BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036076
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 163/322 (50%), Gaps = 54/322 (16%)
Query: 7 MENSLSETLITFYPLAGRFIEDRTFVDCNDQGAEYLIAQLEAELWN--RFILFAKEVVAF 64
++ SLS+ L FYPLAGR I + VDCND G ++ A+++A+L + ++ +++ +
Sbjct: 63 LKQSLSKVLTHFYPLAGR-INVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY 121
Query: 65 SPTV--------------LAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAACRF 110
P+ LAV+++ F+CGG AIGV LSHK+AD + TF AW A CR
Sbjct: 122 LPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCR- 180
Query: 111 GNTTEVVTCPSFEMGSLLLARDTDKLKIP--VPEEYGVTMVTKRFVFDELAISTLKAKAK 168
TE+V P+F++ + D P VP+E +V KRFVFD+ I L+A+A
Sbjct: 181 -GETEIV-LPNFDLAARHFP-PVDNTPSPELVPDE---NVVMKRFVFDKEKIGALRAQAS 234
Query: 169 AIGE---VSRVVVMTAVLWKARILVVQAKHGLLWPSLLNISYNLQRK---------TGVI 216
+ E SRV ++ A +WK I V +AK+G ++ + NL+ + G I
Sbjct: 235 SASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNI 294
Query: 217 ARF----KTSECKLDFNDSAALLGNSIRETAADCLKTEDADDLFTLMISSMTEIHEILEK 272
A +E DF D L S+ +T DD ++ MT ++E LE
Sbjct: 295 ATLLFAAVDAEWDKDFPDLIGPLRTSLEKT---------EDDHNHELLKGMTCLYE-LEP 344
Query: 273 NETDICVFTSVCGFPYYEVDFG 294
E + FTS C +Y++DFG
Sbjct: 345 QE--LLSFTSWCRLGFYDLDFG 364
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 44/226 (19%)
Query: 5 ELMENSLSETLITFYPLAGRFIED---RTFVDCNDQGAEYLIAQLEAELWNRFILFAK-- 59
++++++LS L+ FYP+AGR D R ++CN +G ++ A+ + + + F FA
Sbjct: 56 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVV-DDFGDFAPTL 114
Query: 60 EVVAFSPTV-----------LAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAAC 108
E+ P V L +Q+ F CGG+++GV + H ADGF F +W+
Sbjct: 115 ELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
Query: 109 RFGNTTEVVTCPSFEMGSLLLARDTDK-----LKIPVPEEYGVTMVTKR----------- 152
R + VT P F +LL ARD + ++ P V+ T +
Sbjct: 175 RGLD----VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSI 230
Query: 153 FVFDELAISTLKAKAKAIGEV---SRVVVMTAVLW----KARILVV 191
F IS LKAK+K G S ++ +W KAR L V
Sbjct: 231 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 276
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 44/226 (19%)
Query: 5 ELMENSLSETLITFYPLAGRFIED---RTFVDCNDQGAEYLIAQLEAELWNRFILFAK-- 59
++++++LS L+ FYP+AGR D R ++CN +G ++ A+ + + + F FA
Sbjct: 59 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVV-DDFGDFAPTL 117
Query: 60 EVVAFSPTV-----------LAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAAC 108
E+ P V L +Q+ F CGG+++GV + H ADGF F +W+
Sbjct: 118 ELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 109 RFGNTTEVVTCPSFEMGSLLLARDTDK-----LKIPVPEEYGVTMVTKR----------- 152
R + VT P F +LL ARD + ++ P V+ T
Sbjct: 178 RGLD----VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI 233
Query: 153 FVFDELAISTLKAKAKAIGEV---SRVVVMTAVLW----KARILVV 191
F IS LKAK+K G S ++ +W KAR L V
Sbjct: 234 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 44/226 (19%)
Query: 5 ELMENSLSETLITFYPLAGRFIED---RTFVDCNDQGAEYLIAQLEAELWNRFILFAK-- 59
++++++LS L+ FYP+AGR D R ++CN +G ++ A+ + + + F FA
Sbjct: 59 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVV-DDFGDFAPTL 117
Query: 60 EVVAFSPTV-----------LAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAAC 108
E+ P V L +Q+ F GG+++GV + H ADGF F +W+
Sbjct: 118 ELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 109 RFGNTTEVVTCPSFEMGSLLLARDTDK-----LKIPVPEEYGVTMVTKR----------- 152
R + VT P F +LL ARD + ++ P V+ T
Sbjct: 178 RGLD----VTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI 233
Query: 153 FVFDELAISTLKAKAKAIGEV---SRVVVMTAVLW----KARILVV 191
F IS LKAK+K G S ++ +W KAR L V
Sbjct: 234 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 23/132 (17%)
