RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 036073
(241 letters)
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
aureus [TaxId: 1280]}
Length = 184
Score = 147 bits (371), Expect = 5e-45
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 8/185 (4%)
Query: 15 RISFKGSPGSFTEDAALKAYPNCET--IPCDEFEEAFKAVELWLAEKAILPIENSSGGSI 72
++ + G G+F+ A + + E P E KAV ++PIENS G+I
Sbjct: 2 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61
Query: 73 HHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVA 132
+ D L + + GE++ NF L +K V S A++ QT +
Sbjct: 62 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAIS-----QTTNYIH 116
Query: 133 RENIDDTASAAQYVASNGL-RDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARD 191
+ D + + + +A + E YG + I+D P N+TRFLV+
Sbjct: 117 QHQFDYDYVDSTIQSLTKIENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQ 176
Query: 192 PIMPR 196
+
Sbjct: 177 QQFDQ 181
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 48.7 bits (116), Expect = 2e-08
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 193 IMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
I +++ S++F+L E G L K L +F +INLT +
Sbjct: 7 IEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHI 47
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
domain {Staphylococcus aureus [TaxId: 1280]}
Length = 80
Score = 38.2 bits (89), Expect = 7e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 203 TSIVFTLDEGPGVLTKALAVFALREINLTKV 233
++ + + PG+L L FAL INL+ +
Sbjct: 3 MFLITPMHDKPGLLASVLNTFALFNINLSWI 33
>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable
domain, VL-lambda {Human (Homo sapiens), cluster 1
[TaxId: 9606]}
Length = 111
Score = 27.3 bits (60), Expect = 0.80
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 1 PLTISVTPNDGTKVRISFKGSPGSFT 26
P ++S +P G V IS S G+
Sbjct: 7 PHSVSESP--GKTVTISCTRSSGNID 30
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 25.7 bits (56), Expect = 3.0
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 44 EFEEAFKAVELWLAEK-AILPIENSSGGSIHHNYDLLLRHR 83
+F + E W K IL ++ S+ LL +H
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHE 58
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 324
Score = 26.4 bits (58), Expect = 3.5
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 137 DDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARD 191
+ AA++V + A +A IL +R +D + + V ++
Sbjct: 141 VPESEAARFVDAEK-----GFADVKAVLEGAKYILMERFAEDATLLDKLRVFMKN 190
>d1ty0a2 d.15.6.1 (A:104-211) Streptococcal pyrogenic exotoxin
Spe-J {Streptococcus pyogenes [TaxId: 1314]}
Length = 108
Score = 25.1 bits (55), Expect = 4.3
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 3 TISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFE 46
+ + N + + S T K Y + +TI +F
Sbjct: 56 QLEIAINGNKHESFNLYDATSSSTRSDIFKKYKDNKTINMKDFS 99
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 25.9 bits (56), Expect = 4.5
Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 11/183 (6%)
Query: 15 RISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHH 74
FKG GS +A + + E + + +L + G +
Sbjct: 34 EAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNA 93
Query: 75 NYDLLLRHRLHIVG---EVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGV 131
+ + G E + L + + I +
Sbjct: 94 RRLVRKLEDRGVAGACLEDKLFPKTNSLHDG-------RAQPLADIEEFALKIKACKDSQ 146
Query: 132 ARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARD 191
+ A ++A GL +A + + IL + DP +I F+ +
Sbjct: 147 TDPDFCIVARVEAFIAGWGLDEA-LKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNN 205
Query: 192 PIM 194
Sbjct: 206 QGP 208
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 70
Score = 24.2 bits (53), Expect = 4.8
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 206 VFTLDEGPGVLTKALAVFALREINLTKVFVA 236
+F ++ G LT+ V A INL+ + +A
Sbjct: 8 IFLENK-SGRLTEVTEVLAKENINLSALCIA 37
>d1an8a2 d.15.6.1 (A:96-208) Streptococcal superantigen Spe-C
{Streptococcus pyogenes [TaxId: 1314]}
Length = 113
Score = 24.7 bits (54), Expect = 5.9
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 3 TISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEE 47
I + DG +I SP T Y + I F
Sbjct: 62 RIEIGTKDGKHEQIDLFDSPNEGTRSDIFAKYKDNRIINMKNFSH 106
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 23.8 bits (52), Expect = 7.3
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 202 KTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARV 238
+ I ++ G L++ +F+ R N+ + VA
Sbjct: 2 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPT 38
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 78
Score = 23.6 bits (51), Expect = 9.3
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 213 PGVLTKALAVFALREINLTKVFVAR 237
PG L K + +N+ ++
Sbjct: 14 PGALGKIGTLLGTAGVNIQAAQLSE 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 886,308
Number of extensions: 40487
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 13
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)