BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036075
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 93/209 (44%), Gaps = 18/209 (8%)
Query: 108 FSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKN-LETLPSTIDGLK 166
+F + + HL ++ + LP + + GL L L +N L LP++I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 167 SLRNLYLSGCSKLKSMP---------GNFGKVESLEVLDL--SGCKGPPLSSSWYLPFLI 215
LR L + C +L +P G + +L+ L L +G + P S + L L
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLK 209
Query: 216 SLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSK-NSFI 274
SL R S ALG P++ L L +LDL P G LK L L ++ +
Sbjct: 210 SLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLL 267
Query: 275 TLPASINRLFNLEKLELEDCKRLQSMPQL 303
TLP I+RL LEKL+L C L +P L
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 21/169 (12%)
Query: 39 LTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKC---------LSELLLDGTDIKEL 88
L LP I + L+ L + C + E + S L L L+ T I+ L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 89 PKHKRSKISS--NFESFWPFQFSEFSEIMTSMEHLL---ELHLEG-TAIRGLPVSIEHLT 142
P + I++ N +S + S S + ++ HL EL L G TA+R P
Sbjct: 199 P----ASIANLQNLKSL-KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 143 GLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVES 191
L L L+DC NL TLP I L L L L GC L +P ++ +
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 1 MPNFEELDLGGCTRLREIHPTXXXXXXXXXXXXXDCKSLTTLP-DKICMESLKILVLSGC 59
+P EELDL GCT LR P DC +L TLP D + L+ L L GC
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 60 RKFKNFREIVGS 71
++
Sbjct: 288 VNLSRLPSLIAQ 299
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 186 FGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLDL 243
F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 244 SDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------- 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 108 VETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 294 CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 166 CTDLRVLHQMP 176
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 107 QFSEFSEIMTSMEHLLELHLEGTAIR-GLPVSIEHLTGLVLLNLRDCKNLET-LPSTIDG 164
Q SEFS + S+ +L+ L + T R L+ L +L + E LP
Sbjct: 410 QMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 165 LKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLS 198
L++L L LS C + P F + SL+VL++S
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 141 LTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKS-MPGNFGKVESLEVLDLSG 199
L L+ L++ +GL SL L ++G S ++ +P F ++ +L LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 200 CKGPPLSSSWY 210
C+ LS + +
Sbjct: 480 CQLEQLSPTAF 490
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 186 FGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLDL 243
F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 244 SDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------- 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 132 VETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
Query: 294 CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 190 CTDLRVLHQMP 200
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 107 QFSEFSEIMTSMEHLLELHLEGTAIR-GLPVSIEHLTGLVLLNLRDCKNLET-LPSTIDG 164
Q SEFS + S+ +L+ L + T R L+ L +L + E LP
Sbjct: 434 QMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 165 LKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLS 198
L++L L LS C + P F + SL+VL++S
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 141 LTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKS-MPGNFGKVESLEVLDLSG 199
L L+ L++ +GL SL L ++G S ++ +P F ++ +L LDLS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 200 CKGPPLSSSWY 210
C+ LS + +
Sbjct: 504 CQLEQLSPTAF 514
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 186 FGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLDL 243
F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 244 SDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------- 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 108 VETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 294 CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 166 CTDLRVLHQMP 176
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 115 MTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLS 174
+ +EHL H + V + L L+ L++ +GL SL L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 175 GCSKLKS-MPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLS 233
G S ++ +P F ++ +L LDLS C+ LS P A F SLS
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-----------------PTA--FNSLS 494
Query: 234 GLCSLRKLDLSDSNLGEGAIPNDI-GNLCSLKELYLSKN 271
SL+ L+++ + L ++P+ I L SL++++L N
