Query 036074
Match_columns 285
No_of_seqs 209 out of 1119
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 1.1E-38 2.4E-43 327.9 20.5 213 20-284 7-220 (823)
2 KOG0498 K+-channel ERG and rel 100.0 7.3E-34 1.6E-38 291.3 16.4 202 31-284 33-252 (727)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 3.9E-29 8.4E-34 250.9 12.1 185 37-284 185-371 (971)
4 KOG0500 Cyclic nucleotide-gate 99.7 6E-18 1.3E-22 167.6 7.9 142 80-283 3-147 (536)
5 KOG0499 Cyclic nucleotide-gate 99.6 1.2E-14 2.6E-19 147.3 12.3 158 64-283 218-380 (815)
6 PF08412 Ion_trans_N: Ion tran 98.8 6.2E-09 1.3E-13 81.4 3.7 41 61-101 34-74 (77)
7 PF00520 Ion_trans: Ion transp 98.6 1.1E-07 2.5E-12 77.9 6.2 86 198-283 27-114 (200)
8 KOG3713 Voltage-gated K+ chann 96.6 0.039 8.4E-07 56.1 13.5 23 104-126 240-262 (477)
9 KOG2302 T-type voltage-gated C 94.7 0.13 2.9E-06 56.8 8.7 64 61-125 1102-1177(1956)
10 KOG1545 Voltage-gated shaker-l 93.9 0.16 3.5E-06 50.8 6.9 46 205-250 290-342 (507)
11 KOG2301 Voltage-gated Ca2+ cha 89.4 0.96 2.1E-05 52.1 7.3 74 198-276 501-575 (1592)
12 KOG2301 Voltage-gated Ca2+ cha 78.9 9.9 0.00022 44.3 9.3 50 76-125 842-893 (1592)
13 PF00520 Ion_trans: Ion transp 54.1 21 0.00046 29.0 4.2 23 108-130 1-23 (200)
14 PLN03223 Polycystin cation cha 41.7 2.2E+02 0.0048 33.7 10.6 58 68-125 1170-1234(1634)
15 KOG4390 Voltage-gated A-type K 32.5 4 8.6E-05 41.7 -4.0 47 198-245 256-303 (632)
16 KOG1420 Ca2+-activated K+ chan 20.8 2.1E+02 0.0046 31.2 5.8 20 107-126 165-184 (1103)
17 KOG1419 Voltage-gated K+ chann 20.6 1.1E+02 0.0025 32.6 3.8 24 104-127 125-148 (654)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.1e-38 Score=327.93 Aligned_cols=213 Identities=62% Similarity=0.988 Sum_probs=186.0
Q ss_pred CCCCCCCCCCcCCCcccccccccccCCCCCCCCCcccccc-cCcCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 036074 20 HHPKNNHLREEEGDDASLSLRNLSKLILPPLGVSSYNQNQ-TKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFL 98 (285)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~r~~~~~~lp~~g~~~~~q~~-~~s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~ 98 (285)
.......+++++.|+.++|+||+|+.+||++|.++++++. ...+|+|+|+|+++++||++++++++|++|++||+++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~ 86 (823)
T PLN03192 7 AGGGRGKGTGEEDDSGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL 86 (823)
T ss_pred cccCCCCCCcccCCCcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 3445566688899999999999999999999999766555 456999999999999999999999999999999999998
Q ss_pred ccCCCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccceeeccCCCCcccccccccCCCC
Q 036074 99 HSSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPL 178 (285)
Q Consensus 99 ~~~~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (285)
...+...+.++|.++|++|++||+++|++||++++++++|+|+++|+.
T Consensus 87 ~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~-------------------------------- 134 (823)
T PLN03192 87 NASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAV-------------------------------- 134 (823)
T ss_pred CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHH--------------------------------
Confidence 766666789999999999999999999999999998899999999999
Q ss_pred ccccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036074 179 DALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNS 258 (285)
Q Consensus 179 ~~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s 258 (285)
||+|+||++|++|++|++++.+++.++.+....+.+++++|++|+.|+.++++++++....
