Query 036072
Match_columns 631
No_of_seqs 671 out of 2833
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:26:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-28 3.5E-33 274.9 44.4 385 210-604 116-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-29 1.1E-33 278.9 37.2 382 213-604 86-547 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.2E-29 1.4E-33 270.3 25.7 213 368-586 10-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 7.3E-29 2.5E-33 268.4 25.4 205 332-551 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.1E-22 1.1E-26 210.3 46.9 368 226-618 16-383 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2E-21 6.8E-26 204.1 44.6 338 226-587 50-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.2E-20 1.8E-24 196.9 40.2 333 244-599 25-406 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.5E-19 1.2E-23 190.4 37.4 317 264-603 11-359 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.4E-19 1.8E-23 192.0 35.3 354 226-604 23-480 (514)
10 3ieg_A DNAJ homolog subfamily 99.8 4.9E-17 1.7E-21 167.3 41.7 302 244-566 2-334 (359)
11 2gw1_A Mitochondrial precursor 99.8 1.5E-17 5.2E-22 180.5 34.7 338 245-604 6-446 (514)
12 3ieg_A DNAJ homolog subfamily 99.8 2.6E-16 8.9E-21 161.9 41.6 302 279-603 3-336 (359)
13 3fp2_A TPR repeat-containing p 99.8 8.8E-17 3E-21 175.7 39.4 356 226-604 42-493 (537)
14 3hym_B Cell division cycle pro 99.8 1.6E-16 5.6E-21 161.6 31.6 287 242-548 19-314 (330)
15 3hym_B Cell division cycle pro 99.8 5.2E-16 1.8E-20 157.9 31.3 291 278-589 21-321 (330)
16 1fch_A Peroxisomal targeting s 99.7 2.4E-16 8.3E-21 163.4 26.6 302 291-598 37-355 (368)
17 1fch_A Peroxisomal targeting s 99.7 6.6E-16 2.3E-20 160.1 25.8 289 258-564 38-356 (368)
18 4eqf_A PEX5-related protein; a 99.7 3.4E-16 1.2E-20 162.5 22.0 277 313-598 64-352 (365)
19 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.7E-22 185.4 11.4 150 433-587 127-286 (1134)
20 3fp2_A TPR repeat-containing p 99.7 6.7E-15 2.3E-19 160.7 32.8 338 245-601 25-406 (537)
21 4eqf_A PEX5-related protein; a 99.7 1.4E-15 4.9E-20 157.7 25.8 235 244-496 64-309 (365)
22 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.5E-22 183.4 11.3 127 466-592 125-255 (1134)
23 3cv0_A Peroxisome targeting si 99.7 6E-15 2E-19 149.8 27.7 265 245-563 21-311 (327)
24 2xm6_A Protein corresponding t 99.7 1.8E-12 6E-17 140.5 48.5 334 226-603 60-433 (490)
25 3cv0_A Peroxisome targeting si 99.7 1.2E-14 4.1E-19 147.5 28.9 276 316-598 23-311 (327)
26 2xm6_A Protein corresponding t 99.7 1E-11 3.4E-16 134.5 48.7 321 244-604 38-398 (490)
27 3mkr_A Coatomer subunit epsilo 99.7 4E-14 1.4E-18 142.4 27.4 250 288-567 8-264 (291)
28 2ooe_A Cleavage stimulation fa 99.6 3.6E-12 1.2E-16 139.5 42.1 353 244-604 12-456 (530)
29 3mkr_A Coatomer subunit epsilo 99.6 1.4E-13 4.8E-18 138.4 27.1 254 322-603 7-265 (291)
30 1b89_A Protein (clathrin heavy 99.6 2.9E-15 1E-19 155.3 14.6 221 246-515 33-253 (449)
31 1b89_A Protein (clathrin heavy 99.6 6.4E-15 2.2E-19 152.8 15.2 323 227-611 50-394 (449)
32 4g1t_A Interferon-induced prot 99.6 2.7E-12 9.4E-17 137.7 32.2 341 245-604 51-461 (472)
33 2ooe_A Cleavage stimulation fa 99.6 1E-10 3.4E-15 127.9 43.9 352 227-601 64-491 (530)
34 3uq3_A Heat shock protein STI1 99.5 2.1E-12 7.1E-17 126.0 25.6 221 281-530 7-234 (258)
35 3uq3_A Heat shock protein STI1 99.5 3.5E-12 1.2E-16 124.4 26.4 225 314-566 5-235 (258)
36 2pl2_A Hypothetical conserved 99.5 2.2E-12 7.4E-17 123.7 22.4 200 242-460 2-212 (217)
37 1ouv_A Conserved hypothetical 99.5 1.3E-10 4.5E-15 115.0 33.7 225 347-604 5-253 (273)
38 2pl2_A Hypothetical conserved 99.5 6.6E-12 2.3E-16 120.2 22.9 159 436-599 42-211 (217)
39 2ho1_A Type 4 fimbrial biogene 99.5 3.1E-11 1.1E-15 117.6 28.1 199 316-531 39-237 (252)
40 1xi4_A Clathrin heavy chain; a 99.5 8.6E-10 2.9E-14 127.1 43.6 258 286-585 1056-1326(1630)
41 1ouv_A Conserved hypothetical 99.5 1.3E-10 4.3E-15 115.1 32.3 224 313-568 5-252 (273)
42 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-11 1.3E-15 116.9 28.0 200 245-462 37-238 (252)
43 3u4t_A TPR repeat-containing p 99.5 2E-11 6.9E-16 120.3 25.9 233 317-567 6-250 (272)
44 2vq2_A PILW, putative fimbrial 99.4 5.3E-11 1.8E-15 113.3 27.5 127 439-566 82-210 (225)
45 4g1t_A Interferon-induced prot 99.4 5.3E-11 1.8E-15 127.6 30.1 321 244-568 93-460 (472)
46 2vq2_A PILW, putative fimbrial 99.4 7.3E-11 2.5E-15 112.3 27.5 165 245-411 8-175 (225)
47 2h6f_A Protein farnesyltransfe 99.4 3.2E-11 1.1E-15 125.7 26.6 248 245-513 97-363 (382)
48 2q7f_A YRRB protein; TPR, prot 99.4 1E-11 3.5E-16 120.1 21.3 166 244-411 22-187 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.1E-12 1.4E-16 125.4 18.6 151 258-411 18-172 (275)
50 3u4t_A TPR repeat-containing p 99.4 3E-11 1E-15 119.1 24.2 245 250-546 8-263 (272)
51 1xi4_A Clathrin heavy chain; a 99.4 2.1E-09 7.3E-14 123.9 42.1 288 251-594 1055-1376(1630)
52 2q7f_A YRRB protein; TPR, prot 99.4 2E-11 6.7E-16 118.0 22.3 94 317-411 26-119 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.5E-12 1.9E-16 124.5 18.4 247 291-561 17-269 (275)
54 2h6f_A Protein farnesyltransfe 99.4 9.1E-11 3.1E-15 122.2 26.8 249 279-549 97-364 (382)
55 3sf4_A G-protein-signaling mod 99.4 1.8E-11 6.3E-16 127.9 21.8 278 243-531 7-335 (406)
56 4a1s_A PINS, partner of inscut 99.4 2.2E-11 7.6E-16 128.0 22.2 276 245-531 48-371 (411)
57 3ro2_A PINS homolog, G-protein 99.4 2.3E-11 7.7E-16 123.1 21.0 204 246-460 6-250 (338)
58 4a1s_A PINS, partner of inscut 99.4 4E-11 1.4E-15 126.0 22.5 274 281-566 50-371 (411)
59 3ro2_A PINS homolog, G-protein 99.4 2.4E-11 8.2E-16 122.9 19.1 274 281-566 7-331 (338)
60 3sf4_A G-protein-signaling mod 99.3 7.4E-11 2.5E-15 123.2 22.3 278 313-601 8-335 (406)
61 2ond_A Cleavage stimulation fa 99.3 2.1E-09 7.2E-14 108.6 29.6 183 331-532 81-270 (308)
62 3vtx_A MAMA; tetratricopeptide 99.3 7.5E-10 2.6E-14 102.3 23.1 171 244-418 4-174 (184)
63 3e4b_A ALGK; tetratricopeptide 99.3 5.6E-10 1.9E-14 119.4 25.1 340 227-607 21-392 (452)
64 2ond_A Cleavage stimulation fa 99.3 4.5E-09 1.5E-13 106.1 29.6 219 331-567 33-270 (308)
65 3nf1_A KLC 1, kinesin light ch 99.3 6.1E-11 2.1E-15 119.0 15.1 240 347-601 26-306 (311)
66 3nf1_A KLC 1, kinesin light ch 99.2 6.3E-11 2.2E-15 118.9 14.7 132 316-461 71-223 (311)
67 3ulq_A Response regulator aspa 99.2 7.6E-10 2.6E-14 115.4 23.3 234 354-601 109-367 (383)
68 3vtx_A MAMA; tetratricopeptide 99.2 2.7E-09 9.2E-14 98.5 23.8 168 432-603 4-171 (184)
69 3ulq_A Response regulator aspa 99.2 9.3E-10 3.2E-14 114.8 22.7 296 255-566 22-367 (383)
70 4abn_A Tetratricopeptide repea 99.2 4.8E-10 1.6E-14 120.7 20.4 214 295-528 84-317 (474)
71 3e4b_A ALGK; tetratricopeptide 99.2 9.7E-10 3.3E-14 117.5 22.7 316 251-605 9-354 (452)
72 4abn_A Tetratricopeptide repea 99.2 6.9E-10 2.4E-14 119.4 20.5 158 436-597 140-316 (474)
73 3as5_A MAMA; tetratricopeptide 99.2 2.5E-09 8.6E-14 97.9 20.2 166 245-412 8-173 (186)
74 4e6h_A MRNA 3'-END-processing 99.2 2E-07 6.7E-12 103.7 38.9 168 432-602 342-533 (679)
75 1hz4_A MALT regulatory protein 99.2 1.7E-08 5.7E-13 104.6 28.5 270 287-567 22-322 (373)
76 1hz4_A MALT regulatory protein 99.1 2.7E-08 9.2E-13 103.0 28.3 275 248-532 17-322 (373)
77 3q15_A PSP28, response regulat 99.1 7.4E-09 2.5E-13 107.7 23.6 235 352-601 105-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.1 7.4E-09 2.5E-13 94.7 20.9 164 434-601 9-172 (186)
79 3q15_A PSP28, response regulat 99.1 1.7E-08 5.7E-13 105.0 25.7 311 242-566 7-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.0 1E-08 3.5E-13 115.3 21.0 165 245-411 9-173 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.0 1.3E-08 4.6E-13 114.3 22.0 166 432-601 8-173 (723)
82 3edt_B KLC 2, kinesin light ch 99.0 6.6E-09 2.3E-13 102.2 16.5 205 383-602 43-281 (283)
83 3edt_B KLC 2, kinesin light ch 99.0 5.5E-09 1.9E-13 102.7 15.2 135 313-461 42-197 (283)
84 4i17_A Hypothetical protein; T 99.0 7.1E-08 2.4E-12 92.3 21.7 168 432-603 6-210 (228)
85 4i17_A Hypothetical protein; T 99.0 7.1E-08 2.4E-12 92.3 21.3 154 243-399 5-169 (228)
86 2fo7_A Synthetic consensus TPR 98.9 5.4E-08 1.8E-12 83.5 17.6 129 247-376 3-131 (136)
87 1qqe_A Vesicular transport pro 98.9 6.6E-08 2.2E-12 96.7 18.9 211 363-601 32-268 (292)
88 4e6h_A MRNA 3'-END-processing 98.9 7.1E-06 2.4E-10 91.2 36.1 364 229-602 53-499 (679)
89 2fo7_A Synthetic consensus TPR 98.8 1.6E-07 5.3E-12 80.5 17.4 131 280-412 2-132 (136)
90 3mv2_B Coatomer subunit epsilo 98.8 8.1E-07 2.8E-11 88.2 24.6 181 367-568 85-283 (310)
91 3qky_A Outer membrane assembly 98.7 4.3E-07 1.5E-11 88.8 19.1 169 244-412 14-224 (261)
92 3qky_A Outer membrane assembly 98.7 1.4E-06 4.9E-11 85.0 22.4 101 312-412 13-126 (261)
93 3urz_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 85.8 17.4 172 245-421 4-193 (208)
94 1qqe_A Vesicular transport pro 98.7 5.1E-07 1.7E-11 90.2 19.0 166 246-411 38-227 (292)
95 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.7E-06 5.7E-11 82.7 19.6 168 245-414 4-215 (225)
96 3rjv_A Putative SEL1 repeat pr 98.6 3.5E-06 1.2E-10 79.7 21.4 173 432-613 17-208 (212)
97 3mv2_B Coatomer subunit epsilo 98.6 2.7E-06 9.3E-11 84.4 20.9 191 214-413 73-283 (310)
98 2r5s_A Uncharacterized protein 98.6 3.5E-07 1.2E-11 83.8 13.6 163 247-411 8-172 (176)
99 2pzi_A Probable serine/threoni 98.6 3.4E-07 1.2E-11 102.9 16.1 157 256-417 402-566 (681)
100 2uy1_A Cleavage stimulation fa 98.6 0.0001 3.4E-09 79.2 34.4 364 210-600 14-411 (493)
101 2vsy_A XCC0866; transferase, g 98.6 1.2E-06 4.2E-11 96.2 19.2 132 245-377 23-157 (568)
102 3dra_A Protein farnesyltransfe 98.6 3.7E-05 1.3E-09 76.8 27.9 217 296-531 50-286 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 98.6 5.3E-06 1.8E-10 79.2 20.5 170 434-605 5-216 (225)
104 3rjv_A Putative SEL1 repeat pr 98.6 6.2E-06 2.1E-10 78.0 20.7 176 366-568 4-198 (212)
105 3qou_A Protein YBBN; thioredox 98.5 1.3E-06 4.5E-11 87.0 16.1 166 244-411 116-283 (287)
106 3urz_A Uncharacterized protein 98.5 2.7E-06 9.4E-11 80.1 17.6 57 354-411 60-116 (208)
107 3dra_A Protein farnesyltransfe 98.5 3.7E-05 1.3E-09 76.8 26.5 220 259-496 47-286 (306)
108 2vsy_A XCC0866; transferase, g 98.5 2.6E-06 8.9E-11 93.6 19.8 154 447-604 3-159 (568)
109 2pzi_A Probable serine/threoni 98.5 1.2E-06 4.1E-11 98.4 17.1 173 359-553 402-583 (681)
110 4ga2_A E3 SUMO-protein ligase 98.5 4.9E-07 1.7E-11 80.5 11.1 145 439-588 3-149 (150)
111 2qfc_A PLCR protein; TPR, HTH, 98.5 2.2E-05 7.5E-10 78.1 24.2 200 207-411 42-265 (293)
112 2r5s_A Uncharacterized protein 98.5 1.8E-06 6.2E-11 78.9 14.9 57 320-376 12-68 (176)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 4.1E-06 1.4E-10 84.2 18.2 203 292-530 4-222 (307)
114 3u3w_A Transcriptional activat 98.5 1.1E-05 3.7E-10 80.4 21.0 162 439-600 81-264 (293)
115 2uy1_A Cleavage stimulation fa 98.5 0.00043 1.5E-08 74.3 34.8 322 246-599 16-380 (493)
116 3qou_A Protein YBBN; thioredox 98.5 5.8E-06 2E-10 82.2 18.5 168 277-460 115-282 (287)
117 3u3w_A Transcriptional activat 98.5 2.6E-05 8.9E-10 77.6 23.1 198 206-411 41-265 (293)
118 4ga2_A E3 SUMO-protein ligase 98.5 5E-07 1.7E-11 80.5 9.3 139 257-397 9-148 (150)
119 2qfc_A PLCR protein; TPR, HTH, 98.5 2.2E-05 7.6E-10 78.1 22.3 184 435-618 77-286 (293)
120 2ifu_A Gamma-SNAP; membrane fu 98.4 5.4E-06 1.9E-10 83.3 17.5 231 327-595 4-254 (307)
121 1a17_A Serine/threonine protei 98.4 7.1E-06 2.4E-10 73.3 16.3 96 246-342 14-109 (166)
122 1na0_A Designed protein CTPR3; 98.4 9.4E-06 3.2E-10 68.2 15.5 110 245-355 9-118 (125)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.5E-05 8.5E-10 73.2 19.6 130 434-568 7-151 (213)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.2E-05 7.5E-10 73.6 18.3 125 284-412 11-150 (213)
125 1a17_A Serine/threonine protei 98.3 1.9E-05 6.6E-10 70.4 16.7 130 280-411 14-145 (166)
126 2lni_A Stress-induced-phosphop 98.3 9.8E-06 3.3E-10 69.2 14.1 116 244-360 15-130 (133)
127 2vyi_A SGTA protein; chaperone 98.3 1.1E-05 3.8E-10 68.4 14.3 116 246-362 13-128 (131)
128 2e2e_A Formate-dependent nitri 98.3 5.4E-06 1.8E-10 75.5 12.1 121 256-377 21-144 (177)
129 3q7a_A Farnesyltransferase alp 98.3 0.00035 1.2E-08 70.6 26.3 154 257-412 66-237 (349)
130 1na0_A Designed protein CTPR3; 98.3 3E-05 1E-09 65.0 15.9 97 280-377 10-106 (125)
131 3q7a_A Farnesyltransferase alp 98.3 0.0004 1.4E-08 70.2 26.4 173 293-484 68-258 (349)
132 4gco_A Protein STI-1; structur 98.3 2E-05 7E-10 67.5 14.4 96 247-343 15-110 (126)
133 3gw4_A Uncharacterized protein 98.3 1.1E-05 3.8E-10 74.7 13.7 157 444-601 3-175 (203)
134 2vyi_A SGTA protein; chaperone 98.2 3.1E-05 1.1E-09 65.5 15.4 117 469-588 13-129 (131)
135 2c2l_A CHIP, carboxy terminus 98.2 8.3E-06 2.8E-10 80.9 12.4 98 244-342 3-100 (281)
136 3gw4_A Uncharacterized protein 98.2 1.6E-05 5.3E-10 73.8 13.6 156 256-411 3-175 (203)
137 4gco_A Protein STI-1; structur 98.2 4.8E-05 1.6E-09 65.2 15.6 95 471-567 16-110 (126)
138 2lni_A Stress-induced-phosphop 98.2 4.2E-05 1.4E-09 65.1 14.5 118 278-397 15-132 (133)
139 1p5q_A FKBP52, FK506-binding p 98.1 3E-05 1E-09 79.0 15.1 130 245-375 147-292 (336)
140 2vgx_A Chaperone SYCD; alterna 98.1 2.5E-05 8.7E-10 69.1 12.7 96 504-601 22-117 (148)
141 3gyz_A Chaperone protein IPGC; 98.1 2.6E-05 8.8E-10 69.4 12.7 96 281-377 38-133 (151)
142 1elw_A TPR1-domain of HOP; HOP 98.1 7.4E-05 2.5E-09 61.8 15.0 106 245-351 4-109 (118)
143 2vgx_A Chaperone SYCD; alterna 98.1 9.9E-06 3.4E-10 71.8 9.9 93 318-411 25-117 (148)
144 1p5q_A FKBP52, FK506-binding p 98.1 6.7E-05 2.3E-09 76.3 17.3 122 434-557 148-283 (336)
145 2e2e_A Formate-dependent nitri 98.1 3.3E-05 1.1E-09 70.1 13.1 122 290-413 21-145 (177)
146 3upv_A Heat shock protein STI1 98.1 7.2E-05 2.5E-09 63.6 13.9 95 246-341 5-99 (126)
147 4f3v_A ESX-1 secretion system 98.1 0.00014 4.9E-09 71.1 17.6 191 257-462 18-237 (282)
148 2fbn_A 70 kDa peptidylprolyl i 98.1 6E-06 2E-10 76.9 7.4 131 280-411 39-185 (198)
149 3gyz_A Chaperone protein IPGC; 98.1 5.3E-05 1.8E-09 67.3 13.1 98 245-343 36-133 (151)
150 1elw_A TPR1-domain of HOP; HOP 98.0 0.00023 7.8E-09 58.8 16.2 96 470-567 6-101 (118)
151 2c2l_A CHIP, carboxy terminus 98.0 1.9E-05 6.4E-10 78.3 10.8 97 314-411 4-100 (281)
152 2xcb_A PCRH, regulatory protei 98.0 5.5E-05 1.9E-09 66.1 12.6 97 246-343 19-115 (142)
153 4f3v_A ESX-1 secretion system 98.0 0.00019 6.3E-09 70.3 17.3 185 326-532 18-237 (282)
154 3sz7_A HSC70 cochaperone (SGT) 98.0 9.7E-05 3.3E-09 66.2 14.3 99 467-567 10-108 (164)
155 2xcb_A PCRH, regulatory protei 98.0 0.00017 5.9E-09 62.8 15.3 92 473-566 23-114 (142)
156 3q49_B STIP1 homology and U bo 98.0 9E-05 3.1E-09 63.8 13.3 97 244-341 8-104 (137)
157 2fbn_A 70 kDa peptidylprolyl i 98.0 7.1E-05 2.4E-09 69.5 13.4 132 245-377 38-186 (198)
158 4b4t_Q 26S proteasome regulato 98.0 0.00067 2.3E-08 71.0 22.1 170 386-566 58-244 (434)
159 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00012 4.1E-09 65.5 14.0 98 245-343 11-108 (164)
160 2kck_A TPR repeat; tetratricop 98.0 7.9E-05 2.7E-09 61.1 11.8 99 245-344 6-107 (112)
161 3upv_A Heat shock protein STI1 97.9 0.00026 8.9E-09 60.0 15.0 96 281-377 6-101 (126)
162 1elr_A TPR2A-domain of HOP; HO 97.9 0.00011 3.6E-09 62.2 12.0 95 282-377 7-108 (131)
163 2dba_A Smooth muscle cell asso 97.9 0.00022 7.6E-09 61.9 14.3 107 244-351 27-136 (148)
164 1elr_A TPR2A-domain of HOP; HO 97.9 0.00013 4.3E-09 61.7 12.0 112 245-357 4-121 (131)
165 2dba_A Smooth muscle cell asso 97.9 0.00049 1.7E-08 59.6 16.0 98 467-567 27-128 (148)
166 4gcn_A Protein STI-1; structur 97.9 0.00032 1.1E-08 60.0 14.0 95 471-566 11-111 (127)
167 3q49_B STIP1 homology and U bo 97.8 0.00028 9.6E-09 60.5 13.5 98 313-411 8-105 (137)
168 2kck_A TPR repeat; tetratricop 97.8 0.00015 5.1E-09 59.4 11.3 98 314-412 6-106 (112)
169 4b4t_Q 26S proteasome regulato 97.8 0.0011 3.9E-08 69.2 20.3 199 252-461 11-244 (434)
170 3ro3_A PINS homolog, G-protein 97.8 0.00013 4.6E-09 64.0 11.0 96 435-530 11-116 (164)
171 3ro3_A PINS homolog, G-protein 97.8 0.00016 5.4E-09 63.5 11.3 133 469-601 10-157 (164)
172 2xev_A YBGF; tetratricopeptide 97.8 0.00058 2E-08 57.8 14.4 92 251-343 8-105 (129)
173 4gcn_A Protein STI-1; structur 97.7 0.00026 8.9E-09 60.5 11.6 96 317-412 11-112 (127)
174 3dss_A Geranylgeranyl transfer 97.7 0.017 5.8E-07 57.9 26.1 149 330-496 90-266 (331)
175 1hxi_A PEX5, peroxisome target 97.7 0.00028 9.7E-09 59.7 10.9 93 249-342 21-113 (121)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0004 1.4E-08 73.8 14.2 123 245-368 268-405 (457)
177 3dss_A Geranylgeranyl transfer 97.6 0.063 2.2E-06 53.7 30.1 232 257-497 41-304 (331)
178 1wao_1 Serine/threonine protei 97.6 0.00013 4.4E-09 78.1 10.0 120 252-372 13-134 (477)
179 1wao_1 Serine/threonine protei 97.6 0.0004 1.4E-08 74.3 13.8 121 439-562 12-134 (477)
180 1hxi_A PEX5, peroxisome target 97.6 0.00034 1.2E-08 59.2 10.7 91 320-411 23-113 (121)
181 3rkv_A Putative peptidylprolyl 97.6 0.00086 2.9E-08 59.7 13.9 98 469-567 12-126 (162)
182 1ihg_A Cyclophilin 40; ppiase 97.6 0.00051 1.7E-08 70.8 13.2 138 246-403 224-361 (370)
183 2xev_A YBGF; tetratricopeptide 97.6 0.0015 5.1E-08 55.2 14.0 93 284-377 7-105 (129)
184 1ihg_A Cyclophilin 40; ppiase 97.6 0.00087 3E-08 69.0 14.5 91 502-594 272-362 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00099 3.4E-08 70.7 15.3 124 432-557 267-404 (457)
186 3k9i_A BH0479 protein; putativ 97.5 0.00023 7.9E-09 59.7 7.8 86 481-567 3-90 (117)
187 3k9i_A BH0479 protein; putativ 97.5 0.00021 7.4E-09 59.9 7.2 86 292-377 3-90 (117)
188 3rkv_A Putative peptidylprolyl 97.5 0.00072 2.5E-08 60.2 10.8 96 245-341 11-124 (162)
189 1klx_A Cysteine rich protein B 97.4 0.0022 7.6E-08 55.6 12.8 111 447-568 9-127 (138)
190 1klx_A Cysteine rich protein B 97.4 0.0037 1.3E-07 54.1 14.1 113 482-605 9-129 (138)
191 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0007 2.4E-08 68.8 9.4 147 246-412 180-328 (338)
192 2l6j_A TPR repeat-containing p 97.3 0.00036 1.2E-08 57.3 5.8 93 244-337 3-101 (111)
193 3n71_A Histone lysine methyltr 97.2 0.0011 3.6E-08 70.8 10.6 124 478-601 319-463 (490)
194 1dce_A Protein (RAB geranylger 97.2 0.016 5.6E-07 63.0 20.2 174 398-591 44-244 (567)
195 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0012 4.1E-08 67.1 10.0 144 436-600 182-326 (338)
196 3n71_A Histone lysine methyltr 97.1 0.0017 5.7E-08 69.3 10.9 128 440-567 316-464 (490)
197 2hr2_A Hypothetical protein; a 97.1 0.0067 2.3E-07 53.6 12.9 96 506-601 14-130 (159)
198 1dce_A Protein (RAB geranylger 97.1 0.034 1.1E-06 60.5 21.2 173 258-448 42-241 (567)
199 2l6j_A TPR repeat-containing p 97.1 0.00038 1.3E-08 57.1 4.5 64 503-567 4-67 (111)
200 2hr2_A Hypothetical protein; a 97.1 0.0072 2.5E-07 53.4 12.7 96 471-566 14-130 (159)
201 2kat_A Uncharacterized protein 97.0 0.0036 1.2E-07 51.8 9.7 74 265-339 5-78 (115)
202 2kat_A Uncharacterized protein 96.9 0.0044 1.5E-07 51.3 9.6 80 297-377 3-82 (115)
203 1na3_A Designed protein CTPR2; 96.9 0.0074 2.5E-07 47.0 10.4 77 246-323 10-86 (91)
204 1na3_A Designed protein CTPR2; 96.8 0.012 4E-07 45.8 10.9 78 316-394 11-88 (91)
205 3mkq_A Coatomer beta'-subunit; 96.7 0.03 1E-06 63.6 17.7 70 446-530 665-734 (814)
206 3mkq_A Coatomer beta'-subunit; 96.7 0.03 1E-06 63.6 17.6 155 438-622 634-797 (814)
207 1zu2_A Mitochondrial import re 96.6 0.0063 2.2E-07 53.7 8.0 97 481-581 15-132 (158)
208 3ma5_A Tetratricopeptide repea 96.4 0.014 4.9E-07 47.0 8.6 64 313-376 6-69 (100)
209 1zu2_A Mitochondrial import re 96.3 0.0087 3E-07 52.8 7.3 109 256-391 13-132 (158)
210 3ma5_A Tetratricopeptide repea 96.2 0.022 7.6E-07 45.8 8.7 64 244-307 6-69 (100)
211 3ly7_A Transcriptional activat 95.8 0.18 6.3E-06 50.8 15.0 151 243-422 192-347 (372)
212 3qww_A SET and MYND domain-con 95.6 0.051 1.7E-06 56.8 10.7 86 481-566 311-410 (433)
213 3qwp_A SET and MYND domain-con 95.6 0.057 2E-06 56.4 11.1 92 475-566 294-399 (429)
214 3qww_A SET and MYND domain-con 95.5 0.065 2.2E-06 56.0 11.0 87 515-601 310-410 (433)
215 3qwp_A SET and MYND domain-con 95.4 0.069 2.4E-06 55.8 11.1 92 510-601 294-399 (429)
216 2kc7_A BFR218_protein; tetratr 95.4 0.025 8.6E-07 44.9 6.0 58 252-309 7-65 (99)
217 1wy6_A Hypothetical protein ST 95.2 1.2 4.2E-05 37.5 15.4 138 361-535 20-157 (172)
218 3ly7_A Transcriptional activat 94.7 0.52 1.8E-05 47.5 14.3 73 311-386 274-346 (372)
219 2kc7_A BFR218_protein; tetratr 94.4 0.23 7.9E-06 39.0 9.4 65 286-351 7-72 (99)
220 3mkq_B Coatomer subunit alpha; 94.2 1.1 3.9E-05 39.9 13.9 130 441-600 13-142 (177)
221 1wy6_A Hypothetical protein ST 94.1 2.3 7.9E-05 35.9 15.8 68 347-415 90-157 (172)
222 3mkq_B Coatomer subunit alpha; 94.0 2 6.9E-05 38.2 15.2 97 291-407 17-113 (177)
223 3bee_A Putative YFRE protein; 93.3 0.7 2.4E-05 36.4 10.0 67 243-309 4-73 (93)
224 1pc2_A Mitochondria fission pr 93.1 0.57 2E-05 40.7 9.7 79 486-566 16-99 (152)
225 3bee_A Putative YFRE protein; 92.9 1.1 3.9E-05 35.2 10.6 66 312-377 4-72 (93)
226 2v5f_A Prolyl 4-hydroxylase su 92.8 1 3.6E-05 36.1 10.6 65 244-308 4-75 (104)
227 2v5f_A Prolyl 4-hydroxylase su 92.4 0.86 2.9E-05 36.6 9.6 65 278-342 4-74 (104)
228 4b4t_P 26S proteasome regulato 92.3 12 0.00041 38.9 24.6 168 350-530 139-322 (445)
229 1pc2_A Mitochondria fission pr 91.9 0.88 3E-05 39.5 9.4 23 354-376 77-99 (152)
230 3u64_A Protein TP_0956; tetrat 91.8 1.7 5.9E-05 42.0 12.2 84 485-570 180-272 (301)
231 4h7y_A Dual specificity protei 90.6 3.1 0.00011 35.8 11.2 105 312-417 11-128 (161)
232 3u64_A Protein TP_0956; tetrat 90.5 1.7 5.7E-05 42.1 10.7 91 331-422 180-281 (301)
233 4h7y_A Dual specificity protei 90.3 4.4 0.00015 34.9 11.8 103 467-571 12-127 (161)
234 4gns_B Protein CSD3, chitin bi 90.0 1.6 5.5E-05 48.4 11.5 127 437-564 252-397 (754)
235 3txn_A 26S proteasome regulato 89.3 20 0.0007 36.3 19.2 131 211-341 58-208 (394)
236 1nzn_A CGI-135 protein, fissio 89.0 2.8 9.5E-05 35.0 9.5 85 481-567 14-103 (126)
237 1v54_E Cytochrome C oxidase po 88.9 1.7 5.7E-05 34.5 7.5 61 295-355 26-86 (109)
238 2ff4_A Probable regulatory pro 88.0 1.7 5.8E-05 44.4 9.4 73 246-318 172-249 (388)
239 4gns_B Protein CSD3, chitin bi 87.6 2.7 9.1E-05 46.7 11.1 128 248-375 251-398 (754)
240 4b4t_P 26S proteasome regulato 87.3 29 0.001 35.8 21.3 189 328-531 30-246 (445)
241 2wpv_A GET4, UPF0363 protein Y 87.2 23 0.0008 34.6 17.5 18 548-565 198-215 (312)
242 2ff4_A Probable regulatory pro 86.6 2.4 8.3E-05 43.3 9.6 69 318-386 175-248 (388)
243 1nzn_A CGI-135 protein, fissio 84.5 5.8 0.0002 33.1 9.1 24 353-376 79-102 (126)
244 4fhn_B Nucleoporin NUP120; pro 83.9 33 0.0011 40.3 18.8 61 351-411 902-966 (1139)
245 2y69_E Cytochrome C oxidase su 83.6 4.7 0.00016 33.8 7.9 59 297-355 71-129 (152)
246 4ady_A RPN2, 26S proteasome re 83.6 44 0.0015 38.0 18.4 157 439-601 496-657 (963)
247 3lpz_A GET4 (YOR164C homolog); 80.2 48 0.0016 32.7 22.0 111 247-371 37-159 (336)
248 4fhn_B Nucleoporin NUP120; pro 80.2 53 0.0018 38.5 18.8 226 353-586 817-1079(1139)
249 1qsa_A Protein (soluble lytic 79.9 71 0.0024 34.5 25.7 303 280-602 73-410 (618)
250 1v54_E Cytochrome C oxidase po 79.5 15 0.0005 29.2 9.0 47 486-532 28-74 (109)
251 3o48_A Mitochondria fission 1 78.7 23 0.00078 29.7 10.6 69 499-567 36-107 (134)
252 1zbp_A Hypothetical protein VP 76.2 16 0.00055 34.7 10.2 72 252-323 4-77 (273)
253 2wpv_A GET4, UPF0363 protein Y 75.0 64 0.0022 31.4 20.3 111 247-371 35-157 (312)
254 3o48_A Mitochondria fission 1 74.0 33 0.0011 28.7 10.4 67 466-532 38-107 (134)
255 2y69_E Cytochrome C oxidase su 72.7 24 0.00083 29.6 9.0 60 486-546 71-130 (152)
256 4b4t_R RPN7, 26S proteasome re 72.6 27 0.00092 35.9 12.0 100 350-462 133-237 (429)
257 4ady_A RPN2, 26S proteasome re 72.0 1.4E+02 0.0048 33.9 24.7 21 441-461 568-588 (963)
258 3ffl_A Anaphase-promoting comp 70.8 18 0.00062 31.6 8.4 68 240-307 13-91 (167)
259 2p58_C Putative type III secre 70.2 32 0.0011 27.2 8.7 63 547-615 49-111 (116)
260 4b4t_R RPN7, 26S proteasome re 69.3 39 0.0013 34.7 12.3 95 470-566 133-236 (429)
261 3txn_A 26S proteasome regulato 68.3 1E+02 0.0036 31.0 24.8 172 353-539 104-290 (394)
262 1y8m_A FIS1; mitochondria, unk 68.2 55 0.0019 27.7 13.2 68 500-567 36-106 (144)
263 3ffl_A Anaphase-promoting comp 67.6 24 0.00082 30.8 8.5 130 462-604 12-153 (167)
264 1y8m_A FIS1; mitochondria, unk 66.0 61 0.0021 27.5 12.1 67 466-532 37-106 (144)
265 2uwj_G Type III export protein 65.7 32 0.0011 27.2 7.8 62 547-614 48-109 (115)
266 3eiq_C Programmed cell death p 65.4 1.1E+02 0.0038 30.4 14.1 26 350-375 56-81 (358)
267 1ug3_A EIF4GI, eukaryotic prot 64.3 53 0.0018 32.4 11.7 24 282-305 14-37 (339)
268 3lpz_A GET4 (YOR164C homolog); 60.9 1.3E+02 0.0044 29.5 21.1 74 548-621 197-295 (336)
269 3lvg_A Clathrin heavy chain 1; 59.2 0.12 4.2E-06 53.4 -8.7 101 347-453 198-324 (624)
270 1qsa_A Protein (soluble lytic 58.4 2E+02 0.0069 30.9 33.5 88 237-329 64-151 (618)
271 1wdy_A 2-5A-dependent ribonucl 58.3 8.8 0.0003 36.2 4.6 19 251-269 8-26 (285)
272 2nsz_A Programmed cell death p 58.2 48 0.0016 27.5 8.6 66 505-571 9-76 (129)
273 2nsz_A Programmed cell death p 55.1 89 0.003 25.8 9.9 66 317-382 10-77 (129)
274 1zbp_A Hypothetical protein VP 54.3 1.5E+02 0.005 28.1 13.1 51 360-411 9-59 (273)
275 2wvi_A Mitotic checkpoint seri 51.7 1.2E+02 0.0041 26.3 11.4 54 262-315 77-132 (164)
276 3esl_A Checkpoint serine/threo 50.9 1.3E+02 0.0044 27.1 10.5 56 258-313 92-149 (202)
277 1s6c_A KV4 potassium channel-i 50.5 1.2E+02 0.0041 26.0 11.2 41 331-372 140-180 (183)
278 2ion_A PDCD4, programmed cell 50.5 70 0.0024 27.4 8.5 66 317-382 12-79 (152)
279 2ion_A PDCD4, programmed cell 49.8 45 0.0016 28.6 7.2 70 505-575 11-82 (152)
280 4g8k_A 2-5A-dependent ribonucl 49.6 25 0.00086 34.3 6.5 22 249-270 26-47 (337)
281 3lvg_A Clathrin heavy chain 1; 49.0 2.9 9.9E-05 43.5 -0.7 334 242-596 141-535 (624)
282 2zu6_B Programmed cell death p 48.1 1.6E+02 0.0054 28.5 11.6 181 437-619 7-248 (307)
283 3ltj_A Alpharep-4; protein eng 46.6 1.5E+02 0.0051 25.9 17.5 170 417-603 12-181 (201)
284 4b4t_S RPN3, 26S proteasome re 46.0 41 0.0014 35.3 7.4 64 314-377 231-299 (523)
285 2wvi_A Mitotic checkpoint seri 44.5 1.1E+02 0.0037 26.6 8.7 51 522-572 79-130 (164)
286 3eiq_C Programmed cell death p 41.0 2.8E+02 0.0095 27.4 16.5 80 505-585 219-300 (358)
287 2jul_A Calsenilin; EF-hand, ca 39.8 2.3E+02 0.0077 26.1 11.5 43 331-374 213-255 (256)
288 1s6c_A KV4 potassium channel-i 38.0 1.9E+02 0.0064 24.6 10.4 130 208-339 35-181 (183)
289 4a1g_A Mitotic checkpoint seri 36.8 1.4E+02 0.0049 25.4 8.2 50 522-571 84-134 (152)
290 2p58_C Putative type III secre 36.1 1.6E+02 0.0055 23.3 7.7 13 256-268 51-63 (116)
291 4a1g_A Mitotic checkpoint seri 35.3 2.1E+02 0.0072 24.4 9.9 52 262-313 82-135 (152)
292 1wdy_A 2-5A-dependent ribonucl 34.7 87 0.003 28.9 7.5 120 284-416 7-131 (285)
293 2jul_A Calsenilin; EF-hand, ca 33.6 2.4E+02 0.0082 25.9 10.3 131 208-340 108-255 (256)
294 4b4t_S RPN3, 26S proteasome re 33.2 4.4E+02 0.015 27.5 13.6 64 469-532 232-299 (523)
295 2f6m_A Suppressor protein STP2 33.0 66 0.0023 23.1 4.5 47 247-293 4-50 (65)
296 1k1a_A B-cell lymphoma 3-encod 32.5 98 0.0034 27.8 7.3 153 251-417 12-177 (241)
297 2uwj_G Type III export protein 32.4 1.6E+02 0.0053 23.3 6.8 9 228-236 25-33 (115)
298 1s1e_A KV channel interacting 32.3 2.8E+02 0.0094 24.9 11.0 44 263-306 90-135 (224)
299 4aez_C MAD3, mitotic spindle c 32.3 1.6E+02 0.0056 26.9 8.3 54 556-609 132-186 (223)
300 2p1h_A APAF-1, apoptotic prote 32.1 1.6E+02 0.0054 22.5 7.3 62 264-332 24-85 (94)
301 2d2s_A Exocyst complex compone 31.9 2.6E+02 0.0088 25.8 9.8 91 474-567 24-120 (235)
302 2xig_A Ferric uptake regulatio 31.5 1.9E+02 0.0064 24.4 8.3 61 457-518 16-76 (150)
303 3esl_A Checkpoint serine/threo 31.4 2.9E+02 0.0099 24.8 13.8 55 517-571 93-148 (202)
304 2xig_A Ferric uptake regulatio 30.2 1.5E+02 0.0052 25.0 7.5 62 269-330 16-77 (150)
305 2d2s_A Exocyst complex compone 29.9 2.8E+02 0.0095 25.5 9.7 90 439-531 24-119 (235)
306 3us6_A Histidine-containing ph 29.6 2.6E+02 0.0089 23.7 11.1 105 387-495 11-120 (153)
307 3ygs_P Procaspase 9; apoptosis 29.1 93 0.0032 24.2 5.4 64 266-334 25-88 (97)
308 1bpo_A Protein (clathrin); cla 28.6 2.2E+02 0.0077 29.2 9.2 92 245-337 361-452 (494)
309 2fu4_A Ferric uptake regulatio 28.5 1.7E+02 0.006 21.3 7.1 60 458-518 7-67 (83)
310 2fe3_A Peroxide operon regulat 28.4 1.5E+02 0.0052 24.8 7.1 60 270-329 12-71 (145)
311 3hra_A Ankyrin repeat family p 27.8 48 0.0016 29.0 4.0 152 255-417 12-172 (201)
312 3jxi_A Vanilloid receptor-rela 26.8 18 0.00062 33.7 0.9 114 287-405 10-159 (260)
313 3bu8_A Telomeric repeat-bindin 25.7 2.4E+02 0.0081 25.6 7.8 48 261-308 88-143 (235)
314 3pvs_A Replication-associated 25.4 5.5E+02 0.019 26.1 15.1 29 381-411 192-220 (447)
315 2f6m_A Suppressor protein STP2 25.1 1.2E+02 0.0042 21.7 4.7 45 541-586 5-49 (65)
316 2fe3_A Peroxide operon regulat 24.7 2.2E+02 0.0074 23.8 7.4 60 458-518 12-71 (145)
317 3c1d_A Protein ORAA, regulator 24.5 3.3E+02 0.011 23.2 10.9 16 450-465 47-62 (159)
318 1bpo_A Protein (clathrin); cla 24.4 4E+02 0.014 27.4 10.2 144 447-603 343-486 (494)
319 2keb_A DNA polymerase subunit 24.3 2.5E+02 0.0086 21.9 6.6 56 522-579 28-88 (101)
320 1k1a_A B-cell lymphoma 3-encod 23.6 74 0.0025 28.7 4.6 85 440-528 13-101 (241)
321 1mzb_A Ferric uptake regulatio 23.3 1.9E+02 0.0066 23.8 6.7 61 458-519 8-69 (136)
322 3eu9_A Huntingtin-interacting 22.4 48 0.0016 29.9 3.0 15 323-337 48-62 (240)
323 3t8k_A Uncharacterized protein 22.0 1.7E+02 0.0059 25.5 6.6 92 325-418 14-109 (186)
324 3hra_A Ankyrin repeat family p 21.9 95 0.0032 27.0 4.8 78 324-406 12-92 (201)
325 3pvs_A Replication-associated 21.9 6.3E+02 0.021 25.6 11.7 54 515-568 267-325 (447)
326 2bbr_A Viral CAsp8 and FADD-li 21.7 4.3E+02 0.015 23.5 9.8 62 365-430 40-105 (195)
327 4aez_C MAD3, mitotic spindle c 21.6 2.6E+02 0.0088 25.6 7.5 51 262-312 131-183 (223)
328 3v31_A Ankyrin repeat family A 21.4 1.6E+02 0.0055 24.5 6.2 18 253-270 8-25 (167)
329 2rfa_A Transient receptor pote 20.6 1.9E+02 0.0066 25.6 6.9 185 286-493 7-219 (232)
330 3e3v_A Regulatory protein RECX 20.3 4.2E+02 0.015 22.9 10.5 48 486-534 51-98 (177)
331 4g8k_A 2-5A-dependent ribonucl 20.2 1.1E+02 0.0038 29.5 5.3 154 252-418 172-329 (337)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-28 Score=274.85 Aligned_cols=385 Identities=7% Similarity=-0.053 Sum_probs=267.7
Q ss_pred CHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------
Q 036072 210 SHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG------------ 275 (631)
Q Consensus 210 ~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g------------ 275 (631)
+...+..+...+...+ ..|.++|+.+.. ..++..+|+.++.+|.+.|++++|..+|+++....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 4444444444443332 337777765532 24567777777777777777777777777432221
Q ss_pred ---C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH--------------------------------
Q 036072 276 ---L-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-------------------------------- 319 (631)
Q Consensus 276 ---~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-------------------------------- 319 (631)
. .+..+|+.++.+|.+.|++++|+++|+.|.+.+ +.+...+..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 1 135677777777777777777777777777654 222222222
Q ss_pred ------HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 320 ------LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 320 ------Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHH
Confidence 244455666666666666666543 45666666667777777777777777766665532 2555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccCCHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYD 454 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~ 454 (631)
.+.|++++|.++++++.+.. ..+..+++.+...|.+. +..+|+.++.+|.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666432 23444555554444432 56678888888888888999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 036072 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-- 532 (631)
Q Consensus 455 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-- 532 (631)
+|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 8888887643 367888888888888888899998888888754 346788888888888888999998888888775
Q ss_pred --CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 533 --GCCPD--DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 533 --g~~p~--~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+...
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 66777 7788888888888899999998888888765 44778888888888888999888888888876553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.3e-29 Score=278.88 Aligned_cols=382 Identities=9% Similarity=-0.029 Sum_probs=323.3
Q ss_pred HHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 036072 213 LVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290 (631)
Q Consensus 213 ~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~ 290 (631)
.+..++..+...+ +.|+.+|+.+. +..|+..+|..++.+|.+.|++++|..+|+.+... ..+..+++.++.+|.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHH
Confidence 3444455443333 45888888775 34568899999999999999999999999988643 357889999999999
Q ss_pred HccCHHHHHHHHHHHHh-C--------------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHH-
Q 036072 291 AAKERKKAVAIFELMNK-Y--------------KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL- 354 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~-~--------------g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~L- 354 (631)
+.|++++|+++|+++.. . +.+.+..+|+.++.+|.+.|++++|.++|+++.+..+.+...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 99999999999995322 1 2344689999999999999999999999999976544444444433
Q ss_pred -------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 355 -------------------------------------LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 355 -------------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
+..|.+.|++++|.++|+++.+. .++..+|+.++.+|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 55667889999999999999876 579999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~~~ 458 (631)
++++|.++|+++.+.+.. +..+++.++..+.+. +..+|+.++.+|.+.|++++|.++|++
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999986533 566677776666543 678999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538 (631)
Q Consensus 459 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (631)
+.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +.
T Consensus 399 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 399 SSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 987633 368899999999999999999999999999874 457899999999999999999999999999986443 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP--VLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++...+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999876 67787 78999999999999999999999999987653
