Query 036076
Match_columns 294
No_of_seqs 168 out of 1196
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 15:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ja1 c.43.1.2 (A:1-175) Pol 97.4 0.00019 1.4E-08 55.7 7.5 102 4-109 36-144 (175)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 97.4 0.00016 1.2E-08 56.1 7.1 106 4-109 35-146 (174)
3 d1q9ja2 c.43.1.2 (A:181-418) P 91.9 2.1 0.00015 33.1 14.5 90 149-242 32-134 (238)
4 d1q23a_ c.43.1.1 (A:) Chloramp 83.6 0.38 2.8E-05 37.7 3.5 43 66-109 164-209 (214)
5 d3claa_ c.43.1.1 (A:) Chloramp 83.1 0.41 3E-05 37.5 3.5 29 81-109 181-209 (213)
6 d1b5sa_ c.43.1.1 (A:) Dihydrol 69.4 1.6 0.00012 34.7 3.4 29 81-109 207-235 (242)
7 d1dpba_ c.43.1.1 (A:) Dihydrol 66.4 2.1 0.00015 34.0 3.5 27 83-109 210-236 (243)
8 d1scza_ c.43.1.1 (A:) Dihydrol 66.0 2.2 0.00016 33.7 3.5 29 81-109 196-224 (233)
9 d1l5aa2 c.43.1.2 (A:175-424) V 49.4 47 0.0034 24.7 10.1 89 147-242 33-131 (250)
10 d1x93a1 a.43.1.3 (A:31-73) Unc 26.3 43 0.0031 17.4 4.1 37 150-191 3-39 (43)
11 d1nm8a1 c.43.1.3 (A:9-385) Car 25.0 32 0.0024 28.4 4.3 37 71-109 298-334 (377)
12 d1xl7a1 c.43.1.3 (A:11-392) Pe 20.5 29 0.0021 28.8 3.1 36 71-108 301-336 (382)
No 1
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.40 E-value=0.00019 Score=55.70 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhchhccCCCCcccc--CceEEEecCCC----ceEEEEEecHhhh-hccccCccccccCCCceEEEEEEEe
Q 036076 4 LELMENSLSETLITFYPLAGRFIE--DRTFVDCNDQG----AEYLIAQLEAELW-NRFILFAKEVVAFSPTVLAVQLNMF 76 (294)
Q Consensus 4 ~~~Lk~sLs~~L~~~~~laGr~~~--~~~~i~~~~~g----v~f~~a~~d~~~l-~~l~P~~~~~~~~~~Pll~vQvt~f 76 (294)
++.|++++..++..++.|-.++.. |.......++. +.......+.... ....+.. ...+.|+..+.+..-
T Consensus 36 ~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---l~~~~~l~~~~i~~~ 112 (175)
T d1q9ja1 36 VDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDGTAATNGSPSGNAELR---LDQSVSLLHLQLILR 112 (175)
T ss_dssp HHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCSSSCCCEEEC------------CCCC---CCTTTCSEEEEEECC
T ss_pred HHHHHHHHHHHHHhchhheEEEEEeCCeeEEEEECCCCCccEEEEEcccchhHHHHhhcccC---ccCCCCeEEEEEEec
Confidence 578999999999999999988543 22222221111 1111111111100 1111111 123456666655544
Q ss_pred ecCeEEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 77 DCGGLAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 77 ~cGG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
. ++..+.+.+||.++||.|+..|++.+.+...
T Consensus 113 ~-~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y~ 144 (175)
T d1q9ja1 113 E-GGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (175)
T ss_dssp S-SSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred C-CeEEEEEEccccccCHhHHHHHHHHHHHHHH
Confidence 4 7888899999999999999999998876554
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=97.40 E-value=0.00016 Score=56.10 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhchhccCCCCcccc-CceEEEecCCCceEEEEEec--Hh-hhhccccCc--cccccCCCceEEEEEEEee
Q 036076 4 LELMENSLSETLITFYPLAGRFIE-DRTFVDCNDQGAEYLIAQLE--AE-LWNRFILFA--KEVVAFSPTVLAVQLNMFD 77 (294)
Q Consensus 4 ~~~Lk~sLs~~L~~~~~laGr~~~-~~~~i~~~~~gv~f~~a~~d--~~-~l~~l~P~~--~~~~~~~~Pll~vQvt~f~ 77 (294)
.++|++++.+++...+.|--++.. ++....--...+++.....+ .+ .....+-.. ...+..+.|++.+.+-...
