|.+.|.++.+... .-...+-.+|......+++..+...+.+.... |...+. ..|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 34445555555555555555555543211 11234445555555556665555555544432 111111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..+ .+...+++..|-+.|-+..
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccC
Confidence 222 2234678888888886654
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.64 E-value=7.2 Score=38.81 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=72.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS---GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538 (631)
Q Consensus 462 ~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (631)
.|......+...++..-....+++.+..++-++... -..|+...+ +.++. +-.-+.++++.++..=+..|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 455556666677776666677888888887777643 112222211 22222 2234667888888888888999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.+++.+|+.+.+.+++.+|..+...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999988888888777654
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.47 E-value=2.8 Score=34.28 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
+..+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+..+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 44555556666666777777777777777777777777777777665444444565555
No 283
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.47 E-value=2.8 Score=33.91 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
++.+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+...+..+|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34444445555555566666666666666666666666666655544333333444443
No 284
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.42 E-value=9.8 Score=35.58 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 262 ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 262 ~~A~~l~~~m~~~g~~-~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~---g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
+.|...|-.+...+.+ +++....|...|. ..+.+++++++....+. +-.+|+..+..|+..|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4566666666666664 4444444444443 56677777776666553 2245666666666666666666655
No 285
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.36 E-value=15 Score=31.76 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHHcC
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDD---NSYTVLIGGLISQD 552 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~li~~~~~~g 552 (631)
+.+..|+++.|++.|.+.+..- +-....||.=..++.-.|+.++|.+=+++..+. |-+ .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3445556666666665555431 234455555555555566666665555555542 221 11 11222222234455
Q ss_pred CHHHHHHHHHHHHHCC
Q 036072 553 RSGEAYKYLEEMLEKG 568 (631)
Q Consensus 553 ~~~~A~~ll~~m~~~g 568 (631)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555555554
No 286
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.10 E-value=17 Score=31.48 Aligned_cols=90 Identities=17% Similarity=-0.004 Sum_probs=54.3
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHHHcCC
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVA---HNIMLEGLLKIGK 398 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t---y~~li~~~~~~g~ 398 (631)
++...|+.+.|++.|.+...-.+.....||.-..++--.|+.++|++=+++..+. |-+ +... |..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 3455667777777777665555556667777777777777777777766666654 222 2222 2222234555677
Q ss_pred HHHHHHHHHHHHHcC
Q 036072 399 RSDAIKLFEVMKAKG 413 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g 413 (631)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777776666555
No 287
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.08 E-value=34 Score=34.00 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 448 RMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQK--MPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 448 ~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g--~~~~A~~l~~~m~~-~g~~p~~~t~~~Li~~~~~~g~~~~A~ 523 (631)
.+.+|+++|+.... ..+--|..+...+++...... ....-.++.+-+.. .+-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555555553221 224446666666666655422 12222223333332 235677788888888888888888888
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHH
Q 036072 524 KVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEE-----MLEKGMKAPVLDYNKFAAD 582 (631)
Q Consensus 524 ~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~-----m~~~g~~p~~~~~~~li~~ 582 (631)
++|+..... +..-|...|..+|+.....|+..-..++.++ +.+.|+..+...-..+-..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 888877764 5566888888888888888888766666553 2334555555444444333
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.86 E-value=9.1 Score=35.37 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH----HH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR---GCCPDD----NS 540 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t 540 (631)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.... |-.++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666777777777777777777776543333 344566677777777777777766655432 211111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
|..|. +...+++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 234678887777776554
No 289
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.11 E-value=26 Score=34.75 Aligned_cols=135 Identities=5% Similarity=0.077 Sum_probs=90.1
Q ss_pred cCChhHHHHHHHHHHHC-CC-CCHHHHHHHHHHHHH-ccC-HHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 258 ARQFETMVSMLEEMGEK-GL-LSMETFKIAMNAFAA-AKE-RKKAVAIFELMNK-YKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~-g~-~~~~~~~~li~~~~~-~g~-~~~A~~v~~~m~~-~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
+..+.+|+.+|+..... .+ .+.++...+++.... .+. ...--++.+-+.. .+-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 34466777777744332 23 477788888888776 222 2222334444433 3457888888899999999999999
Q ss_pred HHHHHHHHhcc--cCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHH
Q 036072 333 AQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE-----MIDKGFKPDVVAHNIMLEG 392 (631)
Q Consensus 333 A~~l~~~m~~~--~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~ty~~li~~ 392 (631)
-.++++..... ..-|...|..+|..-.+.|+..-+.++.++ ++..|+..+...-..+-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99988886543 556788899999999999998877776654 3344555555554444433
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.70 E-value=68 Score=36.17 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=109.7
Q ss_pred HHHHHHHhhcCCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHCC----CCC--HHHHHHHHHHHHHccCHHHH
Q 036072 228 AFRFFCWAGDKPGFAHN--SRTYNSMMSILG-RARQFETMVSMLEEMGEKG----LLS--METFKIAMNAFAAAKERKKA 298 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~--~~~y~~li~~~~-~~g~~~~A~~l~~~m~~~g----~~~--~~~~~~li~~~~~~g~~~~A 298 (631)
|++-++.+.++....|. ..++-.+...|. ...+++.|+..+++..... ..+ -.....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 66666666555555553 445666777776 5688999999998764322 122 224445667777776666 8
Q ss_pred HHHHHHHHhCC----CCcCHHHHHHH-HHHHHcCCChHHHHHHHHHHhcc----cCCChhhHHHHHHHHH--hcCCHHHH
Q 036072 299 VAIFELMNKYK----FKAGVDTINCL-LENLGRSKLPKEAQLLFDKLKHR----FTPNLTTYTVLLGGWC--RVKNLMEA 367 (631)
Q Consensus 299 ~~v~~~m~~~g----~~~~~~~~~~L-l~~~~~~g~~~~A~~l~~~m~~~----~~p~~~~y~~Li~~~~--~~g~~~~A 367 (631)
....+..++.- ..+-...|..+ +..+...++...|.+.++.+... ..+-..++-.++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88888776542 11222333333 33333447999999999887542 3344445555555544 34556777
Q ss_pred HHHHHHHHHcCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 036072 368 GRVWNEMIDKGF---------KPDVVAHNIMLEGLL--KIGKRSDAIKLFEVMK 410 (631)
Q Consensus 368 ~~l~~~m~~~g~---------~p~~~ty~~li~~~~--~~g~~~~A~~ll~~m~ 410 (631)
.+.++.+..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777743221 345667777777665 4677767776666554
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.37 E-value=70 Score=36.05 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhCC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-------RKKAVAIFELMNKYK 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-------~~~A~~v~~~m~~~g 309 (631)
..+|. +|=.|.|+|++++|.++..+....-......|...+..|....+ .++...-|+...+..
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34453 66678899999999999966655444444567777777776532 235555566665543
No 292
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.33 E-value=76 Score=36.39 Aligned_cols=35 Identities=9% Similarity=-0.046 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
...+...++-....-..-+...+|.++..|++..+
T Consensus 609 ~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 609 ENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 34444544444433223477788888877776443
No 293
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.93 E-value=31 Score=31.64 Aligned_cols=228 Identities=18% Similarity=0.090 Sum_probs=155.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFK-PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l 439 (631)
.+....+...+......... .....+......+...+++..+...+.........+. ....+..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 101 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN--------------LAEALLNL 101 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc--------------hHHHHHHH
Confidence 45556666666666654322 1356777888888899999999998887765301111 22334445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHc
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF--KPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~Li~~~~~~ 516 (631)
...+...+.+..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 102 GLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180 (291)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence 556666677899999999888754443 222222333 78899999999999999866321 12344455555557788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 596 (631)
++.+.+...+..............+..+...+...++.+.|...+......... ....+..+...+...|..+.+...+
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 999999999999987532214677888888889999999999999999876322 2445556666666777789998888
Q ss_pred HHHHhcCC
Q 036072 597 QKMRFSGK 604 (631)
Q Consensus 597 ~~m~~~g~ 604 (631)
.+......
T Consensus 260 ~~~~~~~~ 267 (291)
T COG0457 260 EKALELDP 267 (291)
T ss_pred HHHHHhCc
Confidence 87765543
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.61 E-value=30 Score=31.16 Aligned_cols=53 Identities=17% Similarity=-0.024 Sum_probs=26.4
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+.++.+.++.++..+.---+-....-..-...+...|+|.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34456666666666654321111111111223345666677777777666554
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.81 E-value=77 Score=35.23 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=76.7
Q ss_pred HHhcCChhHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 255 LGRARQFETMVSMLEEMGE-------KGLLSMETFKIAMNAFAAAK-----ERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~-------~g~~~~~~~~~li~~~~~~g-----~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
++..++++.|...|+.+.+ .| .+....-+..+|.+.. +.+.|..++...-+.| .|+...+-..+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4456677777777777765 33 2223444555555432 5566777777777766 344444333333
Q ss_pred HHHc-CCChHHHHHHHHHHhcccCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 323 NLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC--RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 323 ~~~~-~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
.... ..+...|.++|...-....+....+.+++.... -..+...|..++....+.| .|-..--...+..+.. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 3322 245567777777655432222222222221111 2236667777777777665 2221111222222333 555
Q ss_pred HHHHHHHHHHHHcC
Q 036072 400 SDAIKLFEVMKAKG 413 (631)
Q Consensus 400 ~~A~~ll~~m~~~g 413 (631)
+.+.-.+..+.+.|
T Consensus 414 ~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 414 DTALALYLYLAELG 427 (552)
T ss_pred cHHHHHHHHHHHhh
Confidence 55555555555544
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.04 E-value=2.8 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555544
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.82 E-value=2.9 Score=27.00 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
+|+.|...|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
No 298
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.83 E-value=8 Score=36.49 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTINCLLEN 323 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~~Ll~~ 323 (631)
|.+..++.+.+.++..+|+...++-.+..+.+...-..+++.++-.|++++|..-++..-+.. ..+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345667778888888888888888887777777788888888888888888887777666542 23445566666654
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.51 E-value=5.3 Score=39.68 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH
Q 036072 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~ 316 (631)
|...+..+...++.......+++++..++-+++..-- ....+-.+.++.+. .-+.++++.++..-++.|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 5555666677777777777788888888777764322 11112223333332 3356788888888888999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
++.+|+.+.+.+++.+|..+.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999888887777654
No 300
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.13 E-value=17 Score=33.98 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPT-----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 551 (631)
-+.++|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..+.++.+.. ......--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3667888888888888888752 221 233444455667788888888777777765322 122222223467777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 036072 552 DRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g 568 (631)
..+++|++=|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888753
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.64 E-value=65 Score=31.57 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPD-----------GLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
.|...|...+.+.+..++++++.+..-.-| ...|..=|+.|....+-.+...+|++...
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 345556666666666666666655421111 12455556666666666666666665543
No 302
>PRK09687 putative lyase; Provisional
Probab=78.48 E-value=76 Score=31.74 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=59.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK-MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
..+.++++.++. ++...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 344445555543 344444443332 34444445555554442 12344444444443 23445555555666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
|+. .|...+-...+.+ + .....+.++...|.. +|+..+.++.+. .+|..+-...+.+|
T Consensus 220 ~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 KDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 653 3444444444332 1 123455555555554 466666665543 22444444444433
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.22 E-value=27 Score=32.70 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=44.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR---GCCPDDNSYTVLIGGLISQDRS 554 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~ 554 (631)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444455 566666666666554445555545444444 44566666666655542 2245666666666666666666
Q ss_pred HHHH
Q 036072 555 GEAY 558 (631)
Q Consensus 555 ~~A~ 558 (631)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6553
No 304
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.95 E-value=87 Score=32.13 Aligned_cols=237 Identities=13% Similarity=0.099 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC----HHHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTI 317 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~----~~~~ 317 (631)
.|++.+.-.++.-|....+-+....+-... ....+.+-.++.+.+.....+.+.......- .+. ....
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f-------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~-~~~~~qlT~~H 143 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIF-------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKM-QPSNGQLTSIH 143 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHH-------HHHHHHHHHHHHhcCCccccchHHHHHHHHh-ccCccchhhhH
Confidence 467777777777776665533222111111 1234555566665555554444443333221 111 1223
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHh-cc------cCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLK-HR------FTPNLTTYTVLL--GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~-~~------~~p~~~~y~~Li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
..++..+.+.+++.-+...++.-. +. .+|.......+= -.|...++++.|+.+|....-. |....-..
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~ 220 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHI 220 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHH
Confidence 345666666676666655554321 11 222211111110 1123457899999998887742 33222223
Q ss_pred HHHHH--------HHcCCH--------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHH----HhccCC
Q 036072 389 MLEGL--------LKIGKR--------SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG----FGNRRR 448 (631)
Q Consensus 389 li~~~--------~~~g~~--------~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~----~~~~g~ 448 (631)
.+.+| .-.|++ ..|...+ +|-...|..+...|.+.......+++.. +.+.+.
T Consensus 221 hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~--------K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnn 292 (422)
T KOG2582|consen 221 HLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFF--------KPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNN 292 (422)
T ss_pred HHHHHHHHHHHHhhhcCceeeccccchhhhHHhc--------ccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCc
Confidence 33333 234543 2222222 2333346666666666544444555443 334455
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHHC
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNAL----IKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~l----i~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
..-|...+..|..+.+.--..||.+| |.-..+.+..++|.+..-+|.+.