T Consensus 135 -------------------~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~ 195 (823)
T PLN03192 135 -------------------RYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRF 195 (823)
T ss_pred -------------------HHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887765555678899999999999999999988754321
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhcC
Q 036074 259 CMNPFRTVRNFIHFFFVLIYYLGCDS 284 (285)
Q Consensus 259 ~~n~~~~i~~lI~~~~ll~H~~aCl~ 284 (285)
. ....++.++++++++++||.||++
T Consensus 196 ~-~~~~~~~kli~~~l~~~H~~aC~~ 220 (823)
T PLN03192 196 S-YFWIRCARLLSVTLFLVHCAGCLY 220 (823)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123357778889999999999986
No 2
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-34 Score=291.34 Aligned_cols=202 Identities=36% Similarity=0.604 Sum_probs=165.4
Q ss_pred CCCcccccccccccCCCC-CCCCCcc-cccccCcCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhccccC-------
Q 036074 31 EGDDASLSLRNLSKLILP-PLGVSSY-NQNQTKSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS------- 101 (285)
Q Consensus 31 ~~~~~~~~~r~~~~~~lp-~~g~~~~-~q~~~~s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~~~------- 101 (285)
.+.+...+...++...+| ..|..++ +|+..+++|||+|+|++++.||++++++++|++|+.|++++|....
T Consensus 33 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d 112 (727)
T KOG0498|consen 33 KSAESTPSVNSLSLGLLPLGLGVPEYKERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCID 112 (727)
T ss_pred ccccccCCcccccccccccccCcchhhcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccccc
Confidence 344455666777777787 3454443 4555567999999999999999999999999999999999998874
Q ss_pred --CCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccceeeccCCCCcccccccccCCCCc
Q 036074 102 --PDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLD 179 (285)
Q Consensus 102 --~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (285)
....+.++|.++|++|++||+++|+|||+++.+.++|.|||+||.
T Consensus 113 ~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~--------------------------------- 159 (727)
T KOG0498|consen 113 GKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAK--------------------------------- 159 (727)
T ss_pred ccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHH---------------------------------
Confidence 335688999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcC-----CccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036074 180 ALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITG-----NKKAALSYSLLGILRFWRLRRVKQLFTSKYG 254 (285)
Q Consensus 180 ~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g-----~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~ 254 (285)
||+|+||++|++|++|+|++..+..+ .........++.+.||+||+|+.++++++++
T Consensus 160 ------------------rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k 221 (727)
T KOG0498|consen 160 ------------------RYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEK 221 (727)
T ss_pred ------------------HHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999765442 2122245688999999999999999999876
Q ss_pred hhhccCc--hHHHHHHHHHHHHHHHHHHhhcC
Q 036074 255 WHNSCMN--PFRTVRNFIHFFFVLIYYLGCDS 284 (285)
Q Consensus 255 ~~~s~~n--~~~~i~~lI~~~~ll~H~~aCl~ 284 (285)
....... .+. +.++++++++++||.||+|
T Consensus 222 ~~~~v~~~awa~-~a~ll~~~~l~sH~~gc~w 252 (727)
T KOG0498|consen 222 DTGFVYETAWAG-AALLLSVYLLASHWAGCIW 252 (727)
T ss_pred HhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5432221 122 5567889999999999987
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=250.85 Aligned_cols=185 Identities=25% Similarity=0.490 Sum_probs=157.1
Q ss_pred ccccccccCCCCCCCCCcccccccC-cCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhccccC-CCchhHhHHHHHH
Q 036074 37 LSLRNLSKLILPPLGVSSYNQNQTK-SKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS-PDKKLYIADSIVD 114 (285)
Q Consensus 37 ~~~r~~~~~~lp~~g~~~~~q~~~~-s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~~~-~~~~~~~~d~ivD 114 (285)
...-|++.-|+|. |.|+..| +..||-.+..++-.|||.++++.+|+|+.+||.++|.... .+..|..+|.++|
T Consensus 185 a~vm~Lg~DilPQ-----YrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVD 259 (971)
T KOG0501|consen 185 AEVMQLGSDILPQ-----YRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVD 259 (971)
T ss_pred HHHHHhccccchh-----hhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhh
Confidence 3457888899998 5777666 4889999999999999999999999999999999999877 4567999999999
Q ss_pred HHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccceeeccCCCCcccccccccCCCCccccccccchhhhhhh
Q 036074 115 LFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNA 194 (285)
Q Consensus 115 l~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 194 (285)
++|++||+|||+|.|+-+++ ++|.|||.|..
