Query 036075
Match_columns 474
No_of_seqs 441 out of 4275
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 7.4E-29 2.5E-33 261.7 21.1 331 1-347 205-598 (636)
2 3t6q_A CD180 antigen; protein- 100.0 3.2E-27 1.1E-31 248.4 25.6 313 1-316 56-460 (606)
3 2id5_A Lingo-1, leucine rich r 100.0 4.6E-27 1.6E-31 239.9 25.9 298 14-345 22-329 (477)
4 4eco_A Uncharacterized protein 100.0 3E-28 1E-32 257.0 17.5 306 1-316 248-598 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.2E-27 7.4E-32 255.6 22.4 331 1-347 447-838 (876)
6 3rgz_A Protein brassinosteroid 100.0 6.1E-28 2.1E-32 260.3 17.2 336 1-345 268-713 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 4.5E-27 1.6E-31 253.2 19.9 306 1-316 490-838 (876)
8 3rgz_A Protein brassinosteroid 99.9 9.6E-28 3.3E-32 258.8 14.7 332 1-346 177-548 (768)
9 4fmz_A Internalin; leucine ric 99.9 7.3E-26 2.5E-30 221.2 22.4 296 1-347 43-344 (347)
10 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-27 1.3E-31 227.0 12.8 245 26-319 50-305 (313)
11 3vq2_A TLR4, TOLL-like recepto 99.9 2E-26 6.7E-31 242.3 19.2 85 2-86 56-141 (606)
12 3t6q_A CD180 antigen; protein- 99.9 1.5E-25 5.2E-30 235.5 25.9 228 113-347 272-511 (606)
13 3v47_A TOLL-like receptor 5B a 99.9 2.8E-26 9.6E-31 232.6 19.3 313 2-345 30-404 (455)
14 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-26 4.7E-31 240.5 17.0 152 2-153 26-183 (549)
15 2z7x_B TOLL-like receptor 1, v 99.9 5.6E-26 1.9E-30 234.4 20.4 298 5-316 3-410 (520)
16 1o6v_A Internalin A; bacterial 99.9 1.2E-25 4.3E-30 228.6 22.3 271 3-315 47-341 (466)
17 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-25 9.6E-30 224.8 24.1 298 2-346 42-349 (457)
18 3o6n_A APL1; leucine-rich repe 99.9 2.8E-25 9.5E-30 220.7 21.5 314 1-361 44-363 (390)
19 4fmz_A Internalin; leucine ric 99.9 4.2E-25 1.4E-29 215.8 20.9 274 1-316 65-344 (347)
20 1o6v_A Internalin A; bacterial 99.9 7E-25 2.4E-29 223.0 22.9 278 23-321 43-324 (466)
21 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-25 1.1E-29 233.0 20.9 281 4-316 263-556 (606)
22 3v47_A TOLL-like receptor 5B a 99.9 3.5E-25 1.2E-29 224.5 19.2 292 1-316 53-406 (455)
23 2z7x_B TOLL-like receptor 1, v 99.9 5.5E-25 1.9E-29 227.0 20.6 152 163-346 321-478 (520)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.5E-25 2.5E-29 228.2 20.7 143 3-154 32-181 (562)
25 2id5_A Lingo-1, leucine rich r 99.9 7.9E-25 2.7E-29 223.4 19.8 287 2-316 32-331 (477)
26 2z63_A TOLL-like receptor 4, v 99.9 2.5E-25 8.6E-30 232.0 16.2 221 112-345 275-527 (570)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-24 6.2E-29 225.2 22.3 151 163-345 350-506 (562)
28 3j0a_A TOLL-like receptor 5; m 99.9 2E-24 6.8E-29 235.2 23.3 311 2-315 24-391 (844)
29 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-24 2.9E-28 205.3 24.8 281 3-345 34-329 (332)
30 3oja_B Anopheles plasmodium-re 99.9 2E-24 6.9E-29 226.4 21.4 311 2-359 51-367 (597)
31 1ogq_A PGIP-2, polygalacturona 99.9 3.9E-25 1.3E-29 212.9 14.7 251 2-301 50-308 (313)
32 4fcg_A Uncharacterized protein 99.9 2.3E-24 7.9E-29 208.8 20.1 128 141-294 182-311 (328)
33 2z63_A TOLL-like receptor 4, v 99.9 1.2E-24 4E-29 226.9 18.0 332 2-347 28-456 (570)
34 3j0a_A TOLL-like receptor 5; m 99.9 5.2E-24 1.8E-28 232.0 22.4 308 1-314 47-410 (844)
35 3o6n_A APL1; leucine-rich repe 99.9 4.5E-24 1.5E-28 212.0 19.8 281 24-348 43-330 (390)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-23 5.9E-28 211.7 23.1 283 19-347 35-329 (457)
37 2z81_A CD282 antigen, TOLL-lik 99.9 8.5E-24 2.9E-28 219.5 21.3 312 2-322 5-426 (549)
38 3zyj_A Leucine-rich repeat-con 99.9 4.7E-23 1.6E-27 208.0 26.2 239 27-315 44-289 (440)
39 4fcg_A Uncharacterized protein 99.9 4.7E-24 1.6E-28 206.6 16.6 207 48-303 80-296 (328)
40 1jl5_A Outer protein YOPM; leu 99.9 3.7E-24 1.3E-28 216.4 15.8 281 2-315 11-307 (454)
41 1xku_A Decorin; proteoglycan, 99.9 5.3E-23 1.8E-27 199.5 23.3 258 3-316 32-304 (330)
42 1ziw_A TOLL-like receptor 3; i 99.9 1E-22 3.5E-27 216.8 25.0 336 2-346 222-594 (680)
43 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-22 4.3E-27 216.2 25.3 86 2-88 49-136 (680)
44 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-23 2.9E-27 198.2 21.8 241 2-296 54-306 (332)
45 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4.3E-28 205.9 15.7 265 3-316 32-312 (353)
46 1xku_A Decorin; proteoglycan, 99.9 2.9E-22 9.8E-27 194.3 24.9 242 2-296 52-305 (330)
47 3oja_B Anopheles plasmodium-re 99.9 8.9E-23 3E-27 213.9 20.5 276 1-316 74-356 (597)
48 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-21 7.8E-26 202.2 30.4 256 3-348 41-296 (622)
49 3zyj_A Leucine-rich repeat-con 99.9 7.3E-22 2.5E-26 199.3 24.3 242 4-295 45-290 (440)
50 2z66_A Variable lymphocyte rec 99.9 2.9E-22 9.9E-27 192.2 20.3 233 39-316 19-259 (306)
51 3zyi_A Leucine-rich repeat-con 99.9 5.4E-22 1.8E-26 200.9 22.3 239 28-316 56-301 (452)
52 1jl5_A Outer protein YOPM; leu 99.9 5E-22 1.7E-26 200.8 21.3 269 2-310 111-382 (454)
53 2z66_A Variable lymphocyte rec 99.9 4E-22 1.4E-26 191.2 19.4 241 5-295 10-259 (306)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-23 3.9E-28 203.0 7.0 216 23-295 31-248 (317)
55 3zyi_A Leucine-rich repeat-con 99.9 3.1E-21 1.1E-25 195.3 23.9 241 5-295 57-301 (452)
56 3o53_A Protein LRIM1, AGAP0063 99.9 4.1E-23 1.4E-27 199.2 9.4 241 2-300 34-278 (317)
57 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-21 5.2E-26 205.8 21.4 129 2-134 52-188 (635)
58 1wwl_A Monocyte differentiatio 99.9 9.3E-24 3.2E-28 203.2 3.4 155 23-201 40-212 (312)
59 1ozn_A Reticulon 4 receptor; N 99.9 6.8E-21 2.3E-25 180.7 22.1 220 29-295 14-236 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-21 1.2E-25 182.5 19.9 221 5-274 14-238 (285)
61 3oja_A Leucine-rich immune mol 99.9 2.1E-21 7.2E-26 198.0 12.5 214 25-295 33-248 (487)
62 3oja_A Leucine-rich immune mol 99.8 8.7E-22 3E-26 200.9 9.4 238 2-297 34-275 (487)
63 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-19 3.6E-24 189.6 24.4 233 2-295 61-295 (622)
64 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-19 4.7E-24 190.7 25.0 175 118-294 370-552 (635)
65 2z80_A TOLL-like receptor 2, v 99.8 5.8E-21 2E-25 186.9 13.1 254 2-297 52-314 (353)
66 1p9a_G Platelet glycoprotein I 99.8 2.1E-19 7.2E-24 170.7 22.0 204 21-274 5-208 (290)
67 1wwl_A Monocyte differentiatio 99.8 4.9E-22 1.7E-26 191.1 3.4 247 48-345 42-305 (312)
68 2z62_A TOLL-like receptor 4, v 99.8 3.5E-19 1.2E-23 168.0 18.0 213 39-295 19-235 (276)
69 1z7x_W Ribonuclease inhibitor; 99.8 3E-22 1E-26 203.2 -4.8 324 1-347 27-409 (461)
70 2ast_B S-phase kinase-associat 99.8 2.3E-20 7.7E-25 181.3 7.9 173 4-201 49-233 (336)
71 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.5E-23 165.2 19.9 197 48-295 9-206 (290)
72 1h6u_A Internalin H; cell adhe 99.8 6.4E-19 2.2E-23 168.9 17.7 189 48-295 40-228 (308)
73 2o6q_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 160.9 22.1 151 27-201 17-168 (270)
74 2z62_A TOLL-like receptor 4, v 99.8 6.3E-19 2.2E-23 166.2 17.3 211 14-274 18-237 (276)
75 2o6q_A Variable lymphocyte rec 99.8 2.2E-18 7.4E-23 162.1 20.6 199 49-295 16-216 (270)
76 3rfs_A Internalin B, repeat mo 99.8 3.2E-19 1.1E-23 167.9 14.5 210 21-285 36-247 (272)
77 1h6u_A Internalin H; cell adhe 99.8 6E-19 2.1E-23 169.1 15.5 198 22-278 37-234 (308)
78 2xwt_C Thyrotropin receptor; s 99.8 1.1E-18 3.6E-23 161.1 16.0 207 36-295 20-237 (239)
79 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-21 4.4E-26 198.5 -4.2 298 1-316 55-409 (461)
80 3rfs_A Internalin B, repeat mo 99.8 1.1E-18 3.6E-23 164.4 16.0 221 25-301 18-239 (272)
81 3ogk_B Coronatine-insensitive 99.8 4.9E-21 1.7E-25 200.5 -0.2 340 1-347 72-474 (592)
82 2ast_B S-phase kinase-associat 99.8 6.3E-20 2.2E-24 178.1 7.6 178 2-201 70-258 (336)
83 2xwt_C Thyrotropin receptor; s 99.8 1.8E-18 6.3E-23 159.4 16.2 206 12-271 20-236 (239)
84 3ogk_B Coronatine-insensitive 99.8 2.1E-21 7.2E-26 203.3 -5.4 339 1-347 111-499 (592)
85 2p1m_B Transport inhibitor res 99.8 1.2E-21 4.2E-26 205.1 -9.0 340 1-348 65-518 (594)
86 4glp_A Monocyte differentiatio 99.8 8E-19 2.7E-23 168.5 11.1 221 3-275 65-308 (310)
87 2ca6_A RAN GTPase-activating p 99.8 2.2E-19 7.4E-24 178.0 5.6 245 15-296 21-315 (386)
88 4glp_A Monocyte differentiatio 99.8 2.7E-18 9.2E-23 164.8 12.0 227 25-295 63-305 (310)
89 2p1m_B Transport inhibitor res 99.7 2.4E-20 8.2E-25 195.3 -4.6 262 5-291 46-345 (594)
90 2ca6_A RAN GTPase-activating p 99.7 1.9E-19 6.4E-24 178.4 0.1 249 38-316 20-314 (386)
91 3m19_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 148.8 18.2 176 3-204 15-193 (251)
92 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.5E-21 156.5 18.4 232 31-313 14-254 (350)
93 1h6t_A Internalin B; cell adhe 99.7 8.1E-17 2.8E-21 152.9 15.4 148 115-295 64-211 (291)
94 3goz_A Leucine-rich repeat-con 99.7 2.6E-18 9E-23 168.6 4.7 252 7-295 3-295 (362)
95 3m19_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 144.6 18.9 174 73-295 14-190 (251)
96 4ay9_X Follicle-stimulating ho 99.7 4E-16 1.4E-20 152.2 18.4 235 5-294 12-256 (350)
97 1m9s_A Internalin B; cell inva 99.7 7.5E-16 2.6E-20 160.4 17.6 147 116-295 62-208 (605)
98 3goz_A Leucine-rich repeat-con 99.7 1.1E-17 3.8E-22 164.2 1.6 237 2-275 22-298 (362)
99 4ezg_A Putative uncharacterize 99.7 3.8E-16 1.3E-20 139.4 11.1 151 116-295 41-192 (197)
100 3cvr_A Invasion plasmid antige 99.7 2.3E-15 7.9E-20 155.1 18.5 193 27-283 60-253 (571)
101 4ezg_A Putative uncharacterize 99.7 3.5E-16 1.2E-20 139.7 10.7 153 70-274 41-194 (197)
102 3cvr_A Invasion plasmid antige 99.7 1.9E-15 6.6E-20 155.7 17.7 180 49-299 59-245 (571)
103 1h6t_A Internalin B; cell adhe 99.7 7.7E-16 2.6E-20 146.2 13.4 172 48-277 45-216 (291)
104 2o6s_A Variable lymphocyte rec 99.6 1.6E-15 5.3E-20 136.6 14.0 147 30-200 11-158 (208)
105 1xeu_A Internalin C; cellular 99.6 7.2E-16 2.5E-20 144.1 11.6 168 71-296 17-184 (263)
106 1dce_A Protein (RAB geranylger 99.6 7.7E-18 2.6E-22 174.3 -5.5 205 48-290 348-566 (567)
107 1m9s_A Internalin B; cell inva 99.6 3.1E-15 1.1E-19 155.7 13.8 193 26-277 21-213 (605)
108 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.3E-20 140.9 8.9 129 116-277 60-188 (263)
109 2o6s_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 131.9 12.1 164 5-201 10-176 (208)
110 3e6j_A Variable lymphocyte rec 99.6 5.3E-14 1.8E-18 128.5 16.7 148 121-295 21-170 (229)
111 3e6j_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 129.7 15.2 152 27-203 20-172 (229)
112 1dce_A Protein (RAB geranylger 99.6 7.4E-17 2.5E-21 166.9 -3.4 175 2-204 349-547 (567)
113 2v9t_B SLIT homolog 2 protein 99.6 6.3E-14 2.1E-18 127.2 16.3 149 122-295 14-163 (220)
114 2v9t_B SLIT homolog 2 protein 99.6 5.9E-14 2E-18 127.4 15.9 151 29-203 14-165 (220)
115 2xot_A Amphoterin-induced prot 99.5 9.4E-14 3.2E-18 136.0 16.7 171 76-295 21-200 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.7E-18 125.6 15.6 151 29-203 14-166 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-13 5.7E-18 124.4 15.4 149 5-179 14-166 (220)
118 2ell_A Acidic leucine-rich nuc 99.5 7.7E-14 2.6E-18 120.9 11.2 130 24-178 22-159 (168)
119 2xot_A Amphoterin-induced prot 99.5 8.4E-14 2.9E-18 136.3 11.9 34 437-470 303-336 (361)
120 4b8c_D Glucose-repressible alc 99.5 1.4E-14 4.7E-19 154.5 4.0 115 64-203 215-329 (727)
121 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.6E-18 120.1 8.5 132 116-295 21-158 (168)
122 2je0_A Acidic leucine-rich nuc 99.5 1.8E-13 6.3E-18 116.0 9.3 124 26-174 17-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.4 5.7E-13 1.9E-17 112.9 9.3 128 118-293 16-149 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-12 4.1E-17 114.3 9.4 130 21-176 14-150 (176)
125 4b8c_D Glucose-repressible alc 99.3 7.4E-13 2.5E-17 141.1 7.0 88 112-201 217-304 (727)
126 1w8a_A SLIT protein; signaling 99.3 6.1E-12 2.1E-16 111.4 11.7 89 115-203 50-139 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 111.5 9.6 130 1-154 18-152 (176)
128 1w8a_A SLIT protein; signaling 99.3 2.4E-11 8.2E-16 107.6 13.8 127 122-274 11-139 (192)
129 2wfh_A SLIT homolog 2 protein 99.3 4.1E-11 1.4E-15 106.2 13.3 87 115-201 50-137 (193)
130 2wfh_A SLIT homolog 2 protein 99.3 6E-11 2E-15 105.1 13.7 103 76-203 13-115 (193)
131 3sb4_A Hypothetical leucine ri 99.2 1.3E-11 4.4E-16 119.1 9.0 60 232-294 246-307 (329)
132 1ds9_A Outer arm dynein; leuci 99.2 5.6E-14 1.9E-18 125.3 -7.2 125 45-196 43-180 (198)
133 2o6r_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 103.0 12.7 59 29-89 10-68 (177)
134 2o6r_A Variable lymphocyte rec 99.2 1.7E-10 5.7E-15 100.6 14.9 128 121-274 9-137 (177)
135 3sb4_A Hypothetical leucine ri 99.2 2.8E-10 9.6E-15 109.7 14.7 85 116-204 223-311 (329)
136 1ds9_A Outer arm dynein; leuci 99.2 2.5E-13 8.6E-18 121.1 -6.5 143 4-172 25-180 (198)
137 4fdw_A Leucine rich hypothetic 99.1 1.8E-08 6.2E-13 99.5 21.9 35 116-150 177-211 (401)
138 2r9u_A Variable lymphocyte rec 99.0 9.6E-10 3.3E-14 95.5 10.4 59 29-89 15-73 (174)
139 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.3E-14 93.8 10.4 60 28-89 11-70 (170)
140 3un9_A NLR family member X1; l 99.0 8.5E-11 2.9E-15 115.1 2.2 161 25-203 71-252 (372)
141 2r9u_A Variable lymphocyte rec 99.0 5.2E-09 1.8E-13 90.8 12.3 107 122-278 15-122 (174)
142 3g39_A Variable lymphocyte rec 99.0 3.9E-09 1.3E-13 91.2 11.3 103 75-203 11-115 (170)
143 4fdw_A Leucine rich hypothetic 98.9 4E-08 1.4E-12 97.0 19.0 236 3-294 114-355 (401)
144 4fs7_A Uncharacterized protein 98.8 1.3E-07 4.6E-12 93.2 17.8 150 16-174 60-216 (394)
145 3un9_A NLR family member X1; l 98.8 5E-10 1.7E-14 109.6 -0.4 160 2-179 72-252 (372)
146 2ifg_A High affinity nerve gro 98.7 5.5E-08 1.9E-12 94.2 10.4 33 437-469 311-343 (347)
147 2ifg_A High affinity nerve gro 98.6 7.7E-08 2.6E-12 93.1 9.6 55 32-87 14-70 (347)
148 2ra8_A Uncharacterized protein 98.6 2.4E-08 8.1E-13 97.0 5.9 60 234-294 250-317 (362)
149 2ra8_A Uncharacterized protein 98.5 2.3E-07 7.9E-12 90.0 8.1 159 1-178 138-319 (362)
150 4fs7_A Uncharacterized protein 98.4 1E-05 3.5E-10 79.6 18.8 294 1-341 70-393 (394)
151 4gt6_A Cell surface protein; l 98.3 2.4E-05 8.1E-10 77.0 18.9 216 114-345 132-366 (394)
152 4gt6_A Cell surface protein; l 98.2 0.00013 4.5E-09 71.6 20.9 76 3-82 65-146 (394)
153 1io0_A Tropomodulin; LRR prote 98.1 9.6E-07 3.3E-11 77.2 3.3 112 48-177 35-162 (185)
154 3e4g_A ATP synthase subunit S, 98.1 1.8E-06 6.3E-11 73.9 4.1 82 3-84 62-150 (176)
155 1io0_A Tropomodulin; LRR prote 98.1 1.9E-06 6.5E-11 75.3 4.1 40 114-153 60-104 (185)
156 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7E-11 73.6 3.5 63 235-298 60-128 (176)
157 4h09_A Hypothetical leucine ri 97.9 0.0012 4.2E-08 64.2 21.0 74 3-83 47-123 (379)
158 4h09_A Hypothetical leucine ri 97.7 0.0036 1.2E-07 60.7 21.4 57 21-82 41-100 (379)
159 3rw6_A Nuclear RNA export fact 97.7 1.2E-05 4.2E-10 74.0 3.2 80 116-197 167-258 (267)
160 3rw6_A Nuclear RNA export fact 97.6 3.9E-05 1.3E-09 70.6 4.7 83 70-173 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0023 7.7E-08 55.7 5.1 87 48-152 40-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0055 1.9E-07 53.3 3.4 112 23-152 38-167 (197)
163 3rfe_A Platelet glycoprotein I 94.4 0.074 2.5E-06 42.8 6.1 55 239-295 11-66 (130)
164 3rfe_A Platelet glycoprotein I 92.5 0.23 8E-06 39.8 6.1 51 123-176 12-65 (130)
165 1wwb_X Protein (brain derived 60.5 13 0.00045 27.5 5.0 34 437-470 64-97 (103)
166 1he7_A High affinity nerve gro 52.4 18 0.00063 28.3 4.7 33 437-469 65-97 (126)
167 1gl4_B Basement membrane-speci 43.4 20 0.00069 25.8 3.5 34 436-469 63-96 (98)
168 1gxe_A Myosin binding protein 41.3 15 0.0005 29.3 2.6 34 437-470 105-138 (139)
169 3knb_B Obscurin-like protein 1 39.2 15 0.00051 27.6 2.2 34 437-470 71-104 (107)
170 1wwc_A Protein (NT-3 growth fa 38.6 32 0.0011 25.8 4.1 31 437-467 67-97 (118)
171 3caf_A Fibroblast growth facto 38.6 14 0.00048 26.8 1.9 33 437-469 67-99 (100)
172 2bk8_A Connectin, M1, titin he 38.2 19 0.00064 25.9 2.6 34 437-470 60-93 (97)
173 3cx2_A Myosin-binding protein 37.3 21 0.00071 26.5 2.8 34 437-470 74-107 (108)
174 1wit_A Twitchin 18TH IGSF modu 37.1 16 0.00056 26.1 2.0 31 437-467 60-90 (93)
175 1g1c_A Immunoglobulin-like dom 37.0 16 0.00054 26.4 2.0 34 437-470 64-97 (99)
176 3knb_A Titin; IG-like, titin, 36.9 16 0.00054 26.9 2.0 33 437-469 65-97 (100)
177 2ckn_A Basic fibroblast growth 36.2 17 0.00057 26.2 2.0 34 436-469 61-94 (95)
178 2edj_A Roundabout homolog 2; K 34.9 25 0.00086 25.3 2.8 34 437-470 64-97 (100)
179 1u2h_A APEG-1, aortic preferen 33.2 20 0.00067 25.8 2.0 33 437-469 64-96 (99)
180 2cqv_A MLCK, myosin light chai 33.1 21 0.00071 26.7 2.1 34 437-470 65-98 (114)
181 3s35_X Vascular endothelial gr 32.8 27 0.00091 26.4 2.8 34 437-470 76-109 (122)
182 3kvq_A Vascular endothelial gr 31.4 30 0.001 25.2 2.8 34 437-470 66-99 (108)
183 1nct_A Titin; cell adhesion, g 30.8 36 0.0012 25.0 3.2 33 437-469 72-104 (106)
184 2e7c_A Myosin-binding protein 30.7 27 0.00091 26.3 2.4 34 437-470 81-114 (118)
185 2kdg_A Myotilin; immonoglobuli 29.2 27 0.00093 25.0 2.2 32 439-470 66-97 (100)
186 2dav_A SLOW MYBP-C, myosin-bin 27.0 28 0.00094 27.3 1.9 37 435-471 75-111 (126)
187 2eo9_A Roundabout homolog 1; b 26.8 37 0.0013 25.4 2.6 33 437-469 64-96 (118)
188 3qp3_A Titin; I-SET IG-like, s 26.4 30 0.001 25.0 2.0 34 437-470 66-99 (103)
189 3puc_A Titin; I-SET IG-like do 26.0 31 0.0011 24.6 2.0 33 437-469 64-96 (99)
190 4hwu_A Fibroblast growth facto 25.7 41 0.0014 23.9 2.6 33 437-469 53-85 (95)
191 2yr3_A Myosin light chain kina 24.7 27 0.00093 25.1 1.4 28 437-464 66-93 (99)
192 2dm2_A Palladin; beta-sandwich 24.5 26 0.00089 25.9 1.3 34 437-470 68-101 (110)
193 2dm3_A KIAA0992 protein, palla 24.4 28 0.00097 25.5 1.5 34 437-470 68-101 (110)
194 3irg_B Obscurin-like protein 1 24.2 38 0.0013 24.6 2.2 34 437-470 71-104 (107)
195 3irg_A Titin; IG-like, titin, 24.1 35 0.0012 24.3 2.0 33 437-469 65-97 (100)
196 3so5_A LIG-3, leucine-rich rep 23.6 28 0.00094 25.4 1.3 26 437-462 78-103 (112)
197 2kkq_A Myotilin; unknown funct 23.1 37 0.0013 25.5 2.0 34 437-470 75-108 (116)
198 3m45_A Cell adhesion molecule 21.5 68 0.0023 23.0 3.2 33 437-470 73-105 (108)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.4e-29 Score=261.67 Aligned_cols=331 Identities=17% Similarity=0.196 Sum_probs=257.7
Q ss_pred CCCccEEEecCcccccc-----------------cccccc--ccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCc
Q 036075 1 MPNFEELDLGGCTRLRE-----------------IHPTLL--LHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCR 60 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~-----------------~~~~~~--~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~ 60 (474)
+++|++|+|++|...+. +|..++ ++++|++|+|++|...+.+|..+. +++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 57899999999864443 999999 999999999999999999998888 9999999999998
Q ss_pred -CCc-cchhhhccc------CccceeeccCCCccccCccccccccCCccccc--cCCch-hhHHHHhcCCcccEEEccCc
Q 036075 61 -KFK-NFREIVGSR------KCLSELLLDGTDIKELPKHKRSKISSNFESFW--PFQFS-EFSEIMTSMEHLLELHLEGT 129 (474)
Q Consensus 61 -~l~-~~~~~~~~l------~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~-~l~~~l~~l~~L~~L~L~~~ 129 (474)
... .+|..++++ ++|++|++++|.+..+|....+..+.+|+.|. .+.+. .+| .+..+++|++|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 444 689888876 99999999999999888733355566677664 45566 788 8889999999999999
Q ss_pred CccccCCcccCCCC-CcEEeccCCcCCCccCccCCCCC--CCCEEeccCCCCCccCCCCcc-------CCCCCcEEecCC
Q 036075 130 AIRGLPVSIEHLTG-LVLLNLRDCKNLETLPSTIDGLK--SLRNLYLSGCSKLKSMPGNFG-------KVESLEVLDLSG 199 (474)
Q Consensus 130 ~i~~l~~~i~~l~~-L~~L~L~~c~~l~~lp~~l~~L~--~L~~L~l~~c~~l~~~~~~l~-------~l~~L~~L~l~~ 199 (474)
.+..+|..++.+++ |++|++++|. ++.+|..+..++ +|+.|++++|......|..+. .+++|+.|++++
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 99999999999999 9999999987 458888777655 899999999988888888777 788999999999
Q ss_pred CCCCCCCCCC--chhhHHHhhhccCCCCccCCCC--CC-------CCCcccEEEccCCCCCCCCcccccc--CCCCCCEE
Q 036075 200 CKGPPLSSSW--YLPFLISLMRRCSDPMALGFPS--LS-------GLCSLRKLDLSDSNLGEGAIPNDIG--NLCSLKEL 266 (474)
Q Consensus 200 ~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~l~~--l~-------~l~~L~~L~l~~~~l~~~~~~~~l~--~l~~L~~L 266 (474)
|.....+... .++.+..+....+... .+|. +. ++++|+.|++++|++. .+|..+. .+++|++|
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEE
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEE
Confidence 9877544321 1333433332222222 3333 22 2338999999999987 4888887 89999999
Q ss_pred eCCCCCCCcccHhhhcCCCcceecccc------ccccccCCCC---CCCcceeeccccccccccccccccCccccccccc
Q 036075 267 YLSKNSFITLPASINRLFNLEKLELED------CKRLQSMPQL---PPSIEEVRVNGCASLETLSGALKLCNSEYISINC 337 (474)
Q Consensus 267 ~L~~~~l~~lp~~l~~l~~L~~L~l~~------c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~ 337 (474)
++++|+++.+|..+..+++|+.|++++ +.....+|.. .++|+.|+++++.- +.++... . ++
T Consensus 519 ~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-------~--~~ 588 (636)
T 4eco_A 519 DLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-------T--PN 588 (636)
T ss_dssp ECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-------C--TT
T ss_pred ECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-------h--Cc
Confidence 999999999999999999999999955 4445555532 26788999988864 6665331 1 56
Q ss_pred cccccccCCC
Q 036075 338 IDDLKLLGCN 347 (474)
Q Consensus 338 L~~l~~~~c~ 347 (474)
|+.|++.++.
T Consensus 589 L~~L~Ls~N~ 598 (636)
T 4eco_A 589 ISVLDIKDNP 598 (636)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECcCCC
Confidence 7777776643
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.2e-27 Score=248.35 Aligned_cols=313 Identities=20% Similarity=0.158 Sum_probs=165.3
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
+++|++|+|++|......|..++.+++|++|+|++|......|..+. +++|++|++++|......+..+.++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 35666666666543333345566666666666666544444454444 66666666666554333344556666666666
Q ss_pred ccCCCccccCccccccccCCccccc--cCCchhh-HHHHhcCCccc----------------------------------
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFW--PFQFSEF-SEIMTSMEHLL---------------------------------- 122 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l-~~~l~~l~~L~---------------------------------- 122 (474)
+++|.+..++...... +.+|+.|. .+.+..+ +..++.+++|+
T Consensus 136 L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp CCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred CCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 6666665542111111 23333332 2222222 23333333333
Q ss_pred -------------------------------------------EEEccCcCccccCC-cccCCCCCcEEeccCCcCCCcc
Q 036075 123 -------------------------------------------ELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETL 158 (474)
Q Consensus 123 -------------------------------------------~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~l 158 (474)
.|+++++.+.+++. .++.+++|++|++++|. ++.+
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSEL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCC
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCC
Confidence 33333333333322 25666777777777764 4567
Q ss_pred CccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCC-CC--CCCchhhHHHhhhccCCCCccC--CCCCC
Q 036075 159 PSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPP-LS--SSWYLPFLISLMRRCSDPMALG--FPSLS 233 (474)
Q Consensus 159 p~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~-~~--~~~~~~~l~~l~~~~~~~~~~~--l~~l~ 233 (474)
|..+..+++|++|++++|......|..++.+++|+.|++++|.... .+ ....++.+..+........... ...+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 7777777777777777766555555566677777777777765431 11 1223333333322222222111 12256
Q ss_pred CCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcc--cHhhhcCCCcceeccccccccccCCCC---CCCcc
Q 036075 234 GLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITL--PASINRLFNLEKLELEDCKRLQSMPQL---PPSIE 308 (474)
Q Consensus 234 ~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~ 308 (474)
++++|++|++++|.+. +..|..+..+++|++|++++|.+... +..+..+++|++|++++|..-...|.. .++|+
T Consensus 374 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 6667777777776664 23355566666777777777666533 233666667777777666433333321 24666
Q ss_pred eeeccccc
Q 036075 309 EVRVNGCA 316 (474)
Q Consensus 309 ~L~i~~c~ 316 (474)
.|+++++.
T Consensus 453 ~L~L~~n~ 460 (606)
T 3t6q_A 453 HLNLQGNH 460 (606)
T ss_dssp EEECTTCB
T ss_pred EEECCCCC
Confidence 66666654
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=239.90 Aligned_cols=298 Identities=19% Similarity=0.169 Sum_probs=158.6
Q ss_pred ccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccc
Q 036075 14 RLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHK 92 (474)
Q Consensus 14 ~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~ 92 (474)
.++.+|..+. ++++.|+|++|..-...|..+. +++|++|+|++|......|..+.++++|++|+|++|.+..+|..
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 98 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG- 98 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-
Confidence 3444444332 3455555555432222233333 55555555555543333344555555555555555555544432
Q ss_pred cccccCCccccc--cCCchhh-HHHHhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCccCCCCCCC
Q 036075 93 RSKISSNFESFW--PFQFSEF-SEIMTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSL 168 (474)
Q Consensus 93 ~~~~~~~L~~l~--~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L 168 (474)
.+..+.+|+.|. .+.+..+ +..+.++++|++|++++|.+..+ +..++.+++|+.|++++|......+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 111222233222 1122211 23456667777777777777664 3456677777777777765332222346667777
Q ss_pred CEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCC
Q 036075 169 RNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNL 248 (474)
Q Consensus 169 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l 248 (474)
+.|++++|......+..+..+++|+.|++++|.... ...+......+|++|++++|++
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD----------------------TMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC----------------------EECTTTTTTCCCSEEEEESSCC
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc----------------------ccCcccccCccccEEECcCCcc
Confidence 777777765555445566667777777777665322 0011122334677777777776
Q ss_pred CCCCcc-ccccCCCCCCEEeCCCCCCCcccH-hhhcCCCcceeccccccccccCCCC---CCCcceeecccccccccccc
Q 036075 249 GEGAIP-NDIGNLCSLKELYLSKNSFITLPA-SINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCASLETLSG 323 (474)
Q Consensus 249 ~~~~~~-~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~ 323 (474)
.. +| ..+..+++|++|++++|.+..++. .+..+++|++|++++|..-...|.. .++|+.|+++++ .++.++.
T Consensus 237 ~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 237 TA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp CS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred cc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 53 44 356667777777777777765543 4666777777777776432222221 146667777665 3444432
Q ss_pred ccccCccccccccccccccccC
Q 036075 324 ALKLCNSEYISINCIDDLKLLG 345 (474)
Q Consensus 324 ~~~l~~l~~~~c~~L~~l~~~~ 345 (474)
. .|..+++|+.|.+.+
T Consensus 314 ~------~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 314 S------VFHSVGNLETLILDS 329 (477)
T ss_dssp G------GBSCGGGCCEEECCS
T ss_pred h------HcCCCcccCEEEccC
Confidence 2 245566666666655
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3e-28 Score=256.99 Aligned_cols=306 Identities=15% Similarity=0.203 Sum_probs=253.0
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCc--ccCCccc-c------CCccEEEccCCcCCccchh--hh
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLT--TLPDKIC-M------ESLKILVLSGCRKFKNFRE--IV 69 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~--~lp~~~~-l------~~L~~L~L~~c~~l~~~~~--~~ 69 (474)
+++|++|+|++|...+.+|..++++++|++|++++|..+. .+|..++ + ++|++|++++|... .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 5789999999998889999999999999999999998444 5887766 5 99999999998755 8988 89
Q ss_pred cccCccceeeccCCCcc-ccCccccccccCCccccc--cCCchhhHHHHhcCCc-ccEEEccCcCccccCCcccCCC--C
Q 036075 70 GSRKCLSELLLDGTDIK-ELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEH-LLELHLEGTAIRGLPVSIEHLT--G 143 (474)
Q Consensus 70 ~~l~~L~~L~L~~~~l~-~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~-L~~L~L~~~~i~~l~~~i~~l~--~ 143 (474)
+++++|++|++++|.+. .+| .+..+.+|+.|. .+.+..+|..+.++++ |++|++++|.++++|..++.+. +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 99999999999999999 888 345556666654 5667788888999999 9999999999999999887765 9
Q ss_pred CcEEeccCCcCCCccCccCC-------CCCCCCEEeccCCCCCccCCCC-ccCCCCCcEEecCCCCCCCCCCCCch----
Q 036075 144 LVLLNLRDCKNLETLPSTID-------GLKSLRNLYLSGCSKLKSMPGN-FGKVESLEVLDLSGCKGPPLSSSWYL---- 211 (474)
Q Consensus 144 L~~L~L~~c~~l~~lp~~l~-------~L~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~---- 211 (474)
|++|++++|......|..+. .+++|++|++++|... .+|.. +..+++|+.|++++|.....+.....
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 99999999998888888777 7889999999997654 66655 45689999999999997755543211
Q ss_pred -----hhHHHhhhccCCCCccCCCC-CC--CCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCC------CCCC-cc
Q 036075 212 -----PFLISLMRRCSDPMALGFPS-LS--GLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSK------NSFI-TL 276 (474)
Q Consensus 212 -----~~l~~l~~~~~~~~~~~l~~-l~--~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~------~~l~-~l 276 (474)
+.+..+....+. .. .+|. +. .+++|+.|++++|++.. +|..+..+++|++|++++ |++. .+
T Consensus 483 ~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNK-LT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp ECTTGGGCCEEECCSSC-CC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred cccccCCccEEECcCCc-CC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 144444333333 22 4555 55 89999999999999975 899999999999999954 5554 88
Q ss_pred cHhhhcCCCcceeccccccccccCCC-CCCCcceeeccccc
Q 036075 277 PASINRLFNLEKLELEDCKRLQSMPQ-LPPSIEEVRVNGCA 316 (474)
Q Consensus 277 p~~l~~l~~L~~L~l~~c~~l~~l~~-l~~~L~~L~i~~c~ 316 (474)
|..+..+++|++|++++|+. +.+|. +.++|+.|++++++
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 99999999999999999965 88886 66899999999986
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.2e-27 Score=255.63 Aligned_cols=331 Identities=15% Similarity=0.164 Sum_probs=245.3
Q ss_pred CCCccEEEecCccccc-----------------ccccccc--ccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCc
Q 036075 1 MPNFEELDLGGCTRLR-----------------EIHPTLL--LHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCR 60 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~-----------------~~~~~~~--~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~ 60 (474)
+++|++|+|++|...+ .+|..++ ++++|++|+|++|...+.+|..+. +++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5799999999986444 2999988 999999999999999999998887 9999999999997
Q ss_pred -CCc-cchhhhcccC-------ccceeeccCCCccccCccccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCc
Q 036075 61 -KFK-NFREIVGSRK-------CLSELLLDGTDIKELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGT 129 (474)
Q Consensus 61 -~l~-~~~~~~~~l~-------~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~ 129 (474)
... .+|..+++++ +|+.|++++|.+..+|....+..+.+|+.|. .+.+..+| .++.+++|+.|++++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC
Confidence 444 5888777766 9999999999999888722345566666654 45566778 7888999999999999
Q ss_pred CccccCCcccCCCC-CcEEeccCCcCCCccCccCCCCCC--CCEEeccCCCCCccCCC---Ccc--CCCCCcEEecCCCC
Q 036075 130 AIRGLPVSIEHLTG-LVLLNLRDCKNLETLPSTIDGLKS--LRNLYLSGCSKLKSMPG---NFG--KVESLEVLDLSGCK 201 (474)
Q Consensus 130 ~i~~l~~~i~~l~~-L~~L~L~~c~~l~~lp~~l~~L~~--L~~L~l~~c~~l~~~~~---~l~--~l~~L~~L~l~~~~ 201 (474)
.+..+|..+..+++ |+.|++++|. +..+|..+..++. |+.|++++|.....+|. .++ .+++|+.|++++|.
T Consensus 606 ~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 606 QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 99989988999998 9999999987 4588887776654 99999998876554442 223 33478888888888
Q ss_pred CCCCCCCC--chhhHHHhhhccCCCCccCCCC--C-------CCCCcccEEEccCCCCCCCCcccccc--CCCCCCEEeC
Q 036075 202 GPPLSSSW--YLPFLISLMRRCSDPMALGFPS--L-------SGLCSLRKLDLSDSNLGEGAIPNDIG--NLCSLKELYL 268 (474)
Q Consensus 202 ~~~~~~~~--~~~~l~~l~~~~~~~~~~~l~~--l-------~~l~~L~~L~l~~~~l~~~~~~~~l~--~l~~L~~L~L 268 (474)
...++... .++.+..+....+ ... .+|. + .++++|+.|++++|++. .+|..+. .+++|+.|+|
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNN-LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSC-CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEEC
T ss_pred CCccCHHHHccCCCCCEEECCCC-cCC-ccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEe
Confidence 66443221 1233333322222 222 3333 2 23348999999999887 4888887 8899999999
Q ss_pred CCCCCCcccHhhhcCCCcceecccc------ccccccCCCC---CCCcceeeccccccccccccccccCccccccccccc
Q 036075 269 SKNSFITLPASINRLFNLEKLELED------CKRLQSMPQL---PPSIEEVRVNGCASLETLSGALKLCNSEYISINCID 339 (474)
Q Consensus 269 ~~~~l~~lp~~l~~l~~L~~L~l~~------c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~ 339 (474)
++|++..+|..+..+++|+.|++++ |.....+|.. .++|+.|++++|.- ..++... .+.|+
T Consensus 761 s~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l---------~~~L~ 830 (876)
T 4ecn_A 761 SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL---------TPQLY 830 (876)
T ss_dssp CSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---------CSSSC
T ss_pred CCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh---------cCCCC
Confidence 9999988998888999999999977 4444555532 36788888888853 6665331 14566
Q ss_pred cccccCCC
Q 036075 340 DLKLLGCN 347 (474)
Q Consensus 340 ~l~~~~c~ 347 (474)
.|++.++.
T Consensus 831 ~LdLs~N~ 838 (876)
T 4ecn_A 831 ILDIADNP 838 (876)
T ss_dssp EEECCSCT
T ss_pred EEECCCCC
Confidence 66666654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=6.1e-28 Score=260.28 Aligned_cols=336 Identities=19% Similarity=0.189 Sum_probs=201.2
Q ss_pred CCCccEEEecCcccccccccccccc-CcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhh-hcccCccce
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLH-KKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREI-VGSRKCLSE 77 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l-~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~-~~~l~~L~~ 77 (474)
+++|++|++++|...+.+|..+... ++|++|++++|...+.+|..+. +++|++|++++|.....+|.. +.++++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 3566777777765544666655543 6677777766655555665555 666666666666554455543 566666666
Q ss_pred eeccCCCcc-ccCcc-------------------------ccccccCCccccc--cCCc-hhhHHHHhcCCcccEEEccC
Q 036075 78 LLLDGTDIK-ELPKH-------------------------KRSKISSNFESFW--PFQF-SEFSEIMTSMEHLLELHLEG 128 (474)
Q Consensus 78 L~L~~~~l~-~l~~~-------------------------~~~~~~~~L~~l~--~~~~-~~l~~~l~~l~~L~~L~L~~ 128 (474)
|++++|.+. .+|.. ........|+.|. .+.+ +.+|..+.++++|++|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 666666554 33322 1111123344443 2222 25667777888888888888
Q ss_pred cCccc-cCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCC-CC
Q 036075 129 TAIRG-LPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPP-LS 206 (474)
Q Consensus 129 ~~i~~-l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~-~~ 206 (474)
|.+.+ +|..++.+++|+.|++++|.....+|..+..+++|++|++++|.....+|..++.+++|++|++++|.... .+
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 87774 67777888888888888877666777777777888888888877766777777777888888888777542 22
Q ss_pred -CCCchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccc-----------------------------
Q 036075 207 -SSWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPN----------------------------- 255 (474)
Q Consensus 207 -~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~----------------------------- 255 (474)
....++.+..+... .+.....+|. +..+++|+.|++++|.+. +.+|.
