Query 036073
Match_columns 241
No_of_seqs 171 out of 1121
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 1.4E-81 4.7E-86 562.2 25.3 224 12-239 5-237 (283)
2 3mwb_A Prephenate dehydratase; 100.0 8.5E-81 2.9E-85 563.5 23.9 229 11-239 4-239 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 8.2E-81 2.8E-85 552.9 22.9 220 12-239 2-226 (267)
4 3luy_A Probable chorismate mut 100.0 3.3E-77 1.1E-81 543.3 19.2 224 11-239 4-245 (329)
5 1phz_A Protein (phenylalanine 99.2 1.6E-11 5.4E-16 114.4 4.6 43 197-239 29-71 (429)
6 1wdn_A GLNBP, glutamine bindin 96.3 0.062 2.1E-06 42.7 11.9 102 9-128 105-206 (226)
7 2ko1_A CTR148A, GTP pyrophosph 96.1 0.0062 2.1E-07 43.0 4.6 37 201-237 4-40 (88)
8 1zpv_A ACT domain protein; str 95.8 0.017 5.9E-07 41.2 5.6 36 202-237 5-40 (91)
9 3h7m_A Sensor protein; histidi 95.6 0.09 3.1E-06 42.1 9.9 99 12-128 116-214 (234)
10 4f3p_A Glutamine-binding perip 95.4 0.12 4E-06 42.4 10.3 85 12-103 129-213 (249)
11 3mpk_A Virulence sensor protei 95.3 0.066 2.3E-06 44.7 8.4 100 12-129 138-238 (267)
12 3k4u_A Binding component of AB 95.3 0.061 2.1E-06 43.9 8.0 98 13-128 115-212 (245)
13 1xt8_A Putative amino-acid tra 95.2 0.14 4.7E-06 43.3 10.2 96 12-128 152-249 (292)
14 3kzg_A Arginine 3RD transport 95.1 0.072 2.5E-06 43.2 8.0 102 12-128 109-214 (237)
15 2fgc_A Acetolactate synthase, 94.9 0.03 1E-06 46.8 4.9 37 202-238 29-65 (193)
16 3del_B Arginine binding protei 94.4 0.24 8.2E-06 40.0 9.4 95 12-128 117-216 (242)
17 3tql_A Arginine-binding protei 93.5 0.19 6.7E-06 39.7 7.0 105 7-129 103-213 (227)
18 2f06_A Conserved hypothetical 93.3 0.087 3E-06 40.9 4.5 32 205-236 75-106 (144)
19 3qax_A Probable ABC transporte 93.3 0.51 1.8E-05 38.4 9.5 94 12-128 138-237 (268)
20 4i62_A Amino acid ABC transpor 92.5 0.22 7.5E-06 40.7 6.1 51 11-63 148-198 (269)
21 2y7i_A STM4351; arginine-bindi 92.3 0.27 9.2E-06 39.1 6.3 50 12-63 111-160 (229)
22 3i6v_A Periplasmic His/Glu/Gln 92.1 1 3.4E-05 36.4 9.6 91 15-128 108-201 (232)
23 2qpq_A Protein BUG27; alpha/be 92.0 0.46 1.6E-05 41.6 7.9 127 12-148 129-284 (301)
24 2yln_A Putative ABC transporte 91.9 0.47 1.6E-05 40.0 7.6 98 11-128 162-261 (283)
25 1u8s_A Glycine cleavage system 91.9 0.43 1.5E-05 38.7 7.1 35 202-236 93-127 (192)
26 2yjp_A Putative ABC transporte 91.6 0.3 1E-05 41.3 6.1 50 12-63 163-212 (291)
27 4dz1_A DALS D-alanine transpor 91.4 0.33 1.1E-05 40.1 6.0 82 12-103 136-225 (259)
28 2pyy_A Ionotropic glutamate re 91.4 0.99 3.4E-05 35.5 8.6 84 11-103 110-193 (228)
29 3hv1_A Polar amino acid ABC up 91.2 0.16 5.5E-06 42.0 3.8 99 12-128 126-232 (268)
30 2vha_A Periplasmic binding tra 91.2 0.55 1.9E-05 39.2 7.2 100 12-128 129-232 (287)
31 3kbr_A Cyclohexadienyl dehydra 91.1 0.33 1.1E-05 39.1 5.6 49 13-63 125-173 (239)
32 2f5x_A BUGD; periplasmic bindi 90.9 0.33 1.1E-05 42.9 5.9 51 13-64 139-193 (312)
33 1ii5_A SLR1257 protein; membra 90.4 0.46 1.6E-05 37.8 5.8 48 12-63 115-162 (233)
34 4h5g_A Amino acid ABC superfam 89.8 0.49 1.7E-05 38.8 5.6 48 14-63 124-171 (243)
35 2v25_A Major cell-binding fact 89.6 0.51 1.8E-05 38.1 5.5 51 11-63 146-200 (259)
36 1lst_A Lysine, arginine, ornit 89.2 0.94 3.2E-05 36.2 6.8 49 13-63 111-161 (239)
37 2pfz_A Putative exported prote 88.4 11 0.00039 32.2 15.1 171 13-191 2-215 (301)
38 2q88_A EHUB, putative ABC tran 88.0 0.99 3.4E-05 36.7 6.2 49 13-63 124-173 (257)
39 4eq9_A ABC transporter substra 87.0 2.3 7.8E-05 33.9 7.9 100 11-128 113-219 (246)
40 2pvu_A ARTJ; basic amino acid 87.0 0.97 3.3E-05 37.4 5.7 50 12-63 146-196 (272)
41 2nyi_A Unknown protein; protei 86.9 0.73 2.5E-05 37.7 4.8 35 202-236 93-127 (195)
42 3un6_A Hypothetical protein sa 86.4 11 0.00039 32.3 12.6 130 11-149 51-201 (341)
43 3ksx_A Nitrate transport prote 86.2 8 0.00027 32.9 11.3 132 10-149 27-177 (324)
44 2hpg_A ABC transporter, peripl 85.6 2.7 9.2E-05 37.0 8.1 165 5-175 2-219 (327)
45 2pfy_A Putative exported prote 85.2 11 0.00037 32.3 11.7 170 13-190 3-215 (301)
46 2vpn_A Periplasmic substrate b 84.6 19 0.00064 31.0 13.4 172 13-190 2-217 (316)
47 2pyy_A Ionotropic glutamate re 83.9 3.4 0.00012 32.2 7.4 113 36-164 41-163 (228)
48 1ii5_A SLR1257 protein; membra 82.9 11 0.00038 29.3 10.1 117 36-165 45-168 (233)
49 2re1_A Aspartokinase, alpha an 81.5 1.2 4.2E-05 35.4 3.8 33 202-234 25-58 (167)
50 2ozz_A Hypothetical protein YH 80.7 8.1 0.00028 32.7 8.8 113 33-158 40-161 (231)
51 4go7_X Aspartokinase; transfer 79.3 1.5 5.2E-05 36.4 3.7 33 202-234 35-68 (200)
52 2zzv_A ABC transporter, solute 78.7 19 0.00066 31.6 11.1 132 12-149 34-210 (361)
53 2iee_A ORF2, probable ABC tran 78.2 2.8 9.6E-05 34.6 5.1 97 12-128 131-230 (271)
54 3i6v_A Periplasmic His/Glu/Gln 77.2 5.6 0.00019 31.8 6.5 111 36-164 45-157 (232)
55 4ab5_A Transcriptional regulat 75.2 25 0.00086 26.8 12.1 138 10-165 6-163 (222)
56 3del_B Arginine binding protei 74.5 10 0.00035 30.0 7.4 114 36-166 51-172 (242)
57 2dvz_A BUGE, putative exported 74.5 4.9 0.00017 35.3 5.9 52 12-64 142-197 (314)
58 3mpk_A Virulence sensor protei 74.4 28 0.00096 28.2 10.3 112 37-164 73-192 (267)
59 3tql_A Arginine-binding protei 73.7 17 0.00058 28.0 8.5 113 37-165 43-164 (227)
60 3qsl_A Putative exported prote 73.1 3.4 0.00012 35.0 4.4 51 12-63 137-194 (346)
61 3kzg_A Arginine 3RD transport 72.9 5.1 0.00018 31.9 5.2 114 37-165 45-164 (237)
62 2x26_A Periplasmic aliphatic s 71.9 35 0.0012 28.3 10.6 139 12-160 3-160 (308)
63 1wdn_A GLNBP, glutamine bindin 71.9 20 0.00069 27.6 8.5 112 37-164 43-162 (226)
64 1zbm_A Hypothetical protein AF 71.8 7 0.00024 32.5 6.0 53 10-64 100-152 (280)
65 3n5l_A Binding protein compone 70.9 23 0.00077 30.4 9.3 83 13-104 116-213 (310)
66 1ixc_A CBNR, LYSR-type regulat 70.5 41 0.0014 27.2 14.0 143 11-163 90-247 (294)
67 4ddd_A Immunogenic protein; ss 70.0 7.2 0.00025 34.0 5.9 50 13-63 146-202 (327)
68 2xwv_A Sialic acid-binding per 69.4 54 0.0019 28.2 13.7 171 13-190 4-220 (312)
69 3ho7_A OXYR; beta-alpha-barrel 67.2 23 0.0008 27.3 7.9 136 11-164 10-167 (232)
70 2dt9_A Aspartokinase; protein- 67.1 2.6 9E-05 33.3 2.2 32 202-234 18-49 (167)
71 1ygy_A PGDH, D-3-phosphoglycer 67.0 5.8 0.0002 37.4 4.9 33 202-234 454-486 (529)
72 2dt9_A Aspartokinase; protein- 66.6 4.1 0.00014 32.2 3.2 35 202-236 97-132 (167)
73 2y7p_A LYSR-type regulatory pr 65.9 30 0.001 27.1 8.4 121 33-164 33-162 (218)
74 3uif_A Sulfonate ABC transport 65.4 6.3 0.00022 34.1 4.5 50 11-63 117-173 (348)
75 3qsl_A Putative exported prote 65.3 59 0.002 27.1 10.9 130 12-149 33-186 (346)
76 3p7i_A PHND, subunit of alkylp 65.1 17 0.00057 31.6 7.2 83 13-104 126-222 (321)
77 3jv9_A OXYR, transcriptional r 64.0 44 0.0015 25.2 14.0 145 11-165 3-165 (219)
78 4gvo_A LMO2349 protein; struct 63.8 19 0.00064 28.9 6.9 95 12-128 117-219 (243)
79 3qax_A Probable ABC transporte 63.2 33 0.0011 27.3 8.3 113 37-166 72-193 (268)
80 3ix1_A N-formyl-4-amino-5-amin 63.1 31 0.0011 28.7 8.4 88 37-131 36-130 (302)
81 4f3p_A Glutamine-binding perip 62.9 49 0.0017 26.2 9.3 114 36-165 63-184 (249)
82 4i62_A Amino acid ABC transpor 62.1 29 0.001 27.6 7.8 114 36-165 82-204 (269)
83 1xs5_A 29 kDa protein, membran 61.8 6.4 0.00022 33.2 3.7 110 13-131 4-125 (241)
84 2dtj_A Aspartokinase; protein- 61.5 6.8 0.00023 31.3 3.7 36 202-237 97-133 (178)
85 3onm_A Transcriptional regulat 61.4 56 0.0019 25.5 14.7 134 11-164 26-172 (238)
86 2pvu_A ARTJ; basic amino acid 61.2 46 0.0016 26.8 9.0 113 36-164 81-201 (272)
87 1us5_A Putative GLUR0 ligand b 60.5 56 0.0019 27.1 9.6 138 11-149 18-179 (314)
88 3mtj_A Homoserine dehydrogenas 60.0 8.3 0.00028 35.8 4.4 36 202-237 357-394 (444)
89 3hn0_A Nitrate transport prote 59.8 12 0.00042 31.6 5.2 51 12-63 95-150 (283)
90 3uif_A Sulfonate ABC transport 59.7 82 0.0028 26.8 12.0 115 37-161 46-175 (348)
91 2hxr_A HTH-type transcriptiona 59.5 59 0.002 25.2 14.9 122 33-164 55-185 (238)
92 1uth_A LYSR-type regulatory pr 59.1 28 0.00095 29.1 7.4 122 33-165 130-260 (315)
93 2re1_A Aspartokinase, alpha an 58.4 6.7 0.00023 30.9 3.1 27 209-235 113-139 (167)
94 3ksx_A Nitrate transport prote 58.3 13 0.00044 31.6 5.1 50 11-63 129-185 (324)
95 3o1l_A Formyltetrahydrofolate 57.1 15 0.0005 32.4 5.3 36 201-236 21-56 (302)
96 3mah_A Aspartokinase; aspartat 56.5 5 0.00017 31.4 2.0 29 209-237 28-56 (157)
97 3fzv_A Probable transcriptiona 56.0 46 0.0016 27.1 8.1 141 11-161 94-247 (306)
98 2x7q_A Ca3427, possible thiami 55.9 77 0.0026 26.7 9.8 132 11-149 14-165 (321)
99 4ef1_A Pheromone COB1/lipoprot 55.5 95 0.0033 26.3 10.3 147 12-172 4-189 (246)
100 2rc8_A Glutamate [NMDA] recept 54.9 7.5 0.00026 32.6 3.0 84 13-103 170-259 (294)
101 3kbr_A Cyclohexadienyl dehydra 54.5 8.4 0.00029 30.5 3.1 113 37-165 56-179 (239)
102 2yln_A Putative ABC transporte 54.4 55 0.0019 26.9 8.4 113 37-164 98-215 (283)
103 2h9b_A HTH-type transcriptiona 53.6 93 0.0032 25.6 14.5 142 13-164 91-249 (312)
104 2czl_A Hypothetical protein TT 52.7 26 0.0009 28.7 6.0 52 10-63 93-144 (272)
105 3ab4_A Aspartokinase; aspartat 52.5 13 0.00044 33.9 4.4 95 133-233 192-296 (421)
106 2x26_A Periplasmic aliphatic s 51.9 15 0.00051 30.7 4.4 49 12-63 104-159 (308)
107 3k4u_A Binding component of AB 51.4 22 0.00074 28.2 5.2 112 37-164 46-168 (245)
108 3h7m_A Sensor protein; histidi 50.8 81 0.0028 24.1 11.1 112 36-164 51-170 (234)
109 4ddd_A Immunogenic protein; ss 50.7 56 0.0019 28.1 8.1 136 11-149 31-194 (327)
110 1p99_A Hypothetical protein PG 50.0 10 0.00035 32.9 3.1 88 12-109 39-134 (295)
111 3tmg_A Glycine betaine, L-prol 49.7 1.2E+02 0.004 25.6 13.7 132 37-173 46-198 (280)
112 3s1t_A Aspartokinase; ACT doma 49.4 18 0.00061 29.0 4.3 34 202-235 98-132 (181)
113 3hv1_A Polar amino acid ABC up 48.5 5.7 0.00019 32.3 1.1 113 37-165 62-188 (268)
114 3k5p_A D-3-phosphoglycerate de 46.6 37 0.0013 31.1 6.4 35 202-236 343-377 (416)
115 3oxn_A Putative transcriptiona 45.3 1E+02 0.0036 23.8 10.3 149 11-171 18-183 (241)
116 3lte_A Response regulator; str 45.2 28 0.00097 24.5 4.5 78 111-191 11-89 (132)
117 2ozz_A Hypothetical protein YH 45.1 26 0.00088 29.5 4.8 47 14-62 113-161 (231)
118 4eq9_A ABC transporter substra 44.1 54 0.0019 25.5 6.5 114 37-164 49-174 (246)
119 2esn_A Probable transcriptiona 43.4 1.3E+02 0.0045 24.4 11.4 121 34-165 127-259 (310)
120 1tdj_A Biosynthetic threonine 43.2 15 0.0005 34.8 3.2 32 204-236 435-466 (514)
121 2yjp_A Putative ABC transporte 42.2 57 0.0019 26.8 6.6 112 37-164 99-217 (291)
122 2ql3_A Probable transcriptiona 42.0 1.1E+02 0.0037 23.0 11.8 139 12-160 5-156 (209)
123 3l76_A Aspartokinase; alloster 42.0 19 0.00064 34.6 3.8 34 201-234 443-477 (600)
124 1r9l_A Glycine betaine-binding 41.4 1.6E+02 0.0056 24.9 10.8 159 11-174 7-209 (309)
125 3kht_A Response regulator; PSI 40.8 61 0.0021 23.2 5.9 108 111-223 10-125 (144)
126 4go7_X Aspartokinase; transfer 40.7 25 0.00086 28.9 4.0 35 202-236 117-152 (200)
127 2h98_A HTH-type transcriptiona 40.5 1.5E+02 0.0053 24.4 14.3 142 13-164 91-249 (313)
128 3i42_A Response regulator rece 40.5 24 0.00081 24.8 3.4 111 112-225 9-121 (127)
129 4dz1_A DALS D-alanine transpor 40.3 1.4E+02 0.0047 23.7 11.8 114 37-164 70-196 (259)
130 3gl9_A Response regulator; bet 39.7 32 0.0011 24.2 4.0 78 112-192 8-86 (122)
131 3eod_A Protein HNR; response r 39.1 50 0.0017 23.1 5.0 111 109-225 10-125 (130)
132 3tvi_A Aspartokinase; structur 38.4 46 0.0016 30.7 5.7 76 162-237 253-336 (446)
133 3grc_A Sensor protein, kinase; 37.8 25 0.00086 25.2 3.2 112 111-225 11-126 (140)
134 1sc6_A PGDH, D-3-phosphoglycer 37.5 37 0.0013 30.8 4.9 34 202-235 331-364 (404)
135 3u65_B TP33 protein; tetratric 36.9 24 0.00081 30.9 3.4 176 8-190 6-233 (328)
136 4esw_A Pyrimidine biosynthesis 36.8 1.1E+02 0.0036 26.1 7.7 87 37-131 40-134 (342)
137 1sw5_A Osmoprotection protein 36.4 43 0.0015 28.0 4.9 137 37-174 36-207 (275)
138 1atg_A MODA, periplasmic molyb 36.4 46 0.0016 25.6 4.8 50 15-64 106-165 (231)
139 3cnb_A DNA-binding response re 36.0 57 0.0019 23.1 5.0 111 111-227 13-131 (143)
140 3gzg_A Molybdate-binding perip 35.7 53 0.0018 27.3 5.3 52 14-65 133-192 (253)
141 3fxq_A LYSR type regulator of 35.5 1.8E+02 0.006 23.6 12.8 122 33-164 117-248 (305)
142 1xt8_A Putative amino-acid tra 34.9 1.8E+02 0.0061 23.5 8.6 112 37-164 88-206 (292)
143 3r26_A Molybdate-binding perip 34.8 44 0.0015 27.1 4.6 51 14-65 117-176 (237)
144 3fxb_A Trap dicarboxylate tran 34.7 39 0.0013 29.3 4.4 161 9-177 12-217 (326)
145 2hzl_A Trap-T family sorbitol/ 34.3 26 0.00089 30.8 3.2 121 12-136 32-196 (365)
146 2a5s_A N-methyl-D-aspartate re 34.0 21 0.00071 29.6 2.5 48 14-63 162-213 (284)
147 2j48_A Two-component sensor ki 33.5 40 0.0014 22.7 3.6 78 112-192 7-85 (119)
148 2fyi_A HTH-type transcriptiona 33.3 1.6E+02 0.0055 22.5 12.6 121 33-163 39-169 (228)
149 2cdq_A Aspartokinase; aspartat 33.0 64 0.0022 30.2 5.9 70 164-235 300-377 (510)
150 2vha_A Periplasmic binding tra 32.4 1.9E+02 0.0066 23.1 9.9 114 37-164 65-187 (287)
151 4ib2_A Putative lipoprotein; p 32.4 86 0.0029 26.7 6.1 110 12-130 11-132 (252)
152 3t6k_A Response regulator rece 32.3 37 0.0013 24.4 3.4 110 112-227 10-125 (136)
153 3hdv_A Response regulator; PSI 31.5 65 0.0022 22.7 4.6 113 109-226 10-127 (136)
154 3ab4_A Aspartokinase; aspartat 31.5 32 0.0011 31.2 3.4 29 208-236 353-381 (421)
155 1i6a_A OXYR, hydrogen peroxide 31.0 81 0.0028 24.1 5.4 53 11-63 4-61 (219)
156 3c1m_A Probable aspartokinase; 31.0 63 0.0022 29.8 5.4 70 164-234 277-353 (473)
157 3cg4_A Response regulator rece 30.7 1.4E+02 0.0048 20.9 8.7 111 110-223 11-124 (142)
158 3l6g_A Betaine ABC transporter 29.4 2.4E+02 0.0082 23.2 13.4 132 37-173 32-181 (256)
159 3aon_B V-type sodium ATPase su 29.0 91 0.0031 23.2 5.1 64 14-84 3-70 (115)
160 1us5_A Putative GLUR0 ligand b 28.9 49 0.0017 27.4 4.0 49 14-63 132-187 (314)
161 3un6_A Hypothetical protein sa 28.7 66 0.0022 27.3 4.9 50 12-63 153-209 (341)
162 3p7i_A PHND, subunit of alkylp 28.6 70 0.0024 27.5 5.0 56 7-62 9-73 (321)
163 3nhm_A Response regulator; pro 28.6 1.3E+02 0.0046 20.7 5.9 53 12-64 3-55 (133)
164 3h1g_A Chemotaxis protein CHEY 27.7 86 0.003 21.9 4.7 109 111-224 10-125 (129)
165 2nxo_A Hypothetical protein SC 27.6 1.1E+02 0.0039 25.4 6.1 53 10-63 5-60 (291)
166 3c3m_A Response regulator rece 27.4 53 0.0018 23.4 3.5 110 112-225 9-122 (138)
167 3n5l_A Binding protein compone 27.3 86 0.003 26.6 5.3 53 11-63 3-64 (310)
168 1tdj_A Biosynthetic threonine 26.9 27 0.00094 32.9 2.1 33 202-236 338-370 (514)
169 3hn0_A Nitrate transport prote 25.9 51 0.0017 27.6 3.6 137 11-161 4-153 (283)
170 1pb7_A N-methyl-D-aspartate re 25.5 34 0.0012 28.5 2.4 74 21-103 176-257 (292)
171 2v25_A Major cell-binding fact 24.9 2.4E+02 0.0081 21.7 8.8 114 37-164 83-205 (259)
172 2g29_A Nitrate transport prote 24.8 85 0.0029 27.9 5.0 50 12-63 154-211 (417)
173 1z7m_E ATP phosphoribosyltrans 24.5 2.5E+02 0.0087 23.0 7.5 140 14-172 2-172 (208)
174 1ve4_A ATP phosphoribosyltrans 24.1 2.6E+02 0.0088 23.0 7.4 140 12-172 4-170 (206)
175 2qvg_A Two component response 24.0 1.3E+02 0.0045 21.1 5.2 112 109-225 10-134 (143)
176 1k66_A Phytochrome response re 23.9 1.6E+02 0.0053 20.7 5.6 115 109-228 9-140 (149)
177 3gxa_A Outer membrane lipoprot 23.9 23 0.00078 30.8 0.9 109 11-130 22-145 (275)
178 3gt7_A Sensor protein; structu 23.8 63 0.0022 23.6 3.4 110 109-224 10-125 (154)
179 1iej_A Ovotransferrin; iron, m 23.6 3.4E+02 0.012 23.7 8.6 117 109-228 7-137 (332)
180 1h45_A Lactoferrin; metal tran 23.4 79 0.0027 27.9 4.4 29 35-63 33-61 (334)
181 1al3_A Cys regulon transcripti 23.4 3.1E+02 0.01 22.5 10.1 121 33-163 118-248 (324)
182 2cdn_A Adenylate kinase; phosp 23.3 43 0.0015 26.2 2.4 25 1-25 8-32 (201)
183 2zay_A Response regulator rece 23.3 48 0.0016 23.8 2.5 106 112-223 14-125 (147)
184 3sr0_A Adenylate kinase; phosp 23.2 33 0.0011 27.9 1.7 20 14-33 1-24 (206)
185 3mst_A Putative nitrate transp 23.1 1.3E+02 0.0044 25.6 5.4 50 13-66 89-140 (244)
186 2czl_A Hypothetical protein TT 22.9 1E+02 0.0035 24.9 4.9 51 13-64 3-58 (272)
187 1mb3_A Cell division response 22.6 57 0.0019 22.5 2.8 107 112-224 7-119 (124)
188 2vd2_A ATP phosphoribosyltrans 22.6 2.1E+02 0.0073 23.6 6.6 144 10-172 2-174 (214)
189 3tqw_A Methionine-binding prot 22.6 1.6E+02 0.0054 24.9 5.9 109 12-131 3-126 (240)
190 3c1m_A Probable aspartokinase; 22.4 39 0.0013 31.2 2.3 26 209-234 414-439 (473)
191 3n53_A Response regulator rece 21.9 2.1E+02 0.0071 20.0 7.3 111 112-226 9-122 (140)
192 2gkg_A Response regulator homo 21.8 90 0.0031 21.3 3.7 106 112-224 11-123 (127)
193 1ryo_A Serotransferrin; iron t 21.5 77 0.0026 27.9 3.9 28 36-63 36-63 (327)
194 3k6v_A Solute-binding protein 21.4 64 0.0022 28.6 3.4 30 38-67 222-251 (354)
195 2b4a_A BH3024; flavodoxin-like 20.9 2.2E+02 0.0074 19.8 7.5 109 109-223 18-128 (138)
196 1p6q_A CHEY2; chemotaxis, sign 20.9 1.5E+02 0.005 20.4 4.8 81 109-192 9-91 (129)
197 2pfy_A Putative exported prote 20.3 57 0.0019 27.6 2.7 64 8-77 134-197 (301)
198 2x7q_A Ca3427, possible thiami 20.1 1.6E+02 0.0054 24.6 5.6 46 14-60 119-174 (321)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=1.4e-81 Score=562.17 Aligned_cols=224 Identities=43% Similarity=0.622 Sum_probs=213.3
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ 91 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~ 91 (241)
.++|||||||+|||||+||+++| +++||.||+|||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.
T Consensus 5 ~~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~ 81 (283)
T 2qmx_A 5 TNWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETF 81 (283)
T ss_dssp -CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEE
T ss_pred CCcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEE
Confidence 35799999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhc-CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCce
Q 036073 92 FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQL-GVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNI 170 (241)
Q Consensus 92 l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~i 170 (241)
+||+|||++++|.++++|++||||||||+||++||+++ +++.++++|||+||+++++.++++.|||||+.||++|||+|
T Consensus 82 l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~i 161 (283)
T 2qmx_A 82 VKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDI 161 (283)
T ss_dssp EECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEE
T ss_pred EeeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCce
Confidence 99999999999999999999999999999999999997 89999999999999999998778899999999999999999
Q ss_pred eecccCCCCCCceeEEEEeeCCCC--------CCCCCCceEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeeccC
Q 036073 171 LADRIQDDPDNITRFLVLARDPIM--------PRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVY 239 (241)
Q Consensus 171 l~~~I~d~~~N~TRF~vl~~~~~~--------~~~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP~~ 239 (241)
|+++|||.++|+|||+||+|++.. +. .+.+||||+|.++|+||+|+++|++|+++|||||||||||++
T Consensus 162 l~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~ 237 (283)
T 2qmx_A 162 LKENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSR 237 (283)
T ss_dssp EESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECS
T ss_pred ecccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcC
Confidence 999999999999999999998654 22 225799999999999999999999999999999999999986
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=8.5e-81 Score=563.49 Aligned_cols=229 Identities=28% Similarity=0.418 Sum_probs=214.3
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCC--CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccC-CeEEE
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYP--NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRH-RLHIV 87 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~--~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~-~l~I~ 87 (241)
+.++|||||||+|||||+||+++|+ +.+++||.||++||++|++|++||||||||||++|+|.+|||+|.++ +|+|+
T Consensus 4 m~~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Iv 83 (313)
T 3mwb_A 4 MSAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRII 83 (313)
T ss_dssp ---CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEE
T ss_pred CcccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEE
Confidence 4568999999999999999999984 47899999999999999999999999999999999999999999985 79999
Q ss_pred EEEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 88 GEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 88 ~E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
||+.+||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||+++++.++++.|||||+.||++
T Consensus 84 gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 163 (313)
T 3mwb_A 84 REALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAE 163 (313)
T ss_dssp EEEEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHH
T ss_pred EEEEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHH
Confidence 999999999999999999999999999999999999999985 789999999999999999876668899999999999
Q ss_pred cC-CceeecccCCCCCCceeEEEEeeCCCCCCCCCCceEEEEEecC-CCchHHHHHHHHHHHCCceeeeeeeeccC
Q 036073 166 YG-LNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLD-EGPGVLTKALAVFALREINLTKVFVARVY 239 (241)
Q Consensus 166 yg-L~il~~~I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~~~~~-~~pGaL~~~L~~fa~~~iNLt~IeSRP~~ 239 (241)
|| |+||+++|||.++|+|||+||+|+...+..++.+||||+|.++ |+||+|+++|++|+++|||||||||||++
T Consensus 164 Yg~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~ 239 (313)
T 3mwb_A 164 QPGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTG 239 (313)
T ss_dssp CTTCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECS
T ss_pred cCChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecC
Confidence 99 9999999999999999999999987544445678999999997 99999999999999999999999999986
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=8.2e-81 Score=552.88 Aligned_cols=220 Identities=26% Similarity=0.360 Sum_probs=209.8
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCc--eeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCE--TIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGE 89 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~--~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E 89 (241)
.++|||||||+|||||+||+++|++.+ ++||.||+|||++|++|++||||||||||++|+|.+|+|+|.+++++|+||
T Consensus 2 ~~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE 81 (267)
T 2qmw_A 2 NAMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGE 81 (267)
T ss_dssp --CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEE
T ss_pred CccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEE
Confidence 458999999999999999999998754 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCc
Q 036073 90 VQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLN 169 (241)
Q Consensus 90 ~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~ 169 (241)
+.+||+|||++++|.++++|++||||||||+||++||++++++.++++|||+||+++++ + .|||||+.||++|||+
T Consensus 82 ~~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~ 157 (267)
T 2qmw_A 82 IRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFT 157 (267)
T ss_dssp EEEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCC
T ss_pred EEEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCc
Confidence 99999999999999999999999999999999999999988999999999999999986 3 8999999999999999
Q ss_pred eeecccCCCCCCceeEEEEeeCCCCCCCCCCceEEEEEec---CCCchHHHHHHHHHHHCCceeeeeeeeccC
Q 036073 170 ILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTL---DEGPGVLTKALAVFALREINLTKVFVARVY 239 (241)
Q Consensus 170 il~~~I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~~~~---~~~pGaL~~~L~~fa~~~iNLt~IeSRP~~ 239 (241)
||+++|||+++|+|||+||+|++ .+ + .+||||+|.+ +|+||+|+++|++|+++|||||||||||++
T Consensus 158 il~~~I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~ 226 (267)
T 2qmw_A 158 PIDTHIEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLK 226 (267)
T ss_dssp EEEECCCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECS
T ss_pred EeeccccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecC
Confidence 99999999999999999999987 33 3 6799999999 899999999999999999999999999986
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=3.3e-77 Score=543.29 Aligned_cols=224 Identities=23% Similarity=0.313 Sum_probs=205.7
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhC--------CCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccC
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAY--------PNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRH 82 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~--------~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~ 82 (241)
+.++|||||||+|||||+||+++| ++.+++||.||++||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 4 ~~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~ 82 (329)
T 3luy_A 4 MSARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDA 82 (329)
T ss_dssp CCCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTC
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhcc
Confidence 567899999999999999999975 3578999999999999999999 9999999999999999999999874
Q ss_pred -CeEEEEEEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHh
Q 036073 83 -RLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASAR 161 (241)
Q Consensus 83 -~l~I~~E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~ 161 (241)
+|+|+||+.+||+|||++++|.++++|++||||||||+||++||++++++.+++.|||+||+.++ ++.|||||+.
T Consensus 83 ~~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~----~~~AAIas~~ 158 (329)
T 3luy_A 83 KDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAI 158 (329)
T ss_dssp SSCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCC----TTEEEEECTT
T ss_pred CCcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhC----CCCceeCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999875 3589999999
Q ss_pred hHHhcCCceeecccCCCCCCceeEEEEeeCCCC------CC-CCCCceEEEEEecC--CCchHHHHHHHHHHHCCceeee
Q 036073 162 AAEIYGLNILADRIQDDPDNITRFLVLARDPIM------PR-TDKPFKTSIVFTLD--EGPGVLTKALAVFALREINLTK 232 (241)
Q Consensus 162 aa~~ygL~il~~~I~d~~~N~TRF~vl~~~~~~------~~-~~~~~ktsi~~~~~--~~pGaL~~~L~~fa~~~iNLt~ 232 (241)
||++|||+||+++|||+++|+|||+||+|+... +. ..+.+|||++|.++ |+||+|+++|++|+++||||||
T Consensus 159 AAelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtk 238 (329)
T 3luy_A 159 CGELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTS 238 (329)
T ss_dssp HHHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred HHHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEE
Confidence 999999999999999999999999999997542 11 11346888887765 6899999999999999999999
Q ss_pred eeeeccC
Q 036073 233 VFVARVY 239 (241)
Q Consensus 233 IeSRP~~ 239 (241)
|||||++
T Consensus 239 IESRP~~ 245 (329)
T 3luy_A 239 FISRPIK 245 (329)
T ss_dssp EEEEEET
T ss_pred EEeeECC
Confidence 9999986
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.15 E-value=1.6e-11 Score=114.36 Aligned_cols=43 Identities=30% Similarity=0.435 Sum_probs=40.2
Q ss_pred CCCCceEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeeccC
Q 036073 197 TDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVY 239 (241)
Q Consensus 197 ~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP~~ 239 (241)
.++.+||||+|+++|+||+|+++|++|+.+|||||||||||++
T Consensus 29 ~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk 71 (429)
T 1phz_A 29 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR 71 (429)
T ss_dssp CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECS
T ss_pred CCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecC
Confidence 3456899999999999999999999999999999999999986
No 6
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=96.29 E-value=0.062 Score=42.69 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=68.8
Q ss_pred CCCCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEE
Q 036073 9 NDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVG 88 (241)
Q Consensus 9 ~~~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~ 88 (241)
.+-...+|++. .|+..+....+.+++.+++.+.+..+++++|.+|++|+.+.+-.. ... .+......++.+.+
T Consensus 105 ~dL~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~~~----~~~~~~~~~l~~~~ 177 (226)
T 1wdn_A 105 KDLDGKVVAVK--SGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPN-ILY----FIKTAGNGQFKAVG 177 (226)
T ss_dssp TTTTTCEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHH----HHHTTTTTTEEEEE
T ss_pred HHhCCCEEEEE--cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH-HHH----HHHhCCCCceEEec
Confidence 33445789984 678777777777778889999999999999999999998876221 111 11111113577777
Q ss_pred EEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 89 EVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 89 E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
....+..++++.+++ +|+-..+..++|.+
T Consensus 178 ~~~~~~~~~~~~~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 178 DSLEAQQYGIAFPKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCcccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 666666677777654 45666666677665
No 7
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.14 E-value=0.0062 Score=43.05 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeec
Q 036073 201 FKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVAR 237 (241)
Q Consensus 201 ~ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP 237 (241)
..+.|.+..+|+||.|.++.+.|++.|+|+..+...+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~ 40 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNA 40 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEE
Confidence 4567778889999999999999999999999988764
No 8
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.77 E-value=0.017 Score=41.19 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeec
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVAR 237 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP 237 (241)
+..|.+..+|+||.|.++.+.|+++|+|+..+....
