RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 036073
         (241 letters)



>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
           tepidum TLS, structural genomics, PSI-2, protein
           structure initiative; HET: PHE; 2.30A {Chlorobium
           tepidum tls}
          Length = 283

 Score =  292 bits (750), Expect = e-100
 Identities = 97/232 (41%), Positives = 131/232 (56%), Gaps = 11/232 (4%)

Query: 9   NDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSS 68
           N  T   I+++G PG+++E AAL+     E +PC+ F++ F AV    A+ A++PIENS 
Sbjct: 2   NAMTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58

Query: 69  GGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALA-SSDIVQT 127
           GGSIH NYDLLLR  + I+ E       CLL LPG   E     +SHPQAL    +   T
Sbjct: 59  GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFAT 118

Query: 128 QLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLV 187
              +  E   DTA +A+ VA +  + A  +AS RA E+YGL+IL + + D+  NITRF  
Sbjct: 119 HPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178

Query: 188 LARDPIMPRTDKPF-------KTSIVFTLDEGPGVLTKALAVFALREINLTK 232
           +A +     +           KTSIVF L    G L +ALA FALR I+LTK
Sbjct: 179 IAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTK 230


>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
           midwest center for ST genomics, protein structure
           initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
           aurescens}
          Length = 313

 Score =  259 bits (663), Expect = 1e-86
 Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 12  TKVRISFKGSPGSFTEDAALKAY--PNCETIPCDEFEEAFKAVELWLAEKAILPIENSSG 69
           + V  +F G  G+FTE A ++     +   IPC     A + V    A+ A++PIENS  
Sbjct: 5   SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVE 64

Query: 70  GSIHHNYDLLLR-HRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALA-SSDIVQT 127
           G +    D +     L I+ E      F L+A PG+    +K + +H  A A     V  
Sbjct: 65  GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124

Query: 128 QL-GVARENIDDTASAAQYVASN-GLRDAGVVASARAAEIYGLNILADRIQDDPDNITRF 185
            L          TA++A  +  +    +A + A   AAE  GLN+LA+ I D+PD +TRF
Sbjct: 125 HLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRF 184

Query: 186 LVLARDPIMPRTDKPFKTSIVFTL-DEGPGVLTKALAVFALREINLTK 232
           ++++R   +P      KT++V  L ++ PG L + L  FA R +NL++
Sbjct: 185 ILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSR 232


>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
           (PDT), staphylococcus aureu aureus MU50, structural
           genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
           SCOP: c.94.1.1 d.58.18.3
          Length = 267

 Score =  252 bits (645), Expect = 1e-84
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 17/226 (7%)

Query: 14  VRISFKGSPGSFTEDAALKAYPNCET--IPCDEFEEAFKAVELWLAEKAILPIENSSGGS 71
           +++ + G  G+F+  A  + +   E    P     E  KAV        ++PIENS  G+
Sbjct: 4   MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT 63

Query: 72  IHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQ--- 128
           I+   D L +  +   GE++   NF L          +K V S   A++     QT    
Sbjct: 64  INIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAIS-----QTTNYI 118

Query: 129 --LGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFL 186
                  + +D T  +   +          +A   + E YG   +   I+D P N+TRFL
Sbjct: 119 HQHQFDYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFL 174

Query: 187 VLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTK 232
           V+         +      ++  + + PG+L   L  FAL  INL+ 
Sbjct: 175 VIKNQQQFD-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSW 219


>3luy_A Probable chorismate mutase; structural genomics, APC38059,
           3-phenylp PSI-2, protein structure initiative; HET: PPY;
           2.00A {Bifidobacterium adolescentis}
          Length = 329

 Score =  236 bits (603), Expect = 2e-77
 Identities = 51/244 (20%), Positives = 85/244 (34%), Gaps = 33/244 (13%)

Query: 12  TKVRISFKGSPGSFTEDAALKAYP--------NCETIPCDEFEEAFKAVELWLAEKAILP 63
           +  ++ + G  G+FT  AA+ A            + +P D+  +   A +       I+ 
Sbjct: 5   SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHG-DGWGIVA 63