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.2e-29 Score=270.32 Aligned_cols=213 Identities=15% Similarity=0.251 Sum_probs=163.8
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 368 GRVWNEMIDKGFKPDV-VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
..+.+++.+.+..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++... .....+.
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~------~~~~~~~ 83 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA------ATESSPN 83 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC------CSSSSCC
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc------hhhhhhc
Confidence 3344444444433322 23455555555555555555555555555555555555554444433200 0001223
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
+.+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 586 (631)
++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.3e-29 Score=268.44 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=177.8
Q ss_pred HHHHHHHHHhcc-cCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HH
Q 036072 332 EAQLLFDKLKHR-FTPN-LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK---------RS 400 (631)
Q Consensus 332 ~A~~l~~~m~~~-~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---------~~ 400 (631)
.++.+.++++++ .... ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345555666543 3322 346888999999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 480 (631)
+|.++|++|.+.|+.||..||+++ |.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~l---------------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNG---------------ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 999999999999999998887765 55666679999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 551 (631)
.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||++++..|+..
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998863
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.1e-22 Score=210.31 Aligned_cols=368 Identities=14% Similarity=0.033 Sum_probs=312.5
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
+.|.+.+..+.+.. +.+...+..+...+...|++++|...++...+..+.+..+|..+...+...|++++|++.|+.+
T Consensus 16 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34666665543321 2346677788888999999999999999999988888999999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.+.. +.+..+|..+..++.+.|++++|...|+++.+..+.+...+..+...+...|++++|.+.|+++.+.. +-+..+
T Consensus 94 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 171 (388)
T 1w3b_A 94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVA 171 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 9864 45677899999999999999999999999887666677788899999999999999999999999863 335788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 465 (631)
|..+...+...|++++|...|+++.+. .|+ +...|..+...+...|++++|...|++..+...
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN--------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 999999999999999999999999885 343 445677788889999999999999999887643
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
-+..++..+..+|...|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 267889999999999999999999999999864 3457889999999999999999999999999864 34789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHhh
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETT 618 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~~~~~ 618 (631)
..+...|++++|.++++++.+.. +.+...+..+..++.+.|++++|.+.++++..... .....+...+...
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 383 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHH
Confidence 99999999999999999998763 45678899999999999999999999999986543 3445554544443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=2e-21 Score=204.08 Aligned_cols=338 Identities=14% Similarity=0.039 Sum_probs=292.1
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
+.|..++....+. .+.+..+|..+..++.+.|++++|...|+++.+..+.+..+|..+..++...|++++|++.|+.+
T Consensus 50 ~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 127 (388)
T 1w3b_A 50 DRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4577777765432 24568899999999999999999999999999988878889999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.+.. +.+...+..+...+...|++++|..+|+++.+..+.+..+|+.+...+.+.|++++|...|+++.+.. +-+...
T Consensus 128 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 128 LQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 9875 44566778888999999999999999999987767778899999999999999999999999999864 235778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 465 (631)
|..+...+...|++++|...+++..+. .|+ +..++..+...|.+.|++++|.+.|+++.+....
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSL--SPN--------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999998875 343 4556777888999999999999999999986432
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
+..+|..+..++.+.|++++|...|+++.+.. +.+..+++.+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 67789999999999999999999999999864 5678999999999999999999999999998763 23688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g 587 (631)
..|.+.|++++|.+.++++.+.. +.+...|..+...+...|
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999853 334666777777776655
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=5.2e-20 Score=196.87 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=277.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+.+.|++++|+.+|+++.+..+.+..++..+..++...|++++|+..|+.+.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 467899999999999999999999999998888889999999999999999999999999999876 5578899999999
Q ss_pred HHcCCChHHHHHHHHHHhcccCCCh---hhHHHHHH------------HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNL---TTYTVLLG------------GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~---~~y~~Li~------------~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
|.+.|++++|...|+++.+..+.+. ..+..++. .+.+.|++++|...|+++.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999999987655555 66666644 4899999999999999999863 347888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 036072 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468 (631)
Q Consensus 389 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 468 (631)
+..+|.+.|++++|.+.|+.+.+.. |+ +..+|..+...|...|++++|...|+++.+.... +.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~--~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 245 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK--ND--------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 245 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH--CS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hH
Confidence 9999999999999999999998752 22 4566777888999999999999999999875322 44
Q ss_pred HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 469 LTYNAL------------IKLMKIQKMPDEAVRIYKEMVRSGFKPT-----IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 469 ~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+..+ ...|...|++++|..+|+++.+. .|+ ...|..+..++.+.|++++|...++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455444 78899999999999999999985 344 45788899999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHH
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD------------LSRAG-----RSYVLDE 594 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~------------~~~~g-----~~~~A~~ 594 (631)
... .+...|..+..+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+
T Consensus 324 ~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 324 MEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred hCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 632 378999999999999999999999999999853 3345566666533 33334 5566777
Q ss_pred HHHHH
Q 036072 595 LAQKM 599 (631)
Q Consensus 595 l~~~m 599 (631)
.++++
T Consensus 402 ~y~~~ 406 (450)
T 2y4t_A 402 AYRKL 406 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=3.5e-19 Score=190.42 Aligned_cols=317 Identities=10% Similarity=-0.014 Sum_probs=260.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc
Q 036072 264 MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 264 A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~ 343 (631)
+...+.+.....+.+...+..+...+...|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444555555555577789999999999999999999999999864 567899999999999999999999999999887
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 036072 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV----VAHNIM------------LEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 344 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~l------------i~~~~~~g~~~~A~~ll~ 407 (631)
.+.+..++..+...|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|++.|+
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6778899999999999999999999999999985 3443 455555 344889999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 036072 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487 (631)
Q Consensus 408 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 487 (631)
.+.+.. |+ +..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|
T Consensus 168 ~~~~~~--~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 168 KILEVC--VW--------------DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHC--TT--------------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhC--CC--------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 998753 33 45567778899999999999999999998763 34788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHc
Q 036072 488 VRIYKEMVRSGFKPTIHTYNMI------------MKSYFQTGNYEMGRKVWDEMIRRGCCPD----DNSYTVLIGGLISQ 551 (631)
Q Consensus 488 ~~l~~~m~~~g~~p~~~t~~~L------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~ 551 (631)
+..|+++.+.. +.+...+..+ ..+|...|++++|...|+++.+.... + ...|..+...+.+.
T Consensus 231 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 231 LSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHC
Confidence 99999998753 2344455444 88999999999999999999985322 2 45788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
|++++|...++++.+.. +.+...|..+..+|...|++++|.+.++++.+..
T Consensus 309 g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999998763 4468899999999999999999999999997654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.4e-19 Score=191.99 Aligned_cols=354 Identities=12% Similarity=-0.048 Sum_probs=292.7
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|.+.|..+.... ||...|..+..++.+.|++++|...++++.+.++.+..++..+..++...|++++|+..|+.+
T Consensus 23 ~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 23 DDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45888888875433 689999999999999999999999999999988888899999999999999999999999998
Q ss_pred HhCCCCcC------------------------------------------------------------------------
Q 036072 306 NKYKFKAG------------------------------------------------------------------------ 313 (631)
Q Consensus 306 ~~~g~~~~------------------------------------------------------------------------ 313 (631)
.+.+. .+
T Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 100 SLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 77641 11
Q ss_pred -------HHHHHHHHHHHHc---CCChHHHHHHHHHHhc-----c--c-------CCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 314 -------VDTINCLLENLGR---SKLPKEAQLLFDKLKH-----R--F-------TPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 314 -------~~~~~~Ll~~~~~---~g~~~~A~~l~~~m~~-----~--~-------~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
...+..+...+.. .|++++|..+|+++.+ . . +.+..++..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2233333333333 7999999999998766 2 1 2345678888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
.|+++.+... +...+..+...+...|++++|.+.++.+.+.. |+ +..++..+...|...|++
T Consensus 259 ~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 259 DIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SN--------------NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TT--------------CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cC--------------CHHHHHHHHHHHHHhCCH
Confidence 9999988643 38888889999999999999999999988753 32 344566778889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
++|...|++..+.... +...+..+...+...|++++|..+++++.+.. +.+..++..+..+|...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999886443 56788889999999999999999999998753 335678899999999999999999999998
Q ss_pred HHcCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 530 IRRGCC-PD----DNSYTVLIGGLIS---QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 530 ~~~g~~-p~----~~t~~~li~~~~~---~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.+.... ++ ...|..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++...
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 864221 12 4488899999999 999999999999998864 44677889999999999999999999999887
Q ss_pred cCC
Q 036072 602 SGK 604 (631)
Q Consensus 602 ~g~ 604 (631)
...
T Consensus 478 ~~~ 480 (514)
T 2gw1_A 478 LAR 480 (514)
T ss_dssp HCS
T ss_pred hcc
Confidence 664
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.9e-17 Score=167.35 Aligned_cols=302 Identities=11% Similarity=0.023 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
|+..|..+...+...|++++|...|+++.+..+.+..++..+..++...|++++|+..|+.+.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 356677788888888899999999988888777778888888888888888888888888888764 4466778888888
Q ss_pred HHcCCChHHHHHHHHHHhcccC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVL------------LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~L------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
|...|++++|...|+++.+..+ .+...+..+ ...+...|++++|..+++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 8888888888888888776544 445555544 355566666666666666665542 234555556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 036072 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468 (631)
Q Consensus 389 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 468 (631)
+...+...|++++|...++.+.+. .|+ +..++..+...|...|++++|...|+...+.... +.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 222 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL--KSD--------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 222 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CSC--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-ch
Confidence 666666666666666666665553 222 2333444555555556666666666655543211 22
Q ss_pred HHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 469 LTYNA------------LIKLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 469 ~t~~~------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
..+.. +...+.+.|++++|...++++.+.... +. ..+..+..+|...|++++|...+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22211 123344444444444444444442111 11 11223344444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.. .+..+|..+...|...|++++|.+.|+++.+
T Consensus 302 ~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 302 EP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 1344444444444444444444444444444
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-17 Score=180.52 Aligned_cols=338 Identities=10% Similarity=-0.030 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|......+.+.|++++|+..|+++...++ +..++..+..++...|++++|++.|+.+.+.. +.+..++..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 45677788889999999999999999998874 88899999999999999999999999999876 56788999999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCC---------------------------------------------------------
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPN--------------------------------------------------------- 347 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~--------------------------------------------------------- 347 (631)
...|++++|...|+++....+++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999876543222
Q ss_pred ----------------------hhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCC--------CCHHHHHHH
Q 036072 348 ----------------------LTTYTVLLGGWCR---VKNLMEAGRVWNEMID-----KGFK--------PDVVAHNIM 389 (631)
Q Consensus 348 ----------------------~~~y~~Li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------p~~~ty~~l 389 (631)
...+..+...+.. .|++++|..+|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2233333333443 7999999999999988 3112 235678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
...+...|++++|...++.+.+.. |+. .++..+...|...|++++|...++.+.+... .+..
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 305 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRV---------------NSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSS 305 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCH---------------HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHH
Confidence 899999999999999999998764 332 2345567888889999999999999987643 3677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|..+++++.+.... +..+|..+...|.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHH
Confidence 88999999999999999999999999864 336778899999999999999999999999876432 6778899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 036072 550 SQDRSGEAYKYLEEMLEKGM-KAP----VLDYNKFAADLSR---AGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 604 (631)
..|++++|...++++.+... .++ ...+..+..++.. .|++++|.+.++++.....
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999976421 122 3488899999999 9999999999999876553
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.6e-16 Score=161.86 Aligned_cols=302 Identities=10% Similarity=-0.014 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+.+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+..+.+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4678888999999999999999999999875 567889999999999999999999999998876666888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 359 CRVKNLMEAGRVWNEMIDKGFKP----DVVAHNIM------------LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~g~~p----~~~ty~~l------------i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++.+.+.. |+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----- 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VW----- 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----
Confidence 9999999999999999875 34 34444444 578889999999999999998753 32
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036072 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502 (631)
Q Consensus 423 ~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 502 (631)
+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~ 221 (359)
T 3ieg_A 153 ---------DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 221 (359)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred ---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 44566777888999999999999999998864 3478899999999999999999999999998753 223
Q ss_pred HHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 503 IHTYN------------MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD----NSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 503 ~~t~~------------~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
...+. .+...+...|++++|...++++.+.... +. ..+..+...+...|++++|.+.++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33332 3366789999999999999999986433 33 2355677889999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 567 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.. +.+...|..+..++.+.|++++|.+.+++.....
T Consensus 301 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 301 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 63 4478889999999999999999999999998755
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=8.8e-17 Score=175.73 Aligned_cols=356 Identities=12% Similarity=0.020 Sum_probs=278.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|.+.|..+.... +.+...|..+..++.+.|++++|+..|+++.+.++.+..++..+..++...|++++|+..|+.+
T Consensus 42 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45889888875432 3468899999999999999999999999999988888999999999999999999999999644
Q ss_pred HhCCCC------------------------------------cCHH------------------------------HHHH
Q 036072 306 NKYKFK------------------------------------AGVD------------------------------TINC 319 (631)
Q Consensus 306 ~~~g~~------------------------------------~~~~------------------------------~~~~ 319 (631)
....-. |+.. ....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA 199 (537)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence 211100 1100 1111
Q ss_pred HHHHHHcC--------CChHHHHHHHHHHhcccCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 320 LLENLGRS--------KLPKEAQLLFDKLKHRFTPNLT-------TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384 (631)
Q Consensus 320 Ll~~~~~~--------g~~~~A~~l~~~m~~~~~p~~~-------~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 384 (631)
+...+... |++++|..+|+++.+..+.+.. +|..+...+...|++++|...|+++.+. .|+..
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 277 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPN 277 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCch
Confidence 22222211 3778888888888765554433 4667778888899999999999999986 45678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
.|..+...+...|++++|.+.++.+.+.. |+ +..+|..+...|...|++++|...|++..+...
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN--PE--------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC--CC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 88888899999999999999999988753 32 455677788889999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHH
Q 036072 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-----CCPDDN 539 (631)
Q Consensus 465 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~ 539 (631)
. +...+..+...+...|++++|..+++++.+.. +.+...+..+..+|...|++++|...|+++.+.. ......
T Consensus 342 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 342 E-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp T-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 3 56788899999999999999999999999864 4457789999999999999999999999987642 112233
Q ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 540 SYTVLIGGLISQ----------DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 540 t~~~li~~~~~~----------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.+..+...+... |++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++......
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 345556677777 99999999999999864 45678899999999999999999999999877553
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.6e-16 Score=161.63 Aligned_cols=287 Identities=10% Similarity=-0.058 Sum_probs=196.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
..+...+..+...+...|++++|..+|+++.+..+.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 33455667777888888999999999998888877677777777888888888888888888888764 45677788888
Q ss_pred HHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 322 ENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 322 ~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
..+...| ++++|...|++..+..+.+...|..+...+...|++++|...|+++.+... .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 8888888 888888888888766566677888888888888888888888888877632 23455666777888888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------CCCCHHHHH
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG--------CPPDGLTYN 472 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~ 472 (631)
+|.+.++.+.+.. |+ +..++..+...|...|++++|...+++..+.. .+.+..++.
T Consensus 177 ~A~~~~~~al~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 177 LAERFFSQALSIA--PE--------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHHTTC--TT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHHhC--CC--------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 8888888877642 32 33445556666777777777777777665431 122334555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
.+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|...|+++.+... .+...+..+..++
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 55666666666666666666655532 22345555555555566666666666555554321 1444444444444
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.2e-16 Score=157.89 Aligned_cols=291 Identities=8% Similarity=-0.031 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+...+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++++.+..+.+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44567777778888888888888888887764 44556666677778888888888888888877666677788888888
Q ss_pred HHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHH
Q 036072 358 WCRVK-NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436 (631)
Q Consensus 358 ~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 436 (631)
+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.++.+.+.... +...+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~ 162 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----------------CHLPM 162 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT----------------CSHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc----------------cHHHH
Confidence 88888 8888888888887653 234667788888888888888888888888765322 22334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG--------FKPTIHTYNM 508 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ 508 (631)
..+...|...|++++|...+++..+... .+...+..+...+...|++++|...++++.+.. ...+..++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 4466777778888888888888876532 356778888888888888888888888877531 1233567778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcC
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-SRAG 587 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~-~~~g 587 (631)
+..+|...|++++|...+++..+.... +...|..+...|...|++++|.+.++++.+.. +.+...+..+..++ ...|
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhC
Confidence 888888888888888888888775433 56777888888888888888888888877653 33566677777766 3455
Q ss_pred CH
Q 036072 588 RS 589 (631)
Q Consensus 588 ~~ 589 (631)
+.
T Consensus 320 ~~ 321 (330)
T 3hym_B 320 DS 321 (330)
T ss_dssp C-
T ss_pred ch
Confidence 54
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.4e-16 Score=163.37 Aligned_cols=302 Identities=11% Similarity=-0.046 Sum_probs=212.4
Q ss_pred HccCHHHHHH-HHHHHHhCCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHH
Q 036072 291 AAKERKKAVA-IFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366 (631)
Q Consensus 291 ~~g~~~~A~~-v~~~m~~~g~---~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~ 366 (631)
..|++++|++ .|+...+... ..+...+..+...+...|++++|...|+++.+..+.+..+|..+...+.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3466666666 6665544321 11234566677777777788888887777776656667777777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH--HHHHhhcCHHHHHHHHHHHh
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--IWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l--i~~~~~~~~~~~~~li~~~~ 444 (631)
|...|+++.+.. +.+..++..+...+...|++++|.+.++.+.+....... .+..+ +..... ....+..+...+
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~- 192 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEGAGGAG-LGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC----------------CTTHHHH-
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHHHHHhhhhc-ccHHHHHHHHHh-
Confidence 888888777653 336677777777888888888888888777764322111 10000 000000 000111122233
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~ 523 (631)
..|++++|...|+++.+..... +..++..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7789999999999998764332 57899999999999999999999999998863 446789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHH
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA----------PVLDYNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~A~ 593 (631)
..|+++.+... .+..++..+...|...|++++|...++++.+..... ....|..+..++...|+.++|.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999988643 368899999999999999999999999998642111 2678999999999999999999
Q ss_pred HHHHH
Q 036072 594 ELAQK 598 (631)
Q Consensus 594 ~l~~~ 598 (631)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88763
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=6.6e-16 Score=160.08 Aligned_cols=289 Identities=13% Similarity=0.016 Sum_probs=205.8
Q ss_pred cCChhHHHH-HHHHHHHCCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 258 ARQFETMVS-MLEEMGEKGLL----SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 258 ~g~~~~A~~-l~~~m~~~g~~----~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
.|++++|.. .+++....... +...+..+...+...|++++|+..|+.+.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 55544433221 23355666677777777777777777777654 4466667777777777777777
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHcC
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI---------------MLEGLLKIG 397 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~---------------li~~~~~~g 397 (631)
|...|+++.+..+.+..++..+...|...|++++|...|+++...... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777766555556667777777777777777777777777764321 1111111 233444889
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 477 (631)
++++|...++.+.+...... +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 260 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSI--------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGAT 260 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 99999999999987533210 23456667888889999999999999998763 3367899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP----------DDNSYTVLIGG 547 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~t~~~li~~ 547 (631)
+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...|+++.+..... ...+|..+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 999999999999999998863 4467899999999999999999999999988742221 26899999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 036072 548 LISQDRSGEAYKYLEEM 564 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m 564 (631)
|...|+.++|..++++.
T Consensus 340 ~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 340 LSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHTCGGGHHHHHTTC
T ss_pred HHHhCChHhHHHhHHHH
Confidence 99999999999887643
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.4e-16 Score=162.45 Aligned_cols=277 Identities=9% Similarity=-0.055 Sum_probs=212.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 392 (631)
+...+..+...+.+.|++++|..+|+++.+..+.+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344577778888888888888888888877666778888888888999999999999998888763 3357788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 036072 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTY 471 (631)
Q Consensus 393 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 471 (631)
|...|++++|.+.|+++.+. .|+.......+. .....+..+...|...|++++|..+|+++.+.... .+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK----GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhc----cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999888774 232211100000 01234455678889999999999999999887432 268899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551 (631)
Q Consensus 472 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 551 (631)
..+...|...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..+|..+..+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 999999999999999999999999864 446889999999999999999999999999986432 588999999999999
Q ss_pred CCHHHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 552 DRSGEAYKYLEEMLEKGM---K--------APVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
|++++|...|+++.+..- . .+...|..+..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999986421 1 1356799999999999999998887664
No 19
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=185.41 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEE---RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
..+||+||++||+.|++++|.++|.+|.+ +|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788889999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 036072 510 MKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP------VLDYNKFAAD 582 (631)
Q Consensus 510 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~------~~~~~~li~~ 582 (631)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 578999999999999999999999999877654 344444444 3455554 3344556666
Q ss_pred HHhcC
Q 036072 583 LSRAG 587 (631)
Q Consensus 583 ~~~~g 587 (631)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66555
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=6.7e-15 Score=160.72 Aligned_cols=338 Identities=12% Similarity=-0.008 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|+..|+++.+..+.+..++..+..+|...|++++|++.|+.+.+.. +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 67788899999999999999999999999988899999999999999999999999999999876 56788999999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHH----------
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK------GFKPDVVAHNI---------- 388 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~ty~~---------- 388 (631)
...|++++|...|+.+... ....+..+..+...+...+|...++++... ...|+......
T Consensus 104 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN----GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999744322 222233345566666678888888888543 12232222111
Q ss_pred ----------------HHHHHH------------HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 389 ----------------MLEGLL------------KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 389 ----------------li~~~~------------~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
+..++. ..|++++|..+++.+.+.... +...+..+ ..++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~--------~~~~~~~g 250 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA--------ALALCYTG 250 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH--------HHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH--------HHHHHHHH
Confidence 111111 124788999999988875322 22222221 23456677
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
..+...|++++|...|+...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 88899999999999999998864 557888899999999999999999999999864 446888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+|...++++.+.... +...|..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 328 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999986533 56789999999999999999999999998874 4456788999999999999999999999875
Q ss_pred h
Q 036072 601 F 601 (631)
Q Consensus 601 ~ 601 (631)
.
