BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036078
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68FT1|COQ9_RAT Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Rattus
norvegicus GN=Coq9 PE=2 SV=2
Length = 312
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 110/207 (53%), Gaps = 27/207 (13%)
Query: 96 QARVLEASLRHVAKHGWGEAAMIAGARDF--------------------FMDDCLQRLID 135
Q R+L A+L V HGW A+ GA+ F+ C RL
Sbjct: 94 QHRILTAALEFVPDHGWTAEAIAEGAQSLGLSSAAASMFGSDGSELILHFVTQCNARLNH 153
Query: 136 RIDSGEDLKDLIPSQR------ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQ 189
++ + L L +++ + V RL M PYI WP+ALSI P N+P S
Sbjct: 154 VLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALSILLLPQNIPPSLSL 213
Query: 190 RAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRD 249
+VD++WH GD+++D +WY +R VL GIY+TTE+ M+ DSSPDF DT RFLD+R+ D
Sbjct: 214 LTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLDNRIND 273
Query: 250 AFDLKKTFQEATYLAEAVGAG-MGSSL 275
A ++ T ++ EA+ G MG+++
Sbjct: 274 AMNMGHTAKQVKSTGEALVQGLMGAAV 300
>sp|Q8K1Z0|COQ9_MOUSE Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Mus musculus
GN=Coq9 PE=1 SV=1
Length = 313
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 27/207 (13%)
Query: 96 QARVLEASLRHVAKHGWGEAAMIAGARDF--------------------FMDDCLQRLID 135
Q R+L A+L V HGW A+ GA+ F+ C RL
Sbjct: 95 QHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSAAASMFGSDGSELILHFVTQCNARLNQ 154
Query: 136 RIDSGEDLKDLIPSQR------ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQ 189
++ + L L +++ + V RL M PYI WP+ALSI P N+P S
Sbjct: 155 VLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALSILLLPHNIPPSLNL 214
Query: 190 RAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRD 249
+VD++WH GD+++D +WY +R VL GIY+TTE+ M+ DSSPDF DT RFL++R+ D
Sbjct: 215 LTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRIND 274
Query: 250 AFDLKKTFQEATYLAEAVGAG-MGSSL 275
A ++ T ++ EA+ G MG+++
Sbjct: 275 AMNMGHTAKQVKSTGEALVQGLMGAAV 301
>sp|Q5RJV0|COQ9_XENTR Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Xenopus
tropicalis GN=coq9 PE=2 SV=1
Length = 317
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 27/207 (13%)
Query: 96 QARVLEASLRHVAKHGWGEAAMIAGARDF--------------------FMDDCLQRLID 135
Q R+L A+L+ V GW A+ GA+ F+ C +L +
Sbjct: 99 QQRILSAALQFVPDFGWSADAIAEGAKSLDMSAAAAGMFEDGGSELVLHFVTQCNSQLTE 158
Query: 136 RIDSGEDLKDLIPSQR------ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQ 189
++ + L L S++ + V RL M PYI +WPQAL + P N+P+S K
Sbjct: 159 LLEEEQKLVQLGTSEKKPTTQFLRDAVEARLRMHIPYIEQWPQALGMLLLPRNIPSSLKL 218
Query: 190 RAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRD 249