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~ 40 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV 40 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEE
Confidence 456777789999999999999999999999987653
No 9
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=95.57 E-value=0.09 Score=42.06 Aligned_cols=99 Identities=8% Similarity=-0.026 Sum_probs=67.6
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ 91 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~ 91 (241)
...+||+. .|+..+.-..+..++.+++.+.+.++++++|.+|++|+.+..-. .+ ...+......++.+.+...
T Consensus 116 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---~~--~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3h7m_A 116 RGRKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMV---PG--MYIIRENRLTNLVPVARSI 188 (234)
T ss_dssp TTSCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHH---HH--HHHHHHTTCTTEEEEEEEE
T ss_pred CCCEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccH---HH--HHHHHhcCCCceEEecccc
Confidence 45689886 57777766666666778999999999999999999999987522 11 1111111113577777777
Q ss_pred EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 92 FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 92 l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
.+..++++.+++ +|+-..+-.++|.+
T Consensus 189 ~~~~~~~~~~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 189 AAQRYGYAVRQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp EEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 677777777654 46666666666665
No 10
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=95.43 E-value=0.12 Score=42.35 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=61.9
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ 91 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~ 91 (241)
...+||+. .|+..+.-....+++.+++.+++.++++++|.+|++|+.+..-. .....+......++.+.++..
T Consensus 129 ~g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-----~~~~~~~~~~~~~l~~~~~~~ 201 (249)
T 4f3p_A 129 NGKVIAAK--TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTP-----NVLFFVNNEGKGRVKVAGAPV 201 (249)
T ss_dssp TTSEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHH-----HHHHHHHTTTTTTEEEEEEEE
T ss_pred CCCEEEEe--CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcH-----HHHHHHHhCCCCceEEecCCC
Confidence 45689875 68877777777788889999999999999999999999997632 111111111124588888887
Q ss_pred EeeeeeeecCCC
Q 036073 92 FVANFCLLALPG 103 (241)
Q Consensus 92 l~I~~~L~~~~g 103 (241)
.+..++++.+++
T Consensus 202 ~~~~~~~~~~k~ 213 (249)
T 4f3p_A 202 SGDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEEETT
T ss_pred CCccEEEEEcCC
Confidence 777888887765
No 11
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=95.28 E-value=0.066 Score=44.74 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ 91 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~ 91 (241)
...+||+.. |+..+....+.+++.+++.+++.++++++|.+|++|+++..-. .....+. .....++.+.+...
T Consensus 138 ~g~~i~v~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~~~~~~~----~~~~~~l~~~~~~~ 210 (267)
T 3mpk_A 138 DGRTVALVR--NSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-SASYYVN----RYFAGKLRIASALD 210 (267)
T ss_dssp TTCEEEEET--TCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-HHHHHHH----HHCTTTEEEEEECS
T ss_pred CCCEEEEeC--CchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-HHHHHHH----hcCCCceEEEeccC
Confidence 457899874 6666766677788899999999999999999999999998621 1111111 11134588877654
Q ss_pred E-eeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhc
Q 036073 92 F-VANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQL 129 (241)
Q Consensus 92 l-~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~ 129 (241)
. +..++++.+++ +|+-..+..++|.+.
T Consensus 211 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 211 LPPAEIALATTRG-----------QTELMSILNKALYSI 238 (267)
T ss_dssp SCCEEEEEEEETT-----------CHHHHHHHHHHHHTS
T ss_pred CCceeEEEEEcCC-----------CHHHHHHHHHHHHhC
Confidence 3 55666666654 667777777777653
No 12
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=95.26 E-value=0.061 Score=43.92 Aligned_cols=98 Identities=17% Similarity=0.036 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEE
Q 036073 13 KVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQF 92 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l 92 (241)
..+||+. .|+..+......+++.+++.+++.++++++|.+|++|+.+..-. .. ...+.......+.+.++...
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-~~----~~~~~~~~~~~~~~~~~~~~ 187 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLP-FN----VAFMAQKGQGYLVHLDTSLT 187 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHH-HH----HHHHHHTTTTTEEEECCCCS
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHH-HH----HHHHhcCCccceeecCCCcc
Confidence 5689886 78888888888888899999999999999999999999887521 11 11111111234555555444
Q ss_pred eeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 93 VANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 93 ~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
+...+++.+++ +|+-..+..++|.+
T Consensus 188 ~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 212 (245)
T 3k4u_A 188 YEPLGWAIKKG-----------DPDFLNWLNHFLAQ 212 (245)
T ss_dssp CEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred cccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 55666666654 56666666777765
No 13
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=95.19 E-value=0.14 Score=43.26 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=66.3
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccccccc-CCeEEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLR-HRLHIVGEV 90 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~-~~l~I~~E~ 90 (241)
...||++. .|+..+......+++.+++.+.+.++++++|.+|++|+++..-. .... .+.+ .++.+.+..
T Consensus 152 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~-~~~~-------~~~~~~~l~~~~~~ 221 (292)
T 1xt8_A 152 KDKTLLLN--KGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNT-LLFA-------WVKDHPDFKMGIKE 221 (292)
T ss_dssp TTSEEEEE--TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHH-------HHHHCTTEEEEEEE
T ss_pred CCCEEEEe--CCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHH-HHHH-------HHHhCCCeEEcccc
Confidence 35689884 78888887777788888999999999999999999999987521 1111 1111 237777665
Q ss_pred EEeeee-eeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 91 QFVANF-CLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 91 ~l~I~~-~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
.-+..+ +++.+++ +|+-..+..++|.+
T Consensus 222 ~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 222 LGNKDVIAPAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp EEEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred cccCceeEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 555555 6666543 46666666777765
No 14
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=95.14 E-value=0.072 Score=43.24 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=66.5
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc---cCCeEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL---RHRLHIVG 88 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---~~~l~I~~ 88 (241)
...+||+. .|+..+....+.+++.+++.+.+.++++++|.+|++|+.+..-. .....+.. ...+. ..++.+.+
T Consensus 109 ~g~~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~ 184 (237)
T 3kzg_A 109 HGKKIGVR--KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE-AAKYWMAS-EPYAYKLIGKKYKLIG 184 (237)
T ss_dssp TTCEEEEE--TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHHHHTT-SSTTHHHHCCSEEEEE
T ss_pred CCCEEEEe--cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH-HHHHHHHh-CCccccccCCceEEec
Confidence 34688885 56665555566777889999999999999999999999887522 11111111 00000 22677877
Q ss_pred EEE-EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 89 EVQ-FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 89 E~~-l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
... .+..++++.+++ +|+-..+-.++|.+
T Consensus 185 ~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 185 KKISIGEGYSIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp EEEECTTCBCCEECGG-----------GHHHHHHHHHHHHH
T ss_pred CccccCccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 754 455566665543 56777777777766
No 15
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=94.87 E-value=0.03 Score=46.82 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=32.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeecc
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARV 238 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP~ 238 (241)
|-.|.+.+.|+||.|.++.+.|++||+|+.++-.-|.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~t 65 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGES 65 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEEC
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeecc
Confidence 4567777899999999999999999999998876553
No 16
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=94.41 E-value=0.24 Score=40.00 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=63.7
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccccccc-CCeEEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLR-HRLHIVGEV 90 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~-~~l~I~~E~ 90 (241)
...+||+. .|+..+..... +++.+++.+.+.++++++|.+|++|+++..-. ...- ++.+ .++.+.+..
T Consensus 117 ~g~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~-~~~~-------~~~~~~~~~~~~~~ 185 (242)
T 3del_B 117 QYRSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPS-IAQV-------VLKDFPALSTATID 185 (242)
T ss_dssp GSSCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEECHH-HHHH-------HGGGCTTEEEEEEE
T ss_pred CCCEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEecHH-HHHH-------HHHhCCCeEEecCc
Confidence 34678875 68888877766 77889999999999999999999999987522 1111 1112 236676644
Q ss_pred EEeee----eeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 91 QFVAN----FCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 91 ~l~I~----~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
..... ++++.+++ +|+-..+..++|.+
T Consensus 186 ~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 216 (242)
T 3del_B 186 LPEDQWVLGYGIGVASD-----------RPALALKIEAAVQE 216 (242)
T ss_dssp CCGGGCEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred cCcccccceEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 43333 55555543 56666777777765
No 17
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=93.50 E-value=0.19 Score=39.73 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=65.0
Q ss_pred CCCCCCccEEEEeCCCCcHHHHHHHhhCCC-CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeE
Q 036073 7 TPNDGTKVRISFKGSPGSFTEDAALKAYPN-CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLH 85 (241)
Q Consensus 7 ~~~~~~~~~ia~LGp~GtfS~~Aa~~~~~~-~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~ 85 (241)
+..+....+||+. .|+..+.-....+++ .+++.+.+.++++++|.+|++|+.+..-.. ....+......++.
T Consensus 103 ~~~dL~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~-----~~~~~~~~~~~~~~ 175 (227)
T 3tql_A 103 SKQGLKGKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGDTPL-----IKQWLKQNGRREYV 175 (227)
T ss_dssp STTTTTTCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESCHHH-----HHHHHHHTTCCSEE
T ss_pred CHHHhCCCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeChHH-----HHHHHHhCCCCCEE
Confidence 3344456789876 566666666666666 889999999999999999999999875221 11111111122366
Q ss_pred EEEEEEEeee-----eeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhc
Q 036073 86 IVGEVQFVAN-----FCLLALPGIREEKLKCVLSHPQALASSDIVQTQL 129 (241)
Q Consensus 86 I~~E~~l~I~-----~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~ 129 (241)
+.+....... .+++.+++ +|+-..+..++|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~l~~l 213 (227)
T 3tql_A 176 LIGKPVNDPNYFGKGVGIAVKKG-----------NQALLLKLNKALAAI 213 (227)
T ss_dssp EEEEECCCGGGCCSCBCCEEETT-----------CHHHHHHHHHHHHHH
T ss_pred EecCcccCccccccceEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 6654432222 24444432 677777777777663
No 18
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=93.30 E-value=0.087 Score=40.88 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=27.4
Q ss_pred EEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 205 IVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 205 i~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
+.+.++|+||.|.++++.|+++|||+..+.+.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~ 106 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSF 106 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence 34578999999999999999999999776654
No 19
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=93.28 E-value=0.51 Score=38.42 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=63.1
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccc-cccc-CCeEEEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYD-LLLR-HRLHIVGE 89 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d-~L~~-~~l~I~~E 89 (241)
...+|++. .|+..+..... +++.+++.+.+.++++++|.+|++|+++..-. +.. .+.+ .++.+.++
T Consensus 138 ~g~~i~~~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~~~ 205 (268)
T 3qax_A 138 QYSSVAVQ--TGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPS---------VGRVVLKDFPNLVATRL 205 (268)
T ss_dssp GSSCEEEE--TTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEECHH---------HHHHHGGGCTTEEEEEE
T ss_pred CCCEEEEe--cCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCcEEecC
Confidence 34578874 78877777665 67788999999999999999999999987521 111 1122 24667665
Q ss_pred EEEeee----eeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 90 VQFVAN----FCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 90 ~~l~I~----~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
..-+.. ++++.+++ +|+-..+-.++|.+
T Consensus 206 ~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 237 (268)
T 3qax_A 206 ELPPECWVLGCGLGVAKD-----------RPEEIQTIQQAITD 237 (268)
T ss_dssp ECCGGGCBCCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred ccCcccccccEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 444444 55655543 56666666777665
No 20
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=92.49 E-value=0.22 Score=40.75 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=43.4
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
-...+||+. .|+..+......+++.+++.+++.++++++|.+|++|+++..
T Consensus 148 L~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 148 LAQKKVGAQ--KGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp GC-CEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred hCCCeEEEe--cCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 345789974 688888887878888899999999999999999999999976
No 21
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=92.32 E-value=0.27 Score=39.12 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=42.1
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...+||+. .|+..+....+.+++.+++.+.+..+++++|.+|++|+++..
T Consensus 111 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 111 KGKKVGLE--NGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCEEEEe--cCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 45688884 677777777767778889999999999999999999999876
No 22
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=92.06 E-value=1 Score=36.41 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=62.2
Q ss_pred EEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccccccc--CCeEEEEEE-E
Q 036073 15 RISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLR--HRLHIVGEV-Q 91 (241)
Q Consensus 15 ~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~--~~l~I~~E~-~ 91 (241)
+||+. .|+..+...... +.+++.+++.++++++|.+|++|+.+..-. . +. .++.+ .++.+.++. .
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---~--~~---~~~~~~~~~~~~~~~~~~ 175 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD---Y--LV---PIVAESGGELMFVGDDVP 175 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH---H--HH---HHHHHTTTSSEEEEEEEE
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH---H--HH---HHHHhCCCCeEEecCCCC
Confidence 88885 688877777665 678999999999999999999999887522 1 11 11222 457777753 3
Q ss_pred EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 92 FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 92 l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
.+..++++.+++ +|+-..+..++|.+
T Consensus 176 ~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 176 LGGGVGMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp CSSCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 344566666554 45666666666665
No 23
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=92.01 E-value=0.46 Score=41.63 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=73.9
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP----NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIV 87 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~ 87 (241)
.+.++|..|+ ||-+|.++..+.. +.+.+++....+++.+|..|++|.++...-.. ..++...++++.
T Consensus 129 ~~~~~g~~g~-Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~--------~~~i~~g~lr~L 199 (301)
T 2qpq_A 129 TQVTYGSCGN-GTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSA--------IPFIKAGKLQAL 199 (301)
T ss_dssp CCCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEHHHH--------HHHHHTTSEEEE
T ss_pred CceEEecCCC-CcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcHHHH--------HHHHhcCCeEEE
Confidence 3456666654 8999998876542 34578999999999999999999999763211 111112223222
Q ss_pred EE----------------------EEEeeeeeeecCCCCCcCCeeEEE---ecHHHHHHHHHHHHhcCCceEeccCHHHH
Q 036073 88 GE----------------------VQFVANFCLLALPGIREEKLKCVL---SHPQALASSDIVQTQLGVARENIDDTASA 142 (241)
Q Consensus 88 ~E----------------------~~l~I~~~L~~~~g~~~~~i~~V~---SHpqal~Qc~~fl~~~~~~~~~~~sTa~A 142 (241)
+- +.+...+.|++++|++.+-+.++. ..-.+..+.++++++.++... ..+..+.
T Consensus 200 av~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 278 (301)
T 2qpq_A 200 AVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTA-SDGPEVF 278 (301)
T ss_dssp EECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTCEEE-EECHHHH
T ss_pred EEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCCcCC-CCCHHHH
Confidence 21 233445788888886432222221 111122345566666676543 3455665
Q ss_pred HHHHHh
Q 036073 143 AQYVAS 148 (241)
Q Consensus 143 a~~v~~ 148 (241)
.+.+.+
T Consensus 279 ~~~~~~ 284 (301)
T 2qpq_A 279 QKMVET 284 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 24
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=91.88 E-value=0.47 Score=39.97 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEE-E
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVG-E 89 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~-E 89 (241)
-...+|++ +.|+..+....++ +.+++.+.+..+++.+|.+|++|+++++-. ..... +......++.+.+ .
T Consensus 162 L~G~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~-~~~~~----~~~~~~~~l~~~~~~ 232 (283)
T 2yln_A 162 IKGVKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDEL-AVLDY----LKKNPNAGVKIVWSA 232 (283)
T ss_dssp CTTSEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEHH-HHHHH----HHHSTTSSEEEEEEC
T ss_pred hCCCEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecHH-HHHHH----HHhCCCCcEEEccCc
Confidence 34568886 6788777766554 568899999999999999999999998632 11111 1111112366665 3
Q ss_pred EEE-eeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 90 VQF-VANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 90 ~~l-~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
..- +..+.++.+++ +|+-..+..++|.+
T Consensus 233 ~~~~~~~~~i~~~k~-----------~~~l~~~i~~al~~ 261 (283)
T 2yln_A 233 PADEKVGSGLIVNKG-----------NDEAVAKFSTAINE 261 (283)
T ss_dssp CGGGCEEECCEEESS-----------CHHHHHHHHHHHHH
T ss_pred ccCCcccEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 332 34455655543 36666667777765
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.85 E-value=0.43 Score=38.72 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=29.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
.+.|.+..+|+||.|+++.+.|+.+|+|+..+...
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 45566667999999999999999999999887653
No 26
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=91.57 E-value=0.3 Score=41.30 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=43.3
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...+||+ +.|+..+......+++.+++.+.+..+++++|.+|++|+++.+
T Consensus 163 ~gk~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 163 KDQTLLV--NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp TTSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCCEEEE--ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 3568988 4788888887777888889999999999999999999999986
No 27
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=91.40 E-value=0.33 Score=40.08 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=57.2
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCC------CceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccccccc--CC
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPN------CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLR--HR 83 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~------~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~--~~ 83 (241)
...+||+. .|+..+......+++ .+++.+.+.++++++|.+|++|+.+..-.. . ..++.+ .+
T Consensus 136 ~g~~v~v~--~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~-~-------~~~~~~~~~~ 205 (259)
T 4dz1_A 136 NKYSIGYP--RGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPV-Y-------FTFKNKKKMP 205 (259)
T ss_dssp GGSCEEEE--TTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHH-H-------HHHHHTSCCC
T ss_pred CCCEEEEe--CCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHH-H-------HHHhccCCCc
Confidence 34689884 688888777777765 688999999999999999999999986321 1 111222 34
Q ss_pred eEEEEEEEEeeeeeeecCCC
Q 036073 84 LHIVGEVQFVANFCLLALPG 103 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~g 103 (241)
+.+.....-+..++++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 206 IESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEEETT
T ss_pred eEeecccCCCceEEEEEeCC
Confidence 66666555566677777665
No 28
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=91.38 E-value=0.99 Score=35.51 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEE
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEV 90 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~ 90 (241)
-...+|++. .|+..+....+ .+.+++.+.+..+++++|.+|++|+.+.+-.. ....+ .......+.+.+..
T Consensus 110 L~g~~i~~~--~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-~~~~~----~~~~~~~~~~~~~~ 180 (228)
T 2pyy_A 110 LPGKVVATT--AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPV-LLFYA----ANEGKGKVEIVGSI 180 (228)
T ss_dssp CTTCEEEEE--TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHH-HHHHH----HTTTTTTEEEEEEE
T ss_pred cCCCeEEEE--cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHH-HHHHH----HhCCCCcEEEeccc
Confidence 345689884 56665554443 35678899999999999999999999987321 11111 11111256676665
Q ss_pred EEeeeeeeecCCC
Q 036073 91 QFVANFCLLALPG 103 (241)
Q Consensus 91 ~l~I~~~L~~~~g 103 (241)
.-+..++++.+++
T Consensus 181 ~~~~~~~~~~~~~ 193 (228)
T 2pyy_A 181 LREESYGIILPNN 193 (228)
T ss_dssp EEEEEECCEECTT
T ss_pred ccceeEEEEEeCC
Confidence 5455566666543
No 29
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=91.21 E-value=0.16 Score=42.01 Aligned_cols=99 Identities=9% Similarity=-0.024 Sum_probs=61.2
Q ss_pred CccEEEEeCCCCcHHHHHHHhh-------CCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccccccc-CC
Q 036073 12 TKVRISFKGSPGSFTEDAALKA-------YPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLR-HR 83 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~-------~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~-~~ 83 (241)
...+||+. .|+..+.....+ +++.+++.+.+.++++++|.+|++|+.+..-.. ....+..... .+
T Consensus 126 ~g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-----~~~~~~~~~~~~~ 198 (268)
T 3hv1_A 126 AGKTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVY-----ANYYLEKSGVLDQ 198 (268)
T ss_dssp TTCCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHH-----HHHHHHHTTCGGG
T ss_pred CCCEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHH-----HHHHHHhCCCCCc
Confidence 44678885 566666544332 234678999999999999999999999976331 1111111111 34
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 84 LHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
+.+.+...-+..++++.+++ +|+-..+..++|.+
T Consensus 199 l~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 232 (268)
T 3hv1_A 199 YNVMPAGYEGESFAVGARKV-----------DKTLIKKINQGFET 232 (268)
T ss_dssp EEEEECSSCCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred eEECCCCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 66666544455566666543 46666666666655
No 30
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=91.15 E-value=0.55 Score=39.18 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=60.9
Q ss_pred CccEEEEeCCCCcHHHHHHHhhC----CCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEE
Q 036073 12 TKVRISFKGSPGSFTEDAALKAY----PNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIV 87 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~----~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~ 87 (241)
...+||+. .|+..+.....++ .+.+++++.+..+++.+|.+|++|+++..... ....+...- ....+.+.
T Consensus 129 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~-~~~~~~~~~---~~~~~~~~ 202 (287)
T 2vha_A 129 KGKAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDAL-LAGERAKAK---KPDNWDIV 202 (287)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHHHHTTSS---SGGGEEEE
T ss_pred CCCEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHH-HHHHHHhCC---CCCceEec
Confidence 34689874 7888877766654 35788999999999999999999999875221 111111000 01234454
Q ss_pred EEEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 88 GEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 88 ~E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
+....+..+.++.+++ +|+-..+..++|.+
T Consensus 203 ~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 232 (287)
T 2vha_A 203 GKPQSQEAYGCMLRKD-----------DPQFKKLMDDTIAQ 232 (287)
T ss_dssp SCCSCEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCccccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 4332234455655554 35666666666655
No 31
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=91.13 E-value=0.33 Score=39.07 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 13 KVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
..+||+. .|+..+....+.+++.+++.+++..+++++|.+|++|+.+..
T Consensus 125 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIVN--PGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEEC--TTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEEc--CCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 4678874 788888888888888999999999999999999999999875
No 32
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=90.94 E-value=0.33 Score=42.89 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=40.5
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCcceEEEee
Q 036073 13 KVRISFKGSPGSFTEDAALKAYP----NCETIPCDEFEEAFKAVELWLAEKAILPI 64 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPi 64 (241)
+.++|..|+ ||-+|.++..+.. +...+++....+++.+|..|++|.++...
T Consensus 139 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 139 KISLANAGI-GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp GCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEH
T ss_pred ceEEeCCCC-CcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEech
Confidence 345666654 8999999876542 34578999999999999999999999864
No 33
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=90.43 E-value=0.46 Score=37.76 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=38.3
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...+|++. .|+..+...... +.+++.+.+..+++++|.+|++|+++.+
T Consensus 115 ~g~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 162 (233)
T 1ii5_A 115 KNKEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFD 162 (233)
T ss_dssp TTCEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCCeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeC
Confidence 45688875 567666655543 5688999999999999999999999876
No 34
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=89.81 E-value=0.49 Score=38.79 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=42.4
Q ss_pred cEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 14 VRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
.+|+.. .|+..+....+.++..+++.+++..+++++|.+|++|+.+..
T Consensus 124 ~~i~v~--~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 124 ANIAAQ--KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp SEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CEEEec--CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 577764 688888888888999999999999999999999999998864
No 35
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=89.62 E-value=0.51 Score=38.11 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=38.9
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCCC----CceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYPN----CETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~~----~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
-...+|++. .|+..+.....++++ .+++.+.+..+++++|.+|++|+++.+
T Consensus 146 L~g~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 146 MKGANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp CTTCEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred hCCCEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEec
Confidence 345678885 577666665555432 367899999999999999999999885
No 36
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=89.23 E-value=0.94 Score=36.19 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=40.9
Q ss_pred ccEEEEeCCCCcHHHHHHHhhC--CCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 13 KVRISFKGSPGSFTEDAALKAY--PNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~--~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
..+||+. .|+..+....+.+ ++.+++.+.+.++++++|.+|++|+++..
T Consensus 111 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 111 GKHVGVL--QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp TCEEEEE--TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEE--cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 4678874 7888777777666 45788999999999999999999999875
No 37
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=88.35 E-value=11 Score=32.23 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=96.0
Q ss_pred ccEEEEeCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCcceEEEeeecccccce-------
Q 036073 13 KVRISFKGSPGSFTEDAALKAY--------PNCETIPCDE-----FEEAFKAVELWLAEKAILPIENSSGGSI------- 72 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS~~G~V------- 72 (241)
..|+++.-|+|+..+.++..+- +..++..+.+ -.+++++|..|.+|++++..-+ ..|.+
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 80 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDG 80 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGG
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhc
Confidence 4689999999998888877642 2245544443 3799999999999999986321 11111
Q ss_pred ------------------eccc-cccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHHHHhcC
Q 036073 73 ------------------HHNY-DLLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIVQTQLG 130 (241)
Q Consensus 73 ------------------~~t~-d~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~fl~~~~ 130 (241)
.+.+ +.+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -.++++..|
T Consensus 81 lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 156 (301)
T 2pfz_A 81 LPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVG 156 (301)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcC
Confidence 0001 12334678887754443333 444433 2456665 45542 222 257888889
Q ss_pred CceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCce-eEEEEeeC
Q 036073 131 VARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNIT-RFLVLARD 191 (241)
Q Consensus 131 ~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~T-RF~vl~~~ 191 (241)
+..++. +.++....+..+ .-.|+..+.......++.-+.+.+......++ .+++++++
T Consensus 157 a~pv~~-~~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~~ 215 (301)
T 2pfz_A 157 AQPVTV-QQAELAQAMATG--VIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNKK 215 (301)
T ss_dssp CEEEEC-CGGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEHH
T ss_pred Ccceec-CHHHHHHHHhcC--eeeEEecCccccccccHHHHhhhheecccccceeEEEEcHH
Confidence 887665 334444444433 22456777766656666444444443333333 34444443
No 38
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=87.97 E-value=0.99 Score=36.65 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=39.8
Q ss_pred ccEEEEeCCCCcHHHHHHHhh-CCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 13 KVRISFKGSPGSFTEDAALKA-YPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~-~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
..+||+ +.|+..+....++ +++.+++.+.+.++++++|.+|++|+++..
T Consensus 124 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 124 DAKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp TCCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred CceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 457887 5788777766654 456688999999999999999999999875
No 39
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=87.04 E-value=2.3 Score=33.91 Aligned_cols=100 Identities=7% Similarity=-0.107 Sum_probs=58.7
Q ss_pred CCccEEEEeCCCCcHHHHHHHh---hCCC--Cceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCe
Q 036073 11 GTKVRISFKGSPGSFTEDAALK---AYPN--CETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRL 84 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~---~~~~--~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l 84 (241)
-...+||+ ..|+..+..... .++. .+++. ..+.++++++|.+|++|+.+..-. .....+ ......++
T Consensus 113 L~g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~-~~~~~~----~~~~~~~~ 185 (246)
T 4eq9_A 113 IGGKSTEV--VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKI-GVETVI----KNQGLDNL 185 (246)
T ss_dssp CTTCEEEE--CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHH-HHHHHH----HHHTCTTE
T ss_pred hCCCEEEE--ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHH-HHHHHH----HhCCCCCc
Confidence 34568988 578888777666 4553 34553 359999999999999999997522 111111 11111246
Q ss_pred EEEEEEEEeee-eeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 85 HIVGEVQFVAN-FCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 85 ~I~~E~~l~I~-~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
.+......... .+++.+++ +|+-..+..++|.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 219 (246)
T 4eq9_A 186 KVIELPSDQQPYVYPLLAQG-----------QDELKSFVDKRIKE 219 (246)
T ss_dssp EEEECCCSSCCEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred eEecCcCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 66654333222 34444332 46666667777765
No 40
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=87.01 E-value=0.97 Score=37.37 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=40.8
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC-CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP-NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~-~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...+|++. .|+..+....+.++ ..+++.+.+..+++++|.+|++|+++.+
T Consensus 146 ~g~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~ 196 (272)
T 2pvu_A 146 KGKTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITD 196 (272)
T ss_dssp TTSCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCCeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeC
Confidence 34678885 57777777666666 6778899999999999999999999986
No 41
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=86.94 E-value=0.73 Score=37.72 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=29.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
++.|.+.-+|+||-++++-+.|+.+|+|+..+...
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 45555666899999999999999999999988653
No 42
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=86.43 E-value=11 Score=32.34 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=74.3
Q ss_pred CCccEEEEeCCCCcHHHHHHHh---hCCC----CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCC
Q 036073 11 GTKVRISFKGSPGSFTEDAALK---AYPN----CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHR 83 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~---~~~~----~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~ 83 (241)
....+||+..-.+...-..|.. +|.. ++++...+..++++++.+|++|+++......+.. .-...+
T Consensus 51 ~~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-------~~~g~~ 123 (341)
T 3un6_A 51 QQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKS-------KQKGSN 123 (341)
T ss_dssp CCEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHH-------HHTTCC
T ss_pred CceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHH-------HHCCCC
Confidence 4568899875333333344443 5532 5788999999999999999999998764321111 011234
Q ss_pred eEEEEEEEEeeeeeeecCCCC---CcCCe---eEEEecHH---HHHHHHHHHHhcCC-----ceEeccCHHHHHHHHHhc
Q 036073 84 LHIVGEVQFVANFCLLALPGI---REEKL---KCVLSHPQ---ALASSDIVQTQLGV-----ARENIDDTASAAQYVASN 149 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~g~---~~~~i---~~V~SHpq---al~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~ 149 (241)
+.+++-.. +-...|+++++. +++|+ ++|..... .....+.+|++.++ +.+.. +..++...+..+
T Consensus 124 ~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G 201 (341)
T 3un6_A 124 IKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH 201 (341)
T ss_dssp CEEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT
T ss_pred eEEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC
Confidence 55555422 234567777653 45666 46654331 11223557777654 33444 455566666554
No 43
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=86.18 E-value=8 Score=32.94 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=74.9
Q ss_pred CCCccEEEEeCCCCcHHHHHHHhhC----CC--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCC
Q 036073 10 DGTKVRISFKGSPGSFTEDAALKAY----PN--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHR 83 (241)
Q Consensus 10 ~~~~~~ia~LGp~GtfS~~Aa~~~~----~~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~ 83 (241)
.....||||......|.-.-...+| ++ ++++.+.+..++++++.+|++|++++..... ........+
T Consensus 27 ~~~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~-------~~~~~~g~~ 99 (324)
T 3ksx_A 27 EPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPP-------LFAQAAGAD 99 (324)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHH-------HHHHHTTCC
T ss_pred CCCeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCHHH-------HHHHhcCCC
Confidence 3456899999643223221122233 23 5778888999999999999999998643211 111112345
Q ss_pred eEEEEEEEE-eeeeeeecCCCC---CcCCee--EEEecHHH--HHHHHHHHHhcCC-----ceEeccCHHHHHHHHHhc
Q 036073 84 LHIVGEVQF-VANFCLLALPGI---REEKLK--CVLSHPQA--LASSDIVQTQLGV-----ARENIDDTASAAQYVASN 149 (241)
Q Consensus 84 l~I~~E~~l-~I~~~L~~~~g~---~~~~i~--~V~SHpqa--l~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~ 149 (241)
+.+++-... +-...|+++++. +++|++ +|...+-. ......+|++.++ +.+.. +.+++...+..+
T Consensus 100 ~~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G 177 (324)
T 3ksx_A 100 LLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG 177 (324)
T ss_dssp EEEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT
T ss_pred EEEEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC
Confidence 666665432 224567776653 445553 55544322 2234567777654 33444 566666666654
No 44
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=85.63 E-value=2.7 Score=36.98 Aligned_cols=165 Identities=10% Similarity=-0.024 Sum_probs=90.8
Q ss_pred cCCCCCCCccEEEEeCCCCcHHHHHHHhhC-------C-CCceeecCC-----HHHHHHHHHcCCcceEEEeeecc----
Q 036073 5 SVTPNDGTKVRISFKGSPGSFTEDAALKAY-------P-NCETIPCDE-----FEEAFKAVELWLAEKAILPIENS---- 67 (241)
Q Consensus 5 ~~~~~~~~~~~ia~LGp~GtfS~~Aa~~~~-------~-~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS---- 67 (241)
|+........|+++..|+|+..+.++..+. + ..++..+.+ -.+++++|..|.+|++++..-..
T Consensus 2 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~ 81 (327)
T 2hpg_A 2 SAVFGAKYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYV 81 (327)
T ss_dssp --CCCCSEEEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTS
T ss_pred CcccccceEEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhC
Confidence 344444556899999999988777776542 1 234444433 37899999999999998864210
Q ss_pred ------------------------------cccceec-ccccccc-CCeEEEEE-EEEeeeeeeecCCC-CCcCCee--E
Q 036073 68 ------------------------------SGGSIHH-NYDLLLR-HRLHIVGE-VQFVANFCLLALPG-IREEKLK--C 111 (241)
Q Consensus 68 ------------------------------~~G~V~~-t~d~L~~-~~l~I~~E-~~l~I~~~L~~~~g-~~~~~i~--~ 111 (241)
..|.+.. ..+.+.+ .++++.+- ......+ +..++. .+++|++ +
T Consensus 82 P~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~-~~~~~pI~s~~DLkG~K 160 (327)
T 2hpg_A 82 KDIGVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRH-FVTNKPIRKPEDLNGLR 160 (327)
T ss_dssp GGGGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EEESSCCSSGGGGTTCE
T ss_pred ccHHhccCCeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCccee-EecCCCCCCHHHHCCCE
Confidence 1121111 1112233 67888776 4444333 333433 3566766 5
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeeccc
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRI 175 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I 175 (241)
|..-+.. -..++++..|+..++..- ++....+..+ .-.++..+.......++.-+.+.+
T Consensus 161 iRv~~~~--~~~~~~~alGa~pv~m~~-~Evy~ALq~G--~VDg~~~p~~~~~~~~~~ev~ky~ 219 (327)
T 2hpg_A 161 IRTPGAP--AWQESIRSLGAIPVAVNF-GEIYTAVQTR--AVDGAELTYANVYNGGLYEVLKYM 219 (327)
T ss_dssp EECCSSH--HHHHHHHHHTSEEECCCG-GGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEE
T ss_pred EEeCCCH--HHHHHHHHcCCEeeecCH-HHHHHHHHcC--CeeEEECCHHHHHHcChhhhccEE
Confidence 6654322 235788888987665432 3333333333 234666666555444554333333
No 45
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=85.18 E-value=11 Score=32.31 Aligned_cols=170 Identities=10% Similarity=0.023 Sum_probs=92.8
Q ss_pred ccEEEEeCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCcceEEEeeeccccccee------
Q 036073 13 KVRISFKGSPGSFTEDAALKAY--------PNCETIPCDE-----FEEAFKAVELWLAEKAILPIENSSGGSIH------ 73 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS~~G~V~------ 73 (241)
..|+++.-|+|+..+.++..+. +..++..+.+ -.+++++|..|.+|++++..-+ ..|.+.