T Consensus 406 ~ 406 (537)
T 3fp2_A 406 R 406 (537)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.4e-15 Score=157.72 Aligned_cols=235 Identities=9% Similarity=-0.049 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+.+.|++++|..+|+++.+..+.+..++..+..++...|++++|++.|+.+.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345577888888888999999999999888877778888888888888888888888888888764 4567788888888
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTY----------TVLLGGWCRVKNLMEAGRVWNEMIDKGFK-PDVVAHNIMLEG 392 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y----------~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~ 392 (631)
|...|++++|...|+++.+..+.+...+ ..+...+.+.|++++|..+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888888888888765322222222 33466666667777777777776664221 145566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472 (631)
Q Consensus 393 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 472 (631)
|...|++++|++.|+++.+.. |+ +..+|..+...|...|++++|...|+++.+... .+..++.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~--p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 285 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR--PE--------------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRY 285 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHH
Confidence 666666666666666665532 22 233444455555555555555555555554321 1344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
.+..+|...|++++|...|+++.+
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=183.36 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVR---SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (631)
--..|||+||.+||+.|++++|.++|.+|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036072 543 VLIGGLISQDRS-GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 543 ~li~~~~~~g~~-~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (631)
+||.++++.|+. ++|.++|++|.+.|+.||..+|++++..+.+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999998877665433333
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=6e-15 Score=149.75 Aligned_cols=265 Identities=10% Similarity=-0.002 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|.+.|+.+.+.. +.+..++..+...|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456677788888899999999988888777777888888888888888888888888888764 45677788888888
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVL--------------LG-GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~L--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
...|++++|...++++.+..+.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888888888766544444444444 11 2334444445555544444432 1133444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
...+.. .|++++|.+.++++.+... .+..
T Consensus 179 a~~~~~--------------------------------------------------~~~~~~A~~~~~~~~~~~~-~~~~ 207 (327)
T 3cv0_A 179 GVLYNL--------------------------------------------------SNNYDSAAANLRRAVELRP-DDAQ 207 (327)
T ss_dssp HHHHHH--------------------------------------------------TTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHH--------------------------------------------------hccHHHHHHHHHHHHHhCC-CcHH
Confidence 444444 4555555555554444321 2344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP-----------DD 538 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~ 538 (631)
.+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..... +.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 55555555555555666665555555432 2234555556666666666666666666555432111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
.+|..+..++...|+.++|..++++
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5556666666666666666665543
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.8e-12 Score=140.49 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=279.0
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----ccCHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA----AKERKK 297 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~----~g~~~~ 297 (631)
..|+..|....+. | +...+..+-..|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 60 ~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 60 TQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 4588888776544 2 47788888888888 899999999999998876 56777778888888 789999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh----cCCHHHHHH
Q 036072 298 AVAIFELMNKYKFKAGVDTINCLLENLGR----SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR----VKNLMEAGR 369 (631)
Q Consensus 298 A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~ 369 (631)
|++.|+...+.| +...+..|...|.. .++.++|...|++..+. .+...+..|...|.. .+++++|.+
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 999999999876 57778888888877 78999999999997653 377888899999988 899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
.|++..+.| +..++..+...|.. .++.++|.++|+...+.|. ...+..+...|..
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------------------~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN------------------SIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHC
Confidence 999999875 66778888888886 7899999999999887642 2233334445555
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 446 ----RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ-----KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 446 ----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
.++.++|...|+...+.| +...+..+...|... ++.++|...|++..+.| +...+..|...|...
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 799999999999988764 566777788888887 89999999999999876 456778888888886
Q ss_pred C---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 036072 517 G---NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR---- 585 (631)
Q Consensus 517 g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~---- 585 (631)
| +.++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..|...|..
T Consensus 342 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCC
Confidence 6 7899999999999874 78888899999998 899999999999999976 56788889999998
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 036072 586 AGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 586 ~g~~~~A~~l~~~m~~~g 603 (631)
.++.++|.+++++....|
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999988776
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.2e-14 Score=147.51 Aligned_cols=276 Identities=10% Similarity=-0.045 Sum_probs=195.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 395 (631)
.+..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344455556666666666666666655444556666666666666677777777666666542 2345566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH-HH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL-IT-GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473 (631)
Q Consensus 396 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 473 (631)
.|++++|.+.++.+.+..... ...+..+..... +......+ .. .+...|++++|..+++++.+.... +...+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQY-EQLGSVNLQADV--DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT-TTC----------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHHH--HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 777777777776666542111 111111100000 00001111 12 367788999999999999886433 7889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+...+...|++++|.++++++.+.. +.+..++..+..+|...|++++|...++++.+... .+..+|..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998864 44678899999999999999999999999988643 368899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 554 SGEAYKYLEEMLEKGMKA-----------PVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 554 ~~~A~~ll~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
+++|.+.++++.+..... +...|..+..++.+.|+.++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999998753221 467899999999999999999998864
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=1e-11 Score=134.50 Aligned_cols=321 Identities=11% Similarity=0.060 Sum_probs=270.1
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 244 NSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA----AKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 244 ~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~----~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
+...+..+-..|.. .+++++|...|++..+.| +...+..|...|.. .++.++|++.|+...+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 46777778778877 899999999999998875 56788888899998 899999999999999875 667
Q ss_pred HHHHHHHHHHc----CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 316 TINCLLENLGR----SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR----VKNLMEAGRVWNEMIDKGFKPDVVAHN 387 (631)
Q Consensus 316 ~~~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~ 387 (631)
.+..|...|.. .+++++|...|++..+. -+...+..|...|.. .+++++|.+.|++..+.| +...+.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 78888888888 78999999999997653 267788888888887 789999999999999875 678888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHH
Q 036072 388 IMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEM 459 (631)
Q Consensus 388 ~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 459 (631)
.+...|.. .++.++|.+.|+...+.|. ...+..+...|.. .+++++|..+|+..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSGD------------------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88888888 8999999999999887652 2233444555554 78999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 036072 460 EERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT-----GNYEMGRKVWDEMI 530 (631)
Q Consensus 460 ~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~-----g~~~~A~~~~~~m~ 530 (631)
.+.| +...+..+...|.. .++.++|..+|++..+.| +...+..|...|... +++++|...|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8764 55667777777777 899999999999998875 556778888888887 89999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 036072 531 RRGCCPDDNSYTVLIGGLISQD---RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 531 ~~g~~p~~~t~~~li~~~~~~g---~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 603 (631)
+.| +...+..+...|...| +.++|.++|++..+.| +...+..|...|.. .+++++|.+++++.-+.|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 875 5677888888888766 7899999999999875 67788899999998 899999999999998877
Q ss_pred C
Q 036072 604 K 604 (631)
Q Consensus 604 ~ 604 (631)
.
T Consensus 398 ~ 398 (490)
T 2xm6_A 398 L 398 (490)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=4e-14 Score=142.44 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=135.9
Q ss_pred HHHHccCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 288 AFAAAKERKKAVAIFELMNKYKFKAG--VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 288 ~~~~~g~~~~A~~v~~~m~~~g~~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
.....|+++.|+..++..... .|+ ......+.++|...|+++.|...++. ..+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 334455555555555544332 122 22334445556666666555543322 23344555555666666666666
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 366 EAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
+|++.++++...+..|+ ...+..+...+...|++++|++.++. |+ +...+..++..|.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~--------------~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD--------------SLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC--------------CHHHHHHHHHHHH
Confidence 66666666655543332 33344444556666666666666554 11 2334444555556
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPPDGLTY---NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 521 (631)
+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++
T Consensus 142 ~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665542 332111 11222333346667777777776665 24456666666677777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE-AYKYLEEMLEK 567 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~ll~~m~~~ 567 (631)
|...|++..+.... +..++..++..+...|+.++ +.++++++.+.
T Consensus 219 A~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 219 AEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777776665332 56666666666666666654 45666666654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=3.6e-12 Score=139.52 Aligned_cols=353 Identities=11% Similarity=0.052 Sum_probs=218.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
|...|..++. +.+.|+++.|..+|+++.+..+.+...|..++..+.+.|++++|.++|+.+.+.. |+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 4566666666 3556667777777777666666666666666666666677777777776666653 455555555532
Q ss_pred H-HcCCChHHHHH----HHHHHhcc---cCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 324 L-GRSKLPKEAQL----LFDKLKHR---FTPNLTTYTVLLGGWCR---------VKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 324 ~-~~~g~~~~A~~----l~~~m~~~---~~p~~~~y~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
. ...|+.+.|.+ +|+..... .+.+...|..++....+ .|+++.|..+|++..+.........|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23455554443 44444321 12234556555554443 56666666666666652111111222
Q ss_pred HHHHHHH-------------HHcCCHHHHHHHHHHHH------HcC---CCCc--------HHHHHH-------------
Q 036072 387 NIMLEGL-------------LKIGKRSDAIKLFEVMK------AKG---PSPN--------VRSYTI------------- 423 (631)
Q Consensus 387 ~~li~~~-------------~~~g~~~~A~~ll~~m~------~~g---~~p~--------~~~~~~------------- 423 (631)
....... .+.++++.|..++.++. +.. +.|+ ...|..
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2221110 01233444444444321 110 1111 011111
Q ss_pred ---------------HHHHHhhcCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 424 ---------------MIWKFCKQNAAVYTCLITGFGN-------RRRMD-------IVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 424 ---------------li~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
.+... -.++..|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 11111 1156677777777765 68876 899999988763233467888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG-LISQ 551 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~ 551 (631)
+..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.... +...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHc
Confidence 99999999999999999999985 443 357888899889999999999999999875322 23333322222 3368
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
|+.++|.++|++.++.. +-+...|..++..+.+.|+.++|..++++....+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999999998763 34578899999999999999999999999887653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.4e-13 Score=138.40 Aligned_cols=254 Identities=10% Similarity=0.012 Sum_probs=205.5
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPN-LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+-....|.+..|...++......+.+ ......+.++|...|++++|...++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556899999999988765432222 23556678999999999999987755 24567788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 480 (631)
+|++.++++...+..|+ +...+..+...|...|++++|++.+++ +.+...+..+...+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~--------------~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVT--------------NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHHHSCCCCS--------------CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 99999999998876777 344455667888999999999999987 4678899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTY---NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~---~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|
T Consensus 143 ~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999864 553211 223333444589999999999999873 34889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV-LDELAQKMRFSG 603 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g 603 (631)
...|+++++.. +-+..++..++..+...|+.++ +.++++++....
T Consensus 220 ~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 220 EGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999874 4577889999999999999876 678998887654
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=2.9e-15 Score=155.35 Aligned_cols=221 Identities=8% Similarity=0.061 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
.+|..+..++.+.|++++|++.|.+. .+..+|..++.++...|++++|+..++..++. .+++.+.+.|+.+|.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 35555555555555555555555332 23345555555555555555555544444442 233444555555555
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 405 (631)
+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.
T Consensus 106 Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 106 KTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ---CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHH
Confidence 5555555554442 134445555555555555555555555544 1355555555555555555555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036072 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485 (631)
Q Consensus 406 l~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 485 (631)
+..+. ++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.++
T Consensus 171 ~~KA~---------------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 171 ARKAN---------------------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHT---------------------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcC---------------------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 55440 223344444455555555555333322 1122222334555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
+|..+++...... .-....|+-|.-+|++
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5555555554332 2334444444444443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=6.4e-15 Score=152.79 Aligned_cols=323 Identities=11% Similarity=0.058 Sum_probs=170.8
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.+.|.. .+|..+|..++..+...|++++|+.+++...+ ...++.+...++.+|.+.|+++++.++++
T Consensus 50 eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--- 118 (449)
T 1b89_A 50 EAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFIN--- 118 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTT---
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHHc---
Confidence 47777753 25788999999999999999999997776665 35567789999999999999999998884
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
.|+..+|+.+.+.|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|
T Consensus 119 ----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~W 180 (449)
T 1b89_A 119 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 180 (449)
T ss_dssp ----CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHH
T ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhH
Confidence 477789999999999999999999999977 47999999999999999999999998 278999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 466 (631)
..++.+|...|+++.|......+. ..|+ ....++..|.+.|++++|..+++...... +-
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~---~~ad-----------------~l~~lv~~Yek~G~~eEai~lLe~aL~le-~a 239 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIV---VHAD-----------------ELEELINYYQDRGYFEELITMLEAALGLE-RA 239 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTT---TCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH---hCHh-----------------hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HH
Confidence 999999999999999955443321 2222 23357888999999999999999977554 44
Q ss_pred CHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C---
Q 036072 467 DGLTYNALIKLMKIQ--KMPDEAVRIYKEMVRSGFKP------TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-C--- 534 (631)
Q Consensus 467 ~~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~--- 534 (631)
...+|+-|--+|++- ++..+.++.|.. +.+++| +...|.-++-.|.+.++++.|... |.+.. .
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~ 314 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWK 314 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhh
Confidence 567777777777654 344455555432 122222 345688888999999999988774 33331 1
Q ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 535 ----------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 535 ----------~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
..|...|-..|..|.. ...+++.-+-..+...+ ..+..+..+.+.|+...+..+++.+...+.
T Consensus 315 ~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~l-----d~~r~v~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 315 EGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRL-----DHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGC-----CHHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred hHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcc-----CcHHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 1245566666666652 11222222222221111 134566777888888888888888777776
Q ss_pred CchHHHH
Q 036072 605 FEVSNVL 611 (631)
Q Consensus 605 ~~~~~~l 611 (631)
..+++.+
T Consensus 388 ~~vneal 394 (449)
T 1b89_A 388 KSVNESL 394 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555555
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=2.7e-12 Score=137.74 Aligned_cols=341 Identities=12% Similarity=-0.007 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC-----C-
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEK---------GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY-----K- 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~-----g- 309 (631)
...||.+..++...|++++|++.|++..+. .+....+|+.+..+|...|++++|+..++...+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 566777777777788888888877765431 1224457777777888888888887777766542 1
Q ss_pred -CCcCHHHHHHHHHHHHc--CCChHHHHHHHHHHhcccCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 310 -FKAGVDTINCLLENLGR--SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW---CRVKNLMEAGRVWNEMIDKGFKPDV 383 (631)
Q Consensus 310 -~~~~~~~~~~Ll~~~~~--~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 383 (631)
......++..+..++.. .+++++|...|++..+..+.+...+..+..++ ...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01234455554444443 34677888888777655455555555554443 34466677777777766642 2244
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 036072 384 VAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459 (631)
Q Consensus 384 ~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 459 (631)
.++..+...+.. .|+.++|.+++++..... |+ +..++..+...|...|++++|...+.+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PG--------------VTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--cc--------------HHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 455544444443 356677777777766542 22 3445556677777778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHh-------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 460 EERGCPPDGLTYNALIKLMKI-------------------QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 460 ~~~g~~p~~~t~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
.+.... +..++..+...|.. .+..++|...+++..+.. +.+..++..+...|...|+++
T Consensus 274 l~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 274 LEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred HHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence 765322 44555555444422 122456666666666543 233455667777788888888
Q ss_pred HHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC-----------------------CCCHH
Q 036072 521 MGRKVWDEMIRRGCCPDDN--SYTVLIG-GLISQDRSGEAYKYLEEMLEKGM-----------------------KAPVL 574 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~--t~~~li~-~~~~~g~~~~A~~ll~~m~~~g~-----------------------~p~~~ 574 (631)
+|...|++.++....+... .+..+.. .+...|+.++|+..|++.++... +.+..
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 8888888777654332211 1222222 23356777778777777665321 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
+|..+..+|...|++++|++.+++..+.|.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 788899999999999999999999877664
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1e-10 Score=127.92 Aligned_cols=352 Identities=11% Similarity=0.070 Sum_probs=225.1
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CC--CCHHHHHHHHHHHHH-------
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSIL-GRARQFETMVS----MLEEMGEK-GL--LSMETFKIAMNAFAA------- 291 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~-~~~g~~~~A~~----l~~~m~~~-g~--~~~~~~~~li~~~~~------- 291 (631)
.|.++|+...... |+...|...+... ...|+++.|.+ +|+..... |. .+...|...+.....
T Consensus 64 ~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 64 KVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 3666666554322 4555666555432 33455555444 55544332 22 345566665555443
Q ss_pred --ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-------------HcCCChHHHHHHHHHHh------cc----cCC
Q 036072 292 --AKERKKAVAIFELMNKYKFKAGVDTINCLLENL-------------GRSKLPKEAQLLFDKLK------HR----FTP 346 (631)
Q Consensus 292 --~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~-------------~~~g~~~~A~~l~~~m~------~~----~~p 346 (631)
.|+++.|..+|+..++.........|....... .+.+.+..|..++..+. +. ++|
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 566777777777776631111122332221110 12234555655555421 11 233
Q ss_pred C--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH---
Q 036072 347 N--------LTTYTVLLGGWCRV----KNL----MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-------IGKRS--- 400 (631)
Q Consensus 347 ~--------~~~y~~Li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-------~g~~~--- 400 (631)
+ ...|...+...... ++. +.|..+|++.... .+-+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 2 23444444332221 122 3566677777664 23356677777776665 67776
Q ss_pred ----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 036072 401 ----DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYNAL 474 (631)
Q Consensus 401 ----~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~l 474 (631)
+|..+|++..+. +.|+ +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..+
T Consensus 300 ~~~~~A~~~~~~Al~~-~~p~--------------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 362 (530)
T 2ooe_A 300 LFSDEAANIYERAIST-LLKK--------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQY 362 (530)
T ss_dssp HHHHHHHHHHHHHTTT-TCSS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-hCcc--------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHH
Confidence 788888877652 2344 4566777888888999999999999999985 343 3578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS-YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+..+.+.|+.++|.++|++..+.. ..+...|...... +...|+.++|..+|+..++... -+...|..++..+.+.|+
T Consensus 363 ~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 363 MKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCC
Confidence 888899999999999999999753 2233333332222 3468999999999999987632 268899999999999999
Q ss_pred HHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 554 SGEAYKYLEEMLEKG-MKAP--VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 554 ~~~A~~ll~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.++|..+|++....+ ..|+ ...|..++......|+.+.+.++.+++.+
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999874 2332 45788889989999999999999988865
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.1e-12 Score=125.97 Aligned_cols=221 Identities=11% Similarity=0.066 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC---CC----hhhHHH
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PN----LTTYTV 353 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~----~~~y~~ 353 (631)
.+..+...+...|++++|+..|+.+.+.. .+..++..+..+|...|++++|...+++..+..+ ++ ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444555555555555555555555444 4445555555555555555555555555433211 11 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~ 433 (631)
+...+.+.|++++|...|++..+. .|+. ..+.+.|++++|.+.++.+... .|+ +.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~--------------~~ 139 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPE--------------KA 139 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHH--------------HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--Ccc--------------hH
Confidence 555555555555555555555543 2221 2233344455555555554442 111 11
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+...|++++|...|++..+... .+...|..+...|...|++++|...++++.+.. +.+...+..+..+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 2233334444444444444444444443321 133444444444444444444444444444332 12233444444444
Q ss_pred HHcCCHHHHHHHHHHHH
Q 036072 514 FQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~ 530 (631)
...|++++|...|++..
T Consensus 218 ~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 218 IAVKEYASALETLDAAR 234 (258)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.5e-12 Score=124.39 Aligned_cols=225 Identities=11% Similarity=0.034 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF--KPD----VVAHN 387 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~ty~ 387 (631)
...+..+...+...|++++|..+|++..+.. .+..+|..+...+...|++++|...+++..+... .++ ..+|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455666666677777777777777765544 5666677777777777777777777776665311 111 35566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 467 (631)
.+...+...|++++|.+.|+.+.+.. |+.. .+...|++++|...++.+..... .+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~~-~~ 138 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD----------------------ILTKLRNAEKELKKAEAEAYVNP-EK 138 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH----------------------HHHHHHHHHHHHHHHHHHHHCCH-HH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chhH----------------------HHHHHhHHHHHHHHHHHHHHcCc-ch
Confidence 66666666677777766666666532 2211 12223455666666666555321 12
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 547 (631)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+.... +...|..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 216 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHH
Confidence 3445555555556666666666666555532 224455555555555666666666666555554221 34555555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 036072 548 LISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~ 566 (631)
+...|++++|.+.+++..+
T Consensus 217 ~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 217 QIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=2.2e-12 Score=123.66 Aligned_cols=200 Identities=7% Similarity=-0.047 Sum_probs=166.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
+++...|..+...+.+.|++++|...|++..+..+.+...+..+..++...|++++|+..|+...+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35667888999999999999999999999999998899999999999999999999999999999876 56788899999
Q ss_pred HHHHcC-----------CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 322 ENLGRS-----------KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 322 ~~~~~~-----------g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
.++... |++++|...|++..+..+.+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 999999 999999999999988767788899999999999999999999999999987 6889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
.+|...|++++|+..|+...+. .|+ +..++..+...+.+.|++++|...|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APK--------------DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STT--------------CHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCC--------------ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999885 344 45566777888999999999999888754
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.3e-10 Score=114.99 Aligned_cols=225 Identities=8% Similarity=-0.073 Sum_probs=147.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
+..++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555666666666666666666666652 234555556666666 666666666666665543
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 036072 423 IMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEM 494 (631)
Q Consensus 423 ~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m 494 (631)
+..++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++.
T Consensus 73 ---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 ---------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 12233344455555 667777777777666653 55666666677776 77777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 036072 495 VRSGFKPTIHTYNMIMKSYFQ----TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLE 566 (631)
Q Consensus 495 ~~~g~~p~~~t~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~ 566 (631)
.+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 7754 45566667777776 777777777777777653 45666677777777 7777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 036072 567 KGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 567 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 604 (631)
.+ +...+..+...|.. .+++++|.+++++..+.|.
T Consensus 215 ~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 215 LE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 64 25566677777777 7777778777777776664
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=6.6e-12 Score=120.25 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=85.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ-----------KMPDEAVRIYKEMVRSGFKPTIH 504 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ 504 (631)
+..+...+.+.|++++|...|++..+... -+...+..+...+... |++++|+..|++..+.. +-+..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~ 119 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAP 119 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHH
Confidence 33334444444444444444444443321 1334444444444444 66777777777666642 22455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 584 (631)
.+..+..+|...|++++|...|++..+.. .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 66666667777777777777777776655 466666777777777777777777777776643 334556666777777
Q ss_pred hcCCHHHHHHHHHHH
Q 036072 585 RAGRSYVLDELAQKM 599 (631)
Q Consensus 585 ~~g~~~~A~~l~~~m 599 (631)
+.|++++|.+.+++.
T Consensus 197 ~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 197 LKGKAEEAARAAALE 211 (217)
T ss_dssp C--------------
T ss_pred HccCHHHHHHHHHHH
Confidence 777777777666654
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=3.1e-11 Score=117.63 Aligned_cols=199 Identities=8% Similarity=-0.050 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 395 (631)
.+..+...+...|++++|...|+++.+..+.+..++..+...|...|++++|.+.|+++.+.. ..+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 344444444555555555555555444333344445555555555555555555555554432 1234444444455555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475 (631)
Q Consensus 396 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 475 (631)
.|++++|.++++++.+.+..|+ +...+..+...|...|++++|...|++..+... .+...+..+.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la 182 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPE--------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMA 182 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHH
Confidence 5555555555554443212222 111222333334444444444444444433321 1233344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 476 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+...|++++|..+++++.+.. ..+...+..+...|...|++++|.++++++.+
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444443321 12333344444444444444444444444433
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.47 E-value=8.6e-10 Score=127.10 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=161.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHH
Confidence 344455566666666666542 11122222222 4556666666666542 4678888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------C
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------N 432 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------~ 432 (631)
+|.+.|.+. -|...|.-++.+|.+.|++++|.++|....+..-.|...+ .+..+|++. +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~fI~~~n 1194 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEFINGPN 1194 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHHHhCCC
Confidence 999888653 3677788889999999999999999887666432222222 233333332 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~ 512 (631)
...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 344555666666777777777777663 25666777777777777777777655 244666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036072 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 585 (631)
|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|.-|...|++
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 77777766666654432 2255666677777777788888887776666543 2333345555555544
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.3e-10 Score=115.11 Aligned_cols=224 Identities=13% Similarity=0.039 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR----VKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
+..++..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445555666666666777777777766554 2345566667777777 777777777777777664 5666777
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 036072 389 MLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEME 460 (631)
Q Consensus 389 li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 460 (631)
+...|.. .+++++|++.|+...+.+ +..++..+...|.. .+++++|...|++..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 7777777 777777777777776653 22334455566666 778888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 036072 461 ERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ----TGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 461 ~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~----~g~~~~A~~~~~~m~~~ 532 (631)
+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...|++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 764 55666777777777 888888888888888764 45677788888888 88889998888888876
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036072 533 GCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g 568 (631)
+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4 36677777788887 888889999988888765
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=3.9e-11 Score=116.87 Aligned_cols=200 Identities=13% Similarity=-0.017 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777777888888888888888877766667777777777788888888888887777654 34566677777777
Q ss_pred HcCCChHHHHHHHHHHhc--ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~--~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 402 (631)
...|++++|..+|+++.+ ..+.+...+..+...+.+.|++++|...|+++.+.. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777665 333345566666777777777777777777766642 22455666666666666777777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 403 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
...++.+.+.. |+ +...+..+...+...|++++|.++++.+.+.
T Consensus 195 ~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQ--------------NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS--CC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cC--------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665532 21 2223334445555556666666666665554
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=2e-11 Score=120.34 Aligned_cols=233 Identities=11% Similarity=0.027 Sum_probs=125.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD--VVAHNIMLEGLL 394 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~ 394 (631)
+......+...|++++|..+|++..+..+.+...+..+...|...|++++|...+++..+.+..++ ..+|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555666666666666665554444455666666666666666666666666655321111 233555666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
..|++++|++.|+...+.. |+ +..++..+...|...|++++|...|++..+.. +.+...+..+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 148 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD--TT--------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYEL 148 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TT--------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC--cc--------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHH
Confidence 6666666666666665532 21 22344455555666666666666666555441 2234444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN---YEMGRKVWDEMIRRG-CCPD------DNSYTVL 544 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~l 544 (631)
...+...+++++|.+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 423333446666666666666542 2234555555666666665 555666666555421 1112 1345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 036072 545 IGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
...|...|++++|.+.++++.+.
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666666666654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=5.3e-11 Score=113.28 Aligned_cols=127 Identities=9% Similarity=-0.050 Sum_probs=60.5
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 439 LITGFGNR-RRMDIVYDLLKEMEERGCPPD-GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 439 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
+...|... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..+|...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 33444444 444444444444443111121 3344444445555555555555555554432 22344555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555555432212444455555555555555555555555543
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=5.3e-11 Score=127.61 Aligned_cols=321 Identities=12% Similarity=-0.014 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhCCCCcC
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEK--------GLLSMETFKIAMNAFAAA--KERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~~~~~~~~li~~~~~~--g~~~~A~~v~~~m~~~g~~~~ 313 (631)
...+|+.+..+|...|++++|...+++..+. +.....++.....++... +++++|++.|+...+.. +-+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4678999999999999999999999887642 123466777776666665 46899999999999875 445
Q ss_pred HHHHHHHHHH---HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 314 VDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV----KNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 314 ~~~~~~Ll~~---~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
...+..+..+ +...++.++|...+++..+..+.+..++..+...+... +++++|.+.+++..... +.+..++
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 6666555544 44567888899988887765566777777776666554 57889999999988763 3467788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
..+...|...|++++|.+.+++..+.... +...+..+-..|... ...............+..+.|...++...+.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 89999999999999999999999875322 233333222111110 0000000000011112345666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC-----
Q 036072 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH--TYNMIMK-SYFQTGNYEMGRKVWDEMIRRGC----- 534 (631)
Q Consensus 463 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~Li~-~~~~~g~~~~A~~~~~~m~~~g~----- 534 (631)
... +...+..+...|...|++++|+..|++..+....+... .+..+.. .+...|+.++|+..|++..+...
T Consensus 330 ~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 330 NDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp CTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 322 34456667777777788888888887777654332211 1222222 22346777777777766654321
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 535 ------------------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 535 ------------------~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
+.+..+|..+...|...|++++|++.|++.++.+
T Consensus 409 ~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2256788999999999999999999999998865
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=7.3e-11 Score=112.27 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+.|+.+.+.. +.+..++..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44556666666666666666666666666555555566666666666666666666666665543 33455555555555
Q ss_pred HcC-CChHHHHHHHHHHhc--ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 325 GRS-KLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401 (631)
Q Consensus 325 ~~~-g~~~~A~~l~~~m~~--~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 401 (631)
... |++++|...++.+.+ ..+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 666666666655544 222223455555555555555555555555555432 1134445555555555555555
Q ss_pred HHHHHHHHHH
Q 036072 402 AIKLFEVMKA 411 (631)
Q Consensus 402 A~~ll~~m~~ 411 (631)
|.+.++.+.+
T Consensus 166 A~~~~~~~~~ 175 (225)
T 2vq2_A 166 ADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=3.2e-11 Score=125.66 Aligned_cols=248 Identities=8% Similarity=0.065 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-RKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
...|+.+..++.+.|++++|+..+++..+..+-+..+|+.+..++...|+ +++|+..|+.+++.. +-+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45677788888899999999999999999998899999999999999997 999999999999976 5688899999999
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-IGKRSDA 402 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A 402 (631)
+...|++++|+..|+++.+..+.+...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999887777899999999999999999999999999998743 367889999999998 6665777
Q ss_pred -----HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 403 -----IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR--RMDIVYDLLKEMEERGCPPDGLTYNALI 475 (631)
Q Consensus 403 -----~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li 475 (631)
++.++...+. .|+ +..+|+.+...+...| ++++|.+.+.++ +. .+.+...+..+.
T Consensus 255 ~~~~el~~~~~Al~l--~P~--------------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPH--------------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHHHHHHHHH--STT--------------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCC--------------CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 4677776663 343 4455666666666666 567777777776 22 233556666777
Q ss_pred HHHHhcC---------ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 036072 476 KLMKIQK---------MPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 476 ~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~~~t~~~Li~~~ 513 (631)
..|.+.| ..++|+++|+++ .+.. +.....|..+...+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 7776653 246777777776 4432 22334444444433
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=1e-11 Score=120.08 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|++.|+.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 355666666677777777777777777777666666677777777777777777777777776653 3455666666666
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
|...|++++|...++++.+..+.+...+..+...+.+.|++++|...++++.+.. ..+...+..+...+.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666777777776666655545555666666666666666666666666666542 224555555556666666666666
Q ss_pred HHHHHHHH
Q 036072 404 KLFEVMKA 411 (631)
Q Consensus 404 ~ll~~m~~ 411 (631)
+.++.+.+
T Consensus 180 ~~~~~~~~ 187 (243)
T 2q7f_A 180 SQFAAVTE 187 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=4.1e-12 Score=125.38 Aligned_cols=151 Identities=11% Similarity=-0.088 Sum_probs=82.2
Q ss_pred cCChhHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLL----SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~----~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
.|++++|+..|+++.+.... +..++..+...+...|++++|++.|+.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666655321 23355566666666666666666666665543 33455556666666666666666
Q ss_pred HHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 334 ~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
...|++..+..+.+..++..+...|.+.|++++|...|+++.+. .|+...+...+..+...|++++|...+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666655544444555555666666666666666666655553 23322333333333444555555555544433
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=3e-11 Score=119.10 Aligned_cols=245 Identities=9% Similarity=0.014 Sum_probs=122.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.....+...|++++|+..|++..+..+.+..++..+..++...|++++|++.|+...+.+ .+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~------------- 72 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA------------- 72 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC-------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH-------------
Confidence 344445555555555555555555444444444444445555555555555555554421 11111
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
....|..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|++.+++.
T Consensus 73 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 -----------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred -----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 01124444555555555555555555544432 113344555555555555555555555554
Q ss_pred HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH-HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hh
Q 036072 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI-TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM---PD 485 (631)
Q Consensus 410 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---~~ 485 (631)
.+. .|+ +..+|..+. ..|. .+++++|.+.|++..+... .+...+..+...+...++ .+
T Consensus 135 l~~--~~~--------------~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 135 IRP--TTT--------------DPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp CCS--SCC--------------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSC
T ss_pred hhc--CCC--------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhH
Confidence 443 222 122222333 2222 2356666666666555422 234555555666666666 66
Q ss_pred HHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSG-FKPT------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 486 ~A~~l~~~m~~~g-~~p~------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+|...++++.+.. -.|+ ..+|..+...|...|++++|...|+++.+.... |...+..+..
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~ 263 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKM 263 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhh
Confidence 6777776666421 1122 246667777777788888888888877765422 4444444433
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.42 E-value=2.1e-09 Score=123.89 Aligned_cols=288 Identities=10% Similarity=-0.000 Sum_probs=177.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~ 330 (631)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 5555555666666666666542 11111122211 344445554444433 1234444455555555555
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------CCCHH
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF--------------------------KPDVV 384 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~--------------------------~p~~~ 384 (631)
++|...|.+. .|...|..++.+|.+.|++++|.+.|....+..- .++..
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a 1196 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA 1196 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH
Confidence 5555554332 1344444455555555555555555544443321 12333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
.|..+...|...|++++|..+|.. ...|..+...|.+.|++++|.+.+++.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~k------------------------A~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNN------------------------VSNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHh------------------------hhHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 344444444444444444444443 346788899999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 465 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
-+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... .-....|+-|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 36789999999999999999998876643 4466778899999999999999999998887654 3355677777
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 036072 545 IGGLISQ--DRSGEAYKYLEEMLEKGMKA------PVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 545 i~~~~~~--g~~~~A~~ll~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
...|.+. ++..++.++|..-.. +++ +...|..++..|.+.|+++.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777753 445556665553322 222 35569999999999999999884
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=2e-11 Score=118.03 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
|..+...+...|++++|..+|+++.+..+.+..++..+...+.+.|++++|...|+++.+.. ..+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33344444444444444444444444333344444444444444444444444444444431 11334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 036072 397 GKRSDAIKLFEVMKA 411 (631)
Q Consensus 397 g~~~~A~~ll~~m~~ 411 (631)
|++++|.+.++.+.+
T Consensus 105 ~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 105 EMYKEAKDMFEKALR 119 (243)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444433
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=5.5e-12 Score=124.48 Aligned_cols=247 Identities=11% Similarity=0.015 Sum_probs=170.0
Q ss_pred HccCHHHHHHHHHHHHhCCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~---~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A 367 (631)
..|++++|++.|+.+.+... +.+..++..+...|...|++++|...|+++.+..+.+..+|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45788999999999988632 224677888899999999999999999998877677888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC
Q 036072 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g 447 (631)
...|++..+.. +.+..++..+...|...|++++|.+.++.+.+.. |+...... ++..+...|
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~---------------~~~~~~~~~ 158 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSL---------------WLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHH---------------HHHHHHHhc
Confidence 99999998863 2357788889999999999999999999988753 33221111 122224457
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP---TIHTYNMIMKSYFQTGNYEMGRK 524 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~Li~~~~~~g~~~~A~~ 524 (631)
++++|...+....... +++...+. ++..+...++.++|...+.++.+..... +..++..+..+|...|++++|..