T Consensus 35 ~~~l~~A~~~l~~rh~~LRt~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~pl~r~~l~~~~ 114 (174)
T d1l5aa1 35 TTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLS 114 (174)
T ss_dssp HHHHHHHHHHHHHTCGGGGEEECTTCCEEECSSCCCCEEEECTTCTTHHHHHHHHHHHHHTSCCCCBTSCSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCchheEEEeccCcEEEEEEeeceeeEecccccchHHHHHHHHHHHHhCCccccCCCcEEEEEEEeC
Confidence 578999999999999999777444 22211111222333222211 11 111111000 0112345688888887777
Q ss_pred cCeEEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 78 CGGLAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 78 cGG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
.|...+.+++||.++||.|+..|++.++++.+
T Consensus 115 ~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~ 146 (174)
T d1l5aa1 115 HSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (174)
T ss_dssp TTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeecccEEEcHhHHHHHHHHHHHHHH
Confidence 78899999999999999999999999988765
No 3
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=91.91 E-value=2.1 Score=33.11 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=62.2
Q ss_pred EEEEEEEcHHHHHHHHHHHccCCCCCeehhHHHHHHHHHHHHhccccCCCCceEEEEEeeCccccc------cceeecc-
Q 036076 149 VTKRFVFDELAISTLKAKAKAIGEVSRVVVMTAVLWKARILVVQAKHGLLWPSLLNISYNLQRKTG------VIARFKT- 221 (294)
Q Consensus 149 ~~~~f~f~~~~i~~Lk~~~~~~~~~S~~d~l~A~iW~~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~------~~~~~~~- 221 (294)
....+.++++.-++|++.|. ...+|.+.++.|.+-..+.+-... . +....+..+++.|+++. .+|+...
T Consensus 32 ~~~~~~ls~~~t~~l~~~~~-~~~~T~~~~l~aa~~~~l~~~~~~-~--~~~~~~~~~~~~r~~~~~~~~~~~~G~~~~~ 107 (238)
T d1q9ja2 32 PVTRLWLSKQQTSDLMAFGR-EHRLSLNAVVAAAILLTEWQLRNT-P--HVPIPYVYPVDLRFVLAPPVAPTEATNLLGA 107 (238)
T ss_dssp CEEEECCCHHHHHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHTC-S--SCCEEEEEEEETTTTSSSCCCTTTBSCCEEE
T ss_pred ceEEEEeCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHhCC-C--CccccccccccccccccCccccceeEeeeee
Confidence 35567899999999999986 346788998888654444443322 1 34578999999999874 3333211
Q ss_pred -----c-cccCcHHHHHHHHHHHHHHh
Q 036076 222 -----S-ECKLDFNDSAALLGNSIRET 242 (294)
Q Consensus 222 -----~-~~~~~l~~~A~~ir~ai~~~ 242 (294)
. +...++.++++.+++.+...
T Consensus 108 ~~~r~~~~~~~~~~~l~~~v~~~l~~~ 134 (238)
T d1q9ja2 108 ASYLAEIGPNTDIVDLASDIVATLRAD 134 (238)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 1 24578899999998888653
No 4
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=83.60 E-value=0.38 Score=37.75 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=32.4
Q ss_pred CceEEE-EEEEeecCe--EEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 66 PTVLAV-QLNMFDCGG--LAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 66 ~Pll~v-Qvt~f~cGG--~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
.|.+++ |+.. ..|- +-|++++||.+.||.-...|++.+.+...
T Consensus 164 vpii~~Gk~~~-~~~r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le 209 (214)
T d1q23a_ 164 APVFTMGKYYT-QGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 209 (214)
T ss_dssp SCEEEECCCEE-ETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEecceEE-ECCEEEEEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 466554 4332 3243 35899999999999999999999998875
No 5
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=83.05 E-value=0.41 Score=37.46 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=26.9
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 81 LAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 81 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
+-|++++||.+.||.-...|++.+.+.+.
T Consensus 181 m~lsls~dHrviDG~~aa~Fl~~lk~~le 209 (213)
T d3claa_ 181 LPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecccccccHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999875
No 6
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=69.39 E-value=1.6 Score=34.66 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=26.6
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 81 LAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 81 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
+-|++++.|.+.||.-...|++.|.+..-
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE 235 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLS 235 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999875
No 7
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=66.42 E-value=2.1 Score=34.00 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=25.6
Q ss_pred EecccccccchhhHHHHHHHHHHHHHh
Q 036076 83 IGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 83 lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
|++++-|.+.||.....|++.|.+..-
T Consensus 210 ltls~DHRvidGa~aa~FL~~l~~~lE 236 (243)
T d1dpba_ 210 LSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccccHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999875
No 8
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=65.96 E-value=2.2 Score=33.66 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=26.8
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 81 LAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 81 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
+.|++++-|.+.||.-...|++.|.+..-
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE 224 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999875
No 9
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=49.38 E-value=47 Score=24.74 Aligned_cols=89 Identities=10% Similarity=0.033 Sum_probs=60.2
Q ss_pred ceEEEEEEEcHHHHHHHHHHHccCCCCCeehhHHHHHHHHHHHHhccccCCCCceEEEEEeeCccccc---cce---eec
Q 036076 147 TMVTKRFVFDELAISTLKAKAKAIGEVSRVVVMTAVLWKARILVVQAKHGLLWPSLLNISYNLQRKTG---VIA---RFK 220 (294)
Q Consensus 147 ~~~~~~f~f~~~~i~~Lk~~~~~~~~~S~~d~l~A~iW~~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~---~~~---~~~ 220 (294)
......+.++++..++|++.|. ...+|-+.++.|. |..+.+ +. .. +...+..++..|..-. .+| |..