T Consensus 508 ~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 508 KWIGRLENLAILKLS-NNSFSGNIPAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp GGGGGCTTCCEEECC-SSCCEEECCGGGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred hHHhcCCCCCEEECC-CCcccCcCCHHHcCCCCCCEEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccc
Confidence 12233333333222 2222223333 666777777777766543 12222
Q ss_pred -----------------------------------------cccCCCCCCEEeCCCCCCC-cccHhhhcCCCcceecccc
Q 036075 256 -----------------------------------------DIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELED 293 (474)
Q Consensus 256 -----------------------------------------~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~ 293 (474)
.++.+++|+.|++++|+++ .+|..++.++.|+.|++++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 2333456677777777766 6677777777777777777
Q ss_pred ccccccCCCC---CCCcceeeccccccccccccccccCccccccccccccccccC
Q 036075 294 CKRLQSMPQL---PPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLG 345 (474)
Q Consensus 294 c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~ 345 (474)
|..-..+|.- .++|+.|+++++.--..++. .+.+++.|+.|++.+
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-------AMSALTMLTEIDLSN 713 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-------GGGGCCCCSEEECCS
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCCh-------HHhCCCCCCEEECcC
Confidence 7555555542 24666666666643223331 244555565555555
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.5e-27 Score=253.15 Aligned_cols=306 Identities=13% Similarity=0.148 Sum_probs=247.8
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCc--ccCCccc-c-------CCccEEEccCCcCCccchh--h
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLT--TLPDKIC-M-------ESLKILVLSGCRKFKNFRE--I 68 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~--~lp~~~~-l-------~~L~~L~L~~c~~l~~~~~--~ 68 (474)
+++|++|+|++|...+.+|..++++++|+.|+|++|..+. .+|..++ + ++|++|+|++|... .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 5789999999998889999999999999999999997444 5776554 4 49999999998765 8988 8
Q ss_pred hcccCccceeeccCCCccccCccccccccCCccccc--cCCchhhHHHHhcCCc-ccEEEccCcCccccCCcccCCCC--
Q 036075 69 VGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEH-LLELHLEGTAIRGLPVSIEHLTG-- 143 (474)
Q Consensus 69 ~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~-L~~L~L~~~~i~~l~~~i~~l~~-- 143 (474)
++++++|+.|++++|.+..+| .+..+.+|+.|. .+.+..+|..+.++++ |+.|++++|.+..+|..+..+..
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence 999999999999999999888 456666777664 5666788988999999 99999999999999988887765
Q ss_pred CcEEeccCCcCCCccCc---cCC--CCCCCCEEeccCCCCCccCCCCc-cCCCCCcEEecCCCCCCCCCCCCc-------
Q 036075 144 LVLLNLRDCKNLETLPS---TID--GLKSLRNLYLSGCSKLKSMPGNF-GKVESLEVLDLSGCKGPPLSSSWY------- 210 (474)
Q Consensus 144 L~~L~L~~c~~l~~lp~---~l~--~L~~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~------- 210 (474)
|+.|++++|.....+|. .+. .+++|+.|++++|... .+|..+ ..+++|+.|++++|....++....
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 99999999986655443 222 4458999999997654 677655 478999999999998775554321
Q ss_pred --hhhHHHhhhccCCCCccCCCC-CC--CCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCC------CCCC-cccH
Q 036075 211 --LPFLISLMRRCSDPMALGFPS-LS--GLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSK------NSFI-TLPA 278 (474)
Q Consensus 211 --~~~l~~l~~~~~~~~~~~l~~-l~--~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~------~~l~-~lp~ 278 (474)
++.+..+....+.. . .+|. +. .+++|+.|++++|++.. +|..+..+++|+.|+|++ |++. .+|.
T Consensus 725 ~nl~~L~~L~Ls~N~L-~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKL-T-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp TTGGGCCEEECCSSCC-C-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccCCccEEECCCCCC-c-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 12444443333332 2 4555 55 89999999999999975 899999999999999987 5554 7899
Q ss_pred hhhcCCCcceeccccccccccCCC-CCCCcceeeccccc
Q 036075 279 SINRLFNLEKLELEDCKRLQSMPQ-LPPSIEEVRVNGCA 316 (474)
Q Consensus 279 ~l~~l~~L~~L~l~~c~~l~~l~~-l~~~L~~L~i~~c~ 316 (474)
.+..+++|+.|++++|.. +.+|. ++++|+.|++++++
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 999999999999999965 88886 66899999999997
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=9.6e-28 Score=258.76 Aligned_cols=332 Identities=19% Similarity=0.211 Sum_probs=173.9
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
+++|++|++++|...+.++ +..+++|++|++++|.....+|....+++|++|++++|.....+|..+.++++|++|++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 4678888888875443333 26788888888888776666666323888888888888766677778888888888888
Q ss_pred cCCCccccCccccccccCCccccc--cCCch-hhHHHHhcC-CcccEEEccCcCccc-cCCcccCCCCCcEEeccCCcCC
Q 036075 81 DGTDIKELPKHKRSKISSNFESFW--PFQFS-EFSEIMTSM-EHLLELHLEGTAIRG-LPVSIEHLTGLVLLNLRDCKNL 155 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~-~l~~~l~~l-~~L~~L~L~~~~i~~-l~~~i~~l~~L~~L~L~~c~~l 155 (474)
++|.+....... .+.+|+.|. .+.+. .+|..+... ++|++|++++|.+.+ +|..++.+++|++|++++|...
T Consensus 255 s~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 255 SSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 888776322211 233344332 12222 334333332 555555555555552 4445555555555555555443
Q ss_pred CccCcc-CCCCCCCCEEeccCCCCCccCCCCccCCC-CCcEEecCCCCCCC--CC-------------------------
Q 036075 156 ETLPST-IDGLKSLRNLYLSGCSKLKSMPGNFGKVE-SLEVLDLSGCKGPP--LS------------------------- 206 (474)
Q Consensus 156 ~~lp~~-l~~L~~L~~L~l~~c~~l~~~~~~l~~l~-~L~~L~l~~~~~~~--~~------------------------- 206 (474)
..+|.. +..+++|++|++++|.....+|..+..++ +|+.|++++|.... ..
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 344433 45555555555555444444444444443 44444444443110 00
Q ss_pred -CCCchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC-cccHhhhcC
Q 036075 207 -SSWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI-TLPASINRL 283 (474)
Q Consensus 207 -~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l 283 (474)
....++.+..+.. ..+......|. +.++++|+.|++++|.+. +.+|..+..+++|++|++++|++. .+|..+..+
T Consensus 412 ~~l~~l~~L~~L~L-s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 412 PTLSNCSELVSLHL-SFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp GGGGGCTTCCEEEC-CSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HHHhcCCCCCEEEC-cCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 0111111111111 11111112232 555556666666666554 345555556666666666666555 455566666
Q ss_pred CCcceeccccccccccCCCC---CCCcceeeccccccccccccccccCccccccccccccccccCC
Q 036075 284 FNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGC 346 (474)
Q Consensus 284 ~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c 346 (474)
++|++|++++|+....+|.. .++|+.|++++|.--..++. .+.++++|+.|++.+|
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-------ELGDCRSLIWLDLNTN 548 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-------GGGGCTTCCEEECCSS
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCCCEEECCCC
Confidence 66666666666544444431 24556666666543223321 2445555555555543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.3e-26 Score=221.23 Aligned_cols=296 Identities=17% Similarity=0.235 Sum_probs=217.0
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
+++|++|++++| .+..++ .+..+++|++|++++| .+..++....+++|++|++++|. +..++ .+.++++|++|++
T Consensus 43 l~~L~~L~l~~~-~i~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCC-ccccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence 368999999997 556665 4888999999999997 55666664449999999999985 44554 5889999999999
Q ss_pred cCCCccccCccccccccCCccccc---cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCc
Q 036075 81 DGTDIKELPKHKRSKISSNFESFW---PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLET 157 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~---~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~ 157 (474)
++|.+..++. +..+.+|+.+. +.....++ .+..+++|++|+++++.+.+++. ++.+++|+.|++++|. +..
T Consensus 118 ~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~ 191 (347)
T 4fmz_A 118 NEDNISDISP---LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IED 191 (347)
T ss_dssp TTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCC
T ss_pred cCCcccCchh---hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-ccc
Confidence 9999988776 34455555554 22333333 37788888888888888887765 7888888888888875 444
Q ss_pred cCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 158 LPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 158 lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
++. +..+++|+.|++++|..... +. +..+++|++|++++|.... ++.+..+++
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~------------------------~~~~~~l~~ 244 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITD------------------------LSPLANLSQ 244 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC------------------------CGGGTTCTT
T ss_pred ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCC------------------------CcchhcCCC
Confidence 544 67788888888888654433 22 7788888888888887543 223667888
Q ss_pred ccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCC---CCCCcceeeccc
Q 036075 238 LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQ---LPPSIEEVRVNG 314 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~---l~~~L~~L~i~~ 314 (474)
|++|++++|.+.+ + ..+..+++|++|++++|.+..++ .+..+++|++|++++|+.-...+. -.++|+.|++++
T Consensus 245 L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 245 LTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 8999999888864 3 46788888999999998888875 578888899999988854333222 235788888888
Q ss_pred cccccccccccccCccccccccccccccccCCC
Q 036075 315 CASLETLSGALKLCNSEYISINCIDDLKLLGCN 347 (474)
Q Consensus 315 c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c~ 347 (474)
|+ ++.+. .+..+++|+.|++.+|.
T Consensus 321 n~-l~~~~--------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NH-ITDIR--------PLASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCCG--------GGGGCTTCSEESSSCC-
T ss_pred Cc-ccccc--------Chhhhhccceeehhhhc
Confidence 86 54443 14567777777777753
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.8e-27 Score=226.96 Aligned_cols=245 Identities=18% Similarity=0.250 Sum_probs=134.4
Q ss_pred CcccEEecCCCCCCc--ccCCccc-cCCccEEEccC-CcCCccchhhhcccCccceeeccCCCcc-ccCccccccccCCc
Q 036075 26 KKIILLNLKDCKSLT--TLPDKIC-MESLKILVLSG-CRKFKNFREIVGSRKCLSELLLDGTDIK-ELPKHKRSKISSNF 100 (474)
Q Consensus 26 ~~L~~L~L~~c~~l~--~lp~~~~-l~~L~~L~L~~-c~~l~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~~~~~~~~~L 100 (474)
.+++.|+|+++...+ .+|..+. +++|++|++++ +.....+|..+.++++|++|++++|.+. .+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----------
Confidence 456666666654444 4555554 66666666664 3333345555666666666666666554 2222
Q ss_pred cccccCCchhhHHHHhcCCcccEEEccCcCcc-ccCCcccCCCCCcEEeccCCcCCCccCccCCCCC-CCCEEeccCCCC
Q 036075 101 ESFWPFQFSEFSEIMTSMEHLLELHLEGTAIR-GLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLK-SLRNLYLSGCSK 178 (474)
Q Consensus 101 ~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~-~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~-~L~~L~l~~c~~ 178 (474)
.+.++++|++|++++|.+. .+|..++.+++|++|++++|.....+|..+..++ +|++|++++|..
T Consensus 120 -------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 120 -------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp -------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred -------------HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 2455566666666666655 3555566666666666666554445555555555 566666666554
Q ss_pred CccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccc
Q 036075 179 LKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDI 257 (474)
Q Consensus 179 l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l 257 (474)
....|..++.++ |+.|++++|.... ..|. +.++++|+.|++++|.+.. .+..+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~ 240 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEG-----------------------DASVLFGSDKNTQKIHLAKNSLAF--DLGKV 240 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEE-----------------------CCGGGCCTTSCCSEEECCSSEECC--BGGGC
T ss_pred eccCChHHhCCc-ccEEECcCCcccC-----------------------cCCHHHhcCCCCCEEECCCCceee--ecCcc
Confidence 445555555554 6666666554321 1111 4555666666666665542 22235
Q ss_pred cCCCCCCEEeCCCCCCC-cccHhhhcCCCcceeccccccccccCCCCC--CCcceeecccccccc
Q 036075 258 GNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDCKRLQSMPQLP--PSIEEVRVNGCASLE 319 (474)
Q Consensus 258 ~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~~l~--~~L~~L~i~~c~~L~ 319 (474)
..+++|++|++++|.++ .+|..+..+++|++|++++|+.-..+|... ++|+.+++.+.+.+.
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 55566666666666665 556666666666666666665444555431 345555555555443
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2e-26 Score=242.29 Aligned_cols=85 Identities=18% Similarity=0.073 Sum_probs=40.6
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
++|++|++++|......|..++.+++|++|+|++|......|..+. +++|++|++++|......+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 4455555555422222233445555555555555443333344444 555555555555433333344555555555555
Q ss_pred cCCCcc
Q 036075 81 DGTDIK 86 (474)
Q Consensus 81 ~~~~l~ 86 (474)
++|.+.
T Consensus 136 ~~n~l~ 141 (606)
T 3vq2_A 136 AHNFIH 141 (606)
T ss_dssp CSSCCC
T ss_pred CCCccc
Confidence 555554
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.5e-25 Score=235.51 Aligned_cols=228 Identities=22% Similarity=0.225 Sum_probs=170.0
Q ss_pred HHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCC-CccCCCC
Q 036075 113 EIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPG-NFGKVES 191 (474)
Q Consensus 113 ~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~-~l~~l~~ 191 (474)
..++.+++|++|++++|.++++|..++.+++|++|++++|......|..+..+++|++|++++|.....++. .++.+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 347889999999999999999999999999999999999986666677889999999999999887756654 4889999
Q ss_pred CcEEecCCCCCCCCC----CCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEe
Q 036075 192 LEVLDLSGCKGPPLS----SSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELY 267 (474)
Q Consensus 192 L~~L~l~~~~~~~~~----~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~ 267 (474)
|++|++++|...... ....++.+..+..............+..+++|++|++++|.+.....+..+..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 999999999865432 3344555554433333332222334888899999999999886543445588899999999
Q ss_pred CCCCCCCc-ccHhhhcCCCcceecccccccccc-CCC-----CCCCcceeeccccccccccccccccCcccccccccccc
Q 036075 268 LSKNSFIT-LPASINRLFNLEKLELEDCKRLQS-MPQ-----LPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDD 340 (474)
Q Consensus 268 L~~~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~-l~~-----l~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~ 340 (474)
+++|.+.. .|..+..+++|++|++++|+.-.. ++. -.++|+.|++++|. ++.+... .+..+++|+.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~ 504 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH------AFTSLKMMNH 504 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT------TTTTCTTCCE
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh------hhccccCCCE
Confidence 99998875 466788899999999999864331 111 13688888888884 4443222 3567777888
Q ss_pred ccccCCC
Q 036075 341 LKLLGCN 347 (474)
Q Consensus 341 l~~~~c~ 347 (474)
|++.++.
T Consensus 505 L~Ls~N~ 511 (606)
T 3t6q_A 505 VDLSHNR 511 (606)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8877754
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.8e-26 Score=232.58 Aligned_cols=313 Identities=17% Similarity=0.143 Sum_probs=203.1
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccC-Cccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLP-DKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++|++|+|++|......+..++.+++|++|++++|.....++ ..+. +++|++|+|++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 578999999985544447788999999999999987765664 3455 99999999999887666788899999999999
Q ss_pred ccCCCccc-cCccccccccCCccccc--cCCchhh-HHH-HhcCCcccEEEccCcCcccc-CCcccCC--CCCcEEeccC
Q 036075 80 LDGTDIKE-LPKHKRSKISSNFESFW--PFQFSEF-SEI-MTSMEHLLELHLEGTAIRGL-PVSIEHL--TGLVLLNLRD 151 (474)
Q Consensus 80 L~~~~l~~-l~~~~~~~~~~~L~~l~--~~~~~~l-~~~-l~~l~~L~~L~L~~~~i~~l-~~~i~~l--~~L~~L~L~~ 151 (474)
+++|.+.. .+....+..+.+|+.|. .+.+..+ |.. +.++++|++|++++|.+.++ +..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 99998875 33333344455565553 3444444 332 67777777777777777764 3344444 4555555555
Q ss_pred CcCCCccCc--------cCCCCCCCCEEeccCCCCCccCCCCcc------------------------------------
Q 036075 152 CKNLETLPS--------TIDGLKSLRNLYLSGCSKLKSMPGNFG------------------------------------ 187 (474)
Q Consensus 152 c~~l~~lp~--------~l~~L~~L~~L~l~~c~~l~~~~~~l~------------------------------------ 187 (474)
|.....-+. .+..+++|++|++++|......|..+.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 442221111 123446677777776644332221111
Q ss_pred ---CCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCC
Q 036075 188 ---KVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSL 263 (474)
Q Consensus 188 ---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L 263 (474)
..++|+.|++++|.... ..|. +..+++|++|++++|.+.+ ..|..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 325 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFA-----------------------LLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHL 325 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTC
T ss_pred ccccccCceEEEecCccccc-----------------------cchhhcccCCCCCEEECCCCcccc-cChhHhcCcccC
Confidence 12456666666665432 1222 6777888888888888763 345677788888
Q ss_pred CEEeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCCC---CCCcceeeccccccccccccccccCccccccccccc
Q 036075 264 KELYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCASLETLSGALKLCNSEYISINCID 339 (474)
Q Consensus 264 ~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~ 339 (474)
++|++++|.+..+ |..+..+++|++|++++|..-...|.. .++|+.|+++++ .++.++.. .+..+++|+
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~ 398 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG------IFDRLTSLQ 398 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT------TTTTCTTCC
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHh------HhccCCccc
Confidence 8888888888765 567788888888888888543322321 257788888776 35554432 245667777
Q ss_pred cccccC
Q 036075 340 DLKLLG 345 (474)
Q Consensus 340 ~l~~~~ 345 (474)
.|++.+
T Consensus 399 ~L~l~~ 404 (455)
T 3v47_A 399 KIWLHT 404 (455)
T ss_dssp EEECCS
T ss_pred EEEccC
Confidence 777765
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.4e-26 Score=240.54 Aligned_cols=152 Identities=21% Similarity=0.164 Sum_probs=117.4
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
++|++|++++|......+..++.+++|++|++++|......|..+. +++|++|++++|......+..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5899999999864444457899999999999999865555556666 999999999999766666677999999999999
Q ss_pred cCCCccccCccccccccCCccccc--cC-CchhhH-HHHhcCCcccEEEccCcCccc-cCCcccCCCCCcEEeccCCc
Q 036075 81 DGTDIKELPKHKRSKISSNFESFW--PF-QFSEFS-EIMTSMEHLLELHLEGTAIRG-LPVSIEHLTGLVLLNLRDCK 153 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~--~~-~~~~l~-~~l~~l~~L~~L~L~~~~i~~-l~~~i~~l~~L~~L~L~~c~ 153 (474)
++|.+..++....+..+.+|+.|. .+ .++.++ ..+.++++|++|++++|.+++ .|..++.+++|+.|+++++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999998765444556667777765 22 255565 568889999999999998887 57777777666666666554
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.6e-26 Score=234.41 Aligned_cols=298 Identities=15% Similarity=0.136 Sum_probs=177.0
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCC
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGT 83 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~ 83 (474)
++|+++++ .++.+|..+. ++|++|++++|......|..+. +++|++|++++|......|..+.++++|++|++++|
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46777775 5566776555 7777777777654333333444 777777777777655555677777777777777777
Q ss_pred CccccCccccccccCCccccc--cCCchh--hHHHHhcCCcccEEEccCcCccccCCcccCCCCC--cEEeccCCcC--C
Q 036075 84 DIKELPKHKRSKISSNFESFW--PFQFSE--FSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGL--VLLNLRDCKN--L 155 (474)
Q Consensus 84 ~l~~l~~~~~~~~~~~L~~l~--~~~~~~--l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L--~~L~L~~c~~--l 155 (474)
.+.++|.. .+.+|+.|. .+.+.. +|..++++++|++|++++|.+.+ ..++.+++| +.|++++|.. .
T Consensus 80 ~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc
Confidence 77777655 345555543 334443 45667777777777777777665 235556666 7777766654 3
Q ss_pred CccCccCCCC----------------------------------------------------------------------
Q 036075 156 ETLPSTIDGL---------------------------------------------------------------------- 165 (474)
Q Consensus 156 ~~lp~~l~~L---------------------------------------------------------------------- 165 (474)
...|..+..+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 3333333321
Q ss_pred -------------CCCCEEeccCCCCCccCCCCc-----cCCCCCcEEecCCCCCCCCCCCCchhh------HHHhhhcc
Q 036075 166 -------------KSLRNLYLSGCSKLKSMPGNF-----GKVESLEVLDLSGCKGPPLSSSWYLPF------LISLMRRC 221 (474)
Q Consensus 166 -------------~~L~~L~l~~c~~l~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~------l~~l~~~~ 221 (474)
++|++|++++|...+.+|..+ +.+++|+.++++++.. ..+.. .+.. +..+....
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~-~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS-YIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH-HHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchh-hhhcccccCceeEEEcCC
Confidence 255566666655444666666 6777777777776665 22210 0000 11111111
Q ss_pred CCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc---ccHhhhcCCCcceeccccccccc
Q 036075 222 SDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT---LPASINRLFNLEKLELEDCKRLQ 298 (474)
Q Consensus 222 ~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~l~~c~~l~ 298 (474)
.... ..+....+++|++|++++|++. +.+|..++.+++|++|++++|++.. +|..+..+++|++|++++|..-.
T Consensus 312 n~l~--~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMV--HMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SCCC--CCCCCSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred Cccc--cccchhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 1111 1111256777777777777775 3456667777777777777777774 34567777777777777775433
Q ss_pred cCCC----CCCCcceeeccccc
Q 036075 299 SMPQ----LPPSIEEVRVNGCA 316 (474)
Q Consensus 299 ~l~~----l~~~L~~L~i~~c~ 316 (474)
.+|. ..++|+.|++++|.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSC
T ss_pred ccccchhccCccCCEEECcCCC
Confidence 3442 22566777776664
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.2e-25 Score=228.57 Aligned_cols=271 Identities=20% Similarity=0.280 Sum_probs=126.2
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccC
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDG 82 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~ 82 (474)
+|++|++.++ .+..++ .+..+++|++|++++|. +..+|....+++|++|++++|... .++. +.++++|++|++++
T Consensus 47 ~l~~L~l~~~-~i~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred cccEEecCCC-CCccCc-chhhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCC
Confidence 4555555554 233333 24455555555555542 333333222555555555554322 2222 44555555555555
Q ss_pred CCccccCccccccccCCccccc--cCCchhhHH--------------------HHhcCCcccEEEccCcCccccCCcccC
Q 036075 83 TDIKELPKHKRSKISSNFESFW--PFQFSEFSE--------------------IMTSMEHLLELHLEGTAIRGLPVSIEH 140 (474)
Q Consensus 83 ~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~--------------------~l~~l~~L~~L~L~~~~i~~l~~~i~~ 140 (474)
|.+..++. +..+.+|+.|. .+.+..++. .+.++++|++|++++|.+..++. +..
T Consensus 122 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~ 197 (466)
T 1o6v_A 122 NQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAK 197 (466)
T ss_dssp SCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CCCCCChH---HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hcc
Confidence 55444432 22233333332 112222221 14555555555555555555432 555
Q ss_pred CCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhc
Q 036075 141 LTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRR 220 (474)
Q Consensus 141 l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~ 220 (474)
+++|++|++++|......| +..+++|++|++++|.. ..+ ..+..+++|+.|++++|......
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~-------------- 259 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLA-------------- 259 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCG--------------
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc-ccc-hhhhcCCCCCEEECCCCccccch--------------
Confidence 5555555555554322222 34455555555555432 222 23445555555555555543322
Q ss_pred cCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccC
Q 036075 221 CSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSM 300 (474)
Q Consensus 221 ~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 300 (474)
.+..+++|+.|++++|.+.. ++. +..+++|++|++++|++..++. +..+++|+.|++++|+ +..+
T Consensus 260 ----------~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~ 324 (466)
T 1o6v_A 260 ----------PLSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDI 324 (466)
T ss_dssp ----------GGTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCC
T ss_pred ----------hhhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCc
Confidence 24455555555555555543 222 4555555555555555555443 4555555555555553 2222
Q ss_pred CC--CCCCcceeecccc
Q 036075 301 PQ--LPPSIEEVRVNGC 315 (474)
Q Consensus 301 ~~--l~~~L~~L~i~~c 315 (474)
+. -.++|+.|++++|
T Consensus 325 ~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 325 SPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp GGGGGCTTCCEEECCSS
T ss_pred hhhccCccCCEeECCCC
Confidence 21 1235555555554
No 17
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.8e-25 Score=224.80 Aligned_cols=298 Identities=16% Similarity=0.129 Sum_probs=189.1
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
++|++|++++| .++.+| .++.+++|++|++++|. ++.+| ...+++|++|++++|. +..++ ++++++|++|+++
T Consensus 42 ~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD-LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc-CCeEc-cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECC
Confidence 56777777776 455554 57777777777777764 44554 2237777777777765 33343 6677777777777
Q ss_pred CCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCcc
Q 036075 82 GTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPST 161 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~ 161 (474)
+|.+..++ ++.+++|++|++++|.+++++ ++.+++|++|++++|..++.+ .
T Consensus 115 ~N~l~~l~-------------------------~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 115 TNKLTKLD-------------------------VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp SSCCSCCC-------------------------CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--C
T ss_pred CCcCCeec-------------------------CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--c
Confidence 77776543 455666777777777666654 666677777777766555555 2
Q ss_pred CCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEE
Q 036075 162 IDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKL 241 (474)
Q Consensus 162 l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L 241 (474)
+..+++|++|++++|.. ..+| ++.+++|+.|++++|..... ....++.+..+......... +| +..+++|+.|
T Consensus 166 ~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~--ip-~~~l~~L~~L 238 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE--ID-VTPLTQLTYF 238 (457)
T ss_dssp CTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC--CC-CTTCTTCSEE
T ss_pred cccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc--cC-ccccCCCCEE
Confidence 55666777777766543 3344 56666677777766665443 23333333333222222221 34 6777888888
Q ss_pred EccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH---------hhhcCCCcceeccccccccccCCCCCCCcceeec
Q 036075 242 DLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA---------SINRLFNLEKLELEDCKRLQSMPQLPPSIEEVRV 312 (474)
Q Consensus 242 ~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~---------~l~~l~~L~~L~l~~c~~l~~l~~l~~~L~~L~i 312 (474)
++++|++.. +| ++.+++|+.|+++++++..+.- ....+++|+.|++++|+.++.+|.-.+.|+.|++
T Consensus 239 ~l~~N~l~~--~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 239 DCSVNPLTE--LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp ECCSSCCSC--CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred EeeCCcCCC--cC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEech
Confidence 888888764 33 4455666666555554442210 1356788888889888888888766678888888
Q ss_pred cccccccccccc-cccCccccccccccccccccCC
Q 036075 313 NGCASLETLSGA-LKLCNSEYISINCIDDLKLLGC 346 (474)
Q Consensus 313 ~~c~~L~~l~~~-~~l~~l~~~~c~~L~~l~~~~c 346 (474)
++|++|+.+.-. -.+..+.+.+|++|+.|++.+.
T Consensus 315 ~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred hhcccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence 888888887632 2334456778888888877663
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-25 Score=220.73 Aligned_cols=314 Identities=17% Similarity=0.174 Sum_probs=207.2
Q ss_pred CCCccEEEecCcccccccccc-ccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCcccee
Q 036075 1 MPNFEELDLGGCTRLREIHPT-LLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSEL 78 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~-~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L 78 (474)
+++++.|++.++ .++.+|.. +..+++|++|++++|......+..+. +++|++|++++|......|..++++++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 367889999886 57777765 57889999999998754333333555 8999999999987655566778889999999
Q ss_pred eccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccC-CcccCCCCCcEEeccCCcCCCc
Q 036075 79 LLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLET 157 (474)
Q Consensus 79 ~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~c~~l~~ 157 (474)
++++|.+..+|.. .+.++++|++|++++|.+..++ ..++.+++|++|++++|.. +.
T Consensus 123 ~L~~n~l~~l~~~----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~ 179 (390)
T 3o6n_A 123 VLERNDLSSLPRG----------------------IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-TH 179 (390)
T ss_dssp ECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SB
T ss_pred ECCCCccCcCCHH----------------------HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cc
Confidence 9999988877753 2355666666777666666653 3466666677777666542 22
Q ss_pred cCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 158 LPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 158 lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
++ +..+++|+.|++++|... . +...++|+.|++++|.....+.. ..+.+..+........ ..+.+..+++
T Consensus 180 ~~--~~~l~~L~~L~l~~n~l~-~----~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~--~~~~l~~l~~ 249 (390)
T 3o6n_A 180 VD--LSLIPSLFHANVSYNLLS-T----LAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLT--DTAWLLNYPG 249 (390)
T ss_dssp CC--GGGCTTCSEEECCSSCCS-E----EECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCC--CCGGGGGCTT
T ss_pred cc--cccccccceeeccccccc-c----cCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCc--ccHHHcCCCC
Confidence 22 334555666666554321 1 12223455555555543322111 1112221111111111 2345788899
Q ss_pred ccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCC---CCCcceeeccc
Q 036075 238 LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNG 314 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~ 314 (474)
|++|++++|.+.. ..|..+..+++|++|++++|+++.+|..+..+++|++|++++| .++.+|.. .++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 250 LVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred ccEEECCCCcCCC-cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCC
Confidence 9999999999863 4577889999999999999999999888888999999999999 45566532 26888999988
Q ss_pred cccccccccccccCccccccccccccccccCCCchhhhHHHHHHhhc
Q 036075 315 CASLETLSGALKLCNSEYISINCIDDLKLLGCNGFAFSMLKEYLEVM 361 (474)
Q Consensus 315 c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c~~~~~~~~~~~~~~~ 361 (474)
+. ++.+ .+..+++|+.|.+.+ +.+.......+...+
T Consensus 328 N~-i~~~---------~~~~~~~L~~L~l~~-N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 328 NS-IVTL---------KLSTHHTLKNLTLSH-NDWDCNSLRALFRNV 363 (390)
T ss_dssp SC-CCCC---------CCCTTCCCSEEECCS-SCEEHHHHHHHTTTC
T ss_pred Cc-ccee---------CchhhccCCEEEcCC-CCccchhHHHHHHHH
Confidence 75 4444 255677888888888 445555555555443
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.2e-25 Score=215.80 Aligned_cols=274 Identities=16% Similarity=0.252 Sum_probs=217.0
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
+++|++|++++| .+.+++. +..+++|++|++++| .+..+|....+++|++|++++|. +..++. +..+++|+.|++
T Consensus 65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEEC
Confidence 579999999998 5667766 899999999999997 56667754459999999999986 444554 889999999999
Q ss_pred cCCCc-cccCccccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCc
Q 036075 81 DGTDI-KELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLET 157 (474)
Q Consensus 81 ~~~~l-~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~ 157 (474)
++|.. ..++. +..+..|+.|. .+.+..++. +..+++|++|++++|.+.+++. +..+++|+.|++++|.. ..
T Consensus 140 ~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~ 213 (347)
T 4fmz_A 140 GANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQI-TD 213 (347)
T ss_dssp TTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CC
T ss_pred CCCCCcccccc---hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCC-CC
Confidence 99954 33333 45556666654 344455544 7899999999999999999877 88999999999999864 44
Q ss_pred cCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 158 LPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 158 lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
++. +..+++|++|++++|... .++. +..+++|++|++++|.... ++.+..+++
T Consensus 214 ~~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~------------------------~~~~~~l~~ 266 (347)
T 4fmz_A 214 ITP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISD------------------------INAVKDLTK 266 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC------------------------CGGGTTCTT
T ss_pred Cch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCC------------------------ChhHhcCCC
Confidence 443 788999999999997654 3443 8899999999999997553 234678899
Q ss_pred ccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc-ccHhhhcCCCcceeccccccccccCCCC--CCCcceeeccc
Q 036075 238 LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT-LPASINRLFNLEKLELEDCKRLQSMPQL--PPSIEEVRVNG 314 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~~l--~~~L~~L~i~~ 314 (474)
|+.|++++|.+.+ + ..+..+++|++|++++|.+.. .|..+..+++|++|++++|+ ++.++.+ .++|+.|++++
T Consensus 267 L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 267 LKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFAN 342 (347)
T ss_dssp CCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSC
T ss_pred cCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhh
Confidence 9999999999975 4 457889999999999999984 45778999999999999996 5554432 36788888887
Q ss_pred cc
Q 036075 315 CA 316 (474)
Q Consensus 315 c~ 316 (474)
++
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7e-25 Score=223.05 Aligned_cols=278 Identities=17% Similarity=0.264 Sum_probs=214.9
Q ss_pred cccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccc
Q 036075 23 LLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFES 102 (474)
Q Consensus 23 ~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~ 102 (474)
..+++|+.|++.++ .+..+|....+++|++|++++|. +..++. +.++++|++|++++|.+..++. +..+.+|+.
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred hHhccccEEecCCC-CCccCcchhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 35789999999996 46678875559999999999986 555555 8999999999999999998876 556677776
Q ss_pred cc--cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCc
Q 036075 103 FW--PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLK 180 (474)
Q Consensus 103 l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~ 180 (474)
|. .+.+..++. +.++++|++|++++|.+.+++. ++.+++|+.|++.+ ....++. +..+++|++|++++|.. .
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l-~ 190 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKV-S 190 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCC-C
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCcC-C
Confidence 64 455666665 8999999999999999998874 88999999999964 3344443 78899999999999764 3
Q ss_pred cCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCC
Q 036075 181 SMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNL 260 (474)
Q Consensus 181 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l 260 (474)
.++ .+..+++|+.|++++|..........++.+..+....... ..++.+..+++|+.|++++|.+.. ++. +..+
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~l 264 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAP-LSGL 264 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCC--CGG-GTTC
T ss_pred CCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc--ccchhhhcCCCCCEEECCCCcccc--chh-hhcC
Confidence 343 4788899999999999876654444455554443332222 234568889999999999999874 333 8899
Q ss_pred CCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCC--CCCcceeecccccccccc
Q 036075 261 CSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQL--PPSIEEVRVNGCASLETL 321 (474)
Q Consensus 261 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l--~~~L~~L~i~~c~~L~~l 321 (474)
++|++|++++|.+..++. +..+++|++|++++|+ ++.++.+ .++|+.|++++|. ++.+
T Consensus 265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~ 324 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN-ISDI 324 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-CSCC
T ss_pred CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-CCCc
Confidence 999999999999998886 8899999999999984 5555432 3689999999884 4433
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.3e-25 Score=232.98 Aligned_cols=281 Identities=17% Similarity=0.153 Sum_probs=194.3
Q ss_pred ccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCC
Q 036075 4 FEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGT 83 (474)
Q Consensus 4 L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~ 83 (474)
++++++.++..+....+.+..+++|+.|+++++. +..+|....+++|++|++++|.. +.+|. + .+++|++|++++|
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESC
T ss_pred HhheeccccccccccccccccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-C-CCCccceeeccCC
Confidence 3455553433443333335666666666666643 34555322266666666666654 55553 2 5666666666666
Q ss_pred Ccc-ccCccccccccCCccccc--cCCchhh---HHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCc
Q 036075 84 DIK-ELPKHKRSKISSNFESFW--PFQFSEF---SEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLET 157 (474)
Q Consensus 84 ~l~-~l~~~~~~~~~~~L~~l~--~~~~~~l---~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~ 157 (474)
... .. ....+.+|+.|. .+.+... +..+..+++|++|++++|.+..+|..+..+++|+.|++++|.....
T Consensus 339 ~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 339 KGSISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp SSCEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred cCccch----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence 322 21 122333444432 2233332 5678889999999999999998888899999999999999876666
Q ss_pred cC-ccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC-CCCC
Q 036075 158 LP-STIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGL 235 (474)
Q Consensus 158 lp-~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l 235 (474)
.| ..+..+++|++|++++|......|..++.+++|++|++++|.... ..+|. +.++
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~l 472 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD----------------------NTLSNVFANT 472 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------------------GEECSCCTTC
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC----------------------cchHHhhccC
Confidence 66 568889999999999988777788888899999999999886431 01232 6788
Q ss_pred CcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCC----CCCCccee
Q 036075 236 CSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQ----LPPSIEEV 310 (474)
Q Consensus 236 ~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~----l~~~L~~L 310 (474)
++|+.|++++|++. +..|..+..+++|++|++++|+++.+ |..+..+++|++|++++|+ ++.+|. +|.+|+.|
T Consensus 473 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 473 TNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFF 550 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEE
T ss_pred CCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEE
Confidence 89999999999886 34567788899999999999998866 7788899999999999985 666654 34457777
Q ss_pred eccccc
Q 036075 311 RVNGCA 316 (474)
Q Consensus 311 ~i~~c~ 316 (474)
++++++
T Consensus 551 ~l~~N~ 556 (606)
T 3vq2_A 551 NLTNNS 556 (606)
T ss_dssp ECCSCC
T ss_pred EccCCC
Confidence 777654
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.5e-25 Score=224.50 Aligned_cols=292 Identities=21% Similarity=0.201 Sum_probs=210.6
Q ss_pred CCCccEEEecCcccccccc-ccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhh--hcccCccc
Q 036075 1 MPNFEELDLGGCTRLREIH-PTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREI--VGSRKCLS 76 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~--~~~l~~L~ 76 (474)
+++|++|++++|.....++ ..+..+++|++|+|++|......|..+. +++|++|++++|......+.. +.++++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 5789999999987665664 5688999999999999876656677777 999999999998766555554 88899999
Q ss_pred eeeccCCCccccCccccccccCCccccc--cCCchhh-HHHHhcC--CcccEEEccCcCccccCCc---------ccCCC
Q 036075 77 ELLLDGTDIKELPKHKRSKISSNFESFW--PFQFSEF-SEIMTSM--EHLLELHLEGTAIRGLPVS---------IEHLT 142 (474)
Q Consensus 77 ~L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l-~~~l~~l--~~L~~L~L~~~~i~~l~~~---------i~~l~ 142 (474)
+|++++|.+..+.....+..+.+|+.|. .+.+... +..+..+ .+|+.|+++++.+..++.. +..++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999998775543355556666654 2333322 3333333 4566666666666554321 22445
Q ss_pred CCcEEeccCCcCCCccCcc-------------------------------------CC--CCCCCCEEeccCCCCCccCC
Q 036075 143 GLVLLNLRDCKNLETLPST-------------------------------------ID--GLKSLRNLYLSGCSKLKSMP 183 (474)
Q Consensus 143 ~L~~L~L~~c~~l~~lp~~-------------------------------------l~--~L~~L~~L~l~~c~~l~~~~ 183 (474)
+|++|++++|......|.. +. ..++|++|++++|......|
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 5666666665432211110 11 23689999999988888888
Q ss_pred CCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCC
Q 036075 184 GNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSL 263 (474)
Q Consensus 184 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L 263 (474)
..++.+++|++|++++|..... ....+.++++|++|++++|.+. +..+..+..+++|
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 349 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKI----------------------DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKL 349 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTC
T ss_pred hhcccCCCCCEEECCCCccccc----------------------ChhHhcCcccCCEEECCCCccC-CcChhHhcCcccC
Confidence 8899999999999999875431 1113778899999999999985 3346778899999
Q ss_pred CEEeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCC----CCCCcceeeccccc
Q 036075 264 KELYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQ----LPPSIEEVRVNGCA 316 (474)
Q Consensus 264 ~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~----l~~~L~~L~i~~c~ 316 (474)
++|++++|++..+ |..+..+++|++|++++| .++.+|. -.++|+.|++++++
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 9999999999866 778999999999999998 4555553 12578888888765
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=226.97 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=96.4
Q ss_pred CCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC-CCCCCcccEE
Q 036075 163 DGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKL 241 (474)
Q Consensus 163 ~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L 241 (474)
..+++|++|++++|...+..|..++.+++|++|++++|.....+ .+|. +..+++|++|
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---------------------~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS---------------------KIAEMTTQMKSLQQL 379 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH---------------------HHHHHHTTCTTCCEE
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc---------------------cchHHHhhCCCCCEE
Confidence 34556666666665555555555666666666666665543200 1122 5677888888
Q ss_pred EccCCCCCCCCccc-cccCCCCCCEEeCCCCCCC-cccHhhhcCCCcceeccccccccccCCCC---CCCcceeeccccc
Q 036075 242 DLSDSNLGEGAIPN-DIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCA 316 (474)
Q Consensus 242 ~l~~~~l~~~~~~~-~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~ 316 (474)
++++|.+.. .+|. .+..+++|++|++++|+++ .+|..+. ++|+.|++++| .++.+|.- .++|+.|+++++
T Consensus 380 ~Ls~N~l~~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N- 454 (520)
T 2z7x_B 380 DISQNSVSY-DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN- 454 (520)
T ss_dssp ECCSSCCBC-CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-
T ss_pred ECCCCcCCc-ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-
Confidence 888888753 2454 3677788888888888875 4444332 68888888888 45566641 257888888887
Q ss_pred cccccccccccCccccccccccccccccCC
Q 036075 317 SLETLSGALKLCNSEYISINCIDDLKLLGC 346 (474)
Q Consensus 317 ~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c 346 (474)
.++.++.. .+..+++|+.+.+.++
T Consensus 455 ~l~~l~~~------~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 455 QLKSVPDG------IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCCCCTT------TTTTCTTCCEEECCSS
T ss_pred cCCccCHH------HhccCCcccEEECcCC
Confidence 46655533 2556677777777663
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=7.5e-25 Score=228.16 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=97.2
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
..+.++++++ .++.+|..+. ++|++|++++|......|..+. +++|++|++++|......|..+.++++|++|+++
T Consensus 32 ~~~~l~ls~~-~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNR-NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTS-CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCC-CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3467888876 5667776554 7888888888654333334455 8888888888876555557778888888888888
Q ss_pred CCCccccCccccccccCCccccc--cCCchhh--HHHHhcCCcccEEEccCcCccccCCcccCCCCC--cEEeccCCcC
Q 036075 82 GTDIKELPKHKRSKISSNFESFW--PFQFSEF--SEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGL--VLLNLRDCKN 154 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l--~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L--~~L~L~~c~~ 154 (474)
+|.+.++|.. .+.+|+.|. .+.+..+ |..++++++|++|++++|.+... .+..+++| +.|++++|..
T Consensus 109 ~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCcCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 8888877765 455555553 4445544 36677788888888888777652 34455555 7777777654
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.9e-25 Score=223.37 Aligned_cols=287 Identities=20% Similarity=0.220 Sum_probs=219.5
Q ss_pred CCccEEEecCccccccc-cccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREI-HPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~-~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
+++++|+|+++. +..+ +..+..+++|++|+|++|......|..+. +++|++|+|++|......+..+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 578999999974 4444 56788999999999999755445466666 99999999999764433334678899999999
Q ss_pred ccCCCccccCccccccccCCccccc--cCCchhh-HHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCC
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFW--PFQFSEF-SEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNL 155 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l 155 (474)
+++|.+..++.. .+..+.+|+.|. .+.+..+ +..+.++++|++|++++|.++.++. .+..+++|+.|++++|...