Query: 64  IENSSGGSIHHNYDLLLRHR-LHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASS 122
            EN+  G +  N D L+  + L     V     F      G    + +   +HP  LA  
Sbjct: 64  WENNVEGYVVPNLDALIDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLA-- 121

Query: 123 DIVQTQ-----LGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD 177
              Q +       ++ +     A+A + +             A   E+Y +  +   IQD
Sbjct: 122 ---QCKRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAICGELYDITRIGTAIQD 174

Query: 178 DPDNITRFLVLARDPIMPRTDKPF---------KTSIVFTLDEGPGVLTKALAVFALREI 228
                T FLVL+    + R                  +  L  GPGVL   L VF    +
Sbjct: 175 YQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGL 234

Query: 229 NLTK 232
           N+T 
Sbjct: 235 NMTS 238


>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
           hydroxylase, phosphorylation, intrasteric regulation,
           allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
           d.58.18.3 d.178.1.1 PDB: 2phm_A
          Length = 429

 Score = 71.3 bits (174), Expect = 1e-14
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 162 AAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALA 221
           AA +    +L+ ++ D     +             +++    S++F+L E  G L K L 
Sbjct: 2   AAVVLENGVLSRKLSDFGQETSYI--------EDNSNQNGAISLIFSLKEEVGALAKVLR 53

Query: 222 VFALREINLTKV 233
           +F   +INLT +
Sbjct: 54  LFEENDINLTHI 65


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 52/198 (26%)

Query: 70  GSIHHNYDLLLRHRLHIVGEVQFVANF-CL----LALPGIREEKLKCVLSHPQALASSDI 124
           G   + Y  +L           FV NF C     +    + +E++  ++    A++ +  
Sbjct: 12  GEHQYQYKDILSVFED-----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 125 VQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD---DPDN 181
           +   L   +E +       ++V    LR             Y    L   I+     P  
Sbjct: 67  LFWTLLSKQEEM-----VQKFVEE-VLRIN-----------YKF--LMSPIKTEQRQPSM 107

Query: 182 ITRFLVLARDPI-----------MPRTDKPFK-TSIVFTLDEGPGVLT-------K-ALA 221
           +TR  +  RD +           + R     K    +  L     VL        K  +A
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 222 VFALREINLTKVFVARVY 239
           +       +      +++
Sbjct: 168 LDVCLSYKVQCKMDFKIF 185



 Score = 35.2 bits (80), Expect = 0.021
 Identities = 35/248 (14%), Positives = 78/248 (31%), Gaps = 58/248 (23%)

Query: 2   LTISVTPNDGTKVRISFK------GSPGSFTEDAALKAYPN-CETIPCDEFEEAFKAVEL 54
           + + V  +   + ++ FK       +    + +  L+        I  +    +  +  +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 55  WLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEK------ 108
                  L I      SI      LL+ + +           CLL L  ++  K      
Sbjct: 224 ------KLRIH-----SIQAELRRLLKSKPY---------ENCLLVLLNVQNAKAWNAFN 263

Query: 109 LKC---VLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGL--RDAGVVASARAA 163
           L C   + +  + +       T   ++ ++   T +  +      L  +           
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPR 320

Query: 164 EIYG-----LNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTK 218
           E+       L+I+A+ I+D       +  +  D    +     ++S+   L+  P    K
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSLN-VLE--PAEYRK 373

Query: 219 ---ALAVF 223
               L+VF
Sbjct: 374 MFDRLSVF 381


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 33/244 (13%), Positives = 67/244 (27%), Gaps = 71/244 (29%)

Query: 1   PLTISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAV--ELWLAE 58
           PLT+S     G+ +         SF   + L+          ++F +            +
Sbjct: 8   PLTLS----HGS-LEHVLLVPTASFFIASQLQ----------EQFNKILPEPTEGFAADD 52

Query: 59  KAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSH--P 116
           +   P E            L+ +        + +V++    +  G  ++ L   L+    
Sbjct: 53  EPTTPAE------------LVGKF-------LGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93

Query: 117 QALASSDI---VQTQLGVARENIDDTASAAQ--YVA------------SNGLRDAGVVAS 159
             L  +DI       L      +  T    +    A            ++ L  A     
Sbjct: 94  CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA---VG 150