T Consensus 159 ~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888887766553 22333333 5556667777777777777765432110 13566666777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 525 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
.|+++.+.. |+. +.....++...|++++|++.+
T Consensus 237 ~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 237 LFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 777776542 211 222234455556666665554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=9.1e-11 Score=122.23 Aligned_cols=249 Identities=6% Similarity=-0.013 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL-PKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~-~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
..+|..+...+...|++++|++.|+.+++.. +-+..+|+.+..++...|+ +++|+..|++..+..+.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4467778888889999999999999999875 5678889999999999996 9999999999988777788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 437 (631)
+.+.|++++|+..|+++.+.. .-+...|..+..++.+.|++++|+..++.+.+. .|+ +..+|+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~--------------~~~a~~ 238 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVR--------------NNSVWN 238 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT--------------CHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC--------------CHHHHH
Confidence 999999999999999999863 237788999999999999999999999999885 343 455666
Q ss_pred HHHHHHhc-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 438 CLITGFGN-RRRMDIV-----YDLLKEMEERGCPPDGLTYNALIKLMKIQK--MPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 438 ~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
.+...+.+ .|..++| +..|++..+.... +...|+.+...+...| ++++|++.+.++ +. ...+...+..+
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~L 315 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFL 315 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHH
Confidence 77777777 5554666 4777777665332 5677777777777777 578888888777 32 24456777888
Q ss_pred HHHHHHcC---------CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 036072 510 MKSYFQTG---------NYEMGRKVWDEM-IRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 510 i~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~~t~~~li~~~~ 549 (631)
..+|.+.| ..++|.++|+++ .+... .....|..+...+.
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 88887764 257888888887 55421 13455555555444
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.8e-11 Score=127.86 Aligned_cols=278 Identities=12% Similarity=0.007 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhC----CCC-cC
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM----ETFKIAMNAFAAAKERKKAVAIFELMNKY----KFK-AG 313 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g~~-~~ 313 (631)
.....+......+...|++++|...|+++.+.++.+. .++..+...+...|++++|...++...+. +-. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3466777788889999999999999999988776553 57888889999999999999999887543 211 22
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccC--CC----hhhHHHHHHHHHhcCC--------------------HHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFT--PN----LTTYTVLLGGWCRVKN--------------------LMEA 367 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~--p~----~~~y~~Li~~~~~~g~--------------------~~~A 367 (631)
..++..+...|...|++++|...+++..+..+ .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55677788889999999999999988754211 12 4478888889999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 368 GRVWNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 368 ~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
...+++..+. +..+ ...++..+...|...|++++|.+.+++..+... .++... ...++..+..
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~la~ 235 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-----------ERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH-----------HHHHHHHHHH
Confidence 9888876542 1111 134677788888889999999999888765311 111111 1234566677
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKP-TIHTYNMIMK 511 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Li~ 511 (631)
.|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+. +..+ ...++..+..
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 777778888887777766532100 11 335555666666666666666666665532 1000 1334555556
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~ 531 (631)
+|...|++++|...+++..+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=2.2e-11 Score=127.96 Aligned_cols=276 Identities=11% Similarity=-0.024 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhC----C-CCcCHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM----ETFKIAMNAFAAAKERKKAVAIFELMNKY----K-FKAGVD 315 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g-~~~~~~ 315 (631)
...+..+...+...|++++|...|+++.+.+..+. .++..+...|...|++++|++.|+...+. + ......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455667778899999999999999998876554 47888899999999999999999888764 1 123456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcc------cCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKN-----------------LMEAGRVWN 372 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~p~~~~y~~Li~~~~~~g~-----------------~~~A~~l~~ 372 (631)
++..+...|...|++++|...+++..+. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999999986542 12234578888999999999 999999888
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 373 EMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 373 ~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
+..+. +..+ ...++..+...|...|++++|++.+++..+.... .+... ...++..+...|...
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA-----------ERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH-----------HHHHHHHHHHHHHHC
Confidence 76542 1111 2346777888889999999999999887653110 01100 123455667777777
Q ss_pred CCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHc
Q 036072 447 RRMDIVYDLLKEMEERGCP-P----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GF-KPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~-p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~Li~~~~~~ 516 (631)
|++++|...+++..+.... . ...++..+...|...|++++|...+++..+. +. .....++..+..+|...
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 7777777777766542100 0 1234555555566666666666666555432 00 00122444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIR 531 (631)
Q Consensus 517 g~~~~A~~~~~~m~~ 531 (631)
|++++|...|++..+
T Consensus 357 g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 357 GGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=2.3e-11 Score=123.10 Aligned_cols=204 Identities=13% Similarity=0.001 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhC----CC-CcCHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLS----METFKIAMNAFAAAKERKKAVAIFELMNKY----KF-KAGVDT 316 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~----~~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g~-~~~~~~ 316 (631)
..+......+...|++++|...|+++.+..+.+ ..++..+...+...|++++|++.++...+. +. .....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344555667788899999999999988876655 357788888999999999999998887553 11 123556
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhccc--CCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRF--TPN----LTTYTVLLGGWCRVKN--------------------LMEAGRV 370 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~p~----~~~y~~Li~~~~~~g~--------------------~~~A~~l 370 (631)
+..+...|...|++++|...+++..+.. .++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 7778888888999999999888865421 112 3377788888888888 8888888
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 371 WNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 371 ~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
+++..+. +..+ ...++..+...+...|++++|.+.+++..+.... ++... ...++..+...|.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-----------ERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH-----------HHHHHHHHHHHHH
Confidence 8776532 1111 1345667777788888888888888776542100 01000 1123445555666
Q ss_pred ccCCHHHHHHHHHHHH
Q 036072 445 NRRRMDIVYDLLKEME 460 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~ 460 (631)
..|++++|...+++..
T Consensus 235 ~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 235 FLGEFETASEYYKKTL 250 (338)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666544
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=4e-11 Score=126.00 Aligned_cols=274 Identities=11% Similarity=-0.009 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHhcc------cCCChhh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTT 350 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~p~~~~ 350 (631)
.+..+...+...|++++|+..|+.+.+.. +.+. ..+..+...|...|++++|...+++..+. .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 45566778899999999999999999874 2333 47888889999999999999999987542 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDK----GF-KPDVVAHNIMLEGLLKIGK-----------------RSDAIKLFEV 408 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~ty~~li~~~~~~g~-----------------~~~A~~ll~~ 408 (631)
+..+...|...|++++|...|++..+. +- .....++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999987754 11 1124577888889999999 8888887776
Q ss_pred HHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcC
Q 036072 409 MKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQK 482 (631)
Q Consensus 409 m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g 482 (631)
..+.... .+... ...++..+...|...|++++|...+++..+.... .+ ...+..+...|...|
T Consensus 209 al~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 209 NLKLMRDLGDRGA-----------QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHTCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 5432000 00000 1234555666677777777777777665432100 01 124555555566666
Q ss_pred ChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcC
Q 036072 483 MPDEAVRIYKEMVRSGF----K-PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 483 ~~~~A~~l~~~m~~~g~----~-p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g 552 (631)
++++|...+++..+... . ....++..+..+|...|++++|...+++..+. +. .....++..+...|...|
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 66666666655543210 0 01334455555555555555555555554432 00 001223444444444445
Q ss_pred CHHHHHHHHHHHHH
Q 036072 553 RSGEAYKYLEEMLE 566 (631)
Q Consensus 553 ~~~~A~~ll~~m~~ 566 (631)
++++|.+++++..+
T Consensus 358 ~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 358 GHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555544444443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=2.4e-11 Score=122.90 Aligned_cols=274 Identities=12% Similarity=-0.027 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHhcc------cCCChhh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTT 350 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~p~~~~ 350 (631)
.+......+...|++++|+..|+.+.+.. +.+ ...+..+...|...|++++|...+++..+. .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45556778889999999999999999874 233 467888899999999999999999986432 1123557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPD----VVAHNIMLEGLLKIGK--------------------RSDAIKL 405 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~--------------------~~~A~~l 405 (631)
+..+...|...|++++|...+++..+... ..+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999998765311 112 3477888889999999 8888888
Q ss_pred HHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 036072 406 FEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPD----GLTYNALIKLMK 479 (631)
Q Consensus 406 l~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~ 479 (631)
+++..+.... .+... ...++..+...|...|++++|...+++..+... .++ ..++..+...+.
T Consensus 166 ~~~a~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 166 YEENLSLVTALGDRAA-----------QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHH-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 8776542000 01100 123455666777777888888877776653210 011 124555555666
Q ss_pred hcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRS----GFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPDDNSYTVLIGGLI 549 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~ 549 (631)
..|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+. +. .....++..+...|.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 666666666666655432 1000 0334455555555666666666655555432 00 001223444445555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~ 566 (631)
..|++++|...++++.+
T Consensus 315 ~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHH
Confidence 55555555555555443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=7.4e-11 Score=123.24 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK----GFKP-DV 383 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~----~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 383 (631)
....+..+...+...|++++|...|++..+..+.+ ..+|..+...|...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34444455555666666666666666655432223 245666666677777777777776665432 1111 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC--------------
Q 036072 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR-------------- 448 (631)
Q Consensus 384 ~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~-------------- 448 (631)
.++..+...|...|++++|...+++..+.... .+... ...++..+...|...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-----------EARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-----------hHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 45666777778888888888888776543100 11110 13356667788888888
Q ss_pred ------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 036072 449 ------MDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPT----IHTYNMIMKS 512 (631)
Q Consensus 449 ------~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~Li~~ 512 (631)
+++|.+.+.+..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+..+
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999998876532 1111 234678888899999999999999998875310 112 3478889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 036072 513 YFQTGNYEMGRKVWDEMIRRGCC-PD----DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAP----VLDYNKFAAD 582 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~----~~~~~~li~~ 582 (631)
|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+... ..+ ...+..+..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999988753111 12 56788889999999999999999999875311 112 4568889999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 036072 583 LSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 583 ~~~~g~~~~A~~l~~~m~~ 601 (631)
|...|++++|.+.+++...
T Consensus 317 ~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999987543
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=2.1e-09 Score=108.59 Aligned_cols=183 Identities=8% Similarity=0.058 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VV-AHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 331 ~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555555554442 2223345555555555555555555555555542 222 22 45555555555555555555555
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 036072 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG-FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 408 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 486 (631)
...+.... +... |...... +...|++++|..+|+...+... -+...|..++..+.+.|+.++
T Consensus 159 ~a~~~~p~-~~~~---------------~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~ 221 (308)
T 2ond_A 159 KAREDART-RHHV---------------YVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHTSTTC-CTHH---------------HHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhcCCC-CHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHH
Confidence 55543211 1111 1111111 1124666666666666655422 255666666666777777777
Q ss_pred HHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 487 AVRIYKEMVRSG-FKP--TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 487 A~~l~~~m~~~g-~~p--~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
|..+|++..+.. +.| ....|..++..+...|+.+.|..+++++.+.
T Consensus 222 A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777652 333 3556666677777777777777777776654
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=7.5e-10 Score=102.31 Aligned_cols=171 Identities=11% Similarity=0.002 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+..+|..+-..+.+.|++++|+..|++..+..+-+..++..+..++...|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 478899999999999999999999999999988899999999999999999999999999998875 5567788888889
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
+...++++.|...+.+.....+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999887777788999999999999999999999999999863 346788999999999999999999
Q ss_pred HHHHHHHHcCCCCcH
Q 036072 404 KLFEVMKAKGPSPNV 418 (631)
Q Consensus 404 ~ll~~m~~~g~~p~~ 418 (631)
+.|++..+. .|+.
T Consensus 162 ~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHT--THHH
T ss_pred HHHHHHHhC--CccC
Confidence 999999874 4543
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=5.6e-10 Score=119.39 Aligned_cols=340 Identities=10% Similarity=-0.010 Sum_probs=206.9
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-----CHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF---ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-----ERKKA 298 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~---~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-----~~~~A 298 (631)
.|.+.|....+. | +...+..+-..|...|+. ++|...|++..+. ++..+..+...+...+ +.++|
T Consensus 21 ~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 21 TAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 466666665432 2 233444455555556666 8888888888755 5555666666454444 77889
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 299 ~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+..|+...+.|.. + .+..|...|...+..+.+.+.++.+... -..+...+..|...|...+.++++......+.+.
T Consensus 94 ~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 94 ESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999998887632 2 5666777776655444333333333221 1124567777888888888655555443333332
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc----CCHH
Q 036072 378 GFKPDVVAHNIMLEGLLKIG---KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR----RRMD 450 (631)
Q Consensus 378 g~~p~~~ty~~li~~~~~~g---~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~----g~~~ 450 (631)
-...+...+..|...|...| +.++|++.|+...+.|..... .+..|...|... ++++
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~----------------~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ----------------RVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH----------------HHHHHHHHHTCGGGSSCCHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH----------------HHHHHHHHHhCCCCCCCCHH
Confidence 12223337778888888888 889999999988887754222 122334444433 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHH
Q 036072 451 IVYDLLKEMEERGCPPDGLTYNALIKL-M--KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-----NYEMG 522 (631)
Q Consensus 451 ~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g-----~~~~A 522 (631)
+|.+.|+... .| +...+..|-.. + ...++.++|.++|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999877 33 44555555555 3 45789999999999998877 5677777777777 55 89999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDE 594 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 594 (631)
...|++.. .| +...+..|...|.. ..+.++|..+|++..+.|. ...+..|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999887 43 66777777766665 3488999999999988873 2345566666654 457888999
Q ss_pred HHHHHHhcCCCch
Q 036072 595 LAQKMRFSGKFEV 607 (631)
Q Consensus 595 l~~~m~~~g~~~~ 607 (631)
++++....|....
T Consensus 380 ~~~~A~~~g~~~a 392 (452)
T 3e4b_A 380 FSQLAKAQDTPEA 392 (452)
T ss_dssp HHHHHHTTCCHHH
T ss_pred HHHHHHHCCCHHH
Confidence 9988888776433
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=4.5e-09 Score=106.13 Aligned_cols=219 Identities=9% Similarity=0.028 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCR-------VKNL-------MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~-------~g~~-------~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777776666677778777777653 4664 67777777777631122445677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA-VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 475 (631)
|++++|.++|+++.+. .|+ +.. +|..++..+.+.|++++|..+|++..+... .+...|....
T Consensus 113 ~~~~~A~~~~~~al~~--~p~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a 175 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDI--------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAA 175 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSS--------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--ccc--------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 7777777777777653 332 111 344555555566666666666666665432 2233333222
Q ss_pred HHHH-hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHc
Q 036072 476 KLMK-IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCP--DDNSYTVLIGGLISQ 551 (631)
Q Consensus 476 ~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~t~~~li~~~~~~ 551 (631)
.... ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 2211 2466666666666665531 2245555556666666666666666666666542 222 344555556555566
Q ss_pred CCHHHHHHHHHHHHHC
Q 036072 552 DRSGEAYKYLEEMLEK 567 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~ 567 (631)
|+.++|..+++++.+.
T Consensus 255 g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 255 GDLASILKVEKRRFTA 270 (308)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=6.1e-11 Score=118.97 Aligned_cols=240 Identities=17% Similarity=0.145 Sum_probs=163.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------G 413 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g 413 (631)
+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777888888888888888888877763 22234566777888888889999999888887653 1
Q ss_pred CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhH
Q 036072 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER------GCPP-DGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 414 ~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~ 486 (631)
..|. ...++..+...|...|++++|...+++..+. +-.| ....+..+...+...|++++
T Consensus 106 ~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 106 DHPA--------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp TCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CChH--------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 1111 2345677888999999999999999988764 2222 34567888889999999999
Q ss_pred HHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-------HHHHHHHH
Q 036072 487 AVRIYKEMVRS------GFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-------GCCPD-------DNSYTVLI 545 (631)
Q Consensus 487 A~~l~~~m~~~------g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-------~~t~~~li 545 (631)
|+++++++.+. +..| ...++..+..+|...|++++|...++++.+. ...+. ...+..+.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999998864 2122 3567888999999999999999999998863 11111 12222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..+...+.+.+|...++...... .....++..+..+|.+.|++++|.+++++...
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444556666666676665432 23456688999999999999999999988754
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=6.3e-11 Score=118.86 Aligned_cols=132 Identities=15% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcc--------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHR--------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK------GFKP 381 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p 381 (631)
++..+...|...|++++|...+++..+. .+....++..+...|...|++++|...|++..+. +..|
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444444445555554444443221 1122445666667777777777777777766643 1112
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHH
Q 036072 382 -DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454 (631)
Q Consensus 382 -~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (631)
....+..+...+...|++++|+++++++.+. +..|. ...++..+...|...|++++|..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN--------------VAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH--------------HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455777778888888888888888887653 11221 23456677888888999999999
Q ss_pred HHHHHHH
Q 036072 455 LLKEMEE 461 (631)
Q Consensus 455 l~~~m~~ 461 (631)
.++++.+
T Consensus 217 ~~~~al~ 223 (311)
T 3nf1_A 217 LYKEILT 223 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=7.6e-10 Score=115.42 Aligned_cols=234 Identities=9% Similarity=-0.022 Sum_probs=172.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-Cc-HHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PN-VRSYTIMIW 426 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~-~~~~~~li~ 426 (631)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|++.+.+..+.-.. ++ ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR------ 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH------
Confidence 556677889999999999888763 1111 2457788888999999999999999887753111 11 110
Q ss_pred HHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 036072 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRS---- 497 (631)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---- 497 (631)
...+++.+...|...|++++|.+.|.+..+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 183 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 183 -----LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 2346777889999999999999999887643111 12 247888889999999999999999998872
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCC
Q 036072 498 GF-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GCCPDDNSYTVLIGGLISQDR---SGEAYKYLEEMLEKGM 569 (631)
Q Consensus 498 g~-~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~---~~~A~~ll~~m~~~g~ 569 (631)
+. .....++..+..+|...|++++|...+++..+. +-......+..+...+...|+ .++|+.++++. +.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~ 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence 33 334678899999999999999999999988753 111122335667777788888 77777777765 32
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 570 KAP-VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 570 ~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.++ ...+..+...|...|++++|.+.+++...
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 332 34577899999999999999999998764
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=2.7e-09 Score=98.53 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
++.+|..+...|...|++++|.+.|++..+.... +...+..+..+|.+.|++++|...+....... .-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4667889999999999999999999999887543 77889999999999999999999999998764 346777888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (631)
.+...++++.|...+.+..+.... +...+..+...|...|++++|++.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999886443 78889999999999999999999999999864 4567889999999999999999
Q ss_pred HHHHHHHHHhcC
Q 036072 592 LDELAQKMRFSG 603 (631)
Q Consensus 592 A~~l~~~m~~~g 603 (631)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999886543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=9.3e-10 Score=114.76 Aligned_cols=296 Identities=8% Similarity=-0.031 Sum_probs=205.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCC---CCHH--HHHHHHHH--HHHccCHHHHH-----------HHHHHHHhCCCCcCHHH
Q 036072 255 LGRARQFETMVSMLEEMGEKGL---LSME--TFKIAMNA--FAAAKERKKAV-----------AIFELMNKYKFKAGVDT 316 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~---~~~~--~~~~li~~--~~~~g~~~~A~-----------~v~~~m~~~g~~~~~~~ 316 (631)
+.+.+++++|..+++++.+.-. .+.. .|-.++.. ....+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 3467899999999998865421 2333 33333322 22234444444 6666665432 11111
Q ss_pred ------HHHHHHHHHcCCChHHHHHHHHHHhcc---cCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--
Q 036072 317 ------INCLLENLGRSKLPKEAQLLFDKLKHR---FTP---NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KP-- 381 (631)
Q Consensus 317 ------~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~p---~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p-- 381 (631)
+......+...|++++|...|++..+. ... ...+|..+...|...|++++|...+++..+.-- .+
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556678889999999999997542 221 245788999999999999999999998875311 11
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036072 382 ---DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457 (631)
Q Consensus 382 ---~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 457 (631)
...+++.+...|...|++++|++.+++..+.... .+... ...++..+...|...|++++|...|+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL-----------MGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2457888889999999999999999888753111 11111 12457778899999999999999999
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 036072 458 EMEER----GC-PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKPTIHTYNMIMKSYFQTGN---YEMGRKV 525 (631)
Q Consensus 458 ~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~Li~~~~~~g~---~~~A~~~ 525 (631)
+..+. +. +....++..+...|.+.|++++|...+++..+. +-......+..+...|...|+ +++|..+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88762 23 334667888999999999999999999988753 212223345677888888898 7777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 526 WDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 526 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+++. +..+ ....+..+...|...|++++|.+++++..+
T Consensus 329 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 329 LESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7765 2222 244677888999999999999999998875
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=4.8e-10 Score=120.72 Aligned_cols=214 Identities=8% Similarity=-0.028 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh-HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 295 ~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~-~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
++++++.++...... +.+...+..+...|...|++ ++|...|++..+..+.+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566666555543 45777888888888888898 9999998888776666788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 374 MIDKGFKPDVVAHNIMLEGLLKI---------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 374 m~~~g~~p~~~ty~~li~~~~~~---------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
..+. .|+...+..+...|... |++++|++.|++..+. .|+ +...|..+..+|.
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~--------------~~~~~~~lg~~~~ 224 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL--------------DGRSWYILGNAYL 224 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHH
Confidence 9875 47778888888999998 9999999999999875 343 4445566666666
Q ss_pred cc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 445 NR--------RRMDIVYDLLKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 445 ~~--------g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.. |++++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++.
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 66 7778888888777764220 256677777777777777777777777776643 234556666677777
Q ss_pred HcCCHHHHHHHHHH
Q 036072 515 QTGNYEMGRKVWDE 528 (631)
Q Consensus 515 ~~g~~~~A~~~~~~ 528 (631)
..|++++|.+.+..
T Consensus 304 ~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 304 FLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 77777766665443
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.21 E-value=9.7e-10 Score=117.53 Aligned_cols=316 Identities=12% Similarity=0.031 Sum_probs=207.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER---KKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~---~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
+...+.+.|++++|..+|++..+.|.+ ..+..+...|...|+. ++|++.|+...+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--TGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 566777889999999999999887643 3444555666667777 8999999988864 566677777755555
Q ss_pred C-----ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 328 K-----LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM---EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 328 g-----~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+ +.++|...|++..+.. +...+..|...|...+..+ ++.+.+......|. ...+..+...|...+.+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 4 7789999999876532 3447888888888776544 34555555555543 44566677777777755
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR---RMDIVYDLLKEMEERGCPPDGLTYNALIK 476 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 476 (631)
+++......+.+.-... ++..+..|...|...| +.++|++.|+...+.|.. +...+..|..
T Consensus 158 ~~~~~~a~~~~~~a~~~---------------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT---------------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp GGGHHHHHHHHHHHTTT---------------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 55444433332211111 2234555677777788 999999999999988754 5555556666
Q ss_pred HHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 477 LMKIQ----KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS-Y--FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 477 ~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.|... ++.++|..+|++.. .| +...+..|... | ...+++++|.+.|++..+.| +...+..|...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 66544 69999999999987 43 45566666666 3 45899999999999999887 7778888887777
Q ss_pred HcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 036072 550 SQD-----RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 550 ~~g-----~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 605 (631)
.| ++++|.++|++.. .| +...+..|...|.. ..+.++|.+++++.-+.|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 55 9999999999988 44 56677778877776 34899999999998887764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=6.9e-10 Score=119.44 Aligned_cols=158 Identities=9% Similarity=-0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ---------KMPDEAVRIYKEMVRSGFKPTIHTY 506 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~ 506 (631)
|..+...|...|++++|.+.|++..+. .|+...+..+...|... |++++|+..|++..+.. +-+...|
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 216 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSW 216 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 333444444444444444444444433 23334444444444444 55555555555555432 2234555
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 507 NMIMKSYFQT--------GNYEMGRKVWDEMIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 507 ~~Li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
..+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~ 295 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5555555555 5566666666665554220 155556666666666666666666666665542 2234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 036072 577 NKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~~ 597 (631)
..+..++...|++++|.+.+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 555666666666665555443
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=2.5e-09 Score=97.90 Aligned_cols=166 Identities=12% Similarity=0.050 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...++++.+..+.+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999999988777788899999999999999999999999998874 55788899999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
...|++++|...++++.+..+.+...+..+...+...|++++|...++++.+.. ..+...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887777788899999999999999999999999998864 3467889999999999999999999
Q ss_pred HHHHHHHc
Q 036072 405 LFEVMKAK 412 (631)
Q Consensus 405 ll~~m~~~ 412 (631)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=2e-07 Score=103.72 Aligned_cols=168 Identities=14% Similarity=0.053 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCC
Q 036072 432 NAAVYTCLITGFGNRRRMDIVY-DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG---------FKP 501 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p 501 (631)
....|-..+..+...|+.++|. ++|+..... ++.+...|-..+....+.|++++|.++|+.+.+.. -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4445555555555555555564 666655543 23344445555555556666666666666655421 012
Q ss_pred C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 036072 502 T------------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQ-DRSGEAYKYLEEMLEK 567 (631)
Q Consensus 502 ~------------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~-g~~~~A~~ll~~m~~~ 567 (631)
+ ..+|...+....+.|+.+.|..+|....+. +.. ....|...+..-.+. ++.+.|.++|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 224555555555556666666666666543 111 122222221111222 3356666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
++-+...+..++......|+.+.|..+|++....
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2334444555555555566666666666655443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=1.7e-08 Score=104.61 Aligned_cols=270 Identities=12% Similarity=-0.002 Sum_probs=163.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCC----hhhHHHHHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPN----LTTYTVLLG 356 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~----~~~y~~Li~ 356 (631)
..+...|++++|...++......-..+. .+++.+...+...|++++|...+++.... -..+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444555666666665555543211121 13444555566666666666666665331 1111 123556667
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 036072 357 GWCRVKNLMEAGRVWNEMIDK----GFK--P-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429 (631)
Q Consensus 357 ~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 429 (631)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++............
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 172 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--------- 172 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG---------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH---------
Confidence 777778888888777776642 221 2 234555667777888888888888887765432211100
Q ss_pred hcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCC--
Q 036072 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYN----ALIKLMKIQKMPDEAVRIYKEMVRSGFKP-- 501 (631)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p-- 501 (631)
....+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+
T Consensus 173 --~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 173 --QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp --GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 112355566777788888888888887764311111 11111 23344778899999999988876543211
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 502 -TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 502 -~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1335667788888999999999999887643 222222 25666677788899999999999887653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=2.7e-08 Score=102.99 Aligned_cols=275 Identities=8% Similarity=-0.015 Sum_probs=196.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CHH----HHHHHHHHHHHccCHHHHHHHHHHHHhCCC-CcC----HHHH
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SME----TFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAG----VDTI 317 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~----~~~~li~~~~~~g~~~~A~~v~~~m~~~g~-~~~----~~~~ 317 (631)
+......+...|++++|...+++....... +.. ++..+...+...|++++|.+.++...+..- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334445566789999999999998776543 222 566777888899999999999988875311 111 2335
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcc-----cC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHR-----FT--P-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK----PDVVA 385 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~--p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t 385 (631)
..+...+...|++++|...+++..+. .. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778889999999999999987542 11 2 2346677888999999999999999998764221 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV-RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
|..+...+...|++++|...+++.......++. ..+... .....+..+...|++++|...+++..+...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN----------ANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH----------HHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 778888999999999999999988754222111 111110 111234457788999999999988765432
Q ss_pred CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 465 PP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKPTI-HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 465 ~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
.+ ....+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++....
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 21 1335677788899999999999999987642 322233 36677788899999999999999988753
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=7.4e-09 Score=107.73 Aligned_cols=235 Identities=10% Similarity=-0.049 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-Cc-HHHHHHH
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PN-VRSYTIM 424 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~-~~~~~~l 424 (631)
......+...|++++|...|++..+... .++ ..++..+...|...|+++.|...+.+..+.... ++ ...
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~---- 180 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR---- 180 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH----
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh----
Confidence 3445566788999999999998875411 122 456788888999999999999999887753111 11 110
Q ss_pred HHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---
Q 036072 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVR--- 496 (631)
Q Consensus 425 i~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~--- 496 (631)
...+++.+...|...|++++|.+.|.+..+. +-.+ ...++..+...|...|++++|...+++..+
T Consensus 181 -------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 181 -------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2345777888999999999999999887653 1111 134677888899999999999999999887
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC
Q 036072 497 --SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG----CCPDDNSYTVLIGGLISQDR---SGEAYKYLEEMLEK 567 (631)
Q Consensus 497 --~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~---~~~A~~ll~~m~~~ 567 (631)
.. +....++..+..+|.+.|++++|...+++..+.. -......+..+...+...++ .++|+.++++ .
T Consensus 254 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~ 329 (378)
T 3q15_A 254 EKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---K 329 (378)
T ss_dssp HHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---T
T ss_pred hhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---C
Confidence 33 3337788999999999999999999999988742 12123455666666667788 7777777766 3
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 568 GMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 568 g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
+..++ ...+..+...|...|++++|.+.+++...
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22222 34567899999999999999999998754
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=7.4e-09 Score=94.69 Aligned_cols=164 Identities=13% Similarity=-0.005 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788888999999999999887653 2367889999999999999999999999998863 44678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036072 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (631)
...|++++|.+.++++.+... .+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988643 378889999999999999999999999998874 456788999999999999999999
Q ss_pred HHHHHHHh
Q 036072 594 ELAQKMRF 601 (631)
Q Consensus 594 ~l~~~m~~ 601 (631)
+.+++...
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=1.7e-08 Score=105.03 Aligned_cols=311 Identities=8% Similarity=-0.065 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCC---CCHH--HHHHHHHH--HHHccCHHHHH---------HHHH
Q 036072 242 AHNSRTYNSMMSIL--GRARQFETMVSMLEEMGEKGL---LSME--TFKIAMNA--FAAAKERKKAV---------AIFE 303 (631)
Q Consensus 242 ~p~~~~y~~li~~~--~~~g~~~~A~~l~~~m~~~g~---~~~~--~~~~li~~--~~~~g~~~~A~---------~v~~ 303 (631)
.|+..+-+.+-+.| .+.+++++|..+++++..... .+.. .|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44555666666666 788999999999998765321 2333 33333332 11123333333 5566
Q ss_pred HHHhCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHhccc--CC----ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 304 LMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHRF--TP----NLTTYTVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 304 ~m~~~g~~~~~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~p----~~~~y~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
.+.....+.+. ..+......+...|++++|...|++..+.. .+ ...++..+...|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65442211111 122234455678899999999999976421 12 245788899999999999999999998
Q ss_pred HHHcC--C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 374 MIDKG--F---KP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 374 m~~~g--~---~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
..+.- . .+ ...+++.+...|...|++++|.+.+++..+... ..+... ...++..+...|...
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF-----------IAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHHHHHC
Confidence 77531 1 11 245778888999999999999999988775310 012111 234577788999999
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC
Q 036072 447 RRMDIVYDLLKEMEER----GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG----FKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~Li~~~~~~g~ 518 (631)
|++++|...|++..+. +.+....++..+...+.+.|++++|...+++..+.. -......+..+...|...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999988761 222236788889999999999999999999988732 12223456666666777788
Q ss_pred ---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 519 ---YEMGRKVWDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 519 ---~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+.+|..++++. +..+ ....+..+...|...|++++|.+.|++..+
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777763 2222 234667788899999999999999998865
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.02 E-value=1e-08 Score=115.32 Aligned_cols=165 Identities=10% Similarity=-0.029 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|+.+-.+|.+.|++++|+..|++..+..+-+..++..+..+|.+.|++++|++.|++.++.. +-+...|+.+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 67899999999999999999999999999988889999999999999999999999999999875 55788999999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
...|++++|.+.|++..+..+.+...|+.+...|.+.|++++|++.|++..+.. .-+...|..+..++...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 999999999999999887666788999999999999999999999999999863 2257889999999999999999999
Q ss_pred HHHHHHH
Q 036072 405 LFEVMKA 411 (631)
Q Consensus 405 ll~~m~~ 411 (631)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.02 E-value=1.3e-08 Score=114.32 Aligned_cols=166 Identities=14% Similarity=0.033 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
++.+|+.|...|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567889999999999999999999999886433 57899999999999999999999999999864 335789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (631)
+|...|++++|++.|++.++.... +...|+.+..+|...|++++|++.|++.++.. +-+...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999986543 68899999999999999999999999999864 3457789999999999999999
Q ss_pred HHHHHHHHHh
Q 036072 592 LDELAQKMRF 601 (631)
Q Consensus 592 A~~l~~~m~~ 601 (631)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=6.6e-09 Score=102.16 Aligned_cols=205 Identities=19% Similarity=0.171 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 383 ~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
..++..+...|...|++++|+..++++.+. +-.|. ...++..+...|...|++++|...|
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA--------------VAATLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH--------------HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456677777777888888888888777653 11121 2345777888999999999999999
Q ss_pred HHHHHc-----CC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 036072 457 KEMEER-----GC--PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS------GFKP-TIHTYNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 457 ~~m~~~-----g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~Li~~~~~~g~~~~A 522 (631)
.+..+. +. +....++..+...|...|++++|..+++++.+. +..| ...++..+..+|...|++++|
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988754 11 223567888889999999999999999998864 1122 356788999999999999999
Q ss_pred HHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HC-C-C-CCCHHHHHHHHHHHHhcCC
Q 036072 523 RKVWDEMIRR-------GCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEML---EK-G-M-KAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 523 ~~~~~~m~~~-------g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~---~~-g-~-~p~~~~~~~li~~~~~~g~ 588 (631)
..+++++.+. ...+. ...|..+...+...+....+.. +.++. +. + . ......+..+..+|...|+
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999988863 11222 2233333333333333222222 22221 11 1 1 1124468889999999999
Q ss_pred HHHHHHHHHHHHhc
Q 036072 589 SYVLDELAQKMRFS 602 (631)
Q Consensus 589 ~~~A~~l~~~m~~~ 602 (631)
+++|.+++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987643
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=5.5e-09 Score=102.71 Aligned_cols=135 Identities=16% Similarity=0.052 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHR--------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK------G 378 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~------g 378 (631)
...++..+...|...|++++|...+++..+. .+....++..+...|...|++++|...|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555666666666666666666654321 1223446777777777777777777777776653 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHH
Q 036072 379 F-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451 (631)
Q Consensus 379 ~-~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (631)
- .....++..+...|...|++++|.+.++++.+. +..|+ ...++..+...|...|++++
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--------------VAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH--------------HHHHHHHHHHHHHHHTCHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHHHHcCCHHH
Confidence 1 123556777888888888888888888887653 11121 23456677888888999999
Q ss_pred HHHHHHHHHH
Q 036072 452 VYDLLKEMEE 461 (631)
Q Consensus 452 A~~l~~~m~~ 461 (631)
|..++++..+
T Consensus 188 A~~~~~~~l~ 197 (283)
T 3edt_B 188 AETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=7.1e-08 Score=92.28 Aligned_cols=168 Identities=9% Similarity=-0.055 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
++..+......+...|++++|...|+...+....++...+..+..++...|++++|+..|++..+.. +-+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456677788899999999999999999987654677888889999999999999999999999864 235678899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDD-------NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP---VLDYNKFAA 581 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~---~~~~~~li~ 581 (631)
+|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|+++++. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999986432 44 55788888889999999999999999886 454 466888888
Q ss_pred HHHhcCCH---------------------------HHHHHHHHHHHhcC
Q 036072 582 DLSRAGRS---------------------------YVLDELAQKMRFSG 603 (631)
Q Consensus 582 ~~~~~g~~---------------------------~~A~~l~~~m~~~g 603 (631)
++...|+. ++|...+++..+..
