Query 036074
Match_columns 285
No_of_seqs 209 out of 1119
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 99.2 2.9E-11 9.8E-16 104.4 7.8 140 74-283 8-150 (223)
2 2r9r_B Paddle chimera voltage 98.8 1.1E-08 3.6E-13 100.6 8.3 62 67-128 174-263 (514)
3 1ors_C Potassium channel; volt 98.1 1.2E-05 4E-10 65.6 8.9 54 74-127 6-60 (132)
4 3beh_A MLL3241 protein; transm 98.0 2E-06 6.9E-11 78.6 2.2 77 198-283 68-146 (355)
5 2kyh_A KVAP, voltage-gated pot 97.6 7.5E-05 2.6E-09 62.6 6.0 53 75-127 22-75 (147)
6 4dxw_A Navrh, ION transport pr 97.4 0.00016 5.3E-09 62.5 5.8 52 74-126 12-64 (229)
7 3rvy_A ION transport protein; 97.4 0.00011 3.7E-09 65.6 4.4 53 74-126 30-83 (285)
8 2a9h_A Voltage-gated potassium 69.3 3.4 0.00012 34.4 3.4 13 202-214 14-26 (155)
9 1orq_C Potassium channel; volt 39.3 28 0.00097 29.1 4.1 17 231-247 99-115 (223)
10 2ih3_C Voltage-gated potassium 29.0 38 0.0013 26.5 3.0 13 234-246 4-16 (122)
11 1ors_C Potassium channel; volt 27.0 41 0.0014 26.6 2.9 19 198-217 66-84 (132)
12 4dxw_A Navrh, ION transport pr 20.7 82 0.0028 26.4 3.8 50 198-254 71-121 (229)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.19 E-value=2.9e-11 Score=104.43 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc-cCCCchhHhHHHHHHHHHHHHHhhhheeeeeecCccEEEeChhhhhhchhhhc
Q 036074 74 RCWETFMVLLVAYSAWVYPFEFAFLH-SSPDKKLYIADSIVDLFFAIDIFLTFFVAYIHRRSQLLVREPKKIALRKVAIS 152 (285)
Q Consensus 74 r~We~~~vll~~y~a~~iPf~vaF~~-~~~~~~~~~~d~ivDl~F~iDI~L~F~tay~~~~~~~lV~d~k~Ia~~~~~~~ 152 (285)
..||.++.++++++++.+..+..... +.....+..+|.++|++|.+|+++++.++. + ..
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~----------~----~~------ 67 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG----------D----PA------ 67 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS----------C----HH------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc----------c----HH------
Confidence 35999999999999998888754322 223456889999999999999999997752 0 12
Q ss_pred cccceeeccCCCCcccccccccCCCCccccccccchhhhhhhhcccccchhhHHHhhhhchHHHHHHhhcCCccchhhHH
Q 036074 153 AGKLHFFLGSGYGATVVPCYSCIQPLDALGFVKSTDIQWLNATVARYIKTWFLMDVASTIPFEAIGYLITGNKKAALSYS 232 (285)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Ylkt~F~iDlissiP~d~i~~l~~g~~~~~~~~~ 232 (285)
+|+|+ +++|+++.+|++.... .+. +. ...+
T Consensus 68 ---------------------------------------------~y~~~-~iiDllailP~~~~~~--~~~-~~-~~~~ 97 (223)
T 1orq_C 68 ---------------------------------------------GYVKK-TLYEIPALVPAGLLAL--IEG-HL-AGLG 97 (223)
T ss_dssp ---------------------------------------------HHHHH-HHHHCTTHHHHHHHHH--HHH-HH-HTTT
T ss_pred ---------------------------------------------HHHHH-hHHHHHHHHHHHHHHH--Hhc-ch-hHHH
Confidence 89988 9999999999987643 111 00 0012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchH--HHHHHHHHHHHHHHHHHhhc
Q 036074 233 LLGILRFWRLRRVKQLFTSKYGWHNSCMNPF--RTVRNFIHFFFVLIYYLGCD 283 (285)
Q Consensus 233 lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~--~~i~~lI~~~~ll~H~~aCl 283 (285)
.+|.+|++|+.|+.++++...+......+.+ .++..++..++++.|+.||.