T Consensus 293 t~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 293 TGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 55555555555554443333444443 11222344445555555555544
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.94 E-value=18 Score=29.48 Aligned_cols=43 Identities=5% Similarity=0.204 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 488 ~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444444444445555555555555555555544443
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.84 E-value=53 Score=34.81 Aligned_cols=123 Identities=8% Similarity=0.009 Sum_probs=76.5
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH
Q 036072 286 MNAFAAAKERKKA-VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364 (631)
Q Consensus 286 i~~~~~~g~~~~A-~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~ 364 (631)
|.--...|+...| .+++..+....-.|+.....+. .....|+++.+...+......+.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 3334455666555 4556666555445554444333 345678888888888777665555667778888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 365 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
++|..+-..|....++ +...........-..|-++++...++.+..
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 8888888888776554 222222222223344667777777777654
No 307
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.82 E-value=1.1e+02 Score=34.06 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 453 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
...++.+..+-.-.+...-.-++..|.+.|-.+.|.++++.+-..-+ ...-|..-+..+.++|+...+..+.+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444443334566677788888888888888888877655422 223455666667777777766666555553
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.28 E-value=33 Score=28.26 Aligned_cols=47 Identities=6% Similarity=0.211 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555666777777777777777777777777777766654
No 309
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.99 E-value=1.5e+02 Score=34.49 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-HH-HH-HHHH--HHHHHccCHHHHHHHHHHHHh
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-ME-TF-KIAM--NAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~-~~-~~li--~~~~~~g~~~~A~~v~~~m~~ 307 (631)
+..-+..+....++++|..+-+.....++-. .. .+ ..+. --+..++++++|++.|..+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 7777888888888888888776665443311 11 11 1111 124556777777777777754
No 310
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.65 E-value=46 Score=29.49 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 537 DDNSYTVLIGGLISQDR-SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 537 ~~~t~~~li~~~~~~g~-~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+..+|++++.+..+..- ---+..+|+-|.+.+..++...|..++.++.+.-.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 45567777777655444 33456666666666667777777777777665533
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.40 E-value=56 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 036072 358 WCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~ 377 (631)
+...|+|++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 33445555555555555443
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.80 E-value=1.2e+02 Score=32.66 Aligned_cols=165 Identities=12% Similarity=0.101 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
+....-+++..++.+-...-++-+..+|.+-| -+...|..+++.|..+ ..++-..+|+++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445566777777778888888888888754 3667888889988888 558888899988887542 3333344444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCC-----PDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-KGMKAPVLDYNKFAADLSR 585 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~-~g~~p~~~~~~~li~~~~~ 585 (631)
-|-+ ++...+..+|.++...=+. .-...|..|+... ..+.+..+.+..++.. .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 7888888888877754221 0123455554321 3566677777766654 3544455566777777888
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 036072 586 AGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 586 ~g~~~~A~~l~~~m~~~g 603 (631)
..++++|++++..+.+..
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 888999988888665433
No 313
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.60 E-value=69 Score=37.23 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCcHHHHHH
Q 036072 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKG---FKPDVVAHNIMLEGLLKIGKR--SDAIKLFEVMKAKGPSPNVRSYTI 423 (631)
Q Consensus 349 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~--~~A~~ll~~m~~~g~~p~~~~~~~ 423 (631)
.-|..|+..|...|+.++|+++|.+..+.- -.--...+..++..+.+.+.. +-++++-....+.........++.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 348888999999999999999999888731 111122233455555555544 555555554444322211112211
Q ss_pred HHH-HHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036072 424 MIW-KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 424 li~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 480 (631)
.-. .....+ ...+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 585 ~~~~~~~sis----~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESIS----RDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCC----HHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 000 000000 01233455556777788888888766556677777777777654
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.55 E-value=3.3 Score=26.45 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=12.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHH
Q 036072 345 TPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 345 ~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
|-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555543
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.29 E-value=7.9 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
+++.|..+|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555555443
No 316
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.13 E-value=1.6e+02 Score=33.36 Aligned_cols=79 Identities=11% Similarity=-0.062 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
.-...+..+.+.+++...+..+.. .+.+...-.....+....|+.++|......+=-........++.++..+.+
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Confidence 334445555556666655542211 133444444455566666766656555444422122234455666665555
Q ss_pred cCCH
Q 036072 361 VKNL 364 (631)
Q Consensus 361 ~g~~ 364 (631)
.|.+
T Consensus 176 ~g~l 179 (644)
T PRK11619 176 SGKQ 179 (644)
T ss_pred cCCC
Confidence 5543
No 317
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.59 E-value=50 Score=29.29 Aligned_cols=89 Identities=18% Similarity=0.380 Sum_probs=59.0
Q ss_pred CCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhCC
Q 036072 239 PGFAHNSR--TYNSMMSILGRARQFETMVSMLEEMGEK------GLLSMETFKIAMNAFAAAKE-RKKAVAIFELMNKYK 309 (631)
Q Consensus 239 ~g~~p~~~--~y~~li~~~~~~g~~~~A~~l~~~m~~~------g~~~~~~~~~li~~~~~~g~-~~~A~~v~~~m~~~g 309 (631)
.+..++.. ..|.++.-++..+++...+.+++.+..- |..+...|.+++.+.....- .--+..+|.-|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 34444443 3677777777778888888887777432 22455677777777755555 445567777777777
Q ss_pred CCcCHHHHHHHHHHHHcC
Q 036072 310 FKAGVDTINCLLENLGRS 327 (631)
Q Consensus 310 ~~~~~~~~~~Ll~~~~~~ 327 (631)
.+.+..-|..+|.++.+.
T Consensus 111 ~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 777777777777776554
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.58 E-value=66 Score=28.62 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=21.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHhc
Q 036072 292 AKERKKAVAIFELMNKYKFKAGVDTIN-CLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~~~~~~~-~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
.++.+++..+++.|.-. .|+..-.. .-.-.+...|++++|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555555555555443 12211111 111223445555555555555544
No 319
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=73.38 E-value=4.5 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHH
Q 036072 276 LLSMETFKIAMNAFAAAKERKKA 298 (631)
Q Consensus 276 ~~~~~~~~~li~~~~~~g~~~~A 298 (631)
+-+..+|..+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444444443
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.18 E-value=1.6e+02 Score=32.79 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHccCHHHHHHHHHHHHh
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKIAMNA---FAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~li~~---~~~~g~~~~A~~v~~~m~~ 307 (631)
...|.++++...+.|.........++.. +....+.+.|+..|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 3567777777766665433322222222 3355667777777766655
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.92 E-value=9.1 Score=25.02 Aligned_cols=28 Identities=36% Similarity=0.396 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777766653
No 322
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.75 E-value=77 Score=29.03 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH-TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN-SYTVLIG 546 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~ 546 (631)
..|...++ +++.+..++|+.-|..+.+.|..--.. .-..+.......|+...|...|+++-.....|-.. -..-|=.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444444 245556666666666666655432111 11122233445666666777776665543333222 1111111
Q ss_pred --HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 547 --GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 547 --~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++..|.++|..+-.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2345666666666555554433222222344566666677777777777766654
No 323
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.36 E-value=17 Score=31.10 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 299 ~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
.+.++.+....+.|++.+....++++.+.+|+..|.++|+.++....+....|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334444445555666666666666666666666666666666554443333444433
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.17 E-value=0.81 Score=40.56 Aligned_cols=84 Identities=11% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666677777766554455666677777777766656555555511 11222344555666666
Q ss_pred HHHHHHHHHHH
Q 036072 554 SGEAYKYLEEM 564 (631)
Q Consensus 554 ~~~A~~ll~~m 564 (631)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.95 E-value=3.1e+02 Score=35.59 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----C---CHHH
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK----A---PVLD 575 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~----p---~~~~ 575 (631)
..+|-...+...+.|.++.|....-...+.+ -...+--...-+...|+...|+.++++-.+.... | .+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 4677788888888999999887766666654 2344555566677889999999999988865321 1 1111
Q ss_pred HHHHH---------HHHHhcCC--HHHHHHHHHHHHh------cCCCchHHHHHHHHHhhhhhhh
Q 036072 576 YNKFA---------ADLSRAGR--SYVLDELAQKMRF------SGKFEVSNVLARWAETTKNRVY 623 (631)
Q Consensus 576 ~~~li---------~~~~~~g~--~~~A~~l~~~m~~------~g~~~~~~~l~~~~~~~k~~~~ 623 (631)
-+..+ .-....|+ .+..++.+.+..+ .|.+-+..-+..|.++.+....
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~ 1811 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKM 1811 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccc
Confidence 12111 11223344 2445556665543 3344566666677766655443
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.61 E-value=56 Score=26.90 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~~~ 616 (631)
..+...|++++|..+.+.+ ..||...|-.| +-.+.|..+.+...+-+|..+|...+-.......+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg~p~lq~Faag~re 111 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASGDPRLQTFVAGMRE 111 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455667777777666554 35666655443 23466666666666667777776554444444443
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.71 E-value=2e+02 Score=32.80 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=28.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
|+.+.+.+.+++|+++.+.....-. ....+....|..+...|++++|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 4445555666666665544432211 123455555666666666666555544443
No 328
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.85 E-value=1.3e+02 Score=30.46 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCH----HHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEER----GCPPDGLTYNALIKL-MKIQKMPDEAVRIYKEMVRSGFKPTI----HTY 506 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 506 (631)
+-.....||+-|+.+.|++.+..-.++ |.+.|...+..=+.. |....-+.+-++..+.+.+.|...+. .+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 334455666667777776666554432 555555444333322 22222334445555555555543332 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
..+- |....++.+|-.+|-+..
T Consensus 187 ~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 187 QGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHH--HHHHHhHHHHHHHHHHHc
Confidence 2221 223345555555554443
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.55 E-value=87 Score=28.28 Aligned_cols=51 Identities=8% Similarity=-0.027 Sum_probs=23.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
+.++.+++..++..+.-..+-..+.-..-...+...|++.+|+.+|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345555555555555544443222222223333445555555555555444
No 330
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.99 E-value=14 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666654
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.65 E-value=1.3e+02 Score=29.88 Aligned_cols=87 Identities=9% Similarity=-0.029 Sum_probs=44.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS---- 550 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---- 550 (631)
|++++..+++.+++...-+--+.--+........-|-.|.+.++...+.++-..-....-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666655444333211222334444455566666666666665555543212233335555555543
Q ss_pred -cCCHHHHHHHH
Q 036072 551 -QDRSGEAYKYL 561 (631)
Q Consensus 551 -~g~~~~A~~ll 561 (631)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666555
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.21 E-value=77 Score=34.76 Aligned_cols=133 Identities=14% Similarity=0.028 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+..+.++..+-+.|..++|+++- +|..- -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN-----SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc-----chHHHHHHHHHH
Confidence 446667777777788877777652 22211 1233456788888887776654 456688899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHH
Q 036072 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 438 (631)
.+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|.. +.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-------------------- 726 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-------------------- 726 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch--------------------
Confidence 999999999888877665 566777777788877666666666665532 11
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKE 458 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~ 458 (631)
...+|...|+++++.+++..
T Consensus 727 AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 12334456788888877754
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.87 E-value=2.4e+02 Score=32.69 Aligned_cols=201 Identities=10% Similarity=-0.040 Sum_probs=106.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHc----CCCCCH
Q 036072 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL-ITGFGNRRRMDIVYDLLKEMEER----GCPPDG 468 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~----g~~p~~ 468 (631)
....++++|..++.++...-..|+...-..+. ..|++| .......|+++.|.++-+...+. -..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~--------ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLL--------AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 35688999999998877643333222211111 122222 12334568889998888876653 233455
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHHHcCC--HHHHHHHHHHHHHc---CC---C
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY---NMI--MKSYFQTGN--YEMGRKVWDEMIRR---GC---C 535 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~L--i~~~~~~g~--~~~A~~~~~~m~~~---g~---~ 535 (631)
..+..+..+..-.|++++|..+..+..+..-.-+...| ..+ ...+...|+ ..+.+..|...... .. .
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 67777788888899999999988776653222233322 222 223455663 33333444433322 01 1
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 536 PDDNSYTVLIGGLISQ-DRSGEAYKYLEEMLEKGMKAPVLD--YNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 536 p~~~t~~~li~~~~~~-g~~~~A~~ll~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+-..++..+..++.+. +...+|..-+.--......|-... +..|+......|+.+.|...+.++...
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1234455555555541 122222222222222221221111 236777788889999998888887653
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.65 E-value=1.9e+02 Score=31.35 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=110.9
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
..|.....+++..+..+..+.-.+.+..+|..- ..+...|-.++.+|..+ .-++-..+|+.+.+..+. |++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455666677777777777777777777776542 23566777888888877 556677777777775432 333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHH
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGL 469 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ 469 (631)
. +...++.+.+..+|......- .|... ++- -...|..|+.... .+.+..+.+...+... |..--.+
T Consensus 140 ~-~yEkik~sk~a~~f~Ka~yrf-I~~~q--~~~-------i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~V 206 (711)
T COG1747 140 D-KYEKIKKSKAAEFFGKALYRF-IPRRQ--NAA-------IKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSV 206 (711)
T ss_pred H-HHHHhchhhHHHHHHHHHHHh-cchhh--hhh-------HHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHH
Confidence 3 334477777777777766542 12100 000 0123333333222 3566666666666543 4444455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.+--+-.-|....++.+|++++..+.+.. .-|...-..++.-+.