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88888887 78888888876654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=7.1e-08 Score=92.26 Aligned_cols=154 Identities=11% Similarity=-0.050 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
.|+..|......+...|++++|...|++..+..+ .+...+..+..++...|++++|++.|+...+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3567788888888889999999999999888777 677777778888999999999999999988875 44667788888
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNL-------TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD---VVAHNIMLE 391 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~-------~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~ 391 (631)
.+|...|++++|...|++..+..+.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 889999999999999998877655566 55788888888889999999999988875 454 456777777
Q ss_pred HHHHcCCH
Q 036072 392 GLLKIGKR 399 (631)
Q Consensus 392 ~~~~~g~~ 399 (631)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766665
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=5.4e-08 Score=83.51 Aligned_cols=129 Identities=10% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.|..+...+...|++++|..+++++.+.+..+...+..+...+...|++++|...|+.+.+.. +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 345555666666666666666666665555455555556666666666666666666655543 3344455555555555
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|++++|..+++++.+..+.+..++..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555444334444555555555555555555555555544
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=6.6e-08 Score=96.74 Aligned_cols=211 Identities=9% Similarity=-0.064 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
++++|...|++. ...|...|++++|.+.|.+..+.... -+... ...+|+.+..
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~a~~~~~lg~ 85 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-----------AGNTYVEAYK 85 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH-----------HHHHHHHHHH
Confidence 366666666554 23455667777777766665442100 00000 1234556666
Q ss_pred HHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCC----CCCC-HHHHHHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKIQ-KMPDEAVRIYKEMVRSG----FKPT-IHTYNMIM 510 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g----~~p~-~~t~~~Li 510 (631)
.|.+.|++++|...+++..+. |-.. -..+++.+..+|... |++++|+..|++..+.. -... ..+++.+.
T Consensus 86 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777777777777777665432 1100 134677788888885 99999999998887631 1111 35688889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHH
Q 036072 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDD------NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV------LDYNK 578 (631)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~------~~~~~ 578 (631)
..|...|++++|...|++..+....... ..|..+..++...|++++|...+++..+. .|+. ..+..
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~ 243 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKS 243 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHH
Confidence 9999999999999999999876433221 25677778888999999999999988763 2321 12445
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHh
Q 036072 579 FAADLS--RAGRSYVLDELAQKMRF 601 (631)
Q Consensus 579 li~~~~--~~g~~~~A~~l~~~m~~ 601 (631)
++.++. ..+++++|.+.++++..
T Consensus 244 l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 244 LIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCc
Confidence 566664 45667788877766643
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.87 E-value=7.1e-06 Score=91.19 Aligned_cols=364 Identities=7% Similarity=-0.039 Sum_probs=241.2
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHH
Q 036072 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE---RKKAVAIFELM 305 (631)
Q Consensus 229 ~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~---~~~A~~v~~~m 305 (631)
..+-..+.+.+ -|..+|..++..+.+.+.++.+..+|+.+...-+.....|...+..-.+.++ ++.+.++|+..
T Consensus 53 ~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 34444454443 4899999999999999999999999999999988889999999999888898 99999999999
Q ss_pred HhCC-CCcCHHHHHHHHHHHHcCCCh--------HHHHHHHHHHhc--cc-CC-ChhhHHHHHHHHH---------hcCC
Q 036072 306 NKYK-FKAGVDTINCLLENLGRSKLP--------KEAQLLFDKLKH--RF-TP-NLTTYTVLLGGWC---------RVKN 363 (631)
Q Consensus 306 ~~~g-~~~~~~~~~~Ll~~~~~~g~~--------~~A~~l~~~m~~--~~-~p-~~~~y~~Li~~~~---------~~g~ 363 (631)
.... ..|++..|...+....+.++. +.+.++|+.... +. .+ +...|...+.... ..++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 9874 248898998888766655543 334577777554 23 33 4568888887654 3445
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC---CcHH------
Q 036072 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG-------------KRSDAIKLFEVMKAK--GPS---PNVR------ 419 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-------------~~~~A~~ll~~m~~~--g~~---p~~~------ 419 (631)
++.+..+|+.........-..+|......-...+ +++.|...+.++... ++. |...
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7888999999886322222334433332221111 123334444443221 111 1000
Q ss_pred ---HHHHHHHHHhhcCHHHHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-
Q 036072 420 ---SYTIMIWKFCKQNAAVYTCLITGFGNRR-------RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV- 488 (631)
Q Consensus 420 ---~~~~li~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~- 488 (631)
.+... -......|...+..--..+ ..+.+..+|++.... ++-....|...+.-+...|+.++|.
T Consensus 290 ~~p~~~~~----~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 290 NLPKPNEY----DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TSCCTTCC----CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cCCCCchh----HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 00000 0001133444444433332 134566778887765 3447788888888888889999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHH
Q 036072 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG---------CCPD------------DNSYTVLIGG 547 (631)
Q Consensus 489 ~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~li~~ 547 (631)
++|++.... ++.+...+-.++......|++++|.++|+.+++.. -.|+ ..+|..++..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 34566777888888999999999999999988641 0132 3468888888
Q ss_pred HHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 036072 548 LISQDRSGEAYKYLEEMLEK-GMKAPVLDYNKFAADLSRAG-RSYVLDELAQKMRFS 602 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~ 602 (631)
..+.|..+.|..+|.++.+. + ......|...+..-.+.| +.+.|.++|++..+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88899999999999999886 3 223344544444444554 489999999887654
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=1.6e-07 Score=80.54 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..+..+...+...|++++|..+|+.+.+.. +.+...+..+...+...|++++|..+++++....+.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 357778889999999999999999998865 4578888889999999999999999999988766667888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
..|++++|.++++++.+.. ..+...+..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998863 346778889999999999999999999998764
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=8.1e-07 Score=88.22 Aligned_cols=181 Identities=7% Similarity=0.013 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
|+..|+++.+.+ .++..++..+..++...|++++|++++......+..++ +...+..++..+.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~--------------~lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG--------------TTELLLLAIEVALLN 149 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT--------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC--------------cHHHHHHHHHHHHHC
Confidence 556666665544 34555555666777777777777777777655443212 223344556777777
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 447 RRMDIVYDLLKEMEERGCPP-----DGLTYNALIKLMK--IQK--MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p-----~~~t~~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
|+.+.|.+.+++|.+. .| +..+...|+.++. ..| +..+|..+|+++.+. .|+..+...++.++...|
T Consensus 150 ~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 150 NNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp TCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcC
Confidence 8888888888887664 34 2455555555532 223 788889999888664 355444445555788889
Q ss_pred CHHHHHHHHHHHHHcC-----C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 518 NYEMGRKVWDEMIRRG-----C----CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g-----~----~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
++++|.+.++.+.+.- . .-|..++..+|......|+ +|.++++++.+..
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 9999998888765431 0 2256666566666666676 7888888888753
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=4.3e-07 Score=88.81 Aligned_cols=169 Identities=9% Similarity=-0.017 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcCHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAGVDTIN 318 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~~~~~~ 318 (631)
+...+-.+...+.+.|++++|...|+++.+..+.+ ..++..+..++...|++++|+..|+...+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 46677778888889999999999999999887755 77899999999999999999999999988631 12355677
Q ss_pred HHHHHHHc--------CCChHHHHHHHHHHhcccCCChhhH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 036072 319 CLLENLGR--------SKLPKEAQLLFDKLKHRFTPNLTTY-----------------TVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 319 ~Ll~~~~~--------~g~~~~A~~l~~~m~~~~~p~~~~y-----------------~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
.+..++.. .|++++|...|+++.+..+.+.... ..+...|.+.|++++|...|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 78888888 9999999999999887665555555 5568889999999999999999
Q ss_pred HHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHc
Q 036072 374 MIDKGFKP--DVVAHNIMLEGLLKI----------GKRSDAIKLFEVMKAK 412 (631)
Q Consensus 374 m~~~g~~p--~~~ty~~li~~~~~~----------g~~~~A~~ll~~m~~~ 412 (631)
+.+..... ....+..+..+|... |++++|...|+.+.+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 98863221 245677777888766 8899999999999875
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=1.4e-06 Score=85.03 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=66.4
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 036072 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPD-VVAH 386 (631)
Q Consensus 312 ~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~ty 386 (631)
.+...+..+...+.+.|++++|...|+++.+..+.+ ...+..+..+|.+.|++++|...|+...+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345555566666677777777777777776654444 55667777777777777777777777776421 111 3455
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHc
Q 036072 387 NIMLEGLLK--------IGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 387 ~~li~~~~~--------~g~~~~A~~ll~~m~~~ 412 (631)
..+..++.. .|++++|+..|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 566666666 77777777777777664
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=4.2e-07 Score=85.80 Aligned_cols=172 Identities=13% Similarity=0.023 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI----------------AMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~----------------li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
...+-.....+...|++++|+..|++..+..+-+...+.. +..++...|++++|+..|+...+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344445566778999999999999998887766677777 899999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHH
Q 036072 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN--LMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 309 g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
. +-+...+..+..+|...|++++|...|++..+..+.+..+|..+...|...|+ .+.+...++.... ..|....+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 5 56788999999999999999999999999988777788899999988876654 4455555555432 22223334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 421 (631)
...-.++...|++++|...|++..+. .|+....
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 44555667789999999999999874 5665433
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.72 E-value=5.1e-07 Score=90.18 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC---Cc--CH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEK----GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKF---KA--GV 314 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~---~~--~~ 314 (631)
..|+.....|...|++++|...|++..+. |-+ ...+|+.+..+|...|++++|+..|+...+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555677788899999999999987654 222 245899999999999999999999988876421 11 14
Q ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHHhcccCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----
Q 036072 315 DTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPN------LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV---- 383 (631)
Q Consensus 315 ~~~~~Ll~~~~~~-g~~~~A~~l~~~m~~~~~p~------~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 383 (631)
.+++.+...|... |++++|...|++..+-.+.+ ..+|+.+...+.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999875432111 357889999999999999999999999986433222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 384 --VAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 384 --~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..|..+..++...|++++|...|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2567788889999999999999998876
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=1.7e-06 Score=82.67 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cCH-HHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AGV-DTINC 319 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~~-~~~~~ 319 (631)
...+..+...+.+.|++++|+..|+++.+..+.+ ..++..+..++...|++++|+..|+.+.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4556667777888999999999999998876532 467888889999999999999999999876421 111 23444
Q ss_pred HHHHHH------------------cCCChHHHHHHHHHHhcccCCChhhH-----------------HHHHHHHHhcCCH
Q 036072 320 LLENLG------------------RSKLPKEAQLLFDKLKHRFTPNLTTY-----------------TVLLGGWCRVKNL 364 (631)
Q Consensus 320 Ll~~~~------------------~~g~~~~A~~l~~~m~~~~~p~~~~y-----------------~~Li~~~~~~g~~ 364 (631)
+..++. ..|+.++|...|+++.+..+-+...+ ..+...|.+.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 444443 35789999999999987766555444 2456678899999
Q ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036072 365 MEAGRVWNEMIDKGFKPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414 (631)
Q Consensus 365 ~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~ 414 (631)
++|...|+++.+. .|+ ...+..+..++.+.|+.++|.+.++.+...+.
T Consensus 164 ~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 164 VAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 9999999999986 233 25688889999999999999999999887643
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=3.5e-06 Score=79.74 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK----MPDEAVRIYKEMVRSGFKPTIHTYN 507 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~ 507 (631)
++.++..|...|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55566677788888999999999999998875 56777777777777 6 8999999999998876 567788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 508 MIMKSYFQ----TGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYNK 578 (631)
Q Consensus 508 ~Li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 578 (631)
.|...|.. .+++++|.+.|++..+.|.. -+...+..|...|.. .++.++|..+|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 88888877 88999999999999987632 027788888888888 889999999999999872 24446777
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHhcCCCchHHHHHH
Q 036072 579 FAADLSRA-G-----RSYVLDELAQKMRFSGKFEVSNVLAR 613 (631)
Q Consensus 579 li~~~~~~-g-----~~~~A~~l~~~m~~~g~~~~~~~l~~ 613 (631)
|...|... | +.++|.+++++..+.|.......+..
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88887654 3 89999999999999987655555443
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.64 E-value=2.7e-06 Score=84.45 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=141.9
Q ss_pred HHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Q 036072 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--LSMETFKIAMNAFAA 291 (631)
Q Consensus 214 ~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~ 291 (631)
...++..+-... |...|+.+.... .++..++..+..++...|++++|++++.+....+. -+.+.+..++..+.+
T Consensus 73 a~~~la~~~~~~--a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 73 VLDLYVQFLDTK--NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHHHHTTT--CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc--HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 445555554332 677776554332 45566677888999999999999999999887775 577899999999999
Q ss_pred ccCHHHHHHHHHHHHhCCCCc-----CHHHHHHHHHHHH--c--CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 292 AKERKKAVAIFELMNKYKFKA-----GVDTINCLLENLG--R--SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~-----~~~~~~~Ll~~~~--~--~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
.|+.+.|.+.++.|.+. .| +..+...|+.+++ . .++..+|..+|+++.+.. |+..+-..++.++.+.|
T Consensus 149 ~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp TTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcC
Confidence 99999999999999876 45 3566666666633 2 348999999999997764 34333344555899999
Q ss_pred CHHHHHHHHHHHHHc-----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 363 NLMEAGRVWNEMIDK-----GF----KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~-----g~----~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
++++|.+.++.+.+. +. .-|..+...+|......|+ +|.+++.++.+..
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 999999999976653 11 2356666567767777787 8899999998853
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=3.5e-07 Score=83.77 Aligned_cols=163 Identities=8% Similarity=0.005 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LG 325 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~-~~ 325 (631)
.+..+...+.+.|++++|...|++..+..+.+...+..+...+...|++++|+..|+...+.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345566778899999999999999888877788999999999999999999999999987764 355444332222 22
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP-DVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
..+....|...|++..+..+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333457888888877667788999999999999999999999999999864332 35688899999999999999999
Q ss_pred HHHHHHH
Q 036072 405 LFEVMKA 411 (631)
Q Consensus 405 ll~~m~~ 411 (631)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=3.4e-07 Score=102.92 Aligned_cols=157 Identities=12% Similarity=-0.019 Sum_probs=138.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 256 GRARQFETMVSMLEEMG--------EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~--------~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
...|++++|++.+++.. +..+.+...+..+..++...|++++|++.|+...+.. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999998 6666677899999999999999999999999999875 55788999999999999
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
|++++|...|++..+..+.+...|..+..+|.+.|++++ ++.|++..+.. .-+...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987767788899999999999999999 99999998863 2367789999999999999999999999
Q ss_pred HHHHcCCCCc
Q 036072 408 VMKAKGPSPN 417 (631)
Q Consensus 408 ~m~~~g~~p~ 417 (631)
+..+. .|+
T Consensus 559 ~al~l--~P~ 566 (681)
T 2pzi_A 559 EVPPT--SRH 566 (681)
T ss_dssp TSCTT--STT
T ss_pred hhccc--Ccc
Confidence 88664 454
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=0.0001 Score=79.21 Aligned_cols=364 Identities=10% Similarity=-0.013 Sum_probs=202.0
Q ss_pred CHHHHHHHHHhhc-cCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC-C--CCCHHHHHH
Q 036072 210 SHNLVVDVLERFR-HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEK-G--LLSMETFKI 284 (631)
Q Consensus 210 ~~~~~~~vl~~~~-~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~-~~~A~~l~~~m~~~-g--~~~~~~~~~ 284 (631)
..+.+...+..+. .....+..+|+..... .|++..|...+....+.++ .+.+..+|+..... | ..+...|..
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3555555666554 2334578888776542 3688888888888777663 45567777776653 3 346677777
Q ss_pred HHHHHH----HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-------------cCCChHHHHHHHHHHhcccC-C
Q 036072 285 AMNAFA----AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-------------RSKLPKEAQLLFDKLKHRFT-P 346 (631)
Q Consensus 285 li~~~~----~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~-------------~~g~~~~A~~l~~~m~~~~~-p 346 (631)
.+..+. .+++.+.+.++|+..+......-...|......-. ..+.+..|..+++.+....+ .
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 776654 35678888888888887432111122222111100 01123334444444432211 1
Q ss_pred ChhhHHHHHHHHHhcC-C------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH
Q 036072 347 NLTTYTVLLGGWCRVK-N------LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g-~------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~ 419 (631)
+...|...+..-...+ . .+.+..+|+++... ...+...|...+..+.+.|+.++|..+|++.... |...
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 3345655555432221 1 34466788888775 3445777877888888889999999999988876 4432
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 420 ~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
........+.+.. ..+..+...+.. +.. ...+..+ ....|...+....+.++.+.|..+|++. +
T Consensus 247 ~l~~~y~~~~e~~-~~~~~l~~~~~~----------~~~-~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~ 313 (493)
T 2uy1_A 247 FLSLYYGLVMDEE-AVYGDLKRKYSM----------GEA-ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G 313 (493)
T ss_dssp HHHHHHHHHTTCT-HHHHHHHHHTC---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T
T ss_pred HHHHHHHhhcchh-HHHHHHHHHHHh----------hcc-chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h
Confidence 2111110000000 011111111100 000 0000001 1244556666666677788888888887 3
Q ss_pred CCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036072 497 SGFKPTIHTYNMIMKSYFQ-TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575 (631)
Q Consensus 497 ~g~~p~~~t~~~Li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 575 (631)
.. ..+...|......-.. .++.+.|..+|+...+.-. -+...|...++.....|+.+.|..+|+++. .....
T Consensus 314 ~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~l 386 (493)
T 2uy1_A 314 NE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRM 386 (493)
T ss_dssp TS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHH
T ss_pred CC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHH
Confidence 21 1244444332222222 3368888888888876532 134556667777777888888888888862 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 576 YNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
|...+..-...|+.+.+.++++++.
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777788888888777665
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=1.2e-06 Score=96.24 Aligned_cols=132 Identities=7% Similarity=-0.090 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|...|++..+..+.+..++..+..+|...|++++|++.|+...+.. +.+...+..+..+|
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 55566666666666666666666666666555556666666666666666666666666666543 33455666666666
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV---KNLMEAGRVWNEMIDK 377 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~---g~~~~A~~l~~~m~~~ 377 (631)
.+.|++++|.+.|++..+..+.+...+..+...+... |++++|.+.+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666666666666665554444555666666666666 6666666666666554
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=3.7e-05 Score=76.82 Aligned_cols=217 Identities=10% Similarity=0.004 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHhcccCCChhhHHHHHHHH----Hhc---CCHHH
Q 036072 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSK--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW----CRV---KNLME 366 (631)
Q Consensus 296 ~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~----~~~---g~~~~ 366 (631)
++|+++++.++... +-...+|+.--..+...+ .+++++..++.+....+.+..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555555543 334444554444444555 666666666666555455555555544444 333 56777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
++.+++.+.+.. .-|..+|+.-.-.+.+.|.++ ++++.++.+.+.... +..+|+.-...+.
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~----------------N~sAW~~R~~ll~ 191 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK----------------NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHH
Confidence 777777777653 336666666666666667666 777777777765332 2333333333333
Q ss_pred ccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHH
Q 036072 445 NRRR------MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE-AVRIYKEMVRSG--FKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 445 ~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~t~~~Li~~~~~ 515 (631)
+.+. ++++++.++.+....+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 3343 67777887777776544 77777777777777776433 444555544322 13356677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIR 531 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~ 531 (631)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7777777777777765
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=5.3e-06 Score=79.17 Aligned_cols=170 Identities=9% Similarity=-0.057 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH-HHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-P-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PTI-HTYNMI 509 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~~L 509 (631)
..+..+...+.+.|++++|...|+.+.+.... | ....+..+..+|.+.|++++|+..|+++.+..-. +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555677788899999999999999876432 1 1357778889999999999999999999975311 121 244455
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHHcCCH
Q 036072 510 MKSYFQ------------------TGNYEMGRKVWDEMIRRGCCPDDNSY-----------------TVLIGGLISQDRS 554 (631)
Q Consensus 510 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t~-----------------~~li~~~~~~g~~ 554 (631)
..++.. .|++++|...|+++++.... +...+ ..+...|.+.|++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 555554 57899999999999986322 22222 2345667889999
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036072 555 GEAYKYLEEMLEKGMKAP---VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 555 ~~A~~ll~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 605 (631)
++|...|+++++.. +.+ ...+..+..++.+.|+.++|.+.++++...+..
T Consensus 164 ~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999998863 112 246888999999999999999999999877654
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=6.2e-06 Score=77.97 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
+|.+.|++..+.| +...+..+-..|...+++++|++.|+...+.| ++..+..|...|..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------------------~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------------------DGDALALLAQLKIR 62 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHc
Confidence 3455566655543 55566666666666677777777776665543 22334444555555
Q ss_pred cC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH-
Q 036072 446 RR----RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFK-PTIHTYNMIMKSYFQ- 515 (631)
Q Consensus 446 ~g----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Li~~~~~- 515 (631)
+ ++++|.++|++..+.| +...+..|-..|.. .+++++|+.+|++..+.|.. -+...+..|...|..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 4 6777777777776654 45566666666655 67778888888877766521 125667777777777
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 036072 516 ---TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-D-----RSGEAYKYLEEMLEKG 568 (631)
Q Consensus 516 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~A~~ll~~m~~~g 568 (631)
.+++++|...|++..+.+ .+...+..|...|... | +.++|..+|++..+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 677888888888877751 2444566666666543 2 7788888888887766
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=1.3e-06 Score=86.98 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH-HH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL-LE 322 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L-l~ 322 (631)
+...+..+...+.+.|++++|...|++..+..+-+...+..+...+...|++++|+..++.+... .|+....... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 45667778888999999999999999999999889999999999999999999999999998776 3555433333 33
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK-PDVVAHNIMLEGLLKIGKRSD 401 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~ 401 (631)
.+...+..+.|...+++..+..+.+...+..+...+...|++++|...|.++...... .+...+..+...+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 4667788888999999988877888999999999999999999999999999986322 126789999999999999999
Q ss_pred HHHHHHHHHH
Q 036072 402 AIKLFEVMKA 411 (631)
Q Consensus 402 A~~ll~~m~~ 411 (631)
|...|++...
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=2.7e-06 Score=80.13 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
+...|.+.|++++|...|++..+.. +-+...|..+..++...|++++|+..|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555432 11344455555555555555555555555544
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=3.7e-05 Score=76.76 Aligned_cols=220 Identities=10% Similarity=0.009 Sum_probs=150.0
Q ss_pred CChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HcC---CC
Q 036072 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK--ERKKAVAIFELMNKYKFKAGVDTINCLLENL----GRS---KL 329 (631)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g--~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~----~~~---g~ 329 (631)
...++|+.+++.+...++-...+|+.--.++...+ .++++++.++.+.... +-+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34457777777777777766667776666666666 7777888777777654 33445555433333 333 67
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM--EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK------RSD 401 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~------~~~ 401 (631)
+++++.+++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++.+.+.... |..+|+.-...+.+.++ +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 788888888887776777778877777777778777 888888888876433 66677766666666665 778
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 036072 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM-DIVYDLLKEMEERG--CPPDGLTYNALIKLM 478 (631)
Q Consensus 402 A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g--~~p~~~t~~~li~~~ 478 (631)
+++.++.+.... |+ +..+|+-+-..+.+.|+. +.+..+..++.+.+ -..+...+..+...|
T Consensus 205 El~~~~~aI~~~--p~--------------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 205 ELNYVKDKIVKC--PQ--------------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHHHHC--SS--------------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CC--------------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 888888777653 33 445555555555555553 33444555544332 134677888888888
Q ss_pred HhcCChhHHHHHHHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~ 496 (631)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 899999999999999886
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.54 E-value=2.6e-06 Score=93.60 Aligned_cols=154 Identities=6% Similarity=-0.156 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
|++++|.+.|++..+... -+...|..+...+...|++++|.+.|++..+.. +-+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888888888776532 257788888888999999999999999988764 345778888999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVLDELAQKMRFSG 603 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g 603 (631)
++..+.... +...|..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++....+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998876433 67888888899999999999999999988764 34567788888899888 99999999998887655
Q ss_pred C
Q 036072 604 K 604 (631)
Q Consensus 604 ~ 604 (631)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.2e-06 Score=98.45 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=136.7
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 036072 359 CRVKNLMEAGRVWNEMI--------DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 430 (631)
...|++++|++.|++.. +. ...+...+..+..++...|++++|++.|+...+. .|+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~------------- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGW------------- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCC-------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--Ccc-------------
Confidence 77899999999999988 32 2335677888888999999999999999998875 333
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
+...|..+...|...|++++|.+.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.. .-+...|..+.
T Consensus 466 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg 541 (681)
T 2pzi_A 466 -RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLA 541 (681)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHH
Confidence 5566777888888999999999999998876433 56788888889999999999 99999998864 34677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 036072 511 KSYFQTGNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDR 553 (631)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 553 (631)
.+|...|++++|.+.|++..+.. |+ ...|..+..++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99999999999999999887653 44 5677777777766554
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.53 E-value=4.9e-07 Score=80.54 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=108.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
|...+...|++++|+..+...... .| +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 345566678889998888876543 22 23345667888999999999999999998864 346788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY-LEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l-l~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
++++|...|++.++.... +...|..+...|.+.|+.++|.+. +++..+.. +-+...|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999999886443 678888899999999998776654 57777753 3356677777777766664
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=2.2e-05 Score=78.10 Aligned_cols=200 Identities=7% Similarity=0.008 Sum_probs=141.9
Q ss_pred CCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH------H
Q 036072 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM------E 280 (631)
Q Consensus 207 ~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~------~ 280 (631)
..++...+..+...++-..........+.. ......+...+..+...|++++|.+.+++..+...... .
T Consensus 42 ~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 2qfc_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSD-----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp SCCCHHHHHHHTTTSCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhccccccc-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHH
Confidence 356666666666665544332211111110 01134556678888999999999999998887655332 2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCC---CcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhc---ccCCC----h
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKF---KAG--VDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPN----L 348 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~---~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~---~~~p~----~ 348 (631)
.+..+...+...|++++|+..++...+... .+. ..+++.+...|...|++++|...|++..+ ..+.+ .
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344566667788999999999999876421 122 55888999999999999999999999762 22222 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 036072 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKG----FKP-DVVAHNIMLEGLLKIGKRSDA-IKLFEVMKA 411 (631)
Q Consensus 349 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~ty~~li~~~~~~g~~~~A-~~ll~~m~~ 411 (631)
.+|+.+...|.+.|++++|...+++..+.. ... -..+|..+..+|.+.|+.++| ...++....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 588999999999999999999999877531 111 166788899999999999999 777776643
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.51 E-value=1.8e-06 Score=78.87 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=31.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+...+...|++++|...|++..+..+.+...+..+...+.+.|++++|...|+....
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 344455555555555555555444344555555555555555566555555555544
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=4.1e-06 Score=84.21 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=130.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.|++++|.+++++..+.. +.. .+...++++.|...|.+. ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 577888888888776542 111 011147777777776654 45677889999999988
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 372 NEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP-NVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 372 ~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
.+..+. |-.. -..+|+.+...|...|++++|+..|++..+.-... +... ...++..+...|..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~-----------~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT-----------AAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHHHHc
Confidence 877653 1110 14477888888889999999999998876431110 1100 12345667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPP-----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKPT-IHTYNMIMKSYFQ 515 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~Li~~~~~ 515 (631)
|++++|+..|++..+..... ...+++.+...|...|++++|+..|++..+. +..+. ...+..+..++..
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 88888888888765431100 1346667777778888888888888777652 21111 2245556666666
Q ss_pred cCCHHHHHHHHHHHH
Q 036072 516 TGNYEMGRKVWDEMI 530 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~ 530 (631)
.|++++|...|++..
T Consensus 208 ~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 208 RADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHh
Confidence 777888877777776
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.1e-05 Score=80.37 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=123.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGC-PPDG----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PT----IHTYNM 508 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 508 (631)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..|+++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678888999999999999887432 2221 13334666677778999999999999984322 22 347899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRR-----GCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP-VLDYN 577 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~-~~~~~ 577 (631)
+..+|...|++++|...|+++.+. +..+. ..+|..+...|.+.|++++|.+++++.++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 11112 347888999999999999999999988753 22222 56789
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 036072 578 KFAADLSRAGR-SYVLDELAQKMR 600 (631)
Q Consensus 578 ~li~~~~~~g~-~~~A~~l~~~m~ 600 (631)
.+..++.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=0.00043 Score=74.29 Aligned_cols=322 Identities=9% Similarity=0.013 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhC-CC-CcCHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-RKKAVAIFELMNKY-KF-KAGVDTINCLLE 322 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-~~~A~~v~~~m~~~-g~-~~~~~~~~~Ll~ 322 (631)
.+|...+..+-. |+++.+..+|++.... .++...|...+....+.+. .+.+..+|+..... |. ..+...|...+.
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 445555555544 8899999999999885 4688899888888887764 46677888887764 43 347788888887
Q ss_pred HHHc----CCChHHHHHHHHHHhcccCCC-h-hhHHHHHHHHHhcC--------------CHHHHHHHHHHHHHcCCCCC
Q 036072 323 NLGR----SKLPKEAQLLFDKLKHRFTPN-L-TTYTVLLGGWCRVK--------------NLMEAGRVWNEMIDKGFKPD 382 (631)
Q Consensus 323 ~~~~----~g~~~~A~~l~~~m~~~~~p~-~-~~y~~Li~~~~~~g--------------~~~~A~~l~~~m~~~g~~p~ 382 (631)
.+.. .++.+.+.++|+....- ++. . ..|...... .+.. .+..|..+++++...--..+
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENF-ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 6543 35678899999998762 221 1 123222221 1111 22223333333322100001
Q ss_pred HHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHH
Q 036072 383 VVAHNIMLEGLLKIG--K-----RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455 (631)
Q Consensus 383 ~~ty~~li~~~~~~g--~-----~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 455 (631)
...|...+..-...+ - .+.+..+|+++... +. .....|-..+..+.+.|+.+.|..+
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---------------~p-~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---------------FY-YAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---------------TT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---------------CC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222322222211100 0 12233344443332 11 2466777778888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG---------F---KPTIHTYNMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 456 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~---~p~~~t~~~Li~~~~~~g~~~~A~ 523 (631)
+++.... +.+...+. .|+...+.++. ++.+.+.- . ......|...+..+.+.++.+.|.
T Consensus 236 ~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887 33333322 23332222222 23322210 0 112355777777777888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLIS-QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
.+|+.. ... ..+...|......-.. .++.+.|..+|+...+.. +-+...+..+++...+.|+.+.|..++++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999 321 2344555432222222 346999999999998753 233555677788888999999999888886
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=5.8e-06 Score=82.22 Aligned_cols=168 Identities=8% Similarity=-0.031 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
.+...+..+...+...|++++|+..|+...+.. +-+...+..+...|...|++++|..+++++....+...........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 345677888889999999999999999999875 5578889999999999999999999999987654422333333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHH
Q 036072 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436 (631)
Q Consensus 357 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 436 (631)
.+.+.++.++|...|++..... +.+...+..+...+...|++++|+..|.++.+.....+ +...+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~--------------~~~a~ 258 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA--------------DGQTR 258 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG--------------GGHHH
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--------------cchHH
Confidence 5777888899999999988863 34678888999999999999999999999988643221 24556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
..++..|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 677777888888888887777643
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=2.6e-05 Score=77.58 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=144.4
Q ss_pred CCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHH--
Q 036072 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR---TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-- 280 (631)
Q Consensus 206 ~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-- 280 (631)
...++.+.+..+...++-... .+|... . ..+.. .+...+..+...|++++|..++++..+.....+.
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~~---~~~~~~----~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPII---HFYEVL----I-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCTH---HHHHTT----T-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHhCcCHH---HHhCCC----C-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 356888888888887775532 333321 1 11233 3334477888999999999999999876543332
Q ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHcCCChHHHHHHHHHHhcc---c---C
Q 036072 281 ----TFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AG----VDTINCLLENLGRSKLPKEAQLLFDKLKHR---F---T 345 (631)
Q Consensus 281 ----~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~---~ 345 (631)
.+..+...+...+++++|+..|+...+.... .+ ..+++.+...|...|++++|...|++..+. . .
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 3334666777778999999999999884322 22 346899999999999999999999997631 1 1
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 036072 346 P-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK----GFKPD-VVAHNIMLEGLLKIGK-RSDAIKLFEVMKA 411 (631)
Q Consensus 346 p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~-~~~A~~ll~~m~~ 411 (631)
+ ...+|..+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1 2347889999999999999999999987753 22222 6788889999999994 6999999988764
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.46 E-value=5e-07 Score=80.47 Aligned_cols=139 Identities=7% Similarity=-0.119 Sum_probs=75.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l 336 (631)
..|++++|+..++......+-.+..+..+...|...|++++|++.|+..++.. +-+..+|..+..+|...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34555666666555544322223344555666666666666666666666554 34556666666666666666666666
Q ss_pred HHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV-WNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 337 ~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l-~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
|++..+..+.+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6665554444556666666666666666554443 35554431 113444444444444333
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=2.2e-05 Score=78.08 Aligned_cols=184 Identities=10% Similarity=0.045 Sum_probs=134.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--HH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG-----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGF---KPT--IH 504 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 504 (631)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677888999999999999988775332111 2234455667788999999999999886321 122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPD-----DNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKA-PV 573 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p-~~ 573 (631)
+|+.+...|...|++++|...|++..+. ...|+ ..+|..+...|...|++++|.+++++.++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999998732 01112 258888999999999999999999998753 2111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHH----HhcCCCchHHHHHHHHHhh
Q 036072 574 LDYNKFAADLSRAGRSYVL-DELAQKM----RFSGKFEVSNVLARWAETT 618 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A-~~l~~~m----~~~g~~~~~~~l~~~~~~~ 618 (631)
..|..+..+|.+.|+.++| ...+++. +..|.....+.+..|..++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~ 286 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHH
Confidence 6788999999999999999 7767664 3345555555555555443
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.44 E-value=5.4e-06 Score=83.29 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=159.6
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll 406 (631)
.|++++|.+++++..+..+... +...+++++|...|... ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 5678889999988776433220 11157888888888765 44677889999999999
Q ss_pred HHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 036072 407 EVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKI 480 (631)
Q Consensus 407 ~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~ 480 (631)
.+..+.... .+... -..+|+.+...|...|++++|...|++..+. |-.. ...+++.+...|..
