Query 036078
Match_columns 285
No_of_seqs 110 out of 348
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni7_A Bacterial regulatory pr 99.9 1.7E-21 5.8E-26 168.9 13.6 165 93-257 6-192 (213)
2 2qib_A TETR-family transcripti 97.9 0.0005 1.7E-08 58.5 15.8 159 93-252 12-191 (231)
3 3g1o_A Transcriptional regulat 97.7 0.0016 5.5E-08 56.0 15.9 83 92-174 41-144 (255)
4 2rae_A Transcriptional regulat 97.7 0.0015 5E-08 53.7 14.9 140 93-234 16-180 (207)
5 3mnl_A KSTR, transcriptional r 97.6 0.0014 4.7E-08 53.5 13.9 153 93-248 19-194 (203)
6 3crj_A Transcription regulator 97.6 0.0019 6.4E-08 53.7 14.5 73 91-163 11-100 (199)
7 3q0w_A HTH-type transcriptiona 97.6 0.0025 8.5E-08 54.2 15.5 83 92-174 42-145 (236)
8 3bni_A Putative TETR-family tr 97.6 0.00013 4.3E-09 62.2 7.2 75 91-165 40-135 (229)
9 2qko_A Possible transcriptiona 97.6 0.00093 3.2E-08 55.7 12.0 78 93-170 27-125 (215)
10 3c07_A Putative TETR-family tr 97.6 0.0032 1.1E-07 55.8 16.1 159 93-252 40-226 (273)
11 3nrg_A TETR family transcripti 97.6 0.0066 2.3E-07 49.8 17.0 81 93-173 12-112 (217)
12 3on2_A Probable transcriptiona 97.5 0.0066 2.3E-07 48.9 16.6 90 92-181 10-119 (199)
13 3bjb_A Probable transcriptiona 97.5 0.003 1E-07 52.9 15.0 74 93-166 21-113 (207)
14 3e7q_A Transcriptional regulat 97.5 0.0022 7.6E-08 52.4 13.1 76 93-168 13-108 (215)
15 3f1b_A TETR-like transcription 97.4 0.0085 2.9E-07 48.5 16.0 86 93-179 13-118 (203)
16 3rd3_A Probable transcriptiona 97.4 0.00095 3.2E-08 54.0 9.7 75 93-167 9-103 (197)
17 3vib_A MTRR; helix-turn-helix 97.4 0.0065 2.2E-07 50.3 15.0 76 91-166 7-102 (210)
18 3g7r_A Putative transcriptiona 97.4 0.00061 2.1E-08 57.5 8.5 75 91-166 32-126 (221)
19 3ppb_A Putative TETR family tr 97.3 0.015 5E-07 46.6 15.8 75 93-168 8-102 (195)
20 2nx4_A Transcriptional regulat 97.3 0.0066 2.3E-07 50.0 13.9 70 93-164 9-98 (194)
21 3kz9_A SMCR; transcriptional r 97.3 0.014 4.7E-07 47.2 15.5 78 92-170 15-112 (206)
22 3dcf_A Transcriptional regulat 97.3 0.0035 1.2E-07 51.4 12.1 79 92-171 29-127 (218)
23 3on4_A Transcriptional regulat 97.3 0.0031 1.1E-07 50.6 11.5 73 93-166 9-103 (191)
24 3jsj_A Putative TETR-family tr 97.3 0.01 3.6E-07 48.0 14.6 71 93-165 8-98 (190)
25 3bru_A Regulatory protein, TET 97.3 0.0072 2.5E-07 49.9 13.8 77 91-167 27-123 (222)
26 3qbm_A TETR transcriptional re 97.3 0.0066 2.2E-07 49.0 13.2 154 93-249 6-194 (199)
27 3pas_A TETR family transcripti 97.2 0.011 3.7E-07 47.5 14.0 78 93-171 7-104 (195)
28 2id3_A Putative transcriptiona 97.2 0.0083 2.9E-07 50.7 13.5 74 93-166 39-126 (225)
29 2dg7_A Putative transcriptiona 97.2 0.016 5.5E-07 47.2 14.8 76 93-170 6-101 (195)
30 3kkc_A TETR family transcripti 97.2 0.0053 1.8E-07 49.1 11.6 78 93-174 11-102 (177)
31 3knw_A Putative transcriptiona 97.1 0.0067 2.3E-07 49.6 12.1 70 92-162 12-101 (212)
32 2g3b_A Putative TETR-family tr 97.1 0.0078 2.7E-07 50.3 12.8 70 93-163 2-91 (208)
33 3he0_A Transcriptional regulat 97.1 0.007 2.4E-07 48.9 12.1 78 93-170 10-106 (196)
34 3cjd_A Transcriptional regulat 97.1 0.014 4.9E-07 48.3 14.2 84 92-175 10-114 (198)
35 3him_A Probable transcriptiona 97.1 0.036 1.2E-06 44.8 16.1 77 93-170 15-111 (211)
36 3qkx_A Uncharacterized HTH-typ 97.1 0.013 4.4E-07 46.9 13.1 78 93-171 7-104 (188)
37 2oer_A Probable transcriptiona 97.1 0.0073 2.5E-07 50.5 12.0 73 92-164 22-114 (214)
38 2f07_A YVDT; helix-turn-helix, 97.0 0.057 1.9E-06 44.4 17.0 75 93-168 9-103 (197)
39 3kkd_A Transcriptional regulat 97.0 0.0038 1.3E-07 52.8 9.8 38 91-128 32-79 (237)
40 2np5_A Transcriptional regulat 97.0 0.013 4.4E-07 48.6 12.6 67 94-162 9-95 (203)
41 3aqt_A Bacterial regulatory pr 97.0 0.0026 8.7E-08 54.7 8.5 74 93-167 45-138 (245)
42 3mvp_A TETR/ACRR transcription 97.0 0.011 3.9E-07 48.3 12.1 39 90-128 22-70 (217)
43 3lhq_A Acrab operon repressor 97.0 0.043 1.5E-06 44.6 15.5 74 93-166 13-106 (220)
44 3rh2_A Hypothetical TETR-like 97.0 0.012 4E-07 48.6 12.2 81 94-174 3-101 (212)
45 2of7_A Putative TETR-family tr 96.9 0.014 4.7E-07 50.6 13.0 80 93-174 47-145 (260)
46 2zb9_A Putative transcriptiona 96.9 0.014 4.7E-07 48.3 12.4 72 93-166 22-109 (214)
47 3dpj_A Transcription regulator 96.9 0.014 4.9E-07 47.2 12.1 71 93-164 7-97 (194)
48 3hta_A EBRA repressor; TETR fa 96.9 0.011 3.8E-07 49.7 11.7 147 94-247 28-197 (217)
49 1zk8_A Transcriptional regulat 96.9 0.0032 1.1E-07 50.8 8.0 73 95-167 9-99 (183)
50 4ich_A Transcriptional regulat 96.9 0.017 5.8E-07 51.7 13.5 79 90-169 116-214 (311)
51 3dew_A Transcriptional regulat 96.9 0.084 2.9E-06 42.4 16.3 87 93-179 7-111 (206)
52 3frq_A Repressor protein MPHR( 96.8 0.0086 2.9E-07 48.8 10.4 71 96-166 10-97 (195)
53 3bqz_B HTH-type transcriptiona 96.8 0.027 9.2E-07 45.3 13.0 65 95-160 3-87 (194)
54 2g7s_A Transcriptional regulat 96.8 0.021 7.1E-07 45.7 12.0 74 93-167 7-100 (194)
55 2hyj_A Putative TETR-family tr 96.8 0.056 1.9E-06 44.6 15.0 71 93-164 11-101 (200)
56 3nnr_A Transcriptional regulat 96.8 0.0087 3E-07 50.2 10.0 82 93-174 4-103 (228)
57 3c2b_A Transcriptional regulat 96.7 0.035 1.2E-06 45.8 13.4 77 91-167 12-108 (221)
58 2fd5_A Transcriptional regulat 96.7 0.014 4.7E-07 47.0 10.6 71 93-163 6-94 (180)
59 2qtq_A Transcriptional regulat 96.7 0.049 1.7E-06 44.2 14.1 77 93-170 15-112 (213)
60 3s5r_A Transcriptional regulat 96.7 0.13 4.3E-06 42.0 16.3 80 93-172 9-108 (216)
61 1pb6_A Hypothetical transcript 96.7 0.11 3.6E-06 42.3 15.7 78 93-170 17-112 (212)
62 2zcm_A Biofilm operon icaabcd 96.7 0.031 1.1E-06 45.3 12.4 66 95-160 8-91 (192)
63 3f0c_A TETR-molecule A, transc 96.7 0.032 1.1E-06 45.7 12.6 73 93-166 10-102 (216)
64 2hku_A A putative transcriptio 96.7 0.035 1.2E-06 46.0 12.9 80 93-174 19-118 (215)
65 2dg8_A Putative TETR-family tr 96.6 0.022 7.6E-07 46.5 11.4 35 94-128 9-53 (193)
66 3lsj_A DEST; transcriptional r 96.6 0.015 5.3E-07 48.1 10.2 83 93-175 10-112 (220)
67 3ccy_A Putative TETR-family tr 96.5 0.087 3E-06 43.1 14.4 78 90-168 10-107 (203)
68 3loc_A HTH-type transcriptiona 96.5 0.032 1.1E-06 45.4 11.5 78 93-170 17-112 (212)
69 2w53_A Repressor, SMet; antibi 96.5 0.13 4.5E-06 42.5 15.5 72 93-164 10-101 (219)