Sbjct: 495 ---SLQVLNMASNQL--KSVPDGIFDRLTSLQKIWLHTN 528
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 185 NFGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLD 242
+F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 243 LSDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------ 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 107 AVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 294 -CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 165 YCTDLRVLHQMP 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 185 NFGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLD 242
+F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 243 LSDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------ 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 108 AVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Query: 294 -CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 166 YCTDLRVLHQMP 177
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 185 NFGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLD 242
+F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 243 LSDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------ 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 109 AVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Query: 294 -CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 167 YCTDLRVLHQMP 178
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 185 NFGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLD 242
+F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 243 LSDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------ 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 108 AVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Query: 294 -CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 166 YCTDLRVLHQMP 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 185 NFGKVESLEVLDLSGCKGPPLSSSWY--LPFLISLMRRCSDPMALGFPSLSGLCSLRKLD 242
+F L+VLDLS C+ + Y L L +L+ + +L + SGL SL+KL
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 243 LSDSNLGEGAIPN-DIGNLCSLKELYLSKN--SFITLPASINRLFNLEKLELED------ 293
++NL ++ N IG+L +LKEL ++ N LP + L NLE L+L
Sbjct: 109 ALETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Query: 294 -CKRLQSMPQLP 304
C L+ + Q+P
Sbjct: 167 YCTDLRVLHQMP 178
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Query: 117 SMEHLLELHLEGTAIRGLPVSIEHLTGLVLL---NLRDCKNLETL-PSTIDGLKSLRNLY 172
S +L L L A+ G+ + TGL LL +L D L + P+T GL L L+
Sbjct: 53 SCRNLTILWLHSNALAGIDAAA--FTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 173 LSGCSKLKSMPGNFGKVESLEVLDL--SGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP 230
L C + PG F + +L+ L L + + P ++ L L L + ++
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 231 SLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASI-NRLFNLEKL 289
+ GL SL +L L +++ P+ +L L LYL N+ LPA + L +L+ L
Sbjct: 171 AFRGLHSLDRLLLHQNHVAR-VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYL 229
Query: 290 ELED 293
L D
Sbjct: 230 RLND 233
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 32/197 (16%)
Query: 49 ESLKILVLSGCRKFKN--FREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPF 106
++ K+LVLS C F I + + L EL L +D+ ++ H S + S
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189
Query: 107 ---------QFSEFSEIMTSMEHLLELHLE--------GTAIRGLPVSIEHLTGLVLLNL 149
FS ++T +L L L T ++ P E TG +
Sbjct: 190 NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249
Query: 150 R------------DCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDL 197
R CK L L D + + S CS+L ++ ++ V+S +++ L
Sbjct: 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309
Query: 198 SGCKGPPLSSSWYLPFL 214
C+ P L W L ++
Sbjct: 310 L-CQCPKLQRLWVLDYI 325
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 232 LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNS 272
LSG SLRKL++ D G+ A+ + L +++ L++S S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 29/147 (19%)
Query: 231 SLSGLCSLRKLDLSDSNLGEGAIPND-IGNLCSLKELYLSKNSFITLPA-SINRLFNLEK 288
+ +GL SL L+L D+ L +P L L+EL+L N ++P+ + NR+ +L +
Sbjct: 78 AFNGLPSLNTLELFDNRLT--TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRR 135
Query: 289 LELEDCKRLQSMPQLPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGCNG 348
L+L + KRL+ I E G +L L+ L +CN + I N
Sbjct: 136 LDLGELKRLE-------YISEAAFEGLVNLRYLN--LGMCNLKDIP------------NL 174
Query: 349 FAFSMLKEYLEVMSNPKQKFDIVVPGS 375
A L+E LE+ N + D++ PGS
Sbjct: 175 TALVRLEE-LELSGN---RLDLIRPGS 197
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 75 LSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGL 134
L EL L I+ +P + +++ S + + E + +E++ E EG