T Consensus 60 ~~al~~~~~~~~~~~-----------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 60 LQEAEAHANNRSLFH-----------AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHH-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 887653110 01100 1346777888999999999999999886543 2111 13567778888888
Q ss_pred cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRS----GFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GCCPD-DNSYTVLIGGLIS 550 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~ 550 (631)
|++++|+..|++..+. +-.. ...+++.+...|...|++++|...|++..+. +..++ ...+..+..++..
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999988753 1111 1467888999999999999999999998863 21111 2356667777788
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 036072 551 QDRSGEAYKYLEEMLEKGM--KAP--VLDYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~--~p~--~~~~~~li~~~~~~g~~~~A~~l 595 (631)
.|++++|...|++.. ... ... ......++.++ ..|+.+.+.++
T Consensus 208 ~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 208 RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 899999999999998 421 111 12344556655 57787766663
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=7.1e-06 Score=73.26 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+...|+++.|...|++..+..+.+..++..+..++...|++++|++.++...+.. +.+...+..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3344455555555555555555555555444444555555555555555555555555554432 233444444444444
Q ss_pred cCCChHHHHHHHHHHhc
Q 036072 326 RSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~ 342 (631)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44455555444444443
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=9.4e-06 Score=68.22 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|..+|+++....+.+..++..+...+...|++++|+..|+.+.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555555666666666666666666655544455555555555555556666555555555442 23444455555555
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
...|++++|...|+++.+..+.+...+..+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5555555555555554443333333333333
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.38 E-value=2.5e-05 Score=73.18 Aligned_cols=130 Identities=12% Similarity=0.000 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+...|++++|...|++. +.|+...|..+...|...|++++|+..|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 34556677788888888888888766 35677888888888888888888888888887753 34667788888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 514 FQTGNYEMGRKVWDEMIRRGCC--------------P-DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~--------------p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
...|++++|...|++..+.... | +...+..+..+|...|++++|.+.|+++.+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888875322 1 12677778888888888888888888887753
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=2.2e-05 Score=73.57 Aligned_cols=125 Identities=12% Similarity=-0.105 Sum_probs=73.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~ 363 (631)
.+...+...|++++|+..|+... .++...+..+...|...|++++|...|++..+..+.+...|..+...|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34445555566666666555442 34555666666666666666666666666554444455566666666666666
Q ss_pred HHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 364 LMEAGRVWNEMIDKGFK--------------P-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~--------------p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+++|...|++..+.... | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666653211 1 1245566666667777777777777766654
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=1.9e-05 Score=70.35 Aligned_cols=130 Identities=13% Similarity=-0.018 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..+..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+..+.+...|..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 467778888999999999999999998865 5578889999999999999999999999988776778889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAH--NIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..|++++|...|++..+... .+...+ ..++..+...|++++|++.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999988632 244444 3344447788999999999887643
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=9.8e-06 Score=69.21 Aligned_cols=116 Identities=7% Similarity=-0.105 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+.+.|++++|...|++..+....+..++..+...+...|++++|++.++...+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 355566666666666666666666666666555555566666666666666666666666655543 3345555555555
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
|...|++++|...|++..+..+.+...+..+...+.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5555666666555555544333333444444444433
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.32 E-value=1.1e-05 Score=68.37 Aligned_cols=116 Identities=15% Similarity=-0.034 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+...|+++.|...|++.....+.+..++..+...+...|++++|++.++...+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444455555555555555555555555544432 223444444444444
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
..|++++|...|++..+..+.+...+..+...+.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 4444444444444443333333344444444443333
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=5.4e-06 Score=75.54 Aligned_cols=121 Identities=10% Similarity=0.125 Sum_probs=91.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHcCCCh--HH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLP--KE 332 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~-~~~~g~~--~~ 332 (631)
...|++++|...+++..+..+.+..++..+...|...|++++|+..|+...+.. +.+...+..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345778888888888877777777888888888888888888888888887764 4466777777777 6677887 88
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
|...|++..+..+.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888877665666777888888888888888888888888775
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.29 E-value=0.00035 Score=70.64 Aligned_cols=154 Identities=10% Similarity=-0.026 Sum_probs=108.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC-C-ChHHH
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-K-LPKEA 333 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~-g-~~~~A 333 (631)
+.+..++|+++++.+...++-+..+|+.--..+...+ .++++++.++.+.... +-+..+|+.-..++.+. + +.+++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344557777777777777766667766666666666 4778888887777765 45666666655555444 5 67788
Q ss_pred HHHHHHHhcccCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------
Q 036072 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM--------EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK------- 398 (631)
Q Consensus 334 ~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~------- 398 (631)
+.+++.+.+..+.|..+|+--.-.+.+.+.++ ++++.++++.+.... |..+|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 88888887766667777776665555555555 888888888887433 77788877777777765
Q ss_pred HHHHHHHHHHHHHc
Q 036072 399 RSDAIKLFEVMKAK 412 (631)
Q Consensus 399 ~~~A~~ll~~m~~~ 412 (631)
++++++.+.++...
T Consensus 224 ~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 224 LQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67888888887765
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=3e-05 Score=64.97 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..+..+...+...|++++|++.|+.+.+.. +.+..++..+...+...|++++|..+|+++.+..+.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 455566666666677777777776666543 3455566666666666666666666666665544445566666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 036072 360 RVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~ 377 (631)
..|++++|...|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=0.0004 Score=70.20 Aligned_cols=173 Identities=8% Similarity=-0.021 Sum_probs=128.5
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc-C-CHHHHHH
Q 036072 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-K-NLMEAGR 369 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~-g-~~~~A~~ 369 (631)
+..++|+++++.++... +-+..+|+.--..+...| .+++++.+++.+....+.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568899999998876 556677887767777777 599999999999888788889999888888777 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--------DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
+++.+.+.. .-|..+|+.-.-.+.+.|.++ ++++.++++.+.... +..+|+....
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~----------------N~SAW~~R~~ 209 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR----------------NNSAWGWRWY 209 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC----------------CHHHHHHHHH
Confidence 999999864 337777776665555555555 888999888876433 4455555555
Q ss_pred HHhccCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036072 442 GFGNRRR-------MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484 (631)
Q Consensus 442 ~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 484 (631)
.+.+.++ ++++++.+++....... |...|+.+-..+.+.|..
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 6666655 67888888887776443 777777766666666653
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=2e-05 Score=67.55 Aligned_cols=96 Identities=7% Similarity=-0.053 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.|...-..+.+.|++++|+..|++..+..+.+..+|..+..++...|++++|++.|+..++.. +.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 344444555555555555555555555555455555555555555555555555555555443 3334445555555555
Q ss_pred CCChHHHHHHHHHHhcc
Q 036072 327 SKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~ 343 (631)
.|++++|...|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555554443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=1.1e-05 Score=74.74 Aligned_cols=157 Identities=10% Similarity=-0.020 Sum_probs=115.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCC
Q 036072 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGFKP-TIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~Li~~~~~~g~ 518 (631)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3468999999966555432 223567888889999999999999999998876 22222 35678888999999999
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcC
Q 036072 519 YEMGRKVWDEMIRR----GCCP--DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG--M-KAP--VLDYNKFAADLSRAG 587 (631)
Q Consensus 519 ~~~A~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g--~-~p~--~~~~~~li~~~~~~g 587 (631)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. . .+. ...+..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987753 2111 24567788888999999999999999987431 1 111 234678889999999
Q ss_pred CHHHHHHHHHHHHh
Q 036072 588 RSYVLDELAQKMRF 601 (631)
Q Consensus 588 ~~~~A~~l~~~m~~ 601 (631)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887643
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=3.1e-05 Score=65.51 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
..+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 345555556666666666666666666542 234556666666666666666666666666654322 455666666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 549 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66777777777776666543 2344555555555555554
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=8.3e-06 Score=80.86 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...+..+...+.+.|++++|...|++..+..+.+...+..+..++...|++++|+..++...+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 355666777777777888888888887777766677777777777777777777777777777664 4456677777777
Q ss_pred HHcCCChHHHHHHHHHHhc
Q 036072 324 LGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~ 342 (631)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777543
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=1.6e-05 Score=73.76 Aligned_cols=156 Identities=8% Similarity=-0.089 Sum_probs=111.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC----CC-CcCHHHHHHHHHHHHcCCCh
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY----KF-KAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g~-~~~~~~~~~Ll~~~~~~g~~ 330 (631)
...|++++|.++++.+.........++..+...+...|++++|+..++...+. +. .....++..+...|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888888555554322235568888888899999999999988887662 21 22345677788889999999
Q ss_pred HHHHHHHHHHhcc---cCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHcCC
Q 036072 331 KEAQLLFDKLKHR---FTPN----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG---FKPD--VVAHNIMLEGLLKIGK 398 (631)
Q Consensus 331 ~~A~~l~~~m~~~---~~p~----~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~ty~~li~~~~~~g~ 398 (631)
++|...+++..+. ...+ ...+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999886542 2212 3467888889999999999999998877431 1111 2345778888999999
Q ss_pred HHHHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKA 411 (631)
Q Consensus 399 ~~~A~~ll~~m~~ 411 (631)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.21 E-value=4.8e-05 Score=65.20 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
+...-..|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3444445555666666666666555542 234555555556666666666666666665554322 45555555566666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 036072 551 QDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~ 567 (631)
.|++++|.+.|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666665553
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=4.2e-05 Score=65.11 Aligned_cols=118 Identities=10% Similarity=-0.079 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+...+..+...+...|++++|+..|+...+.. +.+...+..+...|...|++++|...+++..+..+.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45577777888888888888888888887764 44677777788888888888888888888776555667778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
+.+.|++++|.+.|++..+... -+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 8888888888888888776521 13344555555554443
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=3e-05 Score=78.98 Aligned_cols=130 Identities=8% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---------------METFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---------------~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
...|..+...+.+.|++++|...|++..+..+.+ ..+|..+..+|.+.|++++|+..|+..++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567777778888888888888888887766543 3566666666666666666666666666553
Q ss_pred CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036072 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA-GRVWNEMI 375 (631)
Q Consensus 310 ~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A-~~l~~~m~ 375 (631)
+.+...|..+..+|...|++++|...|++..+..+.+..++..+...+.+.|++++| ..+|..|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665554444555566666666666665555 23444443
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=2.5e-05 Score=69.06 Aligned_cols=96 Identities=11% Similarity=-0.069 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
..+..+...+...|++++|...|+........ +...|..+..+|...|++++|+..|++.+... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445555556666666666666665554322 45555555566666666666666666665543 22344555566666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036072 584 SRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 584 ~~~g~~~~A~~l~~~m~~ 601 (631)
...|++++|.+.+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665543
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.13 E-value=2.6e-05 Score=69.35 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
.+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|...|++..+..+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 45555555555566666666665555543 33455555555555555666666666555554444455555555555666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 361 VKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~ 377 (631)
.|++++|...|+...+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666555553
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=7.4e-05 Score=61.84 Aligned_cols=106 Identities=9% Similarity=-0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555566666666666666666666666555555566666666666666666666666665543 23455555555556
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
...|++++|...++...+..+.+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 666666666666655544333333333
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=9.9e-06 Score=71.76 Aligned_cols=93 Identities=14% Similarity=-0.064 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
..+...+...|++++|...|+......+.+...|..+..+|...|++++|+..|++..... +-+...|..+..+|...|
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3333444444444444444444433333344444444444444444444444444444331 112333444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKA 411 (631)
Q Consensus 398 ~~~~A~~ll~~m~~ 411 (631)
++++|.+.|+...+
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.12 E-value=6.7e-05 Score=76.34 Aligned_cols=122 Identities=7% Similarity=-0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--------------GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 499 (631)
..+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++.++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455566777777888888888887776532211 3455555555555555555555555555542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 500 ~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+.+...|..+..+|...|++++|...|++.++.... +...+..+..++...|+.++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 224455555555555555555555555555544222 344555555555555555554
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=3.3e-05 Score=70.14 Aligned_cols=122 Identities=9% Similarity=0.075 Sum_probs=102.3
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH-HHhcCCH--HH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG-WCRVKNL--ME 366 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~-~~~~g~~--~~ 366 (631)
...|++++|+..++...+.. +.+...+..+...|...|++++|...|++..+..+.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45688899999999988765 56788999999999999999999999999887666688889899888 8899998 99
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
|...|++..+.. +-+...+..+...|...|++++|...|+.+.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999863 2357788889999999999999999999998853
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=7.2e-05 Score=63.59 Aligned_cols=95 Identities=12% Similarity=-0.092 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|+..|+...+.. +.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444455555555666666666655555555455555555555555555555555555555543 333445555555555
Q ss_pred cCCChHHHHHHHHHHh
Q 036072 326 RSKLPKEAQLLFDKLK 341 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~ 341 (631)
..|++++|...|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 5555555555555543
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.07 E-value=0.00014 Score=71.06 Aligned_cols=191 Identities=5% Similarity=-0.113 Sum_probs=105.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHhC------------CC----C--
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIA-------MNAFAAAKERKKAVAIFELMNKY------------KF----K-- 311 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~l-------i~~~~~~g~~~~A~~v~~~m~~~------------g~----~-- 311 (631)
..++...|.+.|.+..+..+-..+.|..+ ...+...++..+++..+..-.+. |. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 56888888888888888888777777777 45555555555555555444441 10 0
Q ss_pred --cCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 036072 312 --AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD--VVAHN 387 (631)
Q Consensus 312 --~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~ 387 (631)
--....-.+...+...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 0012223344556666777777777766654432233 44555556666677777777666443321 110 12455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
.+-.++...|++++|+..|++.......|.... ........++.+.|+.++|..+|+++...
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~-------------da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACAR-------------AIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555666666666666666666653222132110 11222344455556666666666666654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=6e-06 Score=76.92 Aligned_cols=131 Identities=14% Similarity=-0.040 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC---------------HHHHHHHHHHHHcCCChHHHHHHHHHHhccc
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG---------------VDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~---------------~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 344 (631)
..+..+...+...|++++|+..|+...+..-... ..++..+..+|...|++++|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666667777777777776665421111 2667777788888888888888888877666
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 036072 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKA 411 (631)
Q Consensus 345 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~-~ll~~m~~ 411 (631)
+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677788888888888888888888888887752 225566666667766666666555 44444443
No 149
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.06 E-value=5.3e-05 Score=67.29 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|...|++.....+.+...|..+..+|...|++++|+..|+...+.. +.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 45677888889999999999999999999999899999999999999999999999999999876 55788899999999
Q ss_pred HcCCChHHHHHHHHHHhcc
Q 036072 325 GRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~ 343 (631)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.00023 Score=58.77 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444555555555555555555555432 224455555555555566666666666555554221 4455555555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 036072 550 SQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~ 567 (631)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 566666666666555543
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.03 E-value=1.9e-05 Score=78.27 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
...+..+...+...|++++|...|++..+..+.+...|..+...|.+.|++++|...+++..+.. .-+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555555556666666666665554444455556666666666666666666666655532 22445555566666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~ 411 (631)
...|++++|...|....+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665544
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.03 E-value=5.5e-05 Score=66.09 Aligned_cols=97 Identities=6% Similarity=-0.141 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..+..+...+.+.|++++|...|++....++.+...|..+..++...|++++|+..|+...+.. +.+...+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3445555666777777777777777777776677777777777777777777777777777664 445566666777777
Q ss_pred cCCChHHHHHHHHHHhcc
Q 036072 326 RSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~ 343 (631)
..|++++|...|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776543
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.02 E-value=0.00019 Score=70.29 Aligned_cols=185 Identities=14% Similarity=-0.007 Sum_probs=103.8
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVL-------LGGWCRVKNLMEAGRVWNEMIDKGFKPD---------------- 382 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~L-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 382 (631)
..++...|.+.|.++.+..+-....|+.+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45677777777777666555556666666 3444444444444444443332 1111
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 383 ------VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 383 ------~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
...+-.+...+...|++++|.++|+.+...+ |+.. ....+...+.+.+++++|+..|
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~---------------~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL---------------VAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH---------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH---------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 1223345556667777777777777665432 3221 1112233556667777777777
Q ss_pred HHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 457 KEMEERGCPPD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 457 ~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
+..... |+ ...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 159 ~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 159 KSAGKW---PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp TTGGGC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhcc---CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 643322 22 22455566667777777777777777664332243 2345555666677777777777777776
Q ss_pred Hc
Q 036072 531 RR 532 (631)
Q Consensus 531 ~~ 532 (631)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.02 E-value=9.7e-05 Score=66.18 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+...+..+...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|...|++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456666667777777777777777777653 235666777777777777777777777777765432 5666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 036072 547 GLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~~ 567 (631)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=0.00017 Score=62.85 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=45.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 552 (631)
.+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++....... +...|..+..+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 33444455555555555555555432 224444555555555555555555555555544322 3344444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 036072 553 RSGEAYKYLEEMLE 566 (631)
Q Consensus 553 ~~~~A~~ll~~m~~ 566 (631)
++++|.+.|++.++
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=9e-05 Score=63.75 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+...|++++|...|++.....+.+...+..+..++...|++++|+..|+...+.. +.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 456666666677777777777777777666666566666666666667777777776666666654 3355566666666
Q ss_pred HHcCCChHHHHHHHHHHh
Q 036072 324 LGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~ 341 (631)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666654
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=7.1e-05 Score=69.46 Aligned_cols=132 Identities=13% Similarity=-0.020 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM----------------ETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----------------~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
...|..+...+.+.|++++|...|++..+....++ .++..+..++...|++++|+..++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567778888899999999999999988655333 78888999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 036072 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG-RVWNEMIDK 377 (631)
Q Consensus 309 g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~-~l~~~m~~~ 377 (631)
. +.+...+..+..+|...|++++|...|++..+..+.+..++..+...+...++.+++. ..|..|...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 5678889999999999999999999999988766667888888888888888777776 555555544
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00067 Score=70.97 Aligned_cols=170 Identities=10% Similarity=-0.022 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE--- 461 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--- 461 (631)
+..+...|...|++++|.+++..+.+. +..++..+ ...+.+.+-..+...|+++.|..++.....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT-----------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK 126 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH-----------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 455666777777777777777665432 11111111 011233334445556777777777766543
Q ss_pred -cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 036072 462 -RGCPPD-GLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GF--KP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-- 532 (631)
Q Consensus 462 -~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-- 532 (631)
.+..+. ..++..+...|...|++++|..+++++... +. ++ ...++..++..|...|++++|..++++....
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 127 REKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 222222 346667777888888888888888776642 11 11 2456777788888888888888888776542
Q ss_pred CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 533 GCCPD----DNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 533 g~~p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.+..+ ...+..+...+...|++++|...|.+..+
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11111 23455555666677888888777766643
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.97 E-value=0.00012 Score=65.53 Aligned_cols=98 Identities=12% Similarity=-0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|+..|++..+..+.+...|..+..+|...|++++|+..|+...+.. +.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44566666666666777777777766666665566666666666666666666666666666554 33455666666666
Q ss_pred HcCCChHHHHHHHHHHhcc
Q 036072 325 GRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~ 343 (631)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666665443
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=7.9e-05 Score=61.09 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc--CHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA--GVDTINCLLE 322 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~--~~~~~~~Ll~ 322 (631)
...|..+...+...|++++|...|++..+..+.+..++..+..++...|++++|++.|+...+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 44566667777778888888888888777766667777777777777778888877777777654 33 5667777777
Q ss_pred HHHcC-CChHHHHHHHHHHhccc
Q 036072 323 NLGRS-KLPKEAQLLFDKLKHRF 344 (631)
Q Consensus 323 ~~~~~-g~~~~A~~l~~~m~~~~ 344 (631)
++... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777766543
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00026 Score=60.02 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
.+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|...|++..+..+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555666666777777777777666654 34566666666666667777777776666655545556666666666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 361 VKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~ 377 (631)
.|++++|...|++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 66666666666666553
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.91 E-value=0.00011 Score=62.19 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC-------hhhHHHH
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN-------LTTYTVL 354 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~-------~~~y~~L 354 (631)
+..+...+...|++++|+..|+...+.. +.+...+..+...|...|++++|...+++..+..+.+ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 2234444444444444444444444444443221111 3445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 036072 355 LGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
...+.+.|++++|.+.|+...+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555556666666666555553
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00022 Score=61.85 Aligned_cols=107 Identities=7% Similarity=-0.076 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L 320 (631)
+...|..+...+...|++++|...|++..+..+.+ ..++..+..++...|++++|+..++...+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 46667777777777777777777777777665433 4566666666666666666666666666543 3345555556
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
..+|...|++++|...|++..+..+.+...+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 6666666666666666666554333333333
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=0.00013 Score=61.69 Aligned_cols=112 Identities=8% Similarity=0.022 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcC----HHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAG----VDTIN 318 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~----~~~~~ 318 (631)
...|..+...+...|++++|...|++.....+.+..++..+...+...|++++|+..++...+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999999988877888999999999999999999999999987631 112 77888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 319 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
.+..+|...|++++|...|+...+.. |+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 89999999999999999999987643 466555555443
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00049 Score=59.57 Aligned_cols=98 Identities=10% Similarity=-0.047 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (631)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.... +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4555666666666777777777777776654 344 456666666677777777777777766654322 456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 543 VLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 543 ~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666677777777777777766654
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00032 Score=59.95 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC--CPD----DNSYTVL 544 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~l 544 (631)
+..+-..+.+.|++++|+..|++.++.. +-+...|+.+..+|...|++++|++.+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444455555555555555554432 22344455555555555555555555555443210 001 1234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036072 545 IGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~m~~ 566 (631)
..++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555544
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.84 E-value=0.00028 Score=60.54 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 392 (631)
+...+..+...+...|++++|...|+......+.+...|..+..++...|++++|...++...+.. +.+...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444444444455555555555554443333344445555555555555555555555554432 1134444455555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 036072 393 LLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 393 ~~~~g~~~~A~~ll~~m~~ 411 (631)
+...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.83 E-value=0.00015 Score=59.36 Aligned_cols=98 Identities=14% Similarity=-0.034 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP--DVVAHNIMLE 391 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~ 391 (631)
...+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|...|++..+.. .. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34455566666777777777777777665555566677777777777777777777777777642 22 4666777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHHc
Q 036072 392 GLLKI-GKRSDAIKLFEVMKAK 412 (631)
Q Consensus 392 ~~~~~-g~~~~A~~ll~~m~~~ 412 (631)
++... |++++|.+.+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777777664
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0011 Score=69.19 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=141.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cC
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLS-----------------METFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AG 313 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~-----------------~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~ 313 (631)
.+.+.+.|++++|++.|..+.+..... ...+..+...|...|++++|.+.+..+.+.--. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455778899999999999998754311 125788899999999999999999887653111 11
Q ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHhc-----ccC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 036072 314 V----DTINCLLENLGRSKLPKEAQLLFDKLKH-----RFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--GF-- 379 (631)
Q Consensus 314 ~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-----~~~-p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~-- 379 (631)
. .+.+.+-..+...|+.+.|..++..... ... .-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1233333444566899999999988643 111 22457888999999999999999999988753 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 380 KP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 380 ~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
.+ ...+|..++..|...|++++|..+++...... ...+... -...+..+...+...+++++|...|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT-----------VAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------HHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH-----------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11 24578889999999999999999998876421 1111111 1234566778888899999999888
Q ss_pred HHHHH
Q 036072 457 KEMEE 461 (631)
Q Consensus 457 ~~m~~ 461 (631)
.+..+
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00013 Score=63.99 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKP-TIH 504 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 504 (631)
++..+...|...|++++|...+.+..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445556666667777777666665432100 11 124444555555556666666555554431 1000 023
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
.+..+..+|...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444555555555555554443
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.78 E-value=0.00016 Score=63.53 Aligned_cols=133 Identities=12% Similarity=0.026 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----H
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PT----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PD----D 538 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~ 538 (631)
.++..+...+...|++++|...+++..+..-. .+ ..++..+...|...|++++|...+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888899999999999999988753111 11 247888999999999999999999987753110 12 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKA-PVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.++..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778888899999999999999988753 2111 134578889999999999999999988654
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.00058 Score=57.78 Aligned_cols=92 Identities=10% Similarity=-0.033 Sum_probs=48.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHH
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSM---ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG---VDTINCLLENL 324 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~---~~~~~~Ll~~~ 324 (631)
+...+...|++++|...|+.+.+..+.+. .++..+..++...|++++|+..|+...+.. +.+ ...+..+..+|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 33445555666666666666555444322 455555555555555555555555555442 112 34444455555
Q ss_pred HcCCChHHHHHHHHHHhcc
Q 036072 325 GRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~ 343 (631)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00026 Score=60.52 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG--FKPD----VVAHNIML 390 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ty~~li 390 (631)
+..+...+.+.|++++|...|++..+..+.+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..+-
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34445555555555555555555544444445555555555556666666655555554321 1111 12445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
.++...|++++|++.|+.....
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666677776666666553
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.72 E-value=0.017 Score=57.91 Aligned_cols=149 Identities=8% Similarity=-0.019 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK-RSDAIKLF 406 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~ll 406 (631)
+++++.+++.+....+-+..+|+.-.-.+.+.+ .+++++.+++.+.+.. .-|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555555555666665555555555 3666666666666653 2255566555555555665 46677776
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR--------------RRMDIVYDLLKEMEERGCPPDGLTYN 472 (631)
Q Consensus 407 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~ 472 (631)
+.+.+..+. |... |+.....+.+. +.++++++.+......... |...|+
T Consensus 169 ~~~I~~~p~-N~SA---------------W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~ 231 (331)
T 3dss_A 169 DSLITRNFS-NYSS---------------WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWF 231 (331)
T ss_dssp HHHHHHCSC-CHHH---------------HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHHHHHCCC-CHHH---------------HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 666664322 2222 22221111111 3467777777777765433 666666
Q ss_pred HHHHHHHhc-----------CChhHHHHHHHHHHH
Q 036072 473 ALIKLMKIQ-----------KMPDEAVRIYKEMVR 496 (631)
Q Consensus 473 ~li~~~~~~-----------g~~~~A~~l~~~m~~ 496 (631)
.+-..+.+. +.++++++.++++.+
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 554444433 234455555555554
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.69 E-value=0.00028 Score=59.74 Aligned_cols=93 Identities=8% Similarity=-0.052 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
..+...+.+.|++++|+..|++..+..+.+...+..+..++...|++++|+..|+...+.. +.+...+..+..+|...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444555666666666666666666666566666666666666666666666666666553 334555555666666666
Q ss_pred ChHHHHHHHHHHhc
Q 036072 329 LPKEAQLLFDKLKH 342 (631)
Q Consensus 329 ~~~~A~~l~~~m~~ 342 (631)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.0004 Score=73.79 Aligned_cols=123 Identities=11% Similarity=-0.038 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---------------METFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---------------~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
...|..+...+.+.|++++|...|++..+....+ ..+|..+..+|.+.|++++|+..|+..++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3456677777777888888888887777654432 3455555555555555555555555555543
Q ss_pred CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH
Q 036072 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 310 ~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
+.+...|..+..+|...|++++|...|++..+..+.+..++..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554443334445555555555555544443
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.65 E-value=0.063 Score=53.74 Aligned_cols=232 Identities=9% Similarity=0.055 Sum_probs=146.2
Q ss_pred hcCChh-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 257 RARQFE-TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE----------RKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 257 ~~g~~~-~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~----------~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
+.|.+. +|+.+++.+...++-+..+|+.=-..+...+. +++++.+++.+.... +-+..+|+.-.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 345544 78888888888887666666544333333332 678888888888765 567778887666666
Q ss_pred cCC--ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------
Q 036072 326 RSK--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI------ 396 (631)
Q Consensus 326 ~~g--~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~------ 396 (631)
+.+ .++++..+++.+.+..+-|..+|+--.-.+...|. ++++++.++.+.+..+. |..+|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 666 48899999999988777788888888888888888 68999999999987543 777787766666554
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 036072 397 --------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468 (631)
Q Consensus 397 --------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 468 (631)
+.++++++.+......... |...|+.+-..+...... +.+ .-.+.+.++++++.++++.+.. ||.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~--~~~--~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR--CEL--SVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG--GGC--CHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc--ccc--chHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 4578888888888775322 333333221111111000 000 0001145788999999988763 443
Q ss_pred -HHHHHHHH---HHHhcCChhHHHHHHHHHHHC
Q 036072 469 -LTYNALIK---LMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 469 -~t~~~li~---~~~~~g~~~~A~~l~~~m~~~ 497 (631)
..+..++. +....+..+++...+.++++.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22222221 111345555666666666653
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.65 E-value=0.00013 Score=78.08 Aligned_cols=120 Identities=8% Similarity=-0.121 Sum_probs=95.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
...+.+.|++++|...|++..+..+.+..++..+..+|...|++++|++.++...+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445677899999999999988887788899999999999999999999999998875 557788888899999999999
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGG--WCRVKNLMEAGRVWN 372 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~--~~~~g~~~~A~~l~~ 372 (631)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998876555556666666666 788899999999888
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.64 E-value=0.0004 Score=74.28 Aligned_cols=121 Identities=10% Similarity=0.050 Sum_probs=95.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
+...+.+.|++++|.+.|++..+... -+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456778999999999999988633 368899999999999999999999999999874 3467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGG--LISQDRSGEAYKYLE 562 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~ll~ 562 (631)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999886432 33455555555 888899999999988
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.64 E-value=0.00034 Score=59.24 Aligned_cols=91 Identities=11% Similarity=-0.079 Sum_probs=49.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++..+... -+...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 344455555555555555555544444555555555555555555555555555555421 1344555555555555666
Q ss_pred HHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKA 411 (631)
Q Consensus 400 ~~A~~ll~~m~~ 411 (631)
++|+..++...+
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.63 E-value=0.00086 Score=59.68 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRS--------G---------FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~--------g---------~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+......+.+.|++++|+..|.+.++. . -..+...|..+..+|.+.|++++|...+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666777777777777766653 0 011123455555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.... +...|..+..+|...|++++|...|++.+..
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4322 4455555555555555555555555555543
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00051 Score=70.79 Aligned_cols=138 Identities=12% Similarity=-0.032 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+.+.|++++|+..|++..+.-. ....... .+...+.. +.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-----------~~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-----------GSRAAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-----------cCccccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4466677778888888888888887765200 0000000 00000000 123344555555555
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
+.|++++|...+++..+..+.+...|..+..+|...|++++|...|++..+.. .-+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444445555555555666666666666665555532 113444444555555555554443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.58 E-value=0.0015 Score=55.16 Aligned_cols=93 Identities=14% Similarity=0.044 Sum_probs=56.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHH
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGV---DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGG 357 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~---~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~ 357 (631)
.+...+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...|+.+.+..+.+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455666677777777777666543 1222 355556666666677777777666665544334 4456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 036072 358 WCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~ 377 (631)
+.+.|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.56 E-value=0.00087 Score=69.01 Aligned_cols=91 Identities=7% Similarity=-0.052 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 502 ~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
+..+|..+..+|.+.|++++|...+++.++.... +...|..+..+|...|++++|++.|+++.+.. +-+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777777788888888888888887765432 56777777778888888888888888877653 234555666666
Q ss_pred HHHhcCCHHHHHH
Q 036072 582 DLSRAGRSYVLDE 594 (631)
Q Consensus 582 ~~~~~g~~~~A~~ 594 (631)
++.+.++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.56 E-value=0.00099 Score=70.74 Aligned_cols=124 Identities=6% Similarity=-0.093 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--------------GLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
....|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456677777788888888888888887765422111 344444555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 498 g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
. +.+...|..+..+|...|++++|...|++.++.... +...+..+..++...++.++|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 2 223444555555555555555555555555443211 233444444444444444433
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.51 E-value=0.00023 Score=59.67 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=52.6
Q ss_pred cCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
.|++++|+..|++..+.+ -+-+...+..+..+|...|++++|...|++.++.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666643 1223455666666777777777777777777665433 4666666666777777777777
Q ss_pred HHHHHHHHC
Q 036072 559 KYLEEMLEK 567 (631)
Q Consensus 559 ~ll~~m~~~ 567 (631)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.48 E-value=0.00021 Score=59.87 Aligned_cols=86 Identities=9% Similarity=-0.036 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 292 AKERKKAVAIFELMNKYK--FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g--~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
.|++++|+..|+...+.+ -+.+...+..+..+|...|++++|...|++..+..+.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555542 122344455555555666666666666666555444455556666666666666666666
Q ss_pred HHHHHHHc
Q 036072 370 VWNEMIDK 377 (631)
Q Consensus 370 l~~~m~~~ 377 (631)
.|++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.46 E-value=0.00072 Score=60.20 Aligned_cols=96 Identities=6% Similarity=-0.042 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEK------------------GLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~------------------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
...|...-..+.+.|++++|+..|++.... ......+|..+..+|...|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666677777888888888888776654 11122344444445555555555555555444
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~ 341 (631)
+.. +.+...|..+..+|...|++++|...|+...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 432 2334444444444444455555544444443
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.39 E-value=0.0022 Score=55.58 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ----TGNYEMG 522 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~----~g~~~~A 522 (631)
+++++|.+.|++..+.|. ++.. |-..|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356666666666666652 2222 4444445555666666666666654 44555555556655 5566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g 568 (631)
.+.|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666554 45555555555555 566666666666666554
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.0037 Score=54.11 Aligned_cols=113 Identities=9% Similarity=-0.114 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEA 557 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A 557 (631)
++.++|.++|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46789999999999988 44443 7777777888999999999999875 77888888888888 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 605 (631)
.++|++..+.| +...+..|...|.. .++.++|.+++++.-+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999987 56788889999998 89999999999999888854
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.27 E-value=0.0007 Score=68.77 Aligned_cols=147 Identities=8% Similarity=-0.106 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+.+.|++++|...|++.......+. .+...++.+++...+. ...|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4466677777888999999999988776543111 1112233333322221 136677777888
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHHcCCHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEG-LLKIGKRSDAI 403 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~-~~~~g~~~~A~ 403 (631)
+.|++++|...+++..+..+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877665667778888888888888888888888887654 333 3344444433 23345667777
Q ss_pred HHHHHHHHc
Q 036072 404 KLFEVMKAK 412 (631)
Q Consensus 404 ~ll~~m~~~ 412 (631)
.+|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 788777654
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00036 Score=57.26 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC------HHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG------VDTI 317 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~------~~~~ 317 (631)
+...|..+...+.+.|++++|+..|++..+..+.+..++..+..++...|++++|++.|+...+.. +.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 356677777888888888888888888887777777788888888888888888888888887763 222 3444
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~ 337 (631)
..+..++...|+.+.|...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 44555555555544444333
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.23 E-value=0.0011 Score=70.82 Aligned_cols=124 Identities=8% Similarity=-0.079 Sum_probs=79.7
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRS---GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC-CPD-DNSYTV 543 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~ 543 (631)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666542 1111 2456777777777788888877777766542 21 122 356777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEK---GMKAP----VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
|...|...|++++|..++++.++- -+.|+ ..+...+..++...|.+++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887776532 11222 22355666777778888888888888875
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.22 E-value=0.016 Score=62.97 Aligned_cols=174 Identities=10% Similarity=0.032 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCC
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR----------MDIVYDLLKEMEERGCPPD 467 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~ 467 (631)
.-++|++.++.+... .|+ +..+|+.--..+...|+ ++++++.++.+.+...+ +
T Consensus 44 ~~eeal~~~~~~l~~--nP~--------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~ 106 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPD--------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-S 106 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred CCHHHHHHHHHHHHH--Cch--------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-C
Confidence 346778888888774 333 22233333333334444 89999999999887655 7
Q ss_pred HHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 468 GLTYNALIKLMKIQK--MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 468 ~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
..+|+.-.-++.+.+ +++++++.++++.+.. .-|...|+.-..++.+.| .++++.+.++++++..+. |...|+..