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 81 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSA-LGNEDPLFEIDS 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGG-GTTTCGGGGGGG
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhh-hhccCccccccc
Confidence 4789999999988888876542 1234444443 3799999999999999886321 111110
Q ss_pred -------------------ccc-cccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHHHHhcC
Q 036073 74 -------------------HNY-DLLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIVQTQLG 130 (241)
Q Consensus 74 -------------------~t~-d~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~fl~~~~ 130 (241)
+.+ +.+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -.++++..|
T Consensus 82 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 157 (301)
T 2pfy_A 82 VPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMG 157 (301)
T ss_dssp STTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcC
Confidence 001 12234678877654443333 444433 2455665 45442 222 246888889
Q ss_pred CceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCce-eEEEEee
Q 036073 131 VARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNIT-RFLVLAR 190 (241)
Q Consensus 131 ~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~T-RF~vl~~ 190 (241)
+..++.. .++....+..+ .-.|+..+.......++.-+.+.+......++ -++++++
T Consensus 158 a~pv~~~-~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~k~~~~~~~~~~~~~~~~n~ 215 (301)
T 2pfy_A 158 AVPTTVQ-TPEVPQAFSTG--VIDAMLTSPATGVDSQAWDYVKYYYDAQAFIPQSFVIANK 215 (301)
T ss_dssp SEEEECC-GGGHHHHHHTT--SCSBEEECHHHHHHTTGGGTCCEEEECCCCCCEEEEEEEH
T ss_pred Ccceecc-HHHHHHHHhcc--eeeeEecCccccccccHHHHhhhhcccccccceeeEEEcH
Confidence 8876652 33444444433 22355677665555565444444433222233 3444444
No 46
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=84.58 E-value=19 Score=31.05 Aligned_cols=172 Identities=9% Similarity=-0.031 Sum_probs=93.8
Q ss_pred ccEEEEeCCCCcHHHHHHHhhC------CCCceeecCC-----HHHHHHHHHcCCcceEEEeeec---------------
Q 036073 13 KVRISFKGSPGSFTEDAALKAY------PNCETIPCDE-----FEEAFKAVELWLAEKAILPIEN--------------- 66 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiEN--------------- 66 (241)
..|+++..|+|+..+.++..|- +..++..+.+ -.+++++|..|.+|++++..-+
T Consensus 2 ~lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 81 (316)
T 2vpn_A 2 NWRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPY 81 (316)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCe
Confidence 3689999999998888887642 2355555554 3899999999999999876211
Q ss_pred ---c-c-------cc--ceec-cccccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHHHHhc
Q 036073 67 ---S-S-------GG--SIHH-NYDLLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIVQTQL 129 (241)
Q Consensus 67 ---S-~-------~G--~V~~-t~d~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~fl~~~ 129 (241)
+ . .| .+.+ ..+.+.+.++++.+-......+.. .++. .+++|++ +|..-+-.. -.++++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~l 158 (316)
T 2vpn_A 82 LMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAF 158 (316)
T ss_dssp CSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHH
T ss_pred ecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHc
Confidence 0 0 01 1111 112233467888876544443333 4333 3566665 565533222 24788888
Q ss_pred CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCc-eeEEEEee
Q 036073 130 GVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNI-TRFLVLAR 190 (241)
Q Consensus 130 ~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~-TRF~vl~~ 190 (241)
|+..++..- ++....+..+ .-.++..+.......++.-+.+.+.+....+ +-++++.+
T Consensus 159 Ga~pv~m~~-~Evy~ALq~G--~VDg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 159 GATPTPLPW-GEVYGGLQTG--IIDGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp TCEEEECCG-GGHHHHHHHT--SCSEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC--CcceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 987765432 3333333333 2235566655555555544444444333333 33444444
No 47
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=83.89 E-value=3.4 Score=32.23 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=64.6
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc-cCCeEEEEEEEEeeeeeeecCCC-------CCcC
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL-RHRLHIVGEVQFVANFCLLALPG-------IREE 107 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~~~~g-------~~~~ 107 (241)
+.++++.+++.++++++.+|++|+++-++.-+.+ -...+. ...+. .....++++++ .+++
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISITAE-----REQNFDFSLPIF-------ASGLQIMVRNLESGTGDIRSID 108 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHH-----HHHHSEECSCSE-------EEEEEEEEEC-----CCCCSGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHH-----HHccceecccch-------hcceEEEEECCccccCCcCCHH
Confidence 3678888899999999999999998633211100 000010 11111 12233343332 1333
Q ss_pred Cee--EEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 108 KLK--CVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 108 ~i~--~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
|++ +|....... -..||.+.+...+.+.|..++.+.+..+ +-.+++.+...+.
T Consensus 109 dL~g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~~~~~ 163 (228)
T 2pyy_A 109 DLPGKVVATTAGST--AATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDAPVLL 163 (228)
T ss_dssp GCTTCEEEEETTSH--HHHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred HcCCCeEEEEcCcH--HHHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 332 343322211 3467877788888889999999998875 3457777766554
No 48
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=82.93 E-value=11 Score=29.33 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=66.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC-----CcCCee
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI-----REEKLK 110 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~-----~~~~i~ 110 (241)
+.++++..++.++++++.+|++|+++-++.-+.+-.-...++ .... +......++++++. +++|++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~--~s~p-------~~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGIT--FTQP-------YFSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEE--ECCC-------CEEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCccccccceeE--Eccc-------eeecCeEEEEECCCCCCCCCHHHhC
Confidence 367888889999999999999999875433111100000010 0111 12223444444331 233432
Q ss_pred --EEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 111 --CVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 111 --~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
+|....-. . ...+|.+.+.+.+.+.|..++.+.+..+ +-.|++.....+..
T Consensus 116 g~~v~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRDT-T-AVDWANFYQADVRETNNLTAAITLLQKK--QVEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCeEEEECCc-c-HHHHHHHcCCCeEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 34322211 1 1346766677888889999999998875 34577777665543
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=81.51 E-value=1.2 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.7
Q ss_pred eEEEEEe-cCCCchHHHHHHHHHHHCCceeeeee
Q 036073 202 KTSIVFT-LDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 202 ktsi~~~-~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
-+.|.+. ++++||.+.++++.|+++|||+-.|-
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~ 58 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMII 58 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEE
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEE
Confidence 4555444 78999999999999999999998874
No 50
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=80.66 E-value=8.1 Score=32.71 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=74.0
Q ss_pred hCCC--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEee---eeeeecCCCCCcC
Q 036073 33 AYPN--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVA---NFCLLALPGIREE 107 (241)
Q Consensus 33 ~~~~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I---~~~L~~~~g~~~~ 107 (241)
.|.+ .++.+++.++..+.+|.+|.+|++|+-.. .+-+.+.+.++.++-++.-+- .|.|+.+++ ...
T Consensus 40 ~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~--------aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~ 110 (231)
T 2ozz_A 40 QFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRL--------AAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESG 110 (231)
T ss_dssp TTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGG
T ss_pred HhcCCcEEEEEccChHHHHHHHHcCCCCEEEEecc--------cchhhhcccCeEEEEEcCCCccccCeEEEEeCC-Ccc
Confidence 4544 47889999999999999999999997422 222333334455554443332 366776665 335
Q ss_pred CeeEEEecHHHHHHHHHHHHh---cCCceEec-cCHHHHHHHHHhcCCCCeEEec
Q 036073 108 KLKCVLSHPQALASSDIVQTQ---LGVARENI-DDTASAAQYVASNGLRDAGVVA 158 (241)
Q Consensus 108 ~i~~V~SHpqal~Qc~~fl~~---~~~~~~~~-~sTa~Aa~~v~~~~~~~~aAI~ 158 (241)
+|++|--.+-...|+. |.+ .+.+...+ .+..++...+..+. -.|+|.
T Consensus 111 ~ikrVGvd~gS~dq~~--lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~--IDA~Iw 161 (231)
T 2ozz_A 111 NVKRVGLDSRSADQKI--MTDVFFGDSDVERVDLSYHESLQRIVKGD--VDAVIW 161 (231)
T ss_dssp GCCEEEECTTCHHHHH--HHHHHHTTSCCEEEECCHHHHHHHHHHTS--CCEEEE
T ss_pred ccEEEEecCCChhHHH--HHhhhcCCCeEEEEECCHHHHHHHHHcCC--ccEEEE
Confidence 6799998888888764 332 35555555 77788888887763 346665
No 51
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=79.35 E-value=1.5 Score=36.43 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=27.8
Q ss_pred eEEEEE-ecCCCchHHHHHHHHHHHCCceeeeee
Q 036073 202 KTSIVF-TLDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 202 ktsi~~-~~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
-+.|.+ .++++||.+.++++.|+++|||.-.|-
T Consensus 35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~ 68 (200)
T 4go7_X 35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 68 (200)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEe
Confidence 444443 579999999999999999999999884
No 52
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=78.75 E-value=19 Score=31.62 Aligned_cols=132 Identities=14% Similarity=-0.008 Sum_probs=77.4
Q ss_pred CccEEEEeCCCCcHHHHHHHhhC-------C-CCceeecC-----CHHHHHHHHHcCCcceEEEeeecccccc-------
Q 036073 12 TKVRISFKGSPGSFTEDAALKAY-------P-NCETIPCD-----EFEEAFKAVELWLAEKAILPIENSSGGS------- 71 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~-------~-~~~~~~~~-----s~~~v~~av~~g~~d~gVvPiENS~~G~------- 71 (241)
...|+++..|+|+..+.++..+. + ..++..+. +-.+++++|..|.+|++++..-.. .+.
T Consensus 34 ~~l~~~~~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~~ 112 (361)
T 2zzv_A 34 YRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYW-AGRMPVTAFL 112 (361)
T ss_dssp EEEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGG-TTTCGGGGGS
T ss_pred eEEEEeccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccc-cccCcHHHHH
Confidence 35799999999977777766542 2 24444444 458899999999999999864211 111
Q ss_pred --eeccc-------------------c-ccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHHH
Q 036073 72 --IHHNY-------------------D-LLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIVQ 126 (241)
Q Consensus 72 --V~~t~-------------------d-~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~fl 126 (241)
+...+ + .+.+.++++.+ ......+.+..+++ .+++|++ +|..-. .. ..+++
T Consensus 113 ~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~~--~~~~~ 188 (361)
T 2zzv_A 113 SSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-GM--IAEVF 188 (361)
T ss_dssp SCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-HH--HHHHH
T ss_pred hcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-HH--HHHHH
Confidence 10100 0 12245788887 55444444444333 3566766 555443 22 35788
Q ss_pred HhcCCceEeccCHHHHHHHHHhc
Q 036073 127 TQLGVARENIDDTASAAQYVASN 149 (241)
Q Consensus 127 ~~~~~~~~~~~sTa~Aa~~v~~~ 149 (241)
+..|+..++. +.++....+..+
T Consensus 189 ~~lGa~pv~~-~~~e~~~ALq~G 210 (361)
T 2zzv_A 189 AAAGASTVLL-PGGEVYPALERG 210 (361)
T ss_dssp HHTTCEEECC-CGGGHHHHHHTT
T ss_pred HHcCCeeeec-ChHHHHHHHHcC
Confidence 8888877665 344555555443
No 53
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=78.20 E-value=2.8 Score=34.62 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=57.6
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHH--HHHHHcCCcceEEEeeecccccceeccccccccCCeEEE-E
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEA--FKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIV-G 88 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v--~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~-~ 88 (241)
...+||+ +.|+..+....+ ++. +++.+.+..++ +++|.+|++| +++.-. .....+.. .....++.+. +
T Consensus 131 ~g~~i~v--~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~-~~~~~~~~---~~~~~~~~~~~~ 201 (271)
T 2iee_A 131 KGKKAAG--AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILNDY-YLQTLALA---AFPDLNITIHPD 201 (271)
T ss_dssp TTCEEES--CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEEEH-HHHHHHHH---HCTTSSCEECSS
T ss_pred CCCEEEE--eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEeccH-HHHHHHHH---hCCCCceEEecC
Confidence 4467886 578877766654 333 78899999999 9999999999 776422 11111110 1111245554 3
Q ss_pred EEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 89 EVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 89 E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
....+..++++.+++ +|+-..+-.++|.+
T Consensus 202 ~~~~~~~~~~~~~k~-----------~~~l~~~ln~al~~ 230 (271)
T 2iee_A 202 IKYMPNKQALVMKKS-----------NAALQKKMNEALKE 230 (271)
T ss_dssp CCEEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCcccceEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 333344555655543 46666666666655
No 54
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=77.15 E-value=5.6 Score=31.83 Aligned_cols=111 Identities=7% Similarity=0.007 Sum_probs=67.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC--CcCCeeEEE
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI--REEKLKCVL 113 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~--~~~~i~~V~ 113 (241)
+.++++. ++.+++.++.+|++|.++-++-. |-+ ++..+... .-++.....++.+++. ++.. +|.
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~--r~~~~~fs-~p~~~~~~~~~~~~~~~~dL~g--~ig 110 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSI--------TDE--RDEVIDFT-QNYIPPTASSYVATSDGADLSG--IVA 110 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHH--HHTTSEEE-EEEECCCEEEEEESSTTCCTTS--EEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcC--------CHH--HHhhcCcc-cccccCCeEEEEECCChHHhCC--CEE
Confidence 3567775 89999999999999987643221 211 11222222 2344555667776652 3344 333
Q ss_pred ecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 114 SHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 114 SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
...-. . -..||.+.+.+.+.+.|..++.+.+..+ +-.|++.....+.
T Consensus 111 v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 157 (232)
T 3i6v_A 111 AQTAT-I-QAGYIAESGATLVEFATPEETIAAVRNG--EADAVFADRDYLV 157 (232)
T ss_dssp EETTS-H-HHHHHHHSSSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EecCc-h-HHHHHHhcCCeEEEeCCHHHHHHHHHcC--CcCEEEEChHHHH
Confidence 22211 1 2456666678888899999999999875 4567787776554
No 55
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=75.22 E-value=25 Score=26.81 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCcH-HHHHHH---hhCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCe
Q 036073 10 DGTKVRISFKGSPGSF-TEDAAL---KAYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRL 84 (241)
Q Consensus 10 ~~~~~~ia~LGp~Gtf-S~~Aa~---~~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l 84 (241)
..+..+||+...-+.+ --.... +.+|+.++.. ..+-.++.+.+.+|++|+|++.-..... +
T Consensus 6 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~-------------~- 71 (222)
T 4ab5_A 6 EAGELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQN-------------G- 71 (222)
T ss_dssp TTEEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCT-------------T-
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcC-------------C-
Confidence 3455677765433322 111111 2357754432 2344678999999999999985321111 1
Q ss_pred EEEEEEEEeeeeeeecCCC--------CCcCCe---eEEEec-H-HHHHHHHHHHHhcCCc--eEeccCHHHHHHHHHhc
Q 036073 85 HIVGEVQFVANFCLLALPG--------IREEKL---KCVLSH-P-QALASSDIVQTQLGVA--RENIDDTASAAQYVASN 149 (241)
Q Consensus 85 ~I~~E~~l~I~~~L~~~~g--------~~~~~i---~~V~SH-p-qal~Qc~~fl~~~~~~--~~~~~sTa~Aa~~v~~~ 149 (241)
+..+......+++++.++ .+++++ ..|.-. . ....+..+|+.+.+.. ...++|...+..++.++
T Consensus 72 -~~~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 150 (222)
T 4ab5_A 72 -ISFQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR 150 (222)
T ss_dssp -EEEEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT
T ss_pred -eEEEEeecCcEEEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC
Confidence 222222333344444433 233333 334321 1 2234455666665433 45667776677777654
Q ss_pred CCCCeEEecCHhhHHh
Q 036073 150 GLRDAGVVASARAAEI 165 (241)
Q Consensus 150 ~~~~~aAI~s~~aa~~ 165 (241)
...+|.+...++.
T Consensus 151 ---~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 151 ---RGIAALPYWTVMP 163 (222)
T ss_dssp ---SCBEEEEHHHHHH
T ss_pred ---CeEEEcchHHhHH
Confidence 3567777776653
No 56
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=74.48 E-value=10 Score=30.00 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=68.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEE--eeeeeeecCCCC---CcCCee
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQF--VANFCLLALPGI---REEKLK 110 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l--~I~~~L~~~~g~---~~~~i~ 110 (241)
+.++++. ++.+++.++.+|++|+++-++ ..+-+ ....+.. .-++ .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~--------~~~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGM--------SITPS--RLKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSB--------BCCHH--HHTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecC--------cCCHH--HHhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 3577888 899999999999999876221 11111 1122323 3344 555667766552 344442
Q ss_pred --EEEecHHHHHHHHHHHHhc-CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhc
Q 036073 111 --CVLSHPQALASSDIVQTQL-GVARENIDDTASAAQYVASNGLRDAGVVASARAAEIY 166 (241)
Q Consensus 111 --~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~y 166 (241)
+|.... .... ..++.+. +.+.+.+.|..++.+.+..+ +-.|++.....+..+
T Consensus 118 g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQT-GTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHG--KSPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEET-TSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEEc-CcHH-HHHHHhCCCceEEEECCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 333222 2222 3455553 67788889999999998875 456888887766543
No 57
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=74.47 E-value=4.9 Score=35.27 Aligned_cols=52 Identities=10% Similarity=-0.104 Sum_probs=41.2
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCcceEEEee
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP----NCETIPCDEFEEAFKAVELWLAEKAILPI 64 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPi 64 (241)
.+.++|..|+ ||-+|.++..++. +...+|+....+++.+|..|++|.++...
T Consensus 142 ~~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 142 GKYSYGSSGT-CGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp TTCEEEESCT-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEH
T ss_pred CcEEEeCCCC-CcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcH
Confidence 3456666654 9999999876542 34578999999999999999999999754
No 58
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=74.36 E-value=28 Score=28.24 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=64.8
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCee--
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI----REEKLK-- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~----~~~~i~-- 110 (241)
.++++..++.++++++.+|++|+.. ++-.+-+- +..+.. ..-+......++++++. +++|++
T Consensus 73 ~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r----------~~~~~f-s~p~~~~~~~l~~~~~~~~i~~~~dL~g~ 140 (267)
T 3mpk_A 73 FEIIGVDTVEELIAKLRSGEADMAG-ALFVNSAR----------ESFLSF-SRPYVRNGMVIVTRQDPDAPVDADHLDGR 140 (267)
T ss_dssp EEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGG----------TTTEEE-CSCSEEECEEEEEESSTTSCSSGGGCTTC
T ss_pred EEEEecCCHHHHHHHHHCCCccEEe-cccCChhh----------hcceEe-chhhccCceEEEEECCCCCCCCHHHHCCC
Confidence 5778888999999999999999853 43322110 011111 11122233555555441 233332
Q ss_pred EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|....-. . -..||.+. +.+.+.+.|..++.+.+..+ +-.|+|.....+.
T Consensus 141 ~i~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~G--rvDa~i~~~~~~~ 192 (267)
T 3mpk_A 141 TVALVRNS-A-AIPLLQRRYPQAKVVTADNPSEAMLMVANG--QADAVVQTQISAS 192 (267)
T ss_dssp EEEEETTC-T-HHHHHHHHCTTSEEEEESSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred EEEEeCCc-h-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 33332221 1 23466653 67888899999999999876 3457787766554
No 59
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=73.74 E-value=17 Score=28.01 Aligned_cols=113 Identities=10% Similarity=0.107 Sum_probs=64.2
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCee--
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI----REEKLK-- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~----~~~~i~-- 110 (241)
.++++. ++.++++++.+|++|+++-++--+-+. +..+... .-+......|+++++. +++|++
T Consensus 43 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g~ 110 (227)
T 3tql_A 43 CTISNQ-PWDSLIPSLKLGKFDALFGGMNITTAR----------QKEVDFT-DPYYTNSVSFIADKNTPLTLSKQGLKGK 110 (227)
T ss_dssp EEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTG----------GGTEEEC-SCSBCCEEEEEEETTSCCCCSTTTTTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhH----------Hhheecc-cceeccceEEEEeCCCCCCCCHHHhCCC
Confidence 567775 899999999999999876332211110 0111111 1112234555555542 344442
Q ss_pred EEEecHHHHHHHHHHHHhc--C-CceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 111 CVLSHPQALASSDIVQTQL--G-VARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~--~-~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
+|....-... ..+|.+. + .+.+.+.|..++.+.+..+ +-.|++.....+..
T Consensus 111 ~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 111 IIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp EEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred EEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 3433222211 3455553 3 7788889999999988765 45688888776653
No 60
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=73.05 E-value=3.4 Score=35.05 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=39.6
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP-------NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~-------~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...||++.| .||-++.....++. +.+++++.+..+++.++.+|++|.++++
T Consensus 137 ~Gk~i~~~~-~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 137 KGRKIGVTA-PGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CCCEEEECC-CCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 346899876 57777766655431 3567899899999999999999999985
No 61
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=72.88 E-value=5.1 Score=31.87 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=64.3
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCe--eE
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKL--KC 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i--~~ 111 (241)
.++++. ++.++++++.+|++|+++.++--+-+.. ..+.. ..-+......++++++. +++|+ ++
T Consensus 45 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~----------~~~~f-s~p~~~~~~~~~~~~~~~~~~~~dL~g~~ 112 (237)
T 3kzg_A 45 CTFEAY-IFDDLFPALKNREVDLVIASMIITDERK----------KHFIF-SLPYMESNSQYITTVDSKISTFDDLHGKK 112 (237)
T ss_dssp EEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG----------GTCEE-CCCSBCCEEEEEEETTCSCCSGGGGTTCE
T ss_pred eEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh----------cccee-eeeeeecceEEEEECCCCCCCHHHhCCCE
Confidence 567777 7899999999999998764332221110 01111 01122333455665552 33333 23
Q ss_pred EEecHHHHHHHHHHHHhc-CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 112 VLSHPQALASSDIVQTQL-GVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
|.... ...+...+.+.. +.+.+.+.|..++.+.+..+ +-.|++.....+..
T Consensus 113 i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 164 (237)
T 3kzg_A 113 IGVRK-GTPYARQVLSENRNNQVIFYELIQDMLLGLSNN--QVDASLMDYEAAKY 164 (237)
T ss_dssp EEEET-TSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEec-CCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcC--CCCEEEeCcHHHHH
Confidence 43322 222233344443 56778889999999998875 34577777665554
No 62
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=71.92 E-value=35 Score=28.29 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCcHHHHHH-Hhh----CCC--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCe
Q 036073 12 TKVRISFKGSPGSFTEDAA-LKA----YPN--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRL 84 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa-~~~----~~~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l 84 (241)
...|||+......| ..|- ..+ +++ .+++.+.+-.++++++.+|++|+++....... ...-...++
T Consensus 3 ~~lrig~~~~~~~~-~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~-------~~~~~g~~~ 74 (308)
T 2x26_A 3 EALRIGYQKGSIGM-VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPI-------FAQAAGADL 74 (308)
T ss_dssp SEEEEEECTTCHHH-HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHH-------HHHHTTCCE
T ss_pred eEEEEEccCCchHH-HHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCcHHH-------HHHhcCCCe
Confidence 45789998543222 2222 112 334 56778888889999999999999986432100 000012344
Q ss_pred EEEEEEE-EeeeeeeecCCCC---CcCCee--EEEecHH--HHHHHHHHHHhcCCc---eE-eccCHHHHHHHHHhcCCC
Q 036073 85 HIVGEVQ-FVANFCLLALPGI---REEKLK--CVLSHPQ--ALASSDIVQTQLGVA---RE-NIDDTASAAQYVASNGLR 152 (241)
Q Consensus 85 ~I~~E~~-l~I~~~L~~~~g~---~~~~i~--~V~SHpq--al~Qc~~fl~~~~~~---~~-~~~sTa~Aa~~v~~~~~~ 152 (241)
.+++... .+....++++++. +++|++ +|...+. .......+|++.++. .. ...+..++...+..+.
T Consensus 75 ~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~-- 152 (308)
T 2x26_A 75 VYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN-- 152 (308)
T ss_dssp EEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS--
T ss_pred EEEEEecCCCCceEEEEeCCCCCCCHHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC--
Confidence 4444332 2234567776553 344543 5554322 122345677766653 21 2344566666666542
Q ss_pred CeEEecCH
Q 036073 153 DAGVVASA 160 (241)
Q Consensus 153 ~~aAI~s~ 160 (241)
-.|++...
T Consensus 153 vDa~~~~~ 160 (308)
T 2x26_A 153 VDAWAIWD 160 (308)
T ss_dssp SSEEEEET
T ss_pred CCEEEecc
Confidence 33454443
No 63
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=71.85 E-value=20 Score=27.57 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=63.3
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCee--
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI----REEKLK-- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~----~~~~i~-- 110 (241)
.++++. ++.++++++.+|++|+++-.+.-+-+- ...+.... -+......++++++. +++|++
T Consensus 43 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~~~-p~~~~~~~~~~~~~~~~i~~~~dL~g~ 110 (226)
T 1wdn_A 43 YELKPM-DFSGIIPALQTKNVDLALAGITITDER----------KKAIDFSD-GYYKSGLLVMVKANNNDVKSVKDLDGK 110 (226)
T ss_dssp EEEEEE-CGGGHHHHHHTTSSSEEEEEEECCHHH----------HTTSEECS-CCEEEEEEEEEETTCCSCSSSTTTTTC
T ss_pred EEEEEC-CHHHHHHHHhCCCCCEEEEcCcCCHHH----------hCcccccc-chhcCceEEEEeCCCCCCCCHHHhCCC
Confidence 566665 789999999999999987543311110 01111100 111223455555442 234432
Q ss_pred EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|....-. . ...||.+. +.+.+.+.|..++.+.+..+ +-.+++.+...+.
T Consensus 111 ~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 162 (226)
T 1wdn_A 111 VVAVKSGT-G-SVDYAKANIKTKDLRQFPNIDNAYMELGTN--RADAVLHDTPNIL 162 (226)
T ss_dssp EEEEETTS-H-HHHHHHHHCCCSEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred EEEEEcCC-c-HHHHHHHhCCCceEEEeCCHHHHHHHHHcC--CcCEEEeCcHHHH
Confidence 44433222 1 24567664 67778888999999988875 3457777765554
No 64
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=71.77 E-value=7 Score=32.49 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=40.9
Q ss_pred CCCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEee
Q 036073 10 DGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPI 64 (241)
Q Consensus 10 ~~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPi 64 (241)
+....|||+. ..||-++...+.++.+.+++.. ++.+...++.+|++|.+++.-
T Consensus 100 DLkGK~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 100 SLDGKRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp CCTTCEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred hcCCCEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 3445789986 4678888777777777676655 678999999999999988753
No 65
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=70.92 E-value=23 Score=30.42 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=53.4
Q ss_pred ccEEEEeCCCCcHHHHHHHhh-CC--C------CceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccccccc--
Q 036073 13 KVRISFKGSPGSFTEDAALKA-YP--N------CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLR-- 81 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~-~~--~------~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~-- 81 (241)
..+|+|-.|-.+..|.+...+ +. + .+.+...+..+++.+|.+|++|.+++... ++..+.+
T Consensus 116 gk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~~ 186 (310)
T 3n5l_A 116 SLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELTQ 186 (310)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHC
T ss_pred CCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHhC
Confidence 457888665555556665542 22 2 23456688899999999999999998632 1222221
Q ss_pred ----CCeEEEEEEEEeeeeeeecCCCC
Q 036073 82 ----HRLHIVGEVQFVANFCLLALPGI 104 (241)
Q Consensus 82 ----~~l~I~~E~~l~I~~~L~~~~g~ 104 (241)
.+++++++...--.+.++++++.
T Consensus 187 ~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 187 PEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp HHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred ccchhCEEEEEECCCCCCCcEEEECCC
Confidence 35788876654445677787774
No 66
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=70.49 E-value=41 Score=27.20 Aligned_cols=143 Identities=10% Similarity=-0.009 Sum_probs=70.5
Q ss_pred CCccEEEEeCCCCc-HHHHHHH---hhCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeE
Q 036073 11 GTKVRISFKGSPGS-FTEDAAL---KAYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLH 85 (241)
Q Consensus 11 ~~~~~ia~LGp~Gt-fS~~Aa~---~~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~ 85 (241)
.+..+||+...-+. +--.... +.+|+.++.. ..+-.++.+.+.+|++|+|++.......+... ..|.+..+.
T Consensus 90 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 166 (294)
T 1ixc_A 90 VGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEI---VNIAQEDLY 166 (294)
T ss_dssp CEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEE---EEEEEEEEE
T ss_pred CceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceE---EEEeeccEE
Confidence 34567776544332 2222222 2367755432 34567899999999999999864322111110 011111111
Q ss_pred EEEEEEEeeeeeeecCCCCCcCC---eeEEEec----HHHHHHHHHHHHhcCCc--e-EeccCHHHHHHHHHhcCCCCeE
Q 036073 86 IVGEVQFVANFCLLALPGIREEK---LKCVLSH----PQALASSDIVQTQLGVA--R-ENIDDTASAAQYVASNGLRDAG 155 (241)
Q Consensus 86 I~~E~~l~I~~~L~~~~g~~~~~---i~~V~SH----pqal~Qc~~fl~~~~~~--~-~~~~sTa~Aa~~v~~~~~~~~a 155 (241)
+ ..+-.|-|...+..+++| -..|... +..-.+..+|+.+.+.. . ..++|...+...+..+ ...
T Consensus 167 ~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi 239 (294)
T 1ixc_A 167 L----AVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG---AAS 239 (294)
T ss_dssp E----EEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT---SCB
T ss_pred E----EEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC---CeE
Confidence 1 122333333222233333 3444433 12234556777776543 2 4556666666666654 346
Q ss_pred EecCHhhH
Q 036073 156 VVASARAA 163 (241)
Q Consensus 156 AI~s~~aa 163 (241)
++.+...+
T Consensus 240 a~lp~~~~ 247 (294)
T 1ixc_A 240 SIVPASVA 247 (294)
T ss_dssp EEEEHHHH
T ss_pred EEechhhh
Confidence 77777653
No 67
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=70.01 E-value=7.2 Score=33.97 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=40.0
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCC--C-----CceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 13 KVRISFKGSPGSFTEDAALKAYP--N-----CETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~--~-----~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
..||+| |..||-+|.++..++. + ...+++.+..+++.++.+|++|..+..
T Consensus 146 gk~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~ 202 (327)
T 4ddd_A 146 GKRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDV 202 (327)
T ss_dssp TSEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEE
T ss_pred CCEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEc
Confidence 457886 7789999988776542 1 245899999999999999999999874
No 68
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=69.41 E-value=54 Score=28.15 Aligned_cols=171 Identities=6% Similarity=-0.053 Sum_probs=96.1
Q ss_pred ccEEEEeCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHcCCcceEEEeeecccc----------
Q 036073 13 KVRISFKGSPGSFTEDAALKAY--------PNCETIPCDE-----FEEAFKAVELWLAEKAILPIENSSG---------- 69 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~--------~~~~~~~~~s-----~~~v~~av~~g~~d~gVvPiENS~~---------- 69 (241)
..|+++.-|+|+-.+.++..+. +..++..+.+ -.+++++|..|.+|++++..-+ ..
T Consensus 4 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~P~~~~~~ 82 (312)
T 2xwv_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESAR-FQLFYPEAAVFA 82 (312)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGG-GGGTSGGGGGGG
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchh-hhhhccchhhhc
Confidence 4789998899998888886542 1244444444 4899999999999999976321 11
Q ss_pred -----------------ccee-cccccc-ccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHHHH
Q 036073 70 -----------------GSIH-HNYDLL-LRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIVQT 127 (241)
Q Consensus 70 -----------------G~V~-~t~d~L-~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~fl~ 127 (241)
|.+. +.++.+ .+.++++.+-......+. ..++. .+++|++ +|..-+.. -..++++
T Consensus 83 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~-~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~ 159 (312)
T 2xwv_A 83 LPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQT-TSNRAINSIADMKGLKLRVPNAA--TNLAYAK 159 (312)
T ss_dssp STTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EESSCCCSGGGGTTCEEEECSCH--HHHHHHH
T ss_pred CCcccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceee-ecCCCcCCHHHhCCCEEEeCCCH--HHHHHHH
Confidence 1110 011111 235788888777666543 34433 3566666 55554422 2356888
Q ss_pred hcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCcee-EEEEee
Q 036073 128 QLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITR-FLVLAR 190 (241)
Q Consensus 128 ~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TR-F~vl~~ 190 (241)
..|+..++..- ++....+..+ .-.++..+.......++.-+.+.+......++- ++++++
T Consensus 160 alGa~pv~m~~-~Evy~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 160 YVGASPTPMAF-SEVYLALQTN--AVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp HHTCEEEECCG-GGHHHHHHTT--SSSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred HcCCeeeecCH-HHHHHHHHcC--CcceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 88987665432 2333333332 234566665555555665445555443344433 444444
No 69
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=67.23 E-value=23 Score=27.30 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=70.3
Q ss_pred CCccEEEEeCCCCcH-HHHHHH---hhCCCCcee-ecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeE
Q 036073 11 GTKVRISFKGSPGSF-TEDAAL---KAYPNCETI-PCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLH 85 (241)
Q Consensus 11 ~~~~~ia~LGp~Gtf-S~~Aa~---~~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~ 85 (241)
.+..+||+...-+.+ --.... +.+|+.++. ...+..++.+.+.+|++|+|++.-..... +
T Consensus 10 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~-------------~-- 74 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETE-------------G-- 74 (232)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCT-------------T--
T ss_pred ceeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCC-------------C--
Confidence 345677765443322 111111 235775543 23567899999999999999986331111 1
Q ss_pred EEEEEEEeeeeeeecCCC--------CCcCCee---EEEecHH--HHHHHHHHHHhcCCc----eEeccCHHHHHHHHHh
Q 036073 86 IVGEVQFVANFCLLALPG--------IREEKLK---CVLSHPQ--ALASSDIVQTQLGVA----RENIDDTASAAQYVAS 148 (241)
Q Consensus 86 I~~E~~l~I~~~L~~~~g--------~~~~~i~---~V~SHpq--al~Qc~~fl~~~~~~----~~~~~sTa~Aa~~v~~ 148 (241)
+..+......+++++.++ .+++|+. .|...+. ...+..+|+.+.+.. ...++|...+..+++.
T Consensus 75 l~~~~l~~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 154 (232)
T 3ho7_A 75 LEDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVES 154 (232)
T ss_dssp EEEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHT
T ss_pred eEEEEecccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHc
Confidence 122222233344444333 3333332 2322211 123456666665443 3456676667777765
Q ss_pred cCCCCeEEecCHhhHH
Q 036073 149 NGLRDAGVVASARAAE 164 (241)
Q Consensus 149 ~~~~~~aAI~s~~aa~ 164 (241)
+ ...+|.+...++
T Consensus 155 g---~gi~~~p~~~~~ 167 (232)
T 3ho7_A 155 G---QGITFIPQLTVE 167 (232)
T ss_dssp T---CCEEEEEGGGGG
T ss_pred C---CcEEEecHHHhh
Confidence 4 457777777665
No 70
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=67.13 E-value=2.6 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=26.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
+.++. .++++||.+.++++.|+++|||+-.|-
T Consensus 18 ~Itv~-g~~~~~G~~a~if~~La~~~InVd~I~ 49 (167)
T 2dt9_A 18 QIGLI-GIPDQPGIAAKVFQALAERGIAVDMII 49 (167)
T ss_dssp EEEEE-EEECSTTHHHHHHHHHHHHTCCCSCEE
T ss_pred EEEEe-cCCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 34443 357899999999999999999998873
No 71
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=66.96 E-value=5.8 Score=37.40 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=29.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
-..|++..+|+||.+.++...+..+|||+..++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~ 486 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQ 486 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEE
Confidence 457778889999999999999999999998775
No 72
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=66.64 E-value=4.1 Score=32.15 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=28.2
Q ss_pred eEEEEE-ecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 202 KTSIVF-TLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 202 ktsi~~-~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
|.+++= ..++.||.+.++++.|++.|||+..|-+.
T Consensus 97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S 132 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS 132 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc
Confidence 555553 45789999999999999999999777543
No 73
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=65.87 E-value=30 Score=27.06 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=61.8
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCCcCCee-
Q 036073 33 AYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLK- 110 (241)
Q Consensus 33 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~~~~i~- 110 (241)
.+|+.++.- ..+..++.++|.+|++|+|++.......+. ....|.+..+.+ .+|-.|-|.. +..+++|+.
T Consensus 33 ~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l---~~~~l~~~~~~~----v~~~~hpla~-~~i~l~dL~~ 104 (218)
T 2y7p_A 33 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF---FQRRLFRHRYVC----MFRKDHPSAK-SPMSLKQFTE 104 (218)
T ss_dssp HCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTE---EEEEEEEECEEE----EEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCcce---eEEEeeeccEEE----EEcCCCCCCC-CCCCHHHHhh
Confidence 367765543 345578999999999999997422111111 011122222221 2344555543 334555443
Q ss_pred --EEEe-cH-HHHHHHHHHHHhcCCc---eEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 --CVLS-HP-QALASSDIVQTQLGVA---RENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 --~V~S-Hp-qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
.|.. .+ ....+..+++.+.+.. ...++|......+|+.+ ...+|.+..++.