T Consensus 260 VIF~vDIvLNFHTTFVGPgG-EVvsdPkvIRm------------------------------------------------ 290 (971)
T KOG0501|consen 260 VIFFVDIVLNFHTTFVGPGG-EVVSDPKVIRM------------------------------------------------ 290 (971)
T ss_pred hhhhhhhhhhcceeeecCCC-ceecChhHHhH------------------------------------------------
Confidence 99999999999999999986 79999999999
Q ss_pred hcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHH
Q 036074 195 TVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFF 274 (285)
Q Consensus 195 ~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ 274 (285)
+|+|+||++|++|++|+|.+..+-......+..++-|+..||+||-|+.+-.+...+...+. +..++|++.
T Consensus 291 ---NYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~------LvLLlC~y~ 361 (971)
T KOG0501|consen 291 ---NYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAV------LVLLLCVYG 361 (971)
T ss_pred ---HHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHH
Confidence 99999999999999999998643222222345667888889999999998888776654432 345789999
Q ss_pred HHHHHHhhcC
Q 036074 275 VLIYYLGCDS 284 (285)
Q Consensus 275 ll~H~~aCl~ 284 (285)
+.+||+||+|
T Consensus 362 lvAHWlACiW 371 (971)
T KOG0501|consen 362 LVAHWLACIW 371 (971)
T ss_pred HHHHHHHHhh
Confidence 9999999998
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.72 E-value=6e-18 Score=167.64 Aligned_cols=142 Identities=24% Similarity=0.420 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhhhhhhccccCCC--chhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhccccce
Q 036074 80 MVLLVAYSAWVYPFEFAFLHSSPD--KKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAISAGKLH 157 (285)
Q Consensus 80 ~vll~~y~a~~iPf~vaF~~~~~~--~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~~~~~~ 157 (285)
+.+.++|+.|+++.+.+|..-.+. ..|..+|++.|++|++|++++.++||.++| ++|+|-++...
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~----------- 69 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRK----------- 69 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHH-----------
Confidence 345689999999999999875532 468899999999999999999999999987 89999999888
Q ss_pred eeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccch-hhHHHhhhhchHHHHHHhhcCCccchhhHHHHHH
Q 036074 158 FFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKT-WFLMDVASTIPFEAIGYLITGNKKAALSYSLLGI 236 (285)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt-~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~l 236 (285)
||.++ .|.+|++|.+|+|++.... + ..++.|+
T Consensus 70 ----------------------------------------hY~~s~~f~lD~l~liP~D~l~~~~-~------~~~~~r~ 102 (536)
T KOG0500|consen 70 ----------------------------------------HYVHSTQFKLDVLSLIPLDLLLFKD-G------SASLERL 102 (536)
T ss_pred ----------------------------------------HHHHhhhhhhhhhhhcchhHHhhcC-C------cchHHHH
Confidence 99876 7999999999999986433 2 2356678
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHhhc
Q 036074 237 LRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCD 283 (285)
Q Consensus 237 LRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ll~H~~aCl 283 (285)
.||+|+.|+.+++++.++.. ...|.| ++.++++++++++||.||+
T Consensus 103 nRllk~yRl~~F~~rTetrT-~~Pn~f-ri~~lv~~~~ilfHWNaCl 147 (536)
T KOG0500|consen 103 NRLLKIYRLFEFFDRTETRT-TYPNAF-RISKLVHYCLILFHWNACL 147 (536)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCchHH-HHHHHHHHHHHHHHHhhHH
Confidence 89999999999999987755 355666 5788999999999999996
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.58 E-value=1.2e-14 Score=147.28 Aligned_cols=158 Identities=16% Similarity=0.367 Sum_probs=122.5
Q ss_pred eEECCCC-hhHHHHHHHHHHHHHHHHHHhhhhhhccccCCC--chhHhHHHHHHHHHHHHHh-hhheeeeeecCccEEEe
Q 036074 64 WIISPMD-SRYRCWETFMVLLVAYSAWVYPFEFAFLHSSPD--KKLYIADSIVDLFFAIDIF-LTFFVAYIHRRSQLLVR 139 (285)
Q Consensus 64 ~iI~P~s-~~~r~We~~~vll~~y~a~~iPf~vaF~~~~~~--~~~~~~d~ivDl~F~iDI~-L~F~tay~~~~~~~lV~ 139 (285)
-.|+|+. +.|..|-.++.+...|++|++|++.+|....++ ..|.+.|+++|+++++|++ ++.+.-|...| .+|.