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r 184 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHH
Confidence 788888777888888 6699999999999875 447888888888888888 899999999999987665 88899888
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036072 545 IGGLISQ--------------DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 545 i~~~~~~--------------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (631)
...+.+. +.+++|++++++++... +-+...|..+...+.+.++.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 8777763 55789999999988764 4467778888887777776433
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.19 E-value=0.0012 Score=67.06 Aligned_cols=144 Identities=5% Similarity=-0.106 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
+..+...+.+.|++++|...|.+..+. .|+... +...++.+++...+. ...|..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 445567788889999999999987764 233321 112222222222111 1255666666667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD-LSRAGRSYVLDE 594 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~ 594 (631)
.|++++|...+++.++.... +...|..+..+|...|++++|...|+++++.. +-+...+..+... ....+..+.+.+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766664322 56666666677777777777777777665432 1122333333333 223344556666
Q ss_pred HHHHHH
Q 036072 595 LAQKMR 600 (631)
Q Consensus 595 l~~~m~ 600 (631)
++++|-
T Consensus 321 ~~~~~l 326 (338)
T 2if4_A 321 MYKGIF 326 (338)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.14 E-value=0.0017 Score=69.33 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=97.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CC-CHHH
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEER---GCPP----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-----GF-KP-TIHT 505 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p-~~~t 505 (631)
+..+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|+.++++..+. |- .| ...+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999999887643 1222 2457899999999999999999999987742 21 12 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 506 YNMIMKSYFQTGNYEMGRKVWDEMIRR-----GCC-PD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 506 ~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
++.|...|...|++++|..++++..+. |.. |+ ..+.+.+-.++...+.+++|..++.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987752 432 22 344566777777889999999999998763
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.14 E-value=0.0067 Score=53.63 Aligned_cols=96 Identities=14% Similarity=0.000 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 036072 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP------DD-----NSYTVLIGGLISQDRSGEAYKYLEEMLEK-----GM 569 (631)
Q Consensus 506 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~-----~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g~ 569 (631)
+......+.+.|++++|...|++.++..... +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777666666542210 22 27777888888888888888888888764 12
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 570 KAP-VLDY----NKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 570 ~p~-~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.|+ ...| .....++...|++++|++.|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 454 3456 7888889999999999998887654
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.11 E-value=0.034 Score=60.52 Aligned_cols=173 Identities=9% Similarity=-0.012 Sum_probs=131.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE----------RKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~----------~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
....++|++.++++...++-...+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3345678889999988888777788776666666666 889999999998875 56777888777777788
Q ss_pred C--ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 036072 328 K--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK-NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-------- 396 (631)
Q Consensus 328 g--~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-------- 396 (631)
+ +++++...++++.+..+-|..+|+.-...+.+.| .++++++.++++.+.... |..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 8 6699999999998877778888888888888888 889999999999876433 777787777766663
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC
Q 036072 397 ------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448 (631)
Q Consensus 397 ------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~ 448 (631)
+.++++++.+...... .|+ +..+|+-+-..+.+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~--------------~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPN--------------DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSS--------------CSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCC--------------CccHHHHHHHHHhcCCC
Confidence 4578888888888764 344 44455555555555555
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00038 Score=57.06 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|++.+++.++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555555566666666666666666554322 4555566666666666666666666666554
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.09 E-value=0.0072 Score=53.41 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKP------T-----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC 534 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~ 534 (631)
+......+.+.|++++|+..|++.++..-.. + ...|+.+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344445566677777777777766532110 2 237888888888889999888888888875 12
Q ss_pred CC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 535 CP-DDNSY----TVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 535 ~p-~~~t~----~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.| +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34 45677 8888899999999999999998875
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.01 E-value=0.0036 Score=51.84 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 036072 265 VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339 (631)
Q Consensus 265 ~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~ 339 (631)
+..|++..+..+.+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|...|++
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444433333334444444444444444444444444444332 22333344444444444444444444443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.93 E-value=0.0044 Score=51.29 Aligned_cols=80 Identities=9% Similarity=-0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|++.|+...+.. +.+...+..+...|...|++++|...|++..+..+.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777777654 456777888888888888888888888887766566677888888888888888888888887765
Q ss_pred c
Q 036072 377 K 377 (631)
Q Consensus 377 ~ 377 (631)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.0074 Score=47.02 Aligned_cols=77 Identities=8% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
..|..+...+...|++++|...|++..+..+.+..++..+..++...|++++|++.|+...+.. +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4455555556666666666666666655555455555555555666666666666655555542 2234444444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.83 E-value=0.012 Score=45.83 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
.+..+...+...|++++|...|++..+..+.+..++..+...+.+.|++++|...|++..+.. +-+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344444445555555555555555444333344455555555555555555555555555432 113334444444433
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.03 Score=63.60 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~ 525 (631)
.|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...|...|+.+...++
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 35666665554322 2455666666666666666666666665532 33444455556665554444
Q ss_pred HHHHH
Q 036072 526 WDEMI 530 (631)
Q Consensus 526 ~~~m~ 530 (631)
-+...
T Consensus 730 ~~~a~ 734 (814)
T 3mkq_A 730 AKDAE 734 (814)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.03 Score=63.56 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=98.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
.++..+.+.|.+++|.++.+.-.. - .......|++++|.++.+.+ .+...|..|...+.+.+
T Consensus 634 ~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 456667778899998877642211 1 23345789999999987543 46789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHH
Q 036072 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL-------DYNKFAADLSRAGRSY 590 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~-------~~~~li~~~~~~g~~~ 590 (631)
+++.|++.|..+.. |..+...|...|+.+...++.+.....|..-... .+...++.|.+.++++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~ 766 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFS 766 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChH
Confidence 99999999998753 2334444445566665555555555544110000 1233444445555555
Q ss_pred HHHHHHHHHHhcCCCc--hHHHHHHHHHhhhhhh
Q 036072 591 VLDELAQKMRFSGKFE--VSNVLARWAETTKNRV 622 (631)
Q Consensus 591 ~A~~l~~~m~~~g~~~--~~~~l~~~~~~~k~~~ 622 (631)
+|..+.++ .+... +..++..|.+-+..+.
T Consensus 767 ~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~ 797 (814)
T 3mkq_A 767 EAAFLGST---YGLGDNEVNDIVTKWKENLILNG 797 (814)
T ss_dssp HHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH---hCCChHHHHHHHHHHHHHHHhcc
Confidence 55554443 45556 7789999988776554
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.56 E-value=0.0063 Score=53.67 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=56.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN----------YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
.+.+++|.+.++...+.. +-+...|+.+..++...++ +++|+..|++.++.... +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 344555555555555542 2245555555555555443 34777777777665433 55666677777766
Q ss_pred c-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 551 Q-----------DRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 551 ~-----------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
. |++++|++.|++.++. .|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5 3677888888877774 455555544333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.38 E-value=0.014 Score=46.96 Aligned_cols=64 Identities=19% Similarity=0.094 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+...+..+..+|...|++++|...|++..+..+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666667777777777777766655555566677777777777777777777766554
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.30 E-value=0.0087 Score=52.79 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~ 335 (631)
.+.+++++|...++...+..+.+.+.|..+..++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 344566667777777766666666666666666666655442222111 1446666
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRV-----------KNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 391 (631)
.|++..+-.+.+..+|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 66665554444555666666666655 4677777777777764 566555544443
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.17 E-value=0.022 Score=45.77 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
+...|..+...+.+.|++++|+..|++..+..+.+..+|..+..+|...|++++|++.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666667777777777777777777766665566666677777777777777776666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.78 E-value=0.18 Score=50.79 Aligned_cols=151 Identities=8% Similarity=-0.073 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHh--cC---ChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHH
Q 036072 243 HNSRTYNSMMSILGR--AR---QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317 (631)
Q Consensus 243 p~~~~y~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~ 317 (631)
.|...|...+++... .+ ++.+|..+|++..+..+-....|..+.-+|.. . ...+ ..+....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~----------~---~~~~-~~~~~~~ 257 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV----------R---HSQH-PLDEKQL 257 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------H---HHHS-CCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------H---hccC-CCchhhH
Confidence 456777777766542 22 35678888888888877666666665555541 0 0000 0111100
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
..+ ..+.+... .....+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|
T Consensus 258 ~~l----------~~a~~a~~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 258 AAL----------NTEIDNIV-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHH----------HHHHHHHH-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTT
T ss_pred HHH----------HHHHHHHH-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCC
Confidence 000 11222111 112345678888888888888899999999999999875 78888877888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
++++|.+.|++.... .|...+|.
T Consensus 325 ~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 325 MNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCcChHH
Confidence 999999999988874 56665654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.60 E-value=0.051 Score=56.82 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=55.5
Q ss_pred cCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRS---GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC-CPD-DNSYTVLIG 546 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~li~ 546 (631)
.|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++++.++. |. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766541 1112 2456777777777788888887777776642 21 122 345777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 036072 547 GLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~ 566 (631)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777888777777777654
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.59 E-value=0.057 Score=56.41 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=63.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSG---FKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC-CPD-DNS 540 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g---~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t 540 (631)
+..+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|+.++++.++. |. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888877531 122 2466788888888888888888888877642 21 122 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888888888888888877654
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.49 E-value=0.065 Score=56.00 Aligned_cols=87 Identities=7% Similarity=-0.090 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRR---GCCPD----DNSYTVLIGGLISQDRSGEAYKYLEEMLEK-----G-MKAP-VLDYNKFA 580 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g-~~p~-~~~~~~li 580 (631)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++- | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987752 12222 467999999999999999999999998742 3 1233 34599999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 036072 581 ADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 581 ~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..|...|++++|+.++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.44 E-value=0.069 Score=55.76 Aligned_cols=92 Identities=10% Similarity=-0.098 Sum_probs=72.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRG---CCPD----DNSYTVLIGGLISQDRSGEAYKYLEEMLEK-----G-MKAP-VLD 575 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g-~~p~-~~~ 575 (631)
+..+...|++++|..++++..+.. +.|+ ..+++.|...|...|++++|+.++++++.- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999988641 2222 467899999999999999999999988742 2 2232 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 576 YNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
++.|...|...|++++|+.++++...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999987643
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.39 E-value=0.025 Score=44.91 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
...+.+.|++++|...|++..+..+.+.. .+..+..++...|++++|++.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455667777777777777666665666 66666667777777777777777666653
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.18 E-value=1.2 Score=37.47 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------------------- 70 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------------------- 70 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-----------------------
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-----------------------
Confidence 35555666666655543 24445555555555555555555554443221 11
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
...+|++......+-.+- -+...++..+..+...|.-++-.+++.++.. +.+|+....-.+..+|.+.|+..
T Consensus 71 --is~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 71 --LDKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp --GGGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred --cHhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchh
Confidence 112344444444443322 1444556666777777777777777777543 23566677777777777777777
Q ss_pred HHHHHHHHHHHcCCC
Q 036072 521 MGRKVWDEMIRRGCC 535 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~ 535 (631)
+|.+++.+..++|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 777777777777653
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.66 E-value=0.52 Score=47.52 Aligned_cols=73 Identities=8% Similarity=-0.122 Sum_probs=42.0
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
+.+..+|..+...+...|++++|...+++..... |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4455555555555555566666666666655432 45555555566666666666666666666653 4444444
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.44 E-value=0.23 Score=39.03 Aligned_cols=65 Identities=8% Similarity=-0.017 Sum_probs=42.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVD-TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~-~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
...+...|++++|+..|+...+.. +.+.. .+..+..+|...|++++|...|++..+..+.+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445666777777777777777654 34555 666777777777777777777777665444344433
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.23 E-value=1.1 Score=39.87 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=89.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
......|+++.|.++.+.+ -+...|..|-......|+++-|.+.|.+..+ +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455678999999887765 3788899999999999999999999887643 456666677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
...++-+.....| -++.....+...|+++++.++|.+. |..| --+......|..+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence 7776666555543 2455556677789999999888543 3222 11112233566778888877664
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.13 E-value=2.3 Score=35.87 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 415 (631)
+....+..++.....|.-++-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.+..+.|+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 445567778888888999999999988644 34677888888999999999999999999999998865
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.03 E-value=2 Score=38.20 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=45.5
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|....+ |..+.-.|.-.|+.+...++
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 345555555544433 2344555555555555555555555554443 23333444444554444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 371 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
-+.....| -++.....+...|+++++.++|.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333332 13344444445555555555553
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.32 E-value=0.7 Score=36.42 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 243 HNSRTYNSMMSILGRARQ---FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
.|...+..+..++...++ .++|..+|++..+..+.+..+...+...+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356666666666654433 6778888888887777777777777777778888888888888777753
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.08 E-value=0.57 Score=40.69 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG---NYEMGRKVWDEMIRRGCCP--DDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
.+.+-|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.. .| +...+-.|.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444332 45555555555555554 3445555555555542 12 223333344445555666666665
Q ss_pred HHHHHH
Q 036072 561 LEEMLE 566 (631)
Q Consensus 561 l~~m~~ 566 (631)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555555
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.89 E-value=1.1 Score=35.18 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=39.5
Q ss_pred cCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 312 AGVDTINCLLENLGRSKL---PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 312 ~~~~~~~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+...+..+..++...++ .++|..+|++..+..+.+......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555443332 466666666665555556666666666666666666666666666654
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.82 E-value=1 Score=36.06 Aligned_cols=65 Identities=6% Similarity=0.010 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEK-------GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
+...+..|...+.+.++++.|...|+...+. +.....++..+..++.+.|++++|+..++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445555666666666666666666665432 2233445666666666666666666666666554
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.44 E-value=0.86 Score=36.57 Aligned_cols=65 Identities=14% Similarity=-0.041 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYK------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g------~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
+...+..+...+...+++..|...|+...+.- -.....++..|..+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444555566666666666666665554421 012334444455555555555555555554443
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.31 E-value=12 Score=38.85 Aligned_cols=168 Identities=12% Similarity=0.100 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCcHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDK--GFKPD---VVAHNIMLEGLLKIGKRSDAIKLFEVMKAK----GPSPNVRS 420 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~ty~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~~~~ 420 (631)
....|...|...|++.+|.+++.++... |.... ...|...++.|...+++..|..++..+... ...|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l-- 216 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL-- 216 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH--
Confidence 4467888999999999999999998753 22111 346777889999999999999999886431 112221
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHH
Q 036072 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIK----LMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 421 ~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~----~~~~~g~~~~A~~l~~~m~ 495 (631)
....+...+..+...+++.+|...|.+..+. ...-|...+..++. ...-.+....-..+.....
T Consensus 217 -----------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~ 285 (445)
T 4b4t_P 217 -----------KLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ 285 (445)
T ss_dssp -----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH
T ss_pred -----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh
Confidence 1234556677788889999999888877543 11123322222211 1112222222223333333
Q ss_pred HCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 036072 496 RSGFKPTIHTYNMIMKSYFQT--GNYEMGRKVWDEMI 530 (631)
Q Consensus 496 ~~g~~p~~~t~~~Li~~~~~~--g~~~~A~~~~~~m~ 530 (631)
....-++...|..++.+|... .+++.+.+.|....
T Consensus 286 ~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 286 NDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred hcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 322235677888899988765 35676666665544
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.92 E-value=0.88 Score=39.49 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
|.-+|.+.|++++|.+.++.+.+
T Consensus 77 LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 77 LAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHh
Confidence 33344444444444444444444
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.79 E-value=1.7 Score=42.04 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHH
Q 036072 485 DEAVRIYKEMVRSGFKPT---IHTYNMIMKSYFQ-----TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-DRSG 555 (631)
Q Consensus 485 ~~A~~l~~~m~~~g~~p~---~~t~~~Li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~ 555 (631)
..|...+++.++. .|+ -..|..|...|.. -|+.++|.+.|++.++.+..-+..++..+...++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3455555555543 333 3456666666666 366677777776666643322355555556666653 6667
Q ss_pred HHHHHHHHHHHCCCC
Q 036072 556 EAYKYLEEMLEKGMK 570 (631)
Q Consensus 556 ~A~~ll~~m~~~g~~ 570 (631)
+|.+++++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777766665544
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.59 E-value=3.1 Score=35.80 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHcCCCh------HHHHHHHHHHhcccCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHHHHcC
Q 036072 312 AGVDTINCLLENLGRSKLP------KEAQLLFDKLKHRFTPNLT-TYTVLLGG------WCRVKNLMEAGRVWNEMIDKG 378 (631)
Q Consensus 312 ~~~~~~~~Ll~~~~~~g~~------~~A~~l~~~m~~~~~p~~~-~y~~Li~~------~~~~g~~~~A~~l~~~m~~~g 378 (631)
-|..+|-..+...-+.|+. +...++|++.....+|+.. .|...|.. +...++.++|.++|+.+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3455555555555555655 5666666666555555432 11111111 123478888999999887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc
Q 036072 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417 (631)
Q Consensus 379 ~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 417 (631)
+--...|......-.+.|+++.|.+++......+..|.
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 22366777777777788999999999998888766554
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.50 E-value=1.7 Score=42.13 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcccCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHH
Q 036072 331 KEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRV-----KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-GKRSD 401 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~ 401 (631)
..|...+++..+- .|+ -..|..|...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleL-DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDL-WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3444444444332 233 45778888888884 88888888888888753322466677777777774 88888
Q ss_pred HHHHHHHHHHcCCC--CcHHHHH
Q 036072 402 AIKLFEVMKAKGPS--PNVRSYT 422 (631)
Q Consensus 402 A~~ll~~m~~~g~~--p~~~~~~ 422 (631)
+.+.+++....... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888876655 5544433
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.28 E-value=4.4 Score=34.90 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCH----HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC
Q 036072 467 DGLTYNALIKLMKIQKMP------DEAVRIYKEMVRSGFKPTI----HTYNMIMKS---YFQTGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~----~t~~~Li~~---~~~~g~~~~A~~~~~~m~~~g 533 (631)
|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|-.|.-- +...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555556555555666 6667777776653 34431 112111111 123478889999999887642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036072 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 534 ~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 571 (631)
-+- ...|.....--.++|+.+.|.+++.+.+..+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 6777777777778999999999999998877554
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.98 E-value=1.6 Score=48.42 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=81.2
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCC-CH----
Q 036072 437 TCLITGFGNRRR-MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM-PDEAVRIYKEMVRS------GFKP-TI---- 503 (631)
Q Consensus 437 ~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~p-~~---- 503 (631)
..++..+...++ ++.|.++|+++.+.....+......++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555555 68899999999887433222222334443333332 22455555554421 1111 11
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 504 ------HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 504 ------~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
.....=.+-|...|+++.|.++-++....-. -+..+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222224456678999999999999887532 26899999999999999999999999887
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.28 E-value=20 Score=36.31 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhccCch-------hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC----C
Q 036072 211 HNLVVDVLERFRHARR-------PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GL----L 277 (631)
Q Consensus 211 ~~~~~~vl~~~~~~~~-------~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~--g~----~ 277 (631)
...+..++..+...+. ...+.++|.......-.....=..++..|...|++.+|..++.++.+. .. .
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~ 137 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL 137 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh
Confidence 5557777777755432 366778887644311000112236788899999999999988888763 11 1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhC--CCCcCHHHHHHH----HHHHH-cCCChHHHHHHHHHHh
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKY--KFKAGVDTINCL----LENLG-RSKLPKEAQLLFDKLK 341 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~--g~~~~~~~~~~L----l~~~~-~~g~~~~A~~l~~~m~ 341 (631)
-.+++..-+..|...++..++...+...... .+.+++.....+ ...+. ..+++..|...|-+.-
T Consensus 138 llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 138 LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2357777888888999999999888777643 222333332222 12344 6788888877776653
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.96 E-value=2.8 Score=35.00 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=43.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM---GRKVWDEMIRRGCCP--DDNSYTVLIGGLISQDRSG 555 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~ 555 (631)
...+..+.+-|.+....|. ++..+-..+..++.+..+... ++.+++++.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344455555555444432 555555555556665554443 566666655542 11 2223333444555666666
Q ss_pred HHHHHHHHHHHC
Q 036072 556 EAYKYLEEMLEK 567 (631)
Q Consensus 556 ~A~~ll~~m~~~ 567 (631)
+|.++++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.85 E-value=1.7 Score=34.50 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 295 ~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
.-++.+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+......+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3345555566666666677777777777777777777777777776655444444565555
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.02 E-value=1.7 Score=44.45 Aligned_cols=73 Identities=7% Similarity=0.059 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----CCCCcCHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-----YKFKAGVDTIN 318 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~-----~g~~~~~~~~~ 318 (631)
.....++..+...|+++++...++.+....+.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 45566777778889999999988888888888888999999999999999999988887754 48888776543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.57 E-value=2.7 Score=46.71 Aligned_cols=128 Identities=11% Similarity=0.034 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHcc-CHHHHHHHHHHHHhC------CCC-cCH---
Q 036072 248 YNSMMSILGRARQ-FETMVSMLEEMGEKGLLSMETFK-IAMNAFAAAK-ERKKAVAIFELMNKY------KFK-AGV--- 314 (631)
Q Consensus 248 y~~li~~~~~~g~-~~~A~~l~~~m~~~g~~~~~~~~-~li~~~~~~g-~~~~A~~v~~~m~~~------g~~-~~~--- 314 (631)
-..+++.+...++ .+.|..+|+++.+..+.....+. .++..+...+ +--+|++++.+..+. ... .+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3555666666666 57899999999887664333333 2333332222 233455555444321 111 111
Q ss_pred -------HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 315 -------DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 315 -------~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
...+.-.+.+...|+++.|+++-++...-.+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222334567778999999999999887767778899999999999999999999998874
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.34 E-value=29 Score=35.84 Aligned_cols=189 Identities=12% Similarity=0.084 Sum_probs=119.7
Q ss_pred CChHHHHHHHHHHhcc------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHH
Q 036072 328 KLPKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
|+++.|.+.+..+.+. ..........++..|.+.++++...+.+..+... |..+.. ...+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~------ 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVM------ 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH------
Confidence 6788888877666532 3334566888999999999999998888776654 332222 223333222
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC-
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPD- 467 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~- 467 (631)
..+... ..++..+...++..+... .......|...|...|++.+|.+++..+... |....
T Consensus 102 ---~~l~~~----~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 102 ---EYLKSS----KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp ---HHHHHH----CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred ---HHHhcC----CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 222111 112222232232222111 1223456788899999999999999998642 32222
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 468 --GLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 468 --~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
...+...+..|...+++.+|..++.++.. ....|+ ...|...+..+...+++.+|...|.++.+
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 24677778889999999999999998753 222222 34567778888889999999888887764
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.23 E-value=23 Score=34.57 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=14.1
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 036072 548 LISQDRSGEAYKYLEEML 565 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~ 565 (631)
|...|+...|..+++...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 456789999999888765
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.59 E-value=2.4 Score=43.28 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-----KGFKPDVVAH 386 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ty 386 (631)
..++..+...|+.++|...+..+....+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44566667778888887777777666666777788888888888888888887777653 3777776543
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.49 E-value=5.8 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|.-++.+.|++++|.+.++.+.+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555555555555
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.85 E-value=33 Score=40.34 Aligned_cols=61 Identities=15% Similarity=-0.018 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV----VAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
|..++..+.+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 344444555555555555444444332111111 1344455555555555555555544433
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.61 E-value=4.7 Score=33.81 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
+..+-++.+....+.|++.+....+++|.+.+++..|.++|+.++.+..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44555555666666777777777777777777777777777777665555555566555
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.56 E-value=44 Score=37.95 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=89.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL--MKIQKMPDEAVRIYKEMVRSGFKPTIHTYN--MIMKSYF 514 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~Li~~~~ 514 (631)
|...+...|+.+....++..+.+. .+..+...+..+ +...|+.+.+..+.+.+.... .|....-. ++.-+|+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAya 571 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 344456677877777777776654 233333334443 446788888888888887642 23332222 3345566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS-YVLD 593 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~ 593 (631)
..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|...--..+..+....|.. .+|.
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7788877777888887642 1133333333334445677666677776555543 33333333444444444443 4566
Q ss_pred HHHHHHHh
Q 036072 594 ELAQKMRF 601 (631)
Q Consensus 594 ~l~~~m~~ 601 (631)
..++++..
T Consensus 650 d~L~~L~~ 657 (963)
T 4ady_A 650 DVLDPLTK 657 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 66666643
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.22 E-value=48 Score=32.66 Aligned_cols=111 Identities=6% Similarity=0.009 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHH----HHHHHhCCCCcCHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI----FELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v----~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
+|-++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++.+.+.++++|......|+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4555666677778888888776442 2233444555444333 355555677777777777777
Q ss_pred HHHcCCChH-HHHHHHHHHh----c-c--cCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 323 NLGRSKLPK-EAQLLFDKLK----H-R--FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 323 ~~~~~g~~~-~A~~l~~~m~----~-~--~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.+.....-+ .=.++.+.+. + + -.-|......+...|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666554321 1122222221 1 1 1235555666667777777776666655
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.21 E-value=53 Score=38.52 Aligned_cols=226 Identities=11% Similarity=0.010 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP------NVRSYTIMIW 426 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p------~~~~~~~li~ 426 (631)
.++..+.+.+.++.+.++.... +-+....-.+..+|...|++++|.+.|.+... |+.. .......+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3445555666666665544332 22444444566788899999999999976532 2211 1112222221
Q ss_pred HHhhc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 427 KFCKQ--NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500 (631)
Q Consensus 427 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 500 (631)
..... -..-|.-++..+-+.+.++.+.++-....+....-+. ..|..+..++...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 11111 2234667788888888888888877766554222222 25788899999999999999999888765443
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 036072 501 PTIHTYNMIMKSYFQTGNYEMG------------RKVWDEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAY-KYLEEML 565 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g~~~~A------------~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~-~ll~~m~ 565 (631)
...+..|+..+|..|..+.- .+++..-.+. .+...+.-|..|-.-+...|++.+|- -+|+.+.
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 46677788777777665543 3333221111 11111234555655566777775444 4455544
Q ss_pred HCC---CCCC-------HHHHHHHHHHHHhc
Q 036072 566 EKG---MKAP-------VLDYNKFAADLSRA 586 (631)
Q Consensus 566 ~~g---~~p~-------~~~~~~li~~~~~~ 586 (631)
+.+ -... ...|..+|+++.-.
T Consensus 1049 RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1049 RYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 321 1111 23466667766554
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.94 E-value=71 Score=34.50 Aligned_cols=303 Identities=9% Similarity=-0.003 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..-..-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+=-........+..|+..+.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 3456667777778888776664432 13455555556677777888777777666653333345667888888888
Q ss_pred hcCCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc--CHHH
Q 036072 360 RVKNLME--AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ--NAAV 435 (631)
Q Consensus 360 ~~g~~~~--A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~--~~~~ 435 (631)
+.|.+.. ...=++.+...| +...-..++..+ . .+.....+.+..+.+. |. .+..++...... +...
T Consensus 148 ~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~---p~--~~~~~~~~~~~~~~~~~~ 217 (618)
T 1qsa_A 148 ASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN---PN--TVLTFARTTGATDFTRQM 217 (618)
T ss_dssp HTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC---GG--GHHHHHHHSCCCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC---hH--hHHHHHhccCCChhhHHH
Confidence 7775433 333344444433 111111111111 0 0010000111111111 10 000010000000 0011
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL----MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~----~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
+...+.-+.+. +.+.|...+....+... .+......+-.. ....+...++...+....... .+.....-.+.
T Consensus 218 ~~~~~~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r 293 (618)
T 1qsa_A 218 AAVAFASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHH
Confidence 11122233333 78889999988865432 244333333322 233342456666666655432 34444444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------CCCCC-------
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK------------GMKAP------- 572 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~------------g~~p~------- 572 (631)
...+.|+++.|...|+.|...... ...-.--+..++...|+.++|..+|.++... |.++.
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~ 372 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Confidence 556779999999999888653222 2333333555677889999999888776532 22110
Q ss_pred -----HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 573 -----VLD---YNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 573 -----~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
... -..-+..+...|....|...+..+...
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 001 112345567778888887777666543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.54 E-value=15 Score=29.17 Aligned_cols=47 Identities=6% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555566666666666666666666666666666666543
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.73 E-value=23 Score=29.67 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 499 FKPTIHTYNMIMKSYFQTGN---YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 499 ~~p~~~t~~~Li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
-.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-|+.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555555555566666554 3356666666665442112344445555666667777776666666653
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.16 E-value=16 Score=34.68 Aligned_cols=72 Identities=10% Similarity=-0.017 Sum_probs=55.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAGVDTINCLLEN 323 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~~~~~~~Ll~~ 323 (631)
+..+.+.|++++++.....-.+..+.+...-..++..+|-.|++++|.+-++.+.+..- .+....|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 34566789999999999999898888999999999999999999999988888877531 2233345555543
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.97 E-value=64 Score=31.39 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHH----HHHHHHhCCCCcCHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA----IFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~----v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
.|-++..-|.+.+++++|++++..- ...+.+.|+...|-+ +.+.+.+.+++++......|+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666666677777777766443 223344455544443 3455556677777777777777
Q ss_pred HHHcCCChH-HHHHHHHHHh----c-c--cCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 323 NLGRSKLPK-EAQLLFDKLK----H-R--FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 323 ~~~~~g~~~-~A~~l~~~m~----~-~--~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.+......+ .-.++++.+. + + -.-++.....+...|.+.+++.+|..-|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 665533211 1122223221 1 1 1235666777777777777777776655
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.99 E-value=33 Score=28.69 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 466 PDGLTYNALIKLMKIQKMP---DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
|+..+--.+.-++.+.... .+++.+++++.+.+-.-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444333333344444432 356666666665431112344455555666666666666666666654
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.71 E-value=24 Score=29.58 Aligned_cols=60 Identities=10% Similarity=0.230 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45555555556667777777777777777777777777777766654 2223444555543
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.56 E-value=27 Score=35.91 Aligned_cols=100 Identities=10% Similarity=0.005 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCcHHHHHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDK--GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK---GPSPNVRSYTIM 424 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~---g~~p~~~~~~~l 424 (631)
++..+...|.+.|++++|.+.|.++.+. +..--...+-.+|+.+...+++..+...+.+.... +..++.. +.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~--~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR--NRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH--HHH
Confidence 5666777777777777777777777754 22233456667777777888888887777776532 2223221 111
Q ss_pred HHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 425 i~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
..|. ...+...+++..|...|-+....
T Consensus 211 ---------k~~~--gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 ---------KTYY--GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ---------HHHH--HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred ---------HHHH--HHHHHHhChHHHHHHHHHHHhcc
Confidence 1111 22344567888888888776554
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.97 E-value=1.4e+02 Score=33.92 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=11.3
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~ 461 (631)
-+|+..|+.....+++..+.+
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHhcc
Confidence 345555555555555555554
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.83 E-value=18 Score=31.60 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=43.0
Q ss_pred CCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 240 GFAHNSRTY--NSMMSILGRARQFETMVSMLEEMGEK-----GLLSM----ETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 240 g~~p~~~~y--~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~~~----~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
|..|....| -.-++.+...+.++.|+-+.+.+... ...++ .++..+.+++...+++..|...|+..++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444444443 33467788889999988887775432 22233 3667778888899999999999988654
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.16 E-value=32 Score=27.15 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=34.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 036072 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWA 615 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~~ 615 (631)
.+...|++++|..+.+.+ ..||...|-.| +-.+.|..+.+...+.++..+|....-..-....
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg~p~~q~Fa~g~r 111 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLNRLARSQDPRIQTFVNGMR 111 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455666666666655443 25555555443 2346666666666666666666544433333333
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.32 E-value=39 Score=34.65 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHH----H
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRS--GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR---RGCCPDDN----S 540 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~----t 540 (631)
++..+...|.+.|+++.|.++|.++... +..--...+-.+++.+...+++..+...++++.. .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555566666666666666666542 2222244555566666666666666666665543 22222211 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
|..+ .+...+++.+|...|-+...
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhc
Confidence 1111 12245666666666655543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.26 E-value=1e+02 Score=31.02 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCcHHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAK--GPSPNVRSYTIMI 425 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~--g~~p~~~~~~~li 425 (631)
-++..|...|++.+|.+++..+.+.=-..| ...|..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i- 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL- 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH-
Confidence 577888888999999888888876411112 345666778888999999999998877543 222333332221
Q ss_pred HHHhhcCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChhHHHHHHH-HHHHC
Q 036072 426 WKFCKQNAAVYTCLITGFG-NRRRMDIVYDLLKEMEERGCPPD------GLTYNALIKLMKIQKMPDEAVRIYK-EMVRS 497 (631)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~li~~~~~~g~~~~A~~l~~-~m~~~ 497 (631)
. .+-...+. ..+++..|...|-+..+.--... ...|..|.. ... ++..+...++. .....
T Consensus 183 ~----------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~~~~~~ 250 (394)
T 3txn_A 183 D----------LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IML-GQSDDVNQLVSGKLAIT 250 (394)
T ss_dssp H----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHSHHHHT
T ss_pred H----------HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHc-CCHHHHHHHhccccccc
Confidence 1 11234455 67899999888876643211111 123333322 222 22222222221 21111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539 (631)
Q Consensus 498 g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (631)
-..|....+..++.+| ..+++.+...+++.... .+..|..
T Consensus 251 ~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 251 YSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp TCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred cCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 1346666666666654 55677766666665432 2344554
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.19 E-value=55 Score=27.74 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 500 KPTIHTYNMIMKSYFQTGN---YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 500 ~p~~~t~~~Li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.|+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5666666666667776654 3456677777766433223344445556677777777777777777774
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=67.62 E-value=24 Score=30.82 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=66.4
Q ss_pred cCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 462 RGCPPDGLTYN--ALIKLMKIQKMPDEAVRIYKEMVRS-GFKPT-------IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 462 ~g~~p~~~t~~--~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
.|+.|....|+ .-+..+...+.++.|+-+.+.+... +..|+ ..++..+.+++...+++..|...|++.+.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555544433 3355677788888888777776542 12333 23556677788888888888888887654
Q ss_pred c--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 532 R--GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 532 ~--g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
. .+.-+..++..+- ...... . ......+...--.+..+|.+.|++++|+.+++.++.+..