T Consensus 105 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g---~Giailp~~~~~ 162 (218)
T 2y7p_A 105 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAV 162 (218)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHH
T ss_pred CCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCC---CEEEEcHHHHHH
Confidence 3422 21 1223355566666543 24456666666677654 346676766543
No 74
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=65.36 E-value=6.3 Score=34.09 Aligned_cols=50 Identities=10% Similarity=-0.068 Sum_probs=37.7
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYP-------NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~-------~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
....||++ +.||-++.....++. +.++++. ++.+++.++.+|++|.++++
T Consensus 117 LkGk~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 117 LKGKKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp GTTSEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred cCCCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 34568998 589988877766542 2455655 68899999999999998875
No 75
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=65.26 E-value=59 Score=27.07 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=74.1
Q ss_pred CccEEEEeCCCCcHH---HHHHH-hhCC----CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc-cC
Q 036073 12 TKVRISFKGSPGSFT---EDAAL-KAYP----NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL-RH 82 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS---~~Aa~-~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~ 82 (241)
...+|.+-+.+|++. ..|.. .+|. ++++++..+..+++++|.+|++|+++.+....+ .... ..
T Consensus 33 ~~~~i~~~~~~~~~~~~~~~a~~~g~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~--------~~~~~~~ 104 (346)
T 3qsl_A 33 AKVQIAVGGKPLIYYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTL--------SLQAKGQ 104 (346)
T ss_dssp SEEEEEESCTTSGGGHHHHHHHHTTHHHHTTCEEEEEECSSHHHHHHHHHTTSCSEEEEETHHHH--------HHHHTTC
T ss_pred CceEEEecCccchhhhHHHHHHHCCchHhhCCeEEEEecCChHHHHHHHHCCCCCEEccchHHHH--------HHHhCCC
Confidence 345666655655443 22221 1231 257788899999999999999999987644221 1111 23
Q ss_pred CeEEEEEEEEeeeeeeecCCCC-----CcCCee--EEEec-HH--HHHHHHHHHHhcCC-----ceEeccCHHHHHHHHH
Q 036073 83 RLHIVGEVQFVANFCLLALPGI-----REEKLK--CVLSH-PQ--ALASSDIVQTQLGV-----ARENIDDTASAAQYVA 147 (241)
Q Consensus 83 ~l~I~~E~~l~I~~~L~~~~g~-----~~~~i~--~V~SH-pq--al~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~ 147 (241)
++.+++.....-...++++++. +++|++ +|... +- .....+.+|++.++ +.+...+..++...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~ 184 (346)
T 3qsl_A 105 FYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALR 184 (346)
T ss_dssp CEEEEEESBSSCCEEEEEETTTCTTCCSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHH
T ss_pred CeEEEEecccCCCcEEEEecCcccCCCChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHH
Confidence 4555544333223456655532 445553 56544 22 23344677877654 4566767677777777
Q ss_pred hc
Q 036073 148 SN 149 (241)
Q Consensus 148 ~~ 149 (241)
.+
T Consensus 185 ~G 186 (346)
T 3qsl_A 185 SG 186 (346)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=65.07 E-value=17 Score=31.65 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=52.2
Q ss_pred ccEEEEeCCCCcHHHHHHHhh-CC--C-----CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc----
Q 036073 13 KVRISFKGSPGSFTEDAALKA-YP--N-----CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL---- 80 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~-~~--~-----~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---- 80 (241)
..+|+|-.|-++..|.+...+ +. + .+.++..+..+++.+|.+|++|.+++... ++..+.
T Consensus 126 gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~---------~~~~~~~~~p 196 (321)
T 3p7i_A 126 DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTE---------NLDKLKTSAP 196 (321)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHTHHHHCH
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechH---------HHHHHHHhCc
Confidence 357888666665556666552 22 1 23466788999999999999999998632 122121
Q ss_pred --cCCeEEEEEEEEeeeeeeecCCCC
Q 036073 81 --RHRLHIVGEVQFVANFCLLALPGI 104 (241)
Q Consensus 81 --~~~l~I~~E~~l~I~~~L~~~~g~ 104 (241)
..+++++++...--.+.++++++.
T Consensus 197 ~~~~~lrvl~~s~~~p~~~i~~~k~~ 222 (321)
T 3p7i_A 197 EKLKELKVIWKSPLIPGDPIVWRKNL 222 (321)
T ss_dssp HHHTTEEEEEECSCBCCCEEEEETTS
T ss_pred chhccEEEEEEcCCCCCCceeeeCCC
Confidence 235777775433234566676664
No 77
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=64.02 E-value=44 Score=25.20 Aligned_cols=145 Identities=11% Similarity=0.029 Sum_probs=71.1
Q ss_pred CCccEEEEeCCCCcHH-HHHH---HhhCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeE
Q 036073 11 GTKVRISFKGSPGSFT-EDAA---LKAYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLH 85 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS-~~Aa---~~~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~ 85 (241)
.+..+||+...-+.+- -... ++.+|+.++.. ..+-.++.+.+.+|++|+|++.-.....+... ..|.+..+.
T Consensus 3 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~---~~l~~~~~~ 79 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVT---EPLYDEPFF 79 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCCTTEEE---EEEEEEEEE
T ss_pred CCcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCCCCeeE---EEeeeceEE
Confidence 4567788764433221 1111 22367766543 34677899999999999999874321111100 001111111
Q ss_pred EEEEEEEeeeeeeecCCCCCcCCe---eEEEecHH--HHHHHHHHHHh-----c--CC-ceEeccCHHHHHHHHHhcCCC
Q 036073 86 IVGEVQFVANFCLLALPGIREEKL---KCVLSHPQ--ALASSDIVQTQ-----L--GV-ARENIDDTASAAQYVASNGLR 152 (241)
Q Consensus 86 I~~E~~l~I~~~L~~~~g~~~~~i---~~V~SHpq--al~Qc~~fl~~-----~--~~-~~~~~~sTa~Aa~~v~~~~~~ 152 (241)
+..+-.|-|......+++++ ..|...+. -..+..+++.+ . .. ....++|...+.+++.++
T Consensus 80 ----~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g--- 152 (219)
T 3jv9_A 80 ----VIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASG--- 152 (219)
T ss_dssp ----EEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHT---
T ss_pred ----EEEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcC---
Confidence 11122233333333344444 44443322 22344455533 2 12 234567777777777764
Q ss_pred CeEEecCHhhHHh
Q 036073 153 DAGVVASARAAEI 165 (241)
Q Consensus 153 ~~aAI~s~~aa~~ 165 (241)
...++.+...+..
T Consensus 153 ~gi~~~p~~~~~~ 165 (219)
T 3jv9_A 153 LAISVLPATALTE 165 (219)
T ss_dssp SCEEEEEGGGCCT
T ss_pred CcEEehhHHHHHh
Confidence 3567777765543
No 78
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=63.85 E-value=19 Score=28.95 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=58.2
Q ss_pred CccEEEEeCCCCcHHHHHHHhhC---C-CCc-eeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc-c--CC
Q 036073 12 TKVRISFKGSPGSFTEDAALKAY---P-NCE-TIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL-R--HR 83 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~---~-~~~-~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~--~~ 83 (241)
...+|+.. .||..+.....+. + ... .+...+..+++.+|.+|++|..+. +.. +++.+. + ..
T Consensus 117 ~g~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~---~~~------~~~~~~~~~~~~ 185 (243)
T 4gvo_A 117 AGKRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIS---TPF------AVDFQNKTSAIK 185 (243)
T ss_dssp TTCEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEE---CHH------HHHHHHHTCSSC
T ss_pred cCCeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEc---cHH------HHHHHHhhCCCc
Confidence 34688876 5776666655432 2 232 346788999999999999997653 211 112222 2 34
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHh
Q 036073 84 LHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ 128 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~ 128 (241)
+.++++..-+...+++.+++ +|+-..+-.++|.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~in~~l~~ 219 (243)
T 4gvo_A 186 EKVVGDVLSNAKVYFMLGKD-----------ETKLSKKVDEALQS 219 (243)
T ss_dssp EEEEEEEEECCEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred eEEeccCCCCCcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 67778777776777776654 35545555555554
No 79
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=63.25 E-value=33 Score=27.27 Aligned_cols=113 Identities=7% Similarity=0.037 Sum_probs=68.6
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEE--eeeeeeecCCC-C---CcCCee
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQF--VANFCLLALPG-I---REEKLK 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l--~I~~~L~~~~g-~---~~~~i~ 110 (241)
.++++. ++.++++++.+|++|+++..+. .+-+ ....+.. .-+. .....++.+++ . +++|++
T Consensus 72 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL~ 138 (268)
T 3qax_A 72 LEVREF-AFDALILNLKKHRIDAILAGMS--------ITPS--RQKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLTQ 138 (268)
T ss_dssp EEEEEC-CGGGHHHHHHHTSSSEECSCCB--------CCHH--HHTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGGG
T ss_pred EEEEec-CHHHHHHHHhCCCccEEeecCc--------cCHh--Hhcceee--ecceecccceEEEEECCCCCCCCHHHhC
Confidence 567777 8999999999999998763221 1111 1122333 3344 55566776655 2 344443
Q ss_pred --EEEecHHHHHHHHHHHHhc-CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhc
Q 036073 111 --CVLSHPQALASSDIVQTQL-GVARENIDDTASAAQYVASNGLRDAGVVASARAAEIY 166 (241)
Q Consensus 111 --~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~y 166 (241)
+|....-. .. ..++.+. +.+.+.+.|..++.+.+..+ +-.|++.....+..+
T Consensus 139 g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 139 YSSVAVQTGT-YQ-EHYLLSQPGICVRSFDSTLEVIMEVRYG--KSPVAVLEPSVGRVV 193 (268)
T ss_dssp SSCEEEETTS-HH-HHHHHTSTTCCEEEESCHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEecCc-HH-HHHHHhCCCceEEecCCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 34333222 11 3455553 67778888999999988875 356788877766544
No 80
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=63.13 E-value=31 Score=28.69 Aligned_cols=88 Identities=9% Similarity=-0.128 Sum_probs=51.3
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCe--eE
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKL--KC 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i--~~ 111 (241)
.++++..+-.+.++++.+|++|+++...... +. ..-...++.+++.....-...|+++++. +++|+ ++
T Consensus 36 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~----~~---~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk~ 108 (302)
T 3ix1_A 36 VDIVFPTNPTDPIQLTASGAIPLALSYQPDV----IL---ARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLT 108 (302)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSEEEECHHHH----HH---HHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSE
T ss_pred EEEecCCCCchHHHHHHCCCCCEEecCHHHH----HH---HHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCCE
Confidence 5777777777999999999999998642211 11 1112245666666554444677776542 34444 35
Q ss_pred EEecHH--HHHHHHHHHHhcCC
Q 036073 112 VLSHPQ--ALASSDIVQTQLGV 131 (241)
Q Consensus 112 V~SHpq--al~Qc~~fl~~~~~ 131 (241)
|....- .....+.+|++.++
T Consensus 109 i~~~~~~~~~~~~~~~l~~~Gl 130 (302)
T 3ix1_A 109 VGYPGIPVNEPILKTMVEAAGG 130 (302)
T ss_dssp EEECSCTTHHHHHHHHHHHTTC
T ss_pred EEeCCCcchHHHHHHHHHHcCC
Confidence 543322 22335677777653
No 81
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=62.91 E-value=49 Score=26.17 Aligned_cols=114 Identities=8% Similarity=0.054 Sum_probs=64.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCee-
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI----REEKLK- 110 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~----~~~~i~- 110 (241)
+.++++. ++.+++.++.+|++|+++-++.-+-+. +..+... .-+......++++++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEER----------RKAIDFS-DPYYDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHHH----------HTTEEEC-SCCEEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHHH----------HcCccee-cceeeccEEEEEECCCCCcCChHHhCC
Confidence 3567775 679999999999999977544322110 0111111 1112333455555442 233332
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 111 -CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 111 -~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
+|..-.- ... ..||.+. +.+.+.+.|..++.+.+..+ +-.++|.....+..
T Consensus 131 ~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKTG-TAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEETT-SHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CEEEEeCC-ChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHHH
Confidence 3433221 112 3466663 56778889999999998875 45677877765543
No 82
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=62.09 E-value=29 Score=27.56 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCee
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPG-----IREEKLK 110 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g-----~~~~~i~ 110 (241)
+.++++. +..++++++.+|++|+++.++..+ .+ ....+.. ..-+......++++++ .+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~--------~~--r~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKT--------DE--RSKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCC--------HH--HHTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCC--------Hh--Hhhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 3577888 999999999999999976432211 11 0111111 1112223344555443 1344443
Q ss_pred --EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 111 --CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 111 --~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
+|....-.. ...++.+. +...+.+.|..++.+.+..+ +-.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSG--QVDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcC--CCCEEEeChHHHHH
Confidence 444332221 24566653 56778889999999998875 34577777665543
No 83
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=61.81 E-value=6.4 Score=33.20 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=66.6
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCCC----CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc---cCCeE
Q 036073 13 KVRISFKGSPGSFTEDAALKAYPN----CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL---RHRLH 85 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~~----~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---~~~l~ 85 (241)
..|||+.+.+.+.-..++..+|.. .+++.+.+..+..+|+.+|++|++..-. ...++... ..++.
T Consensus 4 ~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~--------~~~l~~~~~~~g~~l~ 75 (241)
T 1xs5_A 4 TVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH--------VPHMQQFNQEHNGDLV 75 (241)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE--------HHHHHHHHHHHTCCEE
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCC--------HHHHHHHHHHCCCCEE
Confidence 478999976543234455556632 6899999999999999999999976421 11233222 24566
Q ss_pred EEEEEEEeeeeeeecCCCCCcCCee---EEEe--cHHHHHHHHHHHHhcCC
Q 036073 86 IVGEVQFVANFCLLALPGIREEKLK---CVLS--HPQALASSDIVQTQLGV 131 (241)
Q Consensus 86 I~~E~~l~I~~~L~~~~g~~~~~i~---~V~S--Hpqal~Qc~~fl~~~~~ 131 (241)
+++.+...- ..+...+=.+++|++ +|.- -|--....-.+|.+.|+
T Consensus 76 ~v~~~~~~p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aGl 125 (241)
T 1xs5_A 76 SVGNVHVEP-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGF 125 (241)
T ss_dssp EEEEEEECC-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTS
T ss_pred EEEeecccc-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCCC
Confidence 666554332 355555445677782 5543 33344445556765443
No 84
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=61.52 E-value=6.8 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=28.3
Q ss_pred eEEEE-EecCCCchHHHHHHHHHHHCCceeeeeeeec
Q 036073 202 KTSIV-FTLDEGPGVLTKALAVFALREINLTKVFVAR 237 (241)
Q Consensus 202 ktsi~-~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP 237 (241)
+.+++ ....+.||.+.++++.|++.|||+..|-+..
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe 133 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSE 133 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEET
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCC
Confidence 34444 2457899999999999999999998886543
No 85
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=61.43 E-value=56 Score=25.51 Aligned_cols=134 Identities=10% Similarity=-0.064 Sum_probs=70.0
Q ss_pred CCccEEEEeCCCCc-HHHHHHH---hhCCCCcee-ecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeE
Q 036073 11 GTKVRISFKGSPGS-FTEDAAL---KAYPNCETI-PCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLH 85 (241)
Q Consensus 11 ~~~~~ia~LGp~Gt-fS~~Aa~---~~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~ 85 (241)
.+..+||+...-+. +--.... +.+|+.++. ...+-.++.+.+.+|++|+|++.... .+
T Consensus 26 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~~--------------- 88 (238)
T 3onm_A 26 EGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--DS--------------- 88 (238)
T ss_dssp -CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC---C---------------
T ss_pred ceeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--CC---------------
Confidence 44567776533222 1112222 236776543 34667889999999999999986431 11
Q ss_pred EEEEEEEeeeeeeecCCCCC---cCCeeEEEe-cHHH-HHHHHHHHHhcCCce---EeccCHHHHHHHHHhcCCCCeEEe
Q 036073 86 IVGEVQFVANFCLLALPGIR---EEKLKCVLS-HPQA-LASSDIVQTQLGVAR---ENIDDTASAAQYVASNGLRDAGVV 157 (241)
Q Consensus 86 I~~E~~l~I~~~L~~~~g~~---~~~i~~V~S-Hpqa-l~Qc~~fl~~~~~~~---~~~~sTa~Aa~~v~~~~~~~~aAI 157 (241)
+..+......+++++.++-. ...+..|.- +... .....+|+.+.+... ..++|...+.+++..+ ...++
T Consensus 89 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Giai 165 (238)
T 3onm_A 89 HPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGVTA 165 (238)
T ss_dssp CCEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCBEE
T ss_pred cceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeEEE
Confidence 11222223334444444422 234444432 2222 344566777665532 3456666666666654 34667
Q ss_pred cCHhhHH
Q 036073 158 ASARAAE 164 (241)
Q Consensus 158 ~s~~aa~ 164 (241)
.+...++
T Consensus 166 lp~~~~~ 172 (238)
T 3onm_A 166 RPIEMMS 172 (238)
T ss_dssp EEGGGCC
T ss_pred echHHcc
Confidence 6665543
No 86
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=61.22 E-value=46 Score=26.84 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=62.1
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK-- 110 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~-- 110 (241)
+.++++.+ +.++++++.+|++|+++-++.-+ -+ ....+... .-+......|+++++. +++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~--------~~--r~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITIT--------DE--RKQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCC--------HH--HHTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCC--------HH--HHhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 35677775 99999999999999987432111 01 01111111 1122334456665543 233332
Q ss_pred EEEecHHHHHHHHHHHHhc---CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 CVLSHPQALASSDIVQTQL---GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~---~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|....-. .. ..||.+. +.+.+.+.+..++.+.+..+ +-.+++.+...+.
T Consensus 149 ~i~~~~g~-~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 201 (272)
T 2pvu_A 149 TIGVQNAT-TG-QEAAEKLFGKGPHIKKFETTVVAIMELLNG--GVDAVITDNAVAN 201 (272)
T ss_dssp CEEEETTS-HH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred eEEEEcCc-hH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcC--CccEEEeCHHHHH
Confidence 34332211 11 2455543 46677788899999988875 3457777766554
No 87
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=60.53 E-value=56 Score=27.07 Aligned_cols=138 Identities=11% Similarity=0.034 Sum_probs=71.6
Q ss_pred CCccEEEEeCCCCcHHHHH---HHh---hCCCC--ceeecCCHHHHHHHHHcCCcceEEEeeeccc---ccceecccccc
Q 036073 11 GTKVRISFKGSPGSFTEDA---ALK---AYPNC--ETIPCDEFEEAFKAVELWLAEKAILPIENSS---GGSIHHNYDLL 79 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~A---a~~---~~~~~--~~~~~~s~~~v~~av~~g~~d~gVvPiENS~---~G~V~~t~d~L 79 (241)
....+|++.++-|+|--.+ +.. .+++. ++.+..+-.+.+++|.+|++|+++....... .|.....++-.
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGK 97 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTC
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCC
Confidence 3567888876666553221 111 12343 4444567889999999999999987532211 11100011100
Q ss_pred ccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--EEEe-cHH--HHHHHHHHHHhcCCc-----eEeccCHHHHHHHH
Q 036073 80 LRHRLHIVGEVQFVANFCLLALPGI---REEKLK--CVLS-HPQ--ALASSDIVQTQLGVA-----RENIDDTASAAQYV 146 (241)
Q Consensus 80 ~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~V~S-Hpq--al~Qc~~fl~~~~~~-----~~~~~sTa~Aa~~v 146 (241)
...++..++.+. .-...|+++++. +++|++ +|.. .+- .......++++.+++ .+...+..++...+
T Consensus 98 ~~~~~~~v~~~~-~~~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 176 (314)
T 1us5_A 98 PVKTIRALAALY-PEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLM 176 (314)
T ss_dssp CCTTEEEEEEEE-EEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHH
T ss_pred CccchhehhhcC-cceEEEEEECCCCCCcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHH
Confidence 123555554332 224566665542 344443 3433 221 123456677776653 12455677788777
Q ss_pred Hhc
Q 036073 147 ASN 149 (241)
Q Consensus 147 ~~~ 149 (241)
..+
T Consensus 177 ~~G 179 (314)
T 1us5_A 177 QDK 179 (314)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 88
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=60.03 E-value=8.3 Score=35.78 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=28.7
Q ss_pred eEEEEE--ecCCCchHHHHHHHHHHHCCceeeeeeeec
Q 036073 202 KTSIVF--TLDEGPGVLTKALAVFALREINLTKVFVAR 237 (241)
Q Consensus 202 ktsi~~--~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP 237 (241)
++...+ .+.|+||.|.++-.+|++++|++.++-.+|
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~ 394 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKE 394 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecc
Confidence 455554 557999999999999999999998876654
No 89
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=59.80 E-value=12 Score=31.59 Aligned_cols=51 Identities=8% Similarity=-0.087 Sum_probs=39.4
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC----CCceeecC-CHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP----NCETIPCD-EFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~----~~~~~~~~-s~~~v~~av~~g~~d~gVvP 63 (241)
...|||+- .+||-+|...+.++. +.+++... ++.++..++.+|++|.++++
T Consensus 95 kGK~Iav~-~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 95 KEPALYVF-GNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp CSCCEECS-STTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEec-CCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 34578864 478888876665432 46778777 89999999999999999986
No 90
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=59.67 E-value=82 Score=26.81 Aligned_cols=115 Identities=12% Similarity=-0.051 Sum_probs=63.0
Q ss_pred Cce--eecCC-HHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee
Q 036073 37 CET--IPCDE-FEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK 110 (241)
Q Consensus 37 ~~~--~~~~s-~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~ 110 (241)
+++ +...+ ..++++++.+|++|+++......+ ...-...++.+++.....-...|+++++. +++|++
T Consensus 46 v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~-------~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DLk 118 (348)
T 3uif_A 46 VEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPI-------ILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDLK 118 (348)
T ss_dssp EEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHH-------HHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGGT
T ss_pred EEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHH-------HHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHcC
Confidence 456 45554 678899999999999995432111 11112345666655444445567776653 345553
Q ss_pred --EEEecHH--HHHHHHHHHHhcCC-----ceEeccCHHHHHHHHHhcCCCCeEEecCHh
Q 036073 111 --CVLSHPQ--ALASSDIVQTQLGV-----ARENIDDTASAAQYVASNGLRDAGVVASAR 161 (241)
Q Consensus 111 --~V~SHpq--al~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~ 161 (241)
+|...+- .......+|++.|+ +.+.. +.+++...+..+. -.|++....
T Consensus 119 Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~--vDa~~~~~~ 175 (348)
T 3uif_A 119 GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT--VDGFFSLFD 175 (348)
T ss_dssp TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS--SSEEEESTT
T ss_pred CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC--CCEEEechH
Confidence 5654322 22334677777664 33333 5566666666542 234554443
No 91
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=59.52 E-value=59 Score=25.17 Aligned_cols=122 Identities=15% Similarity=0.016 Sum_probs=61.7
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCCcCCe--
Q 036073 33 AYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKL-- 109 (241)
Q Consensus 33 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~~~~i-- 109 (241)
.+|+.++.. ..+-.++.+.+.+|++|+|++.-.....+... ..|.+..+.+ .++-+|-|...+..+++|+
T Consensus 55 ~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~----v~~~~hpl~~~~~i~~~dl~~ 127 (238)
T 2hxr_A 55 RYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEA---IPLLTESLAL----VVAQHHPLAVHEQVALSRLHD 127 (238)
T ss_dssp HCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEEE---EEEEEEEEEE----EEETTSGGGGCSEECGGGGGG
T ss_pred hCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCccccee---eeeccCcEEE----EEcCCCcccccCCCCHHHHhc
Confidence 467766543 34578899999999999999853211111100 0111111111 1223343433333344444
Q ss_pred -eEEEe-cHHH-HHHHHHHHHhcCCc--e-EeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 110 -KCVLS-HPQA-LASSDIVQTQLGVA--R-ENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 110 -~~V~S-Hpqa-l~Qc~~fl~~~~~~--~-~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
.-|.- .... .....+|+.+.+.. . ..++|...+..++..+ ...++.+...++
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi~~lp~~~~~ 185 (238)
T 2hxr_A 128 EKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRT---SLSTLLPAAIAT 185 (238)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHS---SCBEEEETHHHH
T ss_pred CCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CcEEEecHHHhc
Confidence 33432 2222 23355666665543 2 4456666666777664 346677766554
No 92
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=59.14 E-value=28 Score=29.05 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=60.4
Q ss_pred hCCCCceeec-CCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCCcCCe--
Q 036073 33 AYPNCETIPC-DEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKL-- 109 (241)
Q Consensus 33 ~~~~~~~~~~-~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~~~~i-- 109 (241)
.+|+.++... .+-.++.+.+.+|++|+|++.......|... ..|.+..+.++ .+-.|-|.. +..+++|+
T Consensus 130 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~v----~~~~hpl~~-~~i~~~dL~~ 201 (315)
T 1uth_A 130 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVCM----FRKDHPSAK-SPMSLKQFSE 201 (315)
T ss_dssp HCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEEE----EETTCSSCC-SSCCHHHHHH
T ss_pred HCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEEE----EeCCCCCcC-CCCCHHHHhc
Confidence 3577655433 3446788999999999999853321111111 11112222211 222333322 22334443
Q ss_pred -eEE-EecHH-HHHHHHHHHHhcCCc---eEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 110 -KCV-LSHPQ-ALASSDIVQTQLGVA---RENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 110 -~~V-~SHpq-al~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
..| +.... ......+|+.+.+.. ...++|.......+..+ ...++.+...++.
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~~ 260 (315)
T 1uth_A 202 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAVR 260 (315)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHHH
T ss_pred CCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHHH
Confidence 233 22211 123456777776543 24456666666666654 3467777766653
No 93
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=58.42 E-value=6.7 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.1
Q ss_pred cCCCchHHHHHHHHHHHCCceeeeeee
Q 036073 209 LDEGPGVLTKALAVFALREINLTKVFV 235 (241)
Q Consensus 209 ~~~~pGaL~~~L~~fa~~~iNLt~IeS 235 (241)
..++||.+.++++.|+++|||+..|-+
T Consensus 113 m~~~~Gv~a~i~~aL~~~~InI~~ist 139 (167)
T 2re1_A 113 MRSHVGVAAKIFRTLAEEGINIQMIST 139 (167)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCEEEE
T ss_pred cCCCcCHHHHHHHHHHHCCCcEEEEEc
Confidence 467899999999999999999988754
No 94
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=58.28 E-value=13 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=37.9
Q ss_pred CCccEEEEeCCCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 11 GTKVRISFKGSPGSFTEDAALKAYP-------NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~~~~-------~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
-...||++. .||.++.....++. +.++++. ++.+++.++.+|++|.++++
T Consensus 129 LkGk~i~v~--~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 129 LKGKRIAFQ--KGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp GTTCEEEEC--TTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred hCCCEEEec--CCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 345689874 89988887665542 2456666 79999999999999998875
No 95
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=57.05 E-value=15 Score=32.36 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 201 FKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 201 ~ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
.+..|.+.-+|+||-.+++-+.++.+|+|+..+...
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~ 56 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHH 56 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEE
Confidence 355666777999999999999999999999988765
No 96
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=56.46 E-value=5 Score=31.37 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=25.4
Q ss_pred cCCCchHHHHHHHHHHHCCceeeeeeeec
Q 036073 209 LDEGPGVLTKALAVFALREINLTKVFVAR 237 (241)
Q Consensus 209 ~~~~pGaL~~~L~~fa~~~iNLt~IeSRP 237 (241)
.+++||.+.++++.|+++|||.-.|-+-+
T Consensus 28 m~~~~g~~~~if~~La~~~I~vd~I~~s~ 56 (157)
T 3mah_A 28 KLLSWHFMRKLFEIFEFYQEPVDMVATSE 56 (157)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSCEECCS
T ss_pred CCCchhHHHHHHHHHHHcCCCEEEEEecC
Confidence 46889999999999999999998886643
No 97
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=56.01 E-value=46 Score=27.06 Aligned_cols=141 Identities=12% Similarity=0.026 Sum_probs=67.7
Q ss_pred CCccEEEEeCCCCcH-HHHHHH---hhCCCCcee-ecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc-cCCe
Q 036073 11 GTKVRISFKGSPGSF-TEDAAL---KAYPNCETI-PCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL-RHRL 84 (241)
Q Consensus 11 ~~~~~ia~LGp~Gtf-S~~Aa~---~~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~l 84 (241)
.+..+||....-+.+ --.... +.+|+.++. ...+-.++.+.+.+|++|+|++.-...-.+.. ...|. +..+
T Consensus 94 ~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~~ 170 (306)
T 3fzv_A 94 AGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIE---TEPLMPPQRP 170 (306)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEE---EEESSCCBCC
T ss_pred CceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccc---eeeeeecccc
Confidence 345677775433321 111111 235775443 23567788999999999999986432222211 11122 2222
Q ss_pred EEEEEEEEeeeeeeecCCCCCc---CCeeEEEec-HHHHHHHHHHHHhcCCc--e-EeccCHHHHHHHHHhcCCCCeEEe
Q 036073 85 HIVGEVQFVANFCLLALPGIRE---EKLKCVLSH-PQALASSDIVQTQLGVA--R-ENIDDTASAAQYVASNGLRDAGVV 157 (241)
Q Consensus 85 ~I~~E~~l~I~~~L~~~~g~~~---~~i~~V~SH-pqal~Qc~~fl~~~~~~--~-~~~~sTa~Aa~~v~~~~~~~~aAI 157 (241)
.+ .++-.|-|...+..++ .+-..|.-. +..-....+|+.+.+.. . ..++|......++..+ ...++
T Consensus 171 ~~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~ 243 (306)
T 3fzv_A 171 HA----LLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG---FGFSL 243 (306)
T ss_dssp EE----EEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT---SCBEE
T ss_pred EE----EecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CCEEE
Confidence 22 2344444443322222 233444432 22233445566665543 3 4456666666666653 23555
Q ss_pred cCHh
Q 036073 158 ASAR 161 (241)
Q Consensus 158 ~s~~ 161 (241)
.+..
T Consensus 244 lp~~ 247 (306)
T 3fzv_A 244 LVTR 247 (306)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 5543
No 98
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=55.87 E-value=77 Score=26.67 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=71.0
Q ss_pred CCccEEEEeCCCCcHHHHHHHh--hCC----CCceeecCCHH-HHHHHHHcCCcceEEEeeecccccceeccccccccCC
Q 036073 11 GTKVRISFKGSPGSFTEDAALK--AYP----NCETIPCDEFE-EAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHR 83 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa~~--~~~----~~~~~~~~s~~-~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~ 83 (241)
....+|+|+.-.+...-..|+. +|. +++++.+.+-. .++++|.+|++|+++...... +. ......+
T Consensus 14 ~~~l~ig~~~~~~~~p~~~A~~~G~~~~~Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~----~~---~~~~g~~ 86 (321)
T 2x7q_A 14 LPTLKVAYIPEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAF----IA---DIAKGNE 86 (321)
T ss_dssp CCCEEEEECCSGGGHHHHHHHHTTHHHHTTCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHHHH----HH---HHHTTCT
T ss_pred CceEEEEeeCCccchHHHHHHHCCcHHHCCceEEEEECCCCHHHHHHHHHcCCccEEecCcHHH----HH---HHHCCCC
Confidence 3467899984333322333332 442 25666766644 589999999999998653211 11 0011234
Q ss_pred -eEEEEEEEE-eeeeeeecCCCC----CcCCeeEEEecH-HHHH-HHHHHH-HhcCC----ceEeccCHHHHHHHHHhc
Q 036073 84 -LHIVGEVQF-VANFCLLALPGI----REEKLKCVLSHP-QALA-SSDIVQ-TQLGV----ARENIDDTASAAQYVASN 149 (241)
Q Consensus 84 -l~I~~E~~l-~I~~~L~~~~g~----~~~~i~~V~SHp-qal~-Qc~~fl-~~~~~----~~~~~~sTa~Aa~~v~~~ 149 (241)
+.+++-+.- |-.+.|+++++. +++|+++|.... -.-. ....++ ++.++ +.+...+..++...+..+
T Consensus 87 ~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DLK~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 87 NIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp TEEEEEEEECSCCEEEEEEESSCTTCSSGGGCCEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred cEEEEEEecCCCcceEEEECCCCCCCCChHHcceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 777665442 222456665432 456667776553 1111 223344 44454 456666766777766654
No 99
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=55.52 E-value=95 Score=26.29 Aligned_cols=147 Identities=11% Similarity=0.057 Sum_probs=83.8
Q ss_pred CccEEEEeCCCCcHHH--HHHHhhCC--C--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc---cC
Q 036073 12 TKVRISFKGSPGSFTE--DAALKAYP--N--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL---RH 82 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~--~Aa~~~~~--~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---~~ 82 (241)
...|||+.+- .+.+ +.+...+. + .+++.+.+..+...|+.+|++|.+.+=... .++... ..
T Consensus 4 ~~i~VG~~~~--p~~~i~~~v~~~l~k~Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~p--------yl~~~~k~~g~ 73 (246)
T 4ef1_A 4 SVLKVGASPV--PHAEILEHVKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHVP--------FFNEAVKENDY 73 (246)
T ss_dssp EEEEEEECTT--THHHHHHHHHHHHHHTTEEEEEEECSSSSHHHHHHHHTSCSEEEEEEHH--------HHHHHHHHHTC
T ss_pred cEEEEEEeCC--ChHHHHHHHHHHHHhcCCEEEEEEeCCchhHHHHHHCCCCCEEecCCHH--------HHHHHHHHCCC
Confidence 4578999842 2332 23344442 2 688999999999999999999999863321 222221 24
Q ss_pred CeEEEEEEEEeeeeeeecCCCCCcCCee---EEEecHHH--HHHHHHHHHhcCC------------------------ce
Q 036073 83 RLHIVGEVQFVANFCLLALPGIREEKLK---CVLSHPQA--LASSDIVQTQLGV------------------------AR 133 (241)
Q Consensus 83 ~l~I~~E~~l~I~~~L~~~~g~~~~~i~---~V~SHpqa--l~Qc~~fl~~~~~------------------------~~ 133 (241)
+|..++.+.+.. ..|.+.+=.+++|++ +|.---.+ .+..-..|.+.|+ ++
T Consensus 74 ~Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~ 152 (246)
T 4ef1_A 74 DFVNAGAIHLEP-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKF 152 (246)
T ss_dssp CEEEEEEEEECC-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEE
T ss_pred CEEEEeeccccc-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEE
Confidence 677777765543 567776556788886 55433222 2333345555442 33
Q ss_pred -EeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceee
Q 036073 134 -ENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILA 172 (241)
Q Consensus 134 -~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~ 172 (241)
++. +.++.++.+.++ .- .||+.+..-|-.-||....