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPS-------LRRLDLGE-LKRLEYISEAAFEGL----- 155
Query: 135 PVSIEHLTGLVLLNLRDCKNLETL-----------------PSTIDGLKSLRNLYLSGCS 177
V++ +L L + NL+D NL L P + GL SLR L+L
Sbjct: 156 -VNLRYL-NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 178 KLKSMPGNFGKVESLEVLDLS 198
F ++SLE L+LS
Sbjct: 214 VATIERNAFDDLKSLEELNLS 234
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 29/147 (19%)
Query: 231 SLSGLCSLRKLDLSDSNLGEGAIPND-IGNLCSLKELYLSKNSFITLPA-SINRLFNLEK 288
+ +GL SL L+L D+ L +P L L+EL+L N ++P+ + NR+ +L +
Sbjct: 78 AFNGLPSLNTLELFDNRLT--TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRR 135
Query: 289 LELEDCKRLQSMPQLPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGCNG 348
L+L + KRL+ I E G +L L+ L +CN + I N
Sbjct: 136 LDLGELKRLE-------YISEAAFEGLVNLRYLN--LGMCNLKDIP------------NL 174
Query: 349 FAFSMLKEYLEVMSNPKQKFDIVVPGS 375
A L+E LE+ N + D++ PGS
Sbjct: 175 TALVRLEE-LELSGN---RLDLIRPGS 197
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 75 LSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGL 134
L EL L I+ +P + +++ S + + E + +E++ E EG
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPS-------LRRLDLGE-LKRLEYISEAAFEGL----- 155
Query: 135 PVSIEHLTGLVLLNLRDCKNLETL-----------------PSTIDGLKSLRNLYLSGCS 177
V++ +L L + NL+D NL L P + GL SLR L+L
Sbjct: 156 -VNLRYL-NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 178 KLKSMPGNFGKVESLEVLDLS 198
F ++SLE L+LS
Sbjct: 214 VATIERNAFDDLKSLEELNLS 234
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 129 TAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGN-FG 187
A++ L +S +T + +LR C NL+ L LKS S++ ++ G+ F
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLI-----LKS---------SRINTIEGDAFY 71
Query: 188 KVESLEVLDLSGCKGPPLSSSWYLPF----LISLMRRCSDPMALG--FPSLSGLCSLR 239
+ SLE LDLS LSSSW+ P ++LM + + FP+L+ L +LR
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 129 TAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGN-FG 187
A++ L +S +T + +LR C NL+ L LKS S++ ++ G+ F
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLI-----LKS---------SRINTIEGDAFY 97
Query: 188 KVESLEVLDLSGCKGPPLSSSWYLPF----LISLMRRCSDPMALG--FPSLSGLCSLR 239
+ SLE LDLS LSSSW+ P ++LM + + FP+L+ L +LR
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 155
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 130 AIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKV 189
A++ L +S +T + +L+ C NL+ L T +G+ ++ +F +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-------------EDSFSSL 99
Query: 190 ESLEVLDLSGCKGPPLSSSWYLPF-LISLMRRCSDPM-ALGFPSL-SGLCSLRKLDLSDS 246
SLE LDLS LSSSW+ P ++ + +P LG SL S L L+ L + +
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 247 NLGEGAIPNDIGNLCSLKELYLSKNSFITL-PASINRLFNLEKLEL 291
+ D L L+EL + + + P S+ + N+ L L
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 130 AIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKV 189
A++ L +S +T + +L+ C NL+ L T +G+ ++ +F +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-------------DSFSSL 73
Query: 190 ESLEVLDLSGCKGPPLSSSWYLPF-LISLMRRCSDPM-ALGFPSL-SGLCSLRKLDLSDS 246
SLE LDLS LSSSW+ P ++ + +P LG SL S L L+ L + +
Sbjct: 74 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 133
Query: 247 NLGEGAIPNDIGNLCSLKELYLSKNSFITL-PASINRLFNLEKLEL 291
+ D L L+EL + + + P S+ + N+ L L
Sbjct: 134 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 29/147 (19%)
Query: 151 DCKNLETLPSTI-DGLKSLRNLYLSGCSKLKSMP-GNFGKVESLEVLDLSGCKGPPLSSS 208
+ +L++LP+ + D L SL LYL G +KL+S+P G F K+ SL L+LS +
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQ------- 87
Query: 209 WYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDI-GNLCSLKELY 267
L SL D L L++L L+ + L ++P+ + L LK+L
Sbjct: 88 -----LQSLPNGVFDK----------LTQLKELALNTNQL--QSLPDGVFDKLTQLKDLR 130
Query: 268 LSKNSFITLPASI-NRLFNLEKLELED 293
L +N ++P + +RL +L+ + L D
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 241 LDLSDSNLGEGAIPNDI-GNLCSLKELYLSKNSFITLPASI-NRLFNLEKLELEDCKRLQ 298
LDL ++L ++PN + L SL +LYL N +LP + N+L +L L L +LQ
Sbjct: 33 LDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQ 89
Query: 299 SMP 301
S+P
Sbjct: 90 SLP 92
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 232 LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLEL 291
+ L +LR LDLS + L ++P ++G+ LK Y N TLP L NL+ L +
Sbjct: 266 IKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323
Query: 292 E 292
E
Sbjct: 324 E 324
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 241 LDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSM 300
LDLS NL I +I L LYL+ NS LPA I L NL L+L RL S+
Sbjct: 229 LDLS--NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285