70 3npi_A TETR family regulatory 96.5 0.08 2.7E-06 45.2 14.4 82 93-174 17-117 (251)
71 3eup_A Transcriptional regulat 96.5 0.023 8E-07 45.9 10.4 73 93-166 10-102 (204)
72 2eh3_A Transcriptional regulat 96.5 0.027 9.3E-07 45.4 10.6 35 94-128 2-46 (179)
73 2np3_A Putative TETR-family re 96.4 0.0099 3.4E-07 49.2 8.2 36 93-128 29-74 (212)
74 1vi0_A Transcriptional regulat 96.4 0.15 5E-06 42.3 15.2 74 93-167 7-100 (206)
75 3egq_A TETR family transcripti 96.4 0.023 8E-07 45.1 9.8 35 94-128 4-48 (170)
76 2gfn_A HTH-type transcriptiona 96.4 0.0088 3E-07 50.0 7.5 72 92-163 7-98 (209)
77 3qqa_A CMER; alpha-helical, he 96.4 0.013 4.4E-07 48.0 8.3 74 93-166 18-112 (216)
78 3v6g_A Probable transcriptiona 96.4 0.042 1.4E-06 46.2 11.7 36 93-128 13-58 (208)
79 1ui5_A A-factor receptor homol 96.3 0.065 2.2E-06 44.8 12.8 68 93-161 8-95 (215)
80 3anp_C Transcriptional repress 96.3 0.062 2.1E-06 44.0 12.1 72 94-166 9-100 (204)
81 2id6_A Transcriptional regulat 96.3 0.085 2.9E-06 43.3 13.0 73 94-166 5-98 (202)
82 3col_A Putative transcription 96.3 0.083 2.8E-06 42.2 12.5 77 93-169 9-106 (196)
83 2hxo_A Putative TETR-family tr 96.2 0.043 1.5E-06 47.7 11.3 130 94-225 16-162 (237)
84 2fq4_A Transcriptional regulat 96.2 0.094 3.2E-06 42.7 12.7 72 93-164 11-96 (192)
85 3b81_A Transcriptional regulat 96.2 0.014 4.9E-07 47.3 7.5 36 93-128 10-55 (203)
86 3bhq_A Transcriptional regulat 96.1 0.17 5.8E-06 41.7 14.1 71 93-163 11-103 (211)
87 2yve_A Transcriptional regulat 96.1 0.038 1.3E-06 45.1 9.9 69 94-163 4-92 (185)
88 2wui_A MEXZ, transcriptional r 96.1 0.47 1.6E-05 39.0 16.6 73 92-164 9-97 (210)
89 3lwj_A Putative TETR-family tr 96.1 0.039 1.3E-06 44.7 9.7 38 91-128 9-56 (202)
90 4hku_A LMO2814 protein, TETR t 96.1 0.011 3.9E-07 48.1 6.4 67 95-161 8-94 (178)
91 2guh_A Putative TETR-family tr 96.1 0.023 8E-07 47.9 8.5 31 93-123 38-68 (214)
92 3fiw_A Putative TETR-family tr 96.1 0.14 4.8E-06 43.5 13.5 80 95-174 26-122 (211)
93 2iai_A Putative transcriptiona 96.0 0.03 1E-06 47.2 9.1 77 94-170 30-125 (230)
94 3vpr_A Transcriptional regulat 95.8 0.18 6.1E-06 40.8 12.7 78 94-171 3-98 (190)
95 3cwr_A Transcriptional regulat 95.8 0.26 9.1E-06 39.5 13.5 44 93-136 16-71 (208)
96 2xdn_A HTH-type transcriptiona 95.7 0.35 1.2E-05 39.6 14.3 72 93-164 10-101 (210)
97 2hxi_A Putative transcriptiona 95.7 0.026 8.7E-07 49.3 7.4 76 95-170 30-120 (241)
98 4aci_A HTH-type transcriptiona 95.7 0.077 2.6E-06 42.7 9.8 36 93-128 13-58 (191)
99 3nxc_A HTH-type protein SLMA; 95.6 0.12 4.1E-06 42.0 10.8 75 93-168 23-118 (212)
100 2iu5_A DHAS, YCEG, HTH-type dh 95.6 0.3 1E-05 39.6 13.3 36 93-128 12-57 (195)
101 2q24_A Putative TETR family tr 95.5 0.03 1E-06 45.6 6.8 75 93-168 14-106 (194)
102 1sgm_A Putative HTH-type trans 95.5 0.077 2.6E-06 42.3 9.1 72 94-166 6-98 (191)
103 3gzi_A Transcriptional regulat 95.5 0.39 1.3E-05 39.1 13.6 36 93-128 16-61 (218)
104 1z0x_A Transcriptional regulat 95.3 0.41 1.4E-05 40.5 13.6 74 95-168 6-94 (220)
105 2ibd_A Possible transcriptiona 95.2 0.019 6.4E-07 47.4 4.7 75 93-168 13-107 (204)
106 3vp5_A Transcriptional regulat 95.2 0.14 4.9E-06 41.8 10.1 72 93-166 11-102 (189)
107 2gen_A Probable transcriptiona 95.1 0.48 1.7E-05 38.6 13.0 72 94-166 7-98 (197)
108 1t33_A Putative transcriptiona 95.1 0.13 4.5E-06 42.4 9.5 73 93-166 11-113 (224)
109 2pz9_A Putative regulatory pro 95.1 0.29 1E-05 40.9 11.8 36 93-128 29-74 (226)
110 2g7l_A TETR-family transcripti 95.1 0.1 3.5E-06 45.5 9.3 75 94-168 19-109 (243)
111 3cdl_A Transcriptional regulat 94.8 0.05 1.7E-06 44.8 6.2 71 93-163 8-97 (203)
112 2jj7_A Hemolysin II regulatory 94.5 0.11 3.8E-06 41.6 7.5 76 93-168 6-99 (186)
113 4ac0_A Tetracycline repressor 94.3 0.086 2.9E-06 44.9 6.7 76 95-170 4-96 (202)
114 2vpr_A Tetracycline resistance 94.3 0.29 9.9E-06 41.5 10.0 75 95-169 5-96 (207)
115 2o7t_A Transcriptional regulat 94.3 0.084 2.9E-06 43.1 6.3 71 93-163 7-97 (199)
116 3bqy_A Putative TETR family tr 94.2 0.64 2.2E-05 39.2 12.0 75 96-170 4-95 (209)
117 2y2z_A SIM16, SIMR, putative r 94.2 0.83 2.8E-05 40.5 13.1 76 93-168 26-116 (267)
118 2opt_A Actii protein; helical 94.2 0.41 1.4E-05 41.5 10.9 74 95-168 7-95 (234)
119 2rek_A Putative TETR-family tr 94.2 0.014 4.8E-07 47.7 1.3 74 90-166 12-105 (199)
120 3ljl_A Transcriptional regulat 94.0 0.074 2.5E-06 42.4 5.3 36 93-128 13-58 (156)
121 2zcx_A SCO7815, TETR-family tr 93.9 0.57 2E-05 39.8 11.1 36 93-128 22-67 (231)
122 2ras_A Transcriptional regulat 93.8 0.027 9.3E-07 46.3 2.5 69 93-162 10-98 (212)
123 2i10_A Putative TETR transcrip 93.8 0.03 1E-06 46.4 2.7 70 95-164 12-99 (202)
124 2g7g_A RHA04620, putative tran 93.6 1.1 3.8E-05 37.7 12.3 74 95-170 12-100 (213)
125 2oi8_A Putative regulatory pro 93.5 0.71 2.4E-05 38.8 10.9 36 93-128 15-60 (216)
126 2qwt_A Transcriptional regulat 93.5 0.017 5.6E-07 47.6 0.6 74 93-167 12-103 (196)
127 1rkt_A Protein YFIR; transcrip 93.2 2.2 7.5E-05 34.7 13.2 36 93-128 11-56 (205)
128 3o60_A LIN0861 protein; PSI, M 93.2 3 0.0001 34.2 14.3 36 93-128 18-64 (185)
129 2fbq_A Probable transcriptiona 92.9 0.15 5.1E-06 43.2 5.7 72 93-164 6-104 (235)
130 2d6y_A Putative TETR family re 92.5 0.76 2.6E-05 37.7 9.4 36 93-128 7-52 (202)
131 2xpw_A Tetracycline repressor 92.4 0.27 9.3E-06 41.5 6.7 74 95-168 4-94 (207)
132 2hyt_A TETR-family transcripti 92.3 0.29 1E-05 39.9 6.6 69 93-162 11-99 (197)
133 3geu_A Intercellular adhesion 91.8 1.9 6.4E-05 34.3 10.8 36 93-128 2-47 (189)
134 2v57_A TETR family transcripti 90.3 0.48 1.6E-05 37.8 5.8 68 92-162 12-99 (190)
135 3aqb_A Component A of hexapren 29.3 2.5E+02 0.0084 23.4 10.6 104 147-254 6-110 (147)
No 1
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=99.86 E-value=1.7e-21 Score=168.85 Aligned_cols=165 Identities=19% Similarity=0.243 Sum_probs=130.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhc-------CCCCCCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDS-------GEDLKDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~-------~~~l~~l~~rERI~ 153 (285)
+..|++||++|++++.++||+..++.++|++ ||.++ ....+++.... ........+.++|.