T Consensus 153 ~~el-~aaql~~al~dg-~v-Daavin~n~a~~agl~p~~ 189 (246)
T 4ef1_A 153 NHES-DPAIMTTLYDNE-EG-AAVLINSNFAVDQGLNPKK 189 (246)
T ss_dssp EEEE-CGGGHHHHHHTT-CS-SEEEECHHHHHHTTCCHHH
T ss_pred eeec-CHHHHHHHhccc-cc-cEEEEechHHHHcCCCCcc
Confidence 333 344455555432 23 4555555555566887543
No 100
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=54.90 E-value=7.5 Score=32.65 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=51.6
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCCC----CceeecCCHHHHHHHHHc--CCcceEEEeeecccccceeccccccccCCeEE
Q 036073 13 KVRISFKGSPGSFTEDAALKAYPN----CETIPCDEFEEAFKAVEL--WLAEKAILPIENSSGGSIHHNYDLLLRHRLHI 86 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~~----~~~~~~~s~~~v~~av~~--g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I 86 (241)
..+||+ ..|+..+....+.+++ .+.+.+.+.++++++|.+ |++|..+..-. ...-.+ ......++.+
T Consensus 170 g~~vg~--~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~-~~~~~~----~~~~~~~l~~ 242 (294)
T 2rc8_A 170 GFRFGT--VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKA-LLDYEV----SIDADCKLLT 242 (294)
T ss_dssp TCCEEC--BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHH-HHHHHH----HTCSSSCEEE
T ss_pred CeEEEE--EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecHH-HHHHHH----hhCCCCCEEE
Confidence 457877 4688877777666653 234568999999999999 99998886421 011111 0001124666
Q ss_pred EEEEEEeeeeeeecCCC
Q 036073 87 VGEVQFVANFCLLALPG 103 (241)
Q Consensus 87 ~~E~~l~I~~~L~~~~g 103 (241)
+++..-...++++.+++
T Consensus 243 ~~~~~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 243 VGKPFAIEGYGIGLPPN 259 (294)
T ss_dssp CSCCEEEEEECCEECTT
T ss_pred cCCcccccceEEEecCC
Confidence 66544455566666654
No 101
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=54.47 E-value=8.4 Score=30.47 Aligned_cols=113 Identities=9% Similarity=0.017 Sum_probs=63.8
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCee-
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPG-----IREEKLK- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g-----~~~~~i~- 110 (241)
.++++. ++.+++.++++|++|+++.++.-+-+ . +..+.... -++.....++++++ .+++|++
T Consensus 56 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~------r----~~~~~fs~-p~~~~~~~~~~~~~~~~~i~~~~dL~~ 123 (239)
T 3kbr_A 56 LVVVPT-SWPNLMRDFADDRFDIAMSGISINLE------R----QRQAYFSI-PYLRDGKTPITLCSEEARFQTLEQIDQ 123 (239)
T ss_dssp EEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHH------H----HTTCEECS-CSEEECEEEEEEGGGGGGGSSHHHHSS
T ss_pred eEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHH------H----cCccccch-HHhccCcEEEEECCcccccCCHHHhcC
Confidence 567777 89999999999999988644321111 0 01111111 11222334444433 1344443
Q ss_pred ---EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 111 ---CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 111 ---~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
+|....... -..++.+. +.+.+.+.|..++.+.+..+ +-.|+|.....+..
T Consensus 124 ~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 179 (239)
T 3kbr_A 124 PGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDG--KADLMMTDAIEARL 179 (239)
T ss_dssp TTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcC--CcCEEEEchHHHHH
Confidence 444332221 13456553 56778888888999988875 44577877766653
No 102
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=54.40 E-value=55 Score=26.86 Aligned_cols=113 Identities=8% Similarity=-0.016 Sum_probs=64.0
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--E
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--C 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~ 111 (241)
.++++++ +.++++++.+|++|+++..+.- . +-+. ...+.... -+......++++++. +++|++ +
T Consensus 98 v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~-----~--t~~r--~~~~~~~~-p~~~~~~~l~~~~~~~i~s~~dL~G~~ 166 (283)
T 2yln_A 98 VEFKETQ-WDSMMAGLKAGRFDVVANQVGL-----T--SPER--QATFDKSE-PYSWSGAVLVAHNDSNIKSIADIKGVK 166 (283)
T ss_dssp EEEEECC-GGGHHHHHHHTSCSEECSSCCC-----C--SHHH--HHHEEECS-CSEEECEEEEEETTCSCCSGGGCTTSE
T ss_pred eEEEECC-HHHHHHHHHCCCcCEEEecCcc-----C--Chhh--hcceEecc-CeeeecEEEEEECCCCCCCHHHhCCCE
Confidence 5777877 8999999999999998743221 0 1100 00111110 112233455555542 344442 4
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
|..-.-.. -..+|++.+++.+.+.+..++.+.+..+ +-.|++.....+.
T Consensus 167 v~v~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~i~~~~~~~ 215 (283)
T 2yln_A 167 TAQSLTSN--YGEKAKAAGAQLVPVDGLAQSLTLIEQK--RADATLNDELAVL 215 (283)
T ss_dssp EEECTTSH--HHHHHHHTTCEEEECSSHHHHHHHHHTT--SCCEEEEEHHHHH
T ss_pred EEEecCch--HHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 54322211 2346766688888888888888888875 3457777665443
No 103
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=53.56 E-value=93 Score=25.59 Aligned_cols=142 Identities=18% Similarity=0.110 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCc-HHHHHH---HhhCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEE
Q 036073 13 KVRISFKGSPGS-FTEDAA---LKAYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIV 87 (241)
Q Consensus 13 ~~~ia~LGp~Gt-fS~~Aa---~~~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~ 87 (241)
..+||+...-+. +--... .+.+|+.++.. ..+..++.+.+.+|++|+|++.......|... ..|.+..+.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~-- 165 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKH---SLLRNERLM-- 165 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEE---EEEEEEEEE--
T ss_pred eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceE---EEeecceEE--
Confidence 567776543332 111122 22357765533 34678999999999999999853321111110 011111111
Q ss_pred EEEEEeeeeeeec-CCC-CCcCCe---eEEEecH----HHHHHHHHHHHhcCCc---eEeccCHHHHHHHHHhcCCCCeE
Q 036073 88 GEVQFVANFCLLA-LPG-IREEKL---KCVLSHP----QALASSDIVQTQLGVA---RENIDDTASAAQYVASNGLRDAG 155 (241)
Q Consensus 88 ~E~~l~I~~~L~~-~~g-~~~~~i---~~V~SHp----qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~a 155 (241)
+..+-.|-|.. ... .+++|+ ..|.-.+ ....+..+|+.+.+.. ...++|...+..++..+ ...
T Consensus 166 --~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (312)
T 2h9b_A 166 --VAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAG---EGI 240 (312)
T ss_dssp --EEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcC---CcE
Confidence 12233444544 332 444444 3444211 2234566677766543 24566666666667654 346
Q ss_pred EecCHhhHH
Q 036073 156 VVASARAAE 164 (241)
Q Consensus 156 AI~s~~aa~ 164 (241)
++.+...++
T Consensus 241 a~lp~~~~~ 249 (312)
T 2h9b_A 241 SLVPASTQS 249 (312)
T ss_dssp EEEEGGGGG
T ss_pred EEecchhhh
Confidence 666665543
No 104
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=52.67 E-value=26 Score=28.69 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=38.3
Q ss_pred CCCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 10 DGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 10 ~~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
+....|||+-+ .|+-++...+.++.+.+++.. .+.+...++.+|++|.++++
T Consensus 93 dLkGk~Ia~~~-~~~~~~~ll~~ll~~~~~~~~-~~~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 93 ALEGLRVAVPG-RHTTAYFLLSLYAQGFVPVEV-RYDRILPMVAQGEVEAGLII 144 (272)
T ss_dssp CCTTCEEEESC-TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEEC
T ss_pred HhCCCEEEeCC-CCchHHHHHHHHhccCceeec-ChHHHHHHHHCCCCCEEEEe
Confidence 34457899875 466556666666666666655 45689999999999999987
No 105
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=52.54 E-value=13 Score=33.85 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=53.2
Q ss_pred eEeccCHHHHHHHHHhcCCCCeEEecCHhh---HHhcCCceeecccCCCCCCceeEEEEeeC--CCCC--C--CCCCceE
Q 036073 133 RENIDDTASAAQYVASNGLRDAGVVASARA---AEIYGLNILADRIQDDPDNITRFLVLARD--PIMP--R--TDKPFKT 203 (241)
Q Consensus 133 ~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~a---a~~ygL~il~~~I~d~~~N~TRF~vl~~~--~~~~--~--~~~~~kt 203 (241)
.+..-|..++.+++..+. -+--..| |..+|.++.-.+-.+. +-=|.|.--... ...+ + ....+-+
T Consensus 192 ~i~~is~~e~~el~~~Ga-----~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~~~ 265 (421)
T 3ab4_A 192 KLEKLSFEEMLELAAVGS-----KILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKSEA 265 (421)
T ss_dssp BCSEECHHHHHHHHHTTC-----CSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECSEE
T ss_pred EccccCHHHHHHHHhcCC-----cCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCCEE
Confidence 333444566666654321 1222223 3457888766655443 445665311000 0111 1 1122345
Q ss_pred EEEEe-cCCCchHHHHHHHHHHHCCceeeee
Q 036073 204 SIVFT-LDEGPGVLTKALAVFALREINLTKV 233 (241)
Q Consensus 204 si~~~-~~~~pGaL~~~L~~fa~~~iNLt~I 233 (241)
.|.+. ++++||.+.++++.|+++|||+-.|
T Consensus 266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I 296 (421)
T 3ab4_A 266 KVTVLGISDKPGEAAKVFRALADAEINIDMV 296 (421)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEeccCCcccHHHHHHHHHHHcCCcEEEE
Confidence 55554 6899999999999999999999888
No 106
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=51.94 E-value=15 Score=30.68 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=35.0
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC--C-----CceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP--N-----CETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~--~-----~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...+|++ +.|+.++.....++. + .+++ ..+..+++.++.+|++|.++++
T Consensus 104 ~Gk~i~~--~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~vDa~~~~ 159 (308)
T 2x26_A 104 KGHKVAF--QKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGNVDAWAIW 159 (308)
T ss_dssp TTSEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTSSSEEEEE
T ss_pred CCCEEee--eCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCCCCEEEec
Confidence 3468998 568888876555442 1 2233 4468999999999999999875
No 107
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=51.44 E-value=22 Score=28.21 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=63.9
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCee-
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPG-----IREEKLK- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g-----~~~~~i~- 110 (241)
.++++. ++.+++.++.+|++|.++-++-.+- +. ...+... .-++.....++++++ .+++|++
T Consensus 46 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~--------~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~~ 113 (245)
T 3k4u_A 46 LKLVPT-SWDGLIPGLVTEKFDIIISGMTISQ--------ER--NLRVNFV-EPYIVVGQSLLVKKGLEKGVKSYKDLDK 113 (245)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSSCBCCH--------HH--HTTSEEC-SCSEEECEEEEEETTTTTTCCSGGGGCC
T ss_pred EEEEEc-cHHHHHHHHhCCCcCEEEecCcCCH--------HH--HhhcCcc-hhhheeceEEEEECCcccccCCHHHhcc
Confidence 566775 6999999999999998653322111 10 0111111 112223345555555 2345554
Q ss_pred ---EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 ---CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 ---~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|....-. .. ..+|.+. +.+.+.+.|..++.+.+..+ +-.|+|.....+.
T Consensus 114 ~g~~i~v~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 168 (245)
T 3k4u_A 114 PELTLVTKFGV-SA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNV 168 (245)
T ss_dssp SSCEEEEETTS-HH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHH
T ss_pred CCcEEEEeCCc-HH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHH
Confidence 34333222 22 3456553 67788889999999998865 4568888765544
No 108
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=50.84 E-value=81 Score=24.12 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=65.8
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCC----cCCee-
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIR----EEKLK- 110 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~----~~~i~- 110 (241)
+.++++. ++.++++++++|++|+ +.++-- +-+ ....+.. ..-+......++.+++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~--------~~~--r~~~~~~-s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISW--------SEK--RARQIDF-TPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEEC--------CHH--HHTTEEE-EEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccC--------CHh--HHhhcCC-CccccccceEEEEECCCCCCCCHHHhCC
Confidence 3566765 7999999999999998 444321 111 1122222 233445566777766532 33332
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 -CVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 -~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|....-.. -..+|.+. +.+.+.+.|..++.+++..+ +-.+++.....+.
T Consensus 118 ~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDGI--MHEYLAERGYGKDLVLTPTPADALRLLAAG--GCDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTSH--HHHHHHTTTCGGGEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEEeCch--HHHHHHhcCCCceEEEeCCHHHHHHHHHcC--CceEEEeccHHHH
Confidence 232222111 23567664 35778889999999998875 3457777766554
No 109
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=50.73 E-value=56 Score=28.12 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=75.8
Q ss_pred CCccEEEEeCCCCcHHHHH---HH---hh-C--CC--CceeecCCHHHHHHHHHcCCcceEEEeeecc---cccceeccc
Q 036073 11 GTKVRISFKGSPGSFTEDA---AL---KA-Y--PN--CETIPCDEFEEAFKAVELWLAEKAILPIENS---SGGSIHHNY 76 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~A---a~---~~-~--~~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS---~~G~V~~t~ 76 (241)
....+|+.-+|-|+|--.+ ++ +. + .+ +++.....-.+.+.++.+|++|++++..... ..|.. .+
T Consensus 31 ~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~--~f 108 (327)
T 4ddd_A 31 REYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLG--FY 108 (327)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCG--GG
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcC--cc
Confidence 3456788776777773322 11 11 1 23 4556667788999999999999999764311 11110 01
Q ss_pred ccc-ccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--EE-EecHH--HHHHHHHHHHhcCCc-----eEeccCHHHH
Q 036073 77 DLL-LRHRLHIVGEVQFVANFCLLALPGI---REEKLK--CV-LSHPQ--ALASSDIVQTQLGVA-----RENIDDTASA 142 (241)
Q Consensus 77 d~L-~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~V-~SHpq--al~Qc~~fl~~~~~~-----~~~~~sTa~A 142 (241)
|-= ...++..++-+.- -...|+++++. +++|++ +| +..+- .....+.++++.+++ .++..+.+++
T Consensus 109 ~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a 187 (327)
T 4ddd_A 109 EKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQ 187 (327)
T ss_dssp TTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHH
T ss_pred cccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHH
Confidence 100 1235666665543 34566766653 344443 44 32221 123345677766653 4677888888
Q ss_pred HHHHHhc
Q 036073 143 AQYVASN 149 (241)
Q Consensus 143 a~~v~~~ 149 (241)
...+..+
T Consensus 188 ~~aL~~G 194 (327)
T 4ddd_A 188 AQALCDN 194 (327)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8888765
No 110
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=49.97 E-value=10 Score=32.88 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=54.9
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc----cCC
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP----NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL----RHR 83 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~----~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~----~~~ 83 (241)
...||||.+|.... ..++..+|. +.+++.+.+..+..+|+.+|++|++..-.. ..++... ..+
T Consensus 39 ~~i~IG~~~~~~~~-~~~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~~--------~~l~~~~~~~~g~~ 109 (295)
T 1p99_A 39 KKVTIGVASNDTKA-WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHF--------AFLDQYKKAHKGTK 109 (295)
T ss_dssp -CEEEEESSSCCHH-HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEH--------HHHHHHHHHCTTCC
T ss_pred CeEEEEEeCCcHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCCH--------HHHHHHHHhcCCCC
Confidence 45899999665433 445555663 268899999999999999999999874321 1122221 235
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCe
Q 036073 84 LHIVGEVQFVANFCLLALPGIREEKL 109 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~g~~~~~i 109 (241)
+.+++.+...- ..+...+=.+++|+
T Consensus 110 l~~v~~~~~~p-~g~ys~~iksl~DL 134 (295)
T 1p99_A 110 ISALSTTVLAP-LGIYSDKIKDVKKV 134 (295)
T ss_dssp EEEEEEEEECC-CEEECSSCSCGGGC
T ss_pred EEEEEeecccc-ceeecCCCCChHHc
Confidence 66676654332 34554433467777
No 111
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=49.73 E-value=1.2e+02 Score=25.60 Aligned_cols=132 Identities=9% Similarity=0.040 Sum_probs=73.6
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCC---cCCee---
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIR---EEKLK--- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~---~~~i~--- 110 (241)
++.++.. -..+++++.+|++|+.+--.-+.+.. ..++.. +.++...+...-.-.+.|++++... ++|++
T Consensus 46 Ve~~~~~-~~~~~~AL~~G~iD~~~e~w~~~~~~---~~~~~~-~~~l~~l~~~~~~~~~~l~V~~~~~i~sisDL~~~~ 120 (280)
T 3tmg_A 46 AEIFSVT-TSIMYQYLASGKIDGTVSSWVPTADK---FYYEKL-KTKFVDLGANYEGTIQGFVVPSYVPISSISELKGKG 120 (280)
T ss_dssp EEEEECC-HHHHHHHHHTTSSSEEEEEEETTTTH---HHHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGGTTCG
T ss_pred eEEEECC-cHHHHHHHHCCCCcEEEeccCCcccH---HHHHHh-cCcEEEccccCCCceEEEEECCCCCCCCHHHHHhhH
Confidence 5667764 47889999999999987533333221 122222 2367777777656568888877543 44443
Q ss_pred -----EEEecHHHHH---HHHHHHHhcCC-c-eEeccC-HHH---HHHHHHhcCCCCeEEe-cCHhhHHhcCCceeec
Q 036073 111 -----CVLSHPQALA---SSDIVQTQLGV-A-RENIDD-TAS---AAQYVASNGLRDAGVV-ASARAAEIYGLNILAD 173 (241)
Q Consensus 111 -----~V~SHpqal~---Qc~~fl~~~~~-~-~~~~~s-Ta~---Aa~~v~~~~~~~~aAI-~s~~aa~~ygL~il~~ 173 (241)
+++.=|..+. .....++.++. . +..+.+ .+. +.+.+.+.+......+ .+.-.-..|+|++|+.
T Consensus 121 ~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 198 (280)
T 3tmg_A 121 DKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDD 198 (280)
T ss_dssp GGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred HHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHHCCCCEEEEEecCchhhhcCCeEEecC
Confidence 3454443322 22345566665 2 433333 221 1222333333444333 6666667899999974
No 112
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=49.43 E-value=18 Score=29.04 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.7
Q ss_pred eEEEE-EecCCCchHHHHHHHHHHHCCceeeeeee
Q 036073 202 KTSIV-FTLDEGPGVLTKALAVFALREINLTKVFV 235 (241)
Q Consensus 202 ktsi~-~~~~~~pGaL~~~L~~fa~~~iNLt~IeS 235 (241)
|.+++ -...+.||.+.++++.|++.|||+..|-+
T Consensus 98 ~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist 132 (181)
T 3s1t_A 98 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST 132 (181)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc
Confidence 55554 34678999999999999999999887754
No 113
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=48.52 E-value=5.7 Score=32.34 Aligned_cols=113 Identities=7% Similarity=-0.061 Sum_probs=59.5
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--E
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--C 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~ 111 (241)
.+++++ ++.++++++.+|++|+++-++- .+-+. +..+.... -+.....+++++++. +++|++ +
T Consensus 62 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~fs~-p~~~~~~~~~~~~~~~i~~~~dL~g~~ 129 (268)
T 3hv1_A 62 VEWQAI-DWDMKETELKNGTIDLIWNGYS--------VTDER--KQSADFTE-PYMVNEQVLVTKKSSGIDSVAGMAGKT 129 (268)
T ss_dssp EEEEEC-CGGGHHHHHHHTSCSEECSSCB--------CCHHH--HTTCEECC-CCEEECEEEEEEGGGCCCSSGGGTTCC
T ss_pred EEEEEC-CHHHHHHHHHCCCCCEEEecCc--------cCHHH--HhcCcCcH-HHeeCceEEEEECCCCCCCHHHhCCCE
Confidence 567777 4999999999999998762221 11111 11111111 122233455554432 233332 2
Q ss_pred EEecHHHHHHHHHHHHhc---------CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 112 VLSHPQALASSDIVQTQL---------GVARENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~---------~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
|..-. .... ..+|.+. +.+.+.+.|..++.+.+..+ +-.|+|.....+..
T Consensus 130 i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 188 (268)
T 3hv1_A 130 LGAQA-GSSG-YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSG--RIDGLLIDRVYANY 188 (268)
T ss_dssp EEEET-TCHH-HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred EEEEe-CCch-HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcC--CCCEEEeCHHHHHH
Confidence 22211 1111 2233322 25678888999999999876 34577777765543
No 114
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=46.57 E-value=37 Score=31.09 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=29.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
...|++.=.|.||.|.++-+.|+++|||+....++
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~ 377 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQ 377 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhcc
Confidence 45676666899999999999999999999887654
No 115
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=45.34 E-value=1e+02 Score=23.79 Aligned_cols=149 Identities=11% Similarity=-0.044 Sum_probs=70.7
Q ss_pred CCccEEEEeCCCCcH-HHHHH---HhhCCCCcee-ecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeE
Q 036073 11 GTKVRISFKGSPGSF-TEDAA---LKAYPNCETI-PCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLH 85 (241)
Q Consensus 11 ~~~~~ia~LGp~Gtf-S~~Aa---~~~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~ 85 (241)
.+..+||+...-+.+ --... ++.+|+.++. -..+-.++.+.+.+|++|+|++.......|.. ...|.+..+.
T Consensus 18 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~---~~~l~~~~~~ 94 (241)
T 3oxn_A 18 DQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLR---SEILGRVGVL 94 (241)
T ss_dssp CCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTTEE---EEEEECCCEE
T ss_pred CceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCccce---eEEeecccEE
Confidence 455677775332221 11111 1235776543 33556788999999999999985322111111 1112222322
Q ss_pred EEEEEEEeeeeeeecCCCCCcCCe---eEEEecH--HHHHHHHHHHHhcCCc--e-EeccCHHHHHHHHHhcCCCCeEEe
Q 036073 86 IVGEVQFVANFCLLALPGIREEKL---KCVLSHP--QALASSDIVQTQLGVA--R-ENIDDTASAAQYVASNGLRDAGVV 157 (241)
Q Consensus 86 I~~E~~l~I~~~L~~~~g~~~~~i---~~V~SHp--qal~Qc~~fl~~~~~~--~-~~~~sTa~Aa~~v~~~~~~~~aAI 157 (241)
++ ++-.|-|.. +..+++++ ..|.-.+ ....+..+|+.+. .. . ..++|...+..+++.+ ...||
T Consensus 95 ~v----~~~~hpl~~-~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g---~giai 165 (241)
T 3oxn_A 95 CL----LSKQHPLAN-QEMSLDDYLSHPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL---PIIIT 165 (241)
T ss_dssp EE----EETTSGGGG-SCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C---CCEEE
T ss_pred EE----EeCCCCccc-CCCCHHHHhcCCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC---CeEEE
Confidence 21 233333333 22333333 3333222 1123344444444 33 2 4566766667776654 45777
Q ss_pred cCHhhHHh----cCCcee
Q 036073 158 ASARAAEI----YGLNIL 171 (241)
Q Consensus 158 ~s~~aa~~----ygL~il 171 (241)
.+...+.. .+|..+
T Consensus 166 lp~~~~~~~~~~~~l~~~ 183 (241)
T 3oxn_A 166 VPADLAYLVAERYDLVVK 183 (241)
T ss_dssp EEHHHHHHHHHHTTEEEE
T ss_pred cHHHHHHHhcccCCceEe
Confidence 78776664 355444
No 116
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=45.18 E-value=28 Score=24.51 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=50.3
Q ss_pred EEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEe
Q 036073 111 CVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLA 189 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~ 189 (241)
-|=.++......+++|.+.+.....+.|..+|.+.+.+.. ++ ..|........-|++++.. |... ..+.+.+++++
T Consensus 11 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~~ 87 (132)
T 3lte_A 11 VVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE-PA-IMTLDLSMPKLDGLDVIRS-LRQNKVANQPKILVVS 87 (132)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC-CS-EEEEESCBTTBCHHHHHHH-HHTTTCSSCCEEEEEC
T ss_pred EEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC-CC-EEEEecCCCCCCHHHHHHH-HHhcCccCCCeEEEEe
Confidence 3445788888889999888888788888888888887653 43 4554443334455555543 3332 33567777776
Q ss_pred eC
Q 036073 190 RD 191 (241)
Q Consensus 190 ~~ 191 (241)
..
T Consensus 88 ~~ 89 (132)
T 3lte_A 88 GL 89 (132)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 117
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=45.07 E-value=26 Score=29.53 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=39.6
Q ss_pred cEEEEeCCCCcHHHHHHHhh-CCCCceeec-CCHHHHHHHHHcCCcceEEE
Q 036073 14 VRISFKGSPGSFTEDAALKA-YPNCETIPC-DEFEEAFKAVELWLAEKAIL 62 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~-~~~~~~~~~-~s~~~v~~av~~g~~d~gVv 62 (241)
+|||+. .||--+..+.+. +.+.++..+ .+..+++.++.+|++|.+|.
T Consensus 113 krVGvd--~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLD--SRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEE
Confidence 799997 799888887664 456666677 89999999999999999998
No 118
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=44.07 E-value=54 Score=25.49 Aligned_cols=114 Identities=5% Similarity=-0.055 Sum_probs=60.2
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCC-CC---CcCCee--
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALP-GI---REEKLK-- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~-g~---~~~~i~-- 110 (241)
.++++. ++.+++.++.+|++|.++-++--+ -+. +..+... .-+......+++++ +. +++|++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~--------~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYT--------KER--AEKYLYA-APIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCC--------HHH--HHHEEEC-CCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccC--------hhh--hhceeec-cceecCceEEEEECCCCCCCCHHHhCCC
Confidence 467777 999999999999999876332111 110 0011111 11222344555555 32 234442
Q ss_pred EEEecH--HHHHHHHHHHHhcC---CceEec-cCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 CVLSHP--QALASSDIVQTQLG---VARENI-DDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 ~V~SHp--qal~Qc~~fl~~~~---~~~~~~-~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|.... ......++++...+ ++.... .|..++.+.+..+ +-.++++....+.
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~ 174 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDG--QFDYKIFDKIGVE 174 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcC--CceEEEecHHHHH
Confidence 443322 12233344444443 344434 4788888888875 4557777766554
No 119
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=43.35 E-value=1.3e+02 Score=24.37 Aligned_cols=121 Identities=16% Similarity=0.039 Sum_probs=58.2
Q ss_pred CCCCceeecC-CHHHHHHHHHcCCcceEEEee---ecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCCcCCe
Q 036073 34 YPNCETIPCD-EFEEAFKAVELWLAEKAILPI---ENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKL 109 (241)
Q Consensus 34 ~~~~~~~~~~-s~~~v~~av~~g~~d~gVvPi---ENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~~~~i 109 (241)
+|+.++.... +-.++.+.+.+|++|+|++.. .....+.. ...|.+..+.++ .+-.|-+. ....+++|+
T Consensus 127 ~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~l~---~~~l~~~~~~~v----~~~~~pl~-~~~i~~~dL 198 (310)
T 2esn_A 127 APGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGIQ---AHDWFADRYVVV----ARRDHPRL-AGAPTLEGY 198 (310)
T ss_dssp STTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCCCTTEE---EEEEEEECEEEE----EESSCTTC-SSSCCHHHH
T ss_pred CCCeEEEEEeCCcccHHHHHHcCCCCEEEecCcccccCCcCcc---eeeeeccceEEE----EeCCCCCc-CCCCCHHHH
Confidence 5776544333 234678889999999999862 21111100 001111121111 12223222 122233333
Q ss_pred ---eEEEecHH-H-HHHHHHHHHhcCCc---eEeccCHHHHHHHHHhcCCCCeEEecCHhhHHh
Q 036073 110 ---KCVLSHPQ-A-LASSDIVQTQLGVA---RENIDDTASAAQYVASNGLRDAGVVASARAAEI 165 (241)
Q Consensus 110 ---~~V~SHpq-a-l~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 165 (241)
..|.-.+. . -.+..+|+.+.+.. ...++|.......+..+ ...++.+...++.
T Consensus 199 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~lp~~~~~~ 259 (310)
T 2esn_A 199 LAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGST---DFLLTAPRHAARA 259 (310)
T ss_dssp HTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTS---SCEEEEEHHHHHH
T ss_pred hcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcC---CeEEEcHHHHHHH
Confidence 33433321 1 23456677776543 24566666666666653 3467777776654
No 120
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=43.17 E-value=15 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 204 SIVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 204 si~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
.+-|..|.|||+|.+.|+.+.. +-|+|-.+=|
T Consensus 435 ~~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr 466 (514)
T 1tdj_A 435 LYSFEFPESPGALLRFLNTLGT-YWNISLFHYR 466 (514)
T ss_dssp EEEEECCCCTTHHHHHHHHHCS-CCCCCEEECB
T ss_pred EEEEeCCCCCCHHHHHHHhcCC-CceEEEEeec
Confidence 3678899999999999999974 4566655544
No 121
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=42.22 E-value=57 Score=26.82 Aligned_cols=112 Identities=9% Similarity=0.065 Sum_probs=63.7
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--E
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--C 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~ 111 (241)
.++++.. +.++++++.+|++|+++..+.- +.+. ...+... .-+......++++++. +++|++ +
T Consensus 99 v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk~ 166 (291)
T 2yjp_A 99 VEFVLTE-AANRVEYVRSGKVDLILANFTQ--------TPER--AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQT 166 (291)
T ss_dssp EEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTSE
T ss_pred EEEEEcc-HHHHHHHHhCCCeeEEEeCCCC--------ChHH--Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCCE
Confidence 5667765 6899999999999988743221 1110 1111111 1123334566666653 334442 4
Q ss_pred EEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 112 VLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
|..- ..... ..||.+. +.+.+.+.+..++.+.+..+ +-.|++.....+.
T Consensus 167 v~~~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 217 (291)
T 2yjp_A 167 LLVN-KGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDG--RGVALAHDNALLW 217 (291)
T ss_dssp EEEE-TTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEe-cCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcC--CccEEEecHHHHH
Confidence 4432 22222 3455553 56778888989999988875 3457777665554
No 122
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=42.05 E-value=1.1e+02 Score=22.97 Aligned_cols=139 Identities=14% Similarity=0.026 Sum_probs=69.5
Q ss_pred CccEEEEeCCCCcH-HHHHH---HhhCCCCcee-ecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEE
Q 036073 12 TKVRISFKGSPGSF-TEDAA---LKAYPNCETI-PCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHI 86 (241)
Q Consensus 12 ~~~~ia~LGp~Gtf-S~~Aa---~~~~~~~~~~-~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I 86 (241)
+..+||+...-+.+ =-.+. ++.+|+.++. ...+-.++.+.+.+|++|+|++.-.....+.. ...|.+..+.+
T Consensus 5 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~~~ 81 (209)
T 2ql3_A 5 GPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQ---TVPLMTREPMV 81 (209)
T ss_dssp EEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEE---EEEEEEECCEE
T ss_pred eeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCce---EEEeecCceEE
Confidence 45677765443321 11121 2346775543 34567889999999999999986322111111 11122222222
Q ss_pred EEEEEEeeeeeeecCC-CCCcCCe---eEEEecHHHH-HHHHHHHHhcCCc---eEeccCHHHHHHHHHhcCCCCeEEec
Q 036073 87 VGEVQFVANFCLLALP-GIREEKL---KCVLSHPQAL-ASSDIVQTQLGVA---RENIDDTASAAQYVASNGLRDAGVVA 158 (241)
Q Consensus 87 ~~E~~l~I~~~L~~~~-g~~~~~i---~~V~SHpqal-~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~ 158 (241)
..+-.|-|...+ ..+++++ ..|...+... .+..+|+.+.+.. ...++|.....++++.+ ...++.
T Consensus 82 ----v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi~~l 154 (209)
T 2ql3_A 82 ----VLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRG---LGWTLL 154 (209)
T ss_dssp ----EEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHT---SCBEEE
T ss_pred ----EEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcC---CeEEEe
Confidence 223344444333 3444444 3444322222 3455666665542 24566777677777664 235565
Q ss_pred CH
Q 036073 159 SA 160 (241)
Q Consensus 159 s~ 160 (241)
+.
T Consensus 155 p~ 156 (209)
T 2ql3_A 155 LQ 156 (209)
T ss_dssp SC
T ss_pred eC
Confidence 54
No 123
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=42.01 E-value=19 Score=34.56 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=28.2
Q ss_pred ceEEEEE-ecCCCchHHHHHHHHHHHCCceeeeee
Q 036073 201 FKTSIVF-TLDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 201 ~ktsi~~-~~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
+.+.|.+ .++++||...++|+.|+++|||.-.|.
T Consensus 443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~ 477 (600)
T 3l76_A 443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMII 477 (600)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence 4555544 579999999999999999999998773
No 124
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=41.37 E-value=1.6e+02 Score=24.95 Aligned_cols=159 Identities=8% Similarity=-0.088 Sum_probs=84.2
Q ss_pred CCccEEEEeCCCCcH--HHHHHHhhCC--C--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc-cCC
Q 036073 11 GTKVRISFKGSPGSF--TEDAALKAYP--N--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL-RHR 83 (241)
Q Consensus 11 ~~~~~ia~LGp~Gtf--S~~Aa~~~~~--~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~ 83 (241)
....+||+..-.... ++.++. .+. + +++++..+-..+++++.+|++|+.+--.-+. ..+.++... +.+
T Consensus 7 ~~~I~ig~~~~~e~~~~~~i~~~-~Le~~Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~~ 81 (309)
T 1r9l_A 7 GITVNPVQSTITEETFQTLLVSR-ALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDKK 81 (309)
T ss_dssp TCEECEEECSCGGGHHHHHHHHH-HHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGGT
T ss_pred CceEEEeecCccHHHHHHHHHHH-HHHHcCCCeEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCCc
Confidence 445788887532221 122222 222 2 4555545778899999999999986322221 122333322 235
Q ss_pred eEEEEEEEEeeeeeeecCC------C-CCcCCee----------------EEEecHHHHH---HHHHHHHhcCCc--eEe
Q 036073 84 LHIVGEVQFVANFCLLALP------G-IREEKLK----------------CVLSHPQALA---SSDIVQTQLGVA--REN 135 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~------g-~~~~~i~----------------~V~SHpqal~---Qc~~fl~~~~~~--~~~ 135 (241)
+...+.....-.+.|++++ + .+++|++ +++.-|.... .-.+.|+.++.. +..
T Consensus 82 l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~~ 161 (309)
T 1r9l_A 82 FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTH 161 (309)
T ss_dssp EEECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEE
T ss_pred EEEecccCCCceEEEEEchhhhhhcCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceEE
Confidence 6666654445556777655 3 2567776 6665553322 234566666664 334
Q ss_pred ccCHHH----HHHHHHhcCCCCeEEe-cCHhhHHhc----CCceeecc
Q 036073 136 IDDTAS----AAQYVASNGLRDAGVV-ASARAAEIY----GLNILADR 174 (241)
Q Consensus 136 ~~sTa~----Aa~~v~~~~~~~~aAI-~s~~aa~~y----gL~il~~~ 174 (241)
..++.. ++..+.+.+....+.+ .+.-....| +|.+|...
T Consensus 162 ~~~s~~~~~~~~~~A~~~g~~~v~~~w~P~~~~~~~~~g~dl~~Le~~ 209 (309)
T 1r9l_A 162 NQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVP 209 (309)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCS
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeecCchHhhhccccCCceEeccC
Confidence 333221 2222333334555555 444456677 89987765
No 125
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=40.77 E-value=61 Score=23.17 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=64.0
Q ss_pred EEEecHHHHHHHHHHHHhcCCc--eEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCceeEEEE
Q 036073 111 CVLSHPQALASSDIVQTQLGVA--RENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVL 188 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl 188 (241)
-|-.++......+++|.+.+.. ...+.|..+|.+.+.+. .+ ...|........-|++++..=-+......++++++
T Consensus 10 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-~~-dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~ 87 (144)
T 3kht_A 10 VVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-KY-DLIILDIGLPIANGFEVMSAVRKPGANQHTPIVIL 87 (144)
T ss_dssp EECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-CC-SEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEE
T ss_pred EEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-CC-CEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEE
Confidence 3445788888899999987765 56677777787777654 23 45666555455666666653222224457889998
Q ss_pred eeCCCCCC-----CCCCceEEEEEecCC-CchHHHHHHHHH
Q 036073 189 ARDPIMPR-----TDKPFKTSIVFTLDE-GPGVLTKALAVF 223 (241)
Q Consensus 189 ~~~~~~~~-----~~~~~ktsi~~~~~~-~pGaL~~~L~~f 223 (241)
+....... ..+. ..++. -|- .+..|...|...