Query: 160 ARAAEIYGL-----NI------LADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFT 208
              A++  +     N       L D  Q     +   +  + + +            VFT
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210

Query: 209 --LD 210
             L+
Sbjct: 211 QGLN 214



 Score = 39.3 bits (91), Expect = 9e-04
 Identities = 54/298 (18%), Positives = 87/298 (29%), Gaps = 117/298 (39%)

Query: 6   VTPNDGTKVRISFKGSPGSFTED---AALKAYPNCETIPCDEFEEAF-KAVEL--WL--- 56
            TP +   +R   KG+ G  ++    A   A  +      + F  +  KA+ +  ++   
Sbjct: 258 FTPGE---LRSYLKGATGH-SQGLVTAVAIAETDSW----ESFFVSVRKAITVLFFIGVR 309

Query: 57  -----AEKAILP------IENSSGG-----SI-------------HHNYDLLLRHRLHIV 87
                   ++ P      +EN+ G      SI               N  L    ++ I 
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369

Query: 88  ---GEVQFV--------ANFCLL-----ALPGI-------REEKLKCVLS--------HP 116
              G    V            L      A  G+        E KLK            H 
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429

Query: 117 QALASS-DIVQTQLGVARENIDDTASAAQ---YVASNGLRDAGVVASARAAEIYGLNILA 172
             L  + D++   L   + N+   A   Q   Y   +G  D                   
Sbjct: 430 HLLVPASDLINKDL--VKNNVSFNAKDIQIPVYDTFDG-SD------------------- 467

Query: 173 DRIQDDPDNITRFLV--LARDPI-MPRTDKPFKTSIVFTLDEGPG------VLTKALA 221
             ++    +I+  +V  + R P+    T +   T I   LD GPG      VLT    
Sbjct: 468 --LRVLSGSISERIVDCIIRLPVKWETTTQFKATHI---LDFGPGGASGLGVLTHRNK 520



 Score = 35.4 bits (81), Expect = 0.015
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 76/194 (39%)

Query: 16   ISFKGSPG-----SFT-------EDAALKAYPNCETIPCDEF-------EEAFKAVELWL 56
             +F+   G      FT       E AA +   +   IP D         E  + A    L
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE--YAA----L 1770

Query: 57   AEKA-ILPIENSSGGSIHHNYDL--LLRHRLHIVGEVQFVA---------NFCLLAL-PG 103
            A  A ++ IE            L  ++ +R    G    VA         N+ ++A+ PG
Sbjct: 1771 ASLADVMSIE-----------SLVEVVFYR----GMTMQVAVPRDELGRSNYGMIAINPG 1815

Query: 104  -----IREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAG-VV 157
                   +E L+ V+       +  +V+    +   N+++     QYVA      AG + 
Sbjct: 1816 RVAASFSQEALQYVVERVGK-RTGWLVE----IVNYNVENQ----QYVA------AGDLR 1860

Query: 158  ASARAAEIYGLNIL 171
            A      +  LN +
Sbjct: 1861 ALDTVTNV--LNFI 1872



 Score = 35.0 bits (80), Expect = 0.019
 Identities = 40/246 (16%), Positives = 77/246 (31%), Gaps = 62/246 (25%)

Query: 17  SFKGSPGSFTEDAA--LKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIEN---SSGGS 71
           ++    G   + +A  L             F +    +  WL   +  P ++   S   S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPIS 237

Query: 72  IHHNYDLLLRHRLHIVGEVQFVANFCLLA-----LPGIREEKLKCVLSHPQALASSDIVQ 126
                         ++G +Q  A++ + A      PG     LK    H Q L ++  + 
Sbjct: 238 ------------CPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284

Query: 127 TQLGVARENIDDTASAA-QYVASNGLRDAGVVASARAAEIYGLNILADRI-QDDPDN--- 181
                + E+   +   A   +   G+         R  E Y    L   I +D  +N   
Sbjct: 285 E--TDSWESFFVSVRKAITVLFFIGV---------RCYEAYPNTSLPPSILEDSLENNEG 333