+VD+IWH GD+++D+ WY +R VL GIY+TTE+ ML DSSPDF DT +FL++R+ +
Sbjct: 219 LTAMVDDIWHYAGDQSTDVSWYTRRAVLTGIYNTTELVMLQDSSPDFEDTWKFLENRISE 278
Query: 250 AFDLKKTFQEATYLAEAVGAG-MGSSL 275
A + + ++ EAV G MG+++
Sbjct: 279 AMTMGTSVKQVASTGEAVIQGLMGAAV 305
>sp|O75208|COQ9_HUMAN Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Homo sapiens
GN=COQ9 PE=1 SV=1
Length = 318
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 139/294 (47%), Gaps = 51/294 (17%)
Query: 25 RLLP--NLRQITCSSRFSTSTVNPQSGPNQQVNNEAPNFTDSKTTSSSSAAEEARDARSH 82
R LP RQ F S V +S Q+ + PN + S+ S + AE+ SH
Sbjct: 21 RCLPVARCRQALVPRAFHASAVGLRSSDEQK--QQPPN-SFSQQHSETQGAEKPDPESSH 77
Query: 83 KRERPRVVEYRDE--------------QARVLEASLRHVAKHGWGEAAMIAGARDF---- 124
R Y D+ Q R+L A+L V HGW A+ GA+
Sbjct: 78 SPPR-----YTDQGGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEAIAEGAQSLGLSS 132
Query: 125 ----------------FMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEM 162
F+ C RL ++ + L L +++ + V RL M
Sbjct: 133 AAASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRM 192
Query: 163 QAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYS 222
PYI WP+ALSI P N+P+S +VD++WH GD+++D +WY +R +L IY+
Sbjct: 193 LIPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNWYTRRAMLAAIYN 252
Query: 223 TTEIYMLTDSSPDFCDTSRFLDDRVRDAFDLKKTFQEATYLAEAVGAG-MGSSL 275
TTE+ M+ DSSPDF DT RFL++RV DA ++ T ++ EA+ G MG+++
Sbjct: 253 TTELVMMQDSSPDFEDTWRFLENRVNDAMNMGHTAKQVKSTGEALVQGLMGAAV 306
>sp|Q5PPX7|COQ9B_XENLA Ubiquinone biosynthesis protein COQ9-B, mitochondrial OS=Xenopus
laevis GN=coq9-b PE=2 SV=1
Length = 293
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 41/250 (16%)
Query: 67 TSSSSAAEEARDARSHKRERPRVVEYRDE--------------QARVLEASLRHVAKHGW 112
+SSS+ AE A +++ Y D+ Q R+L A+L+ V GW
Sbjct: 32 SSSSTHAETPEHAEEQYQQQQSPPRYTDQAGEESEDYESEEQLQQRILTAALQFVPDFGW 91
Query: 113 GEAAMIAGARDF--------------------FMDDCLQRLIDRIDSGEDLKDLIPSQR- 151
A+ GA+ F+ C +L + ++ L L S++
Sbjct: 92 SADAIAEGAKSLDMSAAAGGMFEDGGSELVLHFVTQCNLQLTELLEKEHKLVQLGTSEKK 151
Query: 152 -----ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDEAS 206
+ V+ RL M PYI +WPQAL + P N+P+S K + +VD++WH GD+++
Sbjct: 152 PTAQFLRDAVKARLRMHIPYIEQWPQALGMLLLPRNIPSSLKLLSAMVDDMWHYAGDQST 211
Query: 207 DIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRDAFDLKKTFQEATYLAEA 266
D+ WY R VL GIY++TE+ ML DSSPDF DT +FL++R+ +A + + ++ EA
Sbjct: 212 DVSWYTSRAVLTGIYNSTELVMLQDSSPDFEDTWKFLENRISEAMTMGNSMKQVASTGEA 271
Query: 267 VGAG-MGSSL 275
V G MG+++
Sbjct: 272 VIQGLMGAAV 281
>sp|Q2NL34|COQ9_BOVIN Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Bos taurus
GN=COQ9 PE=2 SV=1
Length = 319
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 27/207 (13%)