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (213)
T 3ni7_A 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIH 85 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 4579999999999999999999999999998 78766 22333322211 11223457899999
Q ss_pred HHHHHHHhhccchhhhHHHHHHhhcCCCCchHH---HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 036078 154 KLVRIRLEMQAPYISKWPQALSIQAQPLNVPTS---FKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLT 230 (285)
Q Consensus 154 ~lL~~RLe~l~P~~e~~~qaLa~lalP~n~~~s---l~~l~~laD~Iw~~AGD~StD~~wYtKRa~La~IY~stel~wL~ 230 (285)
.++..+++.+.+|.+.++.++..+..|.+.... ...++.+++.||..+|+.+.|++||+++..|+++|..++++|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~wl~ 165 (213)
T 3ni7_A 86 HLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFFWMR 165 (213)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHHHHHTCC-------CCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998763 44788999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 036078 231 DSSPDFCDTSRFLDDRVRDAFDLKKTF 257 (285)
Q Consensus 231 D~S~d~~~T~aFLdrRL~~a~~l~~~~ 257 (285)
|.++++.+|++||+++|++++.++..+
T Consensus 166 d~~~~~~~t~~~ld~~l~~~~~~~~~~ 192 (213)
T 3ni7_A 166 DESENSRHTRQFLKRHLTMAAWLGQKV 192 (213)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHC----
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 2
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=97.90 E-value=0.0005 Score=58.53 Aligned_cols=159 Identities=8% Similarity=0.056 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhc-CCCCCCCChHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDS-GEDLKDLIPSQRISKL 155 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~-~~~l~~l~~rERI~~l 155 (285)
+..+++||++|++++.++||...++.++|++ ||.++- ...+++. +.. -.......+.++|..+
T Consensus 12 ~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (231)
T 2qib_A 12 EERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVEPRQGPLGARLLRV 91 (231)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCCSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 5579999999999999999999999999998 787662 2222222 111 1122344678999999
Q ss_pred HHHHHhhccchhhhHHHHHHhhcCCCC--chHHHHH-HHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHHHHHHHhcC
Q 036078 156 VRIRLEMQAPYISKWPQALSIQAQPLN--VPTSFKQ-RAMLVDEIWHAVGDEASDID-WYVKRTVLGGIYSTTEIYMLTD 231 (285)
Q Consensus 156 L~~RLe~l~P~~e~~~qaLa~lalP~n--~~~sl~~-l~~laD~Iw~~AGD~StD~~-wYtKRa~La~IY~stel~wL~D 231 (285)
+..-++....+...+...+.......+ +...... ...+.+.+....|....+.. -+.-+..+ ++.....+.|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~ 170 (231)
T 2qib_A 92 MGRYFDFVDEHGPGFSALMRGGPAVGSTTTNALVDSVRQAAYVQILSHLDVTEPPARLELVVRSWI-SLAESTALLWLDG 170 (231)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHChHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHHHHHH-HHHHHHHHHHhcC
Confidence 888887776665554443332101111 1111111 12333444444453222222 22223333 3333445678876
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 036078 232 SSPDFCDTSRFLDDRVRDAFD 252 (285)
Q Consensus 232 ~S~d~~~T~aFLdrRL~~a~~ 252 (285)
...+.++..+.+.+.+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~ 191 (231)
T 2qib_A 171 RRIPRAELETQLVHDFAALMA 191 (231)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 666666666666666655543
No 3
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=97.69 E-value=0.0016 Score=56.05 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH--------HHhhcC-CCCCCCChHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI--------DRIDSG-EDLKDLIPSQ 150 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~--------~~iD~~-~~l~~l~~rE 150 (285)
-+..+++||++|++++.++||...++.++|+. ||.++ ....++ +.++.. .......+.+
T Consensus 41 ~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (255)
T 3g1o_A 41 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDREN 120 (255)
T ss_dssp CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH
Confidence 35679999999999999999999999999998 78766 222222 122111 1111147889
Q ss_pred HHHHHHHHHHhhccchhhhHHHHH
Q 036078 151 RISKLVRIRLEMQAPYISKWPQAL 174 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~~e~~~qaL 174 (285)
+|..++...++....+...+.-.+
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~ 144 (255)
T 3g1o_A 121 MWRTGINVFFETFGSHKAVTRAGQ 144 (255)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH
Confidence 999999998888877765554444
No 4
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=97.69 E-value=0.0015 Score=53.74 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH----------HHHHHHHHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD----------CLQRLIDRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~----------~~~~L~~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|++ ||.++ ..+.+.+.++.. .....+.++|
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 93 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGDFDAHLAEMRAQLAAQ--PDDIPIVDGL 93 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSHHHHHHHHHHHHHHS--CTTSCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCCHHHHH
Confidence 4579999999999999999999999999998 77666 122233333221 2345688999
Q ss_pred HHHHHHHHhhccchhhhHHHHHHhhcCCCCchHHHH----HHHH-HHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHH
Q 036078 153 SKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFK----QRAM-LVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIY 227 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~qaLa~lalP~n~~~sl~----~l~~-laD~Iw~~AGD~StD~~wYtKRa~La~IY~stel~ 227 (285)
..++..-++....+...++..+........+..... .... +.+.+-...|....+.+--.--..+.++.......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (207)
T 2rae_A 94 TAALLQFNAFPASEEINHRKRMGLILRVPALQAYSVVMYEGWRNVIAEYVASRLGTSPTDHVPRTVGYLLLGVAMSAYEQ 173 (207)
T ss_dssp HHHHHHTTCCCGGGHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999988777666555445444433221111111111 1112 22222233465444433222222344444446678
Q ss_pred HhcCCCC
Q 036078 228 MLTDSSP 234 (285)
Q Consensus 228 wL~D~S~ 234 (285)
|+.+..+
T Consensus 174 ~~~~~~~ 180 (207)
T 2rae_A 174 WLDDDSL 180 (207)
T ss_dssp HHHCTTS
T ss_pred HHhCCCC
Confidence 8887655
No 5
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=97.64 E-value=0.0014 Score=53.46 Aligned_cols=153 Identities=21% Similarity=0.281 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH----hhcC-C--CCCCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR----IDSG-E--DLKDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~----iD~~-~--~l~~l~~rERI~ 153 (285)
+..+++||++|++++.++||...++.+.|+. ||.++ ....+++. +... . ......+.++|.