Query: 182 -------ITRFLVLARDPIMPRTDK-----PFKTSIVFTLDEGPG--VLT---KALAVF- 223
                  I+    L ++ +    +K     P    +  +L  G    V++   ++L    
Sbjct: 334 VPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390

Query: 224 -ALREI 228
             LR+ 
Sbjct: 391 LTLRKA 396


>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
           structural genomics, joint center for structural
           genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
           sibiricum}
          Length = 357

 Score = 28.4 bits (64), Expect = 2.1
 Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 6/83 (7%)

Query: 150 GLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFL--VLARDPIMPRTDKPFKTSIVF 207
            L           +  Y   +  DR+    +   + L       P +  T +   +++  
Sbjct: 236 DLISLYPYI---VSADYYYELRKDRMGQYYEQ-AKQLAEQFNALPGVHTTPEVPVSNMFH 291

Query: 208 TLDEGPGVLTKALAVFALREINL 230
              +G              E  L
Sbjct: 292 LHFDGQAADISPKLEQVQEETGL 314


>1qft_A Protein (female-specific histamine binding protein 2); lipocalin,
           ligand binding protein; 1.25A {Rhipicephalus
           appendiculatus} SCOP: b.60.1.1 PDB: 1qfv_A 3gaq_A 3g7x_A
          Length = 175

 Score = 27.9 bits (61), Expect = 2.5
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 16  ISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63
             ++   G    D    +  NC+ I     +   +  ELW  +   +P
Sbjct: 98  FRYETEDGQVFTDVIAYSDDNCDVIYVPGTDGNEEGYELWTTDYDNIP 145


>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
           2.88A {Mus musculus}
          Length = 291

 Score = 27.7 bits (62), Expect = 3.5
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   PLTISVTPNDGTKVRISFKGSPGSFT 26
           P +++V+   G KV +S K S   F 
Sbjct: 166 PSSLAVSA--GEKVTMSCKSSQSLFN 189


>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
           0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
           1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
           1dak_A* 1dam_A* 1dbs_A 1dts_A
          Length = 224

 Score = 27.4 bits (61), Expect = 4.0
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 24/100 (24%)

Query: 104 IREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAA 163
           + +E+L  +L          +V  +LG     I+     AQ +   GL  AG VA+    
Sbjct: 134 VTQEQLPVIL----------VVGVKLGC----INHAMLTAQVIQHAGLTLAGWVANDVTP 179

Query: 164 EIYGLNILADRIQDDPDNITRFL---VLARDPIMPRTDKP 200
                     R  +    +TR +   +L   P +    + 
Sbjct: 180 P-------GKRHAEYMTTLTRMIPAPLLGEIPWLAENPEN 212


>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
           signaling protein; 2.04A {Bordetella pertussis} PDB:
           3mpl_A
          Length = 267

 Score = 27.3 bits (61), Expect = 4.7
 Identities = 7/31 (22%), Positives = 10/31 (32%)

Query: 23  GSFTEDAALKAYPNCETIPCDEFEEAFKAVE 53
            S       + YP  + +  D   EA   V 
Sbjct: 147 NSAAIPLLQRRYPQAKVVTADNPSEAMLMVA 177


>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics;
           2.25A {Sinorhizobium meliloti}
          Length = 427

 Score = 27.4 bits (60), Expect = 4.9
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 2   LTISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAI 61
           L+I     DG  +      +PG+     AL  Y   E+I        F         +  
Sbjct: 175 LSIKFVGEDGQTIEHDVYDAPGA---GVALAMYNLDESI------TEFARASFNYGLQRK 225

Query: 62  LPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANF 96
           +P+  S+  +I   YD   +     V + +F A F
Sbjct: 226 VPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF 260


>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
           two (beta/ALFA)4 domains, metal transport; 1.70A
           {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
           2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
          Length = 284

 Score = 26.6 bits (59), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 104 IREEKLKCVLSHPQALASSDIVQTQLGVARE 134
           + E+K  CV + PQ      +V++   VAR 
Sbjct: 219 LVEQKATCVFAEPQ--FRPAVVES---VARG 244


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,826,635
Number of extensions: 239481
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 29
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)