BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036073
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 133/234 (56%), Gaps = 13/234 (5%)
Query: 9 NDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSS 68
N T I+++G PG+++E AAL+ E +PC+ F++ F AV A+ A++PIENS
Sbjct: 2 NAXTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58
Query: 69 GGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALAS-SDIVQT 127
GGSIH NYDLLLR + I+ E CLL LPG E SHPQAL + T
Sbjct: 59 GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFAT 118
Query: 128 QLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLV 187
+ E DTA +A+ VA + + A +AS RA E+YGL+IL + + D+ NITRF
Sbjct: 119 HPQIRAEAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178
Query: 188 LARD--------PIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
+A + + P + KTSIVF L G L +ALA FALR I+LTK+
Sbjct: 179 IAHENNPDISHLKVRPDVARQ-KTSIVFALPNEQGSLFRALATFALRGIDLTKI 231
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 19/238 (7%)
Query: 9 NDGTKVRISFKGSPGSFTEDAALKAYP---NCETIPCDEFEEAFKAVELWLAEKAILPIE 65
N + V +F G G+FTE AAL P + IPC A + V A+ A +PIE
Sbjct: 2 NAXSAVTYTFLGPQGTFTE-AALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIE 60
Query: 66 NSSGGSIHHNYDLLLR-HRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDI 124
NS G + D + L I+ E F L+A PG+ +K + +H A A
Sbjct: 61 NSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWA---- 116
Query: 125 VQTQLGVARE--NIDDTASAAQYVASNGL------RDAGVVASARAAEIYGLNILADRIQ 176
Q +L V N D ++ ++ GL +A + A AAE GLN+LA+ I
Sbjct: 117 -QCRLWVDEHLPNADYVPGSSTAASAXGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIG 175
Query: 177 DDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEG-PGVLTKALAVFALREINLTKV 233
D+PD +TRF++++R +P KT++V L E PG L + L FA R +NL+++
Sbjct: 176 DNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRI 233
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 13/224 (5%)
Query: 15 RISFKGSPGSFTEDAALKAYPNCETI--PCDEFEEAFKAVELWLAEKAILPIENSSGGSI 72
++ + G G+F+ A + + E P E KAV ++PIENS G+I
Sbjct: 5 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 64
Query: 73 HHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVA 132
+ D L + + GE++ NF L +K V S A++ + Q
Sbjct: 65 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 124
Query: 133 RENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDP 192
+ +D T + + NG+ +A + E YG + I+D P N+TRFLV+
Sbjct: 125 YDYVDSTIQSLTKI-ENGV---AAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 180
Query: 193 IMPRTDKPFKTSIVFTL---DEGPGVLTKALAVFALREINLTKV 233
+ TS+ F + + PG+L L FAL INL+ +
Sbjct: 181 QFDQN----ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWI 220
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 96/252 (38%), Gaps = 34/252 (13%)
Query: 9 NDGTKVRISFKGSPGSFTEDAALKAYPNC--------ETIPCDEFEEAFKAVEL---WLA 57
N + ++ + G G+FT AA+ A + P D+ + A + W
Sbjct: 2 NAXSARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLXPXDDVPQILDAAQHGDGW-- 59
Query: 58 EKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVAN--FCLLALPGIREEKLKCVLSH 115
I+ EN+ G + N D L+ + +VG + N F G + + +H
Sbjct: 60 --GIVAWENNVEGYVVPNLDALIDAK-DLVGFARVGVNVEFDAYVAQGADPAEARIATAH 116
Query: 116 PQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVV-ASARAAEIYGLNILADR 174
P LA Q + +A + + + A L + A E+Y + +
Sbjct: 117 PHGLA-----QCKRFIAEHRLSTQPATSNAAACRDLIPGEIAFGPAICGELYDITRIGTA 171
Query: 175 IQDDPDNITRFLVL------ARDPIMPRTDKPFKTSIVFT---LDEGPGVLTKALAVFAL 225
IQD T FLVL AR PR + + V T L GPGVL L VF
Sbjct: 172 IQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRD 231
Query: 226 REINLTKVFVAR 237
+N T F++R