T Consensus 19 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (203)
T 3mnl_A 19 RERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLN 98 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHCCCGGGTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5569999999999999999999999999998 78776 22222222 1110 1 113456889999
Q ss_pred HHHHHHHhhccchhhhHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHH---hCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 036078 154 KLVRIRLEMQAPYISKWPQALSIQ-AQPLNVPTSFKQRAMLVDEIWHA---VGDEASDIDWYVKRTVLGGIYSTTEIYML 229 (285)
Q Consensus 154 ~lL~~RLe~l~P~~e~~~qaLa~l-alP~n~~~sl~~l~~laD~Iw~~---AGD~StD~~wYtKRa~La~IY~stel~wL 229 (285)
.++..-++....+...+.-.+... ..+................+... .|....+ .-.. -..+.+++......|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~ 176 (203)
T 3mnl_A 99 FMVGKLNRAMQRNPLLTEAMTRAYVFADASAASEVDQVEKLIDSMFARAMANGEPTED-QYHI-ARVISDVWLSNLLAWL 176 (203)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHHC-CCCCHH-HHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHcCCCCCc-cHHH-HHHHHHHHHHHHHHHH
Confidence 999988887776665544333322 22333333333334434444332 2332222 2222 2344566667778888
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 036078 230 TDSSPDFCDTSRFLDDRVR 248 (285)
Q Consensus 230 ~D~S~d~~~T~aFLdrRL~ 248 (285)
.+ ..+..+..+.++.-++
T Consensus 177 ~~-~~~~~~~~~~~~~~~~ 194 (203)
T 3mnl_A 177 TR-RASATDVSKRLDLAVR 194 (203)
T ss_dssp TT-SSCHHHHHHHHHHHHH
T ss_pred cc-CCCHHHHHHHHHHHHH
Confidence 54 3444554444444433
No 6
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=97.61 E-value=0.0019 Score=53.66 Aligned_cols=73 Identities=18% Similarity=0.373 Sum_probs=52.3
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhcC-CCCCCCChHHHHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDSG-EDLKDLIPSQRIS 153 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~~-~~l~~l~~rERI~ 153 (285)
+.+..|++||++|+++..++||...++.++|++ ||+++- ...+++. +... .......+.++|.
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (199)
T 3crj_A 11 TFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDVETTDPEARLN 90 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 345679999999999999999999999999998 887772 2222222 1110 1113457889999
Q ss_pred HHHHHHHhhc
Q 036078 154 KLVRIRLEMQ 163 (285)
Q Consensus 154 ~lL~~RLe~l 163 (285)
.++..-++..
T Consensus 91 ~~~~~~~~~~ 100 (199)
T 3crj_A 91 LLLDELLVKP 100 (199)
T ss_dssp HHHHHHHTGG
T ss_pred HHHHHHHhhc
Confidence 9998877765
No 7
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=97.60 E-value=0.0025 Score=54.22 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCC-CChHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKD-LIPSQ 150 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~-l~~rE 150 (285)
-+..+++||++|++++.++||...++.++|++ ||.++ ....+++ .++....-.. ..+.+
T Consensus 42 ~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (236)
T 3q0w_A 42 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDREN 121 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 35679999999999999999999999999998 77766 2222221 1211101112 47899
Q ss_pred HHHHHHHHHHhhccchhhhHHHHH
Q 036078 151 RISKLVRIRLEMQAPYISKWPQAL 174 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~~e~~~qaL 174 (285)
+|..++..-++....+...+.-.+
T Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~ 145 (236)
T 3q0w_A 122 MWRTGINVFFETFGSHKAVTRAGQ 145 (236)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999998888877765554433
No 8
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=97.59 E-value=0.00013 Score=62.22 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH--------hhcC-CCCCCCChH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR--------IDSG-EDLKDLIPS 149 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~--------iD~~-~~l~~l~~r 149 (285)
.-+..+++||++|++++.++||...++.++|++ ||.++ ....+++. +... .......+.
T Consensus 40 r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (229)
T 3bni_A 40 RSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWR 119 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 335679999999999999999999999999998 78766 22222221 1110 001234678
Q ss_pred HHHHHHHHHHHhhccc
Q 036078 150 QRISKLVRIRLEMQAP 165 (285)
Q Consensus 150 ERI~~lL~~RLe~l~P 165 (285)
++|..++..-++....
T Consensus 120 ~~l~~~~~~~~~~~~~ 135 (229)
T 3bni_A 120 GALDTVLDEYLAMKRT 135 (229)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888877766543
No 9
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=97.56 E-value=0.00093 Score=55.69 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--C----CCCC---CChHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--E----DLKD---LIPSQR 151 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~----~l~~---l~~rER 151 (285)
+..|++||++|++++.++||...++.++|+. ||.++ ....+++..-.. . .... ..+.++
T Consensus 27 ~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (215)
T 2qko_A 27 PERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIHERLGPDPSVVEESGRKPQNLEL 106 (215)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGGGTC---------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHH
Confidence 4579999999999999999999999999998 78776 344444443211 1 1111 246789
Q ss_pred HHHHHHHHHhhccchhhhH
Q 036078 152 ISKLVRIRLEMQAPYISKW 170 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~~ 170 (285)
|..++..-++....+...+
T Consensus 107 l~~~~~~~~~~~~~~~~~~ 125 (215)
T 2qko_A 107 AIEYMQGLFGRITRDRTGY 125 (215)
T ss_dssp HHHHHHHHTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhCcHHH
Confidence 9999988887766555433
No 10
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=97.56 E-value=0.0032 Score=55.76 Aligned_cols=159 Identities=15% Similarity=0.208 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhcC-CC-C-CCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDSG-ED-L-KDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~~-~~-l-~~l~~rERI~ 153 (285)
+..+++||++|++++.++||...++.++|+. ||.++- ...+++. +... .. + ....+.++|.
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVREVLARETDLEARLA 119 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTTHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 4579999999999999999999999999998 787662 2222222 1110 11 1 2346789999
Q ss_pred HHHHHHHhhccchhhhHHHHHHhhcCCCC-------ch-HHHHHHHHHHHHHHHH-hCCCCCCchhHHHHHHHHHHHHHH
Q 036078 154 KLVRIRLEMQAPYISKWPQALSIQAQPLN-------VP-TSFKQRAMLVDEIWHA-VGDEASDIDWYVKRTVLGGIYSTT 224 (285)
Q Consensus 154 ~lL~~RLe~l~P~~e~~~qaLa~lalP~n-------~~-~sl~~l~~laD~Iw~~-AGD~StD~~wYtKRa~La~IY~st 224 (285)
.++...++....+...+...+.....|.. .. .....+..+...+... .|....++.-..-+..++ .+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~a~~l~~-~~~g~ 198 (273)
T 3c07_A 120 GVLKVWLDIATPYHEFAVQFFKNAADPDSPLSPFSPESEHARVEAIGIHRAVLAGAKTKVPEELRDILPELMWL-SQMGL 198 (273)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHTCTTSTTSTTSGGGHHHHHHHHHHHHHHHHTSSSCCCGGGTTHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH-HHHHH
Confidence 99999888888776655555544433421 11 1111222222222221 133322232233333333 34456
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 036078 225 EIYMLTDSSPDFCDTSRFLDDRVRDAFD 252 (285)
Q Consensus 225 el~wL~D~S~d~~~T~aFLdrRL~~a~~ 252 (285)
...|+.+..++.....++++.-++-+..
T Consensus 199 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 226 (273)
T 3c07_A 199 VLYWIFDRTEGRERSYRLAERGARLTAR 226 (273)
T ss_dssp HHHHHHCCSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCchhhhHHHHHHHHHHHHHHH
Confidence 6789888766667777777776665543
No 11
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=97.55 E-value=0.0066 Score=49.84 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|++ ||.++- ...++ +.+.....-.+..+.++|
T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (217)
T 3nrg_A 12 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 91 (217)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHcccCcccHHHHH
Confidence 5579999999999999999999999999998 787762 22222 222221111223488999
Q ss_pred HHHHHHHHhhccchhhhHHHH
Q 036078 153 SKLVRIRLEMQAPYISKWPQA 173 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~qa 173 (285)
..++..-++....+.....-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ 112 (217)
T 3nrg_A 92 RWLLDVGIQFQFHNPRLAQIA 112 (217)
T ss_dssp HHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHHCchHHHHH
Confidence 999998888777665544333
No 12
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=97.55 E-value=0.0066 Score=48.88 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=60.4
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rER 151 (285)
-+..|++||++|++++.++||...++.+.|++ ||.++- ...+++ .+.....-....+.++
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (199)
T 3on2_A 10 HGSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAESGFLRLTAALERAVEEAESHARAR 89 (199)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 35679999999999999999999999999998 787762 222221 1111100013568899
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHhhcCCC
Q 036078 152 ISKLVRIRLEMQAPYISKWPQALSIQAQPL 181 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~~~qaLa~lalP~ 181 (285)
|..++..-++....+...+.-.+.....|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (199)
T 3on2_A 90 FAALAGAYVSFALAHRELLALMYGNKHAPG 119 (199)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHhcCcCCCc
Confidence 999998888777666554444444334443
No 13
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=97.54 E-value=0.003 Score=52.87 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHHhhcC--CC----C-CCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDRIDSG--ED----L-KDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~iD~~--~~----l-~~l~~rERI~ 153 (285)
+..|++||++|+++..++||...++.++|+. ||+++- ...+++..... .. . ....+.++|.