Query: 96 QARVLEASLRHVAKHGWGEAAMIAGARDF--------------------FMDDCLQRLID 135
Q R+L A+L V HGW A+ GA+ F+ C RL
Sbjct: 101 QHRILTAALEFVPTHGWTAEAIAEGAQSLGLSSAAASMFGDDGSELILHFVTQCNARLTH 160
Query: 136 RIDSGEDLKDLIPSQR------ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQ 189
++ + L L +++ + V RL M PYI WP+A SI P N+P S
Sbjct: 161 VLEEEQKLVQLGQAEKKKTDKFLRDAVETRLRMLIPYIQHWPRAFSILMLPHNIPPSLNL 220
Query: 190 RAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRD 249
+VD++WH GD+++D +WY +R VL GIY+TTE+ M+ DSSPDF DT RFL++R+ D
Sbjct: 221 LTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRISD 280
Query: 250 AFDLKKTFQEATYLAEAVGAG-MGSSL 275
A ++ T ++ EA+ G MG+++
Sbjct: 281 AMNMGHTAKQVKSTGEALVQGLMGAAV 307
>sp|Q3B8B2|COQ9A_XENLA Ubiquinone biosynthesis protein COQ9-A, mitochondrial OS=Xenopus
laevis GN=coq9-a PE=2 SV=2
Length = 317
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 127/258 (49%), Gaps = 46/258 (17%)
Query: 59 PNFTDSKTTSSSSAAEEARDARSHKRERPRVVEYRDE--------------QARVLEASL 104
P F+ S T + + A + K+ PR Y D+ Q ++L A+L
Sbjct: 53 PPFSASSTHAETQG--HAEEQYQQKQPPPR---YTDQAGEESEGYESEEQLQQQILSAAL 107
Query: 105 RHVAKHGWGEAAMIAGARDF--------------------FMDDCLQRLIDRIDSGEDLK 144
+ V GW A+ GA+ F+ C +L + ++ + L
Sbjct: 108 QFVPDFGWSADAIAEGAKSLDMSAAAAGMFEDGGSELILHFVTQCNLQLTELLEKEQKLV 167
Query: 145 DLIPSQR------ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIW 198
L S++ + V RL M PYI WPQAL + P N+P+S K +VD+IW
Sbjct: 168 QLGTSEKKPTAQFLRDAVEARLRMHIPYIEHWPQALGMLLLPRNIPSSLKLLTAMVDDIW 227
Query: 199 HAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRDAFDLKKTFQ 258
H GD+++D+ WY +R VL GIY+TTE+ ML DSSPDF DT +FL++R+ +A + + +
Sbjct: 228 HYAGDQSTDVSWYTRRAVLTGIYNTTELVMLQDSSPDFEDTWKFLENRISEAMTMGDSVK 287
Query: 259 EATYLAEAVGAG-MGSSL 275
+ EAV G MG+++
Sbjct: 288 QVASTGEAVIQGLMGAAV 305
>sp|Q86HS0|COQ9_DICDI Probable ubiquinone biosynthesis protein coq9, mitochondrial
OS=Dictyostelium discoideum GN=coq9 PE=3 SV=2
Length = 307
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 29/207 (14%)
Query: 96 QARVLEASLRHVAKHGWGEAAM---------------IAGARD------FFMDDCLQRLI 134
+ ++LE SL++V +GW A+ I G +F+ C L+
Sbjct: 100 KIKILENSLKYVNSYGWTSEAVSKACIEMGYPPITQGILGEDSAYELALYFVTKCNTDLM 159
Query: 135 DRIDSGED-----LKDLIPSQRISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQ 189
++ E+ L L +++ +++RL M P+I +W +A+ + A P N+ S
Sbjct: 160 IKLSDAENSEQQLLSGLSKKEKVKLALKLRLSMIKPFIGRWSEAMQLLANPKNIVNSSPS 219
Query: 190 RAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRD 249
LVD IW+ VGD++SD DWY KR +L +Y++ E++ML+D+S D +T RF+DDRV
Sbjct: 220 MLTLVDNIWYLVGDKSSDFDWYAKRGLLIALYTSAELFMLSDTSVDHSNTWRFVDDRVD- 278
Query: 250 AFDLKKTFQEATYLAEAVGAGMGSSLQ 276