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 56666667888888888888888888765 335555555555443
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=1.2e+02 Score=29.21 Aligned_cols=155 Identities=11% Similarity=0.116 Sum_probs=69.9
Q ss_pred HhcCChhHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC--CCCcC--HHHHHHHHHHHH
Q 036072 256 GRARQFETMVSMLEEMGEK------GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY--KFKAG--VDTINCLLENLG 325 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~--g~~~~--~~~~~~Ll~~~~ 325 (631)
+-.+.+++|.++|.+.... .-.--..|.-+...+.+.|.-..|-..|-++-.. .+.|. +.....-|..|.
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYT 104 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 3344566666666553221 1112224444555555555544444443333211 11111 122333455566
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 405 (631)
..|++..|-+..-.+-+-+..+..-+..-|..|-..++|=...+.-. .-...+.-+...-...+++.+|+.+
T Consensus 105 ~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s--------sANKC~lKvA~yaa~leqY~~Ai~i 176 (288)
T KOG1586|consen 105 DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS--------SANKCLLKVAQYAAQLEQYSKAIDI 176 (288)
T ss_pred hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555544443333333334444444333332211111110 0111222333344566888999999
Q ss_pred HHHHHHcCCCCcH
Q 036072 406 FEVMKAKGPSPNV 418 (631)
Q Consensus 406 l~~m~~~g~~p~~ 418 (631)
|++.-......+.
T Consensus 177 yeqva~~s~~n~L 189 (288)
T KOG1586|consen 177 YEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHhccchH
Confidence 9988776554433
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.14 E-value=1.8 Score=38.34 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
+|..+.+.+.++....+++.+...+..-+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 46677777888999999999998776677899999999999998888888888721 11223456777777788
Q ss_pred HHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMI 530 (631)
Q Consensus 519 ~~~A~~~~~~m~ 530 (631)
+++|..++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 877777766543
No 337
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.86 E-value=1.5e+02 Score=30.04 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHH-HH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIR----RGCCPDDNSYTVLIGGLI-SQDRSGEAYKYLEEMLEKGMKAPVLD-YN 577 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~li~~~~-~~g~~~~A~~ll~~m~~~g~~p~~~~-~~ 577 (631)
..+-....-||+.|+.+.|.+.+.+..+ .|.+.|+..+.+=+..+. .+.-+.+-++..+.+.+.|..-+... |.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455666778888888888877766554 366666665554443332 23334566666666777765554433 11
Q ss_pred HHHHH-HHhcCCHHHHHHHHHH
Q 036072 578 KFAAD-LSRAGRSYVLDELAQK 598 (631)
Q Consensus 578 ~li~~-~~~~g~~~~A~~l~~~ 598 (631)
..-.. |....++.+|-.+|-+
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLD 206 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 11111 2233456666666544
No 338
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=66.82 E-value=17 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777888888889999999888888764
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.60 E-value=75 Score=31.43 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=63.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ--- 515 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~--- 515 (631)
=|++++..+++.+++...-+.-+.--+......-..|-.|.+.+++..+.++-..-...--.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 38999999999999887666544322223345555566789999999999998887764333344558887777765
Q ss_pred --cCCHHHHHHHH
Q 036072 516 --TGNYEMGRKVW 526 (631)
Q Consensus 516 --~g~~~~A~~~~ 526 (631)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 59999998876
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.54 E-value=41 Score=31.94 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH---hcccCCChhhHHHHHH
Q 036072 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL---KHRFTPNLTTYTVLLG 356 (631)
Q Consensus 283 ~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m---~~~~~p~~~~y~~Li~ 356 (631)
+..+..+.+.+..++++...+.-.+.+ +.+..+-..++..||-.|++++|..-++-. .....+-..+|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344555566666666666665555553 334444455666666666666665544433 2233344445555554
No 341
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.80 E-value=20 Score=22.05 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
|..+...+...|++++|.+.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445555555556666555555544
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.75 E-value=38 Score=27.00 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 264 MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 264 A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
+.++++.+.++|+.+.+....+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 4455666666666665555554444444566666666666665 32 2 2344555555555544433
No 343
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.47 E-value=56 Score=26.11 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
+.++|+.+.++|+- +......+-.+-...|+.+.|.++++.+. .| | .-|..++.++...|.-+.|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhhc
Confidence 34566666666543 33333333332334567777777777776 43 2 256677777777776665543
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.04 E-value=2.2e+02 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 380 ~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..+......++..+ .|+...++.+++.+..
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAAL 202 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34444444444332 5667677666666543
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.68 E-value=1.4e+02 Score=27.93 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=27.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.+.....|.+|+|..+++...+.++ .......-.+.+...|+-++|..-|++.++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344455555555555555444322 11122222344555555555555555555543
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.50 E-value=1.9e+02 Score=29.46 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc---CCHHHHHHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV---KNLMEAGRVWNE 373 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~---g~~~~A~~l~~~ 373 (631)
.-+.++++.++.. +-+.......|..+.+..+.+...+.++++....+-+...|...|...... -.++++..+|.+
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3344455544442 334444444555555555555555555555544444455555555444331 134444444433
Q ss_pred HHHc------CC----CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036072 374 MIDK------GF----KPD-------VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414 (631)
Q Consensus 374 m~~~------g~----~p~-------~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~ 414 (631)
.... |. .+- ...+.-+...+..+|..+.|..+++.+.+-++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3211 11 011 12233344455678999999999999988654
No 347
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=61.31 E-value=24 Score=21.71 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
..+..+..+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667778888889999998888888764
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.48 E-value=1.6e+02 Score=27.68 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH----
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYN--MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV---- 543 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---- 543 (631)
.|..++.... .+.. +.....+++....-+-...++. .+...+..+|++++|..-++..... |....+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444444332 3333 4444455555432122222232 2345567788888888888876643 12222332
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 544 -LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 544 -li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
|.+.....|.+++|+++++...+.++.+ .....-.+++...|+.++|..-|++-.+++.
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 4456678899999999998887765432 2345567888999999999999999888763
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.22 E-value=1.6e+02 Score=27.75 Aligned_cols=90 Identities=10% Similarity=0.104 Sum_probs=62.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDG----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQ 515 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~ 515 (631)
+-+.++|++++|..-|.+..+....... +.|..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 4577889999999988888776332222 334444557788888888888888887764 32 2233333457778
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 516 TGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~ 532 (631)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888876
No 350
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=59.05 E-value=27 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=1.8e+02 Score=28.86 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
.-++..+.+.|.+.+|..+.+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4567777788888887766543
No 352
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.96 E-value=68 Score=33.46 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 263 TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 263 ~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
+|..+++......+-+...--.++..|...|....|.+.|..+.
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 34444444444444444444445555555555555555554443
No 353
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=58.88 E-value=3.1e+02 Score=30.91 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhccCchh-HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH
Q 036072 211 HNLVVDVLERFRHARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM 279 (631)
Q Consensus 211 ~~~~~~vl~~~~~~~~~-A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 279 (631)
...+..+++.++..... ..+++..+.... .....++.+++++...|-...+.-+.+.+....+.+.
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~---~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ 412 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS---KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDD 412 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS------HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHH
Confidence 34577777777766533 556666554332 3467899999999999977766555555555333333
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.81 E-value=1e+02 Score=25.41 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
.+.+.|++++|..+.+.+ +.||...|.+|-. .+.|..+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344556666666555444 3456555555433 24555555555555555554
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.74 E-value=61 Score=27.12 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.57 E-value=3.1e+02 Score=30.89 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=96.0
Q ss_pred HHHHHHHHH-hCCCCcCHH--HHHHHHHHHH-cCCChHHHHHHHHHHhcccC-CCh-----hhHHHHHHHHHhcCCHHHH
Q 036072 298 AVAIFELMN-KYKFKAGVD--TINCLLENLG-RSKLPKEAQLLFDKLKHRFT-PNL-----TTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 298 A~~v~~~m~-~~g~~~~~~--~~~~Ll~~~~-~~g~~~~A~~l~~~m~~~~~-p~~-----~~y~~Li~~~~~~g~~~~A 367 (631)
|++.++.+. +..+.|..+ ++-.+...+. ...+.+.|+..+++...... ++. .....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555555 333344333 3334455544 56778888888886532211 111 12335566666666665 8
Q ss_pred HHHHHHHHHc----CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 368 GRVWNEMIDK----GFKPDVVAHNIM-LEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 368 ~~l~~~m~~~----g~~p~~~ty~~l-i~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
...+++..+. +..+-...|..+ +..+...++...|.+.++.+...-. .-|..++..+ .....++.
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~---------~l~~~~l~ 189 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA---------SLSEALLH 189 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH---------HHHHHHHH
Confidence 8777776653 222334444444 3333344788888888887765421 2232222211 01112222
Q ss_pred HHhccCCHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERG---------CPPDGLTYNALIKLM--KIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g---------~~p~~~t~~~li~~~--~~~g~~~~A~~l~~~m~ 495 (631)
.+.+..+++.+.+..+.... ..|...+|..+++.+ ...|++..+...++++.
T Consensus 190 --l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 190 --LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred --hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23455666666666653321 234556777777654 45566666666555443
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.55 E-value=30 Score=27.00 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIRRGCCPD--DNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~ 559 (631)
.++.++|+..|+...++-..+. ..++..|+.+|+..|+++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444322111 1233344444444444444443
No 358
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=58.46 E-value=1.7e+02 Score=27.91 Aligned_cols=180 Identities=12% Similarity=0.037 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
|-+.-|.-=|.+...-.+.-+.+||-|.-.+...|+++.|.+.|+...+....-+-...|--|. +.-.|++.-|.+=+-
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 4444444444444333344456788888888888888888888888887533222222222222 223477777766555
Q ss_pred HHHHcC-CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036072 408 VMKAKG-PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK-EMEERGCPPDGLTYNALIKLMKIQKMPD 485 (631)
Q Consensus 408 ~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~ 485 (631)
..-+.. -+|=-..|-.++ -+.-++.+|..-+. +... .|..-|...|-.|.- |++.
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~------------------E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS 214 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN------------------EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS 214 (297)
T ss_pred HHHhcCCCChHHHHHHHHH------------------HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc
Confidence 444432 122111121111 01124445544332 2222 244455554444322 2211
Q ss_pred HHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 486 EAVRIYKEMVRSGFK------PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~------p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
...+++.+....-. .=..||-.|.+-|...|+.++|..+|+-.+..
T Consensus 215 -~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 215 -EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11223333221100 01356677777777788888888888776654
No 359
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.97 E-value=1.5e+02 Score=32.21 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (631)
+...+...|+.++.+.+..+.+......+.|+.+++.+..-.+ ...++..+.. ++ |..
T Consensus 189 L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~---~~it~~~V~~-------------~l------g~~ 246 (484)
T PRK14956 189 SEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD---SKLTGVKIRK-------------MI------GYH 246 (484)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC---CCcCHHHHHH-------------Hh------CCC
Confidence 3444455567777777766666655555556666654311000 0112221111 11 555
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
+.+.+..++.++...+....|+.+++.+.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 66667777777666666678888888888888665544
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.90 E-value=53 Score=32.65 Aligned_cols=98 Identities=9% Similarity=0.084 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 240 GFAHNSRTYNSMMSILG----RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
....+...+.-++..|- ....+..|...=+.+.. .-..+++.....|..+|.+.+|.++.+...... +.+..
T Consensus 239 ~inltide~kelv~~ykgdyl~e~~y~Waedererle~---ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~ 314 (361)
T COG3947 239 AINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQ---LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQ 314 (361)
T ss_pred ccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhH
Confidence 33455666777776662 22233323222222211 123356777788889999999999998888876 67778
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHh
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~ 341 (631)
.+-.|+..+...|+--.|.+.++.+.
T Consensus 315 ~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 315 DNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHH
Confidence 88888899999998888877777764
No 361
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.37 E-value=30 Score=21.36 Aligned_cols=27 Identities=30% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666777777776666654
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.87 E-value=23 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 389 MLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 389 li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.51 E-value=3.7e+02 Score=31.18 Aligned_cols=229 Identities=12% Similarity=0.031 Sum_probs=121.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 036072 359 CRVKNLMEAGRVWNEMIDKGFKPDV-------VAHNIMLE-GLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~-~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 430 (631)
....++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... ...+.. +.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~-~~-------- 495 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAY-RS-------- 495 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccc-hh--------
Confidence 3568899999999888764222221 12333322 223468899999999888764 111111 11
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HHHhcCCh--hHHHHHHHHHHHC--CCC-
Q 036072 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTY---NALIK--LMKIQKMP--DEAVRIYKEMVRS--GFK- 500 (631)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~--~~~~~g~~--~~A~~l~~~m~~~--g~~- 500 (631)
....+.++..+..-.|++++|..+.....+.--.-+...| ..+.. .+...|+. ++.+..|...... +-+
T Consensus 496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2334555667777789999999988776654222233333 33322 24455632 2333333333321 001
Q ss_pred ---CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCC----C
Q 036072 501 ---PTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSY--TVLIGGLISQDRSGEAYKYLEEMLEKGM----K 570 (631)
Q Consensus 501 ---p~~~t~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~ll~~m~~~g~----~ 570 (631)
+-..++..+..++.+.. ...++..-+.--......|-...+ ..|+......|+.++|...+.++..... .
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 22344555555555521 222222222222222222222222 3677778889999999999999876432 2
Q ss_pred CCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 036072 571 APVLDYNKFAAD--LSRAGRSYVLDELAQK 598 (631)
Q Consensus 571 p~~~~~~~li~~--~~~~g~~~~A~~l~~~ 598 (631)
++...-...+.. ....|+.+.+..+..+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 333332233333 3467888887777665
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.09 E-value=25 Score=24.03 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=10.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444445555555555544443
No 365
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.03 E-value=24 Score=21.48 Aligned_cols=23 Identities=17% Similarity=0.694 Sum_probs=11.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444445555555555555444
No 366
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.70 E-value=3.3e+02 Score=31.49 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHH
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~ 234 (631)
++.++.+.|+.++.+.+..+.+....+-+.|+.+++.