Query: 7 MENSLSETLITFYPLAGR--------------FIEDR----TFVDCN-DQGAEYLIAQLE 47
+++SLS TL FYP G+ ++E TF +CN D
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 48 AELWNRFILFAKEVVAFSPTV----LAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQA 103
+ + + E S + +VQ+ +F G+AIG+ H + D F F +A
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKA 184
Query: 104 WAAACRFGNTTE 115
W + R GN E
Sbjct: 185 WTSIARSGNNDE 196
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 23/132 (17%)
Query: 7 MENSLSETLITFYPLAGR--------------FIEDR----TFVDCN-DQGAEYLIAQLE 47
+++SLS TL FYP G+ ++E TF +CN D
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 48 AELWNRFILFAKEVVAFSPTV----LAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQA 103
+ + + E S + +VQ+ +F G+AIG+ H + D F F +A
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKA 184
Query: 104 WAAACRFGNTTE 115
W + R GN E
Sbjct: 185 WTSIARSGNNDE 196
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 68 VLAVQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAACRFGNTTE 115
VLA+Q+ +F G++IG H DG I F +AWA +FG +
Sbjct: 144 VLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQ 191
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 211 RKTGVIARFKTSECKLDFNDSAALLGNSIRETAADCLKTEDADDLFTLMISSMTEIHEIL 270
RK ++++ E LD D +L NS++ + T+ A ++ + ++TE E L
Sbjct: 74 RKNISKHKYQSRESFLD--DVNLILANSVKYNGPESQYTKTAQEIVNICYQTITEYDEHL 131
Query: 271 EKNETDIC 278
+ E DIC
Sbjct: 132 TQLEKDIC 139
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 211 RKTGVIARFKTSECKLDFNDSAALLGNSIRETAADCLKTEDADDLFTLMISSMTEIHEIL 270
RK ++++ E LD D +L NS++ + T+ A ++ + ++TE E L
Sbjct: 77 RKNISKHKYQSRESFLD--DVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 134
Query: 271 EKNETDIC 278
+ E DIC
Sbjct: 135 TQLEKDIC 142
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 211 RKTGVIARFKTSECKLDFNDSAALLGNSIRETAADCLKTEDADDLFTLMISSMTEIHEIL 270
RK ++++ E LD D +L NS++ + T+ A ++ + ++TE E L
Sbjct: 217 RKNISKHKYQSRESFLD--DVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 274
Query: 271 EKNETDIC 278
+ E DIC
Sbjct: 275 TQLEKDIC 282
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 93 DGFVIFTFFQAWA--AACRFGNTTEVVTC-PSFEMGSLLLARDTDKLKIPVPEEYGVTMV 149
+G VI T QA + F +E V P ++ LL R T K +PV E +T +
Sbjct: 791 EGGVIHTLQQAVTNDSYTTFKKYSEQVNKRPPMQLRDLLELRST-KAPVPVDEVESITAI 849
Query: 150 TKRFVFDELAISTLKAKAKA 169
KRF+ +++ L +A
Sbjct: 850 RKRFITPGMSMGALSPEAHG 869
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 211 RKTGVIARFKTSECKLDFNDSAALLGNSIRETAADCLKTEDADDLFTLMISSMTEIHEIL 270
RK ++++ E LD D +L NS++ + T+ A ++ + ++TE E L
Sbjct: 196 RKNISKHKYQSRESFLD--DVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 253
Query: 271 EKNETDIC 278
+ E DIC
Sbjct: 254 TQLEKDIC 261
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 93 DGFVIFTFFQAWA--AACRFGNTTEVVTC-PSFEMGSLLLARDTDKLKIPVPEEYGVTMV 149
+G VI T QA + F +E V P ++ LL R T K +PV E +T +
Sbjct: 791 EGGVIHTLQQAVTNDSYTTFKKYSEQVNKRPPMQLRDLLELRST-KAPVPVDEVESITAI 849
Query: 150 TKRFVFDELAISTLKAKAKA 169
KRF+ +++ L +A
Sbjct: 850 RKRFITPGMSMGALSPEAHG 869
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 211 RKTGVIARFKTSECKLDFNDSAALLGNSIRETAADCLKTEDADDLFTLMISSMTEIHEIL 270
RK ++++ E LD D +L NS++ + T+ A ++ + ++TE E L
Sbjct: 184 RKNISKHKYQSRESFLD--DVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 241
Query: 271 EKNETDIC 278
+ E DIC
Sbjct: 242 TQLEKDIC 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,917,841
Number of Sequences: 62578
Number of extensions: 294010
Number of successful extensions: 811
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 18
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)