DL KT + + E VG + + LQ
Sbjct: 279 --DLIKTIKFKNDIEETVGITLNTFLQ 303
>sp|Q8MKN0|COQ9_DROME Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Drosophila
melanogaster GN=Coq9 PE=1 SV=1
Length = 326
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 27/183 (14%)
Query: 97 ARVLEASLRHVAKHGWGEAAMIAGARD--------------------FFMDDCLQRLID- 135
A++L+A+L+HV + GW A+I GA + F C +L++
Sbjct: 111 AKILDAALQHVPQQGWTRQAIILGAEESGYPSVVHGMFPEGGFALVSHFNGKCNAQLVES 170
Query: 136 ---RIDSG-EDLKDLIPSQRISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQRA 191
+ D G ++++D P + + VR RLEM PY + WPQA+++ AQP + PT+ Q
Sbjct: 171 LQQKTDGGKQEVED--PLDFLVQAVRQRLEMVTPYKTHWPQAMALLAQPQHAPTALAQVL 228
Query: 192 MLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRDAF 251
LVD+I + GD + D WY +R L I TE+Y L D SP T FL R+ +A
Sbjct: 229 TLVDDICYYSGDRSVDFGWYTRRVGLATIMKMTELYFLQDKSPGHAQTWEFLKSRMDEAV 288
Query: 252 DLK 254
L+
Sbjct: 289 QLQ 291
>sp|O13850|COQ9_SCHPO Ubiquinone biosynthesis protein coq9, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coq9 PE=3 SV=1
Length = 250
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 80 RSHKRERPRVVEYRDEQARVLEASLRHVAKHGWGEAAMIAGARDFFMDDCLQRL-----I 134
R + E + ++A +LE +L HV + G+ E A++ G + + + L +
Sbjct: 32 RGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSNLSKALFPSGPM 91
Query: 135 DRID-----SGEDLKDLIP--------SQRISKLVRIRLEMQAPYISKWPQALSIQAQPL 181
D I L L P S R+ +L+ RL+ + PQ ++I P
Sbjct: 92 DLISYFFLKQRYALSSLKPHLTTIPETSGRVVQLIWSRLQGNRDIVQHLPQMIAICTYPS 151
Query: 182 NVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFCDTSR 241
N+ S A L DEI + D+++D WY KR + IYS +E++M D+SP+F T
Sbjct: 152 NLRKSLSSLAELSDEILYLAQDKSADFQWYTKRAAISAIYSASELFMSRDTSPNFEATYN 211
Query: 242 FLDDRVRDA 250
F+ R++ A
Sbjct: 212 FVQHRIQHA 220
>sp|Q6YMS4|POLG_DEN3S Genome polyprotein OS=Dengue virus type 3 (strain Sri
Lanka/1266/2000) GN=pol PE=3 SV=1
Length = 3390
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 159 RLEMQAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLG 218
RL P ++K + ++I+A+P F + +++ +GD A I+WY K + +G
Sbjct: 628 RLITANPVVTKKEEPVNIEAEP-----PFGESNIVI-----GIGDNALKINWYKKGSSIG 677
Query: 219 GIYSTTE-----IYMLTDSSPDFCDTSRFLD 244
++ TE + +L D++ DF L+
Sbjct: 678 KMFEATERGARRMAILGDTAWDFGSVGGVLN 708
>sp|P33802|KITH_AHV1W Thymidine kinase OS=Alcelaphine herpesvirus type 1 (strain WC11)
GN=TK PE=3 SV=1
Length = 686
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 176 IQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPD 235
+ + PL VP S + + +D +H+V + ++I YV++ ++ +++ + ++ +++ +
Sbjct: 601 VTSAPLIVPASSSELIVTLDGTFHSVTIDMTEIRQYVRQEIIEALWNASHVFESLETTYN 660
Query: 236 -FCDTSRFLDDRVR 248