T Consensus 111 Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 999998876442 234455666654 3344443 4567889999999999999998875 4889999999999998765
Q ss_pred CccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCC--CCC
Q 036075 156 ETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP--SLS 233 (474)
Q Consensus 156 ~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~ 233 (474)
...+..+..+++|+.|++++|..+..++.......+|+.|++++|.... +| .+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~~~~ 245 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA------------------------VPYLAVR 245 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS------------------------CCHHHHT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc------------------------cCHHHhc
Confidence 5556678899999999999999888888877777799999999987553 22 267
Q ss_pred CCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCC----CCCCcc
Q 036075 234 GLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQ----LPPSIE 308 (474)
Q Consensus 234 ~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~----l~~~L~ 308 (474)
++++|+.|++++|.+.. ..+..+..+++|++|++++|++..+ |..+..+++|++|++++| .++.++. -.++|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 246 HLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCC
T ss_pred CccccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccC
Confidence 78889999999988863 3345678888999999999988855 667888899999999888 4555553 124677
Q ss_pred eeeccccc
Q 036075 309 EVRVNGCA 316 (474)
Q Consensus 309 ~L~i~~c~ 316 (474)
.|++++.+
T Consensus 324 ~L~l~~N~ 331 (477)
T 2id5_A 324 TLILDSNP 331 (477)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 77777654
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=232.03 Aligned_cols=221 Identities=23% Similarity=0.227 Sum_probs=127.5
Q ss_pred HHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCC--------
Q 036075 112 SEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMP-------- 183 (474)
Q Consensus 112 ~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~-------- 183 (474)
+..+..+++|+.|+++++.+.++|..+..+ +|+.|++++|.. ..+|. ..+++|+.|++++|......+
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-cccCc--ccccccCEEeCcCCccccccccccCCCCC
Confidence 455677889999999999999999888888 899999988764 35554 345555555555554433332
Q ss_pred ----------------CCccCCCCCcEEecCCCCCCCCCC-CCchhhHHHhhhccCCCCccCCC--CCCCCCcccEEEcc
Q 036075 184 ----------------GNFGKVESLEVLDLSGCKGPPLSS-SWYLPFLISLMRRCSDPMALGFP--SLSGLCSLRKLDLS 244 (474)
Q Consensus 184 ----------------~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~l~--~l~~l~~L~~L~l~ 244 (474)
..+..+++|+.|++++|.....+. ...++.+..+.... +......+ .+.++++|++|+++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccC-CccccccchhhhhcCCCCCEEeCc
Confidence 223334444444444443221111 11112222211111 11111112 25666777777777
Q ss_pred CCCCCCCCccccccCCCCCCEEeCCCCCCC--cccHhhhcCCCcceeccccccccccCCCC---CCCcceeecccccccc
Q 036075 245 DSNLGEGAIPNDIGNLCSLKELYLSKNSFI--TLPASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCASLE 319 (474)
Q Consensus 245 ~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~~L~ 319 (474)
+|.+. +..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|+.-...|.. .++|+.|++++| .++
T Consensus 430 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~ 507 (570)
T 2z63_A 430 HTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLK 507 (570)
T ss_dssp TSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred CCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCC
Confidence 77664 334556667777777777777665 46667777777777777777433332321 256777777776 344
Q ss_pred ccccccccCccccccccccccccccC
Q 036075 320 TLSGALKLCNSEYISINCIDDLKLLG 345 (474)
Q Consensus 320 ~l~~~~~l~~l~~~~c~~L~~l~~~~ 345 (474)
.++.. .+.++++|+.+++.+
T Consensus 508 ~~~~~------~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 508 SVPDG------IFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCCTT------TTTTCTTCCEEECCS
T ss_pred CCCHH------HhhcccCCcEEEecC
Confidence 44322 255667777777665
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.8e-24 Score=225.22 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=91.4
Q ss_pred CCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCC-CCCCCCcccEE
Q 036075 163 DGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP-SLSGLCSLRKL 241 (474)
Q Consensus 163 ~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~l~~L~~L 241 (474)
..+++|++|++++|...+..|..++.+++|+.|++++|.....+ .+| .+.++++|+.|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF---------------------KVALMTKNMSSLETL 408 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------HHHHTTTTCTTCCEE
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------cchhhhcCCCCCCEE
Confidence 45566777777766655556666666777777777766544211 011 15667777777
Q ss_pred EccCCCCCCCCccc-cccCCCCCCEEeCCCCCCC-cccHhhhcCCCcceeccccccccccCCCC---CCCcceeeccccc
Q 036075 242 DLSDSNLGEGAIPN-DIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCA 316 (474)
Q Consensus 242 ~l~~~~l~~~~~~~-~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~ 316 (474)
++++|.+.. .+|. .+..+++|++|++++|+++ .+|..+. ++|++|++++| .++.+|.- .++|+.|+++++.
T Consensus 409 ~l~~N~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 409 DVSLNSLNS-HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp ECTTSCCBS-CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred ECCCCcCCC-ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 777777753 2333 4666777777777777765 3332222 57777777777 45566541 2467777777763
Q ss_pred cccccccccccCccccccccccccccccC
Q 036075 317 SLETLSGALKLCNSEYISINCIDDLKLLG 345 (474)
Q Consensus 317 ~L~~l~~~~~l~~l~~~~c~~L~~l~~~~ 345 (474)
++.++.. .+..+++|+.+++.+
T Consensus 485 -l~~l~~~------~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 485 -LKSVPDG------VFDRLTSLQYIWLHD 506 (562)
T ss_dssp -CCCCCTT------STTTCTTCCCEECCS
T ss_pred -CCCCCHH------HHhcCCCCCEEEecC
Confidence 5555432 245566666666665
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=235.23 Aligned_cols=311 Identities=20% Similarity=0.154 Sum_probs=204.7
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCccc-CCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTL-PDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++|++|+|++|......+..+..+++|++|+|++|.....+ |..+. +++|++|+|++|......|..+.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 68999999998654455688899999999999998777777 55566 99999999999887666788999999999999
Q ss_pred ccCCCccc-cCccccccccCCccccc--cCCchhh--HHHHhcCCcccEEEccCcCcccc-CCcccCC--CCCcEEeccC
Q 036075 80 LDGTDIKE-LPKHKRSKISSNFESFW--PFQFSEF--SEIMTSMEHLLELHLEGTAIRGL-PVSIEHL--TGLVLLNLRD 151 (474)
Q Consensus 80 L~~~~l~~-l~~~~~~~~~~~L~~l~--~~~~~~l--~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l--~~L~~L~L~~ 151 (474)
+++|.+.+ ++....+..+.+|+.|. .+.+..+ +..++++++|++|++++|.+.++ +..++.+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 99999875 45544566677777765 4444443 35688999999999999988764 4556655 6777777777
Q ss_pred CcCCCccCccCCCCCC------CCEEeccCCCCCccCCCCc------------------------------------cC-
Q 036075 152 CKNLETLPSTIDGLKS------LRNLYLSGCSKLKSMPGNF------------------------------------GK- 188 (474)
Q Consensus 152 c~~l~~lp~~l~~L~~------L~~L~l~~c~~l~~~~~~l------------------------------------~~- 188 (474)
|......|..+..+.+ |+.|++++|......+..+ ..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 7655555555444443 6777776663322222111 11
Q ss_pred -CCCCcEEecCCCCCCCCC--CCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCE
Q 036075 189 -VESLEVLDLSGCKGPPLS--SSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKE 265 (474)
Q Consensus 189 -l~~L~~L~l~~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~ 265 (474)
.++|+.|++++|...... ....++.+..+....+.........+.++++|++|++++|.+. +..+..+..+++|++
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCE
Confidence 145666666666543321 1223333333322222222222223677778888888888775 334667777778888
Q ss_pred EeCCCCCCCcccH-hhhcCCCcceeccccccccccCCCCCCCcceeecccc
Q 036075 266 LYLSKNSFITLPA-SINRLFNLEKLELEDCKRLQSMPQLPPSIEEVRVNGC 315 (474)
Q Consensus 266 L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~l~~~L~~L~i~~c 315 (474)
|++++|.+..++. .+..+++|++|++++|. ++.++. .++|+.|+++++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~L~~L~l~~N 391 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF-IPSIPDIFLSGN 391 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-CCSCSEEEEESC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC-CCCcchhccCCC
Confidence 8888887776553 46777777777777763 444443 234555554443
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=8.5e-24 Score=205.31 Aligned_cols=281 Identities=18% Similarity=0.246 Sum_probs=171.4
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
+++.++++++ .++.+|..+. ++|++|++++|......|..+. +++|++|++++|......|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3555565554 3445554442 4566666666542222233333 6666666666655444445556666666666666
Q ss_pred CCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCC--Ccc
Q 036075 82 GTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNL--ETL 158 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l--~~l 158 (474)
+|.+..+|.. +. ++|++|++++|.+..++. .++.+++|+.|++++|... ...
T Consensus 111 ~n~l~~l~~~-----------------------~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 111 KNHLVEIPPN-----------------------LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp SSCCCSCCSS-----------------------CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred CCcCCccCcc-----------------------cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 6665555432 11 456666666666666554 3566666666666665532 133
Q ss_pred CccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcc
Q 036075 159 PSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSL 238 (474)
Q Consensus 159 p~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L 238 (474)
+..+..+ +|++|++++|. +..+|..+. ++|++|++++|.... .....+.++++|
T Consensus 166 ~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~----------------------~~~~~l~~l~~L 219 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQA----------------------IELEDLLRYSKL 219 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCC----------------------CCTTSSTTCTTC
T ss_pred cccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCc----------------------cCHHHhcCCCCC
Confidence 4444555 66666666644 333444332 566666666665432 112237888999
Q ss_pred cEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCC-----C-----CCCcc
Q 036075 239 RKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQ-----L-----PPSIE 308 (474)
Q Consensus 239 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-----l-----~~~L~ 308 (474)
+.|++++|.+.. ..+..+..+++|++|++++|++..+|..+..+++|++|++++++ ++.++. . .++++
T Consensus 220 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 220 YRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBS
T ss_pred CEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccccccccccccc
Confidence 999999999864 34457889999999999999999999999999999999999984 555542 1 24678
Q ss_pred eeecccccccc-ccccccccCccccccccccccccccC
Q 036075 309 EVRVNGCASLE-TLSGALKLCNSEYISINCIDDLKLLG 345 (474)
Q Consensus 309 ~L~i~~c~~L~-~l~~~~~l~~l~~~~c~~L~~l~~~~ 345 (474)
.|++.+++-.. .+.. -.|..++.|+.+.+.+
T Consensus 298 ~L~l~~N~~~~~~~~~------~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQP------ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp EEECCSSSSCGGGSCG------GGGTTBCCSTTEEC--
T ss_pred ceEeecCcccccccCc------ccccccchhhhhhccc
Confidence 88888876221 1111 2366677777666654
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-24 Score=226.37 Aligned_cols=311 Identities=17% Similarity=0.171 Sum_probs=197.3
Q ss_pred CCccEEEecCcccccccccc-ccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHPT-LLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~-~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++++.|++.++ .+..+|.. ++.+++|++|+|++|......|..+. +++|++|+|++|......|..++++++|++|+
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 57788888886 56666654 56788899999988754433344555 88899999988875555566778888899999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCcc
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETL 158 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~l 158 (474)
|++|.+..+|.. .+.++++|++|++++|.+..++. .++.+++|++|++++|. +..+
T Consensus 130 L~~n~l~~l~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 186 (597)
T 3oja_B 130 LERNDLSSLPRG----------------------IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV 186 (597)
T ss_dssp CCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred eeCCCCCCCCHH----------------------HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCc
Confidence 998888877653 24566667777777776666533 46667777777776664 2333
Q ss_pred CccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcc
Q 036075 159 PSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSL 238 (474)
Q Consensus 159 p~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L 238 (474)
+ +..+++|+.|++++|.... +....+|+.|++++|.....+... .+.+..+....+... ..+.+..+++|
T Consensus 187 ~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~--~~~~l~~l~~L 256 (597)
T 3oja_B 187 D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLT--DTAWLLNYPGL 256 (597)
T ss_dssp C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCC--CCGGGGGCTTC
T ss_pred C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCC--CChhhccCCCC
Confidence 2 3345566666666543211 223334555555555433222111 111221111111111 12447778888
Q ss_pred cEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCC---CCCcceeecccc
Q 036075 239 RKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGC 315 (474)
Q Consensus 239 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c 315 (474)
+.|++++|.+. +..|..++.+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|.. .++|+.|+++++
T Consensus 257 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 257 VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred CEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC
Confidence 88888888886 345777888888888888888888888777788888888888884 4455532 257888888887
Q ss_pred ccccccccccccCccccccccccccccccCCCchhhhHHHHHHh
Q 036075 316 ASLETLSGALKLCNSEYISINCIDDLKLLGCNGFAFSMLKEYLE 359 (474)
Q Consensus 316 ~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c~~~~~~~~~~~~~ 359 (474)
. +..+ .+..+++|+.|.+.++. +.......++.
T Consensus 335 ~-l~~~---------~~~~~~~L~~L~l~~N~-~~~~~~~~~~~ 367 (597)
T 3oja_B 335 S-IVTL---------KLSTHHTLKNLTLSHND-WDCNSLRALFR 367 (597)
T ss_dssp C-CCCC---------CCCTTCCCSEEECCSSC-EEHHHHHHHTT
T ss_pred C-CCCc---------ChhhcCCCCEEEeeCCC-CCChhHHHHHH
Confidence 5 3333 24556777777777743 33444444443
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=3.9e-25 Score=212.92 Aligned_cols=251 Identities=19% Similarity=0.251 Sum_probs=216.9
Q ss_pred CCccEEEecCccccc--cccccccccCcccEEecCC-CCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccce
Q 036075 2 PNFEELDLGGCTRLR--EIHPTLLLHKKIILLNLKD-CKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSE 77 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~--~~~~~~~~l~~L~~L~L~~-c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~ 77 (474)
.++++|+|+++...+ .+|..++.+++|++|++++ +.....+|..+. +++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999986666 7899999999999999996 555558888777 999999999998877789999999999999
Q ss_pred eeccCCCcc-ccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCcc-ccCCcccCCC-CCcEEeccCCcC
Q 036075 78 LLLDGTDIK-ELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIR-GLPVSIEHLT-GLVLLNLRDCKN 154 (474)
Q Consensus 78 L~L~~~~l~-~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~-~l~~~i~~l~-~L~~L~L~~c~~ 154 (474)
|++++|.+. .+| ..+..+++|++|++++|.+. .+|..++.++ +|++|++++|..
T Consensus 130 L~Ls~N~l~~~~p-----------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLP-----------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCC-----------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred EeCCCCccCCcCC-----------------------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 999999887 344 34788999999999999999 6899999998 999999999987
Q ss_pred CCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCC
Q 036075 155 LETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSG 234 (474)
Q Consensus 155 l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 234 (474)
...+|..+..++ |++|++++|......|..++.+++|+.|++++|.... ..+.+..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~ 242 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGKVGL 242 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGGCCC
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecCcccc
Confidence 778888888887 9999999988777788889999999999999987542 1233667
Q ss_pred CCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC-cccHhhhcCCCcceeccccccccccCC
Q 036075 235 LCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDCKRLQSMP 301 (474)
Q Consensus 235 l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~ 301 (474)
+++|++|++++|++. +.+|..+..+++|++|++++|+++ .+|.. ..+++|+.|++++++.+...|
T Consensus 243 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 899999999999996 458899999999999999999998 67765 889999999999998776543
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.3e-24 Score=208.81 Aligned_cols=128 Identities=27% Similarity=0.378 Sum_probs=73.3
Q ss_pred CCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhc
Q 036075 141 LTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRR 220 (474)
Q Consensus 141 l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~ 220 (474)
+++|++|++++|. ++.+|..+..+++|++|++++|.. ..+|..++.+++|++|++++|....
T Consensus 182 l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~---------------- 243 (328)
T 4fcg_A 182 LVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALR---------------- 243 (328)
T ss_dssp STTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCC----------------
T ss_pred CCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchh----------------
Confidence 4555555555543 234444455555555555555432 2344445555555555555544321
Q ss_pred cCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC-cccHhhhcCCCcceeccccc
Q 036075 221 CSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI-TLPASINRLFNLEKLELEDC 294 (474)
Q Consensus 221 ~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~c 294 (474)
.+|. ++++++|++|++++|++. +.+|..+..+++|++|+|++|++. .+|.++.++++|+.+++...
T Consensus 244 -------~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 244 -------NYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -------BCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -------hhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 1121 455666666666666554 456777777788888888887554 77888888888888877643
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=226.95 Aligned_cols=332 Identities=17% Similarity=0.166 Sum_probs=206.6
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCccc-CCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTL-PDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
+++++|++++|......+..+..+++|++|++++|. +..+ |..+. +++|++|++++|......+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 468999999975433334578899999999999985 4444 44455 99999999999875555567889999999999
Q ss_pred ccCCCccccCccccccccCCccccc--cCCchh--hHHHHhcCCcccEEEccCcCccccC-CcccCCCCC----cEEecc
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFW--PFQFSE--FSEIMTSMEHLLELHLEGTAIRGLP-VSIEHLTGL----VLLNLR 150 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~--l~~~l~~l~~L~~L~L~~~~i~~l~-~~i~~l~~L----~~L~L~ 150 (474)
+++|.+..++... +..+.+|+.|. .+.+.. +|..++++++|++|++++|.++.++ ..++.+++| +.|+++
T Consensus 107 L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9999988877642 55566677665 344443 6788888999999999988888754 456666666 666666
Q ss_pred CCcCCCc-------------------------------------------------------------------------
Q 036075 151 DCKNLET------------------------------------------------------------------------- 157 (474)
Q Consensus 151 ~c~~l~~------------------------------------------------------------------------- 157 (474)
+|.....
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 6542221
Q ss_pred --------cCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCC
Q 036075 158 --------LPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGF 229 (474)
Q Consensus 158 --------lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 229 (474)
.|..+..+++|++|++++|. +..+|..+..+ +|+.|++++|.....+. ..++.+..+...... .....
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~-~~~~~ 341 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNK-GGNAF 341 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCB-SCCBC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCc-ccccc
Confidence 12223345566666666543 23455555555 66666666665543332 233333322221111 11111
Q ss_pred CCCCCCCcccEEEccCCCCCCCC-ccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCC----CCC
Q 036075 230 PSLSGLCSLRKLDLSDSNLGEGA-IPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMP----QLP 304 (474)
Q Consensus 230 ~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~----~l~ 304 (474)
+ ...+++|++|++++|.+.... .+..+..+++|++|++++|.+..++..+..+++|++|++++|......+ .-.
T Consensus 342 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 342 S-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp C-CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred c-cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 1 256677777777777765311 1455667777777777777777666667777777777777775433322 112
Q ss_pred CCcceeeccccccccccccccccCccccccccccccccccCCC
Q 036075 305 PSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGCN 347 (474)
Q Consensus 305 ~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c~ 347 (474)
++|+.|++++|.-....+ -.+..+++|+.|.+.+|.
T Consensus 421 ~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFN-------GIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp TTCCEEECTTSCCEECCT-------TTTTTCTTCCEEECTTCE
T ss_pred CCCCEEeCcCCcccccch-------hhhhcCCcCcEEECcCCc
Confidence 567777777764222211 123445556555555543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=5.2e-24 Score=231.96 Aligned_cols=308 Identities=18% Similarity=0.162 Sum_probs=188.6
Q ss_pred CCCccEEEecCccccccc-cccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhh--hcccCccc
Q 036075 1 MPNFEELDLGGCTRLREI-HPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREI--VGSRKCLS 76 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~-~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~--~~~l~~L~ 76 (474)
+++|++|+|++|.....+ |..++++++|++|+|++|......|..+. +++|++|+|++|......+.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 467777777777666666 46677777777777777665555566665 777777777777655544443 67777777
Q ss_pred eeeccCCCccccCccccccccCCccccc--cCCchh-hHHHHhcC--CcccEEEccCcCccc-cCCcccCCCC------C
Q 036075 77 ELLLDGTDIKELPKHKRSKISSNFESFW--PFQFSE-FSEIMTSM--EHLLELHLEGTAIRG-LPVSIEHLTG------L 144 (474)
Q Consensus 77 ~L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~-l~~~l~~l--~~L~~L~L~~~~i~~-l~~~i~~l~~------L 144 (474)
+|++++|.+..++....+..+.+|+.|. .+.+.. .+..+..+ ++|+.|++++|.+.. .|..++.+.+ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 7777777777665444455566666654 222222 23334444 677777777777665 4555555554 7
Q ss_pred cEEeccCCcCCCccCccC------------------------------------CC--CCCCCEEeccCCCCCccCCCCc
Q 036075 145 VLLNLRDCKNLETLPSTI------------------------------------DG--LKSLRNLYLSGCSKLKSMPGNF 186 (474)
Q Consensus 145 ~~L~L~~c~~l~~lp~~l------------------------------------~~--L~~L~~L~l~~c~~l~~~~~~l 186 (474)
+.|++++|......+..+ .. .++|+.|++++|......+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 777777764332222111 11 2567777777766655566667
Q ss_pred cCCCCCcEEecCCCCCCCCC--CCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCC
Q 036075 187 GKVESLEVLDLSGCKGPPLS--SSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLK 264 (474)
Q Consensus 187 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~ 264 (474)
+.+++|+.|++++|...... ....++++..+....+.........+.++++|+.|++++|++.. ..+..+..+++|+
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQ 365 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCC
Confidence 77777777777777654332 22334444443333222222222236777777777777777743 2334566777777
Q ss_pred EEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCCCCCcceeeccc
Q 036075 265 ELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLPPSIEEVRVNG 314 (474)
Q Consensus 265 ~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l~~~L~~L~i~~ 314 (474)
+|++++|.++.++. +++|+.|++++| .++.+|....+++.|++++
T Consensus 366 ~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 366 TLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp EEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCCCTTCCEEECCS
T ss_pred EEECCCCCCCcccC----CCCcchhccCCC-Ccccccccccccceeeccc
Confidence 77777777776553 677777777776 3456666666677766654
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.5e-24 Score=212.00 Aligned_cols=281 Identities=17% Similarity=0.163 Sum_probs=214.0
Q ss_pred ccCcccEEecCCCCCCcccCCcc-c-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcc
Q 036075 24 LHKKIILLNLKDCKSLTTLPDKI-C-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFE 101 (474)
Q Consensus 24 ~l~~L~~L~L~~c~~l~~lp~~~-~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~ 101 (474)
.++++++|+++++ .++.+|..+ . +++|++|++++|......+..+..+++|++|++++|.+..++.
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP----------- 110 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----------
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----------
Confidence 5689999999986 477788753 3 8999999999987555555688999999999999999887654
Q ss_pred ccccCCchhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCc
Q 036075 102 SFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLK 180 (474)
Q Consensus 102 ~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~ 180 (474)
..++++++|++|++++|.++++|.. ++.+++|++|++++|......|..+..+++|++|++++|....
T Consensus 111 -----------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 111 -----------HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred -----------HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 2467899999999999999999876 5899999999999997655556778999999999999976543
Q ss_pred cCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCC
Q 036075 181 SMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNL 260 (474)
Q Consensus 181 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l 260 (474)
+ .++.+++|+.|++++|......... .+..+......... +| ....++|+.|++++|.+.+ . ..+..+
T Consensus 180 -~--~~~~l~~L~~L~l~~n~l~~~~~~~---~L~~L~l~~n~l~~--~~-~~~~~~L~~L~l~~n~l~~--~-~~l~~l 247 (390)
T 3o6n_A 180 -V--DLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINV--VR-GPVNVELTILKLQHNNLTD--T-AWLLNY 247 (390)
T ss_dssp -C--CGGGCTTCSEEECCSSCCSEEECCS---SCSEEECCSSCCCE--EE-CCCCSSCCEEECCSSCCCC--C-GGGGGC
T ss_pred -c--ccccccccceeecccccccccCCCC---cceEEECCCCeeee--cc-ccccccccEEECCCCCCcc--c-HHHcCC
Confidence 3 3678899999999998755432221 12222111111111 11 2335789999999999975 2 578899
Q ss_pred CCCCEEeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCCC---CCCcceeeccccccccccccccccCcccccccc
Q 036075 261 CSLKELYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQL---PPSIEEVRVNGCASLETLSGALKLCNSEYISIN 336 (474)
Q Consensus 261 ~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~ 336 (474)
++|++|++++|.+..+ |..+..+++|++|++++| .++.+|.. .++|+.|+++++ .++.++.. +..++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~l~ 318 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERN-------QPQFD 318 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGG-------HHHHT
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcc-------ccccC
Confidence 9999999999999965 788999999999999998 45555532 368999999998 46655422 45667
Q ss_pred ccccccccCCCc
Q 036075 337 CIDDLKLLGCNG 348 (474)
Q Consensus 337 ~L~~l~~~~c~~ 348 (474)
+|+.|.+.++..
T Consensus 319 ~L~~L~L~~N~i 330 (390)
T 3o6n_A 319 RLENLYLDHNSI 330 (390)
T ss_dssp TCSEEECCSSCC
T ss_pred cCCEEECCCCcc
Confidence 777777777543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.7e-23 Score=211.69 Aligned_cols=283 Identities=19% Similarity=0.153 Sum_probs=220.9
Q ss_pred cccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccC
Q 036075 19 HPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISS 98 (474)
Q Consensus 19 ~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~ 98 (474)
+.+++.+++|++|++++| .++.+|....+++|++|++++|. +..++ ++.+++|++|++++|.+..++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~~--------- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTNLD--------- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC---------
T ss_pred ccChhHcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCceee---------
Confidence 356778999999999997 56667754449999999999986 44454 888999999999999887653
Q ss_pred CccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCC
Q 036075 99 NFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSK 178 (474)
Q Consensus 99 ~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~ 178 (474)
++++++|++|++++|.++++| ++.+++|++|++++|. ++.++ +..+++|++|++++|..
T Consensus 102 ----------------~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 102 ----------------VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp ----------------CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSC
T ss_pred ----------------cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCc
Confidence 567899999999999999986 8999999999999986 44454 78899999999999987
Q ss_pred CccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCcccccc
Q 036075 179 LKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIG 258 (474)
Q Consensus 179 l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~ 258 (474)
+..+ .++.+++|+.|++++|.....+ ...++.+..+.......... .++.+++|+.|++++|++.. +| +.
T Consensus 161 ~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--ip--~~ 230 (457)
T 3bz5_A 161 ITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID--VT 230 (457)
T ss_dssp CCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--CC--CT
T ss_pred cccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--cC--cc
Confidence 7776 4788999999999999877654 44555555443333332222 37888999999999999975 66 78
Q ss_pred CCCCCCEEeCCCCCCCcccHhhhcCC----------CcceeccccccccccCCC-CCCCcceeeccccccccccccc-cc
Q 036075 259 NLCSLKELYLSKNSFITLPASINRLF----------NLEKLELEDCKRLQSMPQ-LPPSIEEVRVNGCASLETLSGA-LK 326 (474)
Q Consensus 259 ~l~~L~~L~L~~~~l~~lp~~l~~l~----------~L~~L~l~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l~~~-~~ 326 (474)
.+++|+.|++++|+++.+| +..++ +|+.|++++|+.+..+|. -.++|+.|++++|..++.++.. ..
T Consensus 231 ~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred ccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCc
Confidence 8999999999999998776 33444 455666777766665552 2378999999999988888743 34
Q ss_pred cCccccccccccccccccCCC
Q 036075 327 LCNSEYISINCIDDLKLLGCN 347 (474)
Q Consensus 327 l~~l~~~~c~~L~~l~~~~c~ 347 (474)
+..+.+.++++|+.|.+.++.
T Consensus 309 L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCC
T ss_pred ceEechhhcccCCEEECCCCc
Confidence 566778888889888877643
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=8.5e-24 Score=219.49 Aligned_cols=312 Identities=16% Similarity=0.155 Sum_probs=177.8
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
|.....+.++ ..++++|..+. ++|++|++++|......|..+. +++|++|++++|......|..+.++++|++|++
T Consensus 5 ~~~~~c~~~~-~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 5 DASGVCDGRS-RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp CTTSEEECTT-SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEECCC-CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3444555655 36788888664 8999999999875444455566 999999999999766666688999999999999
Q ss_pred cCCCccccCccccccccCCccccc--cCCchh--hHHHHhcCCcccEEEccCcC-ccccC-CcccCCCCCcEEeccCCcC
Q 036075 81 DGTDIKELPKHKRSKISSNFESFW--PFQFSE--FSEIMTSMEHLLELHLEGTA-IRGLP-VSIEHLTGLVLLNLRDCKN 154 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~--l~~~l~~l~~L~~L~L~~~~-i~~l~-~~i~~l~~L~~L~L~~c~~ 154 (474)
++|.+..++.. .+..+.+|+.|. .+.+.. .|..++++++|++|++++|. +.++| ..++.+++|++|++++|..
T Consensus 82 s~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999877642 122233333332 222221 23344455555555555554 33343 2455555555555555443
Q ss_pred CCccCccCCCCCCCCEEeccCCCCCccCCCC-ccCCCCCcEEecCCCCCCCCCC----C---------------------
Q 036075 155 LETLPSTIDGLKSLRNLYLSGCSKLKSMPGN-FGKVESLEVLDLSGCKGPPLSS----S--------------------- 208 (474)
Q Consensus 155 l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~l~~~~~~~~~~----~--------------------- 208 (474)
....|..+..+++|++|+++++.. ..+|.. ++.+++|++|++++|....... .
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 333444444444444443333221 111111 1234555555555554332110 0
Q ss_pred --------------------------------------CchhhHHHhh----------------------------hccC
Q 036075 209 --------------------------------------WYLPFLISLM----------------------------RRCS 222 (474)
Q Consensus 209 --------------------------------------~~~~~l~~l~----------------------------~~~~ 222 (474)
..++.+..+. ....
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 0000000000 0000
Q ss_pred CCCccCCCC--CCCCCcccEEEccCCCCCCCCcc---ccccCCCCCCEEeCCCCCCCccc---HhhhcCCCcceeccccc
Q 036075 223 DPMALGFPS--LSGLCSLRKLDLSDSNLGEGAIP---NDIGNLCSLKELYLSKNSFITLP---ASINRLFNLEKLELEDC 294 (474)
Q Consensus 223 ~~~~~~l~~--l~~l~~L~~L~l~~~~l~~~~~~---~~l~~l~~L~~L~L~~~~l~~lp---~~l~~l~~L~~L~l~~c 294 (474)
+. ...+|. +.++++|++|++++|++.+ .+| ..++.+++|++|++++|+++.++ ..+..+++|++|++++|
T Consensus 320 n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 320 SK-VFLVPCSFSQHLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SC-CCCCCHHHHHHCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred Cc-cccCCHHHHhcCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 00 011222 2357888888888888763 232 33667788888888888888765 35778888888888888
Q ss_pred cccccCCC---CCCCcceeeccccccccccc
Q 036075 295 KRLQSMPQ---LPPSIEEVRVNGCASLETLS 322 (474)
Q Consensus 295 ~~l~~l~~---l~~~L~~L~i~~c~~L~~l~ 322 (474)
.++.+|. .+++|+.|+++++. ++.++
T Consensus 398 -~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~ 426 (549)
T 2z81_A 398 -TFHPMPDSCQWPEKMRFLNLSSTG-IRVVK 426 (549)
T ss_dssp -CCCCCCSCCCCCTTCCEEECTTSC-CSCCC
T ss_pred -CCccCChhhcccccccEEECCCCC-ccccc
Confidence 5566664 23677888887775 44443
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4.7e-23 Score=207.98 Aligned_cols=239 Identities=21% Similarity=0.293 Sum_probs=180.6
Q ss_pred cccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccC
Q 036075 27 KIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPF 106 (474)
Q Consensus 27 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~ 106 (474)
....++..+ ..++.+|..+ .++++.|+|++|......+..+.++++|++|+|++|.+..++.
T Consensus 44 ~~~~v~c~~-~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~---------------- 105 (440)
T 3zyj_A 44 QFSKVICVR-KNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI---------------- 105 (440)
T ss_dssp TSCEEECCS-CCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG----------------
T ss_pred CCCEEEeCC-CCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh----------------
Confidence 345666666 5677888644 4788999999987655566788889999999999988876653
Q ss_pred CchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCC-
Q 036075 107 QFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPG- 184 (474)
Q Consensus 107 ~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~- 184 (474)
..+.++++|++|++++|.++.++. .+..+++|++|++++|......+..+..+++|++|++++|..+..++.
T Consensus 106 ------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 106 ------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp ------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred ------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 246778899999999999888865 588899999999998874433444678889999999998887776664
Q ss_pred CccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCC
Q 036075 185 NFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLK 264 (474)
Q Consensus 185 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~ 264 (474)
.+..+++|+.|++++|.... +|.+..+++|+.|++++|++.. ..|..+..+++|+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLRE------------------------IPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQ 234 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSS------------------------CCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCC
T ss_pred hhhcccccCeecCCCCcCcc------------------------ccccCCCcccCEEECCCCccCc-cChhhhccCccCC
Confidence 57888999999999887553 4456778889999999998863 3467788889999
Q ss_pred EEeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCC-C---CCCcceeecccc
Q 036075 265 ELYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQ-L---PPSIEEVRVNGC 315 (474)
Q Consensus 265 ~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~-l---~~~L~~L~i~~c 315 (474)
+|++++|++..+ +..+..+++|++|+|++| .++.++. . .++|+.|++++.
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 999999988865 456788889999999888 4555542 1 135555555554
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.7e-24 Score=206.64 Aligned_cols=207 Identities=30% Similarity=0.450 Sum_probs=171.2
Q ss_pred cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEcc
Q 036075 48 MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLE 127 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~ 127 (474)
..+++.|+++++. +..+|..+.++++|++|++++|.+..+|.. ++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-----------------------~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDT-----------------------MQQFAGLETLTLA 135 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSC-----------------------GGGGTTCSEEEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHH-----------------------HhccCCCCEEECC
Confidence 4778888888865 457787788888888888888888776653 6788889999999
Q ss_pred CcCccccCCcccCCCCCcEEeccCCcCCCccCccCCC---------CCCCCEEeccCCCCCccCCCCccCCCCCcEEecC
Q 036075 128 GTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDG---------LKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLS 198 (474)
Q Consensus 128 ~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~---------L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~ 198 (474)
+|.++.+|..++.+++|++|++++|.....+|..+.. +++|++|++++|.. ..+|..++.+++|++|+++
T Consensus 136 ~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 136 RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp SCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEE
T ss_pred CCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEcc
Confidence 9999888888999999999999998888888877654 89999999999754 4888889999999999999
Q ss_pred CCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC-ccc
Q 036075 199 GCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI-TLP 277 (474)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp 277 (474)
+|..... .+.+..+++|++|++++|++. +.+|..++.+++|++|++++|++. .+|
T Consensus 215 ~N~l~~l-----------------------~~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 215 NSPLSAL-----------------------GPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp SSCCCCC-----------------------CGGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCcC-----------------------chhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 9875531 112677889999999998876 467888899999999999998655 788
Q ss_pred HhhhcCCCcceeccccccccccCCCC
Q 036075 278 ASINRLFNLEKLELEDCKRLQSMPQL 303 (474)
Q Consensus 278 ~~l~~l~~L~~L~l~~c~~l~~l~~l 303 (474)
..+..+++|++|+|++|+.++.+|..
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHH
Confidence 88999999999999999888887753
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=3.7e-24 Score=216.39 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=186.7
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCc-------------cEEEccCCcCCccchh
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESL-------------KILVLSGCRKFKNFRE 67 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L-------------~~L~L~~c~~l~~~~~ 67 (474)
++|++|+++++ .++++|.+++++++|++|++++|...+.+|..++ +.+| ++|++++|. +..+|.
T Consensus 11 ~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred ccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 57899999987 4599999999999999999999887778888776 6664 999999976 555655
Q ss_pred hhcccCccceeeccCCCccccCccccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCc
Q 036075 68 IVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLV 145 (474)
Q Consensus 68 ~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~ 145 (474)
. .++|++|++++|.+..+|.. ..+|+.|. .+.+..++.. .++|++|++++|.++++| .++.+++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCccccc-----cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCC
Confidence 3 36899999999999888753 24555543 3444444321 268999999999999988 599999999
Q ss_pred EEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCC
Q 036075 146 LLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPM 225 (474)
Q Consensus 146 ~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 225 (474)
+|++++|. ++.+|..+ .+|++|++++|.. ..+| .++.+++|+.|++++|.....+... +.+..+.... +..
T Consensus 157 ~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~-n~l 227 (454)
T 1jl5_A 157 IIDVDNNS-LKKLPDLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGN-NIL 227 (454)
T ss_dssp EEECCSSC-CSCCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCS-SCC
T ss_pred EEECCCCc-CcccCCCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcC-CcC
Confidence 99999985 55677643 5899999998754 4466 5888999999999998866544322 2333332222 222
Q ss_pred ccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCCCC
Q 036075 226 ALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLPP 305 (474)
Q Consensus 226 ~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l~~ 305 (474)
. .+|.++.+++|++|++++|++.. +|.. +++|++|++++|.+..+|.. +++|++|++++|. ++.+|.+|+
T Consensus 228 ~-~lp~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~-l~~l~~~~~ 297 (454)
T 1jl5_A 228 E-ELPELQNLPFLTTIYADNNLLKT--LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENI-FSGLSELPP 297 (454)
T ss_dssp S-SCCCCTTCTTCCEEECCSSCCSS--CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSEESCCCT
T ss_pred C-cccccCCCCCCCEEECCCCcCCc--cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCc-cCcccCcCC
Confidence 2 56668888889999999888864 5542 47888888888888877753 3678888888773 666666677
Q ss_pred Ccceeecccc
Q 036075 306 SIEEVRVNGC 315 (474)
Q Consensus 306 ~L~~L~i~~c 315 (474)
+|+.|+++++
T Consensus 298 ~L~~L~l~~N 307 (454)
T 1jl5_A 298 NLYYLNASSN 307 (454)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECcCC
Confidence 7777777765
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=5.3e-23 Score=199.52 Aligned_cols=258 Identities=21% Similarity=0.305 Sum_probs=165.1
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
+++.++++++ .++++|..+. ++|++|++++|. ++.++. .+. +++|++|++++|......|..+.++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666654 4555554432 566666666654 333332 333 666666666666544444666666666666666
Q ss_pred cCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCC--c
Q 036075 81 DGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLE--T 157 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~--~ 157 (474)
++|.+.++|.. + .++|++|++++|.+..++. .++.+++|+.|++++|.... .
T Consensus 108 s~n~l~~l~~~-----------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 108 SKNQLKELPEK-----------------------M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp CSSCCSBCCSS-----------------------C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred CCCcCCccChh-----------------------h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 66666655542 1 1467777777777766543 36667777777777665432 3
Q ss_pred cCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 158 LPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 158 lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
.+..+..+++|++|++++|. +..+|..+. ++|++|++++|.... .....+.++++
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~ 217 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITK----------------------VDAASLKGLNN 217 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCE----------------------ECTGGGTTCTT
T ss_pred ChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCc----------------------cCHHHhcCCCC
Confidence 45556667777777777654 334554432 667777777665432 11123778889
Q ss_pred ccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCC--C--------CCCc
Q 036075 238 LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQ--L--------PPSI 307 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~--l--------~~~L 307 (474)
|+.|++++|.+.+ ..+..+..+++|++|++++|.+..+|.++..+++|++|++++|+ ++.++. + .+++
T Consensus 218 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 218 LAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp CCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCC
T ss_pred CCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccc
Confidence 9999999998864 23446788899999999999999999889999999999999884 555542 1 1456
Q ss_pred ceeeccccc
Q 036075 308 EEVRVNGCA 316 (474)
Q Consensus 308 ~~L~i~~c~ 316 (474)
+.+++.+.+
T Consensus 296 ~~l~l~~N~ 304 (330)
T 1xku_A 296 SGVSLFSNP 304 (330)
T ss_dssp SEEECCSSS
T ss_pred cceEeecCc
Confidence 667776655
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1e-22 Score=216.85 Aligned_cols=336 Identities=21% Similarity=0.163 Sum_probs=169.7
Q ss_pred CCccEEEecCccccccccccccccCc--ccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCcccee
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKK--IILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSEL 78 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~--L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L 78 (474)
++|++|++++|...+..+..+..++. |+.|++++|......|..+. +++|++|++++|......|..+.++++|+.|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 45667777766544444555555544 77777777654444444444 7777777777766555556666666666666
Q ss_pred eccCCCcc------ccCcc--ccccccCCccccc--cCCchhh-HHHHhcCCcccEEEccCcCc--cccCC-cccC--CC
Q 036075 79 LLDGTDIK------ELPKH--KRSKISSNFESFW--PFQFSEF-SEIMTSMEHLLELHLEGTAI--RGLPV-SIEH--LT 142 (474)
Q Consensus 79 ~L~~~~l~------~l~~~--~~~~~~~~L~~l~--~~~~~~l-~~~l~~l~~L~~L~L~~~~i--~~l~~-~i~~--l~ 142 (474)
+++++... .+|.. ..+..+.+|+.+. .+.+..+ +..+.++++|++|++++|.+ ..++. .+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 66654322 12211 1122333344332 2222222 23345555555555555432 22221 1111 13
Q ss_pred CCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCC-CCccCCCCCcEEecCCCCCCCCC--CCCchhhHHHhhh
Q 036075 143 GLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMP-GNFGKVESLEVLDLSGCKGPPLS--SSWYLPFLISLMR 219 (474)
Q Consensus 143 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~l~~l~~ 219 (474)
+|+.|++++|......|..+..+++|+.|++++|.....+| ..+..+++|++|++++|...... ....++.+..+..
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555544333344455555556666665554443333 34455555555555555422111 1112222222211
Q ss_pred ccCCCC-ccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH---------hhhcCCCcce
Q 036075 220 RCSDPM-ALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA---------SINRLFNLEK 288 (474)
Q Consensus 220 ~~~~~~-~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~---------~l~~l~~L~~ 288 (474)
...... ....|. +.++++|+.|++++|++.. ..+..+..+++|++|++++|+++.++. .+..+++|++
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 111111 012232 6677777777777777753 233446677777777777777665421 2566777777
Q ss_pred eccccccccccCCC--C--CCCcceeeccccccccccccccccCccccccccccccccccCC
Q 036075 289 LELEDCKRLQSMPQ--L--PPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGC 346 (474)
Q Consensus 289 L~l~~c~~l~~l~~--l--~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c 346 (474)
|++++| .++.+|. + .++|+.|+++++ .++.++.. .|.++++|+.|.+.++
T Consensus 541 L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~------~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 541 LNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS------VFNNQVSLKSLNLQKN 594 (680)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT------TTTTCTTCCEEECTTS
T ss_pred EECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHh------HhCCCCCCCEEECCCC
Confidence 777776 3445553 1 146666666554 34444322 2455566666666654
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.2e-22 Score=216.23 Aligned_cols=86 Identities=21% Similarity=0.118 Sum_probs=49.0
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++|++|++++|......|..++.+++|++|+|++| .+..+|. .+. +++|++|++++|......+..++++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 56666777666433333455666666666666665 3444444 233 66666666666644333334566666666666
Q ss_pred ccCCCcccc
Q 036075 80 LDGTDIKEL 88 (474)
Q Consensus 80 L~~~~l~~l 88 (474)
+++|.+...