T Consensus 21 ~~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (207)
T 3bjb_A 21 RARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMGVGFKKSAPPGESPQDAVY 100 (207)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC----------CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Confidence 4569999999999999999999999999998 888772 33443332111 11 1 2245778888
Q ss_pred HHHHHHHhhccch
Q 036078 154 KLVRIRLEMQAPY 166 (285)
Q Consensus 154 ~lL~~RLe~l~P~ 166 (285)
.++..-++....+
T Consensus 101 ~~~~~~~~~~~~~ 113 (207)
T 3bjb_A 101 NVLVRATRGLLRR 113 (207)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC
Confidence 8887776665444
No 14
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=97.48 E-value=0.0022 Score=52.38 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|+. ||.++ ....+++ .+.....-....+.++|
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
T 3e7q_A 13 EQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRL 92 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 5579999999999999999999999999998 78766 2222221 22110011245688999
Q ss_pred HHHHHHHHhhccchhh
Q 036078 153 SKLVRIRLEMQAPYIS 168 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e 168 (285)
..++..-++....+..
T Consensus 93 ~~~~~~~~~~~~~~~~ 108 (215)
T 3e7q_A 93 SAFFEASFSAELLDPQ 108 (215)
T ss_dssp HHHHHHHTSHHHHCGG
T ss_pred HHHHHHHHHHhccChH
Confidence 9998887665554443
No 15
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=97.43 E-value=0.0085 Score=48.51 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.+.|++ ||.++- ...++ +.+.... -....+.++|
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 91 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAG-DPGLSPREQL 91 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGG-CTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHHHHH
Confidence 5568999999999999999999999999998 787662 22222 2222111 1345688999
Q ss_pred HHHHHHHHhhccchhhhHHHHHHhhcC
Q 036078 153 SKLVRIRLEMQAPYISKWPQALSIQAQ 179 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~qaLa~lal 179 (285)
..++..-++....+...+.-.+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (203)
T 3f1b_A 92 RRALEGFLGFVGKHRKSWMVLYRQAMG 118 (203)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHhhc
Confidence 999999888887777666555544333
No 16
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=97.39 E-value=0.00095 Score=54.02 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.+.|++ ||.++- ...++ +.++..-.-.+..+.++|
T Consensus 9 ~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERL 88 (197)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 4579999999999999999999999999998 787662 22222 122111011235788999
Q ss_pred HHHHHHHHhhccchh
Q 036078 153 SKLVRIRLEMQAPYI 167 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~ 167 (285)
..++..-++....+.
T Consensus 89 ~~~~~~~~~~~~~~~ 103 (197)
T 3rd3_A 89 MSYWQKWLDNACPPC 103 (197)
T ss_dssp HHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHhcCc
Confidence 999998887776543
No 17
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=97.39 E-value=0.0065 Score=50.28 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh----hcC--CCC--CCCChHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI----DSG--EDL--KDLIPSQ 150 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i----D~~--~~l--~~l~~rE 150 (285)
+-+..|++||++|+++..++||...++.++|++ ||.++ ....++++. ... ... ....+.+
T Consensus 7 ~~~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (210)
T 3vib_A 7 EALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDDIENCIAQDAADAEGGSWT 86 (210)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHTTC---------CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHH
Confidence 335679999999999999999999999999998 88777 233333322 111 111 1234667
Q ss_pred HHHHHHHHHHhhccch
Q 036078 151 RISKLVRIRLEMQAPY 166 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~ 166 (285)
++...+..-++.+..+
T Consensus 87 ~l~~~~~~~~~~~~~~ 102 (210)
T 3vib_A 87 VFRHTLLHFFERLQSN 102 (210)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777777666655443
No 18
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=97.36 E-value=0.00061 Score=57.49 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQ 150 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rE 150 (285)
.-+..|++||++|++++.++||...++.++|+. ||.++- ...+++ .+... ......+.+
T Consensus 32 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 110 (221)
T 3g7r_A 32 TPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAA-RGSSPAADG 110 (221)
T ss_dssp --CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH-HHTCSSHHH
T ss_pred cchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHHH
Confidence 336689999999999999999999999999998 787662 222222 12110 012346889
Q ss_pred HHHHHHHHHHhhccch
Q 036078 151 RISKLVRIRLEMQAPY 166 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~ 166 (285)
+|..++..-++....+
T Consensus 111 ~l~~~~~~~~~~~~~~ 126 (221)
T 3g7r_A 111 QVRAVARSIVDGIRSP 126 (221)
T ss_dssp HHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999998888776544
No 19
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=97.30 E-value=0.015 Score=46.64 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.+.|+. ||.++ ....++ +.+... .-...++.+++
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 86 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQAS-VSSRGDLKQDA 86 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHT-CCCCSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH-hhcccCHHHHH
Confidence 3469999999999999999999999999998 77766 222222 222111 11234688999
Q ss_pred HHHHHHHHhhccchhh
Q 036078 153 SKLVRIRLEMQAPYIS 168 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e 168 (285)
..++..-++....+..
T Consensus 87 ~~~~~~~~~~~~~~~~ 102 (195)
T 3ppb_A 87 EQLWFAALTWAMANPL 102 (195)
T ss_dssp HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhcCHH
Confidence 9999888877665543
No 20
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=97.29 E-value=0.0066 Score=49.97 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||+++ ....+++ .+... ..+..+.++|
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~--~~~~~~~~~l 86 (194)
T 2nx4_A 9 DERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEA--LGDATGLDAL 86 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH--HTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCcCHHHHHHHHHHHHHHHHHHHHHHh--ccCCCHHHHH
Confidence 4568999999999999999999999999998 78777 2222222 22111 1245688999
Q ss_pred HHHHHHHHhhcc
Q 036078 153 SKLVRIRLEMQA 164 (285)
Q Consensus 153 ~~lL~~RLe~l~ 164 (285)
..++..-++...
T Consensus 87 ~~~~~~~~~~~~ 98 (194)
T 2nx4_A 87 RILCREVMPINE 98 (194)
T ss_dssp HHHHHHHSCCSH
T ss_pred HHHHHHhccccc
Confidence 888887665443
No 21
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=97.28 E-value=0.014 Score=47.22 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=55.7
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rER 151 (285)
-+..|++||++|++++.++||...++.+.|+. ||.++ ....+++ .++... -....+.++
T Consensus 15 ~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 93 (206)
T 3kz9_A 15 PLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNI-DLDLHAKEN 93 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHC-CTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh-cccCCHHHH
Confidence 35679999999999999999999999999998 78776 2222222 222111 133568899
Q ss_pred HHHHHHHHHhhccchhhhH
Q 036078 152 ISKLVRIRLEMQAPYISKW 170 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~~ 170 (285)
|..++..-++....+....
T Consensus 94 l~~~~~~~~~~~~~~~~~~ 112 (206)
T 3kz9_A 94 IANITNAMIELVVQDNHWL 112 (206)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhChHHH
Confidence 9999988888776654443
No 22
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=97.28 E-value=0.0035 Score=51.41 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~~~~l~~l~~rER 151 (285)
-+..+++||++|++++.++||...++.++|++ ||.++- ...+++. +.... -....+.++
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 107 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIA-AGPGSPGER 107 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-TSSSCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHH
Confidence 35679999999999999999999999999998 787662 2222221 11110 123467899
Q ss_pred HHHHHHHHHhhccchhhhHH
Q 036078 152 ISKLVRIRLEMQAPYISKWP 171 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~~~ 171 (285)
|..++..-++....+...+.
T Consensus 108 l~~~~~~~~~~~~~~~~~~~ 127 (218)
T 3dcf_A 108 IHALLVEHTRTILRNLDANT 127 (218)
T ss_dssp HHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHcchHHHH
Confidence 99999888877766655443
No 23
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=97.28 E-value=0.0031 Score=50.62 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCC-CChHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKD-LIPSQR 151 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~-l~~rER 151 (285)
+..|++||++|++++.++||...++.+.|+. ||.++ ....+++ .++... -.. ..+.++
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 87 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDIS-NNSSLSAKEK 87 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-TCTTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhh-ccccCCHHHH
Confidence 4579999999999999999999999999998 78766 2222222 222110 122 478899
Q ss_pred HHHHHH-HHHhhccch
Q 036078 152 ISKLVR-IRLEMQAPY 166 (285)
Q Consensus 152 I~~lL~-~RLe~l~P~ 166 (285)
|..++. .-++....+
T Consensus 88 l~~~~~~~~~~~~~~~ 103 (191)
T 3on4_A 88 IQKFFDAILTLTYNSE 103 (191)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhccCC
Confidence 999999 877777653
No 24
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=97.26 E-value=0.01 Score=47.97 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||. .++.++|++ ||.++- ...+++ .+.. ..-....+.++|
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~-~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 85 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVG-IGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALP-PADDGRSPRERI 85 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSC-CTTSCCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHH
Confidence 457999999999999999999 999999998 787762 222222 2211 111234788999
Q ss_pred HHHHHHHHhhccc
Q 036078 153 SKLVRIRLEMQAP 165 (285)
Q Consensus 153 ~~lL~~RLe~l~P 165 (285)
..++..-++....