Query: 301 P 301
P
Sbjct: 286 P 286
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 23/103 (22%)
Query: 251 GAIPNDIGNLC----SLKELYLSKNSFITLPA----------SINRLF-------NLEKL 289
A N+I +LC SL+EL +S N I LPA S N L NL++L
Sbjct: 303 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQL 362
Query: 290 ELEDCKRLQSMPQLPPSIEEVRVNG-CASLETLSGALKLCNSE 331
+E L+ P +P S+E++R+N A + L LK + E
Sbjct: 363 HVE-YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 96/238 (40%), Gaps = 23/238 (9%)
Query: 123 ELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSM 182
EL L + LP HL LV C +L LP LKSL L + LK++
Sbjct: 75 ELELNNLGLSSLPELPPHLESLV----ASCNSLTELPELPQSLKSL----LVDNNNLKAL 126
Query: 183 PGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLI----SLMRRCSDPMALGFPSLSGLCSL 238
+E L V + K P L +S +L + SL + P +L F + +G L
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA-AGNNQL 185
Query: 239 RKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLEL-----ED 293
+L + AI D +L L +L LS S + + L L+ L D
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 294 CKRLQSMPQLPPSIE--EVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGCNGF 349
L+++P LPPS+E VR N L L +L + +S N L L N +
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD---VSENIFSGLSELPPNLY 300
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 239 RKLDLSDSNLGEGAIPND-IGNLCSLKELYLSKNSFITLPASI-NRLFNLEKLELEDCKR 296
+KLDL + L ++P+ L L+ LYL+ N TLPA I L NLE L + D K
Sbjct: 40 KKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK- 96
Query: 297 LQSMP 301
LQ++P
Sbjct: 97 LQALP 101
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 42/182 (23%)
Query: 121 LLELHLEGTAIRG-LPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKL 179
L EL+L+ G +P ++ + + LV L+L T+PS++ L LR+L L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 180 KSMPGNFGKVESLE--VLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGLC 236
+P V++LE +LD + G PS LS
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGE-------------------------IPSGLSNCT 487
Query: 237 SLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDCK 295
+L + LS++ L G IP IG L +L L LS NSF +PA EL DC+
Sbjct: 488 NLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPA-----------ELGDCR 535
Query: 296 RL 297
L
Sbjct: 536 SL 537
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 42/182 (23%)
Query: 121 LLELHLEGTAIRG-LPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKL 179
L EL+L+ G +P ++ + + LV L+L T+PS++ L LR+L L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 180 KSMPGNFGKVESLE--VLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGLC 236
+P V++LE +LD + G PS LS
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGE-------------------------IPSGLSNCT 490
Query: 237 SLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDCK 295
+L + LS++ L G IP IG L +L L LS NSF +PA EL DC+
Sbjct: 491 NLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPA-----------ELGDCR 538
Query: 296 RL 297
L
Sbjct: 539 SL 540
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 34/199 (17%)
Query: 134 LPVSIEHLTGLVLLNLRDCKNL-ETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESL 192
+P S+ +L L L + NL +P I L L LY++ + ++P ++++L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 193 EVLD-----LSGCKGPPLSSSWYLPFLISLM---RRCSDPMALGFPSLSGLCS------- 237
LD LSG P +SS LP L+ + R S + + S S L +
Sbjct: 128 VTLDFSYNALSGTLPPSISS---LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 238 --------------LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRL 283
L +DLS N+ EG G+ + ++++L+KNS +
Sbjct: 185 RLTGKIPPTFANLNLAFVDLS-RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 284 FNLEKLELEDCKRLQSMPQ 302
NL L+L + + ++PQ
Sbjct: 244 KNLNGLDLRNNRIYGTLPQ 262
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 37/173 (21%)
Query: 137 SIEHLTGLVLLNLRDCKNLETLPSTI-DGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVL 195
S + + L L+L C+ +ET+ GL L NL L+G PG+F + SLE L
Sbjct: 51 SFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Query: 196 DLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPN 255
K L S FP + L +L+KL+++ + + +P
Sbjct: 110 VAVETKLASLES---------------------FP-IGQLITLKKLNVAHNFIHSCKLPA 147
Query: 256 DIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLPPSIE 308
NL +L + LS N ++ + + D + L+ PQ+ S++
Sbjct: 148 YFSNLTNLVHVDLSYNY-------------IQTITVNDLQFLRENPQVNLSLD 187
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 37/173 (21%)
Query: 137 SIEHLTGLVLLNLRDCKNLETLPSTI-DGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVL 195
S + + L L+L C+ +ET+ GL L NL L+G PG+F + SLE L
Sbjct: 46 SFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 104