T Consensus 128 Ls~n~l~~~ 136 (680)
T 1ziw_A 128 LSHNGLSST 136 (680)
T ss_dssp CCSSCCSCC
T ss_pred CCCCccccc
Confidence 666665544
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=8.5e-23 Score=198.25 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=193.5
Q ss_pred CCccEEEecCccccccc-cccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREI-HPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~-~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++|++|++++|. +..+ +..+..+++|++|++++|......|..+. +++|++|++++|. +..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEE
Confidence 689999999985 5555 45899999999999999865544466666 9999999999975 456666554 7999999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccc---cCCcccCCCCCcEEeccCCcCCC
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRG---LPVSIEHLTGLVLLNLRDCKNLE 156 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~---l~~~i~~l~~L~~L~L~~c~~l~ 156 (474)
+++|.+..++.. .+.++++|++|++++|.++. .+..+..+ +|++|++++|. ++
T Consensus 130 l~~n~i~~~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~ 185 (332)
T 2ft3_A 130 IHDNRIRKVPKG----------------------VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LT 185 (332)
T ss_dssp CCSSCCCCCCSG----------------------GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CS
T ss_pred CCCCccCccCHh----------------------HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CC
Confidence 999999877652 46788999999999998874 45667777 99999999986 56
Q ss_pred ccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCC
Q 036075 157 TLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLC 236 (474)
Q Consensus 157 ~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~ 236 (474)
.+|..+. ++|++|++++|......+..+..+++|+.|++++|...... ...+..++
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~ 241 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE----------------------NGSLSFLP 241 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----------------------TTGGGGCT
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----------------------hhHhhCCC
Confidence 6777654 78999999998766666678899999999999998765311 11267788
Q ss_pred cccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-hhhc------CCCcceeccccccc
Q 036075 237 SLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA-SINR------LFNLEKLELEDCKR 296 (474)
Q Consensus 237 ~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~------l~~L~~L~l~~c~~ 296 (474)
+|++|++++|++. .+|..+..+++|++|++++|.++.++. .+.. .+.|+.|++.+++.
T Consensus 242 ~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 242 TLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 9999999999996 488889999999999999999987764 2322 46789999999864
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=205.94 Aligned_cols=265 Identities=18% Similarity=0.190 Sum_probs=199.2
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccchhhhcccCccceeec
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLL 80 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L 80 (474)
.....+.++ ..++++|..+. ++|++|++++|. ++.+|. .+. +++|++|++++|......+..+.++++|++|++
T Consensus 32 ~~~~c~~~~-~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 32 RNGICKGSS-GSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTSEEECCS-TTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCeEeeCCC-CCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 334455555 36677776554 589999999865 555554 444 899999999988655555677888899999999
Q ss_pred cCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC--cccCCCCCcEEeccCCcCCCcc
Q 036075 81 DGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV--SIEHLTGLVLLNLRDCKNLETL 158 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~--~i~~l~~L~~L~L~~c~~l~~l 158 (474)
++|.+..++. ..++++++|++|++++|.++.+|. .++.+++|++|++++|..+..+
T Consensus 108 s~n~l~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 108 SYNYLSNLSS----------------------SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp CSSCCSSCCH----------------------HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CCCcCCcCCH----------------------hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 9988876653 357889999999999999999887 6899999999999999766665
Q ss_pred -CccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 159 -PSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 159 -p~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
+..+..+++|++|++++|......|..++.+++|++|++++|..... +.. .+..+++
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------~~~----------------~~~~~~~ 223 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL------LEI----------------FVDVTSS 223 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH------HHH----------------HHHHTTT
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc------hhh----------------hhhhccc
Confidence 46788999999999999887777788899999999999999875321 100 0334688
Q ss_pred ccEEEccCCCCCCCCccc--cccCCCCCCEEeCCCCCCC-----cccHhhhcCCCcceeccccccccccCCCC----CCC
Q 036075 238 LRKLDLSDSNLGEGAIPN--DIGNLCSLKELYLSKNSFI-----TLPASINRLFNLEKLELEDCKRLQSMPQL----PPS 306 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~--~l~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~l~~c~~l~~l~~l----~~~ 306 (474)
|+.|++++|.+....... .....+.++.++++++.+. .+|..+..+++|++|++++| .++.+|.- .++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTS 302 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCC
Confidence 999999999886422111 1234667888888888766 47888899999999999998 45666641 257
Q ss_pred cceeeccccc
Q 036075 307 IEEVRVNGCA 316 (474)
Q Consensus 307 L~~L~i~~c~ 316 (474)
|+.|++++++
T Consensus 303 L~~L~L~~N~ 312 (353)
T 2z80_A 303 LQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 7777777764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.9e-22 Score=194.35 Aligned_cols=242 Identities=21% Similarity=0.289 Sum_probs=189.2
Q ss_pred CCccEEEecCccccccccc-cccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHP-TLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~-~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++|++|++++| .++.++. .++.+++|++|++++|......|..+. +++|++|++++|. +..+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEE
Confidence 68999999998 4555654 789999999999999865555577776 9999999999986 456666554 7899999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccc---cCCcccCCCCCcEEeccCCcCCC
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRG---LPVSIEHLTGLVLLNLRDCKNLE 156 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~---l~~~i~~l~~L~~L~L~~c~~l~ 156 (474)
+++|.+..++. ..+.++++|++|++++|.+.. .+..++.+++|++|++++|. ++
T Consensus 128 l~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 184 (330)
T 1xku_A 128 VHENEITKVRK----------------------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-IT 184 (330)
T ss_dssp CCSSCCCBBCH----------------------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CC
T ss_pred CCCCcccccCH----------------------hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cc
Confidence 99999887653 457888999999999988863 45678888999999998876 55
Q ss_pred ccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCC
Q 036075 157 TLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLC 236 (474)
Q Consensus 157 ~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~ 236 (474)
.+|..+. ++|++|++++|......+..+..+++|+.|++++|...... ...+..++
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------~~~~~~l~ 240 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----------------------NGSLANTP 240 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC----------------------TTTGGGST
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC----------------------hhhccCCC
Confidence 6776554 78999999988766666777888899999999988754311 11366778
Q ss_pred cccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHh-hh------cCCCcceeccccccc
Q 036075 237 SLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPAS-IN------RLFNLEKLELEDCKR 296 (474)
Q Consensus 237 ~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~-l~------~l~~L~~L~l~~c~~ 296 (474)
+|++|++++|.+. .+|..+..+++|++|++++|+++.++.. +. ..+.|+.|++.+++.
T Consensus 241 ~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 241 HLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 8999999999886 4788888889999999999988877642 22 246788888888763
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8.9e-23 Score=213.87 Aligned_cols=276 Identities=14% Similarity=0.139 Sum_probs=208.7
Q ss_pred CCCccEEEecCcccccccc-ccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccch-hhhcccCccce
Q 036075 1 MPNFEELDLGGCTRLREIH-PTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFR-EIVGSRKCLSE 77 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~ 77 (474)
+++|++|+|++|. +..++ ..++.+++|++|+|++|......|..++ +++|++|+|++|... .+| ..++++++|++
T Consensus 74 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence 5799999999985 55554 5899999999999999875444445555 999999999998654 555 45799999999
Q ss_pred eeccCCCccccCccccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCC
Q 036075 78 LLLDGTDIKELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNL 155 (474)
Q Consensus 78 L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l 155 (474)
|++++|.+..++.. .+..+.+|+.|. .+.+..++ +..+++|+.|++++|.+..++ ...+|+.|++++|. +
T Consensus 152 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~-l 223 (597)
T 3oja_B 152 LSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNS-I 223 (597)
T ss_dssp EECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSC-C
T ss_pred EEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccccc----CCchhheeeccCCc-c
Confidence 99999999877643 223344455443 33344443 455677777777777666532 34567888888765 4
Q ss_pred CccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCC-CCCC
Q 036075 156 ETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP-SLSG 234 (474)
Q Consensus 156 ~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~ 234 (474)
..++..+ .++|+.|++++|.... +..++.+++|+.|++++|.... ..| .+++
T Consensus 224 ~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~ 276 (597)
T 3oja_B 224 NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-----------------------IMYHPFVK 276 (597)
T ss_dssp CEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-----------------------EESGGGTT
T ss_pred ccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-----------------------CCHHHhcC
Confidence 4444433 3689999999986544 3568899999999999987543 122 3788
Q ss_pred CCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCC-CCCCCcceeecc
Q 036075 235 LCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMP-QLPPSIEEVRVN 313 (474)
Q Consensus 235 l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~-~l~~~L~~L~i~ 313 (474)
+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+..+|..+..+++|+.|++++|. +..++ ...++|+.|+++
T Consensus 277 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 277 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLS 353 (597)
T ss_dssp CSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECC
T ss_pred ccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEee
Confidence 9999999999999965 7888888999999999999999999999999999999999996 44443 344689999998
Q ss_pred ccc
Q 036075 314 GCA 316 (474)
Q Consensus 314 ~c~ 316 (474)
+++
T Consensus 354 ~N~ 356 (597)
T 3oja_B 354 HND 356 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.3e-21 Score=202.22 Aligned_cols=256 Identities=27% Similarity=0.333 Sum_probs=199.7
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccC
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDG 82 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~ 82 (474)
+++.|+++++ .++.+|..+. ++|++|++++| .++.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 5788999886 6778887665 78999999997 4667776 57899999999976 556665 678899999999
Q ss_pred CCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccC
Q 036075 83 TDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTI 162 (474)
Q Consensus 83 ~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l 162 (474)
|.+..+|. .+++|+.|++++|.++.+|.. +++|++|++++|. ++.+|..
T Consensus 111 N~l~~l~~--------------------------~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~- 159 (622)
T 3g06_A 111 NPLTHLPA--------------------------LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL- 159 (622)
T ss_dssp CCCCCCCC--------------------------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC-
T ss_pred CcCCCCCC--------------------------CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc-
Confidence 98887664 357889999999999988874 4889999999885 5566653
Q ss_pred CCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEE
Q 036075 163 DGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLD 242 (474)
Q Consensus 163 ~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~ 242 (474)
+++|+.|++++|. +..+| ..+++|+.|++++|.... +|. ..++|+.|+
T Consensus 160 --~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~------------------------l~~--~~~~L~~L~ 207 (622)
T 3g06_A 160 --PSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLAS------------------------LPT--LPSELYKLW 207 (622)
T ss_dssp --CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC------------------------CCC--CCTTCCEEE
T ss_pred --cCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCC------------------------CCC--ccchhhEEE
Confidence 4678999999864 44566 457889999999987543 221 246889999
Q ss_pred ccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCCCCCcceeeccccccccccc
Q 036075 243 LSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLPPSIEEVRVNGCASLETLS 322 (474)
Q Consensus 243 l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~ 322 (474)
+++|.+.. +|. .+++|++|++++|.++.+| ..+++|+.|++++| .++.+|..+++|+.|++++| .++.++
T Consensus 208 L~~N~l~~--l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 208 AYNNRLTS--LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CCSSCCSS--CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCC
T ss_pred CcCCcccc--cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCC
Confidence 99998864 554 3578999999999999888 56789999999998 67788888889999999998 466654
Q ss_pred cccccCccccccccccccccccCCCc
Q 036075 323 GALKLCNSEYISINCIDDLKLLGCNG 348 (474)
Q Consensus 323 ~~~~l~~l~~~~c~~L~~l~~~~c~~ 348 (474)
. .+.++++|+.|.+.++..
T Consensus 278 ~-------~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 278 E-------SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp G-------GGGGSCTTCEEECCSCCC
T ss_pred H-------HHhhccccCEEEecCCCC
Confidence 2 256778888888887543
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=7.3e-22 Score=199.26 Aligned_cols=242 Identities=27% Similarity=0.356 Sum_probs=198.8
Q ss_pred ccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccC
Q 036075 4 FEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDG 82 (474)
Q Consensus 4 L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~ 82 (474)
.+.++..+ ..++++|..+. ++++.|+|++|......+..+. +++|++|+|++|......+..+.++++|++|+|++
T Consensus 45 ~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCS-CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCC-CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34555555 46778887654 7899999999764444445555 99999999999876655667899999999999999
Q ss_pred CCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccCc-
Q 036075 83 TDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPS- 160 (474)
Q Consensus 83 ~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~- 160 (474)
|.+..++.. .+..+++|++|++++|.++.++. .+..+++|++|++++|..+..++.
T Consensus 122 n~l~~~~~~----------------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 122 NRLTTIPNG----------------------AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp SCCSSCCTT----------------------TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CcCCeeCHh----------------------HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 999887752 46788999999999999999865 689999999999999888888776
Q ss_pred cCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccE
Q 036075 161 TIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRK 240 (474)
Q Consensus 161 ~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~ 240 (474)
.+.++++|++|++++|. +..+| .+..+++|+.|++++|..... ....+.++++|+.
T Consensus 180 ~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSAI----------------------RPGSFQGLMHLQK 235 (440)
T ss_dssp TTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSCCCEE----------------------CTTTTTTCTTCCE
T ss_pred hhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCccCcc----------------------ChhhhccCccCCE
Confidence 57889999999999975 45666 478999999999999975431 1123788999999
Q ss_pred EEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-hhhcCCCcceecccccc
Q 036075 241 LDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA-SINRLFNLEKLELEDCK 295 (474)
Q Consensus 241 L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 295 (474)
|++++|++.. ..+..+..+++|++|+|++|+++.+|. .+..+++|+.|++++++
T Consensus 236 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCCCCE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCceeE-EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999964 346678899999999999999998875 56889999999999885
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.9e-22 Score=192.15 Aligned_cols=233 Identities=23% Similarity=0.245 Sum_probs=119.0
Q ss_pred CcccCCccccCCccEEEccCCcCCccchh-hhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhc
Q 036075 39 LTTLPDKICMESLKILVLSGCRKFKNFRE-IVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTS 117 (474)
Q Consensus 39 l~~lp~~~~l~~L~~L~L~~c~~l~~~~~-~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~ 117 (474)
++.+|..+ .++|++|++++|.. ..+|. .+.++++|++|++++|.+..+. ..+..+..
T Consensus 19 l~~ip~~~-~~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------------~~~~~~~~ 76 (306)
T 2z66_A 19 LTSVPTGI-PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKG--------------------CCSQSDFG 76 (306)
T ss_dssp CSSCCSCC-CTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEE--------------------EEEHHHHS
T ss_pred cccCCCCC-CCCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCccc--------------------Cccccccc
Confidence 44444322 24555555555432 23332 3455555555555555544221 01123344
Q ss_pred CCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccC-ccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEe
Q 036075 118 MEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLP-STIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLD 196 (474)
Q Consensus 118 l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~ 196 (474)
+++|++|++++|.+..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+..++.+++|++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 555555555555555555555555566666655554222211 2455555666666665554444455555556666666
Q ss_pred cCCCCCCCCCCCCchhhHHHhhhccCCCCccCCC-CCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc
Q 036075 197 LSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP-SLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 197 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
+++|.... ...| .+..+++|++|++++|++.+ ..|..+..+++|++|++++|.++.
T Consensus 157 l~~n~l~~----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 157 MAGNSFQE----------------------NFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp CTTCEEGG----------------------GEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCcccc----------------------ccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCc
Confidence 65554221 0011 14555666666666666542 224555666666666666666665
Q ss_pred ccH-hhhcCCCcceeccccccccccCC----CCCCCcceeeccccc
Q 036075 276 LPA-SINRLFNLEKLELEDCKRLQSMP----QLPPSIEEVRVNGCA 316 (474)
Q Consensus 276 lp~-~l~~l~~L~~L~l~~c~~l~~l~----~l~~~L~~L~i~~c~ 316 (474)
++. .+..+++|++|++++|+.....+ .+|++|+.|++++++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 543 45666666666666664333222 234466666666654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=5.4e-22 Score=200.94 Aligned_cols=239 Identities=22% Similarity=0.275 Sum_probs=161.0
Q ss_pred ccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCC
Q 036075 28 IILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQ 107 (474)
Q Consensus 28 L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~ 107 (474)
...++..+ ..++.+|..+ .++|++|+|++|......+..+.++++|++|+|++|.+..++.
T Consensus 56 ~~~v~c~~-~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----------------- 116 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV----------------- 116 (452)
T ss_dssp SCEEECCS-SCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----------------
T ss_pred CcEEEECC-CCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-----------------
Confidence 34555555 4566677533 4677888888876555556677778888888888877776543
Q ss_pred chhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCC-C
Q 036075 108 FSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPG-N 185 (474)
Q Consensus 108 ~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~-~ 185 (474)
..+.++++|++|++++|.++.+|.. ++.+++|++|++++|......+..+..+++|++|++++|..+..++. .
T Consensus 117 -----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 117 -----GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp -----TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred -----hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 2356677788888888877776553 77777888888877764333334567777888888887777766654 4
Q ss_pred ccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCE
Q 036075 186 FGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKE 265 (474)
Q Consensus 186 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~ 265 (474)
+..+++|+.|++++|.... +|.+..+++|+.|++++|.+.. ..|..+..+++|++
T Consensus 192 ~~~l~~L~~L~L~~n~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKD------------------------MPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKK 246 (452)
T ss_dssp TTTCTTCCEEECTTSCCSS------------------------CCCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCE
T ss_pred ccCCCCCCEEECCCCcccc------------------------cccccccccccEEECcCCcCcc-cCcccccCccCCCE
Confidence 6777788888887776543 3345667777777777777753 34566777777888
Q ss_pred EeCCCCCCCcc-cHhhhcCCCcceeccccccccccCCC-C---CCCcceeeccccc
Q 036075 266 LYLSKNSFITL-PASINRLFNLEKLELEDCKRLQSMPQ-L---PPSIEEVRVNGCA 316 (474)
Q Consensus 266 L~L~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~-l---~~~L~~L~i~~c~ 316 (474)
|++++|++..+ +..+..+++|+.|++++| .++.++. . .++|+.|++++.+
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 88877777754 456777777788887777 4455542 1 2456666666653
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=5e-22 Score=200.81 Aligned_cols=269 Identities=23% Similarity=0.294 Sum_probs=171.5
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
++|++|++++| .+..++.. .++|++|++++|. ++.+|....+++|++|++++|. +..+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECc
Confidence 34555555554 33333321 1578888888864 4557753338888888888875 44455433 478888888
Q ss_pred CCCccccCccccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccC
Q 036075 82 GTDIKELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLP 159 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp 159 (474)
+|.+..+|. +..+..|+.|. .+.+..+|.. .++|++|++++|.++++|. ++.+++|++|++++|. ++.+|
T Consensus 182 ~n~l~~l~~---~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~ 253 (454)
T 1jl5_A 182 NNQLEELPE---LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLP 253 (454)
T ss_dssp SSCCSSCCC---CTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCC
T ss_pred CCcCCcCcc---ccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCccc
Confidence 888887763 44455555543 3444444432 2578888888888888884 8888888888888875 45566
Q ss_pred ccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCC-Ccc
Q 036075 160 STIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGL-CSL 238 (474)
Q Consensus 160 ~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l-~~L 238 (474)
.. +++|+.|++++|.. ..+|.. +++|+.|++++|.....+... +.+..+....+. +..+..+ ++|
T Consensus 254 ~~---~~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~l~~l~~~~--~~L~~L~l~~N~-----l~~i~~~~~~L 319 (454)
T 1jl5_A 254 DL---PPSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENIFSGLSELP--PNLYYLNASSNE-----IRSLCDLPPSL 319 (454)
T ss_dssp SC---CTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSEESCCC--TTCCEEECCSSC-----CSEECCCCTTC
T ss_pred cc---ccccCEEECCCCcc-cccCcc---cCcCCEEECcCCccCcccCcC--CcCCEEECcCCc-----CCcccCCcCcC
Confidence 53 37888888888653 445543 367888888888755432211 222222111111 1112233 478
Q ss_pred cEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCCCCCccee
Q 036075 239 RKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLPPSIEEV 310 (474)
Q Consensus 239 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l~~~L~~L 310 (474)
+.|++++|++.. +|.. +++|++|++++|.++.+|. .+++|++|++++| .++.+|.+|.++..|
T Consensus 320 ~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 320 EELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVEDL 382 (454)
T ss_dssp CEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCEE
T ss_pred CEEECCCCcccc--cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCC-CCCcCCCChHHHHhh
Confidence 999999988864 6543 5789999999998888887 5788999999887 455555555444333
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=4e-22 Score=191.19 Aligned_cols=241 Identities=22% Similarity=0.253 Sum_probs=196.7
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccCCc-cc-cCCccEEEccCCcCCc--cchhhhcccCccceeec
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDK-IC-MESLKILVLSGCRKFK--NFREIVGSRKCLSELLL 80 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~--~~~~~~~~l~~L~~L~L 80 (474)
+.++.++. .++.+|..+. ++|++|++++|. ++.+|.. +. +++|++|++++|.... ..+..+..+++|++|++
T Consensus 10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCC-CcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45677663 6778887543 799999999975 5677764 34 9999999999986542 23667778999999999
Q ss_pred cCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC--cccCCCCCcEEeccCCcCCCcc
Q 036075 81 DGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV--SIEHLTGLVLLNLRDCKNLETL 158 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~--~i~~l~~L~~L~L~~c~~l~~l 158 (474)
++|.+..++.. +..+++|++|++++|.+++++. .+..+++|++|++++|......
T Consensus 86 s~n~i~~l~~~-----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 86 SFNGVITMSSN-----------------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSCSEEEEEEE-----------------------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCCccccChhh-----------------------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 99998876643 6778999999999999998864 7899999999999999876677
Q ss_pred CccCCCCCCCCEEeccCCCCCc-cCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 159 PSTIDGLKSLRNLYLSGCSKLK-SMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 159 p~~l~~L~~L~~L~l~~c~~l~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
+..+..+++|++|++++|.... ..|..++.+++|++|++++|..... ....+..+++
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l~~ 200 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----------------------SPTAFNSLSS 200 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE----------------------CTTTTTTCTT
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc----------------------CHHHhcCCCC
Confidence 7888999999999999987655 5788899999999999999975431 1123778899
Q ss_pred ccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc-ccHhhhcCC-Ccceecccccc
Q 036075 238 LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT-LPASINRLF-NLEKLELEDCK 295 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~-lp~~l~~l~-~L~~L~l~~c~ 295 (474)
|+.|++++|.+.. ..+..+..+++|++|++++|.+.. .|..+..++ +|++|++++++
T Consensus 201 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 201 LQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 9999999999864 234468889999999999999985 456778884 99999999985
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-23 Score=203.05 Aligned_cols=216 Identities=17% Similarity=0.120 Sum_probs=122.7
Q ss_pred cccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcc
Q 036075 23 LLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFE 101 (474)
Q Consensus 23 ~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~ 101 (474)
..+++|++|+|++|......|..+. +++|++|++++|......+ +..+++|++|++++|.+..++.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----------- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----------- 97 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----------
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----------
Confidence 4556788888887644333334444 7788888888775433333 6777788888888877765542
Q ss_pred ccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCcc
Q 036075 102 SFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKS 181 (474)
Q Consensus 102 ~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~ 181 (474)
.++|++|++++|.+.+++.. .+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus 98 ----------------~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 98 ----------------GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp ----------------CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred ----------------CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 24566666666666554432 245566666666554333344455556666666666544433
Q ss_pred CCCCc-cCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCC
Q 036075 182 MPGNF-GKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNL 260 (474)
Q Consensus 182 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l 260 (474)
.+..+ ..+++|++|++++|.... ++....+++|++|++++|++.. +|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l 213 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSA 213 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGG
T ss_pred cHHHHhhccCcCCEEECCCCcCcc------------------------cccccccccCCEEECCCCcCCc--chhhhccc
Confidence 33333 345566666666655432 1112234556666666665542 44445555
Q ss_pred CCCCEEeCCCCCCCcccHhhhcCCCcceecccccc
Q 036075 261 CSLKELYLSKNSFITLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 261 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 295 (474)
++|++|++++|+++.+|..+..+++|+.|++++|+
T Consensus 214 ~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 66666666666666555555555666666666554
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3.1e-21 Score=195.33 Aligned_cols=241 Identities=26% Similarity=0.328 Sum_probs=191.2
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCC
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGT 83 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~ 83 (474)
..++..+ ..++.+|..+. +++++|+|++|......|..+. +++|++|+|++|......+..+.++++|++|+|++|
T Consensus 57 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECC-CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4555554 36667776554 6899999999765444455566 999999999998766556678899999999999999
Q ss_pred CccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccCc-c
Q 036075 84 DIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPS-T 161 (474)
Q Consensus 84 ~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~-~ 161 (474)
.+..++.. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++. .
T Consensus 134 ~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 134 WLTVIPSG----------------------AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp CCSBCCTT----------------------TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred cCCccChh----------------------hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 98877653 46778999999999999998865 688999999999999888888776 4
Q ss_pred CCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEE
Q 036075 162 IDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKL 241 (474)
Q Consensus 162 l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L 241 (474)
+..+++|++|++++|.. ..+| .+..+++|+.|++++|..... ....+.++++|+.|
T Consensus 192 ~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L 247 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPEI----------------------RPGSFHGLSSLKKL 247 (452)
T ss_dssp TTTCTTCCEEECTTSCC-SSCC-CCTTCTTCCEEECTTSCCSEE----------------------CGGGGTTCTTCCEE
T ss_pred ccCCCCCCEEECCCCcc-cccc-cccccccccEEECcCCcCccc----------------------CcccccCccCCCEE
Confidence 78899999999999754 4555 478899999999999875431 01127788999999
Q ss_pred EccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-hhhcCCCcceecccccc
Q 036075 242 DLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA-SINRLFNLEKLELEDCK 295 (474)
Q Consensus 242 ~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 295 (474)
++++|++.. ..+..+..+++|++|+|++|+++.+|. .+..+++|+.|++++++
T Consensus 248 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 248 WVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 999998863 346678889999999999999998775 46789999999999885
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=4.1e-23 Score=199.16 Aligned_cols=241 Identities=19% Similarity=0.148 Sum_probs=194.4
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
++|++|+|++|......+..+..+++|++|+|++|.. ...+....+++|++|++++|. +..++ ..++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEEETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-CcchhhhhcCCCCEEECcCCc-ccccc----CCCCcCEEECC
Confidence 6899999999854444446889999999999999764 444443449999999999986 34333 44899999999
Q ss_pred CCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccC-CcccCCCCCcEEeccCCcCCCccCc
Q 036075 82 GTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLETLPS 160 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~c~~l~~lp~ 160 (474)
+|.+..++.. .+++|++|++++|.++.++ ..++.+++|++|++++|......+.
T Consensus 108 ~n~l~~~~~~-------------------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 108 NNNISRVSCS-------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSCCSEEEEC-------------------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCccCCcCcc-------------------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 9999876542 3678999999999999875 4788999999999999876555555
Q ss_pred cC-CCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCccc
Q 036075 161 TI-DGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLR 239 (474)
Q Consensus 161 ~l-~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~ 239 (474)
.+ ..+++|++|++++|... .++. ...+++|++|++++|..... .+.+..+++|+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~~l-----------------------~~~~~~l~~L~ 217 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAFM-----------------------GPEFQSAAGVT 217 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCCEE-----------------------CGGGGGGTTCS
T ss_pred HHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCCcc-----------------------hhhhcccCccc
Confidence 55 47899999999997644 4443 34589999999999986531 12266788999
Q ss_pred EEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC--cccHhhhcCCCcceeccccccccccC
Q 036075 240 KLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI--TLPASINRLFNLEKLELEDCKRLQSM 300 (474)
Q Consensus 240 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l 300 (474)
.|++++|.+.. +|..+..+++|+.|++++|.+. .+|.++..+++|+.|++.+++.++..
T Consensus 218 ~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 218 WISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 99999999974 8888999999999999999998 78889999999999999988777653
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.5e-21 Score=205.77 Aligned_cols=129 Identities=18% Similarity=0.296 Sum_probs=101.4
Q ss_pred CCccEEEecCcccccccc-ccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccch-hhhcccCccce
Q 036075 2 PNFEELDLGGCTRLREIH-PTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFR-EIVGSRKCLSE 77 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~ 77 (474)
+++++|+|+++ .++.++ .++..+++|++|+|++|. ++.+|. .+. +++|++|+|++|. ++.+| ..|.++++|++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 37899999997 677776 578999999999999974 566654 455 9999999999986 45554 67899999999
Q ss_pred eeccCCCccccCccccccccCCccccc--cCCch--hhHHHHhcCCcccEEEccCcCcccc
Q 036075 78 LLLDGTDIKELPKHKRSKISSNFESFW--PFQFS--EFSEIMTSMEHLLELHLEGTAIRGL 134 (474)
Q Consensus 78 L~L~~~~l~~l~~~~~~~~~~~L~~l~--~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~l 134 (474)
|++++|.+..++.. .+..+.+|+.|. .+.+. ..|..++.+++|++|++++|.++++
T Consensus 129 L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 129 LVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp EECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred EECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999999988764 245566677665 34444 3567888999999999999988765
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=9.3e-24 Score=203.19 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=73.7
Q ss_pred cccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCC-ccchhhhc-------ccCccceeeccCCCcc-ccCcccc
Q 036075 23 LLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKF-KNFREIVG-------SRKCLSELLLDGTDIK-ELPKHKR 93 (474)
Q Consensus 23 ~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l-~~~~~~~~-------~l~~L~~L~L~~~~l~-~l~~~~~ 93 (474)
+..++|+.|++++|.. .+|..+. ..|++|+++++... ..++..+. ++++|++|++++|.+. .+|....
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc--ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3455566666666544 4554332 11566666665431 12333333 4566666666666665 2333200
Q ss_pred ccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCC-----CCCcEEeccCCcCCCccCccCCCCCCC
Q 036075 94 SKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHL-----TGLVLLNLRDCKNLETLPSTIDGLKSL 168 (474)
Q Consensus 94 ~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l-----~~L~~L~L~~c~~l~~lp~~l~~L~~L 168 (474)
+..+++|++|++++|.++++|..++.+ ++|++|++++|......|..+..+++|
T Consensus 117 ---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 117 ---------------------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp ---------------------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ---------------------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 134455555555555555444444443 455555555554333333445555555
Q ss_pred CEEeccCCCCCcc--CCCCc--cCCCCCcEEecCCCC
Q 036075 169 RNLYLSGCSKLKS--MPGNF--GKVESLEVLDLSGCK 201 (474)
Q Consensus 169 ~~L~l~~c~~l~~--~~~~l--~~l~~L~~L~l~~~~ 201 (474)
++|++++|...+. ++..+ +.+++|++|++++|.
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 5555555443322 11111 444555555555554
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=6.8e-21 Score=180.68 Aligned_cols=220 Identities=25% Similarity=0.328 Sum_probs=154.5
Q ss_pred cEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCc
Q 036075 29 ILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQF 108 (474)
Q Consensus 29 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~ 108 (474)
+.++.++ ..++.+|..+ .++|++|+++++......+..+.++++|++|++++|.+..++.
T Consensus 14 ~~~~c~~-~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------ 73 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA------------------ 73 (285)
T ss_dssp CEEECCS-SCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------------------
T ss_pred eEEEcCc-CCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH------------------
Confidence 4556555 4556666432 5677888888766544444567777888888888777765532
Q ss_pred hhhHHHHhcCCcccEEEccCcC-cccc-CCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCc
Q 036075 109 SEFSEIMTSMEHLLELHLEGTA-IRGL-PVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNF 186 (474)
Q Consensus 109 ~~l~~~l~~l~~L~~L~L~~~~-i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l 186 (474)
..+.++++|++|++++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..+
T Consensus 74 ----~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 74 ----AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp ----TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ----hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 235667778888888876 7776 5567778888888888876555556667778888888888866544444557
Q ss_pred cCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEE
Q 036075 187 GKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKEL 266 (474)
Q Consensus 187 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L 266 (474)
+.+++|++|++++|.....+ ...+.++++|+.|++++|.+.. ..|..+..+++|++|
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVP----------------------ERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTL 206 (285)
T ss_dssp TTCTTCCEEECCSSCCCEEC----------------------TTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred ccCCCccEEECCCCcccccC----------------------HHHhcCccccCEEECCCCcccc-cCHhHccCcccccEe
Confidence 77888888888887644211 1126677888888888888763 346778888888888
Q ss_pred eCCCCCCCcccH-hhhcCCCcceecccccc
Q 036075 267 YLSKNSFITLPA-SINRLFNLEKLELEDCK 295 (474)
Q Consensus 267 ~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 295 (474)
++++|+++.++. .+..+++|++|++++++
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 888888887764 57888888888888875
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=3.7e-21 Score=182.54 Aligned_cols=221 Identities=19% Similarity=0.203 Sum_probs=176.0
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccC-Cccc-cCCccEEEccCCcCCccchhhhcccCccceeeccC
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLP-DKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDG 82 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~ 82 (474)
+.++.++ ..++.+|..+ .++|++|+++++. ++.++ ..+. +++|++|++++|......+..+.++++|++|++++
T Consensus 14 ~~~~c~~-~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4566666 4677787644 5799999999975 44454 4455 99999999999876555678899999999999999
Q ss_pred CC-ccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCc
Q 036075 83 TD-IKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPS 160 (474)
Q Consensus 83 ~~-l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~ 160 (474)
|. +..++. ..+..+++|++|++++|.+.++ +..++.+++|++|++++|......+.
T Consensus 90 n~~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 90 NAQLRSVDP----------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp CTTCCCCCT----------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccCH----------------------HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 97 776643 2467889999999999999987 56789999999999999875544445
Q ss_pred cCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccE
Q 036075 161 TIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRK 240 (474)
Q Consensus 161 ~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~ 240 (474)
.+..+++|++|++++|......+..+..+++|+.|++++|..... ....+.++++|+.
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV----------------------HPHAFRDLGRLMT 205 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCE
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc----------------------CHhHccCcccccE
Confidence 588999999999999865544445688999999999999975431 1123778899999
Q ss_pred EEccCCCCCCCCccccccCCCCCCEEeCCCCCCC
Q 036075 241 LDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 241 L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~ 274 (474)
|++++|++.+ ..+..+..+++|++|++++|.+.
T Consensus 206 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 206 LYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred eeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 9999999974 33356889999999999999876
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.1e-21 Score=198.05 Aligned_cols=214 Identities=17% Similarity=0.127 Sum_probs=135.6
Q ss_pred cCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcccc
Q 036075 25 HKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESF 103 (474)
Q Consensus 25 l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l 103 (474)
+++|++|+|++|......|..+. +++|++|+|++|......| +..+++|++|++++|.+..++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------------- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------------- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-------------
Confidence 44788888888654443344555 7888888888876444333 7777888888888887776543
Q ss_pred ccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCC
Q 036075 104 WPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMP 183 (474)
Q Consensus 104 ~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~ 183 (474)
.++|++|++++|.+..++.. .+++|+.|++++|......|..+..+++|+.|++++|......|
T Consensus 98 --------------~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 98 --------------GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp --------------CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred --------------CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 25666777777766665432 35667777777666544445556666777777777665555445
Q ss_pred CCcc-CCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCC
Q 036075 184 GNFG-KVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCS 262 (474)
Q Consensus 184 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~ 262 (474)
..+. .+++|+.|++++|.... ++....+++|+.|++++|.++. +|..+..+++
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~ 215 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAG 215 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCCE--ECGGGGGGTT
T ss_pred HHHhhhCCcccEEecCCCcccc------------------------ccccccCCCCCEEECCCCCCCC--CCHhHcCCCC
Confidence 4443 56667777777665432 1223345666667776666653 5555666666
Q ss_pred CCEEeCCCCCCCcccHhhhcCCCcceecccccc
Q 036075 263 LKELYLSKNSFITLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 263 L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 295 (474)
|+.|++++|.+..+|..+..+++|+.|++++|+
T Consensus 216 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred ccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 777777776666666666666666666666664
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.7e-22 Score=200.89 Aligned_cols=238 Identities=19% Similarity=0.156 Sum_probs=193.3
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
++|++|+|++|......|..++.+++|++|+|++|.... .+....+++|++|+|++|. +..++ ..++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEECTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-CcccccCCCCCEEEecCCc-CCCCC----CCCCcCEEECc
Confidence 589999999985444445789999999999999986443 3333349999999999985 44443 34899999999
Q ss_pred CCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCc
Q 036075 82 GTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPS 160 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~ 160 (474)
+|.+..++. ..+++|+.|++++|.+..+ |..++.+++|++|++++|......|.
T Consensus 108 ~N~l~~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 108 NNNISRVSC-------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp SSCCCCEEE-------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCcCCCCCc-------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 999987653 2357899999999999986 55789999999999999986666777
Q ss_pred cCC-CCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCccc
Q 036075 161 TID-GLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLR 239 (474)
Q Consensus 161 ~l~-~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~ 239 (474)
.+. .+++|+.|++++|.... ++. ...+++|+.|++++|..... .+.+..+++|+
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~l~~L~ 217 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFM-----------------------GPEFQSAAGVT 217 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEE-----------------------CGGGGGGTTCS
T ss_pred HHhhhCCcccEEecCCCcccc-ccc-cccCCCCCEEECCCCCCCCC-----------------------CHhHcCCCCcc
Confidence 765 79999999999987544 343 34699999999999976531 22367789999
Q ss_pred EEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC--cccHhhhcCCCcceecccccccc
Q 036075 240 KLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI--TLPASINRLFNLEKLELEDCKRL 297 (474)
Q Consensus 240 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~c~~l 297 (474)
.|++++|.+.. +|..+..+++|+.|++++|.+. .+|.++..++.|+.+++..+..+
T Consensus 218 ~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 218 WISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp EEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 99999999974 8888999999999999999998 78889999999999998755444
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.1e-19 Score=189.64 Aligned_cols=233 Identities=22% Similarity=0.281 Sum_probs=140.2
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
++|++|+|++| .++.+|. .+++|++|+|++|. ++.+|. .+++|++|++++|. +..+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECC
Confidence 58999999998 5777877 67999999999975 677887 68999999999975 555655 56889999999
Q ss_pred CCCccccCccccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccC
Q 036075 82 GTDIKELPKHKRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLP 159 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp 159 (474)
+|.+..+|.. ..+|+.|. .+.+..+|. .+.+|+.|++++|.++.+| ..+++|+.|++++|. ++.+|
T Consensus 130 ~N~l~~lp~~-----l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~-l~~l~ 197 (622)
T 3g06_A 130 GNQLTSLPVL-----PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ-LASLP 197 (622)
T ss_dssp SSCCSCCCCC-----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCC
T ss_pred CCCCCcCCCC-----CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC-CCCCC
Confidence 9999988763 12233222 222333321 2334444444444444444 233445555554443 23333
Q ss_pred ccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCccc
Q 036075 160 STIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLR 239 (474)
Q Consensus 160 ~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~ 239 (474)
.. +++|+.|++++|. +..+|. .+++|+.|++++|.... +| ..+++|+
T Consensus 198 ~~---~~~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N~L~~------------------------lp--~~l~~L~ 244 (622)
T 3g06_A 198 TL---PSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGNRLTS------------------------LP--VLPSELK 244 (622)
T ss_dssp CC---CTTCCEEECCSSC-CSSCCC---CCTTCCEEECCSSCCSC------------------------CC--CCCTTCC
T ss_pred Cc---cchhhEEECcCCc-ccccCC---CCCCCCEEEccCCccCc------------------------CC--CCCCcCc
Confidence 32 2444555554432 223332 12445555555443321 22 2345666
Q ss_pred EEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceecccccc
Q 036075 240 KLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 240 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 295 (474)
.|++++|++.. +|. .+++|+.|++++|.++.+|..+..+++|+.|++++|+
T Consensus 245 ~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 245 ELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred EEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 67777666653 444 4566667777776666666666666667777666664
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.4e-19 Score=190.74 Aligned_cols=175 Identities=23% Similarity=0.171 Sum_probs=93.5
Q ss_pred CCcccEEEccCcCccc---cCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCC-CCccCCCCCc
Q 036075 118 MEHLLELHLEGTAIRG---LPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMP-GNFGKVESLE 193 (474)
Q Consensus 118 l~~L~~L~L~~~~i~~---l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~-~~l~~l~~L~ 193 (474)
+++|+.|+++++.+.. .+.....+.+|+++++..+.. ..++..+..+++|+.+++.++......+ ..+..+++++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccc
Confidence 5667777777776653 344566788899998887653 3455567778888888888776554433 3466778888
Q ss_pred EEecCCCCCCCCCCC--CchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCC
Q 036075 194 VLDLSGCKGPPLSSS--WYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSK 270 (474)
Q Consensus 194 ~L~l~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~ 270 (474)
.+++++|........ ..++.+..+............|. +..+++|+.|++++|++.. ..|..++.+++|++|+|++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCC
Confidence 888887764321110 11111111110000001111122 4445555555555555532 2234455555555555555
Q ss_pred CCCCccc-HhhhcCCCcceeccccc
Q 036075 271 NSFITLP-ASINRLFNLEKLELEDC 294 (474)
Q Consensus 271 ~~l~~lp-~~l~~l~~L~~L~l~~c 294 (474)
|+++.++ ..+..+++|++|+++++
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred CcCCCCChhHHhCCCCCCEEECCCC
Confidence 5555442 23455555555555555
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=186.91 Aligned_cols=254 Identities=19% Similarity=0.175 Sum_probs=199.3
Q ss_pred CCccEEEecCccccccccc-cccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHP-TLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~-~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++|++|++++| .++.++. .+..+++|++|++++|......|..+. +++|++|++++|......+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 58999999997 4666665 789999999999999854444455565 99999999999865544445589999999999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCc-Ccccc-CCcccCCCCCcEEeccCCcCCCc
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGT-AIRGL-PVSIEHLTGLVLLNLRDCKNLET 157 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~-~i~~l-~~~i~~l~~L~~L~L~~c~~l~~ 157 (474)
+++|.+..+|.. ..+..+++|++|++++| .+..+ +..++.+++|++|++++|.....
T Consensus 131 L~~n~l~~l~~~---------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 131 LLGNPYKTLGET---------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CTTCCCSSSCSS---------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCCCCCcccCch---------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 999999887751 13677899999999998 57776 45799999999999999986666
Q ss_pred cCccCCCCCCCCEEeccCCCCCccCCCC-ccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCC
Q 036075 158 LPSTIDGLKSLRNLYLSGCSKLKSMPGN-FGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLC 236 (474)
Q Consensus 158 lp~~l~~L~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~ 236 (474)
.|..+..+++|++|++++|.. ..+|.. ++.+++|+.|++++|........ .++......
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~~~~~ 249 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS-------------------ELSTGETNS 249 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCC
T ss_pred CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccc-------------------ccccccccc
Confidence 788899999999999999764 444433 34588999999999986542211 122234456
Q ss_pred cccEEEccCCCCCCC---CccccccCCCCCCEEeCCCCCCCcccHhh-hcCCCcceecccccccc
Q 036075 237 SLRKLDLSDSNLGEG---AIPNDIGNLCSLKELYLSKNSFITLPASI-NRLFNLEKLELEDCKRL 297 (474)
Q Consensus 237 ~L~~L~l~~~~l~~~---~~~~~l~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~l~~c~~l 297 (474)
.++.+++.++.+.+. .+|..+..+++|++|++++|+++.+|..+ ..+++|++|++++|+..
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 788889988877542 35677889999999999999999999875 89999999999999643
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2.1e-19 Score=170.71 Aligned_cols=204 Identities=24% Similarity=0.278 Sum_probs=138.6
Q ss_pred cccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCc
Q 036075 21 TLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNF 100 (474)
Q Consensus 21 ~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L 100 (474)
.++++++++.+++++ ..++.+|..+ .+++++|++++|......+..+.++++|++|++++|.+..++..
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EEECSTTCCEEECTT-SCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred cccccCCccEEECCC-CCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 356788899999988 4577787654 47889999999876666677888888999999988888766531
Q ss_pred cccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCc
Q 036075 101 ESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLK 180 (474)
Q Consensus 101 ~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~ 180 (474)
+.+++|++|++++|.++.+|..+..+++|++|++++|......+..+..+++|++|++++|....