T Consensus 86 ~~~~~~~~~~~~~ 98 (190)
T 3jsj_A 86 LYVFERVESQAGA 98 (190)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccC
Confidence 9998887776544
No 25
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=97.26 E-value=0.0072 Score=49.92 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQ 150 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rE 150 (285)
..+..+++||++|++++.++||...++.++|+. ||.++- ...+++ .++....-.+..+.+
T Consensus 27 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (222)
T 3bru_A 27 DASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLA 106 (222)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence 346679999999999999999999999999998 787662 222222 222111112346889
Q ss_pred HHHHHHHHHHhhccchh
Q 036078 151 RISKLVRIRLEMQAPYI 167 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~~ 167 (285)
+|..++..-++....+.
T Consensus 107 ~l~~~~~~~~~~~~~~~ 123 (222)
T 3bru_A 107 RLRLFTRMAEEGMARHG 123 (222)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99998888777665543
No 26
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.0066 Score=49.03 Aligned_cols=154 Identities=8% Similarity=0.089 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.+.|++ ||.++ ....++ +.++... -....+.+++
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 84 (199)
T 3qbm_A 6 QETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGL-AGHKHTVDTI 84 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-ccCccHHHHH
Confidence 4468999999999999999999999999998 78766 222222 2221110 1234688999
Q ss_pred HHHHHHHHhhccchh-----hhHHHHHHhhcCCCCch--HHHH----HHHHHHHHHHHH---hCCCCCCc-hhHHHHHHH
Q 036078 153 SKLVRIRLEMQAPYI-----SKWPQALSIQAQPLNVP--TSFK----QRAMLVDEIWHA---VGDEASDI-DWYVKRTVL 217 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~-----e~~~qaLa~lalP~n~~--~sl~----~l~~laD~Iw~~---AGD~StD~-~wYtKRa~L 217 (285)
..++..-++....+. ..+.... .....+.. ..+. ........+... .|.-..+. .-..-+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~~ 162 (199)
T 3qbm_A 85 IAFLDVFRSYAERPPLVGGCPILNTAI--ESDDTNPMLRERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLALLII 162 (199)
T ss_dssp HHHHHHHHGGGTCCSBTTBCHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCCCcCcchHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 999998888766554 1121111 11122211 1111 111222222221 34332322 233445566
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 036078 218 GGIYSTTEIYMLTDSSPDFCDTSRFLDDRVRD 249 (285)
Q Consensus 218 a~IY~stel~wL~D~S~d~~~T~aFLdrRL~~ 249 (285)
+.+.......++.+..++..+..+.+.+-|+.
T Consensus 163 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (199)
T 3qbm_A 163 ATMEGAVMLARILETATPLEHAYTHLATYITQ 194 (199)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 66666666656655555555555555555543
No 27
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=97.22 E-value=0.011 Score=47.46 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.+.|+. ||.++ ....+++. +..... ....+.++|
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 85 (195)
T 3pas_A 7 DSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFS-RGKDLREGL 85 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHH
Confidence 3468999999999999999999999999998 78766 22222221 111101 344678999
Q ss_pred HHHHHHHHhhccchhhhHH
Q 036078 153 SKLVRIRLEMQAPYISKWP 171 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~ 171 (285)
..++..-++....+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (195)
T 3pas_A 86 RRQWHTLFRIGLERPELFR 104 (195)
T ss_dssp HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHH
Confidence 9999888877766554443
No 28
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=97.16 E-value=0.0083 Score=50.65 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh-hcC-CCCCCCChHHHHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI-DSG-EDLKDLIPSQRISKLVRI 158 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i-D~~-~~l~~l~~rERI~~lL~~ 158 (285)
+..+++||++|++++.++||...++.++|+. ||.++ ....+++.. +.- .......+.++|..++..
T Consensus 39 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (225)
T 2id3_A 39 ARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQSLPRADTGALEEDLRANARL 118 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHCCCCCCCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 5579999999999999999999999999998 77766 233333332 111 122345678999999888
Q ss_pred HHhhccch
Q 036078 159 RLEMQAPY 166 (285)
Q Consensus 159 RLe~l~P~ 166 (285)
-++....+
T Consensus 119 ~~~~~~~~ 126 (225)
T 2id3_A 119 VVRTLDDP 126 (225)
T ss_dssp HHHHHHSH
T ss_pred HHHHHhCh
Confidence 77776543
No 29
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=97.16 E-value=0.016 Score=47.17 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH----------HHHHHHHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC----------LQRLIDRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~----------~~~L~~~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||...++.++|++ ||.++- .+.+.+.+... .....+.+++
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 83 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFGGSELLPPAVARAVLAA--DPGAAPLTAV 83 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTTTSSCCHHHHHHHHHTS--CTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhc--cCCCCcHHHH
Confidence 4479999999999999999999999999998 776661 22333333322 2345688999
Q ss_pred HHHHHHHHhhccchhhhH
Q 036078 153 SKLVRIRLEMQAPYISKW 170 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~ 170 (285)
...+..-++....+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (195)
T 2dg7_A 84 LDAMSQVGAQLVAQVEGA 101 (195)
T ss_dssp HHHHHHHTTTTTTCCTTH
T ss_pred HHHHHHHHHhhcchHHHH
Confidence 988888777665544433
No 30
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=97.16 E-value=0.0053 Score=49.05 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhc--CCCCCCCChHHHHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDS--GEDLKDLIPSQRISKLVRI 158 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~--~~~l~~l~~rERI~~lL~~ 158 (285)
+..+++||++|++++.++||...++.+.|+. ||.++ ....+++..-. .+.+....+.+. +..
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 86 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGRDVTFEEY----LVH 86 (177)
T ss_dssp HHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHHHTSCCCCCCHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHHHHHHHHHHHhccCcHHHH----HHH
Confidence 4468999999999999999999999999998 77666 23333322211 123333344444 444
Q ss_pred HHhhccchhhhHHHHH
Q 036078 159 RLEMQAPYISKWPQAL 174 (285)
Q Consensus 159 RLe~l~P~~e~~~qaL 174 (285)
-++.+..+.+.+...+
T Consensus 87 ~~~~~~~~~~~~~~~~ 102 (177)
T 3kkc_A 87 ILKHFEQNQDSIATLL 102 (177)
T ss_dssp HHHHHHHTGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555655554444
No 31
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=97.13 E-value=0.0067 Score=49.62 Aligned_cols=70 Identities=9% Similarity=0.196 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rER 151 (285)
.+..+++||++|++++.++||...++.+.|++ ||.++ ....+++ .++... -....+.++
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLW-TTETSARDK 90 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-SSSSCHHHH
T ss_pred chhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHH
Confidence 35679999999999999999999999999998 78766 2222222 111110 114578899
Q ss_pred HHHHHHHHHhh
Q 036078 152 ISKLVRIRLEM 162 (285)
Q Consensus 152 I~~lL~~RLe~ 162 (285)
|..++..-++.
T Consensus 91 l~~~~~~~~~~ 101 (212)
T 3knw_A 91 LMNYLQCWVKD 101 (212)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999988877
No 32
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=97.12 E-value=0.0078 Score=50.31 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHH----HH---HhhcCCCCCCC-ChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRL----ID---RIDSGEDLKDL-IPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L----~~---~iD~~~~l~~l-~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||.++- ...+ .+ .+..... ... .+.++|
T Consensus 2 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtlY~hF~sKe~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l 80 (208)
T 2g3b_A 2 SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGE-GSGDSARDRL 80 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTC-C-CCSHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHhc-ccCCCHHHHH
Confidence 4579999999999999999999999999998 787762 2222 22 2221111 122 678899
Q ss_pred HHHHHHHHhhc
Q 036078 153 SKLVRIRLEMQ 163 (285)
Q Consensus 153 ~~lL~~RLe~l 163 (285)
..++..-++..