T Consensus 187 L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 187 LERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444555677777777777776665555556666543
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.01 E-value=18 Score=21.31 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 036072 578 KFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 578 ~li~~~~~~g~~~~A~~l~~ 597 (631)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666555543
No 368
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=52.83 E-value=20 Score=21.83 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=4.8
Q ss_pred cCCHHHHHHHHHH
Q 036072 361 VKNLMEAGRVWNE 373 (631)
Q Consensus 361 ~g~~~~A~~l~~~ 373 (631)
.|++++|.+.|++
T Consensus 13 ~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 13 LGDYDEAIEYFQR 25 (33)
T ss_dssp HCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 3333333333333
No 369
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=52.03 E-value=1.2e+02 Score=25.19 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCC
Q 036072 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD--RSGEAYKYLEEMLEKG 568 (631)
Q Consensus 506 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~ll~~m~~~g 568 (631)
...++.-|...+++++|..-+.++..... .......+|..+...+ .-+.+..++..+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 34566777778888888887777653321 2233334444444332 2344555566666555
No 370
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.20 E-value=2.4e+02 Score=27.36 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-IGKRSDAIKLFEVMKA 411 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~ll~~m~~ 411 (631)
-++..+-++++++++...++++...+...+..-.|.+-.+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3566677778888888888888887777776666666665533 3444555555555543
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.08 E-value=73 Score=33.76 Aligned_cols=213 Identities=12% Similarity=0.084 Sum_probs=106.4
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLT--TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV--AHNIMLEGLLKIG 397 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~~--~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g 397 (631)
...+..|+.+.+..+++. +..++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 7 ~~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 7 CDAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 334567787776666642 3334332 2334555666777765 445555667665533 1234455666778
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT--YNALI 475 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li 475 (631)
+.+.+..+++ .|...+... +..- .+.+...+..|+.+ +++.+.+.|..|+... -.+.+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~-----------~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpL 139 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVF-----------YKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPL 139 (413)
T ss_pred CHHHHHHHHH----cCCcccccc-----------cCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHH
Confidence 8776555443 333221110 0001 12334444556654 4455556676654321 12234
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHH
Q 036072 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTI---HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY---TVLIGGLI 549 (631)
Q Consensus 476 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~li~~~~ 549 (631)
...+..|+.+-+..+ .+.|..++. .-.+.| ...+..|+.+ +.+.+.+.|..++...- .+++...+
T Consensus 140 h~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~ 210 (413)
T PHA02875 140 HLAVMMGDIKGIELL----IDHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAI 210 (413)
T ss_pred HHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHH
Confidence 444567776554444 444544332 222233 3345566654 44556666766654321 23444344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVL 574 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~ 574 (631)
..|+.+ +.+-+.+.|..++..
T Consensus 211 ~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 211 ENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred HcCCHH----HHHHHHHCCcCcchH
Confidence 556553 455666788777754
No 372
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=49.91 E-value=1.7e+02 Score=33.85 Aligned_cols=224 Identities=16% Similarity=0.181 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 382 ~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
.......++.++...|+++-|.+++..-... ..+.......++.++-. .|+.--++--..|.+..|.++++-+..
T Consensus 431 ~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~-~l~~~~~~~lvl~~~~e----~fd~Asn~n~~~g~lk~A~~~L~l~~~ 505 (715)
T PF08314_consen 431 KDEIEEIFLEALLSSGRFSLAKSLYEESSSS-PLSSEKVEDLVLKAAWE----FFDNASNGNRTRGGLKKARECLNLFPP 505 (715)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT----TT-HHHHHHHHHHHHH----HHHH-SS--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHH----HHhcCCCCCCCChHHHHHHHHHHhccC
Confidence 4566778889999999999999988864322 13334444444433221 233333333445678888888877765
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------HHHHHHHH-HcC----CHHHHHHHHHHH
Q 036072 462 R-GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY------NMIMKSYF-QTG----NYEMGRKVWDEM 529 (631)
Q Consensus 462 ~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------~~Li~~~~-~~g----~~~~A~~~~~~m 529 (631)
. .-.+...-...||.+.....++.-. .+.|++..+.-. -.||.-+. .+. +.++-.++.+.|
T Consensus 506 ~~~~~~~~~~~~~Li~a~~~Ls~f~l~-------l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L 578 (715)
T PF08314_consen 506 TFPNSPRIQREKDLIKATHALSEFSLV-------LQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNL 578 (715)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHhCCee-------cCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHH
Confidence 3 0011334455566665555444331 122211111110 12232222 222 345555555555
Q ss_pred HHcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH-HHHHHHHHHHhcCCHHH-------
Q 036072 530 IRRG---------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAPVL-DYNKFAADLSRAGRSYV------- 591 (631)
Q Consensus 530 ~~~g---------~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g-~~p~~~-~~~~li~~~~~~g~~~~------- 591 (631)
...| ...-..+....|++-...++++-|.++..++.... ..++.. .+...-.+|.+.|++..
T Consensus 579 ~~~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~p~~~~~~ 658 (715)
T PF08314_consen 579 VLAGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRSPEWFDNE 658 (715)
T ss_dssp HHH-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---TTSGGG-
T ss_pred HHHhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCCCCccccc
Confidence 5441 11123455566777778899999999998887641 111111 35555566666666544
Q ss_pred -----HHHHHHHHHhcC-------CCchHHHHHHHHHh
Q 036072 592 -----LDELAQKMRFSG-------KFEVSNVLARWAET 617 (631)
Q Consensus 592 -----A~~l~~~m~~~g-------~~~~~~~l~~~~~~ 617 (631)
...+..+|+--+ ...+..++..|.+.
T Consensus 659 ~~t~~~~~l~~r~elLs~aL~~cP~~~l~~iL~~W~~~ 696 (715)
T PF08314_consen 659 IPTEIIRDLEQRMELLSFALRHCPPDNLEEILAQWRRL 696 (715)
T ss_dssp --HHH---HHHHHHHHHHHHHHS-GGGHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 222444544322 23688888888854
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.71 E-value=1.1e+02 Score=26.28 Aligned_cols=46 Identities=2% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 487 A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
..+-++.+....+.|+......-+++|.+-+++..|.++|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555566666666666666766667777676666666543
No 374
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.43 E-value=2.9e+02 Score=27.82 Aligned_cols=91 Identities=9% Similarity=0.105 Sum_probs=40.5
Q ss_pred CchhHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHhcCC-hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 036072 224 ARRPAFRFFCWAGDKPGFAHNSRTYNSMM-SILGRARQ-FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI 301 (631)
Q Consensus 224 ~~~~A~~~f~~~~~~~g~~p~~~~y~~li-~~~~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v 301 (631)
..+.-+.+|.-+.-..|..| ..+++.|. +.+.+.|= ..-|.++|+...... ..+.++..+.+.+.-++.+++
T Consensus 145 ~Er~KLA~~Tal~l~nGt~~-~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek-----~i~~lis~Lrkg~md~rLmef 218 (412)
T KOG2297|consen 145 NERKKLAMLTALLLSNGTLP-ATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK-----DINDLISSLRKGKMDDRLMEF 218 (412)
T ss_pred HHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc-----cHHHHHHHHHhcChHhHHHHh
Confidence 33333344433322234333 44444444 33445442 334556665544322 245556665555555544444
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 302 FELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 302 ~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
| +|+..+-......+...|
T Consensus 219 f--------Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 219 F--------PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred c--------CCcchhHHHHHHHHhHhh
Confidence 3 555544444444444333
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.23 E-value=2.9e+02 Score=27.72 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-----KGMKAPVLDY 576 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~-----~g~~p~~~~~ 576 (631)
+++.....|..+|.+.+|.++.+..+..+ +.+...|-.|+..+...|+--.|.+-++.+.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34555666677777777777776666543 22556666777777777776666665555532 2555554443
No 376
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=49.21 E-value=2.3e+02 Score=26.52 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHHHHHH
Q 036072 395 KIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~ 411 (631)
+.|+++.|.++++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34666666666666654
No 377
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.92 E-value=3.3e+02 Score=28.34 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH-------HCCC-----C-------------CCHHHHH---HHHHHHHHcCC
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMV-------RSGF-----K-------------PTIHTYN---MIMKSYFQTGN 518 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~-------~~g~-----~-------------p~~~t~~---~Li~~~~~~g~ 518 (631)
...++..+-..+...|+.+.|.+++++.. ...+ . -|...|- ..|..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 45566667777888999888877777653 1122 1 1333333 44677888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI-SQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~ll~~m~~ 566 (631)
+..|.++.+-+...+..-|+..-..+|+.|+ +.++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999998776667777777888877 78888888888887665
No 378
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=48.75 E-value=3.2e+02 Score=28.07 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=11.8
Q ss_pred cCHHHHHHHHHHHHhCCCC
Q 036072 293 KERKKAVAIFELMNKYKFK 311 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~ 311 (631)
++..+|..+++.+.+.|..
T Consensus 257 ~~~~~a~~~~~~l~~~~~~ 275 (355)
T TIGR02397 257 KDTAEALKILDEILESGVD 275 (355)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 5666666666666665543
No 379
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.60 E-value=70 Score=32.49 Aligned_cols=53 Identities=8% Similarity=-0.124 Sum_probs=33.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~ 339 (631)
.+-|.++|++++|++.|....... +-+.+++..-..+|.+...+..|+.=.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 456777777777777776665542 22666666666677776666655544443
No 380
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.57 E-value=1.5e+02 Score=32.25 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=12.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 036072 438 CLITGFGNRRRMDIVYDLLKEM 459 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m 459 (631)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3555555555555555555555
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.13 E-value=73 Score=29.67 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 569 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..|+..+|..++.++...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777777777766654
No 382
>PLN03025 replication factor C subunit; Provisional
Probab=47.64 E-value=3.2e+02 Score=27.77 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHH
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFC 233 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~ 233 (631)
+...+++.|+.++++.+..++...+.+-+.++..++
T Consensus 167 L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 167 LMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344456678888888888888877666555655554
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.53 E-value=69 Score=22.25 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=16.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li 580 (631)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555555555555555555555554443
No 384
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.35 E-value=3.1e+02 Score=27.59 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 484 PDEAVRIYKEMVRSGF----KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 484 ~~~A~~l~~~m~~~g~----~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 559 (631)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 3456666666665311 334445555555556666655544444444432 255666667777777777776677
Q ss_pred HHHHHHHCC
Q 036072 560 YLEEMLEKG 568 (631)
Q Consensus 560 ll~~m~~~g 568 (631)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 777766643
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.84 E-value=52 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 537 ~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
|..-.-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344456666666666666666655543
No 386
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=46.54 E-value=5.2e+02 Score=29.86 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 036072 485 DEAVRIYKEMVRSGFKPTIHTYNMIMKSYF-QTGNYEMGRKVWDEMIRRGCCPDDN-SYTVLIGGLISQDRSGEAYKYLE 562 (631)
Q Consensus 485 ~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~ll~ 562 (631)
..|...|.........+...+.......++ .+++++.+..+|+.+...|.. +.. .|-..++.-...|+...|..+++
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R 521 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLR 521 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHH
Confidence 445555544443322222233333333333 468899999999998877543 333 55555555556788888988888
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 036072 563 EMLEKGMKAPVL--DYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 563 ~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A 592 (631)
.....-..|+.. ++..+...-...|.++.+
T Consensus 522 ~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~ 553 (881)
T KOG0128|consen 522 KAYSQVVDPEDALEVLEFFRRFEREYGTLESF 553 (881)
T ss_pred HHHhcCcCchhHHHHHHHHHHHHhccccHHHH
Confidence 887765566422 233333333444555443
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.01 E-value=1.5e+02 Score=33.04 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRS--GFKPTIHTYNMIMKSYFQTGNYE------MGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
+|+.+|..+|++-.+.++++..... |-+.-...||..|+...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988863 33444667888888888888764 2333333333 44478888888
Q ss_pred HHHHHH
Q 036072 545 IGGLIS 550 (631)
Q Consensus 545 i~~~~~ 550 (631)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.58 E-value=2.9e+02 Score=26.76 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=14.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC
Q 036072 514 FQTGNYEMGRKVWDEMIRRGCC 535 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~ 535 (631)
+..+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3566777788887777665433
No 389
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.06 E-value=76 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=17.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
.+.|-..++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 390
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=45.01 E-value=5.5e+02 Score=29.70 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 379 ~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
+..+..+...++... .|+..+++.+++.+.
T Consensus 193 v~I~deaL~~La~~s--~GD~R~lln~Le~a~ 222 (725)
T PRK13341 193 VDLEPEAEKHLVDVA--NGDARSLLNALELAV 222 (725)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 444555555555433 577777777776654
No 391
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.97 E-value=3.5e+02 Score=29.73 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=56.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHH
Q 036072 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454 (631)
Q Consensus 375 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (631)
.+.|+..+......++... .|+...|+.+++.+...| ....+...+-..+...+......++.++.. |+.+.++.
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~--~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~ 266 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYG--NGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLG 266 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 3456666666665555443 578888888887766543 122333333333344455555556666555 78999999
Q ss_pred HHHHHHHcCCCCCH
Q 036072 455 LLKEMEERGCPPDG 468 (631)
Q Consensus 455 l~~~m~~~g~~p~~ 468 (631)
++++|.+.|..|..