T Consensus 74 ---------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 74 ---------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ---------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ---------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 45778888888888888888888888888888888876443334567777888888887765443
Q ss_pred cCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCC
Q 036075 181 SMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNL 260 (474)
Q Consensus 181 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l 260 (474)
..+..+..+++|+.|++++|.....+. ..+.++++|+.|++++|.+.. +|..+...
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~----------------------~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~ 194 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPA----------------------GLLNGLENLDTLLLQENSLYT--IPKGFFGS 194 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCT----------------------TTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred cChhhcccccCCCEEECCCCcCCccCH----------------------HHhcCcCCCCEEECCCCcCCc--cChhhccc
Confidence 333445566666666666665432110 013455566666666665542 55555555
Q ss_pred CCCCEEeCCCCCCC
Q 036075 261 CSLKELYLSKNSFI 274 (474)
Q Consensus 261 ~~L~~L~L~~~~l~ 274 (474)
++|+.|++++|.+.
T Consensus 195 ~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 195 HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCSEEECCSCCBC
T ss_pred ccCCeEEeCCCCcc
Confidence 56666666655443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=4.9e-22 Score=191.11 Aligned_cols=247 Identities=19% Similarity=0.168 Sum_probs=138.6
Q ss_pred cCCccEEEccCCcCCccchhhhcccCccceeeccCCCcccc--CccccccccCCccccccCCchhhHHHHhcCCcccEEE
Q 036075 48 MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKEL--PKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELH 125 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l--~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~ 125 (474)
.++|+.|++++|.. .+|..+... |+.|+++++.+... +.. ...-...+.++++|++|+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~----------------~~~~~~~~~~l~~L~~L~ 101 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSR----------------ILFGALRVLGISGLQELT 101 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHH----------------HHHHHHHHHTTSCCCEEE
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHH----------------HHHHHHHhcCcCCccEEE
Confidence 56667777777655 555544443 67777777766432 110 000000112567777777
Q ss_pred ccCcCccc-cCCcc--cCCCCCcEEeccCCcCCCccCccCCCC-----CCCCEEeccCCCCCccCCCCccCCCCCcEEec
Q 036075 126 LEGTAIRG-LPVSI--EHLTGLVLLNLRDCKNLETLPSTIDGL-----KSLRNLYLSGCSKLKSMPGNFGKVESLEVLDL 197 (474)
Q Consensus 126 L~~~~i~~-l~~~i--~~l~~L~~L~L~~c~~l~~lp~~l~~L-----~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l 197 (474)
+++|.+++ +|..+ +.+++|++|++++|.... +|..+..+ ++|++|++++|......+..++.+++|++|++
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 77777763 56554 667777777777765333 35555444 67777777776655555566777777777777
Q ss_pred CCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC--CCCCCcccEEEccCCCCCCC-Ccc-ccccCCCCCCEEeCCCCCC
Q 036075 198 SGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS--LSGLCSLRKLDLSDSNLGEG-AIP-NDIGNLCSLKELYLSKNSF 273 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~--l~~l~~L~~L~l~~~~l~~~-~~~-~~l~~l~~L~~L~L~~~~l 273 (474)
++|..... .+ ..+. +.++++|++|++++|++... .++ ..+..+++|++|++++|++
T Consensus 181 s~N~l~~~-----~~---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 181 SDNPELGE-----RG---------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CSCTTCHH-----HH---------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred CCCCcCcc-----hH---------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 77653210 00 0001 25566777777777766520 111 1234566777777777776
Q ss_pred Cccc--HhhhcCCCcceeccccccccccCCC-CCCCcceeeccccccccccccccccCccccccccccccccccC
Q 036075 274 ITLP--ASINRLFNLEKLELEDCKRLQSMPQ-LPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLG 345 (474)
Q Consensus 274 ~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~ 345 (474)
...+ ..+..+++|++|++++|. ++.+|. ++++|+.|+++++ .++.++ .+..+++|+.|.+.+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p--------~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNP--------SPDELPQVGNLSLKG 305 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCC--------CTTTSCEEEEEECTT
T ss_pred CcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCCh--------hHhhCCCCCEEeccC
Confidence 6543 344556677777777763 445553 3356677777665 344442 134455566665554
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.5e-19 Score=167.99 Aligned_cols=213 Identities=26% Similarity=0.230 Sum_probs=137.2
Q ss_pred CcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcC
Q 036075 39 LTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSM 118 (474)
Q Consensus 39 l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l 118 (474)
+..+|..+ .++|++|++++|......+..+.++++|++|++++|.+..++.. .+.++
T Consensus 19 l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l 75 (276)
T 2z62_A 19 FYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----------------------AYQSL 75 (276)
T ss_dssp CSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT----------------------TTTTC
T ss_pred ccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH----------------------HccCC
Confidence 44555433 35677777777654433344667777777777777776655431 35567
Q ss_pred CcccEEEccCcCccccC-CcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCc-cCCCCccCCCCCcEEe
Q 036075 119 EHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLK-SMPGNFGKVESLEVLD 196 (474)
Q Consensus 119 ~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~-~~~~~l~~l~~L~~L~ 196 (474)
++|++|++++|.+++++ ..+..+++|++|++++|......+..+..+++|++|++++|.... .+|..++.+++|+.|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 77777777777777654 457777777777777776444334456777778888887765543 3566777778888888
Q ss_pred cCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCccc-EEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc
Q 036075 197 LSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLR-KLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 197 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~-~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
+++|........ .+..+..++.|. .|++++|.+.. ++.......+|++|++++|+++.
T Consensus 156 Ls~N~l~~~~~~-------------------~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 156 LSSNKIQSIYCT-------------------DLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCSSCCCEECGG-------------------GGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSC
T ss_pred CCCCCCCcCCHH-------------------HhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCceee
Confidence 877765431100 000122233333 78888888753 55555555688888888888887
Q ss_pred ccHh-hhcCCCcceecccccc
Q 036075 276 LPAS-INRLFNLEKLELEDCK 295 (474)
Q Consensus 276 lp~~-l~~l~~L~~L~l~~c~ 295 (474)
+|.. +..+++|++|++++++
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSC
T ss_pred cCHhHhcccccccEEEccCCc
Confidence 7754 5778888888888774
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=3e-22 Score=203.23 Aligned_cols=324 Identities=17% Similarity=0.210 Sum_probs=188.7
Q ss_pred CCCccEEEecCccccc----cccccccccCcccEEecCCCCCCcccCCcc-c-cC----CccEEEccCCcCCc----cch
Q 036075 1 MPNFEELDLGGCTRLR----EIHPTLLLHKKIILLNLKDCKSLTTLPDKI-C-ME----SLKILVLSGCRKFK----NFR 66 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~----~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~-~-l~----~L~~L~L~~c~~l~----~~~ 66 (474)
+++|++|++++|.... .++..+..+++|++|++++|..-...+..+ . ++ +|++|++++|.... .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3677888888775332 345566677888888888765322222111 1 33 68888888876442 456
Q ss_pred hhhcccCccceeeccCCCccccCccc---c-ccccCCccccc--cCCc-----hhhHHHHhcCCcccEEEccCcCcccc-
Q 036075 67 EIVGSRKCLSELLLDGTDIKELPKHK---R-SKISSNFESFW--PFQF-----SEFSEIMTSMEHLLELHLEGTAIRGL- 134 (474)
Q Consensus 67 ~~~~~l~~L~~L~L~~~~l~~l~~~~---~-~~~~~~L~~l~--~~~~-----~~l~~~l~~l~~L~~L~L~~~~i~~l- 134 (474)
..+..+++|++|++++|.+....... . .....+|+.|. .+.+ ..++..+..+++|++|++++|.+.+.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 77778888888888888765321110 0 11122355443 2222 24566677778888888888776642
Q ss_pred CCccc-----CCCCCcEEeccCCcCCCc----cCccCCCCCCCCEEeccCCCCCcc----C-CCCccCCCCCcEEecCCC
Q 036075 135 PVSIE-----HLTGLVLLNLRDCKNLET----LPSTIDGLKSLRNLYLSGCSKLKS----M-PGNFGKVESLEVLDLSGC 200 (474)
Q Consensus 135 ~~~i~-----~l~~L~~L~L~~c~~l~~----lp~~l~~L~~L~~L~l~~c~~l~~----~-~~~l~~l~~L~~L~l~~~ 200 (474)
+..+. ..++|++|++++|..... ++..+..+++|++|++++|..... + +.....+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 11121 355788888887754332 455566777888888887643221 1 112234677888888877
Q ss_pred CCCCCCCCCchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCCC---cccccc-CCCCCCEEeCCCCCCCc
Q 036075 201 KGPPLSSSWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGA---IPNDIG-NLCSLKELYLSKNSFIT 275 (474)
Q Consensus 201 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~---~~~~l~-~l~~L~~L~L~~~~l~~ 275 (474)
..... .... ++. +..+++|++|++++|.+.+.. +...+. ..++|++|++++|.++.
T Consensus 267 ~l~~~-------~~~~------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 267 GITAK-------GCGD------------LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp CCCHH-------HHHH------------HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred CCCHH-------HHHH------------HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 54320 0000 111 345678888888888775321 111121 23688888888888773
Q ss_pred -----ccHhhhcCCCcceeccccccccccC---------CCCCCCcceeeccccccccccccccccCccccccccccccc
Q 036075 276 -----LPASINRLFNLEKLELEDCKRLQSM---------PQLPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDL 341 (474)
Q Consensus 276 -----lp~~l~~l~~L~~L~l~~c~~l~~l---------~~l~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l 341 (474)
++..+..+++|++|++++|. ++.. ....++|+.|++++|. ++...... + .-.+..+++|++|
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~-l-~~~l~~~~~L~~L 403 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSS-L-AATLLANHSLREL 403 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHH-H-HHHHHHCCCCCEE
T ss_pred HHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHH-H-HHHHHhCCCccEE
Confidence 56677788888888888883 3321 1113578888888873 43210000 0 0124557778888
Q ss_pred cccCCC
Q 036075 342 KLLGCN 347 (474)
Q Consensus 342 ~~~~c~ 347 (474)
++.++.
T Consensus 404 ~l~~N~ 409 (461)
T 1z7x_W 404 DLSNNC 409 (461)
T ss_dssp ECCSSS
T ss_pred ECCCCC
Confidence 777754
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=2.3e-20 Score=181.30 Aligned_cols=173 Identities=19% Similarity=0.235 Sum_probs=87.8
Q ss_pred ccEEEecCcccccccccccccc--CcccEEecCCCCCCcccCCccccCCccEEEccCCcCCcc-chhhhcccCccceeec
Q 036075 4 FEELDLGGCTRLREIHPTLLLH--KKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKN-FREIVGSRKCLSELLL 80 (474)
Q Consensus 4 L~~L~L~~c~~l~~~~~~~~~l--~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~-~~~~~~~l~~L~~L~L 80 (474)
++.++++++... +..+..+ ++++.|++.++......+..+.+++|++|++++|..... ++..+.++++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 455566554322 2333444 566666666654444444433466666666666653333 5555566666666666
Q ss_pred cCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCc-Cccc--cCCcccCCCCCcEEeccCCcCCCc
Q 036075 81 DGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGT-AIRG--LPVSIEHLTGLVLLNLRDCKNLET 157 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~-~i~~--l~~~i~~l~~L~~L~L~~c~~l~~ 157 (474)
++|.+.. ..+..+..+++|++|++++| .+++ ++..++.+++|++|++++|..++.
T Consensus 126 ~~~~l~~----------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 126 EGLRLSD----------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp TTCBCCH----------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred cCcccCH----------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 6654431 22334555566666666665 4442 444455555666666665533332
Q ss_pred --cCccCCCCC-CCCEEeccCCC-CC--ccCCCCccCCCCCcEEecCCCC
Q 036075 158 --LPSTIDGLK-SLRNLYLSGCS-KL--KSMPGNFGKVESLEVLDLSGCK 201 (474)
Q Consensus 158 --lp~~l~~L~-~L~~L~l~~c~-~l--~~~~~~l~~l~~L~~L~l~~~~ 201 (474)
++..+..++ +|++|++++|. .+ ..++..++.+++|+.|++++|.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 344444555 55555555553 12 2233333445555555555544
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.3e-18 Score=165.24 Aligned_cols=197 Identities=23% Similarity=0.200 Sum_probs=155.6
Q ss_pred cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEcc
Q 036075 48 MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLE 127 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~ 127 (474)
++++++++++++. ++.+|..+. ++++.|++++|.+..++. ..+.++++|++|+++
T Consensus 9 l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~L~ 63 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSL----------------------ATLMPYTRLTQLNLD 63 (290)
T ss_dssp STTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEG----------------------GGGTTCTTCCEEECT
T ss_pred cCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCH----------------------HHhhcCCCCCEEECC
Confidence 7788999998854 566776554 678999999998876543 347788999999999
Q ss_pred CcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCC
Q 036075 128 GTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSS 207 (474)
Q Consensus 128 ~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 207 (474)
+|.++.++.. +.+++|++|++++|. ++.+|..+..+++|++|++++|......+..++.+++|+.|++++|.....+.
T Consensus 64 ~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 64 RAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp TSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 9999988764 788999999999875 56888888889999999999976555445678889999999999887553111
Q ss_pred CCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccc-cccCCCCCCEEeCCCCCCCcccHhhhcCCCc
Q 036075 208 SWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPN-DIGNLCSLKELYLSKNSFITLPASINRLFNL 286 (474)
Q Consensus 208 ~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L 286 (474)
..+..+++|+.|++++|++.. +|. .+..+++|++|++++|+++.+|..+..+++|
T Consensus 142 ----------------------~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L 197 (290)
T 1p9a_G 142 ----------------------GLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197 (290)
T ss_dssp ----------------------TTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred ----------------------hhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccC
Confidence 115678889999999998863 554 4577889999999999999888888888888
Q ss_pred ceecccccc
Q 036075 287 EKLELEDCK 295 (474)
Q Consensus 287 ~~L~l~~c~ 295 (474)
+.|++++++
T Consensus 198 ~~l~L~~Np 206 (290)
T 1p9a_G 198 PFAFLHGNP 206 (290)
T ss_dssp SEEECCSCC
T ss_pred CeEEeCCCC
Confidence 888888764
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=6.4e-19 Score=168.92 Aligned_cols=189 Identities=20% Similarity=0.343 Sum_probs=129.6
Q ss_pred cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEcc
Q 036075 48 MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLE 127 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~ 127 (474)
+++|++|++++|. +..++ .+..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~~~~~------------------------~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITDLAP------------------------LKNLTKITELELS 93 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG------------------------GTTCCSCCEEECC
T ss_pred cCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCCCChh------------------------HccCCCCCEEEcc
Confidence 6666666666653 33344 45566667777776666654431 4556677777777
Q ss_pred CcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCC
Q 036075 128 GTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSS 207 (474)
Q Consensus 128 ~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 207 (474)
+|.+++++ .+..+++|++|++++|. ++.++. +..+++|++|++++|.. ..++. ++.+++|+.|++++|....
T Consensus 94 ~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~--- 165 (308)
T 1h6u_A 94 GNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSD--- 165 (308)
T ss_dssp SCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCC---
T ss_pred CCcCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCC---
Confidence 77776665 46677777777777765 344443 66777777777777643 33333 6677778888887776442
Q ss_pred CCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcc
Q 036075 208 SWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLE 287 (474)
Q Consensus 208 ~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~ 287 (474)
++.+..+++|+.|++++|.+.+ ++. +..+++|++|++++|++..++ .+..+++|+
T Consensus 166 ---------------------~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 166 ---------------------LTPLANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLF 220 (308)
T ss_dssp ---------------------CGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred ---------------------ChhhcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCC
Confidence 2225677888888888888864 443 778889999999999988887 488889999
Q ss_pred eecccccc
Q 036075 288 KLELEDCK 295 (474)
Q Consensus 288 ~L~l~~c~ 295 (474)
.|++++|+
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 99998885
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.2e-18 Score=160.88 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=85.4
Q ss_pred cccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccC
Q 036075 27 KIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPF 106 (474)
Q Consensus 27 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~ 106 (474)
..+.+++++ ..++.+|..+ .++|++|++++|......+..+.++++|++|++++|.+..++..
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~--------------- 79 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG--------------- 79 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT---------------
T ss_pred CCCEEEccC-CCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh---------------
Confidence 466777776 3456666533 35677777777654333334566677777777777766655532
Q ss_pred CchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCC
Q 036075 107 QFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGN 185 (474)
Q Consensus 107 ~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~ 185 (474)
.+.++++|++|++++|.++.+|. .+..+++|++|++++|......+..+..+++|++|++++|......+..
T Consensus 80 -------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 80 -------IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp -------TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -------hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 23556666667776666666553 3456666666666665533333344555666666666654332222222
Q ss_pred ccCCCCCcEEecCCCC
Q 036075 186 FGKVESLEVLDLSGCK 201 (474)
Q Consensus 186 l~~l~~L~~L~l~~~~ 201 (474)
++.+++|+.|++++|.
T Consensus 153 ~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQ 168 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCc
Confidence 4444555555554443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=6.3e-19 Score=166.24 Aligned_cols=211 Identities=24% Similarity=0.255 Sum_probs=166.2
Q ss_pred ccccccccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCcc
Q 036075 14 RLREIHPTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKH 91 (474)
Q Consensus 14 ~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~ 91 (474)
.+.++|..+. ++|++|++++|. ++.++. .+. +++|++|++++|......+..+.++++|++|++++|.+..++.
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 93 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL- 93 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-
Confidence 4556776553 679999999975 455543 455 9999999999986555455688999999999999999887653
Q ss_pred ccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCC-ccCccCCCCCCCC
Q 036075 92 KRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLE-TLPSTIDGLKSLR 169 (474)
Q Consensus 92 ~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~L~~L~ 169 (474)
..+.++++|++|++++|.+..++. .++.+++|++|++++|.... .+|..+..+++|+
T Consensus 94 ---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 94 ---------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp ---------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ---------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 246788999999999999998765 69999999999999987544 3688899999999
Q ss_pred EEeccCCCCCccCCCCccCCCCCc----EEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccC
Q 036075 170 NLYLSGCSKLKSMPGNFGKVESLE----VLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSD 245 (474)
Q Consensus 170 ~L~l~~c~~l~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 245 (474)
+|++++|......+..+..+.+|+ .|++++|.....+ +......+|+.|++++
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~-----------------------~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-----------------------PGAFKEIRLKELALDT 209 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC-----------------------TTSSCSCCEEEEECCS
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC-----------------------ccccCCCcccEEECCC
Confidence 999999876555555666666666 8999998754311 1223344899999999
Q ss_pred CCCCCCCccc-cccCCCCCCEEeCCCCCCC
Q 036075 246 SNLGEGAIPN-DIGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 246 ~~l~~~~~~~-~l~~l~~L~~L~L~~~~l~ 274 (474)
|.+.. +|. .+..+++|++|++++|.+.
T Consensus 210 n~l~~--~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKS--VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSC--CCTTTTTTCCSCCEEECCSSCBC
T ss_pred Cceee--cCHhHhcccccccEEEccCCccc
Confidence 99874 444 4688999999999999876
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.2e-18 Score=162.07 Aligned_cols=199 Identities=22% Similarity=0.251 Sum_probs=140.1
Q ss_pred CCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccC
Q 036075 49 ESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEG 128 (474)
Q Consensus 49 ~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~ 128 (474)
.+.++++++++. ++.+|..+. ++|+.|++++|.+..++.. .+.++++|++|++++
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSK----------------------AFHRLTKLRLLYLND 70 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTT----------------------SSSSCTTCCEEECCS
T ss_pred CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHH----------------------HhcCCCCCCEEECCC
Confidence 457788888754 556665443 5788888888887766542 356778888888888
Q ss_pred cCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCC
Q 036075 129 TAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSS 207 (474)
Q Consensus 129 ~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 207 (474)
|.+++++.. +..+++|++|++++|......+..+..+++|++|++++|......+..++.+++|++|++++|.....+
T Consensus 71 n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~- 149 (270)
T 2o6q_A 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP- 149 (270)
T ss_dssp SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-
Confidence 888887665 477888888888887644333345677888888888887655555566778888888888887654311
Q ss_pred CCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-hhhcCCCc
Q 036075 208 SWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA-SINRLFNL 286 (474)
Q Consensus 208 ~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L 286 (474)
...+..+++|+.|++++|.+.. ..+..+..+++|++|++++|+++.+|. .+..+++|
T Consensus 150 ---------------------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 150 ---------------------KGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ---------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------------------HhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 1115677788888888887753 223346777888888888888877765 36677788
Q ss_pred ceecccccc
Q 036075 287 EKLELEDCK 295 (474)
Q Consensus 287 ~~L~l~~c~ 295 (474)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 888877764
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.2e-19 Score=167.94 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=165.0
Q ss_pred cccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCc
Q 036075 21 TLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNF 100 (474)
Q Consensus 21 ~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L 100 (474)
....+++|+.|++.+|. ++.++....+++|++|++++|.. ..+ ..+.++++|++|++++|.+..++..
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~n~l~~~~~~--------- 103 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGNQLQSLPNG--------- 103 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECTTSCCCCCCTT---------
T ss_pred ccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECCCCccCccChh---------
Confidence 35678999999999964 66677655599999999999864 444 3678899999999999998877642
Q ss_pred cccccCCchhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCC
Q 036075 101 ESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKL 179 (474)
Q Consensus 101 ~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l 179 (474)
.+.++++|++|++++|.+++++.. ++.+++|++|++++|......+..+..+++|++|++++|...
T Consensus 104 -------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 104 -------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp -------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 367889999999999999987654 789999999999998644333445688999999999998765
Q ss_pred ccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccC
Q 036075 180 KSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGN 259 (474)
Q Consensus 180 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~ 259 (474)
...+..++.+++|+.|++++|.....+ ...+..+++|+.|++++|.+. +.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~l~~N~~~--------~~ 220 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVP----------------------DGVFDRLTSLQYIWLHDNPWD--------CT 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCC----------------------TTTTTTCTTCCEEECCSSCBC--------CC
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccC----------------------HHHHhCCcCCCEEEccCCCcc--------cc
Confidence 555556789999999999998755311 112678899999999999764 34
Q ss_pred CCCCCEEeCCCCCCC-cccHhhhcCCC
Q 036075 260 LCSLKELYLSKNSFI-TLPASINRLFN 285 (474)
Q Consensus 260 l~~L~~L~L~~~~l~-~lp~~l~~l~~ 285 (474)
+++|+.|+++.|.+. .+|.+++.++.
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 668999999988887 77877776554
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6e-19 Score=169.12 Aligned_cols=198 Identities=18% Similarity=0.280 Sum_probs=163.6
Q ss_pred ccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcc
Q 036075 22 LLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFE 101 (474)
Q Consensus 22 ~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~ 101 (474)
...+++|+.|++++| .+..+|....+++|++|++++|. +..++. +..+++|++|++++|.+..++.
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~~----------- 102 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVSA----------- 102 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCGG-----------
T ss_pred HHHcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCchh-----------
Confidence 457899999999997 56677764459999999999985 455555 8899999999999998876542
Q ss_pred ccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCcc
Q 036075 102 SFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKS 181 (474)
Q Consensus 102 ~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~ 181 (474)
+..+++|++|++++|.+++++. +..+++|++|++++|. +..++. +..+++|+.|++++|.. ..
T Consensus 103 -------------~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~ 165 (308)
T 1h6u_A 103 -------------IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV-SD 165 (308)
T ss_dssp -------------GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CC
T ss_pred -------------hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC-CC
Confidence 6778999999999999999875 8999999999999986 455554 78899999999999754 44
Q ss_pred CCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCC
Q 036075 182 MPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLC 261 (474)
Q Consensus 182 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~ 261 (474)
++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+ ++ .+..++
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~L~~N~l~~--~~-~l~~l~ 217 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISD------------------------ISPLASLPNLIEVHLKNNQISD--VS-PLANTS 217 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCCEEECTTSCCCB--CG-GGTTCT
T ss_pred Chh-hcCCCCCCEEECCCCccCc------------------------ChhhcCCCCCCEEEccCCccCc--cc-cccCCC
Confidence 554 8899999999999998653 2236778999999999999975 44 488999
Q ss_pred CCCEEeCCCCCCCcccH
Q 036075 262 SLKELYLSKNSFITLPA 278 (474)
Q Consensus 262 ~L~~L~L~~~~l~~lp~ 278 (474)
+|+.|++++|.++..|.
T Consensus 218 ~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 218 NLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCCEEEEEEEEEECCCE
T ss_pred CCCEEEccCCeeecCCe
Confidence 99999999998877664
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.1e-18 Score=161.05 Aligned_cols=207 Identities=17% Similarity=0.237 Sum_probs=136.2
Q ss_pred CCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCC-ccccCccccccccCCccccccCCchhhHHH
Q 036075 36 CKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTD-IKELPKHKRSKISSNFESFWPFQFSEFSEI 114 (474)
Q Consensus 36 c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~-l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~ 114 (474)
|..++.+|. ..++|++|++++|......+..+.++++|++|++++|. +..++.. .
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----------------------~ 75 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH----------------------S 75 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT----------------------T
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh----------------------H
Confidence 334666666 34477777777765433333467777777777777775 6665542 3
Q ss_pred HhcCCcccEEEccC-cCccccCC-cccCCCCCcEEeccCCcCCCccCccCCCCCCCC---EEeccCCCCCccCC-CCccC
Q 036075 115 MTSMEHLLELHLEG-TAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLR---NLYLSGCSKLKSMP-GNFGK 188 (474)
Q Consensus 115 l~~l~~L~~L~L~~-~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~---~L~l~~c~~l~~~~-~~l~~ 188 (474)
+.++++|++|++++ +.++.++. .+..+++|++|++++|. ++.+|. +..+++|+ +|++++|..+..++ ..++.
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 56677777888877 77777653 56777788888887765 445665 66677777 88888774455444 34677
Q ss_pred CCCCc-EEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCC-CCCCCc-cccccCC-CCCC
Q 036075 189 VESLE-VLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSN-LGEGAI-PNDIGNL-CSLK 264 (474)
Q Consensus 189 l~~L~-~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~-l~~~~~-~~~l~~l-~~L~ 264 (474)
+++|+ .|++++|.....+. ..+.. ++|+.|++++|. +.. + +..+..+ ++|+
T Consensus 154 l~~L~~~L~l~~n~l~~i~~----------------------~~~~~-~~L~~L~L~~n~~l~~--i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQG----------------------YAFNG-TKLDAVYLNKNKYLTV--IDKDAFGGVYSGPS 208 (239)
T ss_dssp TBSSEEEEECCSCCCCEECT----------------------TTTTT-CEEEEEECTTCTTCCE--ECTTTTTTCSBCCS
T ss_pred hhcceeEEEcCCCCCcccCH----------------------hhcCC-CCCCEEEcCCCCCccc--CCHHHhhccccCCc
Confidence 77777 77777776442111 01233 678888888884 652 4 3456677 7888
Q ss_pred EEeCCCCCCCcccHhhhcCCCcceecccccc
Q 036075 265 ELYLSKNSFITLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 265 ~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 295 (474)
+|++++|+++.+|.. .+++|+.|+++++.
T Consensus 209 ~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 209 LLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEECCCCccccCChh--HhccCceeeccCcc
Confidence 888888888877754 67777777777664
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.3e-21 Score=198.55 Aligned_cols=298 Identities=20% Similarity=0.189 Sum_probs=190.2
Q ss_pred CCCccEEEecCccccccccccc-cccC----cccEEecCCCCCCc----ccCCccc-cCCccEEEccCCcCCccchhhh-
Q 036075 1 MPNFEELDLGGCTRLREIHPTL-LLHK----KIILLNLKDCKSLT----TLPDKIC-MESLKILVLSGCRKFKNFREIV- 69 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~-~~l~----~L~~L~L~~c~~l~----~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~- 69 (474)
+++|++|+|++|......+..+ ..++ +|++|++++|..-. .++..+. +++|++|++++|......+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 4789999999875433222222 2344 69999999986442 4566565 8899999999987443323322
Q ss_pred ----cccCccceeeccCCCccccCcc---ccccccCCccccc--cCCchh-----hHHHHh-cCCcccEEEccCcCccc-
Q 036075 70 ----GSRKCLSELLLDGTDIKELPKH---KRSKISSNFESFW--PFQFSE-----FSEIMT-SMEHLLELHLEGTAIRG- 133 (474)
Q Consensus 70 ----~~l~~L~~L~L~~~~l~~l~~~---~~~~~~~~L~~l~--~~~~~~-----l~~~l~-~l~~L~~L~L~~~~i~~- 133 (474)
...++|++|++++|.+...... ..+..+.+|+.|. .+.+.. +...+. ..++|++|++++|.+..
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 2246799999999887753311 1123345566554 233332 222222 36699999999998886
Q ss_pred ----cCCcccCCCCCcEEeccCCcCCCc----c-CccCCCCCCCCEEeccCCCCCcc----CCCCccCCCCCcEEecCCC
Q 036075 134 ----LPVSIEHLTGLVLLNLRDCKNLET----L-PSTIDGLKSLRNLYLSGCSKLKS----MPGNFGKVESLEVLDLSGC 200 (474)
Q Consensus 134 ----l~~~i~~l~~L~~L~L~~c~~l~~----l-p~~l~~L~~L~~L~l~~c~~l~~----~~~~l~~l~~L~~L~l~~~ 200 (474)
++..+..+++|++|++++|..... + +.....+++|++|++++|..... ++..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 567788899999999999853221 2 22234688999999999854432 5666777899999999998
Q ss_pred CCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCC---ccccccCCCCCCEEeCCCCCCCcc-
Q 036075 201 KGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGA---IPNDIGNLCSLKELYLSKNSFITL- 276 (474)
Q Consensus 201 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~---~~~~l~~l~~L~~L~L~~~~l~~l- 276 (474)
..... ....+.... ....++|++|++++|.+++.. ++..+..+++|++|++++|.+...
T Consensus 295 ~i~~~----~~~~l~~~l-------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 295 ELGDE----GARLLCETL-------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp CCHHH----HHHHHHHHH-------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred CCchH----HHHHHHHHh-------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 64210 000010000 123357889999998886532 455667788899999999887633
Q ss_pred cHhh----hc-CCCcceeccccccccc-----cCCCC---CCCcceeeccccc
Q 036075 277 PASI----NR-LFNLEKLELEDCKRLQ-----SMPQL---PPSIEEVRVNGCA 316 (474)
Q Consensus 277 p~~l----~~-l~~L~~L~l~~c~~l~-----~l~~l---~~~L~~L~i~~c~ 316 (474)
+..+ .. .++|++|++++|. ++ .++.. .++|++|+++++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2223 22 6789999998884 33 33321 2678888888874
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.1e-18 Score=164.39 Aligned_cols=221 Identities=21% Similarity=0.217 Sum_probs=133.5
Q ss_pred cCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccc
Q 036075 25 HKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFW 104 (474)
Q Consensus 25 l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~ 104 (474)
+.++..+++.++. +........+++|+.|++++|. +..++ .+..+++|++|++++|.+..++
T Consensus 18 ~~~l~~l~l~~~~-~~~~~~~~~l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n~l~~~~--------------- 79 (272)
T 3rfs_A 18 FAETIKANLKKKS-VTDAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNKLHDIS--------------- 79 (272)
T ss_dssp HHHHHHHHHTCSC-TTSEECHHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTSCCCCCG---------------
T ss_pred HHHHHHHHhcCcc-cccccccccccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCCCCCCch---------------
Confidence 4455556666643 3333222337888888888865 33333 4667788888888887776543
Q ss_pred cCCchhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCC
Q 036075 105 PFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMP 183 (474)
Q Consensus 105 ~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~ 183 (474)
.+..+++|++|++++|.+++++.. ++.+++|++|++++|......+..+..+++|++|++++|......+
T Consensus 80 ---------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 80 ---------ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp ---------GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ---------hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 256677788888888877776543 5777778888887776443344446677777777777765443333
Q ss_pred CCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCC
Q 036075 184 GNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSL 263 (474)
Q Consensus 184 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L 263 (474)
..++.+++|+.|++++|.....+ ...+.++++|+.|++++|++.. ..+..+..+++|
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 207 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLP----------------------EGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSL 207 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred HHhccCccCCEEECCCCCcCccC----------------------HHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCC
Confidence 44566777777777776543211 0114556666777777666652 233345666666
Q ss_pred CEEeCCCCCCCcccHhhhcCCCcceeccccccccccCC
Q 036075 264 KELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMP 301 (474)
Q Consensus 264 ~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~ 301 (474)
++|++++|.+. +.+++|+.|++..+..-..+|
T Consensus 208 ~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 208 QYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred CEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 77766666543 234456666665554433333
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=4.9e-21 Score=200.53 Aligned_cols=340 Identities=16% Similarity=0.083 Sum_probs=199.1
Q ss_pred CCCccEEEecCcccccc---cccccc------------ccCcccEEecCCCCCCcccCCccc--cCC-ccEEEccCCcCC
Q 036075 1 MPNFEELDLGGCTRLRE---IHPTLL------------LHKKIILLNLKDCKSLTTLPDKIC--MES-LKILVLSGCRKF 62 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~---~~~~~~------------~l~~L~~L~L~~c~~l~~lp~~~~--l~~-L~~L~L~~c~~l 62 (474)
+|+|++|+|++|....+ +|...+ .+++|++|+|++|..-...+..+. +++ |++|+|++|..+
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 58999999999876542 222222 789999999999854333333333 444 999999999744
Q ss_pred cc--chhhhcccCccceeeccCCCccccCcc---ccccccCCccccc--cCCc-----hhhHHHHhcCCcccEEEccCcC
Q 036075 63 KN--FREIVGSRKCLSELLLDGTDIKELPKH---KRSKISSNFESFW--PFQF-----SEFSEIMTSMEHLLELHLEGTA 130 (474)
Q Consensus 63 ~~--~~~~~~~l~~L~~L~L~~~~l~~l~~~---~~~~~~~~L~~l~--~~~~-----~~l~~~l~~l~~L~~L~L~~~~ 130 (474)
.. ++....++++|++|+|++|.+.+.... .....+.+|+.|. .+.+ ..++..+.++++|++|+++++.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 32 445566899999999999987543211 1122344555553 2222 4677788899999999999998
Q ss_pred ccccCCcccCCCCCcEEeccCCcCC---CccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCC
Q 036075 131 IRGLPVSIEHLTGLVLLNLRDCKNL---ETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSS 207 (474)
Q Consensus 131 i~~l~~~i~~l~~L~~L~L~~c~~l---~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 207 (474)
+.+++..++.+++|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.......
T Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 8888888888999999999864333 234456777888999988874 345566777788899999999887321000
Q ss_pred ---CCchhhHHHhhhccCCCCccCCCC-CCCCCcccEEEccC----------C-CCCCCCccccccCCCCCCEEeCCCCC
Q 036075 208 ---SWYLPFLISLMRRCSDPMALGFPS-LSGLCSLRKLDLSD----------S-NLGEGAIPNDIGNLCSLKELYLSKNS 272 (474)
Q Consensus 208 ---~~~~~~l~~l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~----------~-~l~~~~~~~~l~~l~~L~~L~L~~~~ 272 (474)
...+++++.+... .+..+..++. ...+++|++|++++ | .+++..++.....+++|++|++..++
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 0111111111000 0001111111 23456666666662 2 33332233334446666666665555
Q ss_pred CC-cccHhhhc-CCCcceecccc---ccccccCCC---------CCCCcceeecccccc-ccccccccccCccccccccc
Q 036075 273 FI-TLPASINR-LFNLEKLELED---CKRLQSMPQ---------LPPSIEEVRVNGCAS-LETLSGALKLCNSEYISINC 337 (474)
Q Consensus 273 l~-~lp~~l~~-l~~L~~L~l~~---c~~l~~l~~---------l~~~L~~L~i~~c~~-L~~l~~~~~l~~l~~~~c~~ 337 (474)
++ ..+..+.. +++|++|++++ |..++..|. -.++|+.|++++|.. +...... . ....|++
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~----~-~~~~~~~ 464 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS----Y-IGQYSPN 464 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH----H-HHHSCTT
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH----H-HHHhCcc
Confidence 55 22333333 66677776663 334444321 024556666655443 1111000 0 0123666
Q ss_pred cccccccCCC
Q 036075 338 IDDLKLLGCN 347 (474)
Q Consensus 338 L~~l~~~~c~ 347 (474)
|+.|.+.+|.
T Consensus 465 L~~L~L~~n~ 474 (592)
T 3ogk_B 465 VRWMLLGYVG 474 (592)
T ss_dssp CCEEEECSCC
T ss_pred ceEeeccCCC
Confidence 7777776654
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=6.3e-20 Score=178.14 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=144.1
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCCCCcc-cCCccc-cCCccEEEccCCcCCccchhhhcccCccceee
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTT-LPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELL 79 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~-lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~ 79 (474)
++++.|++.++ .+...+..+..+++|++|++++|..... +|..+. +++|++|++++|......+..+.++++|++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 68999999997 4555556677899999999999874433 676666 99999999999986667888899999999999
Q ss_pred ccCC-CccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCc-Cccc--cCCcccCCC-CCcEEeccCCc-
Q 036075 80 LDGT-DIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGT-AIRG--LPVSIEHLT-GLVLLNLRDCK- 153 (474)
Q Consensus 80 L~~~-~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~-~i~~--l~~~i~~l~-~L~~L~L~~c~- 153 (474)
+++| .++. ..++..+.++++|++|++++| .+++ ++..++.++ +|++|++++|.
T Consensus 149 L~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 149 LSGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CTTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 9998 4542 235667889999999999999 8885 677788999 99999999995
Q ss_pred CC--CccCccCCCCCCCCEEeccCCCCC-ccCCCCccCCCCCcEEecCCCC
Q 036075 154 NL--ETLPSTIDGLKSLRNLYLSGCSKL-KSMPGNFGKVESLEVLDLSGCK 201 (474)
Q Consensus 154 ~l--~~lp~~l~~L~~L~~L~l~~c~~l-~~~~~~l~~l~~L~~L~l~~~~ 201 (474)
.+ ..+|..+..+++|++|++++|..+ ...+..+..+++|+.|++++|.
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 34 356666778999999999999844 4555667777888888887775
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.8e-18 Score=159.44 Aligned_cols=206 Identities=17% Similarity=0.249 Sum_probs=162.9
Q ss_pred ccccccccccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccchh-hhcccCccceeeccC-CCccc
Q 036075 12 CTRLREIHPTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFRE-IVGSRKCLSELLLDG-TDIKE 87 (474)
Q Consensus 12 c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~~-~~~~l~~L~~L~L~~-~~l~~ 87 (474)
|..++++|. + .++|++|++++|. ++.+|. .+. +++|++|++++|..++.++. .+.++++|++|++++ |.+..
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCccccCC-C--CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 555777877 3 3489999999965 566655 454 99999999999875666654 789999999999998 88887
Q ss_pred cCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCc---EEeccCCcCCCccCc-cCC
Q 036075 88 LPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLV---LLNLRDCKNLETLPS-TID 163 (474)
Q Consensus 88 l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~---~L~L~~c~~l~~lp~-~l~ 163 (474)
++.. .+.++++|++|++++|.++++|. ++.+++|+ +|++++|..++.+|. .+.
T Consensus 96 i~~~----------------------~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 96 IDPD----------------------ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp ECTT----------------------SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred cCHH----------------------HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCccccc
Confidence 7642 36788999999999999999987 88888888 999999955776665 478
Q ss_pred CCCCCC-EEeccCCCCCccCCCCccCCCCCcEEecCCCC-CCCCCCCCchhhHHHhhhccCCCCccCCCCCCCC-CcccE
Q 036075 164 GLKSLR-NLYLSGCSKLKSMPGNFGKVESLEVLDLSGCK-GPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGL-CSLRK 240 (474)
Q Consensus 164 ~L~~L~-~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l-~~L~~ 240 (474)
.+++|+ +|++++|... .+|......++|+.|++++|+ ....+ ...+.++ ++|+.
T Consensus 153 ~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~----------------------~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID----------------------KDAFGGVYSGPSL 209 (239)
T ss_dssp TTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEEC----------------------TTTTTTCSBCCSE
T ss_pred chhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCC----------------------HHHhhccccCCcE
Confidence 899999 9999997654 666554444899999999985 43211 1126778 89999
Q ss_pred EEccCCCCCCCCccccccCCCCCCEEeCCCC
Q 036075 241 LDLSDSNLGEGAIPNDIGNLCSLKELYLSKN 271 (474)
Q Consensus 241 L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~ 271 (474)
|++++|++.. +|.. .+++|+.|+++++
T Consensus 210 L~l~~N~l~~--l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 210 LDVSQTSVTA--LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCCCCC--CCCT--TCTTCSEEECTTC
T ss_pred EECCCCcccc--CChh--HhccCceeeccCc
Confidence 9999999964 6654 7889999999876
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.1e-21 Score=203.29 Aligned_cols=339 Identities=15% Similarity=0.118 Sum_probs=205.0
Q ss_pred CCCccEEEecCccccccccccccc-cCc-ccEEecCCCCCCc--ccCCccc-cCCccEEEccCCcCCcc----chhhhcc
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLL-HKK-IILLNLKDCKSLT--TLPDKIC-MESLKILVLSGCRKFKN----FREIVGS 71 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~-l~~-L~~L~L~~c~~l~--~lp~~~~-l~~L~~L~L~~c~~l~~----~~~~~~~ 71 (474)
+++|++|+|++|......+..+.. +++ |++|+|++|..+. .++.... +++|++|+|++|..... ++.....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 588999999998544444445554 444 9999999987433 2333333 89999999999864333 5556678
Q ss_pred cCccceeeccCCCccccCcc---ccccccCCccccc--cCCchhhHHHHhcCCcccEEEccCcCc----cccCCcccCCC
Q 036075 72 RKCLSELLLDGTDIKELPKH---KRSKISSNFESFW--PFQFSEFSEIMTSMEHLLELHLEGTAI----RGLPVSIEHLT 142 (474)
Q Consensus 72 l~~L~~L~L~~~~l~~l~~~---~~~~~~~~L~~l~--~~~~~~l~~~l~~l~~L~~L~L~~~~i----~~l~~~i~~l~ 142 (474)
+++|+.|+++++.+..+... .....+.+|+.|. .+.+..++..+.++++|++|++++... ...+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 89999999999887633221 1123345666654 455667888899999999999975322 12445567777
Q ss_pred CCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCcc-CCCCccCCCCCcEEecCCCCCCC-CCC-CCchhhHHHhhh
Q 036075 143 GLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKS-MPGNFGKVESLEVLDLSGCKGPP-LSS-SWYLPFLISLMR 219 (474)
Q Consensus 143 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~l~~~~~~~-~~~-~~~~~~l~~l~~ 219 (474)
+|+.|+++++ ....+|..+..+++|++|++++|..... ++..+..+++|+.|++.++-... ... ...+++++.+..