T Consensus 88 s~~~~~~~~~~~~~~ga--~~~l~-Kp~~~~~~l~~~i~~~ 125 (144)
T 3kht_A 88 TDNVSDDRAKQCMAAGA--SSVVD-KSSNNVTDFYGRIYAI 125 (144)
T ss_dssp ETTCCHHHHHHHHHTTC--SEEEE-CCTTSHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHcCC--CEEEE-CCCCcHHHHHHHHHHH
Confidence 87543110 0111 12333 344 677776666554
No 126
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=40.74 E-value=25 Score=28.89 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=28.6
Q ss_pred eEEEE-EecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 202 KTSIV-FTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 202 ktsi~-~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
|.|++ -...+.||...++++.|++.|||+..|-+-
T Consensus 117 kVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstS 152 (200)
T 4go7_X 117 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS 152 (200)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred eeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEcc
Confidence 45554 345789999999999999999999988653
No 127
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=40.54 E-value=1.5e+02 Score=24.40 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCc-HHHHHH---HhhCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEE
Q 036073 13 KVRISFKGSPGS-FTEDAA---LKAYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIV 87 (241)
Q Consensus 13 ~~~ia~LGp~Gt-fS~~Aa---~~~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~ 87 (241)
..+||+...-+. +--... .+.+|+.++.. ..+..++.+.+.+|++|+|++.......+... ..|.+..+.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~-- 165 (313)
T 2h98_A 91 TLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRR---IMLHKEQLK-- 165 (313)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE---EEEEEEEEE--
T ss_pred EEEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCCCCCCeeE---EEeeeCcEE--
Confidence 567776543332 111121 22367765543 34578999999999999999853221111110 011111111
Q ss_pred EEEEEeeeeeeec-CCC-CCcCCe---eEEEecH----HHHHHHHHHHHhcCCc---eEeccCHHHHHHHHHhcCCCCeE
Q 036073 88 GEVQFVANFCLLA-LPG-IREEKL---KCVLSHP----QALASSDIVQTQLGVA---RENIDDTASAAQYVASNGLRDAG 155 (241)
Q Consensus 88 ~E~~l~I~~~L~~-~~g-~~~~~i---~~V~SHp----qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~a 155 (241)
+..+-.|-|.. ... .+++|+ ..|.-.+ ....+..+|+.+.+.. ...++|......++..+ ...
T Consensus 166 --~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (313)
T 2h98_A 166 --LAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAG---EGV 240 (313)
T ss_dssp --EEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCcccccCCCCcCHHHHcCCCEEEecCCCCchHHHHHHHHHHHcCCCCCceEEeCCHHHHHHHHHcC---CcE
Confidence 12233344443 322 344444 3454222 2234456677765542 34566666666777654 346
Q ss_pred EecCHhhHH
Q 036073 156 VVASARAAE 164 (241)
Q Consensus 156 AI~s~~aa~ 164 (241)
++.+...++
T Consensus 241 a~lp~~~~~ 249 (313)
T 2h98_A 241 CIVPASAMD 249 (313)
T ss_dssp EEEEGGGGG
T ss_pred EEeehhhhh
Confidence 666665543
No 128
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=40.46 E-value=24 Score=24.81 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=63.7
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|=.++......+++|++.+.....+.|..+|.+.+.+.. ++ ..|........-|++++.. |... ....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 9 VEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-YD-AVFIDLNLPDTSGLALVKQ-LRALPMEKTSKFVAVSG 85 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC-CS-EEEEESBCSSSBHHHHHHH-HHHSCCSSCCEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC-CC-EEEEeCCCCCCCHHHHHHH-HHhhhccCCCCEEEEEC
Confidence 345777888889999888887777888888888887653 43 4554433334445555443 3322 356788888887
Q ss_pred CCCCCCCCC-CceEEEEEecCCCchHHHHHHHHHHH
Q 036073 191 DPIMPRTDK-PFKTSIVFTLDEGPGVLTKALAVFAL 225 (241)
Q Consensus 191 ~~~~~~~~~-~~ktsi~~~~~~~pGaL~~~L~~fa~ 225 (241)
......... ..-..-++.-|-.+..|.+.+.....
T Consensus 86 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 86 FAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp C-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 643221000 00001133335567777777766543
No 129
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=40.34 E-value=1.4e+02 Score=23.72 Aligned_cols=114 Identities=9% Similarity=-0.011 Sum_probs=60.7
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCee-
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPG-----IREEKLK- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g-----~~~~~i~- 110 (241)
.++++. ++.++++++.+|++|+++-++-.+-+. +..+... +-+......++.+++ .+++|++
T Consensus 70 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r----------~~~~~fs-~p~~~~~~~~~~~~~~~~~i~~~~dL~g 137 (259)
T 4dz1_A 70 LNITEY-AWDGMLGAVASGQADVAFSGISITDKR----------KKVIDFS-EPYYINSFYLVSMANHKITLNNLNELNK 137 (259)
T ss_dssp EEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHH----------HTTEEEC-CCSEEEEEEEEEETTSCCCCCSGGGGGG
T ss_pred EEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHH----------hhccccc-cchhhCceEEEEEcCCCCCCCCHHHhCC
Confidence 577787 899999999999999987544322111 0111110 011122233444322 1334442
Q ss_pred -EEEecHH--HHHHHHHHHHhcC----CceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 111 -CVLSHPQ--ALASSDIVQTQLG----VARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 111 -~V~SHpq--al~Qc~~fl~~~~----~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
+|....- ....-++++...+ .+.+.+.|..++.+.+..+ +-.|++.....+.
T Consensus 138 ~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 196 (259)
T 4dz1_A 138 YSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNG--NLDLAFIEEPVYF 196 (259)
T ss_dssp SCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred CEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 3332221 1122222333323 5677888999999998876 3457777766543
No 130
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=39.69 E-value=32 Score=24.23 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=50.2
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|=.+|......+.+|++.+.+...+.|..+|.+.+.+. .+ ...|.--..-..-|++++.. +... ....+.+++++.
T Consensus 8 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-~~-dlvllD~~~p~~~g~~~~~~-l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 8 VDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-TP-DLIVLXIMMPVMDGFTVLKK-LQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-CC-SEEEECSCCSSSCHHHHHHH-HHTSTTTTTSCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-CC-CEEEEeccCCCCcHHHHHHH-HHhcccccCCCEEEEec
Confidence 34577788888899988888888778888888877654 23 35555443334456665543 3322 334578888876
Q ss_pred CC
Q 036073 191 DP 192 (241)
Q Consensus 191 ~~ 192 (241)
..
T Consensus 85 ~~ 86 (122)
T 3gl9_A 85 KG 86 (122)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=39.10 E-value=50 Score=23.14 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=62.1
Q ss_pred eeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCceeEEEE
Q 036073 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVL 188 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl 188 (241)
|=-|=.++......+++|.+.+.....+.|..+|.+.+.+. .+ ...|.........|++++.. +... ...+.++++
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~-dlvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~ 85 (130)
T 3eod_A 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TP-DLMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVI 85 (130)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC-CC-SEEEECCC-----CHHHHHH-HHHT-TCCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC-CC-CEEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEE
Confidence 33455677788888999998888877778888888877654 23 45665555455667776653 3322 235788888
Q ss_pred eeCCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHHH
Q 036073 189 ARDPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFAL 225 (241)
Q Consensus 189 ~~~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa~ 225 (241)
+....... ..+ -..++..+-+.+..|..++...-.
T Consensus 86 t~~~~~~~~~~~~~~g--~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 86 SATENMADIAKALRLG--VEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp ECCCCHHHHHHHHHHC--CSEEEESCC---CHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcC--CCEEEeCCCCcHHHHHHHHHHHhc
Confidence 76543110 001 112333333367778877776543
No 132
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=38.40 E-value=46 Score=30.70 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=45.7
Q ss_pred hHHhcCCceeecccCCCCCCceeEEEEeeCCCC--CCC---CCCceEEEEEe---cCCCchHHHHHHHHHHHCCceeeee
Q 036073 162 AAEIYGLNILADRIQDDPDNITRFLVLARDPIM--PRT---DKPFKTSIVFT---LDEGPGVLTKALAVFALREINLTKV 233 (241)
Q Consensus 162 aa~~ygL~il~~~I~d~~~N~TRF~vl~~~~~~--~~~---~~~~ktsi~~~---~~~~pGaL~~~L~~fa~~~iNLt~I 233 (241)
-|..+|..+.-.+..+...--|.|.--...... +-. ...+-+.|.+. .++.||.+.++++.|++++||.-.|
T Consensus 253 ~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i 332 (446)
T 3tvi_A 253 PVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM 332 (446)
T ss_dssp HHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB
T ss_pred HHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE
Confidence 355688988887776544444765411100011 001 11123334343 3578999999999999999999888
Q ss_pred eeec
Q 036073 234 FVAR 237 (241)
Q Consensus 234 eSRP 237 (241)
.+-.
T Consensus 333 ~~~~ 336 (446)
T 3tvi_A 333 PSGV 336 (446)
T ss_dssp CEET
T ss_pred ecCC
Confidence 6543
No 133
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=37.80 E-value=25 Score=25.17 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=65.1
Q ss_pred EEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEe
Q 036073 111 CVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLA 189 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~ 189 (241)
-|=.++......+++|.+.+.....+.|..+|.+.+.+.. + ...|........-|++++.. |... ....+.+++++
T Consensus 11 ivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~-~-dlvi~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 11 ICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-Y-AAMTVDLNLPDQDGVSLIRA-LRRDSRTRDLAIVVVS 87 (140)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC-C-SEEEECSCCSSSCHHHHHHH-HHTSGGGTTCEEEEEC
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC-C-CEEEEeCCCCCCCHHHHHHH-HHhCcccCCCCEEEEe
Confidence 3445778888889999988888777888888888887653 3 35555444344455555543 3332 34568899887
Q ss_pred eCCCCCC---CCCCceEEEEEecCCCchHHHHHHHHHHH
Q 036073 190 RDPIMPR---TDKPFKTSIVFTLDEGPGVLTKALAVFAL 225 (241)
Q Consensus 190 ~~~~~~~---~~~~~ktsi~~~~~~~pGaL~~~L~~fa~ 225 (241)
....... .....-..=++.-|-.+..|...|...-+
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 88 ANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp TTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 6531100 00000111223335567777777765543
No 134
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=37.54 E-value=37 Score=30.82 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=27.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFV 235 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeS 235 (241)
...|++.=.|+||.+.++-+.|+++|||+.....
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~ 364 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYL 364 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhc
Confidence 3456666679999999999999999999976543
No 135
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=36.89 E-value=24 Score=30.88 Aligned_cols=176 Identities=9% Similarity=-0.075 Sum_probs=101.8
Q ss_pred CCCCCccEEEEeCCCCcHHHHHHHhhC--------CCCce--eec---CCHHHHHHHHHc------CCcceEEEeeeccc
Q 036073 8 PNDGTKVRISFKGSPGSFTEDAALKAY--------PNCET--IPC---DEFEEAFKAVEL------WLAEKAILPIENSS 68 (241)
Q Consensus 8 ~~~~~~~~ia~LGp~GtfS~~Aa~~~~--------~~~~~--~~~---~s~~~v~~av~~------g~~d~gVvPiENS~ 68 (241)
.......|++..-|+|+..+.++.++. +..++ .|- -+-.+++++|.. |.+|.+++..-+ .
T Consensus 6 aa~~~~lk~a~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~p~g~Lg~~~e~~~~v~~~~~~~~G~id~~~~~~~~-~ 84 (328)
T 3u65_B 6 AKEKVVLKIASIAPARSIWETELKKLSAEWSEITGGLVSMKFYDMSSLGGEREGIRKLKSSRPGQAAPLDGAVFSCLG-L 84 (328)
T ss_dssp ---CEEEEEEECSCTTSHHHHHHHHHHHHHHHHTTTCEEEEEEEHHHHTCHHHHHHHTSCSSTTSCCSCSEEEECHHH-H
T ss_pred cccceEEEEeccCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCcCCHHHHHHHHhhhccCCCCceeEEEeccHh-h
Confidence 344556899999999999998887653 12333 332 246899999999 999999874210 0
Q ss_pred ccceec-------------c---------------ccccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHH
Q 036073 69 GGSIHH-------------N---------------YDLLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQ 117 (241)
Q Consensus 69 ~G~V~~-------------t---------------~d~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpq 117 (241)
.|.+.+ . .+.+.+.++++.+-......+. ..++. .+++|++ +|...+.
T Consensus 85 ~~~~P~~~~~v~~lPflf~~~~~~~~~~~~~~~~l~~~~~~~g~~~L~~~~~G~r~~-~s~kpI~s~~DlkGlKiR~~~~ 163 (328)
T 3u65_B 85 SELAPDSGIYTLSVPFLIQNEKDLERVLHELREDLDRPFRAAGFRVITWTNAGWLSF-YTRAPYASLGQLKKQTIALSSL 163 (328)
T ss_dssp HHHSTTCCBGGGGSTTTSCSHHHHHHHHHHTHHHHHHHHHHTTEEEEEEEEEEEEEE-EESSCCSSHHHHHHSEEEECST
T ss_pred hhhCChhhhhheeCCeecCCHHHHHHHHHHHHHHHHHHHHHCCeEEEEeecCCceEE-EeCCCCCCHHHHCCCEEEECCC
Confidence 011110 1 1112235788887666655553 34333 3566666 5666221
Q ss_pred HHHHHHHHHHhcCCceEe--ccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCceeEEEEee
Q 036073 118 ALASSDIVQTQLGVAREN--IDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLAR 190 (241)
Q Consensus 118 al~Qc~~fl~~~~~~~~~--~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl~~ 190 (241)
.-.--.++++..|+..++ ....-.|.+. + --.++..+.....-+++.=+++.+......++-+.++-+
T Consensus 164 ~s~~~~~~~~alGa~pv~m~~~Evy~ALq~---G--vvDg~e~~~~~~~~~~~~Ev~ky~~~~~h~~~~~~~~~n 233 (328)
T 3u65_B 164 DSSVLGTCFRICGFDIKDAPNARLAPLLKA---G--SIDGFLSVHLFTWATGFYRYISYALDTKICPAVIGMLIS 233 (328)
T ss_dssp THHHHHHHHHHHTCEEEECTTCCHHHHHHH---T--SCCEEEECHHHHHHSCGGGGCCEEECSCCEEEEEEEEEE
T ss_pred CChHHHHHHHHCCCeeeecCHHHHHHHHHc---C--ccceEecCHHHHHHcchhhcCcEEEEcCccccceEEEEc
Confidence 111224577778887654 4455555442 2 235777777777777777667766665555554444433
No 136
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=36.84 E-value=1.1e+02 Score=26.07 Aligned_cols=87 Identities=9% Similarity=-0.011 Sum_probs=51.6
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc-cCCeEEEEEEEEeeeeeeecCCCC----CcCCee-
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL-RHRLHIVGEVQFVANFCLLALPGI----REEKLK- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~~~~g~----~~~~i~- 110 (241)
++++...+-.++.++|.+|++|+|+......+ .... ..++.+++-+.-.-...++.+++. +++|.+
T Consensus 40 Vei~~~~~~~~~~~al~sG~~D~g~~~~~~~~--------~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLkG 111 (342)
T 4esw_A 40 IAILEPSNPSDVTELVGSGKVDMGLKAMVGTL--------AAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKG 111 (342)
T ss_dssp EEEEEESSGGGHHHHHHHTSSSEEEEEHHHHH--------HHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGTT
T ss_pred EEEEeCCChHHHHHHHHcCCcCEEEecHHHHH--------HHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhCC
Confidence 57888999999999999999999986543221 1111 235666665544333455554331 234433
Q ss_pred -EEE-ecHHHHHHHHHHHHhcCC
Q 036073 111 -CVL-SHPQALASSDIVQTQLGV 131 (241)
Q Consensus 111 -~V~-SHpqal~Qc~~fl~~~~~ 131 (241)
+|. .........+.+|++.|+
T Consensus 112 K~ig~~~~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 112 KRIGYVGEFGKIQVDELTKHYGM 134 (342)
T ss_dssp CEEEESSSHHHHHHHHHHGGGTC
T ss_pred CEEEecCCchHHHHHHHHHHcCC
Confidence 443 223334566778887654
No 137
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=36.41 E-value=43 Score=28.04 Aligned_cols=137 Identities=11% Similarity=0.099 Sum_probs=70.6
Q ss_pred Cceee-cCCHHHHHHHHHcCCcceEEEeeec---ccccc--e-----eccccccc-----cCCeEEEEEEEEeeeeeeec
Q 036073 37 CETIP-CDEFEEAFKAVELWLAEKAILPIEN---SSGGS--I-----HHNYDLLL-----RHRLHIVGEVQFVANFCLLA 100 (241)
Q Consensus 37 ~~~~~-~~s~~~v~~av~~g~~d~gVvPiEN---S~~G~--V-----~~t~d~L~-----~~~l~I~~E~~l~I~~~L~~ 100 (241)
+++++ ..+-..+++++.+|++|+++-=.-+ +..+. . .+.++.+. +.++.+++-....-.+.|++
T Consensus 36 Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V 115 (275)
T 1sw5_A 36 AEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAV 115 (275)
T ss_dssp EEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEE
T ss_pred EEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEEE
Confidence 45665 5677889999999999988510000 01111 0 01223222 23788888876665678887
Q ss_pred CC------CC-CcCCee------EEEecHHHHH---HHHHHHHhcCCc--eEeccCHHHHHHHHHhcCCCCeEEec-CHh
Q 036073 101 LP------GI-REEKLK------CVLSHPQALA---SSDIVQTQLGVA--RENIDDTASAAQYVASNGLRDAGVVA-SAR 161 (241)
Q Consensus 101 ~~------g~-~~~~i~------~V~SHpqal~---Qc~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~aAI~-s~~ 161 (241)
++ |. +++|++ ++-+-+.-.. .-..+++.+++. .+...+.+.....+.++ ....+.+- +..
T Consensus 116 ~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~~ 194 (275)
T 1sw5_A 116 RADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNK-QVDVIPAYTTDS 194 (275)
T ss_dssp EHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTT-SCSEEEEETTCH
T ss_pred eHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcC-CCeEEEEeCCCc
Confidence 64 32 344443 2222222110 112266666653 23333445445555544 34555553 333
Q ss_pred hHHhcCCceeecc
Q 036073 162 AAEIYGLNILADR 174 (241)
Q Consensus 162 aa~~ygL~il~~~ 174 (241)
....|+|++|..+
T Consensus 195 ~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 195 RVDLFNLKILEDD 207 (275)
T ss_dssp HHHHTTEEECBCT
T ss_pred chhcCCeEEccCC
Confidence 4456899888754
No 138
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=36.37 E-value=46 Score=25.56 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=33.5
Q ss_pred EEEEeCCCCcHHHHHHHhhC---CC-------CceeecCCHHHHHHHHHcCCcceEEEee
Q 036073 15 RISFKGSPGSFTEDAALKAY---PN-------CETIPCDEFEEAFKAVELWLAEKAILPI 64 (241)
Q Consensus 15 ~ia~LGp~GtfS~~Aa~~~~---~~-------~~~~~~~s~~~v~~av~~g~~d~gVvPi 64 (241)
+++...|.++-...++..++ +- ...+...+...+.+.|.+|+++.|+++.
T Consensus 106 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~i~~~~~ 165 (231)
T 1atg_A 106 HIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVAL 165 (231)
T ss_dssp CEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEG
T ss_pred EEEecCCCCCchhHHHHHHHHHCCCcccccccceEEecCCHHHHHHHHHcCCCCEEEEEH
Confidence 78888776443332222222 10 1345678999999999999999999984
No 139
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.98 E-value=57 Score=23.07 Aligned_cols=111 Identities=10% Similarity=0.030 Sum_probs=66.2
Q ss_pred EEEecHHHHHHHHHHHHh-cCCc-eEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEE
Q 036073 111 CVLSHPQALASSDIVQTQ-LGVA-RENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLV 187 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~-~~~~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~v 187 (241)
-|=.++......+++|.+ .+.+ ...+.|..+|.+.+.+.. ++ ..|........-|++++. .|... ....+.+++
T Consensus 13 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~-~d-lii~d~~l~~~~g~~~~~-~l~~~~~~~~~~ii~ 89 (143)
T 3cnb_A 13 IIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK-PD-VVMLDLMMVGMDGFSICH-RIKSTPATANIIVIA 89 (143)
T ss_dssp EECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC-CS-EEEEETTCTTSCHHHHHH-HHHTSTTTTTSEEEE
T ss_pred EEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC-CC-EEEEecccCCCcHHHHHH-HHHhCccccCCcEEE
Confidence 344578888889999998 7888 677778788888777653 43 455443333344555443 34332 345688998
Q ss_pred EeeCCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHHHCC
Q 036073 188 LARDPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFALRE 227 (241)
Q Consensus 188 l~~~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~ 227 (241)
++....... ..+. .. ++.-|-.+..|...+....++.
T Consensus 90 ~s~~~~~~~~~~~~~~g~--~~-~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 90 MTGALTDDNVSRIVALGA--ET-CFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp EESSCCHHHHHHHHHTTC--SE-EEESSCCHHHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHhcCC--cE-EEeCCCCHHHHHHHHHHHHHhh
Confidence 887643110 0111 12 2333556778888887665543
No 140
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=35.71 E-value=53 Score=27.29 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=38.9
Q ss_pred cEEEEeCC----CCcHHHHHHHhhC--C--CCceeecCCHHHHHHHHHcCCcceEEEeee
Q 036073 14 VRISFKGS----PGSFTEDAALKAY--P--NCETIPCDEFEEAFKAVELWLAEKAILPIE 65 (241)
Q Consensus 14 ~~ia~LGp----~GtfS~~Aa~~~~--~--~~~~~~~~s~~~v~~av~~g~~d~gVvPiE 65 (241)
.||++--| .|.|..++..++- . ...++...+..+++..|.+|++|+|++...
T Consensus 133 ~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s 192 (253)
T 3gzg_A 133 GRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGS 192 (253)
T ss_dssp CCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred CEEEEeCCCCCchHHHHHHHHHHcCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhh
Confidence 68998766 5777766655431 0 124678899999999999999999998643
No 141
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=35.52 E-value=1.8e+02 Score=23.60 Aligned_cols=122 Identities=11% Similarity=0.004 Sum_probs=61.6
Q ss_pred hCCCCceeec-CCHHHHHHHHHcCCcceEEEeeecc--cccceeccccccccCCeEEEEEEEEeeeeeeecCCC-CCcCC
Q 036073 33 AYPNCETIPC-DEFEEAFKAVELWLAEKAILPIENS--SGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPG-IREEK 108 (241)
Q Consensus 33 ~~~~~~~~~~-~s~~~v~~av~~g~~d~gVvPiENS--~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~ 108 (241)
.+|+.++... .+-+++.+.+.+|++|+|+...... ..+... ..|.+..+.++ .+-.|-|..... .++.+
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~~---~~L~~~~~~~v----~~~~hpla~~~~~~dL~~ 189 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEA---QPLYVSDVVIV----GQRQHPMANATRLAELQE 189 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEE---EEEEECCEEEE----EETTCTTTTCCSGGGGTT
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCeeE---EEeecCcEEEE----EcCCCCCCCCCCHHHHhC
Confidence 3677655433 3456788999999999999864321 111111 11122222222 122232221110 01233
Q ss_pred eeEEEec-HHH-HHHHHHHHHhcCC-c--e-EeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 109 LKCVLSH-PQA-LASSDIVQTQLGV-A--R-ENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 109 i~~V~SH-pqa-l~Qc~~fl~~~~~-~--~-~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
...|... ... -....+|+.+.+. . . ..++|.......++.+ ...|+.+...++
T Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 190 CRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp SEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred CCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 3444332 221 2456778877665 2 2 4456666666666654 347788887765
No 142
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=34.90 E-value=1.8e+02 Score=23.49 Aligned_cols=112 Identities=8% Similarity=0.030 Sum_probs=61.8
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--E
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--C 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~ 111 (241)
.++++.+ ..++++++.+|++|+++-++.- +-+ ....+... .-+......++++++. +++|++ +
T Consensus 88 ~~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~--r~~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~~ 155 (292)
T 1xt8_A 88 VQFVLVE-AANRVEFLKSNKVDIILANFTQ--------TPQ--RAEQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDKT 155 (292)
T ss_dssp EEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHH--HHTTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTSE
T ss_pred EEEEEcC-HHHHHHHHhCCCeeEEeecCCC--------Ccc--hhcceeee-ccceecceEEEEECCCCCCCHHHhCCCE
Confidence 5666664 6899999999999988533211 100 01111111 1122334556665542 344442 4
Q ss_pred EEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 112 VLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
|..-.- .. ...++.+. +.+.+.+.|..++.+.+..+ +-.+++.....+.
T Consensus 156 i~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~~~~~~~~~ 206 (292)
T 1xt8_A 156 LLLNKG-TT-ADAYFTQNYPNIKTLKYDQNTETFAALMDK--RGDALSHDNTLLF 206 (292)
T ss_dssp EEEETT-SH-HHHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEeCC-Cc-HHHHHHHhCCCceEEEcCCHHHHHHHHHcC--CccEEEecHHHHH
Confidence 543222 11 13455553 56778888989999998875 3457777665544
No 143
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=34.82 E-value=44 Score=27.11 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=38.1
Q ss_pred cEEEEeCC----CCcHHHHHHHhhCC-----CCceeecCCHHHHHHHHHcCCcceEEEeee
Q 036073 14 VRISFKGS----PGSFTEDAALKAYP-----NCETIPCDEFEEAFKAVELWLAEKAILPIE 65 (241)
Q Consensus 14 ~~ia~LGp----~GtfS~~Aa~~~~~-----~~~~~~~~s~~~v~~av~~g~~d~gVvPiE 65 (241)
.||++--| .|.|..++..+. + ...++...+..+++..|.+|++|+|++...
T Consensus 117 ~~iai~~p~~~p~G~~a~~~l~~~-g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s 176 (237)
T 3r26_A 117 GRLAVGDPEHVPAGIYAKEALQKL-GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGS 176 (237)
T ss_dssp CCEEEECTTTCHHHHHHHHHHHHT-TCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred CeEEEeCCCCCChHHHHHHHHHHc-CCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEec
Confidence 58998876 567766665432 2 124677889999999999999999998643
No 144
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=34.68 E-value=39 Score=29.33 Aligned_cols=161 Identities=11% Similarity=-0.020 Sum_probs=93.2
Q ss_pred CCCCccEEEEeCCCCcHHHHHHHhhC--------CCCceeecC---CHHHHHHHHHcCCcceEEEeeec---------cc
Q 036073 9 NDGTKVRISFKGSPGSFTEDAALKAY--------PNCETIPCD---EFEEAFKAVELWLAEKAILPIEN---------SS 68 (241)
Q Consensus 9 ~~~~~~~ia~LGp~GtfS~~Aa~~~~--------~~~~~~~~~---s~~~v~~av~~g~~d~gVvPiEN---------S~ 68 (241)
......|++.-.|+|+..+.++.+|. +..++.|-. +-.+++++|..|.+|.+++..-+ -.
T Consensus 12 ~~a~~lr~a~~~~~~~~~~~~~~~fa~~Vee~s~G~i~v~p~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v~ 91 (326)
T 3fxb_A 12 EGRDTWRYAFEEAMTDVQGVYAQKFKEEIEANSDHEIQLFPYGTLGESADIMEQTQDGILQFVDQSPGFTGSLIPEAQVF 91 (326)
T ss_dssp ---CCCEEECSSCTTSHHHHHHHHHHHHHHHSSSCCCEEECTTSSCSHHHHHHHHHHTSCSEEECCHHHHTTTSGGGGGG
T ss_pred CcccEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHhCCCeeEEEecchhhhhhCcchHHh
Confidence 34567899999999999999988753 224433322 45899999999999999974211 00
Q ss_pred -----------------ccc--eecccc-ccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHH
Q 036073 69 -----------------GGS--IHHNYD-LLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIV 125 (241)
Q Consensus 69 -----------------~G~--V~~t~d-~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~f 125 (241)
.|. +.+.++ .+.+.++++.+-....-.+ +..++. .+++|++ +|..-+.. --.++
T Consensus 92 ~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~G~~~-~~~~kpI~s~~DlkGlKiR~~~~~--~~~~~ 168 (326)
T 3fxb_A 92 FVPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVA-MTTKTPVTTCSDLDEVKFRVMTNP--LLVES 168 (326)
T ss_dssp GSTTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEE-EEESSCCSSGGGSTTCEEEECSCH--HHHHH
T ss_pred cCCeecCCHHHHHHHHHcCcHHHHHHHHHHHHHcCeEEEEEecCCceE-EecCCCCCChHHhCCCEEEecCCH--HHHHH
Confidence 111 111121 2234688888877666654 333332 3566666 55554322 22457
Q ss_pred HHhcCCceEec--cCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCC
Q 036073 126 QTQLGVARENI--DDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD 177 (241)
Q Consensus 126 l~~~~~~~~~~--~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d 177 (241)
++..|+..++. ...-.|.+ .+ --.++..+.....-+++.=+++.+..
T Consensus 169 ~~alGa~pv~m~~~Evy~ALq---~G--vvDg~e~~~~~~~~~~~~Ev~ky~~~ 217 (326)
T 3fxb_A 169 YKAFGATPTPLPWGEVYGGLQ---TN--VIQGQENPTFFLYSTKIYEVTDYITY 217 (326)
T ss_dssp HHHHTSEEEECCGGGHHHHHH---TT--SCCEEEEEHHHHHHTTGGGSCSEEEE
T ss_pred HHHcCCeeeecCHHHHHHHHH---cC--CcceEecCHHHHHhccHhhhcceeEE
Confidence 77788876554 44443433 22 23466666666666666555555443
No 145
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=34.29 E-value=26 Score=30.75 Aligned_cols=121 Identities=12% Similarity=-0.060 Sum_probs=70.6
Q ss_pred CccEEEEeCCCC-cHHHHHHHhhC--------CCCceeecC-----CHHHHHHHHHcCCcceEEEeeeccc--------c
Q 036073 12 TKVRISFKGSPG-SFTEDAALKAY--------PNCETIPCD-----EFEEAFKAVELWLAEKAILPIENSS--------G 69 (241)
Q Consensus 12 ~~~~ia~LGp~G-tfS~~Aa~~~~--------~~~~~~~~~-----s~~~v~~av~~g~~d~gVvPiENS~--------~ 69 (241)
...|+++..|+| +..+.++..+. +..++..+. +-.+++++|..|.+|++++..-... -
T Consensus 32 ~~l~~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~ 111 (365)
T 2hzl_A 32 VTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALA 111 (365)
T ss_dssp CEEEEEESSCTTCTTTTHHHHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHT
T ss_pred eEEEEeccCCCCCCchhHHHHHHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccChhHhhh
Confidence 458999999998 64455554431 235555554 3589999999999999998642211 0
Q ss_pred cceecc------------------cc-ccccCCeEEEEEEEEeeeeeeecCCC-CCcCCee--EEEecHHHHHHHHHHHH
Q 036073 70 GSIHHN------------------YD-LLLRHRLHIVGEVQFVANFCLLALPG-IREEKLK--CVLSHPQALASSDIVQT 127 (241)
Q Consensus 70 G~V~~t------------------~d-~L~~~~l~I~~E~~l~I~~~L~~~~g-~~~~~i~--~V~SHpqal~Qc~~fl~ 127 (241)
+.+... ++ ++.+.++++.+-......+....+++ .+++|++ +|..-+ --.++++
T Consensus 112 ~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~~pI~s~~DLkG~KiR~~~----~~~~~~~ 187 (365)
T 2hzl_A 112 AAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVGG----FAGKVME 187 (365)
T ss_dssp TCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECCT----THHHHHH
T ss_pred hcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccCCCcccceeecCCCCChHHhCCCEEecCC----cHHHHHH
Confidence 111110 11 12345788777654444333223333 3567776 565543 2356888
Q ss_pred hcCCceEec
Q 036073 128 QLGVARENI 136 (241)
Q Consensus 128 ~~~~~~~~~ 136 (241)
..|+..++.
T Consensus 188 ~lGa~pv~~ 196 (365)
T 2hzl_A 188 RLGVVPQQI 196 (365)
T ss_dssp TTTCEEECC
T ss_pred HcCCcceec
Confidence 888876554
No 146
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=34.04 E-value=21 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=32.0
Q ss_pred cEEEEeCCCCcHHHHHHHhhCCCC--ceeec--CCHHHHHHHHHcCCcceEEEe
Q 036073 14 VRISFKGSPGSFTEDAALKAYPNC--ETIPC--DEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~~~~~--~~~~~--~s~~~v~~av~~g~~d~gVvP 63 (241)
.+||+. ..|++.+ ...+.+++. .++.+ ++.++++++|.+|++|+.+..
T Consensus 162 ~~vg~v-~~~s~~~-~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 162 FRFGTV-PNGSTER-NIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp CCEECC-TTSHHHH-HHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred ceEEEE-eCCchHH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEc
Confidence 467644 3455543 334445432 34555 899999999999999988864
No 147
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=33.46 E-value=40 Score=22.69 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=47.2
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|-.++....+.+++|+..+.....+.+..++.+.+.+.. ++ ..|.........|++++.. +... ....+.+++++.
T Consensus 7 v~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~-~d-lii~d~~~~~~~~~~~~~~-l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 7 LEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ-PI-VILMAWPPPDQSCLLLLQH-LREHQADPHPPLVLFLG 83 (119)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC-CS-EEEEECSTTCCTHHHHHHH-HHHTCCCSSCCCEEEES
T ss_pred EeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC-CC-EEEEecCCCCCCHHHHHHH-HHhccccCCCCEEEEeC
Confidence 445677788888889888888777788777887776652 33 4444332222334444332 3322 225677888876
Q ss_pred CC
Q 036073 191 DP 192 (241)
Q Consensus 191 ~~ 192 (241)
..