T Consensus 218 ~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~ik 295 (815)
T KOG0499|consen 218 NSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DIIK 295 (815)
T ss_pred cccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eEEE
Confidence 3699998 899999999999999999999999999887644 3689999999999999995 57888888654 6898
Q ss_pred ChhhhhhchhhhccccceeeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccch-hhHHHhhhhchHHHHH
Q 036074 140 EPKKIALRKVAISAGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKT-WFLMDVASTIPFEAIG 218 (285)
Q Consensus 140 d~k~Ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt-~F~iDlissiP~d~i~ 218 (285)
|.+.+.. ||+++ -|-+|++|.+|+|+++
T Consensus 296 ~kndtrk---------------------------------------------------~Yl~sr~FklDllsiLPldllY 324 (815)
T KOG0499|consen 296 DKNDTRK---------------------------------------------------HYLTSRKFKLDLLSILPLDLLY 324 (815)
T ss_pred echHHHH---------------------------------------------------HHHHhhhhhhhHHhhhhHHHHH
Confidence 9888887 99987 6999999999999986
Q ss_pred HhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHhhc
Q 036074 219 YLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVLIYYLGCD 283 (285)
Q Consensus 219 ~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ll~H~~aCl 283 (285)
.. .|.. -++|+.|++++--..++++.++....+. ..+|-++ -..++++++|..||+
T Consensus 325 ~~-~G~~------p~wR~~R~lK~~sF~e~~~~Le~i~s~~-y~~RV~r-T~~YmlyilHinacv 380 (815)
T KOG0499|consen 325 LF-FGFN------PMWRANRMLKYTSFFEFNHHLESIMSKA-YIYRVIR-TTGYLLYILHINACV 380 (815)
T ss_pred HH-hccc------hhhhhhhHHHHHHHHHHHHHHHHHhcch-hhhhhHH-HHHHHHHHHhhhHHH
Confidence 44 4421 2345555555555556666665544221 2234344 468899999999996
No 6
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.76 E-value=6.2e-09 Score=81.37 Aligned_cols=41 Identities=27% Similarity=0.714 Sum_probs=38.4
Q ss_pred CcCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhhccccC
Q 036074 61 KSKWIISPMDSRYRCWETFMVLLVAYSAWVYPFEFAFLHSS 101 (285)
Q Consensus 61 ~s~~iI~P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~~~ 101 (285)
...|+|||+|.++.+||.+|+++++++++++|+.++|..+.