T Consensus 271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 7888877764 3455666666777788888877762211 11224566677777665221000 000 000011111111
Q ss_pred c-----------cCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccccC-CCCCCEEeCC----CCCCCc------c
Q 036075 220 R-----------CSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGN-LCSLKELYLS----KNSFIT------L 276 (474)
Q Consensus 220 ~-----------~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~-l~~L~~L~L~----~~~l~~------l 276 (474)
. +.......++. ..++++|++|+++.+++++. .+..+.. +++|++|+++ .+.++. +
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 1 01111111111 34578899999977777643 3334443 8899999996 456665 3
Q ss_pred cHhhhcCCCcceeccccccc-cc-----cCCCCCCCcceeeccccccccccccccccCccccccccccccccccCCC
Q 036075 277 PASINRLFNLEKLELEDCKR-LQ-----SMPQLPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGCN 347 (474)
Q Consensus 277 p~~l~~l~~L~~L~l~~c~~-l~-----~l~~l~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c~ 347 (474)
+..+..+++|++|++++|.. +. .+....++|+.|++++|. +...... -.+..|++|+.|++.+|.
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-----~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM-----EFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH-----HHHTCCTTCCEEEEESCC
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH-----HHHhcCcccCeeeccCCC
Confidence 44577789999999987754 22 222234678888888775 3221100 013567888888888887
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.2e-21 Score=205.12 Aligned_cols=340 Identities=16% Similarity=0.197 Sum_probs=170.3
Q ss_pred CCCccEEEecCcccccccc---------------ccccccCcccEEecCCCCCCcccCCcc--ccCCccEEEccCCcCCc
Q 036075 1 MPNFEELDLGGCTRLREIH---------------PTLLLHKKIILLNLKDCKSLTTLPDKI--CMESLKILVLSGCRKFK 63 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~---------------~~~~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~ 63 (474)
+|+|++|++++|....++. .....+++|++|+|++|......+..+ .+++|++|++++|..+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 5788888888887655432 112467788888888876443333333 37888888888886555
Q ss_pred c--chhhhcccCccceeeccCCCccccCcc---ccccccCCccccccCC------chhhHHHHhcCCcccEEEccCc-Cc
Q 036075 64 N--FREIVGSRKCLSELLLDGTDIKELPKH---KRSKISSNFESFWPFQ------FSEFSEIMTSMEHLLELHLEGT-AI 131 (474)
Q Consensus 64 ~--~~~~~~~l~~L~~L~L~~~~l~~l~~~---~~~~~~~~L~~l~~~~------~~~l~~~l~~l~~L~~L~L~~~-~i 131 (474)
. ++..+.++++|++|++++|.+.+.... .....+.+|+.|.... ...+...+..+++|++|+++++ .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 4 556666788888888888875542211 0111233444443111 1334444555666666666665 33
Q ss_pred cccCCcccCCCCCcEE------------------------------------------------------eccCCcCCCc
Q 036075 132 RGLPVSIEHLTGLVLL------------------------------------------------------NLRDCKNLET 157 (474)
Q Consensus 132 ~~l~~~i~~l~~L~~L------------------------------------------------------~L~~c~~l~~ 157 (474)
.+++..+..+++|+.| ++++|. +..
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~ 303 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQS 303 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCH
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCH
Confidence 3333334444444444 444443 211
Q ss_pred --cCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCC------CCCCC------CchhhHHHhhhccCC
Q 036075 158 --LPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGP------PLSSS------WYLPFLISLMRRCSD 223 (474)
Q Consensus 158 --lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~------~~~~~------~~~~~l~~l~~~~~~ 223 (474)
++..+..+++|++|++++|..-..++.....+++|+.|++.+|... ..... ..++++..+...+..
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 1111233444444444443110111111123455555555332100 00000 001111111111111
Q ss_pred CCccCCCCC-CCCCcccEEEcc--C----CCCCC----CCccccccCCCCCCEEeCCCCCCC-cccHhhhc-CCCcceec
Q 036075 224 PMALGFPSL-SGLCSLRKLDLS--D----SNLGE----GAIPNDIGNLCSLKELYLSKNSFI-TLPASINR-LFNLEKLE 290 (474)
Q Consensus 224 ~~~~~l~~l-~~l~~L~~L~l~--~----~~l~~----~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~-l~~L~~L~ 290 (474)
.....+..+ ..+++|+.|+++ + +++++ ..++..+..+++|++|++++ .++ ..+..+.. +++|+.|+
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence 111111112 246777777777 2 34432 12223355677788888866 444 22233333 77888888
Q ss_pred ccccccccc-CC---CCCCCcceeeccccccccccccccccCccccccccccccccccCCCc
Q 036075 291 LEDCKRLQS-MP---QLPPSIEEVRVNGCASLETLSGALKLCNSEYISINCIDDLKLLGCNG 348 (474)
Q Consensus 291 l~~c~~l~~-l~---~l~~~L~~L~i~~c~~L~~l~~~~~l~~l~~~~c~~L~~l~~~~c~~ 348 (474)
+++|..-.. ++ .-.++|+.|++++|+- ...... -....+++|+.|++.+|..
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~-----~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL-----ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHH-----HTGGGGGGSSEEEEESSCC
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHH-----HHHHhCCCCCEEeeeCCCC
Confidence 887752111 11 1136788888888873 221110 0134578899999999876
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=8e-19 Score=168.48 Aligned_cols=221 Identities=22% Similarity=0.197 Sum_probs=167.3
Q ss_pred CccEEEecCcccccc-cc--ccccccCcccEEecCCCCCCcccCCcc--c-cCCccEEEccCCcCCccch----hhhccc
Q 036075 3 NFEELDLGGCTRLRE-IH--PTLLLHKKIILLNLKDCKSLTTLPDKI--C-MESLKILVLSGCRKFKNFR----EIVGSR 72 (474)
Q Consensus 3 nL~~L~L~~c~~l~~-~~--~~~~~l~~L~~L~L~~c~~l~~lp~~~--~-l~~L~~L~L~~c~~l~~~~----~~~~~l 72 (474)
.++.+.+.++..... +. .....+++|++|++++|...+..|..+ . +++|++|++++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467888887643321 11 112345779999999988777777765 5 9999999999987665433 344578
Q ss_pred CccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccc---cC--CcccCCCCCcEE
Q 036075 73 KCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRG---LP--VSIEHLTGLVLL 147 (474)
Q Consensus 73 ~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~---l~--~~i~~l~~L~~L 147 (474)
++|++|++++|.+..++. ..++.+++|++|++++|.+.+ ++ ..++.+++|++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSC----------------------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp SCCCEEEEECCSSCCCCT----------------------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred cCCCEEEeeCCCcchhhH----------------------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 999999999999987653 236788999999999998764 43 335789999999
Q ss_pred eccCCcCCCccCcc----CCCCCCCCEEeccCCCCCccCCCCccCC---CCCcEEecCCCCCCCCCCCCchhhHHHhhhc
Q 036075 148 NLRDCKNLETLPST----IDGLKSLRNLYLSGCSKLKSMPGNFGKV---ESLEVLDLSGCKGPPLSSSWYLPFLISLMRR 220 (474)
Q Consensus 148 ~L~~c~~l~~lp~~----l~~L~~L~~L~l~~c~~l~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~ 220 (474)
++++|. ++.++.. +..+++|++|++++|......|..++.+ ++|++|++++|.....
T Consensus 203 ~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l--------------- 266 (310)
T 4glp_A 203 ALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV--------------- 266 (310)
T ss_dssp BCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC---------------
T ss_pred ECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch---------------
Confidence 999986 4544442 4678999999999988766667777776 6999999999986542
Q ss_pred cCCCCccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc
Q 036075 221 CSDPMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 221 ~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
|. + .++|+.|++++|++.. +|. +..+++|+.|++++|.++.
T Consensus 267 ---------p~~~--~~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 267 ---------PKGL--PAKLRVLDLSSNRLNR--APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ---------CSCC--CSCCSCEECCSCCCCS--CCC-TTSCCCCSCEECSSTTTSC
T ss_pred ---------hhhh--cCCCCEEECCCCcCCC--Cch-hhhCCCccEEECcCCCCCC
Confidence 22 2 2789999999999975 454 6788999999999998763
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=2.2e-19 Score=177.96 Aligned_cols=245 Identities=18% Similarity=0.160 Sum_probs=175.9
Q ss_pred cccccccccccCcccEEecCCCCCCcc----cCCccc-cCCccEEEccCCcC--Cc-cchhh-------hcccCccceee
Q 036075 15 LREIHPTLLLHKKIILLNLKDCKSLTT----LPDKIC-MESLKILVLSGCRK--FK-NFREI-------VGSRKCLSELL 79 (474)
Q Consensus 15 l~~~~~~~~~l~~L~~L~L~~c~~l~~----lp~~~~-l~~L~~L~L~~c~~--l~-~~~~~-------~~~l~~L~~L~ 79 (474)
...++..+..+++|++|+|++|..-.. ++..+. +++|++|+|++|.. +. .+|.. +.++++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 345667777889999999999855443 333344 88999999998732 22 23433 46889999999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccc-----cCCcccCC---------CCCc
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRG-----LPVSIEHL---------TGLV 145 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~-----l~~~i~~l---------~~L~ 145 (474)
|++|.+... ....++..+..+++|++|++++|.+.. ++..+..+ ++|+
T Consensus 101 Ls~n~l~~~------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 101 LSDNAFGPT------------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCSCCCCTT------------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCcCCHH------------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 999987642 123466778889999999999998874 34444445 8999
Q ss_pred EEeccCCcCC-CccC---ccCCCCCCCCEEeccCCCCCc-----cCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHH
Q 036075 146 LLNLRDCKNL-ETLP---STIDGLKSLRNLYLSGCSKLK-----SMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLIS 216 (474)
Q Consensus 146 ~L~L~~c~~l-~~lp---~~l~~L~~L~~L~l~~c~~l~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 216 (474)
+|++++|... ..++ ..+..+++|++|++++|.... ..+..+..+++|+.|++++|..... ..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------g~-- 233 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GS-- 233 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HH--
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------HH--
Confidence 9999998754 2344 456678899999999986542 2344778899999999999874210 00
Q ss_pred hhhccCCCCccCCCC-CCCCCcccEEEccCCCCCCC---Cccccc--cCCCCCCEEeCCCCCCCc-----ccHhh-hcCC
Q 036075 217 LMRRCSDPMALGFPS-LSGLCSLRKLDLSDSNLGEG---AIPNDI--GNLCSLKELYLSKNSFIT-----LPASI-NRLF 284 (474)
Q Consensus 217 l~~~~~~~~~~~l~~-l~~l~~L~~L~l~~~~l~~~---~~~~~l--~~l~~L~~L~L~~~~l~~-----lp~~l-~~l~ 284 (474)
..+|. +..+++|+.|++++|.+.+. .++..+ +.+++|++|+|++|.+.. +|..+ .+++
T Consensus 234 ----------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 234 ----------SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp ----------HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred ----------HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 01111 56788999999999998642 134555 348999999999999986 88888 6689
Q ss_pred Ccceeccccccc
Q 036075 285 NLEKLELEDCKR 296 (474)
Q Consensus 285 ~L~~L~l~~c~~ 296 (474)
+|++|++++|+.
T Consensus 304 ~L~~L~l~~N~l 315 (386)
T 2ca6_A 304 DLLFLELNGNRF 315 (386)
T ss_dssp TCCEEECTTSBS
T ss_pred CceEEEccCCcC
Confidence 999999999853
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=164.80 Aligned_cols=227 Identities=18% Similarity=0.144 Sum_probs=172.4
Q ss_pred cCcccEEecCCCCCCc----ccCCccccCCccEEEccCCcCCccchhhh--cccCccceeeccCCCccccCccccccccC
Q 036075 25 HKKIILLNLKDCKSLT----TLPDKICMESLKILVLSGCRKFKNFREIV--GSRKCLSELLLDGTDIKELPKHKRSKISS 98 (474)
Q Consensus 25 l~~L~~L~L~~c~~l~----~lp~~~~l~~L~~L~L~~c~~l~~~~~~~--~~l~~L~~L~L~~~~l~~l~~~~~~~~~~ 98 (474)
..+++.+.+.++.... .+.....+++|++|++++|......|..+ ..+++|++|++++|.+.....
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-------- 134 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS-------- 134 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS--------
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh--------
Confidence 3457888888865422 22333347789999999998777788777 899999999999999874221
Q ss_pred CccccccCCchhhH-HHHhcCCcccEEEccCcCccccC-CcccCCCCCcEEeccCCcCCCc--cC--ccCCCCCCCCEEe
Q 036075 99 NFESFWPFQFSEFS-EIMTSMEHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLET--LP--STIDGLKSLRNLY 172 (474)
Q Consensus 99 ~L~~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~c~~l~~--lp--~~l~~L~~L~~L~ 172 (474)
.++ ..+..+++|++|++++|.+..++ ..++.+++|++|++++|..... ++ ..+..+++|++|+
T Consensus 135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 111 23457999999999999999875 5789999999999999975432 32 3346899999999
Q ss_pred ccCCCCCccCCC----CccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCC
Q 036075 173 LSGCSKLKSMPG----NFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNL 248 (474)
Q Consensus 173 l~~c~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l 248 (474)
+++|.. ..++. .++.+++|++|++++|....... ..+..+..+++|++|++++|++
T Consensus 204 Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-------------------~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 204 LRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-------------------PSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp CCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------------------SCCSSCCCCTTCCCEECCSSCC
T ss_pred CCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccch-------------------hhHHhccCcCcCCEEECCCCCC
Confidence 999864 43333 24678999999999998654200 0111233347999999999999
Q ss_pred CCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceecccccc
Q 036075 249 GEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~ 295 (474)
. .+|..+. ++|++|++++|+++.+|. +..+++|+.|++++++
T Consensus 264 ~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 E--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred C--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 7 4787764 899999999999998875 7889999999999985
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2.4e-20 Score=195.32 Aligned_cols=262 Identities=17% Similarity=0.201 Sum_probs=159.8
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccC---------------Cccc-cCCccEEEccCCcCCccchhh
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLP---------------DKIC-MESLKILVLSGCRKFKNFREI 68 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp---------------~~~~-l~~L~~L~L~~c~~l~~~~~~ 68 (474)
+.+++.+|.... ....+..+++|+.|++++|..+..+. .... +++|++|++++|......+..
T Consensus 46 ~~l~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAVS-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSSC-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeeccccccC-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 456777664432 22456788999999999987665332 1122 889999999999755555555
Q ss_pred hc-ccCccceeeccCC-CccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccc-----cCCcccCC
Q 036075 69 VG-SRKCLSELLLDGT-DIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRG-----LPVSIEHL 141 (474)
Q Consensus 69 ~~-~l~~L~~L~L~~~-~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~-----l~~~i~~l 141 (474)
+. .+++|++|++++| .+.. ..++..+.++++|++|++++|.+.+ ++.....+
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~---------------------~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFST---------------------DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEH---------------------HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred HHHhCCCCcEEeCCCcCCCCH---------------------HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 54 7899999999988 4432 2245566788999999999887654 33344577
Q ss_pred CCCcEEeccCCc-CCC--ccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhh
Q 036075 142 TGLVLLNLRDCK-NLE--TLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLM 218 (474)
Q Consensus 142 ~~L~~L~L~~c~-~l~--~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 218 (474)
++|+.|++++|. .+. .++..+..+++|++|++++|..+..++..+..+++|+.|++..+.... ....+..+....
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~~l 261 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV--RPDVYSGLSVAL 261 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC--CHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc--chhhHHHHHHHH
Confidence 889999998876 111 122223456889999999886666666677778888888877664210 000011111000
Q ss_pred hccCC---------CCccCCCC-CCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC--cccHhhhcCCCc
Q 036075 219 RRCSD---------PMALGFPS-LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI--TLPASINRLFNL 286 (474)
Q Consensus 219 ~~~~~---------~~~~~l~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L 286 (474)
..+.+ .....++. +..+++|++|++++|.+.+..+...+..+++|++|++++| +. .++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 11110 01111222 2245677777777777654334444556677777777766 22 233333446666
Q ss_pred ceecc
Q 036075 287 EKLEL 291 (474)
Q Consensus 287 ~~L~l 291 (474)
++|++
T Consensus 341 ~~L~L 345 (594)
T 2p1m_B 341 RELRV 345 (594)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66666
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1.9e-19 Score=178.39 Aligned_cols=249 Identities=18% Similarity=0.150 Sum_probs=176.8
Q ss_pred CCcccCCccc-cCCccEEEccCCcCCcc----chhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhH
Q 036075 38 SLTTLPDKIC-MESLKILVLSGCRKFKN----FREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFS 112 (474)
Q Consensus 38 ~l~~lp~~~~-l~~L~~L~L~~c~~l~~----~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~ 112 (474)
.+..++..+. +++|++|+|++|..... ++..+.++++|++|+|++|.+..+.... ...+..+.
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~------------~~~~~~l~ 87 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI------------PEALRLLL 87 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS------------HHHHHHHH
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccch------------hHHHHHHH
Confidence 3445666666 89999999999976554 3445778999999999998665433210 01223445
Q ss_pred HHHhcCCcccEEEccCcCccc-----cCCcccCCCCCcEEeccCCcCCC----ccCccCCCC---------CCCCEEecc
Q 036075 113 EIMTSMEHLLELHLEGTAIRG-----LPVSIEHLTGLVLLNLRDCKNLE----TLPSTIDGL---------KSLRNLYLS 174 (474)
Q Consensus 113 ~~l~~l~~L~~L~L~~~~i~~-----l~~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~L---------~~L~~L~l~ 174 (474)
..+..+++|++|++++|.+.. ++..+..+++|++|++++|.... .++..+..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 566899999999999999886 67788999999999999987532 233334444 899999999
Q ss_pred CCCCC-ccCC---CCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCC-CCCCCCcccEEEccCCCCC
Q 036075 175 GCSKL-KSMP---GNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP-SLSGLCSLRKLDLSDSNLG 249 (474)
Q Consensus 175 ~c~~l-~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~l~ 249 (474)
+|... ..++ ..+..+++|+.|++++|.... ..... ..+ .+..+++|+.|++++|.++
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-------~g~~~-----------l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-------EGIEH-----------LLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH-------HHHHH-----------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH-------hHHHH-----------HHHHHhhcCCCccEEECcCCCCC
Confidence 98754 3333 356678899999999987531 00000 112 3677889999999999885
Q ss_pred C---CCccccccCCCCCCEEeCCCCCCCc-----ccHhhhc--CCCcceeccccccccc----cCCCC----CCCcceee
Q 036075 250 E---GAIPNDIGNLCSLKELYLSKNSFIT-----LPASINR--LFNLEKLELEDCKRLQ----SMPQL----PPSIEEVR 311 (474)
Q Consensus 250 ~---~~~~~~l~~l~~L~~L~L~~~~l~~-----lp~~l~~--l~~L~~L~l~~c~~l~----~l~~l----~~~L~~L~ 311 (474)
+ ..+|..+..+++|++|+|++|.+.. ++..+.. +++|++|++++|..-. .+|.. .++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 3 2367778889999999999999874 4667744 8999999999985332 24431 25677777
Q ss_pred ccccc
Q 036075 312 VNGCA 316 (474)
Q Consensus 312 i~~c~ 316 (474)
+++|+
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 76654
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=1e-16 Score=148.83 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=145.6
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
+.++++++++ .++.+|..+. ++++.|+|++|......+..+. +++|++|+|++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678888885 7788887665 6899999999765555555555 9999999999987666666778999999999999
Q ss_pred CCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCc
Q 036075 82 GTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPS 160 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~ 160 (474)
+|.+..++.. .+..+++|++|++++|.++.++.. ++.+++|++|++++|. ++.+|.
T Consensus 92 ~n~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 148 (251)
T 3m19_A 92 NNQLASLPLG----------------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPA 148 (251)
T ss_dssp TSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCcccccChh----------------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCH
Confidence 9999877642 467889999999999999998765 6889999999999986 455554
Q ss_pred -cCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCC
Q 036075 161 -TIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPP 204 (474)
Q Consensus 161 -~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~ 204 (474)
.+..+++|++|++++|......+..+..+++|+.|++++|....
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 68899999999999987665555678999999999999998643
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=1e-16 Score=156.47 Aligned_cols=232 Identities=16% Similarity=0.165 Sum_probs=129.9
Q ss_pred EecCCCCCCcccCCccccCCccEEEccCCcCCccch-hhhcccCccceeeccCCCccc-cCccccccccCCccccccCCc
Q 036075 31 LNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFR-EIVGSRKCLSELLLDGTDIKE-LPKHKRSKISSNFESFWPFQF 108 (474)
Q Consensus 31 L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~~~l~~-l~~~~~~~~~~~L~~l~~~~~ 108 (474)
++.++ ..++++|..+ .+++++|+|++|. ++.+| ..|.++++|++|+|++|.+.+ ++..
T Consensus 14 v~C~~-~~Lt~iP~~l-~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~----------------- 73 (350)
T 4ay9_X 14 FLCQE-SKVTEIPSDL-PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD----------------- 73 (350)
T ss_dssp EEEES-TTCCSCCTTC-CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----------------
T ss_pred EEecC-CCCCccCcCc-CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----------------
Confidence 44333 3455666533 4566666666654 34444 346666666666666666532 3321
Q ss_pred hhhHHHHhcCCcccE-EEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCC-C
Q 036075 109 SEFSEIMTSMEHLLE-LHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPG-N 185 (474)
Q Consensus 109 ~~l~~~l~~l~~L~~-L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~-~ 185 (474)
.+.+++++++ +.+.++.++.+ |..++.+++|++|++++|......+.......++..|++.++..+..++. .
T Consensus 74 -----~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 74 -----VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp -----SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred -----HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc
Confidence 2344555443 34445666665 34466666677777666653322223334455566666666555555543 2
Q ss_pred ccCC-CCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccc-cccCCCCC
Q 036075 186 FGKV-ESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPN-DIGNLCSL 263 (474)
Q Consensus 186 l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~l~~L 263 (474)
+..+ ..++.|++++|....++ +......+|++|++.+++.. +.+|. .+..+++|
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~-----------------------~~~f~~~~L~~l~l~~~n~l-~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIH-----------------------NSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGP 204 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEEC-----------------------TTSSTTEEEEEEECTTCTTC-CCCCTTTTTTEECC
T ss_pred hhhcchhhhhhccccccccCCC-----------------------hhhccccchhHHhhccCCcc-cCCCHHHhccCccc
Confidence 3333 34667777776644311 11233456777777754332 22554 45777888
Q ss_pred CEEeCCCCCCCcccHhhhcCCCcceeccccccccccCCCCC--CCcceeecc
Q 036075 264 KELYLSKNSFITLPASINRLFNLEKLELEDCKRLQSMPQLP--PSIEEVRVN 313 (474)
Q Consensus 264 ~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~l~--~~L~~L~i~ 313 (474)
++|++++|+++.+|. ..+.+|+.|.+.++..++.+|.+. ++|+.+++.
T Consensus 205 ~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 205 VILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp SEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred chhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 888888888888775 335667777777777777776543 455555553
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=8.1e-17 Score=152.93 Aligned_cols=148 Identities=30% Similarity=0.408 Sum_probs=106.8
Q ss_pred HhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcE
Q 036075 115 MTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEV 194 (474)
Q Consensus 115 l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~ 194 (474)
+..+++|++|++++|.+++++. +..+++|++|++++|. ++.++. +..+++|++|++++|.. ..+ ..+..+++|+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n~i-~~~-~~l~~l~~L~~ 138 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLES 138 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTSCC-CCC-GGGGGCTTCCE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCCcC-CCC-hhhcCCCCCCE
Confidence 4556666777777777666655 6677777777777665 344443 66777777777777643 333 34667778888
Q ss_pred EecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC
Q 036075 195 LDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~ 274 (474)
|++++|.... ++.+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.++
T Consensus 139 L~l~~n~l~~------------------------~~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 139 LYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEccCCcCCc------------------------chhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCC
Confidence 8888776543 2336678889999999998865 443 888999999999999999
Q ss_pred cccHhhhcCCCcceecccccc
Q 036075 275 TLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 275 ~lp~~l~~l~~L~~L~l~~c~ 295 (474)
.++. +..+++|+.|++++++
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEE
T ss_pred CChh-hccCCCCCEEECcCCc
Confidence 8874 8889999999999885
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=2.6e-18 Score=168.61 Aligned_cols=252 Identities=16% Similarity=0.102 Sum_probs=137.3
Q ss_pred EEecCccccccccccccccCcccEEecCCCCCCcccC-----Cccc-cC-CccEEEccCCcCCccchhhhccc-----Cc
Q 036075 7 LDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLP-----DKIC-ME-SLKILVLSGCRKFKNFREIVGSR-----KC 74 (474)
Q Consensus 7 L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp-----~~~~-l~-~L~~L~L~~c~~l~~~~~~~~~l-----~~ 74 (474)
+.++++...+.+|..+...++|++|+|++|. ++..+ ..+. ++ +|++|+|++|......+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4555654444455555555668888888865 44433 2333 66 78888888876544445445443 77
Q ss_pred cceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcC-CcccEEEccCcCccccCC-----cccC-CCCCcEE
Q 036075 75 LSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSM-EHLLELHLEGTAIRGLPV-----SIEH-LTGLVLL 147 (474)
Q Consensus 75 L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l-~~L~~L~L~~~~i~~l~~-----~i~~-l~~L~~L 147 (474)
|++|++++|.+...+. ..+...+..+ ++|++|++++|.+.+.+. .+.. .++|++|
T Consensus 82 L~~L~Ls~n~l~~~~~------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSS------------------DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp CCEEECCSSCGGGSCH------------------HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred ccEEECcCCcCChHHH------------------HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 8888888877764332 2233445555 678888888887776443 1333 3577777
Q ss_pred eccCCcCCC----ccCccCCCCC-CCCEEeccCCCCCccCCC----CccCC-CCCcEEecCCCCCCCCCCCCchhhHHHh
Q 036075 148 NLRDCKNLE----TLPSTIDGLK-SLRNLYLSGCSKLKSMPG----NFGKV-ESLEVLDLSGCKGPPLSSSWYLPFLISL 217 (474)
Q Consensus 148 ~L~~c~~l~----~lp~~l~~L~-~L~~L~l~~c~~l~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~l 217 (474)
++++|.... .++..+..++ +|++|++++|......+. .+..+ ++|+.|++++|...... ...+..
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~----~~~l~~- 218 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS----YAELAY- 218 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC----HHHHHH-
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH----HHHHHH-
Confidence 777775432 2333334444 777777777654333322 22333 46777777766532100 000000
Q ss_pred hhccCCCCccCCCCCCC-CCcccEEEccCCCCCCCCc---cccccCCCCCCEEeCCCCCCCc--------ccHhhhcCCC
Q 036075 218 MRRCSDPMALGFPSLSG-LCSLRKLDLSDSNLGEGAI---PNDIGNLCSLKELYLSKNSFIT--------LPASINRLFN 285 (474)
Q Consensus 218 ~~~~~~~~~~~l~~l~~-l~~L~~L~l~~~~l~~~~~---~~~l~~l~~L~~L~L~~~~l~~--------lp~~l~~l~~ 285 (474)
.+.. .++|++|++++|.+.+... ...+..+++|++|++++|.+.. ++..+..+++
T Consensus 219 -------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 219 -------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp -------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred -------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 0112 2466666666666654222 2334556666666666665332 2233445556
Q ss_pred cceecccccc
Q 036075 286 LEKLELEDCK 295 (474)
Q Consensus 286 L~~L~l~~c~ 295 (474)
|+.|++++++
T Consensus 286 L~~LdL~~N~ 295 (362)
T 3goz_A 286 IILVDKNGKE 295 (362)
T ss_dssp EEEECTTSCB
T ss_pred eEEEecCCCc
Confidence 6666666653
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=4.4e-16 Score=144.55 Aligned_cols=174 Identities=25% Similarity=0.324 Sum_probs=133.7
Q ss_pred CccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccC
Q 036075 73 KCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRD 151 (474)
Q Consensus 73 ~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~ 151 (474)
...+.++++++.+..+|.. + .++++.|+++++.+..++. .++.+++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-----------------------~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-----------------------I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY 68 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-----------------------C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCC-----------------------C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCC
Confidence 3567788888888877753 1 2578889999999988654 688899999999999
Q ss_pred CcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC
Q 036075 152 CKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS 231 (474)
Q Consensus 152 c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 231 (474)
|......+..+..+++|++|++++|......+..++.+++|++|++++|.....+. ..
T Consensus 69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~ 126 (251)
T 3m19_A 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----------------------GV 126 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------TT
T ss_pred CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh----------------------hH
Confidence 87655556667888999999999877655555667888999999999887543111 11
Q ss_pred CCCCCcccEEEccCCCCCCCCccc-cccCCCCCCEEeCCCCCCCcccH-hhhcCCCcceecccccc
Q 036075 232 LSGLCSLRKLDLSDSNLGEGAIPN-DIGNLCSLKELYLSKNSFITLPA-SINRLFNLEKLELEDCK 295 (474)
Q Consensus 232 l~~l~~L~~L~l~~~~l~~~~~~~-~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 295 (474)
+.++++|+.|++++|++.. ++. .++.+++|++|+|++|++..++. .+..+++|+.|++++++
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5778889999999998863 444 67888899999999998887765 67788888888888874
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=4e-16 Score=152.24 Aligned_cols=235 Identities=20% Similarity=0.261 Sum_probs=181.0
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccCCc-cc-cCCccEEEccCCcCCccchh-hhcccCccce-eec
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDK-IC-MESLKILVLSGCRKFKNFRE-IVGSRKCLSE-LLL 80 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~c~~l~~~~~-~~~~l~~L~~-L~L 80 (474)
+.++.++ ..++++|..+ .+++++|+|++| .++.+|.. +. +++|++|+|++|...+.++. .|.++++|++ +.+
T Consensus 12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3455555 4678888766 468999999996 57788863 44 99999999999988787764 6788888776 556
Q ss_pred cCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccC
Q 036075 81 DGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLP 159 (474)
Q Consensus 81 ~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp 159 (474)
.+|++..++. ..+..+++|++|++++|.++.+|. .+....++..|++.++..+..++
T Consensus 88 ~~N~l~~l~~----------------------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 88 KANNLLYINP----------------------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EETTCCEECT----------------------TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred cCCcccccCc----------------------hhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 6788887754 246789999999999999998765 45667789999998888788777
Q ss_pred cc-CCCC-CCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCC--CCCC
Q 036075 160 ST-IDGL-KSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPS--LSGL 235 (474)
Q Consensus 160 ~~-l~~L-~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~--l~~l 235 (474)
.. +..+ ..++.|++++|. ++.++.......+|+.|++.++.... .+|. +.++
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~-----------------------~i~~~~f~~l 201 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLE-----------------------ELPNDVFHGA 201 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCC-----------------------CCCTTTTTTE
T ss_pred ccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCccc-----------------------CCCHHHhccC
Confidence 53 4454 468999999864 56677766677889999998654322 2332 7889
Q ss_pred CcccEEEccCCCCCCCCccccccCCCCCCEEeCCCC-CCCcccHhhhcCCCcceeccccc
Q 036075 236 CSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKN-SFITLPASINRLFNLEKLELEDC 294 (474)
Q Consensus 236 ~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~c 294 (474)
++|+.|++++|+++. +|. ..+.+|+.|.+.++ +++.+| .+..+++|+.+++.+.
T Consensus 202 ~~L~~LdLs~N~l~~--lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 202 SGPVILDISRTRIHS--LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECCSEEECTTSCCCC--CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cccchhhcCCCCcCc--cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 999999999999975 665 34778899988775 678898 5888999999998753
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=7.5e-16 Score=160.38 Aligned_cols=147 Identities=29% Similarity=0.398 Sum_probs=73.5
Q ss_pred hcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEE
Q 036075 116 TSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVL 195 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L 195 (474)
..+++|+.|+|++|.+.+++. +..+++|+.|+|++|. +..+| .+..+++|+.|++++|... .+ ..+..+++|+.|
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESL 136 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEE
T ss_pred ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCEE
Confidence 344445555555554444443 4445555555555443 22333 3444555555555554322 22 234455555555
Q ss_pred ecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc
Q 036075 196 DLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
++++|.... ++.+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|.+..
T Consensus 137 ~Ls~N~l~~------------------------l~~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 137 YLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECCSSCCCC------------------------CGGGGSCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCccCC------------------------chhhcccCCCCEEECcCCcCCC--chh-hccCCCCCEEECcCCCCCC
Confidence 555554332 1224455566666666665543 222 5556666666666666665
Q ss_pred ccHhhhcCCCcceecccccc
Q 036075 276 LPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 276 lp~~l~~l~~L~~L~l~~c~ 295 (474)
+| .+..+++|+.|+|++|+
T Consensus 190 l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEE
T ss_pred Ch-HHccCCCCCEEEccCCc
Confidence 54 35556666666666654
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.1e-17 Score=164.16 Aligned_cols=237 Identities=17% Similarity=0.089 Sum_probs=166.5
Q ss_pred CCccEEEecCcccccccc-----ccccccC-cccEEecCCCCCCcccCCccc-c-----CCccEEEccCCcCCccchhh-
Q 036075 2 PNFEELDLGGCTRLREIH-----PTLLLHK-KIILLNLKDCKSLTTLPDKIC-M-----ESLKILVLSGCRKFKNFREI- 68 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~-----~~~~~l~-~L~~L~L~~c~~l~~lp~~~~-l-----~~L~~L~L~~c~~l~~~~~~- 68 (474)
++|++|+|++|. ++..+ ..+..++ +|++|+|++|..-...+..+. + ++|++|+|++|......+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 459999999985 55444 5667788 999999999854443343333 3 89999999999865555543
Q ss_pred ---hccc-CccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhc-CCcccEEEccCcCccc-----cCCcc
Q 036075 69 ---VGSR-KCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTS-MEHLLELHLEGTAIRG-----LPVSI 138 (474)
Q Consensus 69 ---~~~l-~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~-l~~L~~L~L~~~~i~~-----l~~~i 138 (474)
+..+ ++|++|++++|.+...+. ..+...+.. ..+|++|++++|.+.+ ++..+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSS------------------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCH------------------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHH------------------HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 4444 899999999999886543 234445556 3699999999998883 45556
Q ss_pred cCCC-CCcEEeccCCcCCCccCc----cCCCC-CCCCEEeccCCCCCcc----CCCCccC-CCCCcEEecCCCCCCCCCC
Q 036075 139 EHLT-GLVLLNLRDCKNLETLPS----TIDGL-KSLRNLYLSGCSKLKS----MPGNFGK-VESLEVLDLSGCKGPPLSS 207 (474)
Q Consensus 139 ~~l~-~L~~L~L~~c~~l~~lp~----~l~~L-~~L~~L~l~~c~~l~~----~~~~l~~-l~~L~~L~l~~~~~~~~~~ 207 (474)
..++ +|++|++++|......+. .+..+ ++|++|++++|..... ++..+.. .++|++|++++|.......
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 6665 999999999875444332 33445 5999999999864432 3444444 4589999999997543110
Q ss_pred CCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCC---C---CccccccCCCCCCEEeCCCCCCCc
Q 036075 208 SWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGE---G---AIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 208 ~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~---~---~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
..+. ..+..+++|+.|++++|.+.+ + .++..+..+++|+.|++++|++..
T Consensus 243 ----~~l~--------------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 243 ----ENLK--------------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp ----HHHH--------------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred ----HHHH--------------HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 0000 014677889999999997432 1 133456788899999999998873
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.8e-16 Score=139.42 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=126.2
Q ss_pred hcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEE
Q 036075 116 TSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVL 195 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L 195 (474)
..+++|++|+++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56788999999999999998 6999999999999999 455544 68889999999999987766678889999999999
Q ss_pred ecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCC-CCCCCccccccCCCCCCEEeCCCCCCC
Q 036075 196 DLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSN-LGEGAIPNDIGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~-l~~~~~~~~l~~l~~L~~L~L~~~~l~ 274 (474)
++++|.... ...+.+..+++|++|++++|. +.+ ++ .+..+++|++|++++|.+.
T Consensus 118 ~Ls~n~i~~----------------------~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDD----------------------SILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBG----------------------GGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBCCC
T ss_pred EecCCccCc----------------------HhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCCCc
Confidence 999987542 011226778999999999998 754 55 6888999999999999999
Q ss_pred cccHhhhcCCCcceecccccc
Q 036075 275 TLPASINRLFNLEKLELEDCK 295 (474)
Q Consensus 275 ~lp~~l~~l~~L~~L~l~~c~ 295 (474)
.++ .+..+++|++|++++++
T Consensus 173 ~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 173 DYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCT-TGGGCSSCCEEEECBC-
T ss_pred ChH-HhccCCCCCEEEeeCcc
Confidence 887 78889999999998874
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=2.3e-15 Score=155.11 Aligned_cols=193 Identities=21% Similarity=0.267 Sum_probs=114.9
Q ss_pred cccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccC
Q 036075 27 KIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPF 106 (474)
Q Consensus 27 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~ 106 (474)
+|+.|++++|. ++.+|..+ +++|++|+|++|. +..+| ..+++|+.|++++|.+..+|.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l-~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~---------------- 117 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL-PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPE---------------- 117 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC-CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC----------------
T ss_pred CccEEEeCCCC-CCccCHhH-cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcch----------------
Confidence 67777777653 45566544 3667777777764 33555 345667777777776665542
Q ss_pred CchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCc
Q 036075 107 QFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNF 186 (474)
Q Consensus 107 ~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l 186 (474)
+.+ +|++|++++|.++.+|. .+++|+.|++++|. ++.+|. .+++|++|++++|. +..+|. +
T Consensus 118 --------l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l 178 (571)
T 3cvr_A 118 --------LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-L 178 (571)
T ss_dssp --------CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-C
T ss_pred --------hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-h
Confidence 111 67777777777777666 56777777777765 344555 45677777777754 333555 4
Q ss_pred cCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEE
Q 036075 187 GKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKEL 266 (474)
Q Consensus 187 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L 266 (474)
. ++|+.|++++|.+..++. ++. .+ ....+.|+.|++++|.+.. +|..+..+++|+.|
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~---~~~--~L--------------~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA---VPV--RN--------------HHSEETEIFFRCRENRITH--IPENILSLDPTCTI 235 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC---CC------------------------CCEEEECCSSCCCC--CCGGGGGSCTTEEE
T ss_pred h--CCCCEEECcCCCCCchhh---HHH--hh--------------hcccccceEEecCCCccee--cCHHHhcCCCCCEE
Confidence 4 677777777776543222 000 00 1112234777777777753 67666667777777
Q ss_pred eCCCCCCC-cccHhhhcC
Q 036075 267 YLSKNSFI-TLPASINRL 283 (474)
Q Consensus 267 ~L~~~~l~-~lp~~l~~l 283 (474)
+|++|.++ .+|..+..+
T Consensus 236 ~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSSCCHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHh
Confidence 77777776 455555443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.5e-16 Score=139.66 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=123.3
Q ss_pred cccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEec
Q 036075 70 GSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNL 149 (474)
Q Consensus 70 ~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L 149 (474)
..+++|+.|+++++.+..++. +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~------------------------l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l 95 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG------------------------IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRI 95 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT------------------------GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEE
T ss_pred hhcCCccEEeccCCCccChHH------------------------HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEe
Confidence 567788888888888776652 677889999999999877765 5888999999999
Q ss_pred cCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCC-CCCCCCCCchhhHHHhhhccCCCCccC
Q 036075 150 RDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCK-GPPLSSSWYLPFLISLMRRCSDPMALG 228 (474)
Q Consensus 150 ~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~ 228 (474)
++|......+..+..+++|++|++++|......+..++.+++|++|++++|. ...
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~------------------------ 151 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD------------------------ 151 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC------------------------
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc------------------------
Confidence 9987666678888899999999999987766667778889999999999987 432
Q ss_pred CCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC
Q 036075 229 FPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 229 l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~ 274 (474)
++.+.++++|+.|++++|.+.+ ++ .+..+++|++|++++|++.
T Consensus 152 ~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 152 IMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC---
T ss_pred cHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCcccC
Confidence 3346788999999999999875 44 7888999999999999764
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.9e-15 Score=155.69 Aligned_cols=180 Identities=21% Similarity=0.211 Sum_probs=144.6
Q ss_pred CCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccC
Q 036075 49 ESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEG 128 (474)
Q Consensus 49 ~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~ 128 (474)
.+|+.|++++|. +..+|..+ .++|++|++++|.+..+|. .+++|++|++++
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip~--------------------------~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLPE--------------------------LPASLEYLDACD 109 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCCC--------------------------CCTTCCEEECCS
T ss_pred CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCccccc--------------------------ccCCCCEEEccC
Confidence 389999999976 45577655 3789999999998887662 257899999999
Q ss_pred cCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCC
Q 036075 129 TAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSS 208 (474)
Q Consensus 129 ~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 208 (474)
|.++.+|. +.. +|++|++++|. ++.+|. .+++|+.|++++|.. ..+|. .+++|+.|++++|....
T Consensus 110 N~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~---- 174 (571)
T 3cvr_A 110 NRLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTF---- 174 (571)
T ss_dssp SCCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC----
T ss_pred CCCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCC----
Confidence 99999988 665 99999999986 555777 689999999999764 45776 57899999999998553
Q ss_pred CchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCC-------CEEeCCCCCCCcccHhhh
Q 036075 209 WYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSL-------KELYLSKNSFITLPASIN 281 (474)
Q Consensus 209 ~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L-------~~L~L~~~~l~~lp~~l~ 281 (474)
+|.+. ++|+.|++++|++.. +|. +.. +| +.|++++|.++.+|..+.
T Consensus 175 --------------------lp~l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~ 227 (571)
T 3cvr_A 175 --------------------LPELP--ESLEALDVSTNLLES--LPA-VPV--RNHHSEETEIFFRCRENRITHIPENIL 227 (571)
T ss_dssp --------------------CCCCC--TTCCEEECCSSCCSS--CCC-CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred --------------------cchhh--CCCCEEECcCCCCCc--hhh-HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence 23333 789999999999974 777 544 77 999999999999999999
Q ss_pred cCCCcceecccccccccc
Q 036075 282 RLFNLEKLELEDCKRLQS 299 (474)
Q Consensus 282 ~l~~L~~L~l~~c~~l~~ 299 (474)
.+++|+.|++++|+.-..
T Consensus 228 ~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp GSCTTEEEECCSSSCCHH
T ss_pred cCCCCCEEEeeCCcCCCc
Confidence 999999999999964443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=7.7e-16 Score=146.18 Aligned_cols=172 Identities=19% Similarity=0.352 Sum_probs=123.1
Q ss_pred cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEcc
Q 036075 48 MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLE 127 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~ 127 (474)
+++|++|++++|. +..++ .+..+++|+.|++++|.+..++. +..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~~~~------------------------l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP------------------------LANLKNLGWLFLD 98 (291)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG------------------------GTTCTTCCEEECC
T ss_pred cCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCCCcc------------------------cccCCCCCEEECC
Confidence 6777777777764 33443 36667777777777777665432 5667777777777
Q ss_pred CcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCC
Q 036075 128 GTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSS 207 (474)
Q Consensus 128 ~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 207 (474)
+|.+++++. ++.+++|++|++++|. +..+ ..+..+++|+.|++++|... .+ ..++.+++|+.|++++|....
T Consensus 99 ~n~l~~~~~-l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~--- 170 (291)
T 1h6t_A 99 ENKVKDLSS-LKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISD--- 170 (291)
T ss_dssp SSCCCCGGG-GTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC---
T ss_pred CCcCCCChh-hccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCcccc---
Confidence 777777654 7777888888887775 3444 34667788888888876543 33 457788888888888887543
Q ss_pred CCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCccc
Q 036075 208 SWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLP 277 (474)
Q Consensus 208 ~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp 277 (474)
++.+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+...|
T Consensus 171 ---------------------~~~l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 171 ---------------------IVPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ---------------------CGGGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred ---------------------chhhcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCcccCCc
Confidence 2226778899999999999875 55 4888999999999999877655
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=136.60 Aligned_cols=147 Identities=21% Similarity=0.258 Sum_probs=78.8
Q ss_pred EEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCch
Q 036075 30 LLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFS 109 (474)
Q Consensus 30 ~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~ 109 (474)
.++.++ ..+..+|..+ .++|++|++++|......+..+..+++|++|++++|.+..++..