T Consensus 98 ~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFA 150 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554432111110000111 12444556667777888885
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.78 E-value=1.1e-08 Score=100.62 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=45.9
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHHHHhhhhhh--cccc-------------------------CCCchhHhHHHHHHHHHH
Q 036074 67 SPMD-SRYRCWETFMVLLVAYSAWVYPFEFA--FLHS-------------------------SPDKKLYIADSIVDLFFA 118 (285)
Q Consensus 67 ~P~s-~~~r~We~~~vll~~y~a~~iPf~va--F~~~-------------------------~~~~~~~~~d~ivDl~F~ 118 (285)
+|.| ...+.++.+++++++.+.++..++-- +..+ .....+.++|.+++++|.
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFt 253 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFS 253 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 4664 56789999999999998888766532 2111 013457889999999999
Q ss_pred HHHhhhheee
Q 036074 119 IDIFLTFFVA 128 (285)
Q Consensus 119 iDI~L~F~ta 128 (285)
+|+++++.++
T Consensus 254 iE~ilR~~~~ 263 (514)
T 2r9r_B 254 FEFLVRFFAC 263 (514)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999999653
No 3
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.10 E-value=1.2e-05 Score=65.64 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCC-CchhHhHHHHHHHHHHHHHhhhhee
Q 036074 74 RCWETFMVLLVAYSAWVYPFEFAFLHSSP-DKKLYIADSIVDLFFAIDIFLTFFV 127 (285)
Q Consensus 74 r~We~~~vll~~y~a~~iPf~vaF~~~~~-~~~~~~~d~ivDl~F~iDI~L~F~t 127 (285)
+.+|.+++++++.+...+-.+---..+.. ...+..+|.++-.+|.+|.++++.+
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~ 60 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK 60 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999998888887776643222211 2346789999999999999999954
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=97.97 E-value=2e-06 Score=78.59 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=42.2
Q ss_pred cccc-hhhHHHhhhh-chHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Q 036074 198 RYIK-TWFLMDVAST-IPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYGWHNSCMNPFRTVRNFIHFFFV 275 (285)
Q Consensus 198 ~Ylk-t~F~iDliss-iP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~~~~s~~n~~~~i~~lI~~~~l 275 (285)
+|.+ .|.++|+++. +|+..+. ..+. ...+++|++|++|+.|..+.++.+.+..... ...+..++..+++
T Consensus 68 ~~~~~~~~i~Dl~~i~~p~~~~~--~~~~----~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~---~~~l~~~~~~~~~ 138 (355)
T 3beh_A 68 VRDRTPKIAIDVLAVLVPLAAFL--LDGS----PDWSLYCAVWLLKPLRDSTFFPVLGRVLANE---ARNLIGVTTLFGV 138 (355)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH--SCCS----GGGGGGGGGGGSHHHHTCSSHHHHHHHHHHT---HHHHHHHHHHHHH
T ss_pred eeccCcchHHHHHHHHHHHHHHH--hccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4544 5899999998 6987643 2221 2235566666666665543333333222111 1234445556667
Q ss_pred HHHHHhhc
Q 036074 276 LIYYLGCD 283 (285)
Q Consensus 276 l~H~~aCl 283 (285)
+.|+.||+
T Consensus 139 ~~~~~a~~ 146 (355)
T 3beh_A 139 VLFAVALA 146 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77888875
No 5
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.62 E-value=7.5e-05 Score=62.63 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCC-CchhHhHHHHHHHHHHHHHhhhhee
Q 036074 75 CWETFMVLLVAYSAWVYPFEFAFLHSSP-DKKLYIADSIVDLFFAIDIFLTFFV 127 (285)
Q Consensus 75 ~We~~~vll~~y~a~~iPf~vaF~~~~~-~~~~~~~d~ivDl~F~iDI~L~F~t 127 (285)
.||.++.++.+.++.++-.+.....+.. ...+..+|.++-++|.+|.++++..