+ D RF D +R
Sbjct: 661 RYKDVYRFTDQSIR 674
>sp|O36372|GH_ALHV1 Glycoprotein H OS=Alcelaphine herpesvirus 1 (strain C500) GN=22
PE=3 SV=1
Length = 733
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 176 IQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLTDSSPD 235
+ + PL VP S + + +D +H+V + ++I YV++ ++ +++ + ++ +++ +
Sbjct: 32 VTSAPLIVPASSSELIVTLDGTFHSVTIDMTEIRQYVRQEIIEALWNASHVFESLETTYN 91
Query: 236 -FCDTSRFLDDRVR 248
+ D RF D +R
Sbjct: 92 RYKDVYRFTDQSIR 105
>sp|Q5NUA6|NF2L2_BOVIN Nuclear factor erythroid 2-related factor 2 OS=Bos taurus GN=NFE2L2
PE=2 SV=2
Length = 607
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 111 GWGEAAMIAGARDFFMDDCLQRLIDRIDSGEDLKDLIPSQRISKLVR-IRLEMQAPYISK 169
+ + A I A D + DDC+Q L + +D + + S LV I +++P +
Sbjct: 101 NYSQVAPIPKADDLYFDDCMQLLAETFPFVDD--NEVSSATFQSLVPDIPSHIESPVFTA 158
Query: 170 WPQALSIQAQPLNVPTSFKQRAMLVDEIWHAV 201
PQA S + + V T+ ++++W +
Sbjct: 159 PPQAQSPETLIVQVATAVLDDMQDIEQVWEEL 190
>sp|Q503N2|SPC24_DANRE Kinetochore protein Spc24 OS=Danio rerio GN=spc24 PE=2 SV=2
Length = 202
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 130 LQRLIDRIDSGEDLKDLIPS-----QRISKLVRIRLEMQA-PYISKWPQALSIQAQPLNV 183
+Q L +D ED ++IPS Q SK+ +I+LE P+I K + P+N+
Sbjct: 123 IQTLQQEVD--EDTTEVIPSAIYVAQLYSKVTKIKLEFDTEPHILKGVHYGADVVTPINI 180
Query: 184 PTSFKQRAMLVDEIWHAVGDE 204
TS + + DE+W V E
Sbjct: 181 DTSTRTPCEVSDELWSLVKTE 201
>sp|Q11058|Y1260_MYCTU Uncharacterized protein Rv1260/MT1298 OS=Mycobacterium tuberculosis
GN=Rv1260 PE=4 SV=1
Length = 372
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 60 NFTDSKTTSSSSAAE--EARDARSHKRERPRVVEYRDEQARVLEASLRHVAKHGWGEAAM 117
++ DS SA EAR A + R+ +YRD +A+ E R +A+ GW A +
Sbjct: 199 HYGDSTMAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQFAELQ-RRMAEDGWVRAQL 256
Query: 118 IAGAR---DFFMDDCLQRLIDRIDSG 140
+ R DF+ D+ Q L+DR G
Sbjct: 257 LHYMRSAPDFYFDEMSQILMDRWSRG 282
>sp|Q7VRJ3|UBID_BLOFL 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Blochmannia
floridanus GN=ubiD PE=3 SV=1
Length = 499
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 134 IDRIDSGEDLKDLIPSQRISKLVRIRLEMQAP-----YISKWPQALSIQAQPLNVPTSFK 188
I RI+ G +K+++ + I KL+ E Q P ++SK P I LN+P
Sbjct: 67 ISRIELGIGIKNILSLRDIGKLLAFLKEPQIPTGFRDFLSKIPNFRQI----LNMPIKHV 122
Query: 189 QRAMLVDEIWHAVGDEASDID 209
A+ + IW + A DID
Sbjct: 123 SNAVCQENIW----NNAQDID 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,620,893
Number of Sequences: 539616
Number of extensions: 3802329
Number of successful extensions: 12030
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12000
Number of HSP's gapped (non-prelim): 33
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)