Query: 196 DLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPN 255
K L S FP + L +L+KL+++ + + +P
Sbjct: 105 VAVETKLASLES---------------------FP-IGQLITLKKLNVAHNFIHSCKLPA 142
Query: 256 DIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLPPSIE 308
NL +L + LS N ++ + + D + L+ PQ+ S++
Sbjct: 143 YFSNLTNLVHVDLSYNY-------------IQTITVNDLQFLRENPQVNLSLD 182
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 153 KNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLP 212
KN+++ PS L++L L LS + +E LE+LDL
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----------- 515
Query: 213 FLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDI-GNLCSLKELYLSKN 271
L L + + + F L GL L L+L + E IP ++ +L LK + L N
Sbjct: 516 -LARLWKHANPGGPIYF--LKGLSHLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLN 570
Query: 272 SFITLPASI-NRLFNLEKLELE 292
+ TLPAS+ N +L+ L L+
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQ 592
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 153 KNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLP 212
KN+++ PS L++L L LS + +E LE+LDL
Sbjct: 472 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----------- 520
Query: 213 FLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDI-GNLCSLKELYLSKN 271
L L + + + F L GL L L+L + E IP ++ +L LK + L N
Sbjct: 521 -LARLWKHANPGGPIYF--LKGLSHLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLN 575
Query: 272 SFITLPASI-NRLFNLEKLELE 292
+ TLPAS+ N +L+ L L+
Sbjct: 576 NLNTLPASVFNNQVSLKSLNLQ 597
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 114 IMTSMEHLLELHLEGTAIRGLPVSI-EHLTGLVLLNLRDCKNLETLP-STIDGLKSLRNL 171
+ + +L +L+ + +P + + LT L L+L D +L+++P D LKSL ++
Sbjct: 52 VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHI 110
Query: 172 YL 173
YL
Sbjct: 111 YL 112
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 153 KNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLP 212
KN+++ PS L++L L LS + +E LE+LDL
Sbjct: 477 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----------- 525
Query: 213 FLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDI-GNLCSLKELYLSKN 271
L L + + + F L GL L L+L + E IP ++ +L LK + L N
Sbjct: 526 -LARLWKHANPGGPIYF--LKGLSHLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLN 580
Query: 272 SFITLPASI-NRLFNLEKLELE 292
+ TLPAS+ N +L+ L L+
Sbjct: 581 NLNTLPASVFNNQVSLKSLNLQ 602
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 107 QFSEFSEIMTSMEHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLETLPSTIDGL 165
QF+ + +++ +HL + L I L S ++T L+ L L + P T DGL
Sbjct: 42 QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101
Query: 166 KSLRNLYLSGCSKLKSMP-GNFGKVESLEVLDLSG 199
KSLR L L G + + +P G F + +L L +
Sbjct: 102 KSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 161 TIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLS-GCKGPPLSSSWY-LPFLISLM 218
+ LK L+ L L+ K F +++L+VL+LS G SS++Y LP + +
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 219 RRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA 278
+ + + + L L+ LDL D+ L I + S+ +++LS N +TLP
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 279 ----------SINRLFNLEKLELEDCKRLQSMPQLPPSI-EEVRVNGCASLET 320
S NRL NL+ L L +P L I + R + C+ +T
Sbjct: 399 INLTANLIHLSENRLENLDILYF-----LLRVPHLQILILNQNRFSSCSGDQT 446
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 107 QFSEFSEIMTSMEHLLELHLEGTAIR-GLPVSIEHLTGLVLLNLRDCKNLET-LPSTIDG 164
Q SEFS + S+ +L+ L + T R L+ L +L + E LP
Sbjct: 115 QMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 165 LKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLS 198
L++L L LS C + P F + SL+VL++S
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 232 LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLEL 291
LS L L L L D+ + + +P + L L+ LYLSKN L A + L NL+ LEL
Sbjct: 149 LSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLEL 204
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 36/144 (25%)
Query: 129 TAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGK 188
T ++ L ++ HL GL PS I+G+ SL+ L L+ S + N
Sbjct: 277 TRVQELDLTAAHLNGL--------------PSGIEGMNSLKKLVLNANSFDQLCQINAAS 322
Query: 189 VESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNL 248
SL L + G MR+ + LG L L +L+KLDLS S++
Sbjct: 323 FPSLRDLYIKGN-----------------MRK----LDLGTRCLEKLENLQKLDLSHSDI 361
Query: 249 GEGAIPN-DIGNLCSLKELYLSKN 271
N + NL L+ L LS N
Sbjct: 362 EASDCCNLQLKNLRHLQYLNLSYN 385
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,920,402
Number of Sequences: 62578
Number of extensions: 561555
Number of successful extensions: 1166
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 125
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)