T Consensus 33 ~~~~~~~~l~~~~~~~l~~~a~-~~~~s~~~~l~aa-~~~~l~-~~-~~---~~~vig~~~~~R~~~~~~~~~G~~~n~l 105 (250)
T d1l5aa2 33 HAVSLSYTLNSQLNHLLLKLAN-ANQIGWPDALVAL-CALYLE-SA-EP---DAPWLWLPFMNRWGSVAANVPGLMVNSL 105 (250)
T ss_dssp CEEEEEEECCHHHHHHHHHHHH-HTTCCHHHHHHHH-HHHHHH-HH-ST---TCCEEEEEECCCTTSGGGGSCSCCCEEE
T ss_pred CceEEEEEECHHHHHHHHHHHH-hcCCCHHHHHHHH-HHHHhh-hh-cc---ceeeccceecCCCChhhhhCeEeEEeee
Confidence 4566778899999999998876 2456788888775 665553 32 11 3457899999997543 333 321
Q ss_pred ---cc-cccCcHHHHHHHHHHHHHHh
Q 036076 221 ---TS-ECKLDFNDSAALLGNSIRET 242 (294)
Q Consensus 221 ---~~-~~~~~l~~~A~~ir~ai~~~ 242 (294)
.. +.+.++.++.+.+++.+.+.
T Consensus 106 P~r~~~~~~~t~~~ll~~v~~~~~~~ 131 (250)
T d1l5aa2 106 PLLRLSAQQTSLGNYLKQSGQAIRSL 131 (250)
T ss_dssp EEECCCCTTCBHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 11 13568899999998888765
No 10
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=26.34 E-value=43 Score=17.45 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.5
Q ss_pred EEEEEEcHHHHHHHHHHHccCCCCCeehhHHHHHHHHHHHHh
Q 036076 150 TKRFVFDELAISTLKAKAKAIGEVSRVVVMTAVLWKARILVV 191 (294)
Q Consensus 150 ~~~f~f~~~~i~~Lk~~~~~~~~~S~~d~l~A~iW~~~~~Ar 191 (294)
...++|+.++.++|.++++. .-+.+..+|=+.+.+|.
T Consensus 3 avslyfsdeqyqklekmane-----eeesvgsyikryilkal 39 (43)
T d1x93a1 3 AVSLYFSDEQYQKLEKMANE-----EEESVGSYIKRYILKAL 39 (43)
T ss_dssp EEEEEECHHHHHHHHHHHHH-----TTSCTTHHHHHHHHHHH
T ss_pred ceeeEecHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHH
Confidence 34689999999999999981 12334456666666664
No 11
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.04 E-value=32 Score=28.41 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred EEEEEeecCeEEEecccccccchhhHHHHHHHHHHHHHh
Q 036076 71 VQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAACR 109 (294)
Q Consensus 71 vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 109 (294)
+|+..++ .|.+ |+.+=|+.+||+.+..++....+...
T Consensus 298 ~q~IV~~-nG~~-g~~~EHS~~DG~~v~~~~~~v~~~~~ 334 (377)
T d1nm8a1 298 LQFIVAE-DGSC-GLVYEHAAAEGPPIVTLLDYVIEYTK 334 (377)
T ss_dssp EEEEEET-TSCE-EEEECTTSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCE-EeeccCCcccHHHHHHHHHHHHHHhh
Confidence 7888888 5555 88999999999999998877666554
No 12
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.55 E-value=29 Score=28.82 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=28.8
Q ss_pred EEEEEeecCeEEEecccccccchhhHHHHHHHHHHHHH
Q 036076 71 VQLNMFDCGGLAIGVPLSHKVADGFVIFTFFQAWAAAC 108 (294)
Q Consensus 71 vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~ 108 (294)
+|+..++ .|.+ |+.+=|+.+||+.+..++....+..
T Consensus 301 ~q~IV~~-nG~~-G~~~EHS~~DG~~~~~l~~~i~~~~ 336 (382)
T d1xl7a1 301 YNLISFA-NGIF-GCCCDHAPYDAMVMVNIAHYVDERV 336 (382)
T ss_dssp CEEEECT-TSCE-EEEECSSSCCTHHHHHHHHHHHHHH
T ss_pred eeEEEeC-CCCE-EEEeeCCchhHHHHHHHHHHHHHHH
Confidence 6788888 5555 8889999999999998887766544
Done!