T Consensus 267 ~~~~l~~~g~~~~~ 280 (509)
T PRK14958 267 CVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHcCCCHHH
Confidence 99999999887653
No 392
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.96 E-value=51 Score=27.50 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCC
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD--RSGEAYKYLEEMLEKGMK 570 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~ll~~m~~~g~~ 570 (631)
..++..|...++.++|..-+.++.-.. -.......++..+...+ ..+.+..++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 455667777788888877777653221 12223333444333332 224455566666665543
No 393
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.60 E-value=1.1e+02 Score=30.72 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 488 ~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
.++|+.|.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 46777777888888887777777777777778888888888775 34446667766663
No 394
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.46 E-value=3.2e+02 Score=26.94 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=108.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhC---C--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCCh----hhHH
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKY---K--FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNL----TTYT 352 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~---g--~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~~----~~y~ 352 (631)
.+|..+.+.+++++....+..|+.. . -.-+....|.+++......+.+....+++.-.+. ...|. .|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3344444444444444444444321 0 0123344555555555444444444444332110 00011 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCcHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFK-----------PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVRS 420 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~-g~~p~~~~ 420 (631)
-|...|...+++....+++.++...--. -=...|..-|..|....+-.....+++....- .-.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 5666777778888888888877643111 11356778888888888877777888766542 12344333
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHH-HHHHHH---HcCCCCCHH--HHHHHHHHHHhcCC----hhHHHHH
Q 036072 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD-LLKEME---ERGCPPDGL--TYNALIKLMKIQKM----PDEAVRI 490 (631)
Q Consensus 421 ~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~---~~g~~p~~~--t~~~li~~~~~~g~----~~~A~~l 490 (631)
..+ |+.|. ..+..+.|++++|.. +|+..+ +.|-+-... -|..|...+.+.|- ..+|.
T Consensus 230 mGv-IRECG----------GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK-- 296 (440)
T KOG1464|consen 230 MGV-IRECG----------GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK-- 296 (440)
T ss_pred HhH-HHHcC----------CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC--
Confidence 222 22221 234456688887764 444443 334322222 23344444444431 11111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527 (631)
Q Consensus 491 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~ 527 (631)
-..-.|.+...+.|+.+|.. +++.+-.+++.
T Consensus 297 -----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 297 -----PYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred -----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 11123456667788888754 34444444443
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.41 E-value=74 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=37.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAP--VLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
...+.++|+..|+..++.-..+. ..++..++.+|+..|++.+++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999987643332 3457889999999999999887653
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.06 E-value=8.8e+02 Score=31.84 Aligned_cols=150 Identities=9% Similarity=0.029 Sum_probs=95.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
+..+--+++.+..|...++.-..... .....|..+...|+..++++.+..+...-. .+...++ -|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHhh
Confidence 33455567888899988888522111 122344455559999999998888876421 1222333 33445678
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI-MLEGLLKIGKRSDAIKLF 406 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~-li~~~~~~g~~~~A~~ll 406 (631)
|+++.|...|+.+...-++....++-++......|.++.+....+-...+ ..+....+++ =+.+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999998776666788888888877888888887766655543 2222333332 234445667777666665
Q ss_pred H
Q 036072 407 E 407 (631)
Q Consensus 407 ~ 407 (631)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
No 397
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.98 E-value=41 Score=25.22 Aligned_cols=50 Identities=14% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHc
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAA 292 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~ 292 (631)
|....++-+++..++..-.++++..+.++...|..+.++|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888888887777777664
No 398
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.71 E-value=4.1e+02 Score=27.94 Aligned_cols=61 Identities=8% Similarity=-0.084 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.+..+.+.|..+|+++.|.+.+.+.++-+. -.+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 344556666666666666666666544221 1233455555555666666665555555443
No 399
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.06 E-value=1e+02 Score=31.37 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=39.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
-|.+.|.+++|++.|...+.. .| |..++..-..+|.+...+..|+.=.+..+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 478888888888888877654 34 777777777788888888877766655554
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.64 E-value=66 Score=23.79 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
++++.++++.+... +-|..-.-.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444445444432 22333445567777777777777777776654
No 401
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=42.53 E-value=2.7e+02 Score=25.75 Aligned_cols=96 Identities=24% Similarity=0.209 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHH---HHHHHHHccCH-------HHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcC--
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKI---AMNAFAAAKER-------KKAVAIFELMNKYKFKAG-VDTINCLLENLGRS-- 327 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~---li~~~~~~g~~-------~~A~~v~~~m~~~g~~~~-~~~~~~Ll~~~~~~-- 327 (631)
|+.|.+.++.-...++.+.+.++. .+.-++..... ++|+.-|++.+.. .|+ ..++..+..+|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHh
Confidence 445555555555555555543332 22223223332 3333334444433 233 34555555554332
Q ss_pred --CChHHHHHHHHHHhc------ccCCChhhHHHHHHHH
Q 036072 328 --KLPKEAQLLFDKLKH------RFTPNLTTYTVLLGGW 358 (631)
Q Consensus 328 --g~~~~A~~l~~~m~~------~~~p~~~~y~~Li~~~ 358 (631)
.+..+|...|++..+ ...|+..+|+.-+...
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 233344444444322 1345555555555544
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.71 E-value=4.4e+02 Score=27.70 Aligned_cols=79 Identities=18% Similarity=0.052 Sum_probs=34.4
Q ss_pred HHHHHcCCChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcC
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA--HNIMLEGLLKIG 397 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g 397 (631)
+...+..|+.+.+..+++.-... ...+..- ...+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44455667776665555432111 0001111 1233344455554 34444455565554321 123344455666
Q ss_pred CHHHHHH
Q 036072 398 KRSDAIK 404 (631)
Q Consensus 398 ~~~~A~~ 404 (631)
+.+-+..
T Consensus 147 ~~~~v~~ 153 (413)
T PHA02875 147 DIKGIEL 153 (413)
T ss_pred CHHHHHH
Confidence 6554333
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.63 E-value=1.1e+02 Score=28.39 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 500 ~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666666666665554
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.56 E-value=50 Score=33.05 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
|+..|....+.||+++|+.++++....|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.53 E-value=2.3e+02 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 263 TMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 263 ~A~~l~~~m~~~g~--~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
.+.++|..|..+|+ -....|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888887776 3456777777777888888888888765
No 406
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.53 E-value=4.6e+02 Score=27.84 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
.+.+....++..+ .|+...++.+++.+...+...+ .+....++.........+...+..+++
T Consensus 174 i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~is 235 (413)
T PRK13342 174 LDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLIS 235 (413)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHHH
Confidence 3555555554433 5777777777766654311111 122222222221111112233444555
Q ss_pred HHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 357 GWCR---VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 357 ~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
++.+ ..+.+.|+.++..|.+.|..|....-..++.++-..|
T Consensus 236 a~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 236 ALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 5555 4788888888888888888877666666665554444
No 407
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=41.39 E-value=1.8e+02 Score=23.10 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 036072 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256 (631)
Q Consensus 177 ~~~~l~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~ 256 (631)
+.+.+..+++.| +.+......+.| ++...+..+=.........+.+++....++.|- ..|...|+.++.
T Consensus 6 t~~~l~~ia~~i------G~~Wk~Lar~LG--ls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~---~AT~~~L~~aL~ 74 (86)
T cd08318 6 TGEQITVFANKL------GEDWKTLAPHLE--MKDKEIRAIESDSEDIKMQAKQLLVAWQDREGS---QATPETLITALN 74 (86)
T ss_pred CHHHHHHHHHHH------hhhHHHHHHHcC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCc---cccHHHHHHHHH
Confidence 345666665544 333444445555 455555444333332234466665544455552 356777888888
Q ss_pred hcCChhHHHHHH
Q 036072 257 RARQFETMVSML 268 (631)
Q Consensus 257 ~~g~~~~A~~l~ 268 (631)
+.|.-+-|..+|
T Consensus 75 ~~~~~diae~l~ 86 (86)
T cd08318 75 AAGLNEIAESLT 86 (86)
T ss_pred HcCcHHHHHhhC
Confidence 887766666553
No 408
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.34 E-value=3e+02 Score=25.72 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=22.5
Q ss_pred HcCCChHHHHHHHHHHhcc---cCCChhhHHHHHH-HHHhcC--CHHHHHHHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLG-GWCRVK--NLMEAGRVWNEMID 376 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~-~~~~~g--~~~~A~~l~~~m~~ 376 (631)
...|++++|..-++++.+. ++.-...|..+.. +++..+ .+-+|.-++..+.+
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3445555555555554321 1112333444443 444443 34455555555444
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.62 E-value=5e+02 Score=27.96 Aligned_cols=109 Identities=7% Similarity=0.074 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
..++|.-+.+++|.+ +.. ...-..+...|+++.+...+......--....+..++++...+.|+++.|...-+.|..
T Consensus 309 s~~~~~~lr~~~~~p-~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 309 SQQLFAALRNQQQDP-VLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHHhCCCCc-hhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 445666665555432 222 22223344456777777666555433223455666777777777777777777776665
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 036072 308 YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340 (631)
Q Consensus 308 ~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m 340 (631)
..++ +++......-..-..|-++++...++++
T Consensus 386 ~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 386 NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred cccC-ChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 5432 2222222222222334555555555554
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.44 E-value=52 Score=32.91 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 501 PTIHT-YNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535 (631)
Q Consensus 501 p~~~t-~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 535 (631)
|+..+ |+..|+...+.||+++|+.++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44333 456777777777777777777777776654
No 411
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.42 E-value=2e+02 Score=23.42 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276 (631)
Q Consensus 197 ~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (631)
......++.| ++.+.+..+-.......+...+++....++.|- ..|++.|+.++.+.|.-..|..+-+.+...|.
T Consensus 21 ~Wk~laR~LG--Lse~~I~~i~~~~~~~~eq~~qmL~~W~~~~G~---~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 21 SWNRLMRQLG--LSENEIDVAKANERVTREQLYQMLLTWVNKTGR---KASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 3455556665 777777777666555544566665544455554 46788899999988888888888777766653
No 412
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.18 E-value=3.1e+02 Score=31.28 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHh
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~ 235 (631)
+...+++.|+.++.+.+..+.+......+.++.+++.+
T Consensus 187 L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqa 224 (709)
T PRK08691 187 LAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224 (709)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45556777888888888777777666656666666543
No 413
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.71 E-value=6.7e+02 Score=29.22 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLS--METFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
..+.+.|...|+|+.|+++-+.- |+ ..++..-...|...+.+..|-+++.++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~-----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR-----PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 35667777888888887764322 11 1133344456667777888888777763
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.55 E-value=77 Score=34.62 Aligned_cols=134 Identities=12% Similarity=-0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 036072 262 ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 262 ~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~ 341 (631)
+-+..++..|....-+-.-..|...-.+...|+...|...+.........-..+....|.....+.|....|..++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Q ss_pred cccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 342 HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 342 ~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
.-....+-++..+.++|.-..+++.|++.|++..+. -..+.+.-+.|...-|+.
T Consensus 670 ~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~-~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 670 AINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL-TTKCPECENSLKLIRCMQ 723 (886)
T ss_pred hhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhh
No 415
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.48 E-value=3.3e+02 Score=25.54 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGC--------------CPDDNSYTVLIGGLISQDRSGEAYKYLE 562 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~--------------~p~~~t~~~li~~~~~~g~~~~A~~ll~ 562 (631)
-++|-.|-+.-++.++.++++.|.+..+ .+--...|.....|.+.|..+.|+.+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4566677777788888888887766422 1223344555555666666666666665
No 416
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.99 E-value=3.6e+02 Score=30.41 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~ 312 (631)
+......++.++.. ++...++++++.+.+.|..+
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 34444444444443 66777777777777766443
No 417
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.64 E-value=6.8e+02 Score=28.96 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHHH
Q 036072 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-----GEAYKYLEEMLEKGMKAPVLD 575 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-----~~A~~ll~~m~~~g~~p~~~~ 575 (631)
+...+.++++++ ++.++.+.|...+..|++.|..|....-..++.+...-|.. .-|...++.....|++--...
T Consensus 257 ~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~ 335 (725)
T PRK13341 257 AHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYP 335 (725)
T ss_pred CCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhH
Confidence 344455555554 34578999999999999998887776666666665554532 233444444555565443444
Q ss_pred HHHHHHHHHhcCCHHHH---HHHHHHHHhcCCCchHHHH
Q 036072 576 YNKFAADLSRAGRSYVL---DELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 576 ~~~li~~~~~~g~~~~A---~~l~~~m~~~g~~~~~~~l 611 (631)
....+-.++.+-+...+ .+.++.++..+...+..-+
T Consensus 336 laq~~~~la~apKSns~~a~~~a~~~~~~~~~~~vP~hl 374 (725)
T PRK13341 336 LAQAALYLATAPKSNSVLGFFDALKKVREEQVQDVPNHL 374 (725)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHhcCCCCCChHH
Confidence 44444444444443333 2233334444444444443
No 418
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.53 E-value=71 Score=23.96 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036072 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585 (631)
Q Consensus 536 p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 585 (631)
|....++.++..+++..-.++++.++.++.+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445566666666666666667777777766663 455555555555554
No 419
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.27 E-value=1.2e+02 Score=26.82 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 267 MLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 267 l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
+.+.+++.|.--...-..++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555653333445556666666666677777777776665555555444455554444
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.85 E-value=3.7e+02 Score=30.00 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
.-.-++..|.+.|-.+.|.++.+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~ 430 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKI 430 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444444444444443
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.86 E-value=2e+02 Score=26.68 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.+-.|.+.|.+++|.++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34566667777777777766665
No 422
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.85 E-value=5.2e+02 Score=28.10 Aligned_cols=89 Identities=9% Similarity=0.012 Sum_probs=54.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 377 ~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
.|+..+......++.. ..|+...|+.+++.....+ ....++..+...+.-.+...+..++.+....+....|+.++
T Consensus 196 Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l 271 (484)
T PRK14956 196 ENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEIL 271 (484)
T ss_pred cCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4666666665555432 4588888888887765432 11234444444444345555666666666655567788888
Q ss_pred HHHHHcCCCCCHH
Q 036072 457 KEMEERGCPPDGL 469 (631)
Q Consensus 457 ~~m~~~g~~p~~~ 469 (631)
.+|.+.|..|...