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~ 75 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK 75 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888877765543321 2246789999999999999999954
No 6
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.44 E-value=0.00016 Score=62.53 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccC-CCchhHhHHHHHHHHHHHHHhhhhe
Q 036074 74 RCWETFMVLLVAYSAWVYPFEFAFLHSS-PDKKLYIADSIVDLFFAIDIFLTFF 126 (285)
Q Consensus 74 r~We~~~vll~~y~a~~iPf~vaF~~~~-~~~~~~~~d~ivDl~F~iDI~L~F~ 126 (285)
+.+|.++.++++.+++..-.+- ...+. .+..+..+|.+.-++|.+|++++..
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~ 64 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFI 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988765543 11111 1134677899999999999999983
No 7
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.40 E-value=0.00011 Score=65.55 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc-CCCchhHhHHHHHHHHHHHHHhhhhe
Q 036074 74 RCWETFMVLLVAYSAWVYPFEFAFLHS-SPDKKLYIADSIVDLFFAIDIFLTFF 126 (285)
Q Consensus 74 r~We~~~vll~~y~a~~iPf~vaF~~~-~~~~~~~~~d~ivDl~F~iDI~L~F~ 126 (285)
+.++.++.++++.++..+.++-.-... .....+..+|.++-++|.+|+++++.
T Consensus 30 ~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~ 83 (285)
T 3rvy_A 30 SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIY 83 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888876655311011 11234678899999999999999984
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=69.26 E-value=3.4 Score=34.38 Aligned_cols=13 Identities=8% Similarity=-0.227 Sum_probs=0.0
Q ss_pred hhhHHHhhhhchH
Q 036074 202 TWFLMDVASTIPF 214 (285)
Q Consensus 202 t~F~iDlissiP~ 214 (285)
.+-++|+++++|+
T Consensus 14 ~~~~~dli~~lp~ 26 (155)
T 2a9h_A 14 IEGRGRLIKHMPP 26 (155)
T ss_dssp -------------
T ss_pred hhhHHHHHHHHHH
Confidence 4568899999987
No 9
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=39.27 E-value=28 Score=29.13 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036074 231 YSLLGILRFWRLRRVKQ 247 (285)
Q Consensus 231 ~~lL~lLRL~RL~Rv~~ 247 (285)
.+.+|++|++|+.|+.+
T Consensus 99 lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 99 FRLVRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666643
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=29.03 E-value=38 Score=26.49 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 036074 234 LGILRFWRLRRVK 246 (285)
Q Consensus 234 L~lLRL~RL~Rv~ 246 (285)
+|.+|++|+.|+.
T Consensus 4 lr~lRl~Ri~ri~ 16 (122)
T 2ih3_C 4 MLSGLLARLVKLL 16 (122)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 11
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=26.97 E-value=41 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.6
Q ss_pred cccchhhHHHhhhhchHHHH
Q 036074 198 RYIKTWFLMDVASTIPFEAI 217 (285)
Q Consensus 198 ~Ylkt~F~iDlissiP~d~i 217 (285)
+|.+ |=++|+++.+|+..-
T Consensus 66 ~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 66 GYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp TTTT-TCGGGTGGGSCHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 8888 889999999998643
No 12
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=20.72 E-value=82 Score=26.39 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=21.4
Q ss_pred cccch-hhHHHhhhhchHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036074 198 RYIKT-WFLMDVASTIPFEAIGYLITGNKKAALSYSLLGILRFWRLRRVKQLFTSKYG 254 (285)
Q Consensus 198 ~Ylkt-~F~iDlissiP~d~i~~l~~g~~~~~~~~~lL~lLRL~RL~Rv~~lf~~~~~ 254 (285)
+|.|+ |=++|++..+|.-. +.. .+.....+|++|++|+.|+.+.......
T Consensus 71 ~y~~~~wni~D~~~v~~~~i-----~~~--~~~~~~~lr~~RilR~lrl~~~~~~l~~ 121 (229)
T 4dxw_A 71 DFFKSGWNIFDTVIVAISLI-----PIP--NNSSFLVLRLLRIFRVLRLISVIPELKQ 121 (229)
T ss_dssp ----CHHHHHHHHHHHHTTC-----C----------CCTTHHHHHHTTHHHHCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHh-----hcC--ccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88875 88999877665421 111 0112234455555555555554444433
Done!