T Consensus 34 ~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 34 SGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred CCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 34799999999999999999999999999999999998775
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.58 E-value=1.1e-07 Score=77.90 Aligned_cols=86 Identities=24% Similarity=0.440 Sum_probs=51.7
Q ss_pred cccch-hhHHHhhhhchHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Q 036074 198 RYIKT-WFLMDVASTIPFEAIGYLITGNKK-AALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFV 275 (285)
Q Consensus 198 ~Ylkt-~F~iDlissiP~d~i~~l~~g~~~-~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~l 275 (285)
+|+++ |.++|+++.+|..........+.. .....++++++|+.|+.|+.+.++...+........++.+.+++..+++
T Consensus 27 ~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (200)
T PF00520_consen 27 RYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFI 106 (200)
T ss_dssp CCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccccccccccccccccccccccccccccc
Confidence 88886 788999999999655433222210 0123455555666666665555544433332222345567777788888
Q ss_pred HHHHHhhc
Q 036074 276 LIYYLGCD 283 (285)
Q Consensus 276 l~H~~aCl 283 (285)
+.|..||.
T Consensus 107 ~~~~~a~~ 114 (200)
T PF00520_consen 107 VLLFFACI 114 (200)
T ss_dssp HHHHHHHH
T ss_pred ccccccch
Confidence 88888885
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.039 Score=56.09 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.3
Q ss_pred chhHhHHHHHHHHHHHHHhhhhe
Q 036074 104 KKLYIADSIVDLFFAIDIFLTFF 126 (285)
Q Consensus 104 ~~~~~~d~ivDl~F~iDI~L~F~ 126 (285)
..+.+++.++-..|-+..+++|.
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~ 262 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFL 262 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999994
No 9
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.70 E-value=0.13 Score=56.81 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=43.4
Q ss_pred CcCeEECCCChhHH---------HHHHHHHHHHHHHHHHhhhhhhccccCCCchhH---hHHHHHHHHHHHHHhhhh
Q 036074 61 KSKWIISPMDSRYR---------CWETFMVLLVAYSAWVYPFEFAFLHSSPDKKLY---IADSIVDLFFAIDIFLTF 125 (285)
Q Consensus 61 ~s~~iI~P~s~~~r---------~We~~~vll~~y~a~~iPf~vaF~~~~~~~~~~---~~d~ivDl~F~iDI~L~F 125 (285)
-++++++|.++++. ..|.+++++++.+++++..+= |..+.-...|+ .-++|.-.+|.+++.++-
T Consensus 1102 Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer-p~i~~~s~EriFltlsnyIFtaIfV~Em~lKV 1177 (1956)
T KOG2302|consen 1102 WSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER-PAIVEGSTERIFLTLSNYIFTAIFVVEMTLKV 1177 (1956)
T ss_pred HHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc-cccccCcceEEEEEecchHHHHHHHHHHHHHH
Confidence 35678999998764 467777888888888887652 33333222232 234888889999988875
No 10
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=93.92 E-value=0.16 Score=50.83 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=29.9
Q ss_pred HHHhhhhchHHHHH-H-hhcC---C--ccchhhHHHHHHHHHHHHHHHHHHHH
Q 036074 205 LMDVASTIPFEAIG-Y-LITG---N--KKAALSYSLLGILRFWRLRRVKQLFT 250 (285)
Q Consensus 205 ~iDlissiP~d~i~-~-l~~g---~--~~~~~~~~lL~lLRL~RL~Rv~~lf~ 250 (285)
++|+++.+|+..-. . +... . .+.+.+..+||.+||.|.+|+.++..
T Consensus 290 iIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSR 342 (507)
T KOG1545|consen 290 IIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSR 342 (507)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeecc
Confidence 89999999986432 1 1111 1 12345677888888888888876553
No 11
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.39 E-value=0.96 Score=52.15 Aligned_cols=74 Identities=19% Similarity=0.426 Sum_probs=53.1
Q ss_pred ccc-chhhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Q 036074 198 RYI-KTWFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFVL 276 (285)
Q Consensus 198 ~Yl-kt~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~ll 276 (285)
.|. ++|-++|.+-.. ++.+... ......+++||.+|++|+.|+.+....+.....+..|+.+.+.+|..++++.