T Consensus 272 ~~l~~~G~d~~~~ 284 (484)
T PRK14956 272 ESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHcCCCHHHH
Confidence 8888888766543
No 423
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.66 E-value=5e+02 Score=26.90 Aligned_cols=250 Identities=14% Similarity=0.178 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCCh----hhHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL----TTYT 352 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~----~~y~ 352 (631)
+++++.-.+++-|....+.+....+-... ..+.+.+-.++.+.+.......+..+......+.. ..-.
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~ 144 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHA 144 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHH
Confidence 34555555555555555433322221111 12344455556666666555555554443322222 2334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDK-----G-FKPDVVAHNIML--EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~ty~~li--~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l 424 (631)
-++..+.+.+++..++..++.-... + ..|.......+- -.|...++++.|+.+|+...- .|....-...
T Consensus 145 ~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~h 221 (422)
T KOG2582|consen 145 DLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHIH 221 (422)
T ss_pred HHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHHH
Confidence 4566677777776666555433221 1 111111100000 113456789999999988764 3443333334
Q ss_pred HHHHhhcCHHHHHHHHHHHhccCCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 425 IWKFCKQNAAVYTCLITGFGNRRRM--------DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 425 i~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
+.+|-+- ++-.+.-.|+. ..|.+.|+ |-..-|.-++++|.+...-+ .+.+..+-.
T Consensus 222 lEaYkky-------lLvsLI~~GK~~ql~k~ts~~~~r~~K--------~ms~pY~ef~~~Y~~~~~~e-Lr~lVk~~~- 284 (422)
T KOG2582|consen 222 LEAYKKY-------LLVSLILTGKVFQLPKNTSQNAGRFFK--------PMSNPYHEFLNVYLKDSSTE-LRTLVKKHS- 284 (422)
T ss_pred HHHHHHH-------HHHHhhhcCceeeccccchhhhHHhcc--------cCCchHHHHHHHHhcCCcHH-HHHHHHHHH-
Confidence 4333321 23333334443 22222222 22224666666665443322 111111111
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL----IGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 497 ~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----i~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
..+.+-++..-|...+..+.++.+.--..||.+| |....+.+..++|.+..-+|.+.|
T Consensus 285 --------------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 285 --------------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred --------------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 1233456666666666666666444445555554 333335577778888888887765
No 424
>PRK10941 hypothetical protein; Provisional
Probab=36.39 E-value=4.4e+02 Score=26.19 Aligned_cols=78 Identities=9% Similarity=0.008 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK-FKAGVDTINCLLEN 323 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g-~~~~~~~~~~Ll~~ 323 (631)
...+.+-.+|.+.++++.|+.+.+.+..-.+.++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455666667788888888888888888777776666666666888888888888777776542 23444444444433
No 425
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=36.19 E-value=68 Score=18.17 Aligned_cols=25 Identities=12% Similarity=0.446 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 506 YNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 506 ~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
|..+...+...|++++|...|+..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555555555555555444
No 426
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.86 E-value=7e+02 Score=28.35 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=32.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+....+.++++.+...+..|.+..- -...-.--+..++...|+.++|..+|+.+.
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444466777777777777644321 123333345556556777777777777764
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.36 E-value=1.6e+02 Score=32.76 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=63.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEER--GCPPDGLTYNALIKLMKIQKMPD------EAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~------~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
.|..+|..+|++..+..+++.+... |-+.-...||..|+.+.+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8899999999999999999998764 43444568899999999999764 3444444433 55688889888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+.+-..--.-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333344445555554
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.31 E-value=2.9e+02 Score=25.62 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=16.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 45567777777777777777665
No 429
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=35.10 E-value=4.9e+02 Score=28.12 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
..++++|+++.++.++.+-..+ .|-+..|.++|.++.+.|+.||..| |..+....+
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvt-----------DQTSaHdp~ 262 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVT-----------DQTSAHDPL 262 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcC-----------CCCcccCcc
Confidence 3578888888888887654322 2345567888889999899888776 323333334
Q ss_pred HHHhccC-CHHHHHHHH
Q 036072 441 TGFGNRR-RMDIVYDLL 456 (631)
Q Consensus 441 ~~~~~~g-~~~~A~~l~ 456 (631)
.+|+-.| .++++.++.
T Consensus 263 ~GY~P~g~t~ee~~~lr 279 (545)
T TIGR01228 263 NGYIPEGYTVEDADKLR 279 (545)
T ss_pred cccCCCCCCHHHHHHHH
Confidence 4455555 455555444
No 430
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.03 E-value=4.8e+02 Score=26.16 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=26.6
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+..+.+..........+..++. ...-...+......|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~~-----v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIKT-----VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3334444444444444444432 23334445556667777777777766654
No 431
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.95 E-value=7.5e+02 Score=28.37 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=53.2
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 036072 365 MEAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443 (631)
Q Consensus 365 ~~A~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~ 443 (631)
++....+.... ..|+..+......++... .|+...|+.+++.+...|. ...+...+-..+...+......|+.++
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 34444444333 346776776666666544 5888888888877665331 112222222222222333444445555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC
Q 036072 444 GNRRRMDIVYDLLKEMEERGCPP 466 (631)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~g~~p 466 (631)
.+ ++...++.++++|.+.|+.+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCH
Confidence 44 57777777777777776653
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.77 E-value=39 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~ 582 (631)
..|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34556667777777777776666 45555544
No 433
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.21 E-value=4e+02 Score=27.16 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
..|..+..+.|+..+|.+.|+.+.+.- +.--......||.+|....-+.+...++-+..+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445556777777777777665431 110112234566666666666555555554443
No 434
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.08 E-value=7e+02 Score=27.77 Aligned_cols=265 Identities=8% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHhhcchHHHHHHHHhcCCCCCHHHHHHHHHhhccCchh-HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 036072 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRP-AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETM 264 (631)
Q Consensus 186 ~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~-A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A 264 (631)
++...+..+.+.....+.+ .+...+..+++.++..... -.+++..+.. .. ...+..+++++...|-....
T Consensus 289 ~~~~~l~~L~~~~~~~~~~----~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~ 359 (574)
T smart00638 289 QIVEVLKHLVQDIASDVQE----PAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPAL 359 (574)
T ss_pred hHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHH
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCCh-----
Q 036072 265 VSMLEEMGEKGLLSMETFKIAMNAFAA--AKERKKAVAIFELMNKYKFKAGV-------DTINCLLENLGRSKLP----- 330 (631)
Q Consensus 265 ~~l~~~m~~~g~~~~~~~~~li~~~~~--~g~~~~A~~v~~~m~~~g~~~~~-------~~~~~Ll~~~~~~g~~----- 330 (631)
.-+.+.+....+.+.+.-..+..+... .-..+-...+++.+......... .+|..+++-+|.....
T Consensus 360 ~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~ 439 (574)
T smart00638 360 KFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV 439 (574)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh
Q ss_pred -HHHHHHHHHHhcc--cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 036072 331 -KEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI--GKRSDAIKL 405 (631)
Q Consensus 331 -~~A~~l~~~m~~~--~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--g~~~~A~~l 405 (631)
++....+.+.... ..-|..--...|.+....|. ..+...+..........+...-...+.++.+. ...+.+..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~ 518 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV 518 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH
Q ss_pred HHHHHHc-CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 036072 406 FEVMKAK-GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 406 l~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
+-..-.. +..++..+...++-.-++.+...+..+........+..-+--++..++
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 435
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.08 E-value=3.4e+02 Score=28.22 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC
Q 036072 276 LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 276 ~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~ 313 (631)
..+......++.+.. .++..++..+++.+.+.|..|.
T Consensus 243 ~~~~~~i~~l~~ai~-~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 243 LLNEKQSFLLTDALL-KKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 344555555555543 3677788888888877764443
No 436
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=34.04 E-value=7.2e+02 Score=27.95 Aligned_cols=29 Identities=14% Similarity=-0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~ 313 (631)
.++.+ ...|+.++|+.+++.+...|..|.
T Consensus 264 ~L~~a-i~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 264 DLFEA-LMRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHcCCCHH
Confidence 34443 334677778877777777765443
No 437
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.75 E-value=8.2e+02 Score=28.48 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 036072 365 MEAGRVWNEMI-DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443 (631)
Q Consensus 365 ~~A~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~ 443 (631)
++..+.++... ..|+..+......+++. ..|++.+|+.+++.....+- +..+...+...+...+...+..++..+
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~--~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSA--NEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44445555443 34666666555544443 35788888888776654321 122333232333333444455555544
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC
Q 036072 444 GNRRRMDIVYDLLKEMEERGCPP 466 (631)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~g~~p 466 (631)
.. ++..+++.+++++...|+.+
T Consensus 257 ~~-~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AA-GDGPEILAVADEMALRSLSF 278 (830)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCH
Confidence 44 78888888888888877754
No 438
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.74 E-value=1.7e+02 Score=27.12 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-----------RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-----------~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
+++|..-|++....++...+++..+..+|...+. +++|.+.|+..... +|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH----
Confidence 4455555556666666666777777777766532 45566666666654 799999999888764
Q ss_pred hHHHHHHHHHHh
Q 036072 330 PKEAQLLFDKLK 341 (631)
Q Consensus 330 ~~~A~~l~~~m~ 341 (631)
+|-++..++.
T Consensus 125 --kap~lh~e~~ 134 (186)
T PF06552_consen 125 --KAPELHMEIH 134 (186)
T ss_dssp --THHHHHHHHH
T ss_pred --hhHHHHHHHH
Confidence 3445555543
No 439
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.70 E-value=3.7e+02 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=23.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHh
Q 036072 200 AVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235 (631)
Q Consensus 200 ~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~ 235 (631)
..+.+.|..++++.+..+....+.+.+.+...++.+
T Consensus 178 ~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 178 GIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334566778888888887777666555566555543
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.69 E-value=41 Score=29.27 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=25.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
.-+.|.-.+|..+|..|.+.|-.||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33456777888999999999988885 67776543
No 441
>PHA02940 hypothetical protein; Provisional
Probab=33.59 E-value=4.5e+02 Score=25.45 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036072 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493 (631)
Q Consensus 414 ~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 493 (631)
+.|+...-+..+-.+.+.-..+...++..|.+.++.++-..+-+++.+. + ...+..--+.-+++.+.+-++.
T Consensus 123 ik~~~~~t~~~~i~FtqkA~dtv~~la~~yvq~vk~d~r~~~a~~l~ke-L-------s~~~d~~enepdle~d~keie~ 194 (315)
T PHA02940 123 IKPEPTLTTPLFIDFTQKAKDTVILLAGRYVQDVKKDDRRTIANKLSKE-L-------SWTIDYQENEPDLESDFKEIEE 194 (315)
T ss_pred CCCCCCcCchHHHHHHHHhhhHHHHHHHHHHHHccccHHHHHHHHHHhh-h-------hHHHHHHhcCcchhhhHHHHHH
Confidence 4444433344444444445556677788888888877766666655432 1 1112222344567888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHH
Q 036072 494 MVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 494 m~~~g~~p~~~t~~~Li~~~~ 514 (631)
|.+..-.....||+.|+.++-
T Consensus 195 ~lE~~~dl~rGtY~vL~~ald 215 (315)
T PHA02940 195 ELEEKDDLSRGTYKVLKRALD 215 (315)
T ss_pred HHhccchhhhhHHHHHHHHHH
Confidence 888766777788988887754
No 442
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.41 E-value=2.7e+02 Score=30.45 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 472 NALIKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 472 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
..++.-|.+.+++++|..++..|.=... ..-....+.+++.+.+..--++.+..++.+...=..|....-...+..|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 4566789999999999999998862211 112234455666666666566666777776654222222211222222222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 036072 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 607 (631)
.=.+-|.++|..|++.+ .|..........|+.|.-+++.-.....|...+
T Consensus 492 -~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~ge~~L 541 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKGELAL 541 (545)
T ss_pred -HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhccchhh
Confidence 12244666666666654 444444445566666666666666666665443
No 443
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.37 E-value=7.5e+02 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK 311 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~ 311 (631)
.+...+..++..+. .++...++.+.+.+.+.|..