T Consensus 11 ~v~c~~-~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 70 (208)
T 2o6s_A 11 TVECYS-QGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------------ 70 (208)
T ss_dssp EEECCS-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------------
T ss_pred EEEecC-CCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------------
Confidence 344444 3344555322 45677777777654333334456666677766666666655432
Q ss_pred hhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccC
Q 036075 110 EFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGK 188 (474)
Q Consensus 110 ~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~ 188 (474)
.+..+++|++|++++|.++.++.. ++.+++|++|++++|......+..+..+++|++|++++|......+..+..
T Consensus 71 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 71 ----VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ----hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 245566666666666666665543 456666666666665432222233455666666666665433222223444
Q ss_pred CCCCcEEecCCC
Q 036075 189 VESLEVLDLSGC 200 (474)
Q Consensus 189 l~~L~~L~l~~~ 200 (474)
+++|+.|++++|
T Consensus 147 l~~L~~L~l~~N 158 (208)
T 2o6s_A 147 LTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCccEEEecCC
Confidence 555555555544
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=7.2e-16 Score=144.09 Aligned_cols=168 Identities=21% Similarity=0.250 Sum_probs=134.2
Q ss_pred ccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEecc
Q 036075 71 SRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLR 150 (474)
Q Consensus 71 ~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~ 150 (474)
.+.++..++++++.+.+++. +..+++|++|+++++.++.++ .++.+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~------------------------~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~ 71 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS------------------------QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC------------------------HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccc------------------------hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECC
Confidence 35567777788877766552 567889999999999999988 68899999999999
Q ss_pred CCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCC
Q 036075 151 DCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFP 230 (474)
Q Consensus 151 ~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 230 (474)
+|. ++.++. +..+++|++|++++|. +..+|.... ++|+.|++++|.... ++
T Consensus 72 ~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~ 122 (263)
T 1xeu_A 72 HNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNNELRD------------------------TD 122 (263)
T ss_dssp SSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSSCCSB------------------------SG
T ss_pred CCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCCccCC------------------------Ch
Confidence 986 566666 8899999999999975 444554333 889999999987543 23
Q ss_pred CCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccHhhhcCCCcceeccccccc
Q 036075 231 SLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPASINRLFNLEKLELEDCKR 296 (474)
Q Consensus 231 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~c~~ 296 (474)
.+.++++|+.|++++|++.+ ++ .+..+++|++|++++|.+..+ ..+..+++|+.|++++++.
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred hhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 46788899999999999875 44 688889999999999998887 5788889999999998853
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=7.7e-18 Score=174.29 Aligned_cols=205 Identities=19% Similarity=0.126 Sum_probs=127.7
Q ss_pred cCCccEEEccCCcCCccchhhhcccCccceeeccCCC-ccccCccccccccCCccccccCCchhhHHHHhcCCcccEEE-
Q 036075 48 MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTD-IKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELH- 125 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~-l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~- 125 (474)
+++|+.|+|+++. ++.+|..++++++|+.|+++++. +..++.. +. ........|..++.+++|+.|+
T Consensus 348 ~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l--------l~--~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 348 DEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILL--------MR--ALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------HH--HHCTGGGHHHHHHHHHHHHHHCG
T ss_pred CccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHH--------HH--hcccccCCHHHHHHHHhcccCcc
Confidence 7788888888864 56788888888888888886653 1111110 00 0112234556666777777766
Q ss_pred ccCcCccccCC------cccC--CCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEec
Q 036075 126 LEGTAIRGLPV------SIEH--LTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDL 197 (474)
Q Consensus 126 L~~~~i~~l~~------~i~~--l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l 197 (474)
++.+.+..++. .+.. ...|+.|++++|. ++.+|. +..+++|+.|++++|.. ..+|..++.+++|+.|++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEEC
T ss_pred hhhcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEEC
Confidence 44443322211 0111 1247777777764 455665 77777777777777543 466777777777777777
Q ss_pred CCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCccc
Q 036075 198 SGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLP 277 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp 277 (474)
++|.... +|.++++++|+.|++++|++.....|..++.+++|+.|++++|.++.+|
T Consensus 494 s~N~l~~------------------------lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 494 SDNALEN------------------------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSCCCC------------------------CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCC------------------------CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7776442 3346667777777777777764212777777888888888888777555
Q ss_pred H----hhhcCCCcceec
Q 036075 278 A----SINRLFNLEKLE 290 (474)
Q Consensus 278 ~----~l~~l~~L~~L~ 290 (474)
. .+..+++|+.|+
T Consensus 550 ~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 550 GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCTTHHHHHCTTCSEEE
T ss_pred cHHHHHHHHCcccCccC
Confidence 3 234466777664
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=3.1e-15 Score=155.69 Aligned_cols=193 Identities=22% Similarity=0.334 Sum_probs=117.0
Q ss_pred CcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcccccc
Q 036075 26 KKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWP 105 (474)
Q Consensus 26 ~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~ 105 (474)
.++..+++... .+..+.....+++|+.|++++|. +..++ .+..+++|+.|+|++|.+..++.
T Consensus 21 ~~l~~l~l~~~-~i~~~~~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--------------- 82 (605)
T 1m9s_A 21 AETIKDNLKKK-SVTDAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--------------- 82 (605)
T ss_dssp HHHHHHHTTCS-CTTSEECHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG---------------
T ss_pred HHHHHHhccCC-CcccccchhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh---------------
Confidence 33444445442 22222222236666666666654 33343 35666667777776666654432
Q ss_pred CCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCC
Q 036075 106 FQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGN 185 (474)
Q Consensus 106 ~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~ 185 (474)
+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.... + ..
T Consensus 83 ---------l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~ 148 (605)
T 1m9s_A 83 ---------LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TV 148 (605)
T ss_dssp ---------GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC-C-GG
T ss_pred ---------hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC-c-hh
Confidence 456666777777777766655 46667777777777665 33333 36667777777777754332 3 45
Q ss_pred ccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCE
Q 036075 186 FGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKE 265 (474)
Q Consensus 186 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~ 265 (474)
+..+++|+.|++++|.... ++.+..+++|+.|+|++|.+.+ + ..+..+++|+.
T Consensus 149 l~~l~~L~~L~Ls~N~l~~------------------------~~~l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~ 201 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISD------------------------IVPLAGLTKLQNLYLSKNHISD--L-RALAGLKNLDV 201 (605)
T ss_dssp GGSCTTCSEEECCSSCCCC------------------------CGGGTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSE
T ss_pred hcccCCCCEEECcCCcCCC------------------------chhhccCCCCCEEECcCCCCCC--C-hHHccCCCCCE
Confidence 6677777777777776432 1125667778888888887764 3 35777788888
Q ss_pred EeCCCCCCCccc
Q 036075 266 LYLSKNSFITLP 277 (474)
Q Consensus 266 L~L~~~~l~~lp 277 (474)
|+|++|.+...|
T Consensus 202 L~L~~N~l~~~p 213 (605)
T 1m9s_A 202 LELFSQECLNKP 213 (605)
T ss_dssp EECCSEEEECCC
T ss_pred EEccCCcCcCCc
Confidence 888887766544
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.1e-15 Score=140.88 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=76.8
Q ss_pred hcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEE
Q 036075 116 TSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVL 195 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L 195 (474)
..+++|++|++++|.+++++. ++.+++|++|++++|. ++.+|.... ++|++|++++|.. ..++ .++.+++|+.|
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNNEL-RDTD-SLIHLKNLEIL 133 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSSCC-SBSG-GGTTCTTCCEE
T ss_pred hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCCcc-CCCh-hhcCcccccEE
Confidence 344555555555555555544 5555555555555543 333333222 5566666666432 2232 35666666777
Q ss_pred ecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc
Q 036075 196 DLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
++++|.... ++.+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+..
T Consensus 134 ~Ls~N~i~~------------------------~~~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 134 SIRNNKLKS------------------------IVMLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ECTTSCCCB------------------------CGGGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ECCCCcCCC------------------------ChHHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCCCcccC
Confidence 766665432 2235667788888888888864 2 567788889999998887765
Q ss_pred cc
Q 036075 276 LP 277 (474)
Q Consensus 276 lp 277 (474)
.|
T Consensus 187 ~~ 188 (263)
T 1xeu_A 187 EP 188 (263)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=7.9e-15 Score=131.95 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=115.3
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCcccCC-ccc-cCCccEEEccCCcCCccchhhhcccCccceeeccC
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPD-KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDG 82 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~ 82 (474)
+.++..++ .++++|..+ .++|++|++++|. +..++. .+. +++|++|++++|......+..+..+++|++|++++
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555553 556666544 4688999999875 445554 344 88999999998764433444578889999999999
Q ss_pred CCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCcc
Q 036075 83 TDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPST 161 (474)
Q Consensus 83 ~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~ 161 (474)
|.+..++.. .+.++++|++|++++|.++.++.. ++.+++|++|++++|......+..
T Consensus 86 n~l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 86 NQLQSLPNG----------------------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp SCCCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CcCCccCHh----------------------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 988876642 356788888888888888887654 678888888888887644333344
Q ss_pred CCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCC
Q 036075 162 IDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCK 201 (474)
Q Consensus 162 l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~ 201 (474)
+..+++|++|++++|... +.+++|+.|+++.+.
T Consensus 144 ~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINK 176 (208)
T ss_dssp TTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHH
T ss_pred hccCCCccEEEecCCCee-------cCCCCHHHHHHHHHh
Confidence 677888888888887433 345567777666554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=5.3e-14 Score=128.52 Aligned_cols=148 Identities=26% Similarity=0.374 Sum_probs=116.7
Q ss_pred ccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCC-CCccCCCCCcEEecCC
Q 036075 121 LLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMP-GNFGKVESLEVLDLSG 199 (474)
Q Consensus 121 L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L~l~~ 199 (474)
.+.++.+++.+..+|..+. ++|++|++++|......|..+..+++|++|++++|.. ..+| ..++.+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 4568888888888887664 8899999999876666677788899999999998765 4444 5568888999999998
Q ss_pred CCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-
Q 036075 200 CKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA- 278 (474)
Q Consensus 200 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~- 278 (474)
|.....+. ..+..+++|+.|++++|++. .+|..+..+++|++|++++|++..+|.
T Consensus 98 N~l~~l~~----------------------~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 98 NQLTVLPS----------------------AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp SCCCCCCT----------------------TTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CcCCccCh----------------------hHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 87543111 11577888999999999886 488888889999999999999888774
Q ss_pred hhhcCCCcceecccccc
Q 036075 279 SINRLFNLEKLELEDCK 295 (474)
Q Consensus 279 ~l~~l~~L~~L~l~~c~ 295 (474)
.+..+++|+.|++.+++
T Consensus 154 ~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEEeeCCC
Confidence 57788889998888874
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=3.5e-14 Score=129.74 Aligned_cols=152 Identities=25% Similarity=0.262 Sum_probs=122.2
Q ss_pred cccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccC
Q 036075 27 KIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPF 106 (474)
Q Consensus 27 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~ 106 (474)
.-+.++.++ ..++.+|..+ .++|++|+|++|......+..+..+++|++|+|++|.+..++..
T Consensus 20 s~~~v~c~~-~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~--------------- 82 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG--------------- 82 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------
T ss_pred eCCEeEccC-CCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh---------------
Confidence 355677776 5677888644 48899999999876666678888899999999999988877643
Q ss_pred CchhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCC
Q 036075 107 QFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGN 185 (474)
Q Consensus 107 ~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~ 185 (474)
.+..+++|++|++++|.++.++.. +..+++|++|++++|. +..+|..+..+++|++|++++|......+..
T Consensus 83 -------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 83 -------VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp -------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred -------hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 357788999999999999988654 6889999999999886 5688888889999999999997554443456
Q ss_pred ccCCCCCcEEecCCCCCC
Q 036075 186 FGKVESLEVLDLSGCKGP 203 (474)
Q Consensus 186 l~~l~~L~~L~l~~~~~~ 203 (474)
+..+++|+.|++.+|...
T Consensus 155 ~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECTTSCBC
T ss_pred HhCCCCCCEEEeeCCCcc
Confidence 888999999999998754
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=7.4e-17 Score=166.92 Aligned_cols=175 Identities=19% Similarity=0.192 Sum_probs=120.5
Q ss_pred CCccEEEecCccccccccccccccCcccEEecCCCC-------------CCcccCCccc-cCCccEEE-ccCCcCCccch
Q 036075 2 PNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCK-------------SLTTLPDKIC-MESLKILV-LSGCRKFKNFR 66 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~-------------~l~~lp~~~~-l~~L~~L~-L~~c~~l~~~~ 66 (474)
++|+.|+|+++ .++.+|..++++++|+.|+++++. ..+..|..+. +++|+.|+ ++.+ .+..++
T Consensus 349 ~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLR 426 (567)
T ss_dssp TTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHH
T ss_pred ccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhh
Confidence 56666777764 456777777777777777775543 2223333333 55555555 2322 111111
Q ss_pred h------hhcc--cCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcc
Q 036075 67 E------IVGS--RKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSI 138 (474)
Q Consensus 67 ~------~~~~--l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i 138 (474)
. .+.. ...|+.|++++|.+..+| . ++.+++|+.|++++|.++.+|..+
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-----------------------~-~~~l~~L~~L~Ls~N~l~~lp~~~ 482 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLC-----------------------H-LEQLLLVTHLDLSHNRLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-----------------------C-GGGGTTCCEEECCSSCCCCCCGGG
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCc-----------------------C-ccccccCcEeecCcccccccchhh
Confidence 1 0111 123556666666555444 3 788899999999999999999999
Q ss_pred cCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccC-CCCccCCCCCcEEecCCCCCCC
Q 036075 139 EHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSM-PGNFGKVESLEVLDLSGCKGPP 204 (474)
Q Consensus 139 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~-~~~l~~l~~L~~L~l~~~~~~~ 204 (474)
+.+++|+.|++++|. ++.+| .+..+++|+.|++++|...... |..++.+++|+.|++++|....
T Consensus 483 ~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 483 AALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999999999986 55677 7899999999999997655544 8889999999999999987543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=6.3e-14 Score=127.21 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=111.1
Q ss_pred cEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCC
Q 036075 122 LELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCK 201 (474)
Q Consensus 122 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~ 201 (474)
+.+++++++++++|..+. ++|+.|++++|......+..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 457788888888887654 678888888876433334467788888888888876666667778888888888888887
Q ss_pred CCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-hh
Q 036075 202 GPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA-SI 280 (474)
Q Consensus 202 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l 280 (474)
....+. ..+.++++|+.|++++|.+.. ..+..+..+++|++|+|++|+++.++. .+
T Consensus 92 l~~l~~----------------------~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPK----------------------SLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCT----------------------TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCccCH----------------------hHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 553111 115678888888888888863 346678888889999999998887765 47
Q ss_pred hcCCCcceecccccc
Q 036075 281 NRLFNLEKLELEDCK 295 (474)
Q Consensus 281 ~~l~~L~~L~l~~c~ 295 (474)
..+++|++|++++++
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 778888888888764
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=5.9e-14 Score=127.37 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=115.4
Q ss_pred cEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCc
Q 036075 29 ILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQF 108 (474)
Q Consensus 29 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~ 108 (474)
+.+++++ ..++.+|..+ .++|++|++++|......+..+..+++|++|+|++|.+..++.
T Consensus 14 ~~v~c~~-~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~------------------ 73 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP------------------ 73 (220)
T ss_dssp TEEECTT-SCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT------------------
T ss_pred CEEEcCC-CCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH------------------
Confidence 4566666 4567777644 3678888888876544444577888888888888888876532
Q ss_pred hhhHHHHhcCCcccEEEccCcCccccCCc-ccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCcc
Q 036075 109 SEFSEIMTSMEHLLELHLEGTAIRGLPVS-IEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFG 187 (474)
Q Consensus 109 ~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~ 187 (474)
..+.++++|++|++++|.++.+|.. +..+++|++|++++|......|..+..+++|+.|++++|......+..+.
T Consensus 74 ----~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 74 ----DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp ----TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ----HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 2467788899999999988888765 57889999999998876555677788899999999998766555556688
Q ss_pred CCCCCcEEecCCCCCC
Q 036075 188 KVESLEVLDLSGCKGP 203 (474)
Q Consensus 188 ~l~~L~~L~l~~~~~~ 203 (474)
.+++|+.|++++|...
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 8999999999988743
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=9.4e-14 Score=135.97 Aligned_cols=171 Identities=22% Similarity=0.197 Sum_probs=130.1
Q ss_pred ceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCc-cc-CCCCCcEEeccCCc
Q 036075 76 SELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS-IE-HLTGLVLLNLRDCK 153 (474)
Q Consensus 76 ~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~-~l~~L~~L~L~~c~ 153 (474)
+.++++++.+..+|.. + .+.++.|+|++|.+++++.. +. .+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-----------------------~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~ 75 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-----------------------L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75 (361)
T ss_dssp TEEECCSSCCSSCCSS-----------------------C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-----------------------C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc
Confidence 5677788877777753 1 24588999999999998654 55 89999999999987
Q ss_pred CCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCC
Q 036075 154 NLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLS 233 (474)
Q Consensus 154 ~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 233 (474)
.....+..+..+++|++|++++|......+..+..+++|+.|++++|.+... ....+.
T Consensus 76 i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~----------------------~~~~~~ 133 (361)
T 2xot_A 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV----------------------DRNAFE 133 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTT
T ss_pred CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE----------------------CHHHhC
Confidence 5444446688999999999999775554455688899999999999876531 111277
Q ss_pred CCCcccEEEccCCCCCCCCccccc----cCCCCCCEEeCCCCCCCcccH-hhhcCCC--cceecccccc
Q 036075 234 GLCSLRKLDLSDSNLGEGAIPNDI----GNLCSLKELYLSKNSFITLPA-SINRLFN--LEKLELEDCK 295 (474)
Q Consensus 234 ~l~~L~~L~l~~~~l~~~~~~~~l----~~l~~L~~L~L~~~~l~~lp~-~l~~l~~--L~~L~l~~c~ 295 (474)
++++|+.|+|++|++.. +|..+ ..+++|+.|+|++|+++.+|. .+..++. |+.|++++++
T Consensus 134 ~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 88999999999999865 66554 568999999999999998874 6777776 4788888764
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=125.62 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=117.3
Q ss_pred cEEecCCCCCCcccCCccccCCccEEEccCCcCCccch-hhhcccCccceeeccCCCccccCccccccccCCccccccCC
Q 036075 29 ILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFR-EIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQ 107 (474)
Q Consensus 29 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~ 107 (474)
+.++++++ .++.+|..+ ...+++|++++|......+ ..+..+++|+.|++++|.+..++..
T Consensus 14 ~~l~~s~n-~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------- 75 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------------- 75 (220)
T ss_dssp TEEECCSS-CCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT----------------
T ss_pred CEeEeCCC-CcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH----------------
Confidence 47778774 466777643 4567888888876444333 4578888899999999888876642
Q ss_pred chhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCc
Q 036075 108 FSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNF 186 (474)
Q Consensus 108 ~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l 186 (474)
.+.++++|++|++++|.++.++. .++.+++|++|++++|......|..+..+++|++|++++|......|..+
T Consensus 76 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 76 ------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred ------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 46778889999999999988765 48889999999999987666667788889999999999977666667888
Q ss_pred cCCCCCcEEecCCCCCC
Q 036075 187 GKVESLEVLDLSGCKGP 203 (474)
Q Consensus 187 ~~l~~L~~L~l~~~~~~ 203 (474)
..+++|+.|++++|...
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 89999999999988744
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=1.7e-13 Score=124.40 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=123.1
Q ss_pred cEEEecCccccccccccccccCcccEEecCCCCCCccc-CC-ccc-cCCccEEEccCCcCCccchhhhcccCccceeecc
Q 036075 5 EELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTL-PD-KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLD 81 (474)
Q Consensus 5 ~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~ 81 (474)
+.++++++ .++++|..+. +.+++|+|++|. ++.+ |. .+. +++|++|+|++|......+..+.++++|++|+++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888885 6778887654 457899999975 4555 43 344 9999999999987555555689999999999999
Q ss_pred CCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCc
Q 036075 82 GTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPS 160 (474)
Q Consensus 82 ~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~ 160 (474)
+|.+..++. ..+.++++|++|++++|.++.+ |..+..+++|++|++++|......|.
T Consensus 90 ~N~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 90 SNRLENVQH----------------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp SSCCCCCCG----------------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CCccCccCH----------------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 999987764 3478899999999999999997 67799999999999999976666688
Q ss_pred cCCCCCCCCEEeccCCCCC
Q 036075 161 TIDGLKSLRNLYLSGCSKL 179 (474)
Q Consensus 161 ~l~~L~~L~~L~l~~c~~l 179 (474)
.+..+++|+.|++++|...
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 8999999999999998654
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=7.7e-14 Score=120.92 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=93.9
Q ss_pred ccCcccEEecCCCCCC-cccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcc
Q 036075 24 LHKKIILLNLKDCKSL-TTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFE 101 (474)
Q Consensus 24 ~l~~L~~L~L~~c~~l-~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~ 101 (474)
..++|+.|++++|... ..+|..+. +++|++|++++|. +..+ ..+..+++|++|++++|.+...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~------------- 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGG------------- 86 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSC-------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchH-------------
Confidence 4477888888887643 36777655 7888888888876 4444 6677788888888888877652
Q ss_pred ccccCCchhhHHHHhcCCcccEEEccCcCccccC--CcccCCCCCcEEeccCCcCCCccCc----cCCCCCCCCEEeccC
Q 036075 102 SFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLP--VSIEHLTGLVLLNLRDCKNLETLPS----TIDGLKSLRNLYLSG 175 (474)
Q Consensus 102 ~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~--~~i~~l~~L~~L~L~~c~~l~~lp~----~l~~L~~L~~L~l~~ 175 (474)
+|..+..+++|++|++++|.++.++ ..++.+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 87 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 87 ---------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ---------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ---------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 2244666888888888888888765 567888888888888875 444454 677888888888888
Q ss_pred CCC
Q 036075 176 CSK 178 (474)
Q Consensus 176 c~~ 178 (474)
|..
T Consensus 157 n~~ 159 (168)
T 2ell_A 157 RED 159 (168)
T ss_dssp TTS
T ss_pred CCh
Confidence 654
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=8.4e-14 Score=136.33 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=23.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+.+..+.|.|+|++.|..+.........|.
T Consensus 303 L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 336 (361)
T 2xot_A 303 LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336 (361)
T ss_dssp EEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence 4445667778888899988887766655555553
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.4e-14 Score=154.48 Aligned_cols=115 Identities=22% Similarity=0.370 Sum_probs=82.4
Q ss_pred cchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCC
Q 036075 64 NFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTG 143 (474)
Q Consensus 64 ~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~ 143 (474)
..+..+..++.|+.|+|++|.+..+|.. +..+++|++|+|++|.++.+|..++.+++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----------------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 271 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISAN-----------------------IFKYDFLTRLYLNGNSLTELPAEIKNLSN 271 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGG-----------------------GGGCCSCSCCBCTTSCCSCCCGGGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChh-----------------------hcCCCCCCEEEeeCCcCcccChhhhCCCC
Confidence 3456677778888888888877766643 45677788888888888878877888888
Q ss_pred CcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCC
Q 036075 144 LVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGP 203 (474)
Q Consensus 144 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~ 203 (474)
|++|+|++|. ++.+|..+..+++|++|+|++|. +..+|..++.+++|+.|++++|...
T Consensus 272 L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 272 LRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 8888888876 44777778888888888888764 4577777888888888888887754
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1e-13 Score=120.07 Aligned_cols=132 Identities=22% Similarity=0.184 Sum_probs=88.8
Q ss_pred hcCCcccEEEccCcCcc--ccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCc
Q 036075 116 TSMEHLLELHLEGTAIR--GLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLE 193 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~--~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~ 193 (474)
...++|++|++++|.+. .+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE------ 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh------
Confidence 34577888888888887 677777778888888888776 4444 5566666777777766554333333332
Q ss_pred EEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCC
Q 036075 194 VLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSF 273 (474)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l 273 (474)
.+++|+.|++++|.+.+...+..+..+++|++|++++|.+
T Consensus 93 ----------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 93 ----------------------------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp ----------------------------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred ----------------------------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 3556666666666665422225677778888888888887
Q ss_pred CcccH----hhhcCCCcceecccccc
Q 036075 274 ITLPA----SINRLFNLEKLELEDCK 295 (474)
Q Consensus 274 ~~lp~----~l~~l~~L~~L~l~~c~ 295 (474)
..+|. .+..+++|++|++++|.
T Consensus 133 ~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 133 TNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cchHHHHHHHHHhCccCcEecCCCCC
Confidence 77765 67778888888888874
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.8e-13 Score=115.99 Aligned_cols=124 Identities=20% Similarity=0.231 Sum_probs=67.1
Q ss_pred CcccEEecCCCCCC-cccCCccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCcccc
Q 036075 26 KKIILLNLKDCKSL-TTLPDKIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESF 103 (474)
Q Consensus 26 ~~L~~L~L~~c~~l-~~lp~~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l 103 (474)
++|+.|++++|... +.+|..+. +++|++|++++|.. ..+ ..++++++|++|++++|.+...
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~--------------- 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGG--------------- 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSC---------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccch---------------
Confidence 55556666655433 24555444 56666666665532 222 4455556666666666655431
Q ss_pred ccCCchhhHHHHhcCCcccEEEccCcCccccC--CcccCCCCCcEEeccCCcCCCccCc----cCCCCCCCCEEecc
Q 036075 104 WPFQFSEFSEIMTSMEHLLELHLEGTAIRGLP--VSIEHLTGLVLLNLRDCKNLETLPS----TIDGLKSLRNLYLS 174 (474)
Q Consensus 104 ~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~--~~i~~l~~L~~L~L~~c~~l~~lp~----~l~~L~~L~~L~l~ 174 (474)
+|..+..+++|++|++++|.+++++ ..++.+++|++|++++|. ++.+|. .+..+++|+.|+++
T Consensus 80 -------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 -------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 2334455666666666666666543 456666666666666654 333333 45556666666654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=5.7e-13 Score=112.92 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCcccEEEccCcCcc--ccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEE
Q 036075 118 MEHLLELHLEGTAIR--GLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVL 195 (474)
Q Consensus 118 l~~L~~L~L~~~~i~--~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L 195 (474)
.++|+.|+++++.+. .+|..++.+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~---------- 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVL---------- 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHH----------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHH----------
Confidence 456777777777776 566666666666666666654 3333 34455555555555554332222222
Q ss_pred ecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCc
Q 036075 196 DLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFIT 275 (474)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~ 275 (474)
+.++++|+.|++++|.+.+...+..++.+++|++|++++|.++.
T Consensus 84 ------------------------------------~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 84 ------------------------------------AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ------------------------------------HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ------------------------------------hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 23456777777777777542233678888999999999998887
Q ss_pred ccH----hhhcCCCcceecccc
Q 036075 276 LPA----SINRLFNLEKLELED 293 (474)
Q Consensus 276 lp~----~l~~l~~L~~L~l~~ 293 (474)
+|. .+..+++|+.|++++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 765 688899999998764
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.2e-12 Score=114.31 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=74.0
Q ss_pred cccccCcccEEecCCCCCCcccCCcccc-CCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCC
Q 036075 21 TLLLHKKIILLNLKDCKSLTTLPDKICM-ESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSN 99 (474)
Q Consensus 21 ~~~~l~~L~~L~L~~c~~l~~lp~~~~l-~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~ 99 (474)
.+..+.+|+.|++++| .++.+|....+ ++|++|++++|.. ..+ ..+..+++|++|++++|.+..+|..
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l-~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~-------- 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEI-RKL-DGFPLLRRLKTLLVNNNRICRIGEG-------- 82 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCC-CEE-CCCCCCSSCCEEECCSSCCCEECSC--------
T ss_pred hcCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCC-Ccc-cccccCCCCCEEECCCCcccccCcc--------
Confidence 3455667777777775 34455554443 3777777777643 333 4556666666666666666655432
Q ss_pred ccccccCCchhhHHHHhcCCcccEEEccCcCccccCC--cccCCCCCcEEeccCCcCCCccCcc----CCCCCCCCEEec
Q 036075 100 FESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV--SIEHLTGLVLLNLRDCKNLETLPST----IDGLKSLRNLYL 173 (474)
Q Consensus 100 L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~--~i~~l~~L~~L~L~~c~~l~~lp~~----l~~L~~L~~L~l 173 (474)
.+..+++|++|++++|.+..+|. .++.+++|+.|++++|. +..+|.. +..+++|+.|++
T Consensus 83 --------------~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 83 --------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp --------------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred --------------hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence 23556666666666666666554 45556666666666554 2334432 445555555555
Q ss_pred cCC
Q 036075 174 SGC 176 (474)
Q Consensus 174 ~~c 176 (474)
+++
T Consensus 148 ~~n 150 (176)
T 1a9n_A 148 QKV 150 (176)
T ss_dssp EEC
T ss_pred CcC
Confidence 544
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=7.4e-13 Score=141.14 Aligned_cols=88 Identities=24% Similarity=0.233 Sum_probs=52.1
Q ss_pred HHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCC
Q 036075 112 SEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVES 191 (474)
Q Consensus 112 ~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~ 191 (474)
+..+..+++|+.|+|++|.+..+|..+..+++|++|+|++|. ++.+|..+..+++|+.|+|++|.. ..+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCC
Confidence 445666667777777777766666666666667777776664 336666666666666666666543 355655555555
Q ss_pred CcEEecCCCC
Q 036075 192 LEVLDLSGCK 201 (474)
Q Consensus 192 L~~L~l~~~~ 201 (474)
|++|++++|.
T Consensus 295 L~~L~L~~N~ 304 (727)
T 4b8c_D 295 LKYFYFFDNM 304 (727)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCC
Confidence 5555555544
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=6.1e-12 Score=111.43 Aligned_cols=89 Identities=27% Similarity=0.368 Sum_probs=52.4
Q ss_pred HhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCc
Q 036075 115 MTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLE 193 (474)
Q Consensus 115 l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~ 193 (474)
+..+++|++|++++|.++++ |..++.+++|++|++++|......+..+..+++|++|++++|......|..++.+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 34455555556655555554 44566666666666666554333344455666666666666655555566666667777
Q ss_pred EEecCCCCCC
Q 036075 194 VLDLSGCKGP 203 (474)
Q Consensus 194 ~L~l~~~~~~ 203 (474)
.|++++|...
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 7777766543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=3.3e-12 Score=111.49 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=104.3
Q ss_pred CCCccEEEecCccccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccch-hhhcccCccceee
Q 036075 1 MPNFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFR-EIVGSRKCLSELL 79 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~ 79 (474)
+++|++|++++| .+..++......++|++|++++|. ++.++....+++|++|++++|.. ..+| ..+..+++|++|+
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEE
Confidence 468999999998 566775533334599999999975 55565444499999999999864 4555 4558999999999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCc----ccCCCCCcEEeccCCcC
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVS----IEHLTGLVLLNLRDCKN 154 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~----i~~l~~L~~L~L~~c~~ 154 (474)
+++|.+..+|.. ..+..+++|+.|++++|.+..+|.. ++.+++|+.|++++|..
T Consensus 95 L~~N~i~~~~~~---------------------~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDL---------------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGG---------------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhh---------------------HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999876641 1467899999999999999999885 89999999999998753
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=2.4e-11 Score=107.57 Aligned_cols=127 Identities=25% Similarity=0.319 Sum_probs=93.0
Q ss_pred cEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCc--cCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCC
Q 036075 122 LELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPS--TIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSG 199 (474)
Q Consensus 122 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~--~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~ 199 (474)
+.+++++++++++|..+.. +|+.|++++|. ++.++. .+..+++|++|++++|......|..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6789999999988886654 88999999886 455543 377888899999988776666677788888888888888
Q ss_pred CCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCC
Q 036075 200 CKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 200 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~ 274 (474)
|.....+ ...+.++++|++|++++|++.. ..|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~----------------------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEIS----------------------NKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEEC----------------------SSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccC----------------------HHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCcc
Confidence 7654211 1125667778888888887753 34666777778888888887765
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=4.1e-11 Score=106.18 Aligned_cols=87 Identities=30% Similarity=0.361 Sum_probs=43.7
Q ss_pred HhcCCcccEEEccCcCccccC-CcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCc
Q 036075 115 MTSMEHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLE 193 (474)
Q Consensus 115 l~~l~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~ 193 (474)
+.++++|++|++++|.|+.++ ..+.++++|++|++++|......|..+..+++|++|++++|......+..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 344444455555555555443 2355555555555555543333333455555666666655443322223455566666
Q ss_pred EEecCCCC
Q 036075 194 VLDLSGCK 201 (474)
Q Consensus 194 ~L~l~~~~ 201 (474)
.|++++|.
T Consensus 130 ~L~L~~N~ 137 (193)
T 2wfh_A 130 HLAIGANP 137 (193)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 66666655
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=6e-11 Score=105.08 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=79.2
Q ss_pred ceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCCCCcEEeccCCcCC
Q 036075 76 SELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNL 155 (474)
Q Consensus 76 ~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l 155 (474)
+.++++++.+.++|.. + .++|++|++++|.++.+|..+.++++|++|++++|...
T Consensus 13 ~~l~~~~~~l~~ip~~-----------------------~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~ 67 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-----------------------I--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS 67 (193)
T ss_dssp TEEECTTSCCSSCCSC-----------------------C--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-----------------------C--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC
Confidence 4677777777777643 1 24788899999999888888888999999999888755
Q ss_pred CccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCC
Q 036075 156 ETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGP 203 (474)
Q Consensus 156 ~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~ 203 (474)
...+..+.++++|++|++++|......+..+..+++|+.|++++|...
T Consensus 68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 555566888888999999887665555566788888888888887654
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=1.3e-11 Score=119.11 Aligned_cols=60 Identities=18% Similarity=0.074 Sum_probs=35.5
Q ss_pred CCCCCcccEEEccCCCCCCCCccccccCCCCCC-EEeCCCCCCCccc-HhhhcCCCcceeccccc
Q 036075 232 LSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLK-ELYLSKNSFITLP-ASINRLFNLEKLELEDC 294 (474)
Q Consensus 232 l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~-~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~c 294 (474)
|.++.+|+++++.++ +.. --+.++..+++|+ .+++.+ +++.++ ..+.+|++|+.+++.+.
T Consensus 246 F~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred hhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 566666777777665 321 1123456666676 777766 555554 45666777777766543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=5.6e-14 Score=125.32 Aligned_cols=125 Identities=23% Similarity=0.325 Sum_probs=77.5
Q ss_pred ccc-cCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccE
Q 036075 45 KIC-MESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLE 123 (474)
Q Consensus 45 ~~~-l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~ 123 (474)
.+. +++|++|++++|. +..+| .+.++++|+.|++++|.+..+|. .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-----------------------~~~~~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIEN-----------------------LDAVADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSS-----------------------HHHHHHHCSE
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccc-----------------------hhhcCCcCCE
Confidence 444 6677777776654 33355 56666777777777766665543 2445566777
Q ss_pred EEccCcCccccCCcccCCCCCcEEeccCCcCCCccC--ccCCCCCCCCEEeccCCCCCccCCCC----------ccCCCC
Q 036075 124 LHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLP--STIDGLKSLRNLYLSGCSKLKSMPGN----------FGKVES 191 (474)
Q Consensus 124 L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~L~~L~~L~l~~c~~l~~~~~~----------l~~l~~ 191 (474)
|++++|.++.+| .++.+++|++|++++|. +..++ ..+..+++|++|++++|......|.. +..+++
T Consensus 98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 98 LWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp EEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred EECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 777777777665 46667777777777665 33333 24666777777777776544433332 566777
Q ss_pred CcEEe
Q 036075 192 LEVLD 196 (474)
Q Consensus 192 L~~L~ 196 (474)
|+.|+
T Consensus 176 L~~Ld 180 (198)
T 1ds9_A 176 LKKLD 180 (198)
T ss_dssp CSEEC
T ss_pred cEEEC
Confidence 77776
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=7e-11 Score=103.04 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=27.8
Q ss_pred cEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccC
Q 036075 29 ILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELP 89 (474)
Q Consensus 29 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~ 89 (474)
+.++++++ .+..+|..+ .++|++|++++|......+..+..+++|++|++++|.+..++
T Consensus 10 ~~l~~~~~-~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TEEECCSS-CCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CEEEecCC-CCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 44555552 344455322 355666666665432222233455555555555555544433
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.7e-10 Score=100.60 Aligned_cols=128 Identities=24% Similarity=0.326 Sum_probs=76.5
Q ss_pred ccEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCC
Q 036075 121 LLELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGC 200 (474)
Q Consensus 121 L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~ 200 (474)
.+.+++++++++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..++.+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4568888888888876543 67888888887643333334567788888888876543333334566666666666666
Q ss_pred CCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCcccc-ccCCCCCCEEeCCCCCCC
Q 036075 201 KGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPND-IGNLCSLKELYLSKNSFI 274 (474)
Q Consensus 201 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~-l~~l~~L~~L~L~~~~l~ 274 (474)
.....+. ..+..+++|+.|++++|.+.. +|.. +..+++|++|++++|.+.
T Consensus 87 ~l~~~~~----------------------~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPN----------------------GVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCT----------------------TTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCH----------------------HHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCee
Confidence 5432110 014455666666666666542 3332 355666666666666554
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=2.8e-10 Score=109.66 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=70.4
Q ss_pred hcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCccCc-cCCCCCCCC-EEeccCCCCCccC-CCCccCCCC
Q 036075 116 TSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETLPS-TIDGLKSLR-NLYLSGCSKLKSM-PGNFGKVES 191 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~-~L~l~~c~~l~~~-~~~l~~l~~ 191 (474)
..+++|+.+++++|.++.+|. .+.++++|+.+++.++ ++.++. .+.++++|+ .+++.+ .+..+ +..+..+++
T Consensus 223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 358999999999999999976 5999999999999986 666664 578999999 999987 34444 477899999
Q ss_pred CcEEecCCCCCCC
Q 036075 192 LEVLDLSGCKGPP 204 (474)
Q Consensus 192 L~~L~l~~~~~~~ 204 (474)
|+.+++.++....
T Consensus 299 L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 299 LRYVLATGDKITT 311 (329)
T ss_dssp EEEEEECSSCCCE
T ss_pred CCEEEeCCCccCc
Confidence 9999998876543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=2.5e-13 Score=121.09 Aligned_cols=143 Identities=21% Similarity=0.233 Sum_probs=112.2
Q ss_pred ccEEEecCcc-ccccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccC
Q 036075 4 FEELDLGGCT-RLREIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDG 82 (474)
Q Consensus 4 L~~L~L~~c~-~l~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~ 82 (474)
|+.+.+.+.. .++.+|..+..+++|++|++++|. +..+|....+++|++|++++|. +..+|..+..+++|+.|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence 4455555431 344555689999999999999974 5668833339999999999986 457888888889999999999
Q ss_pred CCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC--cccCCCCCcEEeccCCcCCCccCc
Q 036075 83 TDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV--SIEHLTGLVLLNLRDCKNLETLPS 160 (474)
Q Consensus 83 ~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~--~i~~l~~L~~L~L~~c~~l~~lp~ 160 (474)
|.+..+| .+..+++|++|++++|.++.++. .+..+++|++|++++|......|.
T Consensus 103 N~l~~l~------------------------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 103 NQIASLS------------------------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EECCCHH------------------------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCcCC------------------------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9887543 36788999999999999998764 688999999999999875444443
Q ss_pred ----------cCCCCCCCCEEe
Q 036075 161 ----------TIDGLKSLRNLY 172 (474)
Q Consensus 161 ----------~l~~L~~L~~L~ 172 (474)
.+..+++|+.|+
T Consensus 159 ~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 159 NNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccchHHHHHHHHHhCCCcEEEC
Confidence 267889999997
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=1.8e-08 Score=99.50 Aligned_cols=35 Identities=26% Similarity=0.179 Sum_probs=14.8
Q ss_pred hcCCcccEEEccCcCccccCCcccCCCCCcEEecc
Q 036075 116 TSMEHLLELHLEGTAIRGLPVSIEHLTGLVLLNLR 150 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~ 150 (474)
.+|.+|+.+++.++.++.++...-.+.+|+.+.+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 34444444444444444443332223444444443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=9.6e-10 Score=95.52 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=30.8
Q ss_pred cEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccC
Q 036075 29 ILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELP 89 (474)
Q Consensus 29 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~ 89 (474)
+.++++++ .++++|..+ .++|++|+|++|......|..+.++++|++|+|++|.+..+|
T Consensus 15 ~~l~~~~n-~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SEEECCSS-CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cEEEeCCC-CCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC
Confidence 45566553 345555533 255666666665433333445555555555555555555444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.6e-09 Score=93.78 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=29.9
Q ss_pred ccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhcccCccceeeccCCCccccC
Q 036075 28 IILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVGSRKCLSELLLDGTDIKELP 89 (474)
Q Consensus 28 L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~~~l~~l~ 89 (474)
.+.++++++ .++.+|..+ .++|++|+|++|......|..+.++++|++|+|++|.+..++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 70 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEEEeCCC-CcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC
Confidence 345555552 344555433 355555666555433333444555555555555555554443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=8.5e-11 Score=115.09 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=91.2
Q ss_pred cCcccEEecCCCCCCcc----cCCccc--cCCccEEEccCCcCCcc-chhhhcccCccceeeccCCCccccCcccccccc
Q 036075 25 HKKIILLNLKDCKSLTT----LPDKIC--MESLKILVLSGCRKFKN-FREIVGSRKCLSELLLDGTDIKELPKHKRSKIS 97 (474)
Q Consensus 25 l~~L~~L~L~~c~~l~~----lp~~~~--l~~L~~L~L~~c~~l~~-~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~ 97 (474)
.++|+.|+|++|..-.. +...+. .++|++|+|++|..... .......+++|+.|+|++|.+.+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~------- 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC------- 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-------
Confidence 35677777777653221 111111 25777777777654332 22233345667777777776653211
Q ss_pred CCccccccCCchhhHHHH-hcCCcccEEEccCcCccc-----cCCcccCCCCCcEEeccCCcCCC----ccCccCCCCCC
Q 036075 98 SNFESFWPFQFSEFSEIM-TSMEHLLELHLEGTAIRG-----LPVSIEHLTGLVLLNLRDCKNLE----TLPSTIDGLKS 167 (474)
Q Consensus 98 ~~L~~l~~~~~~~l~~~l-~~l~~L~~L~L~~~~i~~-----l~~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~L~~ 167 (474)
..+...+ ...++|++|+|++|.+.+ ++..+..+++|++|+|++|.... .++..+...++
T Consensus 144 -----------~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 144 -----------KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp -----------HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred -----------HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 1222333 245677777777777654 44445667777777777765321 23444556667
Q ss_pred CCEEeccCCCCCc----cCCCCccCCCCCcEEecCCCCCC
Q 036075 168 LRNLYLSGCSKLK----SMPGNFGKVESLEVLDLSGCKGP 203 (474)
Q Consensus 168 L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~~~ 203 (474)
|++|++++|.... .+...+...++|++|++++|.+.