Sbjct: 232 AGLNXTS-FISR 242
>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNG-------LRDAGVVASAR 161
L+ VL PQ +D++ T + R N S + + AS+ L+DA A AR
Sbjct: 26 LQLVLHGPQGCTYADLLFTM--IERRNARPPVSFSTFEASHMGTDTAILLKDALAAAHAR 83
Query: 162 ---AAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTK 218
A L A+ +QDDP+ I+R L L P++P + + DE L +
Sbjct: 84 YKPQAMAVALTCTAELLQDDPNGISRALNLPV-PVVPLELPSYSRKENYGADETFRALVR 142
Query: 219 ALAVFALREINLT 231
ALAV R +T
Sbjct: 143 ALAVPMERTPEVT 155
>pdb|3AES|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AES|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNG-------LRDAGVVASAR 161
L+ VL PQ +D++ T + R N S + + AS+ L+DA A AR
Sbjct: 26 LQLVLHGPQGDTYADLLFTX--IERRNARPPVSFSTFEASHXGTDTAILLKDALAAAHAR 83
Query: 162 ---AAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTK 218
A L A+ +QDDP+ I+R L L P++P + + DE L +
Sbjct: 84 YKPQAXAVALTCTAELLQDDPNGISRALNLPV-PVVPLELPSYSRKENYGADETFRALVR 142
Query: 219 ALAVFALREINLT 231
ALAV R +T
Sbjct: 143 ALAVPXERTPEVT 155
>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNG-------LRDAGVVASAR 161
L+ VL PQ +D++ T + R N S + + AS+ L+DA A AR
Sbjct: 26 LQLVLHGPQGATYADLLFTM--IERRNARPPVSFSTFEASHMGTDTAILLKDALAAAHAR 83
Query: 162 ---AAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTK 218
A L A+ +QDDP+ I+R L L P++P + + DE L +
Sbjct: 84 YKPQAMAVALTCTAELLQDDPNGISRALNLPV-PVVPLELPSYSRKENYGADETFRALVR 142
Query: 219 ALAVFALREINLT 231
ALAV R +T
Sbjct: 143 ALAVPMERTPEVT 155
>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNG-------LRDAGVVASAR 161
L+ VL PQ +D++ T + R N S + + AS+ L+DA A AR
Sbjct: 26 LQLVLHGPQGDTYADLLFTM--IERRNARPPVSFSTFEASHMGTDTAILLKDALAAAHAR 83
Query: 162 ---AAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTK 218
A L A+ +QDDP+ I+R L L P++P + + DE L +
Sbjct: 84 YKPQAMAVALTCTAELLQDDPNGISRALNLPV-PVVPLELPSYSRKENYGADETFRALVR 142
Query: 219 ALAVFALREINLT 231
ALAV R +T
Sbjct: 143 ALAVPMERTPEVT 155
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 138 DTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVL 188
+ A A+ + G+R AGV+A AA I L + DR+++D +N RFL L
Sbjct: 221 ERARKARKMLGGGMRQAGVLA---AAGIIALTKMVDRLKEDHEN-ARFLAL 267
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 138 DTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVL 188
+ A A+ + G+R AGV+A AA I L + DR+++D +N RFL L
Sbjct: 229 ERARKARKMLGGGMRQAGVLA---AAGIIALTKMVDRLKEDHEN-ARFLAL 275
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 204 SIVFTLDEGPGVLTKALAVFALREINLTKV 233
S++F+L E G L K L +F +INLT +
Sbjct: 36 SLIFSLKEEVGALAKVLRLFEENDINLTHI 65
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 113 LSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILA 172
L HPQ LA L N TAS A + L G +AR A ++
Sbjct: 442 LPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL 501
Query: 173 DR--IQDDPDNITRFLVLARDP-----IMPRTDKPFKTSIVFTLD---EGPGVLTKALA 221
D + DD + + + LA DP + R D + S VF +D + G L +ALA
Sbjct: 502 DEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA 560
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 113 LSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILA 172
L HPQ LA L N TAS A + L G +AR A ++
Sbjct: 442 LPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL 501
Query: 173 DR--IQDDPDNITRFLVLARDP-----IMPRTDKPFKTSIVFTLD---EGPGVLTKALA 221
D + DD + + + LA DP + R D + S VF +D + G L +ALA
Sbjct: 502 DEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,863,560
Number of Sequences: 62578
Number of extensions: 261412
Number of successful extensions: 899
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 18
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)