T Consensus 249 ~d~~~i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 249 IDQSYLVRLLDALA-AEDGAALLAIADEMAGRSLS 282 (700)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 34444555555444 46666667777666666644
No 444
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.27 E-value=73 Score=18.93 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVL 354 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~L 354 (631)
+.+.|..+|+.+....+-+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34444555555444333344444433
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.21 E-value=5.1e+02 Score=25.98 Aligned_cols=146 Identities=10% Similarity=0.094 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 449 MDIVYDLLKEMEERGC----PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 524 (631)
.+.|.+.|+.....+. ..+......++....+.|..+.-..+++.... ..+..--..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888877422 45666777777777888886665555555554 3466777888999998999999899
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHH----HHHCCCCCCHHHHHHHHHHH----HhcCCHHHHH
Q 036072 525 VWDEMIRRG-CCPDDNSYTVLIGGLISQDRS--GEAYKYLEE----MLEKGMKAPVLDYNKFAADL----SRAGRSYVLD 593 (631)
Q Consensus 525 ~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~--~~A~~ll~~----m~~~g~~p~~~~~~~li~~~----~~~g~~~~A~ 593 (631)
+++.+...+ +.+. .. ..++.++...+.. +.+.+++.+ +.+. +.........++..+ +.....+++.
T Consensus 223 ~l~~~l~~~~v~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TT-TH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccH-HH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 999888854 4433 33 3444455534443 677766643 3222 222222344444443 3344455566
Q ss_pred HHHHHHH
Q 036072 594 ELAQKMR 600 (631)
Q Consensus 594 ~l~~~m~ 600 (631)
++++.-.
T Consensus 300 ~f~~~~~ 306 (324)
T PF11838_consen 300 EFFEDKP 306 (324)
T ss_dssp HHHHHHC
T ss_pred HHHhhCc
Confidence 6665443
No 446
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=33.15 E-value=3.5e+02 Score=25.51 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=51.7
Q ss_pred HHHHHhhccCc-hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 036072 215 VDVLERFRHAR-RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRAR-QFETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291 (631)
Q Consensus 215 ~~vl~~~~~~~-~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~ 291 (631)
..-|-..+..+ +.|=.+..++-.++-+.+|.+|.-.+=+...-.+ ++++..++|++=...+..--.-|+++|..+++
T Consensus 114 R~~LL~iKGIG~ETaDsILlYa~~rp~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~~l~~~~~lyqe~HAlIv~~~K 192 (215)
T COG2231 114 REELLSIKGIGKETADSILLYALDRPVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEENLPENLRLYQEFHALIVEHAK 192 (215)
T ss_pred HHHHHccCCcchhhHHHHHHHHhcCcccchhHHHHHHHHHhcccccccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 33444444444 4477788888889999999999887777766555 58888888876443333333456777776665
No 447
>PRK09687 putative lyase; Provisional
Probab=33.06 E-value=5.1e+02 Score=25.85 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
++..+-...+.++.+.++ ..|...+-+..+.+. .....+.++...|.. +|...+..+.+. .||..+-...+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~ 274 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAI 274 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHH
Confidence 355555566666666666 344444444444321 123455666666664 466666666543 23544444444
Q ss_pred HHH
Q 036072 546 GGL 548 (631)
Q Consensus 546 ~~~ 548 (631)
.+|
T Consensus 275 ~a~ 277 (280)
T PRK09687 275 DKL 277 (280)
T ss_pred HHH
Confidence 433
No 448
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.46 E-value=5.4e+02 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 482 (631)
|.+.|+-++..|.+.|..|....-..++.++-.-|
T Consensus 141 DpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 141 DPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45555555555555555444444444444444444
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.01 E-value=4.8e+02 Score=25.27 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAA-AKERKKAVAIFELMNK 307 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~-~g~~~~A~~v~~~m~~ 307 (631)
-.+++.+-+.++++++...++++...+. ++.+-.+.+-.+|-. .|....+..++..+.+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3567778889999999999999998876 577766666666633 3555566666655544
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.63 E-value=1.9e+02 Score=28.17 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMID----KG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455666667777777777766642 12 22334455556667777777777766655543
No 451
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.30 E-value=5.1e+02 Score=28.46 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~ 313 (631)
.+......++.+... ++.++|+.+++.+...|..|.
T Consensus 256 ~~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 256 VDSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 444555555555544 889999999999998886554
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.73 E-value=2.2e+02 Score=27.77 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 508 MIMKSYFQTGNYEMGRKVWDEMIR----RGC-CPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 508 ~Li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++...|+.++.+.+.-+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556666777777766666532 121 122333444455555556555555544443
No 453
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.70 E-value=3.2e+02 Score=22.89 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
.++|..+.+-+...+.. ...+--+-+..+.+.|++++|+ ..-.. .-.||...|-. -+-.+.|-.+.+...+.+
T Consensus 22 H~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-~~~pdL~p~~A--L~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL---LLPQC-HCYPDLEPWAA--LCAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH---HHHTT-S--GGGHHHHH--HHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH---Hhccc-CCCccHHHHHH--HHHHhhccHHHHHHHHHH
Confidence 45555555544443321 1222222333455666666661 11111 12444444432 233556666666666666
Q ss_pred HHhcCCCchH
Q 036072 599 MRFSGKFEVS 608 (631)
Q Consensus 599 m~~~g~~~~~ 608 (631)
+..+|....-
T Consensus 95 la~~g~~~~q 104 (116)
T PF09477_consen 95 LASSGSPELQ 104 (116)
T ss_dssp HCT-SSHHHH
T ss_pred HHhCCCHHHH
Confidence 6665544333
No 454
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.20 E-value=8.4e+02 Score=27.53 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=22.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
.-.+|-.|.+.|.+++|.++....... +......+...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345556666667777776666444332 233334445555555543
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.97 E-value=2.5e+02 Score=28.36 Aligned_cols=58 Identities=10% Similarity=0.300 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 453 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
.++++.|.++++.|.-..|..+.-.+.+.=.+..++.+|+.+.... .-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHH
Confidence 5788899999999999999998888888889999999999998632 337777777764
No 456
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.94 E-value=1.8e+02 Score=24.44 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 036072 239 PGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288 (631)
Q Consensus 239 ~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~ 288 (631)
.|+.|+ +|+.+.++...++|+++++-|.+.|-.+.+.-+.|-..
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~ 104 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSI 104 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 466664 45667788899999999999999998876654444433
No 457
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.83 E-value=6.8e+02 Score=27.50 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC
Q 036072 275 GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 275 g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~ 313 (631)
|..+......++.++.. ++.++++.+++.|...|..+.
T Consensus 242 g~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 242 GTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34455556666666544 788888888888888886654
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.77 E-value=7.6e+02 Score=26.87 Aligned_cols=360 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhCC
Q 036072 231 FFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-RKKAVAIFELMNKYK 309 (631)
Q Consensus 231 ~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-~~~A~~v~~~m~~~g 309 (631)
+|.+..--..+..|+..|..-+..+-+.+.+.+...+|.+|....+.+++.|-....-....+. ++.|..+|..-++..
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Q ss_pred CCcCHHHHHHHHHHHH----------------------cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHH
Q 036072 310 FKAGVDTINCLLENLG----------------------RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 310 ~~~~~~~~~~Ll~~~~----------------------~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A 367 (631)
+-++..|....+.-. .-.+.+.+...+..-.+...-.....+ .+..-+.....+-
T Consensus 171 -pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d~~kel 247 (568)
T KOG2396|consen 171 -PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE--LSVAEKFDFLKEL 247 (568)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc--hHHHHHHHHHHHH
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 036072 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLK-------------------IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~~ty~~li~~~~~-------------------~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 428 (631)
.+-.-+-...+..-|+.+|.-+..-... .-+.+....+|++..+ ..|+...++..|..+
T Consensus 248 ~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~ 325 (568)
T KOG2396|consen 248 QKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFC 325 (568)
T ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Q ss_pred hhc------------------------------------------------------------CHHHHHHHHHHHhcc--
Q 036072 429 CKQ------------------------------------------------------------NAAVYTCLITGFGNR-- 446 (631)
Q Consensus 429 ~~~------------------------------------------------------------~~~~~~~li~~~~~~-- 446 (631)
... +...|-.-+....+.
T Consensus 326 lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s 405 (568)
T KOG2396|consen 326 LERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS 405 (568)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY-NMIMKSYFQTGNYEMGRK 524 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~Li~~~~~~g~~~~A~~ 524 (631)
.---...++|..+...-..+-...|++.. ..+......+.....+..+. .++..|+ +.+++-+...|-..+|.+
T Consensus 406 D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l~~~~e~~~~~~ark 481 (568)
T KOG2396|consen 406 DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI----GADSVTLKSKYLDWAYESGGYKKARK 481 (568)
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc----CCceeehhHHHHHHHHHhcchHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 525 VWDEMIRRGCCPDDNSYTVLIGGLI--SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 525 ~~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
++..+... ..|+...|..+|..=. .+-+..-+.++++.|... +..|+..|...+.--...|..+.+-.++-+...
T Consensus 482 ~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 482 VYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhccCCCcccccHHHHHHHH
No 459
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.73 E-value=2.5e+02 Score=24.87 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 455 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
+...+++.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444556667665543 34456666666666777777777777665555555555555555554
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=5.9e+02 Score=25.56 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMV----RSGFKPTIHTY-NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD--- 538 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~-~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 538 (631)
....+..+..-|++.++.+.+.++..+.. ..|.+.|+... ..|.-.|....-+++-++..+.|+++|..-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 34566677778888888887777665544 34666664332 22223333344467777778888887754332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 539 -NSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 539 -~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.+|..+. +....++.+|-.++-+.+.
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2333332 2234566777777766553
No 461
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.47 E-value=2.1e+02 Score=22.49 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHH
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~l 285 (631)
+++.+.++.--++|+++++-|.++|-.+++.-+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L 71 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPEMAKAL 71 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45667788888899999999998888776644433
No 462
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.46 E-value=6.5e+02 Score=25.64 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.-+.++++..+.+ .-+......+|..+.+..+.++..+.|+++...... +...|..+|....
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q 110 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHH
Confidence 3444555555442 234444455555555555555555555555554222 4445555554433
No 463
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.45 E-value=6.2e+02 Score=25.41 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCH
Q 036072 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR----RGCCPDD 538 (631)
Q Consensus 464 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~ 538 (631)
++.|...+|.|+.- +..+.++--+-+++..+ .|-.--...+..+..-|++.++.+.+.+...+..+ .|.+.|+
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 44455666666542 11122222222223322 22233356677888999999999999888776654 3666554
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH-HhcCCHHHHHHHHHHH
Q 036072 539 NSYTVLIG-GLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADL-SRAGRSYVLDELAQKM 599 (631)
Q Consensus 539 ~t~~~li~-~~~~~g~~~~A~~ll~~m~~~g~~p~~~~-~~~li~~~-~~~g~~~~A~~l~~~m 599 (631)
..-.+-+. .|....-.++-++..+.|.++|..-+... |...-..+ ....++.+|-.++...
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 43222221 12233345788889999999886655433 32222222 2334566666666554
No 464
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.37 E-value=1.1e+03 Score=28.08 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Li~~~~~~g 517 (631)
|..++..-...+...|++-.|.+++.++.+ .|-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 444444444555566777777777766665 445566666665555555554
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.35 E-value=3.8e+02 Score=22.98 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 556 EAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 556 ~A~~ll~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
++.++|+.|..+|+.-. ..-|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555544332 3335555555555555555555554
No 466
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.31 E-value=3.1e+02 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=14.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036072 545 IGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.......|+.++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344566778888877777764
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.87 E-value=2.6e+02 Score=23.12 Aligned_cols=20 Identities=25% Similarity=0.022 Sum_probs=8.7
Q ss_pred HHHHHcCCChHHHHHHHHHH
Q 036072 321 LENLGRSKLPKEAQLLFDKL 340 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m 340 (631)
+.-|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444555554444443
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.39 E-value=5.9e+02 Score=24.81 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=78.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
-+..|.+.-++.-|....+++.+ ....-.+++ -|.+..+.+--.++.+-....++.-+..-..+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 35555555666666555555443 112222222 3555555544455555555556555555544443 345778
Q ss_pred HHHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRR-G-----------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 519 ~~~A~~~~~~m~~~-g-----------~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
+.+|..-++.-... | -.|.+.....++..|. .+++++|.+.+.++-+.|+.|... .+++.+++
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 77777777654431 1 1467777777777655 478999999999999999887543 23333433
No 469
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.36 E-value=2.1e+02 Score=20.36 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=17.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~ 574 (631)
+.-++.+.|++++|.++.+.+++. .|+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 445667777777777777777763 45443
No 470
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.34 E-value=3.7e+02 Score=22.54 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=4.8
Q ss_pred HHHHHHHhhc
Q 036072 228 AFRFFCWAGD 237 (631)
Q Consensus 228 A~~~f~~~~~ 237 (631)
|..+.+|+..
T Consensus 25 A~tIa~wL~~ 34 (116)
T PF09477_consen 25 ANTIADWLEQ 34 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4445555443
No 471
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.18 E-value=1.8e+02 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577777777777777777777777766
No 472
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.11 E-value=3.1e+02 Score=23.62 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~l~ 596 (631)
++.+.+.|.......-.|-- ..|-.+++.+ ++..++|..|..+|+...... |......+...|++.+|.+++
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HH
Q 036072 597 QK 598 (631)
Q Consensus 597 ~~ 598 (631)
+.
T Consensus 123 ~~ 124 (125)
T smart00777 123 QL 124 (125)
T ss_pred Hc
No 473
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.04 E-value=7.3e+02 Score=25.81 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC---cHHHHHHHHHHHhhcCHHHHHHH---HHHHhccCC
Q 036072 382 DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-------GPSP---NVRSYTIMIWKFCKQNAAVYTCL---ITGFGNRRR 448 (631)
Q Consensus 382 ~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~-------g~~p---~~~~~~~li~~~~~~~~~~~~~l---i~~~~~~g~ 448 (631)
-+.++..+-..+...|+.+.|.+++++..-. .+.+ +....+.-+..-...|...|-++ |..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4566777778888999998888888776421 1100 00000000000000144455554 667889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCH--
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMK-IQKMPDEAVRIYKEMVRS------GFKPTIHTYNMIMKSYFQTGNY-- 519 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~Li~~~~~~g~~-- 519 (631)
+..|+++.+-+......-|+.....+|..|+ +.++++--+++++..... ..-|+ ..|+..+ ++...++.