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 8888887775432 22233445677888888888654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=5.2e-09 Score=90.81 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=65.3
Q ss_pred cEEEccCcCccccCCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCC
Q 036075 122 LELHLEGTAIRGLPVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCK 201 (474)
Q Consensus 122 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~ 201 (474)
+.++++++.++++|..+. ++|+.|++++|......|..+..+++|++|++++|. +..+|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~---------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTG---------------- 75 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT----------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChh----------------
Confidence 457777777777776553 666666666665433334455555666666665542 2222221
Q ss_pred CCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccc-cccCCCCCCEEeCCCCCCCcccH
Q 036075 202 GPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPN-DIGNLCSLKELYLSKNSFITLPA 278 (474)
Q Consensus 202 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~l~~L~~L~L~~~~l~~lp~ 278 (474)
.+.++++|+.|++++|++.. +|. .+..+++|++|++++|.+...+.
T Consensus 76 -----------------------------~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 76 -----------------------------VFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp -----------------------------TTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred -----------------------------HhCCcchhhEEECCCCccce--eCHHHhccccCCCEEEeCCCCcccccc
Confidence 13556667777777777653 444 37778888888888888775554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=3.9e-09 Score=91.24 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=84.3
Q ss_pred cceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCc
Q 036075 75 LSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCK 153 (474)
Q Consensus 75 L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~ 153 (474)
.+.++++++.+.++|.. + .++|++|++++|.|+++ |..++.+++|++|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~-----------------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-----------------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSC-----------------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCcc-----------------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 56788888888887753 1 36899999999999998 5679999999999999987
Q ss_pred CCCccCc-cCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCC
Q 036075 154 NLETLPS-TIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGP 203 (474)
Q Consensus 154 ~l~~lp~-~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~ 203 (474)
++.+|. .+..+++|++|++++|......+..++.+++|+.|++++|...
T Consensus 66 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 66 -LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 455555 4689999999999997654444456899999999999999754
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=4e-08 Score=97.03 Aligned_cols=236 Identities=14% Similarity=0.185 Sum_probs=158.6
Q ss_pred CccEEEecCccccccccc-cccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccch-hhhcccCccceee
Q 036075 3 NFEELDLGGCTRLREIHP-TLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFR-EIVGSRKCLSELL 79 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~-~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~ 79 (474)
.++++.+-. .++.++. .+.+ .+|+.+.+.++ ++.++.... -.+|+.+.+.. .+..++ ..|.+|++|+.++
T Consensus 114 ~l~~i~ip~--~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 114 GYNEIILPN--SVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SCSEEECCT--TCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred CccEEEECC--ccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 455555543 4555553 3445 47999999874 777765433 45799999986 455554 5789999999999
Q ss_pred ccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCC-cccCCCCCcEEeccCCcCCCcc
Q 036075 80 LDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPV-SIEHLTGLVLLNLRDCKNLETL 158 (474)
Q Consensus 80 L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~c~~l~~l 158 (474)
+.++.+..++.. ...+.+|+.+.+.. .++.++. .+.++++|+.+++..+ ++.+
T Consensus 187 l~~n~l~~I~~~-----------------------aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I 240 (401)
T 4fdw_A 187 LSKTKITKLPAS-----------------------TFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTI 240 (401)
T ss_dssp CTTSCCSEECTT-----------------------TTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEE
T ss_pred cCCCcceEechh-----------------------hEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCc
Confidence 999998888764 22257788888874 3666644 5788888999988763 5666
Q ss_pred CccCCCCCCCCEEeccCCCCCccC-CCCccCCCCCcEEecCCCCCCCCCCCCchhhHHHhhhccCCCCccCCCCCCCCCc
Q 036075 159 PSTIDGLKSLRNLYLSGCSKLKSM-PGNFGKVESLEVLDLSGCKGPPLSSSWYLPFLISLMRRCSDPMALGFPSLSGLCS 237 (474)
Q Consensus 159 p~~l~~L~~L~~L~l~~c~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~l~~ 237 (474)
+.....-.+|+.+.+.. .+..+ ...+..+++|+.+.+.++...... .....-..|.+|++
T Consensus 241 ~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~-----------------~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 241 GQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDP-----------------EAMIHPYCLEGCPK 301 (401)
T ss_dssp CTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCT-----------------TCEECTTTTTTCTT
T ss_pred cccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCc-----------------ccEECHHHhhCCcc
Confidence 65443337888888853 23333 456788889999988776532100 00011122788889
Q ss_pred ccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCccc-HhhhcCCCcceeccccc
Q 036075 238 LRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLP-ASINRLFNLEKLELEDC 294 (474)
Q Consensus 238 L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~c 294 (474)
|+.+.+..+ +.. --..++..+++|+.+.|..+ ++.+. ..+.++ +|+.+++.++
T Consensus 302 L~~l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 302 LARFEIPES-IRI-LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCEECCCTT-CCE-ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCeEEeCCc-eEE-EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 999988843 432 12346777889999999554 66554 467788 8999999886
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=1.3e-07 Score=93.19 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=83.5
Q ss_pred cccc-ccccccCcccEEecCCCCCCcccCCcc-c-cCCccEEEccCCcCCccch-hhhcccCccceeeccCCCccccCcc
Q 036075 16 REIH-PTLLLHKKIILLNLKDCKSLTTLPDKI-C-MESLKILVLSGCRKFKNFR-EIVGSRKCLSELLLDGTDIKELPKH 91 (474)
Q Consensus 16 ~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~-~-l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~~~l~~l~~~ 91 (474)
+++. ..+..+.+|+.+.+.. .++.+++.. . +.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ +..+...
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecce
Confidence 3444 3566789999999975 466666543 3 899999999753 44444 46778888888776543 2222221
Q ss_pred ccccccCCccccccCCchhh-HHHHhcCCcccEEEccCcCccccC-CcccCCCCCcEEeccCCcCCCccC-ccCCCCCCC
Q 036075 92 KRSKISSNFESFWPFQFSEF-SEIMTSMEHLLELHLEGTAIRGLP-VSIEHLTGLVLLNLRDCKNLETLP-STIDGLKSL 168 (474)
Q Consensus 92 ~~~~~~~~L~~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L 168 (474)
. +..+..+..........+ ...+.+|.+|+.+.+..+ +..++ ..+.++.+|+.+++..+ ++.++ ..+.++..|
T Consensus 135 a-F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 A-FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILL 210 (394)
T ss_dssp T-TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTC
T ss_pred e-eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcccccc
Confidence 1 111111111111111111 134677888888888654 33443 34677778887777543 33332 234455555
Q ss_pred CEEecc
Q 036075 169 RNLYLS 174 (474)
Q Consensus 169 ~~L~l~ 174 (474)
+.+.+.
T Consensus 211 ~~i~~~ 216 (394)
T 4fs7_A 211 ENMEFP 216 (394)
T ss_dssp CBCCCC
T ss_pred ceeecC
Confidence 555544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=5e-10 Score=109.61 Aligned_cols=160 Identities=15% Similarity=0.057 Sum_probs=107.5
Q ss_pred CCccEEEecCccccccccccc----c-ccCcccEEecCCCCCCcc-cCCccc-cCCccEEEccCCcCCccchhhh-----
Q 036075 2 PNFEELDLGGCTRLREIHPTL----L-LHKKIILLNLKDCKSLTT-LPDKIC-MESLKILVLSGCRKFKNFREIV----- 69 (474)
Q Consensus 2 ~nL~~L~L~~c~~l~~~~~~~----~-~l~~L~~L~L~~c~~l~~-lp~~~~-l~~L~~L~L~~c~~l~~~~~~~----- 69 (474)
++|++|+|++|.....-...+ . ..++|+.|+|++|..-.. +..... +++|++|+|++|.........+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 578899999886433222222 2 236899999999864332 222222 6789999999986544332322
Q ss_pred cccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccc-----cCCcccCCCCC
Q 036075 70 GSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRG-----LPVSIEHLTGL 144 (474)
Q Consensus 70 ~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~-----l~~~i~~l~~L 144 (474)
...++|++|+|++|.+++.. ...++..+..+++|++|+|++|.+.+ ++..+...++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~------------------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAG------------------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp STTCCCCEEECCSSCCHHHH------------------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred hcCCccceeeCCCCCCChHH------------------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 24678999999998876422 23455667788899999999998874 45567778889
Q ss_pred cEEeccCCcCCC----ccCccCCCCCCCCEEeccCCCCC
Q 036075 145 VLLNLRDCKNLE----TLPSTIDGLKSLRNLYLSGCSKL 179 (474)
Q Consensus 145 ~~L~L~~c~~l~----~lp~~l~~L~~L~~L~l~~c~~l 179 (474)
+.|++++|.... .++..+...++|++|++++|...
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 999999886432 23444556788999999987643
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5.5e-08 Score=94.19 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=24.2
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+.+..+.|.|+|.+.|.++.........|
T Consensus 311 L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 343 (347)
T 2ifg_A 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343 (347)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred EEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence 344456677889999999999987666555544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=7.7e-08 Score=93.13 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=23.5
Q ss_pred ecCCCCCCcccCCccc-cCCccEEEccCCcCCccch-hhhcccCccceeeccCCCccc
Q 036075 32 NLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFR-EIVGSRKCLSELLLDGTDIKE 87 (474)
Q Consensus 32 ~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~~~l~~ 87 (474)
++++...++.+|. +. +++|++|+|+++..+..++ ..|.++++|+.|+|++|.+..
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence 4444324444554 33 4455555555422233222 334444444444444444443
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2.4e-08 Score=96.98 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCCcccEEEccCCCCCCCCccccc---cCCCCCCEEeCCCCCCCc-----ccHhhhcCCCcceeccccc
Q 036075 234 GLCSLRKLDLSDSNLGEGAIPNDI---GNLCSLKELYLSKNSFIT-----LPASINRLFNLEKLELEDC 294 (474)
Q Consensus 234 ~l~~L~~L~l~~~~l~~~~~~~~l---~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~l~~c 294 (474)
.+++|+.|++.+|.+.+. .+..+ ..+++|++|+|+.|.+.. ++..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 356677777766665421 11111 245677777777776653 3444455677777777666
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=2.3e-07 Score=90.02 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=91.9
Q ss_pred CCCccEEEecCccc----c-----ccccccccccCcccEEecCCCCCCcccCCccccCCccEEEccCCcCCccchhhhc-
Q 036075 1 MPNFEELDLGGCTR----L-----REIHPTLLLHKKIILLNLKDCKSLTTLPDKICMESLKILVLSGCRKFKNFREIVG- 70 (474)
Q Consensus 1 ~~nL~~L~L~~c~~----l-----~~~~~~~~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~- 70 (474)
+|+|+.|.+.+... + ..+...+..+++|+.|+|++|..+ .++. +.+++|++|+|..|.........+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHH
Confidence 36777777754311 0 123334456677777777776433 3343 3467777777776654333323332
Q ss_pred -ccCccceeeccCC--CccccCccccccccCCccccccCCchhhHHHH--hcCCcccEEEccCcCccc-cCCcc---cCC
Q 036075 71 -SRKCLSELLLDGT--DIKELPKHKRSKISSNFESFWPFQFSEFSEIM--TSMEHLLELHLEGTAIRG-LPVSI---EHL 141 (474)
Q Consensus 71 -~l~~L~~L~L~~~--~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l--~~l~~L~~L~L~~~~i~~-l~~~i---~~l 141 (474)
.+++|+.|+|+.+ ....-. .+..+...+ ..+++|++|++.+|.+.. .+..+ ..+
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~-----------------~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~ 278 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDG-----------------DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCS-----------------CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred ccCCCCcEEEEeccccccccch-----------------hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence 5777777776421 111000 011111112 357899999999988764 11112 357
Q ss_pred CCCcEEeccCCcCCC----ccCccCCCCCCCCEEeccCCCC
Q 036075 142 TGLVLLNLRDCKNLE----TLPSTIDGLKSLRNLYLSGCSK 178 (474)
Q Consensus 142 ~~L~~L~L~~c~~l~----~lp~~l~~L~~L~~L~l~~c~~ 178 (474)
++|++|+|+.|..-. .++..+..+++|+.|++++|..
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 899999998875332 2444455678999999998753
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=1e-05 Score=79.56 Aligned_cols=294 Identities=16% Similarity=0.130 Sum_probs=165.7
Q ss_pred CCCccEEEecCcccccccc-ccccccCcccEEecCCCCCCcccCCccc--cCCccEEEccC------------CcCC---
Q 036075 1 MPNFEELDLGGCTRLREIH-PTLLLHKKIILLNLKDCKSLTTLPDKIC--MESLKILVLSG------------CRKF--- 62 (474)
Q Consensus 1 ~~nL~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~------------c~~l--- 62 (474)
|.+|+++.|.. .++.++ ..+.+|.+|+.+++.++ ++.++.... +.+|+.+.+.. |...
T Consensus 70 c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 56788888864 466665 45778899999999653 444443222 55555544432 1111
Q ss_pred -----cc-chhhhcccCccceeeccCCCccccCccccccccCCcccccc-CCchhhH-HHHhcCCcccEEEccCcCcccc
Q 036075 63 -----KN-FREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWP-FQFSEFS-EIMTSMEHLLELHLEGTAIRGL 134 (474)
Q Consensus 63 -----~~-~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~-~~~~~l~-~~l~~l~~L~~L~L~~~~i~~l 134 (474)
.. -...|.++++|+.+.+.++ +..++.. .+..+.+|+.+.. ..+..+. ..+.++..|+.+.+..+.. .+
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~-~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~-~i 222 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNG-LFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLY-YL 222 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT-TTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCC-EE
T ss_pred cCccccccchhhhcccCCCcEEecCCc-cceeccc-cccCCCCceEEEcCCCceEeCchhhccccccceeecCCCce-Ee
Confidence 11 1235677888999888654 2333322 2333444554432 2233322 3466788888877765432 23
Q ss_pred CCcccCCCCCcEEeccCCcCCCccC-ccCCCCCCCCEEeccCCCCCccCCCCccCCCCCcEEecCCCCCCCCCCCCchhh
Q 036075 135 PVSIEHLTGLVLLNLRDCKNLETLP-STIDGLKSLRNLYLSGCSKLKSMPGNFGKVESLEVLDLSGCKGPPLSSSWYLPF 213 (474)
Q Consensus 135 ~~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 213 (474)
........+|+.+.+... ...+. ..+..+..|+.+.+... ........+..+..++.+........
T Consensus 223 ~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~---------- 289 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP---------- 289 (394)
T ss_dssp CTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC----------
T ss_pred ehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec----------
Confidence 333445577888877643 33333 34567788888888653 22233345666777777665442211
Q ss_pred HHHhhhccCCCCccCCCCCCCCCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCccc-HhhhcCCCcceeccc
Q 036075 214 LISLMRRCSDPMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLP-ASINRLFNLEKLELE 292 (474)
Q Consensus 214 l~~l~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~ 292 (474)
-..+..+.+|+.+.+..+ +.. --..++..+.+|+.++|..+ ++.+. ..+.+|.+|+.+.+.
T Consensus 290 ---------------~~~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 290 ---------------EKTFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp ---------------TTTTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ---------------cccccccccccccccccc-cce-echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 112567778888887654 221 11245677888888888643 55554 467778888888775
Q ss_pred cccccccCCCCCCCcceeeccccccccccccccccC--ccccccccccccc
Q 036075 293 DCKRLQSMPQLPPSIEEVRVNGCASLETLSGALKLC--NSEYISINCIDDL 341 (474)
Q Consensus 293 ~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~~~l~--~l~~~~c~~L~~l 341 (474)
.. ++.++.- -..+|.+|+.+.-...+. ...|.+|.+|+.+
T Consensus 352 ~~--l~~I~~~-------aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 352 LS--LRKIGAN-------AFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TT--CCEECTT-------TBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred cc--ccEehHH-------HhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 42 4443321 245666666654322211 2357788887654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=2.4e-05 Score=76.98 Aligned_cols=216 Identities=12% Similarity=0.184 Sum_probs=115.2
Q ss_pred HHhcCCcccEEEccCcCcccc-CCcccCCCCCcEEeccCCcCCCccCccCCCCCCCCEEeccCCCCCccCCCCccCCCCC
Q 036075 114 IMTSMEHLLELHLEGTAIRGL-PVSIEHLTGLVLLNLRDCKNLETLPSTIDGLKSLRNLYLSGCSKLKSMPGNFGKVESL 192 (474)
Q Consensus 114 ~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~c~~l~~~~~~l~~l~~L 192 (474)
.+..+.+|+.+.+... +..+ ...+..+.+|+.+.+.+. +..+........+|+.+.+... ........+..+.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhcccc
Confidence 3567778888887643 3343 335677788888887653 4555544444566777777542 112222345556666
Q ss_pred cEEecCCCCCCCCCCCCc------------hhhHHHhhh-ccCC-CCccCCCCCCCCCcccEEEccCCCCCCCCcccccc
Q 036075 193 EVLDLSGCKGPPLSSSWY------------LPFLISLMR-RCSD-PMALGFPSLSGLCSLRKLDLSDSNLGEGAIPNDIG 258 (474)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~------------~~~l~~l~~-~~~~-~~~~~l~~l~~l~~L~~L~l~~~~l~~~~~~~~l~ 258 (474)
+................. .+....... ...+ .....--.+.++..|+.+.+...... .-..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~~aF~ 285 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS--IGTGAFM 285 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE--ECTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce--ecCcccc
Confidence 655544332111110000 000000000 0000 00011112677888888888665321 1234567
Q ss_pred CCCCCCEEeCCCCCCCcccH-hhhcCCCcceeccccccccccCCCCCCCcceeeccccccccccccccc---cCcccccc
Q 036075 259 NLCSLKELYLSKNSFITLPA-SINRLFNLEKLELEDCKRLQSMPQLPPSIEEVRVNGCASLETLSGALK---LCNSEYIS 334 (474)
Q Consensus 259 ~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~~~---l~~l~~~~ 334 (474)
.+++|+.+.+. +.++.++. .+.+|.+|+.+.|.+ .++.+..- -..+|.+|+++.-+.+ +..-.|.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~-------aF~~C~~L~~i~ip~sv~~I~~~aF~~ 355 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDD-------AFAGCEQLERIAIPSSVTKIPESAFSN 355 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEEECTTCCBCCGGGGTT
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHh-------HhhCCCCCCEEEECcccCEEhHhHhhC
Confidence 78889999885 44565554 677888888888754 24444321 2456666666543222 22346889
Q ss_pred ccccccccccC
Q 036075 335 INCIDDLKLLG 345 (474)
Q Consensus 335 c~~L~~l~~~~ 345 (474)
|.+|+.+.+.+
T Consensus 356 C~~L~~i~~~~ 366 (394)
T 4gt6_A 356 CTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEESS
T ss_pred CCCCCEEEECC
Confidence 99998887765
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=0.00013 Score=71.61 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=47.1
Q ss_pred CccEEEecCcccccccc-ccccccCcccEEecCCC--CCCcccCCccc--cCCccEEEccCCcCCccch-hhhcccCccc
Q 036075 3 NFEELDLGGCTRLREIH-PTLLLHKKIILLNLKDC--KSLTTLPDKIC--MESLKILVLSGCRKFKNFR-EIVGSRKCLS 76 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~c--~~l~~lp~~~~--l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~ 76 (474)
.|+.+.+-. .++.+. ..+.+|.+|+.+.+.++ ..++.++.... +.+|+.+.+... +..++ ..+..+.+|+
T Consensus 65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 367777753 355554 45678899999988664 34555544322 677777666542 33333 4567777888
Q ss_pred eeeccC
Q 036075 77 ELLLDG 82 (474)
Q Consensus 77 ~L~L~~ 82 (474)
.+.+..
T Consensus 141 ~i~lp~ 146 (394)
T 4gt6_A 141 TVTIPE 146 (394)
T ss_dssp EEECCT
T ss_pred cccccc
Confidence 877754
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.14 E-value=9.6e-07 Score=77.19 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=61.4
Q ss_pred cCCccEEEccCC-cCCc----cchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCccc
Q 036075 48 MESLKILVLSGC-RKFK----NFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLL 122 (474)
Q Consensus 48 l~~L~~L~L~~c-~~l~----~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~ 122 (474)
.++|++|+|++| ..-. .+...+...++|++|+|++|.+.+-. ...+...+...++|+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g------------------~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------------------AFALAEMLKVNNTLK 96 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------------------HHHHHHHHHHCSSCC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH------------------HHHHHHHHHhCCCcC
Confidence 455666666665 3222 13344455566666666666654311 123344455566677
Q ss_pred EEEccCcCccc-----cCCcccCCCCCcEEec--cCCcCCC----ccCccCCCCCCCCEEeccCCC
Q 036075 123 ELHLEGTAIRG-----LPVSIEHLTGLVLLNL--RDCKNLE----TLPSTIDGLKSLRNLYLSGCS 177 (474)
Q Consensus 123 ~L~L~~~~i~~-----l~~~i~~l~~L~~L~L--~~c~~l~----~lp~~l~~L~~L~~L~l~~c~ 177 (474)
+|+|++|.|.+ +...+...++|++|++ ++|..-. .+...+...++|++|++++|.
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 77777766654 4455666666777777 5444222 123334445677777777654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1.8e-06 Score=73.92 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=60.2
Q ss_pred CccEEEecCccccccccccccccCcccEEecCCCCCCcc--cCCccc----cCCccEEEccCCcCCcc-chhhhcccCcc
Q 036075 3 NFEELDLGGCTRLREIHPTLLLHKKIILLNLKDCKSLTT--LPDKIC----MESLKILVLSGCRKFKN-FREIVGSRKCL 75 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~~~~~~l~~L~~L~L~~c~~l~~--lp~~~~----l~~L~~L~L~~c~~l~~-~~~~~~~l~~L 75 (474)
+|++|++++|....+-...+..+++|+.|+|++|..++. +..... +++|++|+|++|..++. --..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 589999999973333335567899999999999988763 211111 35799999999987765 23456788999
Q ss_pred ceeeccCCC
Q 036075 76 SELLLDGTD 84 (474)
Q Consensus 76 ~~L~L~~~~ 84 (474)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999874
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=1.9e-06 Score=75.26 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=17.4
Q ss_pred HHhcCCcccEEEccCcCccc-----cCCcccCCCCCcEEeccCCc
Q 036075 114 IMTSMEHLLELHLEGTAIRG-----LPVSIEHLTGLVLLNLRDCK 153 (474)
Q Consensus 114 ~l~~l~~L~~L~L~~~~i~~-----l~~~i~~l~~L~~L~L~~c~ 153 (474)
.+...++|++|+|++|.|.+ +...+...++|++|+|++|.
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 34444444555555444432 22233334444555554443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.1e-06 Score=73.61 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=38.5
Q ss_pred CCcccEEEccCCCCCCCCccccccCCCCCCEEeCCCCC-CCcc-cHhhhc----CCCcceeccccccccc
Q 036075 235 LCSLRKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNS-FITL-PASINR----LFNLEKLELEDCKRLQ 298 (474)
Q Consensus 235 l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~-l~~l-p~~l~~----l~~L~~L~l~~c~~l~ 298 (474)
-..|+.|++++|.+++..+ ..+..+++|++|+|++|. +++- -..+.. +++|++|+|++|.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 3468888888888776544 345677778888877774 4421 122333 2356666666665554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.91 E-value=0.0012 Score=64.16 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=47.3
Q ss_pred CccEEEecCcccccccc-ccccccCcccEEecCCCCCCcccCCccc-cCCccEEEccCCcCCccchh-hhcccCccceee
Q 036075 3 NFEELDLGGCTRLREIH-PTLLLHKKIILLNLKDCKSLTTLPDKIC-MESLKILVLSGCRKFKNFRE-IVGSRKCLSELL 79 (474)
Q Consensus 3 nL~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~c~~l~~~~~-~~~~l~~L~~L~ 79 (474)
+|+++.+.. .++.++ ..+..|.+|+.++|.. .++.++.... -.+|+.+.+.. .+..+.. .+.. .+|+.+.
T Consensus 47 ~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~~--~l~~I~~~aF~~-~~L~~i~ 119 (379)
T 4h09_A 47 RISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGME--RVKKFGDYVFQG-TDLDDFE 119 (379)
T ss_dssp GCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEECT--TCCEECTTTTTT-CCCSEEE
T ss_pred CCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCCCCceEECCc--eeeEeccceecc-CCccccc
Confidence 577777764 566776 4577889999999975 3666655433 23677777654 2444443 3443 4788888
Q ss_pred ccCC
Q 036075 80 LDGT 83 (474)
Q Consensus 80 L~~~ 83 (474)
+.++
T Consensus 120 lp~~ 123 (379)
T 4h09_A 120 FPGA 123 (379)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 7654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.75 E-value=0.0036 Score=60.73 Aligned_cols=57 Identities=5% Similarity=0.003 Sum_probs=38.2
Q ss_pred cccccCcccEEecCCCCCCcccCCcc-c-cCCccEEEccCCcCCccch-hhhcccCccceeeccC
Q 036075 21 TLLLHKKIILLNLKDCKSLTTLPDKI-C-MESLKILVLSGCRKFKNFR-EIVGSRKCLSELLLDG 82 (474)
Q Consensus 21 ~~~~l~~L~~L~L~~c~~l~~lp~~~-~-l~~L~~L~L~~c~~l~~~~-~~~~~l~~L~~L~L~~ 82 (474)
.+....+|+.+.+.+ .++.+++.. . +.+|+.++|... +..+. ..|.++ +|+.+.+..
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~ 100 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME 100 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc
Confidence 345667899988875 567776543 3 899999999753 55554 456666 566666543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=1.2e-05 Score=74.02 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=58.2
Q ss_pred hcCCcccEEEccCcCccccC---CcccCCCCCcEEeccCCcCCCccCccCCCCC--CCCEEeccCCCCCccCCC------
Q 036075 116 TSMEHLLELHLEGTAIRGLP---VSIEHLTGLVLLNLRDCKNLETLPSTIDGLK--SLRNLYLSGCSKLKSMPG------ 184 (474)
Q Consensus 116 ~~l~~L~~L~L~~~~i~~l~---~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~--~L~~L~l~~c~~l~~~~~------ 184 (474)
.++++|+.|+|++|.+..++ ..++.+++|+.|+|++|..- .+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 57889999999999888654 55678899999999987643 33 2233333 899999999887665552
Q ss_pred -CccCCCCCcEEec
Q 036075 185 -NFGKVESLEVLDL 197 (474)
Q Consensus 185 -~l~~l~~L~~L~l 197 (474)
.+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3567888888864
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=3.9e-05 Score=70.59 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=65.1
Q ss_pred cccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCcccEEEccCcCccccCCcccCCC--CCcEE
Q 036075 70 GSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTAIRGLPVSIEHLT--GLVLL 147 (474)
Q Consensus 70 ~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~--~L~~L 147 (474)
.++++|+.|+|++|.+..++ .++..+..+++|+.|+|++|.|.++. .+..+. +|+.|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~--------------------~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L 225 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD--------------------DMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEEL 225 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG--------------------GGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEE
T ss_pred hhCCCCCEEECCCCCCCCCc--------------------cchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceE
Confidence 56899999999999988654 34456788999999999999999873 244454 99999
Q ss_pred eccCCcCCCccC-------ccCCCCCCCCEEec
Q 036075 148 NLRDCKNLETLP-------STIDGLKSLRNLYL 173 (474)
Q Consensus 148 ~L~~c~~l~~lp-------~~l~~L~~L~~L~l 173 (474)
++.+|.....+| ..+..+++|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999998655555 23567899998864
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.0023 Score=55.72 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=47.5
Q ss_pred cCCccEEEccCCcCCc-----cchhhhcccCccceeeccCCCccccCccccccccCCccccccCCchhhHHHHhcCCccc
Q 036075 48 MESLKILVLSGCRKFK-----NFREIVGSRKCLSELLLDGTDIKELPKHKRSKISSNFESFWPFQFSEFSEIMTSMEHLL 122 (474)
Q Consensus 48 l~~L~~L~L~~c~~l~-----~~~~~~~~l~~L~~L~L~~~~l~~l~~~~~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~ 122 (474)
-+.|+.|+|+++..+. .+.+.+..-..|+.|+|++|.|.+-.. ..+.+.+..-..|+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga------------------~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA------------------RGLIELIETSPSLR 101 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH------------------TTHHHHHHHCSSCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH------------------HHHHHHHhcCCccC
Confidence 3456666666642232 134445555667777777766653211 23445555566677
Q ss_pred EEEccCcCccc-----cCCcccCCCCCcEEeccCC
Q 036075 123 ELHLEGTAIRG-----LPVSIEHLTGLVLLNLRDC 152 (474)
Q Consensus 123 ~L~L~~~~i~~-----l~~~i~~l~~L~~L~L~~c 152 (474)
.|+|++|.|.. +...+..-+.|+.|+|+++
T Consensus 102 ~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 77777766653 3334444555666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.79 E-value=0.0055 Score=53.28 Aligned_cols=112 Identities=11% Similarity=0.197 Sum_probs=73.5
Q ss_pred cccCcccEEecCCCCCCc-----ccCCccc-cCCccEEEccCCcCCcc----chhhhcccCccceeeccCCCccccCccc
Q 036075 23 LLHKKIILLNLKDCKSLT-----TLPDKIC-MESLKILVLSGCRKFKN----FREIVGSRKCLSELLLDGTDIKELPKHK 92 (474)
Q Consensus 23 ~~l~~L~~L~L~~c~~l~-----~lp~~~~-l~~L~~L~L~~c~~l~~----~~~~~~~l~~L~~L~L~~~~l~~l~~~~ 92 (474)
.+-+.|+.|+|+++..+. .+-+.+. -.+|+.|+|++|..-.. +.+.+..-+.|+.|+|++|.|..-.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G--- 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL--- 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---
Confidence 456789999998864443 2233333 67899999999876543 5556667788999999999887422
Q ss_pred cccccCCccccccCCchhhHHHHhcCCcccEEEccCcC---ccc-----cCCcccCCCCCcEEeccCC
Q 036075 93 RSKISSNFESFWPFQFSEFSEIMTSMEHLLELHLEGTA---IRG-----LPVSIEHLTGLVLLNLRDC 152 (474)
Q Consensus 93 ~~~~~~~L~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~---i~~-----l~~~i~~l~~L~~L~L~~c 152 (474)
...+.+.+..-..|++|+|+++. +.. +...+..-+.|+.|+++.+
T Consensus 115 ---------------a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 ---------------LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp ---------------HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred ---------------HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 23344556666778899987643 221 3334555566777776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.41 E-value=0.074 Score=42.80 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=38.6
Q ss_pred cEEEccCCCCCCCCccccccCCCCCCEEeCCCCCCCcccH-hhhcCCCcceecccccc
Q 036075 239 RKLDLSDSNLGEGAIPNDIGNLCSLKELYLSKNSFITLPA-SINRLFNLEKLELEDCK 295 (474)
Q Consensus 239 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~c~ 295 (474)
..++.++.+++...+|..+ .++|++|+|++|+++.+|. .+..+++|+.|+|.+++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3667777777522466543 2468888888888888876 45778888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.53 E-value=0.23 Score=39.78 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=23.4
Q ss_pred EEEccCcCcc--ccCCcccCCCCCcEEeccCCcCCCccCc-cCCCCCCCCEEeccCC
Q 036075 123 ELHLEGTAIR--GLPVSIEHLTGLVLLNLRDCKNLETLPS-TIDGLKSLRNLYLSGC 176 (474)
Q Consensus 123 ~L~L~~~~i~--~l~~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~c 176 (474)
.++.++.+++ .+|..+ ..+|+.|+|++|. ++.+|. .+..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 4555666665 555432 1245555555543 233332 2333444444444443
No 165
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=60.46 E-value=13 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.4
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+.+..+.|.|+|.+.|..+.........|.
T Consensus 64 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 97 (103)
T 1wwb_X 64 LQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97 (103)
T ss_dssp EEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred EEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEC
Confidence 5555777888999999999999987766665553
No 166
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=52.40 E-value=18 Score=28.31 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=24.7
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+.+..+.|.|+|++.|..|.....-...|
T Consensus 65 L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v 97 (126)
T 1he7_A 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97 (126)
T ss_dssp EEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EEECcCCCCCCEEEEEEEEECCCeEEEEEEEEE
Confidence 444566778889999999999997766555444
No 167
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=43.43 E-value=20 Score=25.80 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=25.8
Q ss_pred ccccccccccceeeeccccccccCCceeEEEEEE
Q 036075 436 NVEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
.+...+....+.|.|+|.+.|..+.......+.|
T Consensus 63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 96 (98)
T 1gl4_B 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96 (98)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEeCCChhhCEEEEEEecCCCCccccEEEEEE
Confidence 3555577778899999999999987666655554
No 168
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=41.31 E-value=15 Score=29.32 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=27.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|.|++.|.++.......+.|+
T Consensus 105 L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 105 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 4455777888999999999999988777777664
No 169
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=39.17 E-value=15 Score=27.56 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=25.8
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|.|.+.|.++......++.|.
T Consensus 71 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 104 (107)
T 3knb_B 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEecCChhhCEEEEEEEEECCCEEEEEEEEEEE
Confidence 3344666778899999999999987776666654
No 170
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=38.58 E-value=32 Score=25.79 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=23.7
Q ss_pred cccccccccceeeeccccccccCCceeEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKM 467 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (474)
+...+....+.|.|+|.+.|.++........
T Consensus 67 L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 97 (118)
T 1wwc_A 67 LLFNKPTHYNNGNYTLIAKNPLGTANQTING 97 (118)
T ss_dssp EEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence 4445667778899999999999876665554
No 171
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=38.56 E-value=14 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=24.6
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+....+.|.|+|.+.|..+.......+.|
T Consensus 67 L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 67 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence 334466677889999999999988766666555
No 172
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=38.22 E-value=19 Score=25.94 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=26.4
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|.++.......+.|.
T Consensus 60 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 93 (97)
T 2bk8_A 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93 (97)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEET
T ss_pred EEEecCChhhCeEEEEEEECCCCeEeEEEEEEEE
Confidence 4444667788899999999999988777666654
No 173
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=37.31 E-value=21 Score=26.47 Aligned_cols=34 Identities=6% Similarity=-0.111 Sum_probs=26.6
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+-|.
T Consensus 74 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 74 LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence 4445777888999999999999987776666553
No 174
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=37.05 E-value=16 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=22.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKM 467 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (474)
+...+....+.|.|+|.+.|..+........
T Consensus 60 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 90 (93)
T 1wit_A 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90 (93)
T ss_dssp EECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCChhcCEEEEEEEEcCCCeEEEEEEE
Confidence 4445667788899999999999865444443
No 175
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=37.01 E-value=16 Score=26.37 Aligned_cols=34 Identities=6% Similarity=-0.128 Sum_probs=25.6
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+...+...+.|.
T Consensus 64 L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 97 (99)
T 1g1c_A 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97 (99)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEe
Confidence 3344666778899999999999887776666553
No 176
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=36.88 E-value=16 Score=26.93 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=24.2
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+.-.+....+.|.|+|.+.|.++.........|
T Consensus 65 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 97 (100)
T 3knb_A 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97 (100)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEcCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence 334466677889999999999997666555544
No 177
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=36.22 E-value=17 Score=26.19 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=24.3
Q ss_pred ccccccccccceeeeccccccccCCceeEEEEEE
Q 036075 436 NVEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
.+...+....+.|.|+|.+.|..+.......+.|
T Consensus 61 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence 3455567778889999999998887555544443
No 178
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.90 E-value=25 Score=25.34 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=26.1
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+.|.
T Consensus 64 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97 (100)
T ss_dssp EEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEE
T ss_pred EEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEe
Confidence 4444667788899999999999887766666654
No 179
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=33.18 E-value=20 Score=25.80 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=24.6
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+....+.|.|+|.+.|..+.......+.|
T Consensus 64 L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V 96 (99)
T 1u2h_A 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96 (99)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEccCCcCCCEEEEEEEEECCCceeEEEEEEE
Confidence 344466677889999999999988766665554
No 180
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=33.07 E-value=21 Score=26.69 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=26.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+.|.
T Consensus 65 L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 98 (114)
T 2cqv_A 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98 (114)
T ss_dssp EEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred EEECCCChhcCEEEEEEEEECCCcEEEEEEEEEE
Confidence 4445777888999999999999977766666664
No 181
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=32.75 E-value=27 Score=26.37 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=26.9
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|.|.+.|..+.......+.|.
T Consensus 76 L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~ 109 (122)
T 3s35_X 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109 (122)
T ss_dssp EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEECCCCcccCEEEEEEEccCCCceEEEEEEEEe
Confidence 4445777788899999999999987777776664
No 182
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=31.44 E-value=30 Score=25.22 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=22.9
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+.|.
T Consensus 66 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 99 (108)
T 3kvq_A 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99 (108)
T ss_dssp EEECSCCGGGCEEEEEEEC----CEEEEEEEEEE
T ss_pred EEEeecCcccCEEEEEEEEeCCCceEEEEEEEEe
Confidence 4444667778899999999999988877777664
No 183
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=30.83 E-value=36 Score=25.03 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=24.4
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+....+.|.|+|.+.|..+.......+.|
T Consensus 72 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 104 (106)
T 1nct_A 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104 (106)
T ss_dssp EEECCCCSSCCSEEEECCBCSSCBCCEEEEEEE
T ss_pred EEECcCCchhCEEEEEEEEeCCCeEEEEEEEEE
Confidence 344466778889999999999988666555544
No 184
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.66 E-value=27 Score=26.28 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=26.4
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+......++.|.
T Consensus 81 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 114 (118)
T 2e7c_A 81 FFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114 (118)
T ss_dssp EEESSCCTTTCEEEEEEEECSSCEECCEEEEEEE
T ss_pred EEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 4445667788899999999999977776666665
No 185
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=29.20 E-value=27 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=24.1
Q ss_pred cccccccceeeeccccccccCCceeEEEEEEe
Q 036075 439 FFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
..+....+.|.|+|.+.|..+.......+.|.
T Consensus 66 i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97 (100)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCCCcccCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 34566778899999999999887666665554
No 186
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=27.01 E-value=28 Score=27.27 Aligned_cols=37 Identities=8% Similarity=-0.043 Sum_probs=29.5
Q ss_pred CccccccccccceeeeccccccccCCceeEEEEEEee
Q 036075 435 HNVEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVAT 471 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474)
..+...+.+..+-|.|.|.+.+..+......+|.|..
T Consensus 75 ~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred EEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 3456668888899999999999987777777777754
No 187
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.79 E-value=37 Score=25.41 Aligned_cols=33 Identities=12% Similarity=-0.038 Sum_probs=24.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+.+..+.|.|+|.+.|..+.......+.|
T Consensus 64 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 96 (118)
T 2eo9_A 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96 (118)
T ss_dssp EEEESCCGGGCCCEEEEEECSSCEEEEECCEEE
T ss_pred EEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEE
Confidence 444466777889999999999987665555554
No 188
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=26.38 E-value=30 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=25.7
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+.|.
T Consensus 66 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 99 (103)
T 3qp3_A 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99 (103)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 3444666778899999999999987776666654
No 189
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=25.97 E-value=31 Score=24.59 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=23.9
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+....+.|.|+|.+.|..+.......+.|
T Consensus 64 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 96 (99)
T 3puc_A 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96 (99)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEECCCCcccCEEEEEEEEeCCCcEeEEEEEEE
Confidence 334456677889999999999887666555544
No 190
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=25.66 E-value=41 Score=23.90 Aligned_cols=33 Identities=6% Similarity=-0.019 Sum_probs=23.8
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+....+.|.|+|.+.+..+.........|
T Consensus 53 L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 85 (95)
T 4hwu_A 53 LQIKGATPRDSGLYACTAARTVDSETWIFMVNV 85 (95)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEECcCCcccCEEEEEEEccCCCcEEEEEEEEE
Confidence 445577778889999999999885554444444
No 191
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.71 E-value=27 Score=25.06 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=20.4
Q ss_pred cccccccccceeeeccccccccCCceeE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVV 464 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (474)
+...+....+.|.|+|.+.|..+.....
T Consensus 66 L~i~~v~~~D~G~Y~C~a~N~~g~~~~~ 93 (99)
T 2yr3_A 66 LHIQDALPEDHGTYTCLAENALGQVSCS 93 (99)
T ss_dssp EEECSCCTTCCBCEEEEEECSSCEEEEE
T ss_pred EEECCCChhhCEEEEEEEEECCCeEEEE
Confidence 3344666778899999999998864433
No 192
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.50 E-value=26 Score=25.85 Aligned_cols=34 Identities=12% Similarity=-0.019 Sum_probs=24.7
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.+.|+|.+.|..+.......+.|.
T Consensus 68 L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 101 (110)
T 2dm2_A 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101 (110)
T ss_dssp EEESSCCTTTCSCCEEEEECTTCCEEECCCEEEE
T ss_pred EEECCCChhhCEEEEEEEEECCCeEEEEEEEEEE
Confidence 3334667778899999999999987655555553
No 193
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.37 E-value=28 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=24.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.+.|+|.+.|..+.......+.|.
T Consensus 68 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 101 (110)
T 2dm3_A 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101 (110)
T ss_dssp EEESSCCGGGCSBBCEEEECSSCEEEECCEEEEE
T ss_pred EEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEe
Confidence 4444667778899999999998876555555553
No 194
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=24.22 E-value=38 Score=24.63 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=24.7
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+.|.
T Consensus 71 L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 104 (107)
T 3irg_B 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEccCCHHhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 4444667778899999999998876666555543
No 195
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=24.11 E-value=35 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEE
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAV 469 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
+...+....+.|.|+|.+.|..+.......+.|
T Consensus 65 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 97 (100)
T 3irg_A 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97 (100)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEeecCcccCEEEEEEEEeCCCcEEEEEEEEE
Confidence 334456677889999999999888665555544
No 196
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=23.60 E-value=28 Score=25.37 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=20.1
Q ss_pred cccccccccceeeeccccccccCCce
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNF 462 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (474)
+...+....+.|.|+|.+.+..+..+
T Consensus 78 L~I~~v~~~D~G~Y~C~a~n~~g~~~ 103 (112)
T 3so5_A 78 LRLRNVEFTSEGXYQCVISNHFGSSY 103 (112)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEeccccccCCeEEEEEEeCCCcEE
Confidence 44456677788999999999887654
No 197
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=23.11 E-value=37 Score=25.49 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=25.3
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...+....+.|.|+|.+.|..+.......+.|.
T Consensus 75 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 108 (116)
T 2kkq_A 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108 (116)
T ss_dssp EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEe
Confidence 4444666778899999999999877666666554
No 198
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=21.50 E-value=68 Score=23.01 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=23.5
Q ss_pred cccccccccceeeeccccccccCCceeEEEEEEe
Q 036075 437 VEFFNQPRNQWTRYTTYNLNEFYPNFVVTKMAVA 470 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
+...|....+.|.|+|.+.+ .+......++.|.
T Consensus 73 L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V~ 105 (108)
T 3m45_A 73 ISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVL 105 (108)
T ss_dssp EEECSCCGGGCEEEEEEECS-SSCEEEEEEEEEE
T ss_pred EEECCCChhHCeEEEEEEEc-CCCcEEEEEEEEE
Confidence 44557778889999999998 6655555555543
Done!