T Consensus 501 ~yF~~~~n~fD~~iv~-l~~~~~~----~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~ 575 (1592)
T KOG2301|consen 501 NYFRRGWNIFDLIIVL-LSLLELL----LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIF 575 (1592)
T ss_pred HHHhhhcchheEEEEe-hhhHHhc----ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 554 568899988777 6655432 1234567899999999999999999888887777777777666655444433
No 12
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.87 E-value=9.9 Score=44.27 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCC--CchhHhHHHHHHHHHHHHHhhhh
Q 036074 76 WETFMVLLVAYSAWVYPFEFAFLHSSP--DKKLYIADSIVDLFFAIDIFLTF 125 (285)
Q Consensus 76 We~~~vll~~y~a~~iPf~vaF~~~~~--~~~~~~~d~ivDl~F~iDI~L~F 125 (285)
-+.+++.++..+....+++=...+..+ ...+..+|.+.-.+|.+.++++.
T Consensus 842 f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ 893 (1592)
T KOG2301|consen 842 FEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKW 893 (1592)
T ss_pred HHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665555544444433 23467899999999999999988
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=54.10 E-value=21 Score=28.97 Aligned_cols=23 Identities=35% Similarity=0.649 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHhhhheeeee
Q 036074 108 IADSIVDLFFAIDIFLTFFVAYI 130 (285)
Q Consensus 108 ~~d~ivDl~F~iDI~L~F~tay~ 130 (285)
++|.+.|++|.+|+++++++...
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~ 23 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF 23 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999985554
No 14
>PLN03223 Polycystin cation channel protein; Provisional
Probab=41.71 E-value=2.2e+02 Score=33.68 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhccc-------cCCCchhHhHHHHHHHHHHHHHhhhh
Q 036074 68 PMDSRYRCWETFMVLLVAYSAWVYPFEFAFLH-------SSPDKKLYIADSIVDLFFAIDIFLTF 125 (285)
Q Consensus 68 P~s~~~r~We~~~vll~~y~a~~iPf~vaF~~-------~~~~~~~~~~d~ivDl~F~iDI~L~F 125 (285)
+.+-++..-|++.+++++|+++.--.++.=.. ..-...|-++|+++-++.++=|++-|
T Consensus 1170 t~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1170 YEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888877665542111 00124688899888888877777654
No 15
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=32.45 E-value=4 Score=41.71 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=28.2
Q ss_pred cccch-hhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHH
Q 036074 198 RYIKT-WFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRV 245 (285)
Q Consensus 198 ~Ylkt-~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv 245 (285)
|++++ .=++|+++.+|+ +++...+.|...+..+--||.+|.+|+++.
T Consensus 256 rF~RSvMSiIDVvAIlPY-YigLv~t~N~DVSGaFVTLRVFRVFRIFKF 303 (632)
T KOG4390|consen 256 RFLRSVMSIIDVVAILPY-YIGLVMTDNEDVSGAFVTLRVFRVFRIFKF 303 (632)
T ss_pred HHHHHHHHHHHHhhhhhh-heEEEecCCccccceeEEEEeeeeeeeeee
Confidence 55777 568999999998 455566666544333333444444444443
No 16
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.83 E-value=2.1e+02 Score=31.22 Aligned_cols=20 Identities=25% Similarity=0.570 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHhhhhe
Q 036074 107 YIADSIVDLFFAIDIFLTFF 126 (285)
Q Consensus 107 ~~~d~ivDl~F~iDI~L~F~ 126 (285)
.-+|+..+++|++=++++|.
T Consensus 165 qqidlafnifflvyffirfi 184 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFI 184 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHh
Confidence 46889999999998888883
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=20.62 E-value=1.1e+02 Score=32.63 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=19.8
Q ss_pred chhHhHHHHHHHHHHHHHhhhhee
Q 036074 104 KKLYIADSIVDLFFAIDIFLTFFV 127 (285)
Q Consensus 104 ~~~~~~d~ivDl~F~iDI~L~F~t 127 (285)
+.++++++++-++|.++.+++.-+
T Consensus 125 ~~L~~LEiv~IV~Fg~EfivRlWS 148 (654)
T KOG1419|consen 125 GILYILEIVMIVFFGLEFIVRLWS 148 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999998643
Done!