T Consensus 81 ~~~~~~~~~~~ 91 (208)
T 2g3b_A 81 TRSLLGEIQDR 91 (208)
T ss_dssp HHHHHHTSCSS
T ss_pred HHHHHHHcccc
Confidence 88887755543
No 33
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=97.12 E-value=0.007 Score=48.87 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhc--CCCC-CCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDS--GEDL-KDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~--~~~l-~~l~~rERI~ 153 (285)
+..|++||++|++++.++||...++.+.|+. ||.++- ...++++ +.. ...+ ....+.++|.
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYR 89 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3459999999999999999999999999998 787662 2222222 111 0111 2346889999
Q ss_pred HHHHHHHhhccchhhhH
Q 036078 154 KLVRIRLEMQAPYISKW 170 (285)
Q Consensus 154 ~lL~~RLe~l~P~~e~~ 170 (285)
.++..-++....+....
T Consensus 90 ~~~~~~~~~~~~~~~~~ 106 (196)
T 3he0_A 90 TMWLNIWNLAGSNLNAI 106 (196)
T ss_dssp HHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHcCHHHH
Confidence 99998887776665433
No 34
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=97.12 E-value=0.014 Score=48.32 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH--------HHhhcC-CCCCCCChHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI--------DRIDSG-EDLKDLIPSQ 150 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~--------~~iD~~-~~l~~l~~rE 150 (285)
.+..|++||++|++++.++||...++.++|+. ||.++ ...++. +.++.. .......+.+
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al~~~~~~~l~~~~~~~~~~~~~~~~~~ 89 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEVNGRTFARLGAAVGAVVADGQDDHPNE 89 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 45679999999999999999999999999998 88777 222322 222211 1111126789
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHH
Q 036078 151 RISKLVRIRLEMQAPYISKWPQALS 175 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~~e~~~qaLa 175 (285)
+|..++..-++...-+.+.++-++.
T Consensus 90 ~l~~~~~~~~~~~~~~p~~~~~l~~ 114 (198)
T 3cjd_A 90 RLIAMSHAYLAFAREHPKLWRALFD 114 (198)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHHhC
Confidence 9999999888877766655554443
No 35
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=97.08 E-value=0.036 Score=44.85 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||...++.++|+. ||.++ ....+++ .+.... -....+.++|
T Consensus 15 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 93 (211)
T 3him_A 15 SKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAAD-FPDIAAPDRL 93 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTC-CTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHHHHH
Confidence 5679999999999999999999999999998 78766 2222222 222111 1345688999
Q ss_pred HHHHHHHHhhccchhhhH
Q 036078 153 SKLVRIRLEMQAPYISKW 170 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~ 170 (285)
..++..-++....+...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (211)
T 3him_A 94 MSTVTAYVTWHADNRASA 111 (211)
T ss_dssp HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhchHHH
Confidence 999988887776665444
No 36
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=97.08 E-value=0.013 Score=46.85 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++|+...++.+.|++ ||.++- ...++ +.+.... -....+.+++
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 85 (188)
T 3qkx_A 7 TDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDF-DETKPFFEQY 85 (188)
T ss_dssp HHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTC-CTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCHHHHH
Confidence 4579999999999999999999999999998 787662 22222 2222111 1234688999
Q ss_pred HHHHHHHHhhccchhhhHH
Q 036078 153 SKLVRIRLEMQAPYISKWP 171 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~ 171 (285)
..++..-++....+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (188)
T 3qkx_A 86 RQMWKNIWYFLQENPTILS 104 (188)
T ss_dssp HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHH
Confidence 9998888877766655444
No 37
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=97.06 E-value=0.0073 Score=50.48 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rER 151 (285)
-+..+++||++|+++..++||...++.++|+. ||+++- ...+++ .+.....-....+.++
T Consensus 22 ~~~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (214)
T 2oer_A 22 SSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLER 101 (214)
T ss_dssp -CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHH
Confidence 35679999999999999999999999999998 887772 222222 1211100012356788
Q ss_pred HHHHHHHHHhhcc
Q 036078 152 ISKLVRIRLEMQA 164 (285)
Q Consensus 152 I~~lL~~RLe~l~ 164 (285)
|..++..-++...
T Consensus 102 l~~~~~~~~~~~~ 114 (214)
T 2oer_A 102 LRRLVLAFVRSEC 114 (214)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8777766554433
No 38
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=97.03 E-value=0.057 Score=44.35 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHH--------HHHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRL--------IDRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L--------~~~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||+++ ....+ .+.+.... -....+.++|
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 87 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRL-HGDEDFWTVL 87 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHHHHHHHHTC-CSCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHH
Confidence 4469999999999999999999999999998 78766 22222 22222211 1234678899
Q ss_pred HHHHHHHHhhccchhh
Q 036078 153 SKLVRIRLEMQAPYIS 168 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e 168 (285)
...+..-++....+.+
T Consensus 88 ~~~~~~~~~~~~~~~~ 103 (197)
T 2f07_A 88 DILIDETFLITERHKD 103 (197)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChH
Confidence 8888877766555543
No 39
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=97.00 E-value=0.0038 Score=52.84 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=30.1
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
.-+..|++||++|++++.++||...++.++|+. ||.++
T Consensus 32 ~~~~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~sK 79 (237)
T 3kkd_A 32 GSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDI 79 (237)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----CH
T ss_pred chHHHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCChhHHHHHcCCH
Confidence 345679999999999999999999999999998 78766
No 40
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=96.98 E-value=0.013 Score=48.57 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRIS 153 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI~ 153 (285)
..+++||++|++++.++||...++.++|+. ||.++- ...+++ .+.. ...+..+.++|.
T Consensus 9 ~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~sKe~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 86 (203)
T 2np5_A 9 TSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSE--VERGGDPARALF 86 (203)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHHHH
Confidence 469999999999999999999999999998 887772 222222 2221 123457788988
Q ss_pred HHHHHHHhh
Q 036078 154 KLVRIRLEM 162 (285)
Q Consensus 154 ~lL~~RLe~ 162 (285)
.++..-++.
T Consensus 87 ~~~~~~~~~ 95 (203)
T 2np5_A 87 AAMSQLLPL 95 (203)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHccc
Confidence 888765443
No 41
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=96.97 E-value=0.0026 Score=54.71 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|++ ||.++ ....+++ .++... -....+.++|
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~~~~~~~~~~~~~~-~~~~~~~~~l 123 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAEDAFESVGIALDQVL-TKLDDPAEVF 123 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHHHHHTTG-GGSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHH
Confidence 5579999999999999999999999999998 77766 2222222 222111 1223678899
Q ss_pred HHHHHHHHhhccchh
Q 036078 153 SKLVRIRLEMQAPYI 167 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~ 167 (285)
..++..-++....+.
T Consensus 124 ~~~~~~~~~~~~~~~ 138 (245)
T 3aqt_A 124 AGSLRHLVRHSLEDR 138 (245)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhCh
Confidence 888887776655443
No 42
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=96.96 E-value=0.011 Score=48.27 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 90 VEYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 90 ~~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
...+..+++||++|++++.++||...++.++|+. ||.++
T Consensus 22 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 70 (217)
T 3mvp_A 22 ERSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASK 70 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHcCCH
Confidence 3345679999999999999999999999999998 78766
No 43
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=96.96 E-value=0.043 Score=44.58 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH----Hhhc----CCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID----RIDS----GEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~----~iD~----~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.+.|+. ||.++ ....+++ .+.. ........+.++|
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVL 92 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 5579999999999999999999999999998 78766 2222222 2111 0011234678999
Q ss_pred HHHHHHHHhhccch
Q 036078 153 SKLVRIRLEMQAPY 166 (285)
Q Consensus 153 ~~lL~~RLe~l~P~ 166 (285)
..++..-++....+
T Consensus 93 ~~~~~~~~~~~~~~ 106 (220)
T 3lhq_A 93 REILVHILEATVTE 106 (220)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99988877776554
No 44
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=96.95 E-value=0.012 Score=48.63 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhc-C-CCCCCCChHHHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDS-G-EDLKDLIPSQRISKL 155 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~-~-~~l~~l~~rERI~~l 155 (285)
..|++||++|++++.++||...++.++|++ ||.++- ...++++ +.. - .......+.+++...