T Consensus 84 ~~ 85 (119)
T 2j48_A 84 EP 85 (119)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 148
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=33.34 E-value=1.6e+02 Score=22.51 Aligned_cols=121 Identities=11% Similarity=0.008 Sum_probs=60.5
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCcceEEEeeec-ccccceeccccccccCCeEEEEEEEEeeeeeeecCCCCCcCC--
Q 036073 33 AYPNCETIP-CDEFEEAFKAVELWLAEKAILPIEN-SSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEK-- 108 (241)
Q Consensus 33 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiEN-S~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~~~~-- 108 (241)
.+|+.++.. ..+..++.+.+.+|++|+|++.-.. ...+.. ...|.+..+. +.++-.|-|...+..++++
T Consensus 39 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~l~---~~~l~~~~~~----~v~~~~hpla~~~~i~~~dL~ 111 (228)
T 2fyi_A 39 LFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLV---AFPWFRWHHS----LLVPHDHPLTQISPLTLESIA 111 (228)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEE---EEEEEEECEE----EEEETTCGGGTSSSCCHHHHT
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCCCCce---EEEeeecceE----EEecCCCCccccCccCHHHHc
Confidence 467765433 3467899999999999999974211 011111 0111122221 1233445444333333333
Q ss_pred -eeEEEecH-HH-HHHHHHHHHhcCC--c-eEeccCHHHHHHHHHhcCCCCeEEecCHhhH
Q 036073 109 -LKCVLSHP-QA-LASSDIVQTQLGV--A-RENIDDTASAAQYVASNGLRDAGVVASARAA 163 (241)
Q Consensus 109 -i~~V~SHp-qa-l~Qc~~fl~~~~~--~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa 163 (241)
-..|...+ .. ..+..+++.+.+. . ...++|......+++.+ ...++.+..++
T Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G---~Gia~lp~~~~ 169 (228)
T 2fyi_A 112 KWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALG---LGIGLVAEQSS 169 (228)
T ss_dssp TSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT---SCEEEEEGGGG
T ss_pred CCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhC---CCEEEeehHhh
Confidence 33443222 11 2345566666554 2 24566666666777764 33566665543
No 149
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=32.97 E-value=64 Score=30.24 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=43.5
Q ss_pred HhcCCceeecccCCCCCCceeEEEEeeCC-CCCC----CCCCceEEEEEe---cCCCchHHHHHHHHHHHCCceeeeeee
Q 036073 164 EIYGLNILADRIQDDPDNITRFLVLARDP-IMPR----TDKPFKTSIVFT---LDEGPGVLTKALAVFALREINLTKVFV 235 (241)
Q Consensus 164 ~~ygL~il~~~I~d~~~N~TRF~vl~~~~-~~~~----~~~~~ktsi~~~---~~~~pGaL~~~L~~fa~~~iNLt~IeS 235 (241)
..+|..+...+-.+...-=|.|. .... ..+. ....+-+.|.+. .+++||-+.++++.|+++|||.-.|.|
T Consensus 300 ~~~gIpv~I~n~~~p~~~GT~I~--~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s 377 (510)
T 2cdq_A 300 REGEIPVRVKNSYNPKAPGTIIT--KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 377 (510)
T ss_dssp HHHTCCEEEEETTSTTSCCEEEE--SCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHCCCeEEEEccCcCCCCCeEEe--ccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe
Confidence 45688877776655444456664 1111 1100 011233444443 467899999999999999999998855
No 150
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=32.39 E-value=1.9e+02 Score=23.10 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=62.7
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--E
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--C 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~ 111 (241)
.++++. ++.+++.++.+|++|+++-.+ ..+-+. ...+.. ..-+......++++++. +++|++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~--------~~t~~r--~~~~~~-s~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGST--------TNNVER--QKQAAF-SDTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSC--------BCCHHH--HTTCEE-EEEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEeccc--------cCCcch--hhcccc-cceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 456776 458899999999999875321 111111 112222 12334445567776653 234432 4
Q ss_pred EEecHH--HHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 112 VLSHPQ--ALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 112 V~SHpq--al~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
|..-.- ......+++... +.+.+.+.|..++.+.+..+ +-.+++.+...+.
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~i~~~~~~~ 187 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESG--RAVAFMMDDALLA 187 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcC--CeeEEEeChHHHH
Confidence 432211 112223333332 56778888999999998875 3457777665544
No 151
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=32.39 E-value=86 Score=26.70 Aligned_cols=110 Identities=9% Similarity=0.104 Sum_probs=66.8
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCC--C--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc---cCCe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYP--N--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL---RHRL 84 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~--~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---~~~l 84 (241)
...|||+.+-+-+--++.+..++. + .+++.+.+..+.-.|+.+|++|....=.. ..++... ..+|
T Consensus 11 ~~ikVG~~~~p~~~il~~v~~~~~k~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyL~~~~k~~g~~l 82 (252)
T 4ib2_A 11 KTIKVAASATPHAEILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHV--------PYLESFNEEKGTHL 82 (252)
T ss_dssp HEEEEEECTTTHHHHHHHHHHHHHHTTCEEEEEECSSSSHHHHHHHTTSSSEEEEEEH--------HHHHHHHHHHCCCE
T ss_pred ceEEEEEcCCChHHHHHHHHHHHHhcCCeEEEEEecChhhHHHHHHcCCcCeeecCCH--------HHHHHHHHHCCCCE
Confidence 357899984322222234444542 2 57899999999999999999999764322 1122222 2467
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCee---EEEecHHHHHHHHH--HHHhcC
Q 036073 85 HIVGEVQFVANFCLLALPGIREEKLK---CVLSHPQALASSDI--VQTQLG 130 (241)
Q Consensus 85 ~I~~E~~l~I~~~L~~~~g~~~~~i~---~V~SHpqal~Qc~~--fl~~~~ 130 (241)
..++.+.+.- ..|.+.+=.+++|++ +|.----+-.|-|. +|.+.|
T Consensus 83 v~v~~~~~~p-~glyS~kiksl~dLk~Ga~IAipnd~sN~~RaL~lL~~aG 132 (252)
T 4ib2_A 83 VDAGDIHYEP-FGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNG 132 (252)
T ss_dssp EEEEEEEECC-CEEEESSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeeccccc-eEeecCCcCCHHHcCCCCEEEeeCCCCHHHHHHHHHHHCC
Confidence 7777654443 577776666788887 66544444455544 444444
No 152
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=32.31 E-value=37 Score=24.36 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=64.3
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|=.++......+.+|++.+.+...+.|..+|.+.+.+.. + ...|.....-..-|++++.. |... ....+.+++++.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~-~-dlvl~D~~lp~~~g~~~~~~-lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 10 VDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL-P-DALICDVLLPGIDGYTLCKR-VRQHPLTKTLPILMLTA 86 (136)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC-C-SEEEEESCCSSSCHHHHHHH-HHHSGGGTTCCEEEEEC
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC-C-CEEEEeCCCCCCCHHHHHHH-HHcCCCcCCccEEEEec
Confidence 445777788888999888888777888888888877642 3 35554433334455655543 3322 234678888887
Q ss_pred CCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHHHCC
Q 036073 191 DPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFALRE 227 (241)
Q Consensus 191 ~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~ 227 (241)
...... ..+. .- ++.=|-.+..|...+...-.+.
T Consensus 87 ~~~~~~~~~~~~~ga--~~-~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 87 QGDISAKIAGFEAGA--ND-YLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp TTCHHHHHHHHHHTC--SE-EEETTCCHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHhcCc--ce-EEeCCCCHHHHHHHHHHHHhcc
Confidence 543110 0011 11 2233556777877777665443
No 153
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=31.54 E-value=65 Score=22.67 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=67.3
Q ss_pred eeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCCCCceeEEEE
Q 036073 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVL 188 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl 188 (241)
|=-|=.++......+++|++.+.+...+.+..+|...+.+... -...|........-|++++. .|.......++++++
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~-~dlvi~D~~l~~~~g~~~~~-~l~~~~~~~~~ii~~ 87 (136)
T 3hdv_A 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKR-IGLMITDLRMQPESGLDLIR-TIRASERAALSIIVV 87 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTT-EEEEEECSCCSSSCHHHHHH-HHHTSTTTTCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCC-CcEEEEeccCCCCCHHHHHH-HHHhcCCCCCCEEEE
Confidence 3344457888888899999888888888888888888876532 24555544433444555553 343332456888888
Q ss_pred eeCCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHHHC
Q 036073 189 ARDPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFALR 226 (241)
Q Consensus 189 ~~~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~ 226 (241)
+....... ..+ ..-++.-|-.+..|...|+.....
T Consensus 88 s~~~~~~~~~~~~~~g---~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 88 SGDTDVEEAVDVMHLG---VVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp ESSCCHHHHHHHHHTT---CSEEEESSCCHHHHHHHHHHHHC-
T ss_pred eCCCChHHHHHHHhCC---cceEEeCCCCHHHHHHHHHHHhcC
Confidence 87643100 001 111233355677888877766443
No 154
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=31.53 E-value=32 Score=31.23 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=25.1
Q ss_pred ecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 208 TLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 208 ~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
...+.||.+.++++.|++.|||+..|-+.
T Consensus 353 gm~~~~Gv~a~~f~aL~~~~InI~~is~S 381 (421)
T 3ab4_A 353 GMKSHPGVTAEFMEALRDVNVNIELISTS 381 (421)
T ss_dssp GGTSCTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CcccCccHHHHHHHHHHHCCCCEEEEEcC
Confidence 34789999999999999999999888543
No 155
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=31.04 E-value=81 Score=24.09 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCccEEEEeCCCCcHH-HHHH---HhhCCCCceee-cCCHHHHHHHHHcCCcceEEEe
Q 036073 11 GTKVRISFKGSPGSFT-EDAA---LKAYPNCETIP-CDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS-~~Aa---~~~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvP 63 (241)
.+..+||+...-+.+- -.+. ++.+|+.++.. ..+-.++.+++.+|++|+|++.
T Consensus 4 ~g~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEeccchhhhhhhHHHHHHHHHCCCeEEEEEECChHHHHHHHHcCCeeEEEec
Confidence 3456788765443321 1111 23467765543 3577899999999999999985
No 156
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=31.01 E-value=63 Score=29.78 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=41.5
Q ss_pred HhcCCceeecccCCCCCCceeEEEEeeCCCCC-CC---CCCceEEEEEe---cCCCchHHHHHHHHHHHCCceeeeee
Q 036073 164 EIYGLNILADRIQDDPDNITRFLVLARDPIMP-RT---DKPFKTSIVFT---LDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 164 ~~ygL~il~~~I~d~~~N~TRF~vl~~~~~~~-~~---~~~~ktsi~~~---~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
..+|..+...+-.+....=|.|.-- .+...+ -. ...+-+.|.+. .+++||.+.++++.|+++|||.-.|.
T Consensus 277 ~~~gi~v~I~~~~~~~~~GT~i~~~-~~~~~~~v~gIa~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~Is 353 (473)
T 3c1m_A 277 MEKGIPILVKNTFEPESEGTLITND-MEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILIS 353 (473)
T ss_dssp HHHTCCEEEEETTSTTSCCEEEESC-CCCCTTSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCEEEEEecCCCCCceEEEecc-ccccccccchhhccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 3467776665554434445666421 110111 00 11223344332 47889999999999999999999886
No 157
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.73 E-value=1.4e+02 Score=20.94 Aligned_cols=111 Identities=10% Similarity=0.002 Sum_probs=63.9
Q ss_pred eEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCC-CCCCceeEEEE
Q 036073 110 KCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD-DPDNITRFLVL 188 (241)
Q Consensus 110 ~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d-~~~N~TRF~vl 188 (241)
=-|=.++......+++|.+.+.+...+.|..+|.+.+.+.. + ...|.........|++++.. +.. .....+.++++
T Consensus 11 Livdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlii~d~~l~~~~g~~~~~~-l~~~~~~~~~pii~~ 87 (142)
T 3cg4_A 11 MIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF-S-GVVLLDIMMPGMDGWDTIRA-ILDNSLEQGIAIVML 87 (142)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC-C-EEEEEESCCSSSCHHHHHHH-HHHTTCCTTEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC-C-CEEEEeCCCCCCCHHHHHHH-HHhhcccCCCCEEEE
Confidence 33445777788888899888887777788788888776642 3 45554433333445554432 332 23456889999
Q ss_pred eeCCCCCCCCCC--ceEEEEEecCCCchHHHHHHHHH
Q 036073 189 ARDPIMPRTDKP--FKTSIVFTLDEGPGVLTKALAVF 223 (241)
Q Consensus 189 ~~~~~~~~~~~~--~ktsi~~~~~~~pGaL~~~L~~f 223 (241)
+........... .-..-++.-|-.+..|...|...
T Consensus 88 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 876432211111 11222333355667777766654
No 158
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=29.40 E-value=2.4e+02 Score=23.23 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=75.4
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee---
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--- 110 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--- 110 (241)
++.++. +-.-+++++.+|++|+.+--.-+++. .+.++. .+.++...+...-.-.+.|++++.. +++|++
T Consensus 32 Ve~~~~-~~~~~~~al~~G~iD~~~e~w~~~~~---~~~~~~-~~~~l~~l~~~~~~~~~~l~Vp~~~~i~si~DL~~~~ 106 (256)
T 3l6g_A 32 VKTTAL-DNAVAWQTVANGQADGMVSAWLPNTH---KTQWQK-YGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQA 106 (256)
T ss_dssp EEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTT---HHHHHH-HGGGEEEEEEEEEEEEEEEEEETTSCCCBGGGCSSGG
T ss_pred eEEEEC-ChHHHHHHHHCCCCeEEEcccCCccc---HHHHHH-hCCceEEccccCCCceEEEEECCccCCCCHHHHHHhc
Confidence 466776 45778999999999987643222211 122222 1345777777766567888887754 345553
Q ss_pred --EEEecHHHHH---HHHHHHHhc-CCc-eEeccCHHHH----HHHHHhcCCCCeEEe-cCHhhHHhcCCceeec
Q 036073 111 --CVLSHPQALA---SSDIVQTQL-GVA-RENIDDTASA----AQYVASNGLRDAGVV-ASARAAEIYGLNILAD 173 (241)
Q Consensus 111 --~V~SHpqal~---Qc~~fl~~~-~~~-~~~~~sTa~A----a~~v~~~~~~~~aAI-~s~~aa~~ygL~il~~ 173 (241)
+++.=|.... ...+.|+.+ +.. +..+.++..+ .+.+.+.+......+ .+.-.-..|+|++|+.
T Consensus 107 ~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 181 (256)
T 3l6g_A 107 NKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNKYDLKYLAD 181 (256)
T ss_dssp GGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred CCeEEecCCCchhhHHHHHHHHhcCCCCCeEEecCCHHHHHHHHHHHHHCCCCEEEEeecCchhhhhcCeEEecC
Confidence 6666665433 223455566 654 3333332221 222333334444444 6666777899999863
No 159
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=28.99 E-value=91 Score=23.16 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=43.9
Q ss_pred cEEEEeCCCCcHHHHHHHhh-CCCCceeecCCHHHH---HHHHHcCCcceEEEeeecccccceeccccccccCCe
Q 036073 14 VRISFKGSPGSFTEDAALKA-YPNCETIPCDEFEEA---FKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRL 84 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~-~~~~~~~~~~s~~~v---~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l 84 (241)
+||+..|-+ ..+.-| ..+.+..++.+-+++ |+.+.++ |+|||=|...+.-.+.+.+|-+.+..+
T Consensus 3 mKiaVIGD~-----Dtv~GFrLaGie~~~v~~~ee~~~~~~~l~~~--digIIlIte~ia~~i~~~i~~~~~~~~ 70 (115)
T 3aon_B 3 YKIGVVGDK-----DSVSPFRLFGFDVQHGTTKTEIRKTIDEMAKN--EYGVIYITEQCANLVPETIERYKGQLT 70 (115)
T ss_dssp EEEEEESCH-----HHHGGGGGGTCEEECCCSHHHHHHHHHHHHHT--TEEEEEEEHHHHTTCHHHHHHHHTSSS
T ss_pred eEEEEEECH-----HHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhc--CceEEEEeHHHHHHhHHHHHHHhCCCC
Confidence 689999873 222222 234566677776655 6666654 999999999999899888887654333
No 160
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=28.90 E-value=49 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=36.2
Q ss_pred cEEEEeCCCCcHHHHHHHhhCC--CC---ce--eecCCHHHHHHHHHcCCcceEEEe
Q 036073 14 VRISFKGSPGSFTEDAALKAYP--NC---ET--IPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~~~--~~---~~--~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
.+|++ |+.||-+|..+..++. +. ++ +++.+..+++.++.+|++|.++..
T Consensus 132 ~~i~~-~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 132 KRVVV-GDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp SEEEC-CCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred CEeec-CCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 47775 4579988887766542 22 12 367789999999999999999864
No 161
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=28.73 E-value=66 Score=27.34 Aligned_cols=50 Identities=6% Similarity=-0.225 Sum_probs=34.2
Q ss_pred CccEEEEeCCCCcHHHHHHHhhC---C----CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAY---P----NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~---~----~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...|||+.. .|+.++...+.++ + +.+++.. +..+++.++.+|++|.++++
T Consensus 153 kGk~i~v~~-~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~ 209 (341)
T 3un6_A 153 DDYHFGIPH-RYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVA 209 (341)
T ss_dssp SCEEEEESC-SSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEE
T ss_pred CCCEEEECC-CCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEec
Confidence 567899764 4555554443322 1 3466776 57889999999999988875
No 162
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=28.64 E-value=70 Score=27.54 Aligned_cols=56 Identities=4% Similarity=0.081 Sum_probs=36.6
Q ss_pred CCCCCCccEEEEeCCCCcHHHHHH----HhhC----C-CCceeecCCHHHHHHHHHcCCcceEEE
Q 036073 7 TPNDGTKVRISFKGSPGSFTEDAA----LKAY----P-NCETIPCDEFEEAFKAVELWLAEKAIL 62 (241)
Q Consensus 7 ~~~~~~~~~ia~LGp~GtfS~~Aa----~~~~----~-~~~~~~~~s~~~v~~av~~g~~d~gVv 62 (241)
|.+.....+||++.-...+.-... .+++ + .+++++..++.++++++.+|++|++++
T Consensus 9 ~~~~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~ve~~~~~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 9 SEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp -----CCEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSCEEEECCSSHHHHHHHHHTTSCSEEEC
T ss_pred chhcCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCCCcEEEE
Confidence 345566789999966655433221 1111 2 357778899999999999999999985
No 163
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=28.60 E-value=1.3e+02 Score=20.75 Aligned_cols=53 Identities=8% Similarity=0.018 Sum_probs=40.4
Q ss_pred CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEee
Q 036073 12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPI 64 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPi 64 (241)
.+++|.+......+.+.-...+-.+.+...+.+.+++++.+.+...|+.++=+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLSGEFDCTTAADGASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCSEEEECS
T ss_pred CCCEEEEEcCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHhcCCCCEEEEeC
Confidence 35788899888777766554444557888999999999999999888877744
No 164
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=27.73 E-value=86 Score=21.93 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=62.2
Q ss_pred EEEecHHHHHHHHHHHHhcCCc-eEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCC-CCCCceeEEEE
Q 036073 111 CVLSHPQALASSDIVQTQLGVA-RENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD-DPDNITRFLVL 188 (241)
Q Consensus 111 ~V~SHpqal~Qc~~fl~~~~~~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d-~~~N~TRF~vl 188 (241)
-|=.++......+++|++.+.. ...+.+..+|.+.+.....+ ...|........-|++++.. +.. .....+.++++
T Consensus 10 ivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~-dlvi~D~~~p~~~g~~~~~~-lr~~~~~~~~pii~~ 87 (129)
T 3h1g_A 10 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEMNGLDLVKK-VRSDSRFKEIPIIMI 87 (129)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTC-CEEEECSCCSSSCHHHHHHH-HHTSTTCTTCCEEEE
T ss_pred EEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCC-CEEEEeCCCCCCCHHHHHHH-HHhcCCCCCCeEEEE
Confidence 3445788888899999888775 56677777888777654333 35555443334455555543 332 23346788888
Q ss_pred eeCCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHH
Q 036073 189 ARDPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFA 224 (241)
Q Consensus 189 ~~~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa 224 (241)
+....... ..+ ..=++.=|-.+..|...|...-
T Consensus 88 s~~~~~~~~~~~~~~g---~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 88 TAEGGKAEVITALKAG---VNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp ESCCSHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHcC---ccEEEeCCCCHHHHHHHHHHHh
Confidence 86543110 001 0112223455777777776543
No 165
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=27.63 E-value=1.1e+02 Score=25.38 Aligned_cols=53 Identities=11% Similarity=-0.046 Sum_probs=35.6
Q ss_pred CCCccEEEEeCCCCcHHHHHHH-h-hCC-CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 10 DGTKVRISFKGSPGSFTEDAAL-K-AYP-NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 10 ~~~~~~ia~LGp~GtfS~~Aa~-~-~~~-~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
....+|||++.-.++.--.-+. + +|+ +.++ ...+..++.+++.+|++|+|.+|
T Consensus 5 ~~~~lriG~~~~~~~~pl~~a~~~g~~~~~~~~-~~~~~~~l~~al~~G~iDia~~~ 60 (291)
T 2nxo_A 5 SRTRPRVGHIQFLNCLPLYWGLARTGTLLDFEL-TKDTPEKLSEQLVRGDLDIGPVT 60 (291)
T ss_dssp --CCCEEEEECSGGGHHHHHHHHHTSGGGGCEE-EEECHHHHHHHHHTTSCSEEEEE
T ss_pred ccCCeEEEEecCCCchhhHHHHHhCCCCCCeEE-EECCHHHHHHHHHcCCCCEeehh
Confidence 3456899999655543222222 2 333 3556 46788999999999999999988
No 166
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.45 E-value=53 Score=23.44 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=60.7
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCC-CCCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD-DPDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d-~~~N~TRF~vl~~ 190 (241)
|=.++......+.+|+..+.....+.|..+|.+.+.+.. + ...|..-.....-|++++.. |.. .....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-~-dlvi~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 9 VDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP-P-DLVLLDIMMEPMDGWETLER-IKTDPATRDIPVLMLTA 85 (138)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC-C-SEEEEESCCSSSCHHHHHHH-HHHSTTTTTSCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC-C-CEEEEeCCCCCCCHHHHHHH-HHcCcccCCCCEEEEEC
Confidence 445777788888899887887777788888888776642 3 34554333223345554433 332 2334678888886
Q ss_pred CCCCCC---CCCCceEEEEEecCCCchHHHHHHHHHHH
Q 036073 191 DPIMPR---TDKPFKTSIVFTLDEGPGVLTKALAVFAL 225 (241)
Q Consensus 191 ~~~~~~---~~~~~ktsi~~~~~~~pGaL~~~L~~fa~ 225 (241)
...... .-+..-..++. =|-.+..|...+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~-KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 86 KPLTPEEANEYGSYIEDYIL-KPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp SCCCHHHHHHTTTTCSEEEE-CCCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHhhcCHhheEe-CCCCHHHHHHHHHHHHH
Confidence 542110 00000012222 24446667777765543
No 167
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=27.26 E-value=86 Score=26.63 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=37.5
Q ss_pred CCccEEEEeCCCCcHHHHHH----HhhC----C-CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 11 GTKVRISFKGSPGSFTEDAA----LKAY----P-NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~Aa----~~~~----~-~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
....+||++.-...+.-... .+++ + ..++++..++.++++++.+|++|+++..
T Consensus 3 ~~~l~iG~~p~~~p~~~~~~~~~l~~~l~k~lG~~ve~~~~~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHcCCCCEEEEC
Confidence 45688999977666543221 1111 2 3567788999999999999999999854
No 168
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=26.89 E-value=27 Score=32.89 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHCCceeeeeeee
Q 036073 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVA 236 (241)
Q Consensus 202 ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSR 236 (241)
+..+.+.+|++||+|.++++.+. +-|++.++=|
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~ 370 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYR 370 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEE
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEee
Confidence 56778889999999999999887 6888888765
No 169
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=25.95 E-value=51 Score=27.61 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=73.6
Q ss_pred CCccEEEEeCCCCcHHH----HHHHhhC-C--CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCC
Q 036073 11 GTKVRISFKGSPGSFTE----DAALKAY-P--NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHR 83 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~----~Aa~~~~-~--~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~ 83 (241)
....|||++ +|..+- ..-...+ . +.++..+.+..++.+++.+|++|++++|..-... .++ ...+
T Consensus 4 ~~~irvg~~--~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~-----~~~--~g~~ 74 (283)
T 3hn0_A 4 DTVIKVSVL--RGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMINAAN-----LYN--KGIK 74 (283)
T ss_dssp CCEEEEEEE--SSTHHHHTHHHHHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHH-----HHH--TTCS
T ss_pred cceEEEEec--CCCcHHHHHHHHhccccccCccEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHH-----HHH--CCCC
Confidence 456899998 232221 1111111 1 2477889999999999999999999997542110 000 0113
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCeeEEEec---HHHHHHHHHHHHhcCC--ceEecc-CHHHHHHHHHhcCCCCeEEe
Q 036073 84 LHIVGEVQFVANFCLLALPGIREEKLKCVLSH---PQALASSDIVQTQLGV--ARENID-DTASAAQYVASNGLRDAGVV 157 (241)
Q Consensus 84 l~I~~E~~l~I~~~L~~~~g~~~~~i~~V~SH---pqal~Qc~~fl~~~~~--~~~~~~-sTa~Aa~~v~~~~~~~~aAI 157 (241)
+.+++-...- ...|++++. ++- |+|... ..+.--.+.+|++.++ +.+... +..++...+..++ -+++.+
T Consensus 75 ~~i~~~~~~g-~~~lv~~~~--LkG-K~Iav~~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~-vDa~~~ 149 (283)
T 3hn0_A 75 IKLAGCPIWG-TLYLVEKTP--LKE-PALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGK-VNRAVL 149 (283)
T ss_dssp CEEEEEEECC-CCEEEECSS--CCS-CCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTS-CSEEEE
T ss_pred eEEEEEeccc-EEEEEecCC--CCC-CEEEecCCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCC-CCEEEe
Confidence 4444432211 123444432 322 355532 2334456778887664 555555 5677777666542 444555
Q ss_pred cCHh
Q 036073 158 ASAR 161 (241)
Q Consensus 158 ~s~~ 161 (241)
..+.
T Consensus 150 ~eP~ 153 (283)
T 3hn0_A 150 GEPF 153 (283)
T ss_dssp CTTH
T ss_pred cccH
Confidence 4444
No 170
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=25.50 E-value=34 Score=28.52 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHhh------CCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc--cCCeEEEEEEEE
Q 036073 21 SPGSFTEDAALKA------YPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL--RHRLHIVGEVQF 92 (241)
Q Consensus 21 p~GtfS~~Aa~~~------~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~--~~~l~I~~E~~l 92 (241)
..|++.+...++. ++..+++.+.+.++++++|.+|++|+.+..- . +++.+. ..++.++++..-
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~--~-------~~~~~~~~~~~l~~~~~~~~ 246 (292)
T 1pb7_A 176 VKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDS--A-------VLEFEASQKCDLVTTGELFF 246 (292)
T ss_dssp BTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEH--H-------HHHHHHHHCTTEEECSSCSE
T ss_pred EcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcH--H-------HHHHHHhcCCCEEEcCcccc
Confidence 3566666554432 1234567889999999999999999877531 1 111111 134666665444
Q ss_pred eeeeeeecCCC
Q 036073 93 VANFCLLALPG 103 (241)
Q Consensus 93 ~I~~~L~~~~g 103 (241)
+..++++.+++
T Consensus 247 ~~~~~ia~~k~ 257 (292)
T 1pb7_A 247 RSGFGIGMRKD 257 (292)
T ss_dssp EEEECCEEETT
T ss_pred CCceEEEEeCC
Confidence 55566666665
No 171
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=24.95 E-value=2.4e+02 Score=21.72 Aligned_cols=114 Identities=9% Similarity=0.057 Sum_probs=59.1
Q ss_pred CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCee--E
Q 036073 37 CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGI---REEKLK--C 111 (241)
Q Consensus 37 ~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~---~~~~i~--~ 111 (241)
.++++. +..++++++.+|++|+++..+.-+.+ -...++. ...+ ..-...++++++. +++|++ +
T Consensus 83 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~--~~~~~~~--~~p~-------~~~~~~~~~~~~~~i~~~~dL~g~~ 150 (259)
T 2v25_A 83 IKLVAV-NAKTRGPLLDNGSVDAVIATFTITPE--RKRIYNF--SEPY-------YQDAIGLLVLKEKKYKSLADMKGAN 150 (259)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCBCCHH--HHTTEEE--CSCS-------EEEEEEEEEEGGGCCCSGGGCTTCE
T ss_pred eEEEEc-CHHHHHHHHhCCCCCEEEecCccCHH--HHhcCcc--cccc-------eeCceEEEEeCCCCCCCHHHhCCCE
Confidence 466776 45899999999999998754321100 0000110 0011 1122333433321 233332 3
Q ss_pred EEecH--HHHHHHHHHHHhcCC--ceEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 036073 112 VLSHP--QALASSDIVQTQLGV--ARENIDDTASAAQYVASNGLRDAGVVASARAAE 164 (241)
Q Consensus 112 V~SHp--qal~Qc~~fl~~~~~--~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 164 (241)
|.... ......++++.+.+. +.+.+.|..++.+.+..+ +-.+++.+...+.
T Consensus 151 i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 205 (259)
T 2v25_A 151 IGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAK--RVDAFSVDKSILL 205 (259)
T ss_dssp EEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHT
T ss_pred EEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcC--CCcEEEecHHHHH
Confidence 33221 122233455555554 567778888888888875 3457777665544
No 172
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=24.84 E-value=85 Score=27.90 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=35.9
Q ss_pred CccEEEEeCCCCcHHHHHHHhhC------C--CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 12 TKVRISFKGSPGSFTEDAALKAY------P--NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~------~--~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
...|||+..| ||-++...+.++ + +.+++.+. ..+...++.+|++|..+++
T Consensus 154 kGk~iav~~~-gs~~~~~l~~~L~~~Gl~~~~dv~~v~~~-~~~~~~aL~~G~vDa~~~~ 211 (417)
T 2g29_A 154 TDPKVAMTFP-GGTHDMWIRYWLAAGGMEPGKDFSTIVVP-PAQMVANVKVNAMESFCVG 211 (417)
T ss_dssp SSCEEEESST-TSHHHHHHHHHHHHTTCCBTTTBEEEECC-GGGHHHHHHTTSCSEEEEE
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCCCCCceEEEECC-HHHHHHHHHcCCCCEEEeC
Confidence 3578998654 676666655432 1 35677774 5789999999999999875
No 173
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=24.48 E-value=2.5e+02 Score=23.02 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=78.1
Q ss_pred cEEEEeCCCCcHHHHHHHhhC------C----C-Ccee---------ecCCHHHHHHHHHcCCcceEEEeeeccccccee
Q 036073 14 VRISFKGSPGSFTEDAALKAY------P----N-CETI---------PCDEFEEAFKAVELWLAEKAILPIENSSGGSIH 73 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~~------~----~-~~~~---------~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~ 73 (241)
.|||.. +|.-++.+...+- . + -+++ .+---.|+-.-|+.|.+|+||+=
T Consensus 2 L~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~~i~~~~~R~~DIp~yV~~G~~DlGItG---------- 69 (208)
T 1z7m_E 2 IKIAIT--KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEHGIVDIGFVG---------- 69 (208)
T ss_dssp CCEEEE--TTHHHHHHHHHHHTTTCCCCCC----CCSEECCTTSCCEEEECHHHHHHHHHTTSCSEEEEE----------
T ss_pred EEEEEc--cchhHHHHHHHHHHcCCCcccCCCCCcceEeecCCCEEEEEECchhHHHHHhCCCccEEEee----------
Confidence 577875 9999988876431 1 1 1122 22235799999999999999974
Q ss_pred ccccccccCCe-EEEEEEEEe---eeeeeecCCCCC-cCC--eeEEEecHHHHHHHHHHHHhcCCc--eEeccCHHHHHH
Q 036073 74 HNYDLLLRHRL-HIVGEVQFV---ANFCLLALPGIR-EEK--LKCVLSHPQALASSDIVQTQLGVA--RENIDDTASAAQ 144 (241)
Q Consensus 74 ~t~d~L~~~~l-~I~~E~~l~---I~~~L~~~~g~~-~~~--i~~V~SHpqal~Qc~~fl~~~~~~--~~~~~sTa~Aa~ 144 (241)
.|+|.+++. .+..-..|. -+++++++++.. .++ -++|.+-..-+ .++|++++++. .+..+-..|.|=
T Consensus 70 --~D~l~E~~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~~~RIATkyp~l--~~~yf~~~gi~~~ii~l~GsvE~ap 145 (208)
T 1z7m_E 70 --KDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRV--TKKYFAQKQEDIEIIKLEGSVELGP 145 (208)
T ss_dssp --HHHHHHSSCCCEEEEEEETTCCCEEEEEECGGGGGCCCSSCEEEEESCHHH--HHHHHHHTTCCEEEEECSSCTTHHH
T ss_pred --eeeeeecCCCCeEEeeccccCCEEEEEEEECCCccchhcCCCEEEECchHH--HHHHHHHcCCceEEEECCCceeecc
Confidence 244444422 233333342 334555554411 122 34566655544 47999998764 454444444443
Q ss_pred HHHhcCCCC-eEEe-cCHhhHHhcCCceee
Q 036073 145 YVASNGLRD-AGVV-ASARAAEIYGLNILA 172 (241)
Q Consensus 145 ~v~~~~~~~-~aAI-~s~~aa~~ygL~il~ 172 (241)
.+ +.-+ .+=| .+-..-+.+||++++
T Consensus 146 ~~---GlAD~IvDivsTG~TLr~NgL~~ie 172 (208)
T 1z7m_E 146 VV---GLADAIVDIVETGNTLSANGLEVIE 172 (208)
T ss_dssp HT---TSCSEEEEEESSSHHHHTTTCEEEE
T ss_pred CC---CcccEEEEEeCChHHHHHCCCEEeE
Confidence 22 1111 1223 455667899999985
No 174
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=24.07 E-value=2.6e+02 Score=22.98 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=80.2
Q ss_pred CccEEEEeCCCCcHHHHHHHhhC------C----CCceeecC---------CHHHHHHHHHcCCcceEEEeeecccccce
Q 036073 12 TKVRISFKGSPGSFTEDAALKAY------P----NCETIPCD---------EFEEAFKAVELWLAEKAILPIENSSGGSI 72 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~~Aa~~~~------~----~~~~~~~~---------s~~~v~~av~~g~~d~gVvPiENS~~G~V 72 (241)
.+.|||.. +|.-.+.+...+- . +-+++... --.|+-.-|+.|.+|+||+=
T Consensus 4 ~~L~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~R~l~~~~~~~i~~~~~R~~DIp~yV~~G~~DlGItG--------- 72 (206)
T 1ve4_A 4 FALTVALP--KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKEGGVALLELRNKDVPIYVDLGIAEIGVVG--------- 72 (206)
T ss_dssp SSEEEEEE--CSTTHHHHHHHHHHTTCCCCCC-----CEECCTTSEEEEEECGGGHHHHHHTTSSSEEEEE---------
T ss_pred ccEEEEEc--CcccHHHHHHHHHHcCCCCcCCCCCcceEecCCCCeEEEEECchhHHHHHhCCCccEEEee---------
Confidence 46789986 9999998876431 1 11222222 23688999999999999964
Q ss_pred eccccccccCCeEEEEEEEE---eeeeeeecCCCC-CcCCeeEEEecHHHHHHHHHHHHhcCC--ceEeccCHHHHHHHH
Q 036073 73 HHNYDLLLRHRLHIVGEVQF---VANFCLLALPGI-REEKLKCVLSHPQALASSDIVQTQLGV--ARENIDDTASAAQYV 146 (241)
Q Consensus 73 ~~t~d~L~~~~l~I~~E~~l---~I~~~L~~~~g~-~~~~i~~V~SHpqal~Qc~~fl~~~~~--~~~~~~sTa~Aa~~v 146 (241)
.|+|.+++..+..-..| ..+++++++++. .+ -++|.+-..-+ .++|++++++ +.+..+-..|.|=.+
T Consensus 73 ---~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~--~~RIATkyp~l--~~~yf~~~gi~~~ii~l~GsvE~ap~~ 145 (206)
T 1ve4_A 73 ---KDVLLDSGRDLFEPVDLGFGACRLSLIRRPGDTGP--IRRVATKYPNF--TARLLKERGWAADVVELSGNIELAAVT 145 (206)
T ss_dssp ---HHHHHHCCSCCEEEEECCCSCEEEEEEECTTCCSC--CCEEEESCHHH--HHHHHHHTTCCCEEEECSSCTHHHHHT
T ss_pred ---eeeeeecCCCeEEeeccccCcEEEEEEEECCcccC--CCEEEECchHH--HHHHHHHCCCcEEEEECCCceeeccCC
Confidence 24444432222222233 234456665552 23 44566655544 4789998764 556655555554332
Q ss_pred HhcCCCC-eEEe-cCHhhHHhcCCceee
Q 036073 147 ASNGLRD-AGVV-ASARAAEIYGLNILA 172 (241)
Q Consensus 147 ~~~~~~~-~aAI-~s~~aa~~ygL~il~ 172 (241)
+.-+ .+=| .+-..-+.+||++++
T Consensus 146 ---GlAD~IvDivsTG~TLraNgL~~ie 170 (206)
T 1ve4_A 146 ---GLADAVVDVVQTGATLRAAGLVEVE 170 (206)
T ss_dssp ---TSSSEEEEEESSSHHHHHTTCEEEE
T ss_pred ---CCceEEEEeccCHHHHHHCCCEEeE
Confidence 1111 2223 455667899999985
No 175
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.96 E-value=1.3e+02 Score=21.08 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=63.1
Q ss_pred eeEEEecHHHHHHHHHHHHhcCC--ceEeccCHHHHHHHHHhc-----CCCCeEEecCHhhHHhcCCceeecccCCCC-C
Q 036073 109 LKCVLSHPQALASSDIVQTQLGV--ARENIDDTASAAQYVASN-----GLRDAGVVASARAAEIYGLNILADRIQDDP-D 180 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~--~~~~~~sTa~Aa~~v~~~-----~~~~~aAI~s~~aa~~ygL~il~~~I~d~~-~ 180 (241)
|--|-.++......+++|++.+. ....+.|..+|.+.+.+. ..+ ...|........-|++++.. +.... .