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL-A~~~l~~~~~ 196 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL-AYFRLEKEES 196 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH-HHHHhcCccc
Confidence 9999999999988766657766667777664 667777788888776542 11333 3344433 33344444
Q ss_pred -------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 520 -------------EMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 520 -------------~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
+.|...+.+.... =+.+...|+..+
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l 234 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL 234 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh
Confidence 6777777666554 344444555544
No 474
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=6.5e+02 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=13.8
Q ss_pred HHHHHHhccCCHHHHHHHHHH
Q 036072 438 CLITGFGNRRRMDIVYDLLKE 458 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~ 458 (631)
.+|..+.+.|.+.+|+.+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 456667777777777765543
No 475
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=26.82 E-value=7.8e+02 Score=27.03 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=50.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHH
Q 036072 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455 (631)
Q Consensus 377 ~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 455 (631)
.|+..+......++.. ..|+...|+.+++.+...+- .....+...+-..+...+......|+.+..+ |+.+.|+.+
T Consensus 203 egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~-~d~~~Al~~ 279 (507)
T PRK06645 203 ENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIH-RETEKAINL 279 (507)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 4555555555544442 34677777777766643211 1112333333333333344444455555554 799999999
Q ss_pred HHHHHHcCCCCCH
Q 036072 456 LKEMEERGCPPDG 468 (631)
Q Consensus 456 ~~~m~~~g~~p~~ 468 (631)
++++...|..|..
T Consensus 280 l~~L~~~g~~~~~ 292 (507)
T PRK06645 280 INKLYGSSVNLEI 292 (507)
T ss_pred HHHHHHcCCCHHH
Confidence 9999998887653
No 476
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.82 E-value=3.3e+02 Score=21.77 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=29.6
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 359 CRVKNLMEAGRVWNEMIDK----GFKPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~----g~~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
.+.|++.+|.+-+....+. +.... ....-.+.......|+.++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566776665555444432 22111 11222344556677888888888888765
No 477
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.76 E-value=1.2e+03 Score=28.29 Aligned_cols=28 Identities=7% Similarity=-0.116 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
-|..+++.+-+.+-.+.+.++-....+.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~ 1012 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN 1012 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4667777777788888888877666654
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.73 E-value=3.5e+02 Score=24.59 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
+....+-+.+++.|+..+..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|
T Consensus 8 ~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 8 ELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 479
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.53 E-value=7.7e+02 Score=25.86 Aligned_cols=125 Identities=15% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHH--HHHHHHHHH--HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVD--TINCLLENL--GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~--~~~~Ll~~~--~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~ 361 (631)
+..+...+++..|.++|+.+.+. ++++.. .+..+..+| ...-++++|.+.++.......+-..-...+.....-.
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 036072 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK---IGKRSDAIKLFEVMKA 411 (631)
Q Consensus 362 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~---~g~~~~A~~ll~~m~~ 411 (631)
+..+....-.+.....+-.+.......|+..-.+ .|+++.|.-.+-++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.49 E-value=6.6e+02 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH
Q 036072 571 APVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~ 591 (631)
-|+..|..+..+|.-.|+...
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHH
Confidence 455566666666666665443
No 481
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=26.12 E-value=4.3e+02 Score=22.82 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~ 291 (631)
+...++.+....-.-.+.++..++......+.+..+..+..|.+
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~ 64 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIK 64 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 55566666666666667777777766665566655555555444
No 482
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.06 E-value=8.7e+02 Score=26.36 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=53.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 377 ~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
.|+..+......++.. ..|+...|+..++.+....- +..+...+-..+..........++.+. ..++++.|..++
T Consensus 192 egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~--~~It~e~V~~~l~~~~~~~i~~li~si-~~~d~~~Al~~l 266 (472)
T PRK14962 192 EGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSE--GKITLETVHEALGLIPIEVVRDYINAI-FNGDVKRVFTVL 266 (472)
T ss_pred cCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHcCCCHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3555555555444442 24666666666665443210 012222222222222333334444444 347899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036072 457 KEMEERGCPPDGLTYNALIKLMKIQK 482 (631)
Q Consensus 457 ~~m~~~g~~p~~~t~~~li~~~~~~g 482 (631)
.+|...|..|....-..+..++-..|
T Consensus 267 ~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 267 DDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 99998888877665555555554444
No 483
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.94 E-value=6.7e+02 Score=27.51 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=56.7
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 366 EAGRVWNEM-IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 366 ~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
+..+++... .+.|+..+..+...++... .|++..|...++.+...+- ..+...+...+..........++.++.
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~---~It~~~V~~~l~~~~~~~if~Li~al~ 253 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGT---PVTRKQVEEALGLPPQERLRGIAAALA 253 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 333444333 3456666666665555443 4788888888877655421 233333333333334444555566664
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC
Q 036072 445 NRRRMDIVYDLLKEMEERGCPPD 467 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p~ 467 (631)
.++.++|+.+++++...|..|.
T Consensus 254 -~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 254 -QGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 4789999999999998886544
No 484
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.79 E-value=7.4e+02 Score=27.17 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~ 312 (631)
......++.++ ..++.++|+.+++.+...|..|
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 33344455555 4578888888888888887544
No 485
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=25.45 E-value=8.7e+02 Score=27.30 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=19.7
Q ss_pred HHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHh
Q 036072 201 VLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA 235 (631)
Q Consensus 201 ~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~ 235 (631)
.+.+.|..++++.+..++...+...+.|+.+++.+
T Consensus 190 il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL 224 (605)
T PRK05896 190 IAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQL 224 (605)
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33445666666666666655555445566655544
No 486
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.41 E-value=1e+03 Score=26.91 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHH
Q 036072 375 IDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454 (631)
Q Consensus 375 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (631)
.+.|+..+......++.. ..|+...++.+++++...|- ...+...+-..+...+......++.++.. |+...+++
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~--~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~ 271 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGS--GQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVE 271 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 345776666666666553 34778888887776554431 12233333333333344444555555555 68889999
Q ss_pred HHHHHHHcCCCCC
Q 036072 455 LLKEMEERGCPPD 467 (631)
Q Consensus 455 l~~~m~~~g~~p~ 467 (631)
++++|.+.|..+.
T Consensus 272 ~l~~l~~~G~~~~ 284 (618)
T PRK14951 272 TADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHcCCCHH
Confidence 9999988887654
No 487
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=25.35 E-value=6.7e+02 Score=24.75 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNM 508 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 508 (631)
...-.....+.....+..+|.++|..+-+.| .......|-..|.. ..+..+|..+|++..+.|..+...+...
T Consensus 77 ~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~ 153 (292)
T COG0790 77 ALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYR 153 (292)
T ss_pred HHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHH
Q ss_pred HHHHHHHc-----CCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036072 509 IMKSYFQT-----GNYE--MGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYN 577 (631)
Q Consensus 509 Li~~~~~~-----g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~ 577 (631)
+...|... -..+ .|...|.++...+ +......+...|.. ..+.++|...|+...+.|- .....
T Consensus 154 l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~ 227 (292)
T COG0790 154 LGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACY 227 (292)
T ss_pred HHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHH
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhhhhccCcCC
Q 036072 578 KFAADLSRAG---------------RSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRIE 629 (631)
Q Consensus 578 ~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~~~~~~l~~~~~~~k~~~~~~~~~~ 629 (631)
.+. .+...| +...|..++......|.......+. +...............
T Consensus 228 ~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 292 (292)
T COG0790 228 NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR-ALKIGLSARGSGRRLA 292 (292)
T ss_pred HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH-HHHHHhhCcCCCcCCC
No 488
>PRK10941 hypothetical protein; Provisional
Probab=25.33 E-value=6.8e+02 Score=24.84 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=25.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..-++..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3344455555555555555555432 223333444444455555555555444443
No 489
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.26 E-value=5.9e+02 Score=24.48 Aligned_cols=53 Identities=15% Similarity=-0.004 Sum_probs=22.9
Q ss_pred HHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHH----HHHhcCCHHHHHHHHHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLG----GWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~----~~~~~g~~~~A~~l~~~ 373 (631)
|......|+.+.|.+..+.+.. -+..|...+..|.. -..+.|..++|++..+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444555555555555555432 12223322222211 12344555555555544
No 490
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.24 E-value=7.7e+02 Score=27.58 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHH
Q 036072 200 AVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234 (631)
Q Consensus 200 ~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~ 234 (631)
..+.+.|+.++.+.+..+.+..+.+-+.|+..++.
T Consensus 189 ~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 189 YIADQEGISISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33445566666666666655555444445555443
No 491
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.21 E-value=5.5e+02 Score=28.98 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=19.7
Q ss_pred HHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHH
Q 036072 201 VLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234 (631)
Q Consensus 201 ~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~ 234 (631)
.+.+.|+.++.+.+..+....+.+-+.|+..++.
T Consensus 192 ia~~egi~i~~~al~~La~~s~gdlr~al~~Lek 225 (614)
T PRK14971 192 VASKEGITAEPEALNVIAQKADGGMRDALSIFDQ 225 (614)
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3345566777766666666655554555555543
No 492
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=24.88 E-value=7.7e+02 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhCCCCc
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~ 312 (631)
...++.+. ..++..+|+.+++.+.+.|..+
T Consensus 249 i~~l~~al-~~~d~~~al~~l~~l~~~g~d~ 278 (559)
T PRK05563 249 LDDLVDAI-VEGDVAKALKILEELLDEGKDP 278 (559)
T ss_pred HHHHHHHH-HccCHHHHHHHHHHHHHcCCCH
Confidence 33444443 3356677777777776666444
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.77 E-value=3.7e+02 Score=21.54 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 300 ~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
++|+.....|+..|..+|..+++.+.-+=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666777776666666555555666666666643
No 494
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.67 E-value=5.4e+02 Score=26.25 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMI 375 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~ 375 (631)
+.|+..+|.++|+++.
T Consensus 287 klGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLM 302 (556)
T ss_pred HhhhHHHHHHHHHHHh
Confidence 3444555555444443
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=24.58 E-value=8.7e+02 Score=25.85 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHCCCCCHHHHH---HHHHHHHHccCHH--
Q 036072 228 AFRFFCWAGDKPG-FAHNSRTYNSMMSILGRARQFE-----TMVSMLEEMGEKGLLSMETFK---IAMNAFAAAKERK-- 296 (631)
Q Consensus 228 A~~~f~~~~~~~g-~~p~~~~y~~li~~~~~~g~~~-----~A~~l~~~m~~~g~~~~~~~~---~li~~~~~~g~~~-- 296 (631)
.+++.+.+..... -.|-+.-..++|..||+.++.+ .-+.+++-+....++....|| ++..-|.-.+...
T Consensus 74 C~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg 153 (669)
T KOG3636|consen 74 CRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKG 153 (669)
T ss_pred HHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCC
Confidence 5555555543222 1222445778888898887654 244556666655665444443 3344444332222
Q ss_pred HHHHHHHHHHh------------CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 297 KAVAIFELMNK------------YKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 297 ~A~~v~~~m~~------------~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
....+|+.+++ ..+.||..+.|.+...++..-..+-...+++-..+
T Consensus 154 ~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q 211 (669)
T KOG3636|consen 154 QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ 211 (669)
T ss_pred ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22334444433 23456666666555555555555555555554443
No 496
>PRK09857 putative transposase; Provisional
Probab=24.55 E-value=4.4e+02 Score=26.48 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 578 KFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 578 ~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
++..-+.+.|.-+++.++.++|...|.
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444444444444555666666666553
No 497
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.51 E-value=6.6e+02 Score=24.46 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~ 312 (631)
|.+.....++..| ..+++++|.+++..+-+.|+.|
T Consensus 237 PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCH
Confidence 3444444444443 2345666666666666666544
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.38 E-value=4e+02 Score=23.50 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 036072 458 EMEERGCPPDGLTYNALIKLMKIQ-KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519 (631)
Q Consensus 458 ~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 519 (631)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566665543 33344444443 35667777777777776666666666666666666643
No 499
>PRK09857 putative transposase; Provisional
Probab=24.20 E-value=5.7e+02 Score=25.73 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCc
Q 036072 397 GKRSDAIKLFEVMKAKGPSPN 417 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~ 417 (631)
|.-+++.++...|...|+..+
T Consensus 254 G~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 254 GEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHcCCCHH
Confidence 333445555555555555543
No 500
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.01 E-value=1.1e+03 Score=27.00 Aligned_cols=116 Identities=14% Similarity=0.265 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH----------H
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL----------T 470 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t 470 (631)
+-...+.+|...--.|++.+ +.+...++-.|....+++...++.+.++.- ||.. .
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~------------~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~ 245 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLH------------PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFH 245 (1226)
T ss_pred HHHHHHHHHHhhcCCccccC------------HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEE
Confidence 34455666766544455433 233344566666777788888888777664 3322 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHH-----HH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRS--GFKPTIHT-----YN--MIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t-----~~--~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
|...++---+-|+-++|+.+.-.|.+. .+.||... |. .+-..|...+..+.|.+.|++.-+
T Consensus 246 YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 246 YAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred eeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 222233223456677777777666653 23454322 11 111223334455667777776654
Done!