T Consensus 92 ~~k~l~k~~s~~~~~~---~~ss~p-~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---NSASTP-Q---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHHhcCCCcccccc---ccCCCc-c---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 2 1111111111110 000000 0 011222334444588888999999999999988765543
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.04 E-value=61 Score=27.47 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 466 PDGLTYNALIKLMKIQKMP---DEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
|+..+--.+..++.+.... .+++.+++++.+.+-.-.......|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444433344444444432 355556666555332112333444555566666666666666666654
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.70 E-value=32 Score=27.17 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=33.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 036072 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARW 614 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~ 614 (631)
.+...|++++|..+.+.+ ..||...|-.| +-.+.|..+.+...+.++..+|....-..-.+.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg~p~~q~Fa~g~ 109 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAGLGGSSDPALADFAAGM 109 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455666666666555433 25555555433 234666666666666666666654433333333
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.40 E-value=1.1e+02 Score=30.39 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45566677777777777777777654
No 267
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=64.25 E-value=53 Score=32.43 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=12.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
...++.-|...|+.++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344445555555555555555444
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.88 E-value=1.3e+02 Score=29.53 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHHHHHC------C--C------------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh---c
Q 036072 548 LISQDRSGEAYKYLEEMLEK------G--M------------KAPV--LDYNKFAADLSRAGRSYVLDELAQKMRF---S 602 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~~------g--~------------~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~---~ 602 (631)
|...++...|..+++...+. + + .|+. ..|..++-..+..+..+....+.++-.. .
T Consensus 197 yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~r 276 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNE 276 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 55568888888877666531 1 1 1221 2355656666666765444433333222 1
Q ss_pred CCCchHHHHHHHHHhhhhh
Q 036072 603 GKFEVSNVLARWAETTKNR 621 (631)
Q Consensus 603 g~~~~~~~l~~~~~~~k~~ 621 (631)
........+.+++++.-..
T Consensus 277 d~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 277 LNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp TTTTTHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 1113456666666666544
No 269
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=59.24 E-value=0.12 Score=53.45 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
++.||-.+-.+|...+++.-|.-.--.+.-. +| -...++..|-..|.+++.+.+++.-... -......|+.|--
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 5667777777777777665554433333211 11 1122344455555555555555544321 1133444444433
Q ss_pred HHhhc--------------------------CHHHHHHHHHHHhccCCHHHHH
Q 036072 427 KFCKQ--------------------------NAAVYTCLITGFGNRRRMDIVY 453 (631)
Q Consensus 427 ~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~ 453 (631)
.|++- ....|.-++-.|.+-.+++.|.
T Consensus 272 LYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33332 3456666677777766776554
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.40 E-value=2e+02 Score=30.92 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=43.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH
Q 036072 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316 (631)
Q Consensus 237 ~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~ 316 (631)
+.++.......=+.-+..+++.+++...+.++.. .+.+...-.....+....|+..+|......+-..| ......
T Consensus 64 ~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~ 138 (618)
T 1qsa_A 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNA 138 (618)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTH
T ss_pred HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHH
Confidence 4444333333344455556666666555543322 12344445555556666666655555555554444 333444
Q ss_pred HHHHHHHHHcCCC
Q 036072 317 INCLLENLGRSKL 329 (631)
Q Consensus 317 ~~~Ll~~~~~~g~ 329 (631)
+..|+..+.+.|.
T Consensus 139 c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 139 CDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 5555555554443
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.35 E-value=8.8 Score=36.22 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 036072 251 MMSILGRARQFETMVSMLE 269 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~ 269 (631)
.+...++.|+++.+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4444555666655444443
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.23 E-value=48 Score=27.49 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR--SGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~ll~~m~~~g~~p 571 (631)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.+. .+.+.+++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345677777777888888877777742211 123344444445544432 355666777776666444
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.15 E-value=89 Score=25.82 Aligned_cols=66 Identities=12% Similarity=-0.013 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCC
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--NLMEAGRVWNEMIDKGFKPD 382 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~p~ 382 (631)
.+.++.-|...|+.++|...++++.....-...++.++..++-+.+ ..+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3456666666777777777777765321112334444444444443 23556666666666655433
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.32 E-value=1.5e+02 Score=28.11 Aligned_cols=51 Identities=18% Similarity=0.030 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
+.|++++|+.....-++.. +-|...-..++..+|-.|++++|.+-++...+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555544444444431 22444444455555555555555554444443
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.74 E-value=1.2e+02 Score=26.31 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 262 ETMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 262 ~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
+.+.++|..|...|+ --...|......+-..|++.+|.++|..-++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 447788999999888 355678888888889999999999999999988777543
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.90 E-value=1.3e+02 Score=27.07 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=44.5
Q ss_pred cCChhHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC
Q 036072 258 ARQFETMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~ 313 (631)
.+...++.++|..|...|+ --...|......+...|++++|.++|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3446788899999988877 3556778888888888999999999988888876664
No 277
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=50.51 E-value=1.2e+02 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWN 372 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~ 372 (631)
+.+..+|..+... .....+|.-++..+.+...+-+....|+
T Consensus 140 ~~~~~~f~~~D~d-~dG~i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 140 QHVDVFFQKMDKN-KDGIVTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp HHHHHHHHHHCTT-CSSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCcEeHHHHHHHHhcChHHHHHHHHhh
Confidence 4444555554321 1123455555555554444444444444
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.48 E-value=70 Score=27.37 Aligned_cols=66 Identities=12% Similarity=-0.013 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCC
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--NLMEAGRVWNEMIDKGFKPD 382 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~p~ 382 (631)
.+.++.-|...|+.++|...++++.....-...++.++..++-+.+ ..+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3445666666677777777776664321112333444444444432 23456666666666554433
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.80 E-value=45 Score=28.59 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR--SGEAYKYLEEMLEKGMKAPVLD 575 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~ll~~m~~~g~~p~~~~ 575 (631)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 456788888888888888888888753211 133444555555555332 3567777777877775544333
No 280
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=49.59 E-value=25 Score=34.31 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 036072 249 NSMMSILGRARQFETMVSMLEE 270 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~ 270 (631)
+..+...++.|+.+.+..+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC
Confidence 3444455667777766666543
No 281
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=48.98 E-value=2.9 Score=43.50 Aligned_cols=334 Identities=10% Similarity=0.018 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------CCCHHHHHHHHHHHHHccCHHHHHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG---------------------LLSMETFKIAMNAFAAAKERKKAVA 300 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------~~~~~~~~~li~~~~~~g~~~~A~~ 300 (631)
.||..-...+-+-|-..|.++.|.-+|..+..-. --++.||..+-.+|...+.+..|.-
T Consensus 141 ~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 141 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 3555555666677777777777766666543210 1245678888888888888877655
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 036072 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GF 379 (631)
Q Consensus 301 v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~ 379 (631)
.--.++-.. .-...|+..|-..|.+++...+++.-...-.....+|+.|.-.|+|-. .++..+-++..-.+ ++
T Consensus 221 cGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNi 294 (624)
T 3lvg_A 221 CGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNI 294 (624)
T ss_dssp HHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCC
T ss_pred hcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccH
Confidence 433333211 112235666778888888888888765333456778888888888764 33333333222211 11
Q ss_pred CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH-H---Hc-------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHH
Q 036072 380 KP------DVVAHNIMLEGLLKIGKRSDAIKLFEVM-K---AK-------GPSPNVRSYTIMIWKFCKQNAAVYTCLITG 442 (631)
Q Consensus 380 ~p------~~~ty~~li~~~~~~g~~~~A~~ll~~m-~---~~-------g~~p~~~~~~~li~~~~~~~~~~~~~li~~ 442 (631)
+- ....|.-++-.|++-.++|.|...+-+- . +. .-..+...|-..|.-|....+...+-|+.+
T Consensus 295 pKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~v 374 (624)
T 3lvg_A 295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 374 (624)
T ss_dssp TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 10 2345677777777777777665432110 0 00 013466667777788888888888888888
Q ss_pred HhccCCHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHhcCChhHHH------------HHHHHHHHCCCC
Q 036072 443 FGNRRRMDIVYDLLKEMEERG----------CPPDGLTYNALIKLMKIQKMPDEAV------------RIYKEMVRSGFK 500 (631)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~g----------~~p~~~t~~~li~~~~~~g~~~~A~------------~l~~~m~~~g~~ 500 (631)
+...=|..++.++|+....-. -.-+...-.++-..|....+++.-. .+-.++.++.
T Consensus 375 L~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe-- 452 (624)
T 3lvg_A 375 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE-- 452 (624)
T ss_dssp HCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS--
T ss_pred ccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc--
Confidence 887777777777776532110 0112333344555666666655432 2333333322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFA 580 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li 580 (631)
-...-..-...|.+.++|+++..+.++ .+ .|.-.|.....+|+.+-|.++++-.++.| +...|...+
T Consensus 453 -L~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~L 519 (624)
T 3lvg_A 453 -LIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACL 519 (624)
T ss_dssp -SHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHH
T ss_pred -hHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHH
Confidence 122223334445567777777665331 11 12223444566788888888888877766 334566666
Q ss_pred HHHHhcCCHHHHHHHH
Q 036072 581 ADLSRAGRSYVLDELA 596 (631)
Q Consensus 581 ~~~~~~g~~~~A~~l~ 596 (631)
-.|...=++|.++++.
T Consensus 520 ytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 520 FTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHTSSSSSCHHHHHHH
T ss_pred HHHhhccChHHHHHHH
Confidence 6666666667776653
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.14 E-value=1.6e+02 Score=28.52 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
..+|.-|...|+.++|...++++......|.......-+..=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CCH--------HHHHHHHHHHHHcCCCCCH--------------------------------------------------
Q 036072 517 GNY--------EMGRKVWDEMIRRGCCPDD-------------------------------------------------- 538 (631)
Q Consensus 517 g~~--------~~A~~~~~~m~~~g~~p~~-------------------------------------------------- 538 (631)
.+. +..-.++..+...++-|-.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCchHHHHHHHH
Q 036072 539 -NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS--YVLDELAQKMRFSGKFEVSNVLARWA 615 (631)
Q Consensus 539 -~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~~~~~~l~~~~ 615 (631)
...+.++.-|...|+.+||...++++... ..-...++..+..++-+.++. +.+.+++..+...|....+.+...+.
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred Hhhh
Q 036072 616 ETTK 619 (631)
Q Consensus 616 ~~~k 619 (631)
+.+.
T Consensus 245 ~vl~ 248 (307)
T 2zu6_B 245 RIYN 248 (307)
T ss_dssp HHHH
T ss_pred HHHH
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.59 E-value=1.5e+02 Score=25.89 Aligned_cols=170 Identities=12% Similarity=0.012 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 417 ~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
+...+..+|..+...+..+-...+..+.+.+..+....+.+.+ . .++...-...+.++...+..+. ...+..+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~ 86 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERA-VEPLIKALK 86 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc
Confidence 3444444555554445555555555555555533333333322 2 2466666666666766666433 333333333
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 497 ~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
.++...-...+.++...++.+ +...+..+.. .++..+-...+.++.+.+.. ++...+.++.. .++..+-
T Consensus 87 ---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr 155 (201)
T 3ltj_A 87 ---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVR 155 (201)
T ss_dssp ---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHH
Confidence 356666667777777777653 3333333433 34666666667777776654 34444545443 3466666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 577 NKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
...+.++.+.|..+ +...+.++...+
T Consensus 156 ~~A~~aL~~~~~~~-~~~~L~~~l~d~ 181 (201)
T 3ltj_A 156 QSAADALGEIGGER-VRAAMEKLAETG 181 (201)
T ss_dssp HHHHHHHHHHCSHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCchh-HHHHHHHHHhCC
Confidence 67777777777644 444444444333
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.04 E-value=41 Score=35.27 Aligned_cols=64 Identities=17% Similarity=0.026 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhc--ccCCCh--hhHH-HHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTPNL--TTYT-VLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~--~~~p~~--~~y~-~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
...+|.+++.|...+.++.|..+.....- ...+|. ..|. -+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888888888889998888887641 111111 1222 2345566678888888888877654
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.45 E-value=1.1e+02 Score=26.61 Aligned_cols=51 Identities=8% Similarity=0.078 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 522 GRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
+..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666554433 34455555556666666666666666666665553
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.00 E-value=2.8e+02 Score=27.45 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR--SGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~ll~~m~~~g~~p~~~~~~~li~~ 582 (631)
..+.++.-|...|+.++|.+.++++..-.+. ...+..++..++-+.++ .+...+++..+...|+-........+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888889999999999999888632221 23445555555555433 35678888888888866655554444444
Q ss_pred HHh
Q 036072 583 LSR 585 (631)
Q Consensus 583 ~~~ 585 (631)
+..
T Consensus 298 l~~ 300 (358)
T 3eiq_C 298 YNE 300 (358)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 287
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=39.79 E-value=2.3e+02 Score=26.08 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m 374 (631)
+.+..+|..+... .....+|.-++..+.+...+.++...|+.+
T Consensus 213 ~~~~~~f~~~D~d-~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 213 EHVERFFQKMDRN-QDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHSCCS-TTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 3444555554321 112345666666666666666666655543
No 288
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=37.99 E-value=1.9e+02 Score=24.62 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHhhccC---chhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCHHHH
Q 036072 208 NLSHNLVVDVLERFRHA---RRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GLLSMETF 282 (631)
Q Consensus 208 ~~~~~~~~~vl~~~~~~---~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~~~ 282 (631)
.++...+..++..++.. ......+|..+-....-..+..-+..++..+......+....+|+.+-.. |.++..-+
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~ 114 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEM 114 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 57888888888877543 12355666665433333445566666666655555556677777777543 45676656
Q ss_pred HHHHHHHHH-ccC-----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 036072 283 KIAMNAFAA-AKE-----------RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339 (631)
Q Consensus 283 ~~li~~~~~-~g~-----------~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~ 339 (631)
..++..+.. .|. .+.+..+|..+...+ -...+|.-++..+.+....-.+...|+.
T Consensus 115 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 115 MDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 555554422 232 255667777765432 1223445555555554444455554443
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.81 E-value=1.4e+02 Score=25.44 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036072 522 GRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 571 (631)
+..+|..|..+|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555544433222 2334444444444455555555555544444444
No 290
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=36.05 E-value=1.6e+02 Score=23.27 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=5.8
Q ss_pred HhcCChhHHHHHH
Q 036072 256 GRARQFETMVSML 268 (631)
Q Consensus 256 ~~~g~~~~A~~l~ 268 (631)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3444444444443
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.28 E-value=2.1e+02 Score=24.39 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC
Q 036072 262 ETMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 262 ~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~ 313 (631)
+++.++|..|..+|+ --...|..-...+-..|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 447888888888877 3456777788888888888888888888888776663
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.68 E-value=87 Score=28.94 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=56.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH---HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVD---TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~---~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
..+...+..|+.+.+..++ +.|..++.. .-...+...+..|+.+-+..+++.-..-...+..-.+ .+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHH
Confidence 3455566777776544444 444333211 1123455556778877666555432111112222223 3344455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVVA--HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 416 (631)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..+
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~g~~~ 131 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA----LKFLYKRGANV 131 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHH----HHHHHHhCCCc
Confidence 66654 4445555665544211 1123444556676553 34444455444
No 293
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=33.63 E-value=2.4e+02 Score=25.91 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHhhccCc---hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCHHHH
Q 036072 208 NLSHNLVVDVLERFRHAR---RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGE--KGLLSMETF 282 (631)
Q Consensus 208 ~~~~~~~~~vl~~~~~~~---~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~--~g~~~~~~~ 282 (631)
.++...+..++..+.... .....+|..+-....-..+..-+..++..+......+.+..+|+.+-. .|.++..-+
T Consensus 108 ~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef 187 (256)
T 2jul_A 108 LVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEM 187 (256)
T ss_dssp SEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHH
T ss_pred cCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 578888888888775322 235567766543332334455555566555544445566777776643 345777766
Q ss_pred HHHHHHHHH-cc-----------CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 036072 283 KIAMNAFAA-AK-----------ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340 (631)
Q Consensus 283 ~~li~~~~~-~g-----------~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m 340 (631)
..++..+.. .| ..+.+..+|..+...+ -...++.-++..+.+...+-++...|+.+
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 188 LAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 666655432 23 2355666666665432 12235566666666676777776666543
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.17 E-value=4.4e+02 Score=27.50 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKPTI--HTY-NMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~--~t~-~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
..+|.+++.|...+.++.|..+..+..-- ...+|. .+| ..+...+.-.+++.+|.+.+.....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666666666666666666666655310 000111 112 23344555566666666666665543
No 295
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.98 E-value=66 Score=23.07 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK 293 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g 293 (631)
.++-+++.++...-.++++..++++.+.|.++.++|..-++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45667777777777888888888888888888888877777666543
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.54 E-value=98 Score=27.81 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=76.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHH
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGL-L---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT--INCLLENL 324 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~-~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~--~~~Ll~~~ 324 (631)
.+...++.|+.+.+..+++.+.+.+. + +.. -.+.+...+..|+.+ +++.+.+.|..++... -...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 34555677888888888877666554 1 211 122344445566654 4455555655443211 11234445
Q ss_pred HcCCChHHHHHHHHHHhc----ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcC
Q 036072 325 GRSKLPKEAQLLFDKLKH----RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA---HNIMLEGLLKIG 397 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~----~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g 397 (631)
+..|+.+-+..+++.... -...+..-.+. +...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 667887777777666431 11112222233 33444556654 4444555555544321 223445555667
Q ss_pred CHHHHHHHHHHHHHcCCCCc
Q 036072 398 KRSDAIKLFEVMKAKGPSPN 417 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~ 417 (631)
+.+-+. .+.+.|..++
T Consensus 162 ~~~~v~----~Ll~~g~~~~ 177 (241)
T 1k1a_A 162 SLSMVQ----LLLQHGANVN 177 (241)
T ss_dssp CHHHHH----HHHHTTCCTT
T ss_pred CHHHHH----HHHHcCCCCC
Confidence 765443 3444555543
No 297
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=32.38 E-value=1.6e+02 Score=23.31 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.9
Q ss_pred HHHHHHHhh
Q 036072 228 AFRFFCWAG 236 (631)
Q Consensus 228 A~~~f~~~~ 236 (631)
|.-+-+|+.
T Consensus 25 A~tIAdwL~ 33 (115)
T 2uwj_G 25 ALCIAEWLE 33 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 298
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=32.31 E-value=2.8e+02 Score=24.86 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 263 TMVSMLEEMGEK--GLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 263 ~A~~l~~~m~~~--g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.+..+|+.+-.. |.++..-|..++..+......++...+|+.+.
T Consensus 90 ~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D 135 (224)
T 1s1e_A 90 YAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 135 (224)
T ss_dssp HHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHHHHc
Confidence 344444444322 33455545444444443333344455555554
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.26 E-value=1.6e+02 Score=26.89 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 036072 556 EAYKYLEEMLEKGMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609 (631)
Q Consensus 556 ~A~~ll~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 609 (631)
++.++|..|...|+.-. ..-|......+...|++.+|.++++.-...+-.++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 44455555555544332 2334555555555555555555555554444443333
No 300
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.10 E-value=1.6e+02 Score=22.48 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 264 MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 264 A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
...+++.+.+.|+.+.+-+..+-.. ....++|..+++.+.+.| ..+|..++.++...+...-
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~---~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE---PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS---SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC---CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHH
Confidence 3456677777777766655554442 456667777777776543 4556666666666554433
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.90 E-value=2.6e+02 Score=25.77 Aligned_cols=91 Identities=7% Similarity=-0.016 Sum_probs=56.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRS--GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 547 (631)
-++.+....++++|..++++..+. +++. ........+..-.....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 477888899999999999887752 2222 1111222233333333333344445555 32 4466667777888
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 036072 548 LISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~~ 567 (631)
+.+.|+.++|.++|=+....
T Consensus 101 L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHH
Confidence 88999999999988776653
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.46 E-value=1.9e+02 Score=24.44 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=34.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 457 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345566666443 3334555555555666777777777766555566666666666666554
No 303
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.35 E-value=2.9e+02 Score=24.79 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036072 517 GNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 571 (631)
++..++..+|..|..+|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677777777776655433 4456666666667777777777777777766666
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.25 E-value=1.5e+02 Score=24.99 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 036072 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 269 ~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~ 330 (631)
+.+.+.|.-....-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34556666555555566666666666677777777777665556666665566666655543
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.93 E-value=2.8e+02 Score=25.54 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEER--GCPP----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~ 512 (631)
-++.+....++++|.+++++..+. +.+. ........+..-.....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 488999999999999999988753 3332 1122223333333333444455555555 33 4456667778889
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 036072 513 YFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~ 531 (631)
+.+.|+-++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 9999999999999987765
No 306
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=29.59 E-value=2.6e+02 Score=23.71 Aligned_cols=105 Identities=8% Similarity=0.039 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHc---
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR-RRMDIVYDLLKEMEER--- 462 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~--- 462 (631)
+.++..+...|-+|+.+.-+.+|... -+...+..++..|.......+..|-.+.... .+++.+......++-.
T Consensus 11 ~~~~~~l~~~g~LD~~f~qL~~L~~~---~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~ 87 (153)
T 3us6_A 11 VDYIKSMFMEGFLDGQFLQLQQLQDE---NNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSAS 87 (153)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHTCBT---TBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 33444445555555443333333221 2333444555555544444444444443321 1566665555555432
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 463 -GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 463 -g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
|.. .......-+..+++.|+.+.+...+..+.
T Consensus 88 lGa~-~l~~~c~~lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 88 IGAQ-RVKNSCVAFRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HTCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 221 12223333444455555555555555444
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.06 E-value=93 Score=24.19 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=35.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 036072 266 SMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334 (631)
Q Consensus 266 ~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~ 334 (631)
.+++.+.+.|+.+.+....+-. .......++|.++++.+.+.| ..+|..++.++...|...-|.
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 3566666777766555544432 001135666777777666654 234556666665555554443
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.58 E-value=2.2e+02 Score=29.23 Aligned_cols=92 Identities=7% Similarity=-0.016 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..-.+.+...|++++|.++--.....-.-+++|.+.+-..=...|...-.+..|..+.+.| ..+..----+++.-
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~v 439 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPV 439 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHH
Confidence 44455556667777888887777666554333466666555544444455555666666666655 33433223344444
Q ss_pred HcCCChHHHHHHH
Q 036072 325 GRSKLPKEAQLLF 337 (631)
Q Consensus 325 ~~~g~~~~A~~l~ 337 (631)
...|+.+..++.+
T Consensus 440 L~q~r~~llekWl 452 (494)
T 1bpo_A 440 LQQGRKQLLEKWL 452 (494)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 4444444444433
No 309
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.46 E-value=1.7e+02 Score=21.35 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 458 EMEERGCPPDGLTYNALIKLMKIQK-MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 458 ~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455666655443 33444444433 344566666666665555556666566666555553
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.44 E-value=1.5e+02 Score=24.81 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=31.4
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 270 EMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 270 ~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.+.+.|.-....-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 12 ~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344555533333344444554555555666666666665544555555555555555443
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.82 E-value=48 Score=29.05 Aligned_cols=152 Identities=7% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHhcCChhHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHcCCChH
Q 036072 255 LGRARQFETMVSMLEEMG-EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT--INCLLENLGRSKLPK 331 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~--~~~Ll~~~~~~g~~~ 331 (631)
.+..|+.+.+..++..-. ..+..+..-+ +.+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345566666555554321 1111111111 2233334455543 4444444554433211 112234445667777
Q ss_pred HHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHHHHcCC-HHHHHHH
Q 036072 332 EAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKP---DVVAHNIMLEGLLKIGK-RSDAIKL 405 (631)
Q Consensus 332 ~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p---~~~ty~~li~~~~~~g~-~~~A~~l 405 (631)
-+..+++.-... ...+..-.+ .+...+..|+.+-+..+++ .| ..+ |..-++.+. ..+..++ ...-.++
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALI-EAVGLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHH-HHHHSSCCSHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHH-HHHHhccchhhHHHH
Confidence 666666443211 111222222 2344555666654444443 33 222 222222233 3333444 3333556
Q ss_pred HHHHHHcCCCCc
Q 036072 406 FEVMKAKGPSPN 417 (631)
Q Consensus 406 l~~m~~~g~~p~ 417 (631)
++.+.+.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666667776654
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.78 E-value=18 Score=33.72 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=54.1
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCHHH-------HHHHHHHHH--cCCChHHHHHHHHHHhcc----------c-CC
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDT-------INCLLENLG--RSKLPKEAQLLFDKLKHR----------F-TP 346 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~-------~~~Ll~~~~--~~g~~~~A~~l~~~m~~~----------~-~p 346 (631)
...++.|+.+....+++.+.+.|...+... .+.|..+.. +.|+.+-+..+++.-... . ..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 334455666666666665555544443222 233333322 556666666666553210 0 01
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHH
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA----------------HNIMLEGLLKIGKRSDAIKL 405 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~A~~l 405 (631)
|..-++ .+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 90 d~~g~t-~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 90 YYRGQT-ALHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp SEESBC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred ccCCCC-HHHHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 112223 34445566776544 44445565555432 22344555667775544333
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.68 E-value=2.4e+02 Score=25.64 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHCCCCCHHH--------HHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 261 FETMVSMLEEMGEKGLLSMET--------FKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~--------~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
++.|+.+|+.+.+.-..+... -...+..|.+.|.+++|.++++.....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 566778888777665433221 123345566677777777777766553
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.41 E-value=5.5e+02 Score=26.08 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
.+......++.. ..|+..+++.+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 444455554444 35666666666666554
No 315
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.08 E-value=1.2e+02 Score=21.67 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 586 (631)
++.+++.++...-.++++..+.++.+.| ..+..+|..-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4555666666666666777777776666 44555665555555543
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.75 E-value=2.2e+02 Score=23.79 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 458 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566665543 223444444445555666666666665545555555555555555553
No 317
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.46 E-value=3.3e+02 Score=23.15 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHcCCC
Q 036072 450 DIVYDLLKEMEERGCP 465 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~ 465 (631)
+.+..+++.+.+.|..
T Consensus 47 ~~i~~vl~~l~~~g~l 62 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYL 62 (159)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCc
Confidence 3444444444444444
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.41 E-value=4e+02 Score=27.38 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
.+.+-|.++-. ..|++--...|..-.+.+...|++++|-++--... .|+--+..|++.+-.+=..-|...-...+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 35555555443 34555556666666777777788887777665433 234456666655554444445555566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
..+.+.|- .|..----+++.-...|+.+-..+.+. +..+..+...=+ + .+..+...|+.+|.+.....
T Consensus 419 ~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEeLGD-l----vk~~d~~LAl~IY~~a~~~~ 486 (494)
T 1bpo_A 419 GILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEELGD-L----VKSVDPTLALSVYLRANVPN 486 (494)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHHHHH-H----HHHHCSHHHHHHHHHHCCCC
T ss_pred HHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHHhHh-h----hhhcCHHHHHHHHHHcCCcH
Confidence 66666542 344333334444445555544333332 222333332211 1 14445566666666655443
No 319
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.26 E-value=2.5e+02 Score=21.90 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-----GMKAPVLDYNKF 579 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g~~p~~~~~~~l 579 (631)
|..+.+++...|+.|+..+..-++..|...+- .+.++.++.+.- |..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
No 320
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.62 E-value=74 Score=28.70 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHH
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLT--YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT--YNMIMKSYFQ 515 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~Li~~~~~ 515 (631)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3344555777777777776666554443211 1122333345565543 333344444433211 0122333345
Q ss_pred cCCHHHHHHHHHH
Q 036072 516 TGNYEMGRKVWDE 528 (631)
Q Consensus 516 ~g~~~~A~~~~~~ 528 (631)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5665544444443
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.27 E-value=1.9e+02 Score=23.77 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=37.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 036072 458 EMEERGCPPDGLTYNALIKLMKIQK-MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519 (631)
Q Consensus 458 ~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 519 (631)
.|.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3556777766543 33455555555 5667788888887776666666666666666666643
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.45 E-value=48 Score=29.86 Aligned_cols=15 Identities=0% Similarity=-0.208 Sum_probs=6.3
Q ss_pred HHHcCCChHHHHHHH
Q 036072 323 NLGRSKLPKEAQLLF 337 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~ 337 (631)
..+..|+.+-+..++
T Consensus 48 ~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 48 WAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 334444444443333
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.03 E-value=1.7e+02 Score=25.46 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=44.4
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHH-cCCHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA---HNIMLEGLLK-IGKRS 400 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~~~~~-~g~~~ 400 (631)
++.|+.+....++..-... .+...-.+.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+..
T Consensus 14 a~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 4556666655554432110 0101112344455556666666667777777776655321 1222222221 22344
Q ss_pred HHHHHHHHHHHcCCCCcH
Q 036072 401 DAIKLFEVMKAKGPSPNV 418 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~ 418 (631)
...++.+.+.+.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 455666667777766553
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.91 E-value=95 Score=27.00 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=32.6
Q ss_pred HHcCCChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA--HNIMLEGLLKIGKRS 400 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~ 400 (631)
.+..|+.+....++..-... ...+..-++. +...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 34556666666555433211 1112222222 33344555544 3334444454443221 112233444556655
Q ss_pred HHHHHH
Q 036072 401 DAIKLF 406 (631)
Q Consensus 401 ~A~~ll 406 (631)
-+..++
T Consensus 87 ~~~~Ll 92 (201)
T 3hra_A 87 ILAYML 92 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.89 E-value=6.3e+02 Score=25.62 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=32.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHCC
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-----GEAYKYLEEMLEKG 568 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-----~~A~~ll~~m~~~g 568 (631)
+.++.+.|..++..|.+.|..|....-..++.+...-|.- .-|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 3467888888888888877766655555555555544432 23444444444455
No 326
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Probab=21.68 E-value=4.3e+02 Score=23.50 Aligned_cols=62 Identities=6% Similarity=-0.037 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHcCCCCcHHHHHHHHHHHhh
Q 036072 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE----VMKAKGPSPNVRSYTIMIWKFCK 430 (631)
Q Consensus 365 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~----~m~~~g~~p~~~~~~~li~~~~~ 430 (631)
+.+.++|..+.+.+.-. ...|...+...|+.+-...++. ++.+.--.+-...|..++...+.
T Consensus 40 e~i~dlf~~L~e~~~l~----~~fL~ELL~~I~R~DLL~~~l~~~~~~ve~~l~~~~is~yR~LL~~Ise 105 (195)
T 2bbr_A 40 TTVTQALCSLSQQRKLT----LAALVEMLYVLQRMDLLKSRFGLSKEGAEQLLGTSFLTRYRKLMVCVGE 105 (195)
T ss_dssp CSHHHHHHHHHHTTCCC----HHHHHHHHHHTTCHHHHHHHHCCCHHHHHTTTTSSSCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCc----HHHHHHHHHHcCHHHHHHHHHCcCHHHHHHHhcccccCHHHHHHHHHHH
Confidence 44467777777665432 4456666777777776655542 22221111334455555554444
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.61 E-value=2.6e+02 Score=25.56 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc
Q 036072 262 ETMVSMLEEMGEKGL--LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA 312 (631)
Q Consensus 262 ~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~ 312 (631)
+++..+|..|...|+ --...|......+-..|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677777777776 245566777777777788888888877777766555
No 328
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=21.39 E-value=1.6e+02 Score=24.53 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=9.9
Q ss_pred HHHHhcCChhHHHHHHHH
Q 036072 253 SILGRARQFETMVSMLEE 270 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~ 270 (631)
...++.|+.+.+..+++.
T Consensus 8 ~~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 8 HQLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 344556666655555544
No 329
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.64 E-value=1.9e+02 Score=25.63 Aligned_cols=185 Identities=6% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-----cCCChhhHHHHHHHHHh
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-----FTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~p~~~~y~~Li~~~~~ 360 (631)
+...+..|+.+.+..+++. ....+......-...+...+..|+.+-+..+++.-..- ...|..-++.|..+...
T Consensus 7 L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 85 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN 85 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVV---------------AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~---------------ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li 425 (631)
.. .++++.+.+.|..++.. .-.+.+...+..|+. ++++.+.+.|..++.
T Consensus 86 ~~-----~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~------- 149 (232)
T 2rfa_A 86 QN-----VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE----EIVRLLIEHGADIRA------- 149 (232)
T ss_dssp TC-----HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH----HHHHHHHHTTCCTTC-------
T ss_pred CC-----HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCC-------
Q ss_pred HHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCChhHHHHHHHH
Q 036072 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--------GLTYNALIKLMKIQKMPDEAVRIYKE 493 (631)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~~t~~~li~~~~~~g~~~~A~~l~~~ 493 (631)
....-.+.+...+..|+.+-+..+++.+.+.|..++ ...-.+.+...+..|+.+-+..+++.
T Consensus 150 ------~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 150 ------QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp ------CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ------CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 330
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.33 E-value=4.2e+02 Score=22.94 Aligned_cols=48 Identities=6% Similarity=0.110 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (631)
.+..++..+.+.|+--|...-...+......|.+. ...+-.++..+|+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCC
Confidence 34444444555554433333334444443333221 1334444445554
No 331
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.24 E-value=1.1e+02 Score=29.49 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=72.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHcCC
Q 036072 252 MSILGRARQFETMVSMLEEMGE-KGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT--INCLLENLGRSK 328 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~--~~~Ll~~~~~~g 328 (631)
+...++.|+.+-+..++++... -+..+..-...+..++ ..+.......+.+.+.+.|..++... -...+...+..|
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~-~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH-HHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHH-HHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Confidence 3344566777655555543210 0111221112222222 22233333445556677776554321 112344556778
Q ss_pred ChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
..+.+..+++.-... ...|..-++.| ...++.|+.+ +.+.+.+.|..+|..+ .+...++.|+.+ +.+
T Consensus 251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL-~~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~ 318 (337)
T 4g8k_A 251 HLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVK 318 (337)
T ss_dssp CHHHHHHHHTSTTCCTTCBCTTSCBHH-HHHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHH
T ss_pred hhHHHHHHHHhcCCcccCcCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHH
Confidence 877766655432111 11222223333 3445667654 4455567787777544 334445666654 455
Q ss_pred HHHHcCCCCcH
Q 036072 408 VMKAKGPSPNV 418 (631)
Q Consensus 408 ~m~~~g~~p~~ 418 (631)
.+.+.|-.||.
T Consensus 319 ~Ll~~GA~~d~ 329 (337)
T 4g8k_A 319 VLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTCCC--
T ss_pred HHHHCcCCCCC
Confidence 56677777664
Done!