T Consensus 10 ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~-dlii~D~~l~~~~g~~~~~~-l~~~~~~ 87 (143)
T 2qvg_A 10 ILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHP-KLILLDINIPKMNGIEFLKE-LRDDSSF 87 (143)
T ss_dssp EEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCC-SEEEEETTCTTSCHHHHHHH-HTTSGGG
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCC-CEEEEecCCCCCCHHHHHHH-HHcCccc
Confidence 44555678888888999998775 667778888888887751 223 34444433333444544432 33322 2
Q ss_pred CceeEEEEeeCCCCC-----CCCCCceEEEEEecCCCchHHHHHHHHHHH
Q 036073 181 NITRFLVLARDPIMP-----RTDKPFKTSIVFTLDEGPGVLTKALAVFAL 225 (241)
Q Consensus 181 N~TRF~vl~~~~~~~-----~~~~~~ktsi~~~~~~~pGaL~~~L~~fa~ 225 (241)
..+++++++...... ...+ ..-++.-|-.+..|...+.....
T Consensus 88 ~~~~ii~ls~~~~~~~~~~~~~~g---~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFESLN---IRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHTTTT---CCEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcC---CCeEEECCCCHHHHHHHHHHHHH
Confidence 468888888754310 0011 11233335566777777655433
No 176
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.91 E-value=1.6e+02 Score=20.69 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=66.6
Q ss_pred eeEEEecHHHHHHHHHHHHhcCC--ceEeccCHHHHHHHHHhc---------CCCCeEEecCHhhHHhcCCceeecccCC
Q 036073 109 LKCVLSHPQALASSDIVQTQLGV--ARENIDDTASAAQYVASN---------GLRDAGVVASARAAEIYGLNILADRIQD 177 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~--~~~~~~sTa~Aa~~v~~~---------~~~~~aAI~s~~aa~~ygL~il~~~I~d 177 (241)
|=-|=.++......+++|.+.+. ....+.|..+|.+.+.+. ..+ ...|........-|++++. .|..
T Consensus 9 iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~-dlvi~D~~l~~~~g~~~~~-~l~~ 86 (149)
T 1k66_A 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRP-AVILLDLNLPGTDGREVLQ-EIKQ 86 (149)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCC-SEEEECSCCSSSCHHHHHH-HHTT
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCC-cEEEEECCCCCCCHHHHHH-HHHh
Confidence 44555678888889999998765 667778888888888752 223 3455443333344555443 3333
Q ss_pred CC-CCceeEEEEeeCCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHHHCCc
Q 036073 178 DP-DNITRFLVLARDPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFALREI 228 (241)
Q Consensus 178 ~~-~N~TRF~vl~~~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~i 228 (241)
.. ...+.+++++....... ..+ -..+ +.-|-.+..|...+..+.++-+
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~~~~~~g--~~~~-l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 87 DEVLKKIPVVIMTTSSNPKDIEICYSYS--ISSY-IVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp STTGGGSCEEEEESCCCHHHHHHHHHTT--CSEE-EECCSSHHHHHHHHHHHHHHHH
T ss_pred CcccCCCeEEEEeCCCCHHHHHHHHHCC--CCEE-EeCCCCHHHHHHHHHHHHHHhh
Confidence 22 25688888887543110 001 1122 2335567778887777655443
No 177
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=23.88 E-value=23 Score=30.81 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=66.2
Q ss_pred CCccEEEEeCCCCcHHHH---HHHhhCC--C--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc---
Q 036073 11 GTKVRISFKGSPGSFTED---AALKAYP--N--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL--- 80 (241)
Q Consensus 11 ~~~~~ia~LGp~GtfS~~---Aa~~~~~--~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~--- 80 (241)
....|||+.+ |.+.+. ++...+. + .+++.+.+......|+.+|++|....-.. ..++...
T Consensus 22 ~~tIkVG~~~--~p~~~il~~~~k~~l~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~ 91 (275)
T 3gxa_A 22 KKEIVFGTTV--GDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHK--------PYLDDFKKEH 91 (275)
T ss_dssp -CEEEEEEET--THHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECH--------HHHHHHHHHH
T ss_pred CCeEEEEEeC--CChHHHHHHHHHHHHHHcCCeEEEEEeCCcHhHHHHHHcCCCCeeecCCH--------HHHHHHHHHc
Confidence 3457999985 334432 2333442 2 57899999999999999999999885322 1222221
Q ss_pred cCCeEEEEEEEEeeeeeeecCCCCCcCCee---EEEecHHHHHHHH--HHHHhcC
Q 036073 81 RHRLHIVGEVQFVANFCLLALPGIREEKLK---CVLSHPQALASSD--IVQTQLG 130 (241)
Q Consensus 81 ~~~l~I~~E~~l~I~~~L~~~~g~~~~~i~---~V~SHpqal~Qc~--~fl~~~~ 130 (241)
..+|..++.+.+.- ..|.+.+=.+++|++ +|.----+-.|-| ..|.+.|
T Consensus 92 g~~Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~~aG 145 (275)
T 3gxa_A 92 NLDITEVFQVPTAP-LGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELG 145 (275)
T ss_dssp TCCEEEEEECCBCC-CEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeccccc-eEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHHHCC
Confidence 24677676654332 567776656788887 5554444444444 4444433
No 178
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.79 E-value=63 Score=23.63 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=62.8
Q ss_pred eeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCC-CCceeEEE
Q 036073 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDP-DNITRFLV 187 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~-~N~TRF~v 187 (241)
|=-|=.++......+++|.+.+.....+.|..+|.+.+.+. .++ ..|.........|++++.. |...+ ...+.+++
T Consensus 10 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~d-lii~D~~l~~~~g~~~~~~-lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT-RPD-LIISDVLMPEMDGYALCRW-LKGQPDLRTIPVIL 86 (154)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC-CCS-EEEEESCCSSSCHHHHHHH-HHHSTTTTTSCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-CCC-EEEEeCCCCCCCHHHHHHH-HHhCCCcCCCCEEE
Confidence 33445678888889999998888777778888888877654 233 4554433333445555432 33322 35678888
Q ss_pred EeeCCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHHH
Q 036073 188 LARDPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVFA 224 (241)
Q Consensus 188 l~~~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~fa 224 (241)
++....... ..+. .-+ +.=|-.+..|...+....
T Consensus 87 ~s~~~~~~~~~~~~~~g~--~~~-l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGA--DDF-ITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp EECCCSHHHHHHHHHHCC--SEE-EESSCCHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHCCC--CEE-EeCCCCHHHHHHHHHHHH
Confidence 886543110 0011 122 223445667777666553
No 179
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=23.59 E-value=3.4e+02 Score=23.72 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=63.5
Q ss_pred ee-EEEecHHHHHHHHHHHHhc-----CCceEeccCHHHHHHHHHhcCCCCeEEecCHh--hH--HhcCCceeecccCCC
Q 036073 109 LK-CVLSHPQALASSDIVQTQL-----GVARENIDDTASAAQYVASNGLRDAGVVASAR--AA--EIYGLNILADRIQDD 178 (241)
Q Consensus 109 i~-~V~SHpqal~Qc~~fl~~~-----~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~--aa--~~ygL~il~~~I~d~ 178 (241)
|+ .|.|+.+ +.-|+.|-... .++.+...|..+.++.+..++ -+.+.+.+.. .| +.|||+.+.....+.
T Consensus 7 vrwCv~s~~E-~~KC~~l~~~~~~~~~~veCv~~~s~~~Ci~aI~~g~-aD~~~ld~~~~~~A~~~~~~l~pi~~e~~~~ 84 (332)
T 1iej_A 7 IRWCTISSPE-EKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNE-ADAITLDGGQVFEAGLAPYKLKPIAAEVYEH 84 (332)
T ss_dssp EEEEESSHHH-HHHHHHHHHHTTTSSEEEEEEECSSHHHHHHHHHTTS-CCBEEECHHHHHHHTSTTTCCEEEEEEEEEC
T ss_pred EEEEECCHHH-HHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHcCC-CcEEEeCccceeEecccccCCEEEEEEEecC
Confidence 44 3566665 88999887663 366788899999999998763 4555664433 33 458998776443332
Q ss_pred C-CCceeE--EEEeeCCCCCC-CCCCceEEEEEecCCCchHHHHHHHHHHHCCc
Q 036073 179 P-DNITRF--LVLARDPIMPR-TDKPFKTSIVFTLDEGPGVLTKALAVFALREI 228 (241)
Q Consensus 179 ~-~N~TRF--~vl~~~~~~~~-~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~i 228 (241)
. +..++| ++|.|+...-. .+-..|.+-.-.+....|=+. -+..+.++|+
T Consensus 85 ~~~~~~~Y~aVaVVkkdS~isl~dLkGKksChtg~~stsGw~~-Pi~~L~~~g~ 137 (332)
T 1iej_A 85 TEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSAGWNI-PIGTLLHRGA 137 (332)
T ss_dssp SSSEESEEEEEEEEETTCCCCGGGCTTCEEEESCTTCTTTTHH-HHHHHHHTTS
T ss_pred CCCCCCceEEEEEEeCCCCCCHHHHCCCceEcCCCCCccchHH-HHHHHHHcCC
Confidence 1 112333 34445432111 111234433323333355555 3445555554
No 180
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=23.45 E-value=79 Score=27.92 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 35 PNCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 35 ~~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
+..+.+.-.+..++++++.+|++|++.+.
T Consensus 33 ~~vecv~~~~~~~ci~aI~~g~AD~~~ld 61 (334)
T 1h45_A 33 PPVSCIKRDSPIQCIQAIAENRADAVTLD 61 (334)
T ss_dssp CCEEEEECSSHHHHHHHHHTTSCCBEEEC
T ss_pred CceEEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 45788999999999999999999999986
No 181
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=23.44 E-value=3.1e+02 Score=22.47 Aligned_cols=121 Identities=14% Similarity=-0.007 Sum_probs=58.0
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCcceEEEeeecc-cccceeccccccccCCeEEEEEEEEeeeeeeecCCCCCcCC--
Q 036073 33 AYPNCETIP-CDEFEEAFKAVELWLAEKAILPIENS-SGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEK-- 108 (241)
Q Consensus 33 ~~~~~~~~~-~~s~~~v~~av~~g~~d~gVvPiENS-~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~g~~~~~-- 108 (241)
.+|+.++.. ..+-.++.+.+.+|++|+|+..-... ..+... ..|.+..+. +..+-.|-|...+..+++|
T Consensus 118 ~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~l~~---~~L~~~~~~----~v~~~~~pl~~~~~~~~~dL~ 190 (324)
T 1al3_A 118 RYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM---LPCYHWNRS----IVVTPEHPLATKGSVSIEELA 190 (324)
T ss_dssp HCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTTSCEEE---EEEEEECEE----EEECTTSTTTTTSCCCHHHHH
T ss_pred HCCCCEEEEEECCHHHHHHHHHCCCceEEEEecCCCCCCCeeE---EEecCCceE----EEEcCCCccccCCCCCHHHHh
Confidence 357655432 34568899999999999999752110 011000 001111111 1223333332222223333
Q ss_pred -eeEEEecHH--HHHHHHHHHHhcCCc--e-EeccCHHHHHHHHHhcCCCCeEEecCHhhH
Q 036073 109 -LKCVLSHPQ--ALASSDIVQTQLGVA--R-ENIDDTASAAQYVASNGLRDAGVVASARAA 163 (241)
Q Consensus 109 -i~~V~SHpq--al~Qc~~fl~~~~~~--~-~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa 163 (241)
...|.-.+. ...+..+|+.+.+.. . ..++|.......+..+ ...++.+..++
T Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~G---~Giailp~~~~ 248 (324)
T 1al3_A 191 QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLG---LGVGVIASMAV 248 (324)
T ss_dssp TSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHT---SCEEEEEGGGC
T ss_pred CCCeEEecCCCcHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHhC---CCeEEechhhh
Confidence 233432221 234456677665543 2 4556666666677664 34666666543
No 182
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=23.34 E-value=43 Score=26.16 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=14.1
Q ss_pred CCcccCCCCCCCccEEEEeCCCCcH
Q 036073 1 PLTISVTPNDGTKVRISFKGSPGSF 25 (241)
Q Consensus 1 ~~~~~~~~~~~~~~~ia~LGp~Gtf 25 (241)
|.+-+.+.....++.|.+.||+||=
T Consensus 8 ~~~~~~~~~~~~~~~I~l~G~~GsG 32 (201)
T 2cdn_A 8 HHHSSGLVPRGSHMRVLLLGPPGAG 32 (201)
T ss_dssp --------CCCSCCEEEEECCTTSS
T ss_pred ccccccccCCCCCeEEEEECCCCCC
Confidence 4455666666777899999999863
No 183
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.27 E-value=48 Score=23.82 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=60.1
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|=.++......++.|.+.+.+...+.+..+|.+.+.+.. ++ ..|........-|++++. .|... ....+++++++.
T Consensus 14 vd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~d~~l~~~~g~~~~~-~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 14 VDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH-PH-LIITEANMPKISGMDLFN-SLKKNPQTASIPVIALSG 90 (147)
T ss_dssp ECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC-CS-EEEEESCCSSSCHHHHHH-HHHTSTTTTTSCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC-CC-EEEEcCCCCCCCHHHHHH-HHHcCcccCCCCEEEEeC
Confidence 334667777888888888887777788888888777652 33 444433222334454443 23332 345688898887
Q ss_pred CCCCCC-----CCCCceEEEEEecCCCchHHHHHHHHH
Q 036073 191 DPIMPR-----TDKPFKTSIVFTLDEGPGVLTKALAVF 223 (241)
Q Consensus 191 ~~~~~~-----~~~~~ktsi~~~~~~~pGaL~~~L~~f 223 (241)
...... ..+. .- ++.-|-.+..|...|...
T Consensus 91 ~~~~~~~~~~~~~g~--~~-~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 91 RATAKEEAQLLDMGF--ID-FIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp SCCHHHHHHHHHHTC--SE-EEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCC--CE-EEeCCCCHHHHHHHHHHH
Confidence 643110 0011 12 233355667777776654
No 184
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.17 E-value=33 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.1
Q ss_pred cEEEEeCCCC----cHHHHHHHhh
Q 036073 14 VRISFKGSPG----SFTEDAALKA 33 (241)
Q Consensus 14 ~~ia~LGp~G----tfS~~Aa~~~ 33 (241)
|.|.++||+| |.+..-|.+|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999985 6777666654
No 185
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=23.12 E-value=1.3e+02 Score=25.57 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=40.1
Q ss_pred ccEEEEeCCCCcHHHHHHHhhCC--CCceeecCCHHHHHHHHHcCCcceEEEeeec
Q 036073 13 KVRISFKGSPGSFTEDAALKAYP--NCETIPCDEFEEAFKAVELWLAEKAILPIEN 66 (241)
Q Consensus 13 ~~~ia~LGp~GtfS~~Aa~~~~~--~~~~~~~~s~~~v~~av~~g~~d~gVvPiEN 66 (241)
..|||+- ++||=.+.=++.+.. +.+++.. ...++++++.+|+ .||+..+=
T Consensus 89 GkkIgvw-rkGSaaDVl~R~ll~~~g~eVvy~-Dw~di~~ml~~Ge--sAVva~~~ 140 (244)
T 3mst_A 89 SGRIYTL-RKGTLADFNARILAYYDKAQVINA-DGDTCIKMANEGY--SALVGNEI 140 (244)
T ss_dssp SSEEEES-STTSHHHHHHHHHHHHHTCEEEEC-CHHHHHHHHHTTC--EEEEETTT
T ss_pred CCeEecc-CCCcHHHHHHHHHHHHhCCeEEEC-CHHHHHHHHhCCC--cEEEeecc
Confidence 4678877 789998877766542 2788888 8999999999998 99998774
No 186
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=22.92 E-value=1e+02 Score=24.92 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=34.1
Q ss_pred ccEEEEeCCCCcHH-HHHHHh-hCCC---CceeecCCHHHHHHHHHcCCcceEEEee
Q 036073 13 KVRISFKGSPGSFT-EDAALK-AYPN---CETIPCDEFEEAFKAVELWLAEKAILPI 64 (241)
Q Consensus 13 ~~~ia~LGp~GtfS-~~Aa~~-~~~~---~~~~~~~s~~~v~~av~~g~~d~gVvPi 64 (241)
..||||+.-.+.-- ..|..+ +|.+ .++ ...+..++.+++.+|++|+|++|.
T Consensus 3 ~l~ig~~~~~~~~p~~~a~~~g~~~~g~~v~~-~~~~~~~~~~al~~G~~D~~~~~~ 58 (272)
T 2czl_A 3 ALRLGFSPCPNDTFIFYALVHGRVESPVPLEP-VLEDVETLNRWALEGRLPLTKLSY 58 (272)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTSSCCSSCEEE-EECCHHHHHHHHHTTCCSEEEEEH
T ss_pred eEEEeecCCCcHHHHHHHHHhCccCCCceeEE-ecCCHHHHHHHHHcCCCCEEEecH
Confidence 47899884433211 122222 4432 356 778899999999999999999874
No 187
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.64 E-value=57 Score=22.45 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=56.5
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|=.++......+.+|...+.+...+.|..+|.+.+.+.. ++ ..|........-|++++. .+... ....+.+++++.
T Consensus 7 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~-~d-lvi~D~~l~~~~g~~~~~-~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 7 VEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK-PD-LILMDIQLPEISGLEVTK-WLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC-CS-EEEEESBCSSSBHHHHHH-HHHHSTTTTTSCEEEEC-
T ss_pred EcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CC-EEEEeCCCCCCCHHHHHH-HHHcCccccCCcEEEEEC
Confidence 345777788888999887887777777777777776542 33 444332222334444443 23322 234678888876
Q ss_pred CCCCCCC-----CCCceEEEEEecCCCchHHHHHHHHHH
Q 036073 191 DPIMPRT-----DKPFKTSIVFTLDEGPGVLTKALAVFA 224 (241)
Q Consensus 191 ~~~~~~~-----~~~~ktsi~~~~~~~pGaL~~~L~~fa 224 (241)
....... .+. .. .+.-|-.+..|...+....
T Consensus 84 ~~~~~~~~~~~~~g~--~~-~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 84 FAMKGDEERIREGGC--EA-YISKPISVVHFLETIKRLL 119 (124)
T ss_dssp -----CHHHHHHHTC--SE-EECSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCC--CE-EEeCCCCHHHHHHHHHHHH
Confidence 5322110 010 11 1222445677777776544
No 188
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=22.59 E-value=2.1e+02 Score=23.64 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCccEEEEeCCCCcHHHHHHHhhC------C----C-Cce----------eecCCHHHHHHHHHcCCcceEEEeeeccc
Q 036073 10 DGTKVRISFKGSPGSFTEDAALKAY------P----N-CET----------IPCDEFEEAFKAVELWLAEKAILPIENSS 68 (241)
Q Consensus 10 ~~~~~~ia~LGp~GtfS~~Aa~~~~------~----~-~~~----------~~~~s~~~v~~av~~g~~d~gVvPiENS~ 68 (241)
.+.+.|||.. +|.-.+.+...+- . + -++ +.+---.|+-.-|+.|.+|+||+=
T Consensus 2 ~~~mL~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~~~v~~~~~R~~DIp~yV~~G~~DlGItG----- 74 (214)
T 2vd2_A 2 MGKLLTMAMP--KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAG----- 74 (214)
T ss_dssp CCCCEEEEEE--CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGGGTEEEEEECTTHHHHHHHHTSSSEEECC-----
T ss_pred CCccEEEEEc--ccccHHHHHHHHHHcCCCccCCCCCCCceEeecCCCCEEEEEECchhHHHHHhCCCccEEEee-----
Confidence 3557899986 9999998876431 1 1 111 122234689999999999999963
Q ss_pred ccceeccccccccCCeEEEEEEEE---eeeeeeecCCCCCcCC-eeEEEecHHHHHHHHHHHHhcCC--ceEeccCHHHH
Q 036073 69 GGSIHHNYDLLLRHRLHIVGEVQF---VANFCLLALPGIREEK-LKCVLSHPQALASSDIVQTQLGV--ARENIDDTASA 142 (241)
Q Consensus 69 ~G~V~~t~d~L~~~~l~I~~E~~l---~I~~~L~~~~g~~~~~-i~~V~SHpqal~Qc~~fl~~~~~--~~~~~~sTa~A 142 (241)
.|+|.+++..+..-..| +-+++++++++.+.++ -++|.+-..-+ .++|++++++ +.+..+-..|.
T Consensus 75 -------~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~RIATkyp~l--~~~yf~~~gi~~~ii~l~GsvE~ 145 (214)
T 2vd2_A 75 -------KDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNV--ASSYFREQGEQVEIIKLNGSIEL 145 (214)
T ss_dssp -------THHHHSCSCSSEEEEECTTSCCEEEEEECTTCCCCSSSCEEEESCHHH--HHHHHHHHCCCCEEEECCSCTTH
T ss_pred -------eeeeeecCCCeEEeeccccCCEEEEEEEECCCChhhCCcEEEECcHHH--HHHHHHHcCCcEEEEECCCceee
Confidence 24444442222222233 2344566655422222 34566655544 4889998764 55555544444
Q ss_pred HHHHHhcCCCC-eEEe-cCHhhHHhcCCceee
Q 036073 143 AQYVASNGLRD-AGVV-ASARAAEIYGLNILA 172 (241)
Q Consensus 143 a~~v~~~~~~~-~aAI-~s~~aa~~ygL~il~ 172 (241)
|=.+ +.-+ .+=| .+-..-+.+||++++
T Consensus 146 aP~~---GlADaIvDivsTG~TLraNgL~~ie 174 (214)
T 2vd2_A 146 APLI---GLADRIVDIVSTGQTLKENGLVETE 174 (214)
T ss_dssp HHHT---TSCSEEEEEECCSSSSCTTSCEEEE
T ss_pred ccCC---CCceEEEEEeCCHHHHHHCCCEEeE
Confidence 4322 1111 1223 344455778998884
No 189
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=22.56 E-value=1.6e+02 Score=24.85 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=66.1
Q ss_pred CccEEEEeCCCCcHHH--HHHHhhCC-----CCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccc---c
Q 036073 12 TKVRISFKGSPGSFTE--DAALKAYP-----NCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLL---R 81 (241)
Q Consensus 12 ~~~~ia~LGp~GtfS~--~Aa~~~~~-----~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~---~ 81 (241)
...|||+.+- .+.+ +.+...+. +.+++.+.+..+.-.|+.+|++|....=.. ..++... .
T Consensus 3 ~~ikVG~~~~--p~~~i~~~~~~~l~~~~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyl~~~~k~~g 72 (240)
T 3tqw_A 3 AMVRVGTIAG--PETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHL--------PYLKAQIEMRG 72 (240)
T ss_dssp -CEEEEEETT--HHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHTTSCSEEEEEEH--------HHHHHHHHHHC
T ss_pred ceEEEEEeCC--ChHHHHHHHHHHHHHhcCCeEEEEEeCChHhHHHHHHcCCcCeeccCCH--------HHHHHHHHHCC
Confidence 3578999842 2332 22322221 368899999999999999999999876432 1222221 2
Q ss_pred CCeEEEEEEEEeeeeeeecCCCCCcCCee---EEEec--HHHHHHHHHHHHhcCC
Q 036073 82 HRLHIVGEVQFVANFCLLALPGIREEKLK---CVLSH--PQALASSDIVQTQLGV 131 (241)
Q Consensus 82 ~~l~I~~E~~l~I~~~L~~~~g~~~~~i~---~V~SH--pqal~Qc~~fl~~~~~ 131 (241)
.+|..++.+.+.- ..|.+.+=.+++|++ +|.-- |--.+..-..|.+.|+
T Consensus 73 ~~lv~v~~~~~~p-~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~aGL 126 (240)
T 3tqw_A 73 YKIVSIGKTFVYP-MGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQL 126 (240)
T ss_dssp CCEEEEEEEEECC-CEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTS
T ss_pred CCEEEEeeccccc-eEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHCCC
Confidence 4677777665543 577776666788887 55433 3334444445565553
No 190
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=22.45 E-value=39 Score=31.19 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=23.4
Q ss_pred cCCCchHHHHHHHHHHHCCceeeeee
Q 036073 209 LDEGPGVLTKALAVFALREINLTKVF 234 (241)
Q Consensus 209 ~~~~pGaL~~~L~~fa~~~iNLt~Ie 234 (241)
..+.||.+.++++.|++.|||+-.|-
T Consensus 414 m~~~~Gvaak~f~aL~~~~InI~mis 439 (473)
T 3c1m_A 414 MRGAKGIAGKIFTAVSESGANIKMIA 439 (473)
T ss_dssp TTTCTTHHHHHHHHHHHHTCCCCEEE
T ss_pred CCCChhHHHHHHHHHHHCCCCEEEEe
Confidence 46899999999999999999997774
No 191
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.95 E-value=2.1e+02 Score=19.99 Aligned_cols=111 Identities=5% Similarity=-0.095 Sum_probs=59.8
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCC-CCCceeEEEEee
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDD-PDNITRFLVLAR 190 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 190 (241)
|=.++......+++|.+. .....+.|..+|.+.+.+.. + ...|........-|++++.. +... ....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~-~-dlvi~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 9 IDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH-P-DLVILDMDIIGENSPNLCLK-LKRSKGLKNVPLILLFS 84 (140)
T ss_dssp ECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC-C-SEEEEETTC------CHHHH-HHTSTTCTTCCEEEEEC
T ss_pred EeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC-C-CEEEEeCCCCCCcHHHHHHH-HHcCcccCCCCEEEEec
Confidence 334677777888888776 66667788888888877653 3 35555544445667766643 3332 225678888876
Q ss_pred CCCCCCC--CCCceEEEEEecCCCchHHHHHHHHHHHC
Q 036073 191 DPIMPRT--DKPFKTSIVFTLDEGPGVLTKALAVFALR 226 (241)
Q Consensus 191 ~~~~~~~--~~~~ktsi~~~~~~~pGaL~~~L~~fa~~ 226 (241)
....... .-..-..=++.-|-.+..|...+.....+
T Consensus 85 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 85 SEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp C----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 5432110 00001112233356678888887766443
No 192
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.78 E-value=90 Score=21.26 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=60.2
Q ss_pred EEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhH-HhcCCceeecccCCC-CCCceeEEEEe
Q 036073 112 VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAA-EIYGLNILADRIQDD-PDNITRFLVLA 189 (241)
Q Consensus 112 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa-~~ygL~il~~~I~d~-~~N~TRF~vl~ 189 (241)
|=.++......+++|++.+.+...+.+..+|.+.+.+.. ++ ..|...... ...|++++. .+... ....++++++
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~d-lvi~d~~~~~~~~g~~~~~-~l~~~~~~~~~~ii~~- 86 (127)
T 2gkg_A 11 VESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR-PD-LVVLAVDLSAGQNGYLICG-KLKKDDDLKNVPIVII- 86 (127)
T ss_dssp ECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC-CS-EEEEESBCGGGCBHHHHHH-HHHHSTTTTTSCEEEE-
T ss_pred EeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC-CC-EEEEeCCCCCCCCHHHHHH-HHhcCccccCCCEEEE-
Confidence 445777788888999888888877888888888877653 43 444433222 344454443 23322 2456788888
Q ss_pred eCCCCC-----CCCCCceEEEEEecCCCchHHHHHHHHHH
Q 036073 190 RDPIMP-----RTDKPFKTSIVFTLDEGPGVLTKALAVFA 224 (241)
Q Consensus 190 ~~~~~~-----~~~~~~ktsi~~~~~~~pGaL~~~L~~fa 224 (241)
...... ...+ ..-++.-|-.+..|...+....
T Consensus 87 ~~~~~~~~~~~~~~g---~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 87 GNPDGFAQHRKLKAH---ADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp ECGGGHHHHHHSTTC---CSEEEESSCCHHHHHHHHHHHH
T ss_pred ecCCchhHHHHHHhC---cchheeCCCCHHHHHHHHHHHH
Confidence 432210 0011 1122333556777777776553
No 193
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=21.47 E-value=77 Score=27.91 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=25.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcceEEEe
Q 036073 36 NCETIPCDEFEEAFKAVELWLAEKAILP 63 (241)
Q Consensus 36 ~~~~~~~~s~~~v~~av~~g~~d~gVvP 63 (241)
..+.+.-.+..++++++.+|++|++.+.
T Consensus 36 ~vecv~~~dy~~ci~ai~~g~aD~~~l~ 63 (327)
T 1ryo_A 36 SVACVKKASYLDCIRAIAANEADAVTLD 63 (327)
T ss_dssp EEEEEEESSHHHHHHHHHTTSCCBEEEC
T ss_pred ceEEEecCCHHHHHHHHHcCCCcEEEeC
Confidence 4678899999999999999999999986
No 194
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=21.43 E-value=64 Score=28.59 Aligned_cols=30 Identities=10% Similarity=-0.164 Sum_probs=25.3
Q ss_pred ceeecCCHHHHHHHHHcCCcceEEEeeecc
Q 036073 38 ETIPCDEFEEAFKAVELWLAEKAILPIENS 67 (241)
Q Consensus 38 ~~~~~~s~~~v~~av~~g~~d~gVvPiENS 67 (241)
.++...+..+++..|++|++|+|+|-.-..
T Consensus 222 k~v~~~~v~~~l~~v~~G~aDag~vy~S~a 251 (354)
T 3k6v_A 222 KIMLRSMEVELSSALETGEIDYLYIYRSVA 251 (354)
T ss_dssp TEEEESSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred eeEeCCCHHHHHHHHHcCCCCEEEEEhhhh
Confidence 356678999999999999999999976544
No 195
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=20.95 E-value=2.2e+02 Score=19.82 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=61.5
Q ss_pred eeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHh-cCCCCeEEecCHhhHHhcCCceeecccCCCCCCceeEEE
Q 036073 109 LKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVAS-NGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLV 187 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~-~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~v 187 (241)
|--|=.++....+.+++|.+.+.....+.+..+|.+.+.+ . .++ ..|........-|++++. .+.. ....+.+++
T Consensus 18 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-~~d-lvilD~~l~~~~g~~~~~-~l~~-~~~~~~ii~ 93 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS-TCD-LLIVSDQLVDLSIFSLLD-IVKE-QTKQPSVLI 93 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG-SCS-EEEEETTCTTSCHHHHHH-HHTT-SSSCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC-CCC-EEEEeCCCCCCCHHHHHH-HHHh-hCCCCCEEE
Confidence 3345557888888899998888877777777777777665 3 233 445443333344555443 3333 234688999
Q ss_pred Ee-eCCCCCCCCCCceEEEEEecCCCchHHHHHHHHH
Q 036073 188 LA-RDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVF 223 (241)
Q Consensus 188 l~-~~~~~~~~~~~~ktsi~~~~~~~pGaL~~~L~~f 223 (241)
++ ....... .... ..-++.-|-.+..|...+...
T Consensus 94 ls~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~~ 128 (138)
T 2b4a_A 94 LTTGRHELIE-SSEH-NLSYLQKPFAISELRAAIDYH 128 (138)
T ss_dssp EESCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHHT
T ss_pred EECCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHHH
Confidence 98 6543221 1111 122223355667777777654
No 196
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=20.91 E-value=1.5e+02 Score=20.39 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=47.4
Q ss_pred eeEEEecHHHHHHHHHHHHhcCC-ceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCceeecccCCCC-CCceeEE
Q 036073 109 LKCVLSHPQALASSDIVQTQLGV-ARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDP-DNITRFL 186 (241)
Q Consensus 109 i~~V~SHpqal~Qc~~fl~~~~~-~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~-~N~TRF~ 186 (241)
|=-|=.++......+.+|...+. ....+.|..+|.+.+.+. .+ ...|.....-..-|++++. .+...+ ...+.++
T Consensus 9 ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~-dlvl~D~~l~~~~g~~~~~-~l~~~~~~~~~~ii 85 (129)
T 1p6q_A 9 VLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN-PH-HLVISDFNMPKMDGLGLLQ-AVRANPATKKAAFI 85 (129)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS-CC-SEEEECSSSCSSCHHHHHH-HHTTCTTSTTCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC-CC-CEEEEeCCCCCCCHHHHHH-HHhcCccccCCCEE
Confidence 33455577778888889987777 445566666677766553 23 3455443322334454443 344332 3568888
Q ss_pred EEeeCC
Q 036073 187 VLARDP 192 (241)
Q Consensus 187 vl~~~~ 192 (241)
+++...
T Consensus 86 ~~s~~~ 91 (129)
T 1p6q_A 86 ILTAQG 91 (129)
T ss_dssp ECCSCC
T ss_pred EEeCCC
Confidence 887654
No 197
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=20.35 E-value=57 Score=27.64 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=40.6
Q ss_pred CCCCCccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceecccc
Q 036073 8 PNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYD 77 (241)
Q Consensus 8 ~~~~~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d 77 (241)
..+...+||.+.|+ + +....+.+ +...++. .+.|++.++++|.+|-...|..+-......+...
T Consensus 134 ~~DlkG~KiR~~~~--~--~~~~~~~l-Ga~pv~~-~~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~k 197 (301)
T 2pfy_A 134 LADLKGTRFRAYSA--S--TSHMAALM-GAVPTTV-QTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVK 197 (301)
T ss_dssp GGGGTTCEEEECSH--H--HHHHHHHT-TSEEEEC-CGGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCC
T ss_pred HHHhCCCEEeecCh--h--HHHHHHHc-CCcceec-cHHHHHHHHhcceeeeEecCccccccccHHHHhh
Confidence 33445578887542 2 33333334 4677777 7899999999999999877766544433444433
No 198
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=20.15 E-value=1.6e+02 Score=24.63 Aligned_cols=46 Identities=15% Similarity=-0.008 Sum_probs=33.5
Q ss_pred cEEEEeCCCCcHHHHHHHhh---CC---CCceeecCCHHHHHHHHHcC----CcceE
Q 036073 14 VRISFKGSPGSFTEDAALKA---YP---NCETIPCDEFEEAFKAVELW----LAEKA 60 (241)
Q Consensus 14 ~~ia~LGp~GtfS~~Aa~~~---~~---~~~~~~~~s~~~v~~av~~g----~~d~g 60 (241)
.|||+.+ .||-++.....+ .+ +.+++++.+..+++.++.+| ++|..
T Consensus 119 K~i~~~~-~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~ 174 (321)
T 2x7q_A 119 KRIGVSR-IGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAF 174 (321)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEE
T ss_pred ceEEeeC-CCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEE
Confidence 6899876 467666543222 11 35788888999999999999 99975
Done!