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (212)
T 3rh2_A 3 KTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFDQYEQHLLLGFKPYADQKVDLELLMSY 82 (212)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 469999999999999999999999999998 787772 2222222 111 1 112345678999999
Q ss_pred HHHHHhhccchhhhHHHHH
Q 036078 156 VRIRLEMQAPYISKWPQAL 174 (285)
Q Consensus 156 L~~RLe~l~P~~e~~~qaL 174 (285)
+..-++....+...++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (212)
T 3rh2_A 83 FDAMFYTMWQFRFMYANLA 101 (212)
T ss_dssp HHHHHHHHHHTHHHHHSHH
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 9888887776654444333
No 45
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=96.94 E-value=0.014 Score=50.65 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--H------HHHHHHhhcCCCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--L------QRLIDRIDSGEDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~------~~L~~~iD~~~~l~~l~~rERI~~ 154 (285)
+..+++||++|++++.++||...++.++|+. ||.++- . +.+.+.+.. ......+.++|..
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~a~~~~~~~~~~~~~--~~~~~~~~~~l~~ 124 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTREDIVLTDEYDPVMAAELAA--RPAGEPWSDSLRH 124 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHTSSCSHHHHHHHHHT--CCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHHcCCHHHHHHhhhHHHHHHHHHHh--ccCCCCHHHHHHH
Confidence 4568999999999999999999999999998 776652 1 122233322 1234578899999
Q ss_pred HHHHHHhhccc-hhhhHHHHH
Q 036078 155 LVRIRLEMQAP-YISKWPQAL 174 (285)
Q Consensus 155 lL~~RLe~l~P-~~e~~~qaL 174 (285)
++..-++.... +...+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ 145 (260)
T 2of7_A 125 VLRKALGLGAGEEAELIRLRT 145 (260)
T ss_dssp HHHHHHTCSSSSHHHHHHHHH
T ss_pred HHHHHHHHhhccChHHHHHHH
Confidence 99998888776 444454433
No 46
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=96.93 E-value=0.014 Score=48.32 Aligned_cols=72 Identities=11% Similarity=-0.046 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH----HHhhcCCCCCCCChHHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI----DRIDSGEDLKDLIPSQRISKLV 156 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~----~~iD~~~~l~~l~~rERI~~lL 156 (285)
+..+++||++|++++.++||...++.++|+. ||.++ ....++ +.+. .......+.++|..++
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 99 (214)
T 2zb9_A 22 EEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGYFHAVEDTL--AFPDTGDVRADLLAQL 99 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHH--CCCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHhhhcc--CCCCCCCHHHHHHHHH
Confidence 4569999999999999999999999999998 78766 222322 2222 1223456889999998
Q ss_pred HHHHhhccch
Q 036078 157 RIRLEMQAPY 166 (285)
Q Consensus 157 ~~RLe~l~P~ 166 (285)
..-++....+
T Consensus 100 ~~~~~~~~~~ 109 (214)
T 2zb9_A 100 RAFTHVMTRT 109 (214)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 8877776644
No 47
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=96.90 E-value=0.014 Score=47.17 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|++ ||.++- ...+++ .++... -....+.++|
T Consensus 7 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l 85 (194)
T 3dpj_A 7 AQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQ-GTGDSPRARI 85 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHH
Confidence 4579999999999999999999999999998 787662 222221 111100 0234678899
Q ss_pred HHHHHHHHhhcc
Q 036078 153 SKLVRIRLEMQA 164 (285)
Q Consensus 153 ~~lL~~RLe~l~ 164 (285)
..++..-++...
T Consensus 86 ~~~~~~~~~~~~ 97 (194)
T 3dpj_A 86 ASFIDLMIMNRA 97 (194)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHhcc
Confidence 888887776543
No 48
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=96.89 E-value=0.011 Score=49.73 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH--------hhcC--CCCCCCChHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR--------IDSG--EDLKDLIPSQR 151 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~--------iD~~--~~l~~l~~rER 151 (285)
..|++||++|++++.++||...++.++|+. ||.++ ....++++ ++.. ..-......+.
T Consensus 28 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (217)
T 3hta_A 28 ERRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGFARVVAAHPALSDPEADLSGE 107 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHTHHHHHHHHTCGGGTSTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHH
Confidence 379999999999999999999999999998 78776 22232222 2211 01123355677
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHhc-
Q 036078 152 ISKLVRIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTEIYMLT- 230 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~~~qaLa~lalP~n~~~sl~~l~~laD~Iw~~AGD~StD~~wYtKRa~La~IY~stel~wL~- 230 (285)
+...+...++....+...+...+.. ...-+..........+.+..... ...|.. .-+..++.+.... +.|+.
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--~a~~l~~~~~G~~-~~~~~~ 180 (217)
T 3hta_A 108 LARVLGEWLGGDRTGVELEYELYLA---ALRRPALRPVAAEWAEGVGALLA-ARTDPT--TARALVAVLDGIC-LQVLLT 180 (217)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHG---GGTCGGGHHHHHHHHHHHHTTTS-TTSCHH--HHHHHHHHHHHHH-HHHHTT
T ss_pred HHHHHHHHhccChHHHHHHHHHHHH---hccCHHHHHHHHHHHHHHHHHHH-hcCCHH--HHHHHHHHHccHH-HHHHHc
Confidence 7777777666544333333333321 11222222222233333332222 123333 4455555554444 45554
Q ss_pred CCCCChHHHHHHHHHHH
Q 036078 231 DSSPDFCDTSRFLDDRV 247 (285)
Q Consensus 231 D~S~d~~~T~aFLdrRL 247 (285)
+...+.+...+.+++-|
T Consensus 181 ~~~~~~~~~~~~~~~ll 197 (217)
T 3hta_A 181 DTPYDEEYAREVLTRLI 197 (217)
T ss_dssp TCCCCHHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHHH
Confidence 44444544444444443
No 49
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=96.89 E-value=0.0032 Score=50.79 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH----HHhhcC--CCCCCCChHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI----DRIDSG--EDLKDLIPSQRISKLV 156 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~----~~iD~~--~~l~~l~~rERI~~lL 156 (285)
.+++||++|++++.++||...++.+.|++ ||.++- ...++ +.+... ....+..+.++|..++
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (183)
T 1zk8_A 9 TLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEAAEDKRMDEAIHALG 88 (183)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 48999999999999999999999999998 787762 22222 211110 0112346789999888
Q ss_pred HHHHhhccchh
Q 036078 157 RIRLEMQAPYI 167 (285)
Q Consensus 157 ~~RLe~l~P~~ 167 (285)
..-++....+.
T Consensus 89 ~~~~~~~~~~~ 99 (183)
T 1zk8_A 89 EAYVAFVRKHP 99 (183)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHHCh
Confidence 88776665443
No 50
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=96.88 E-value=0.017 Score=51.71 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChH
Q 036078 90 VEYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPS 149 (285)
Q Consensus 90 ~~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~r 149 (285)
..-+..+++||+++++++.+.||...++.++|+. ||.++ ....+++ .++... -....+.
T Consensus 116 ~~~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~ 194 (311)
T 4ich_A 116 EPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAEL-HTIADAR 194 (311)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCHH
T ss_pred cchhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHH
Confidence 3446689999999999999999999999999998 77766 2222222 111110 1124678
Q ss_pred HHHHHHHHHHHhhccchhhh
Q 036078 150 QRISKLVRIRLEMQAPYISK 169 (285)
Q Consensus 150 ERI~~lL~~RLe~l~P~~e~ 169 (285)
++|..++...++....+...
T Consensus 195 e~l~~~~~~~~~~~~~~~~~ 214 (311)
T 4ich_A 195 ERLVRLVELQLPTPGLLRDE 214 (311)
T ss_dssp HHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHHHHHHhccccccccHH
Confidence 89998888766666544433
No 51
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=96.86 E-value=0.084 Score=42.36 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHHhhc---C---CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDRIDS---G---EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~iD~---~---~~l~~l~~rERI~~ 154 (285)
+..|++||++|++++.++||...++.++|++ ||.++- ...+++.... . .......+.++|..
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (206)
T 3dew_A 7 ADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVMTA 86 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHGGGGCCHHHHTTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 4579999999999999999999999999998 787772 3333332211 1 01133467899999
Q ss_pred HHHHHHhhccchhhhHHHHHHhhcC
Q 036078 155 LVRIRLEMQAPYISKWPQALSIQAQ 179 (285)
Q Consensus 155 lL~~RLe~l~P~~e~~~qaLa~lal 179 (285)
++..-++....+...+.-.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (206)
T 3dew_A 87 YLRWTIQRHRNNPQLLRFYTSELTN 111 (206)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHS
T ss_pred HHHHHHHHHccChHHHHHHHHHhhc
Confidence 9988887776665555444443333
No 52
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=96.85 E-value=0.0086 Score=48.83 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=49.8
Q ss_pred HHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhcC-CCCCCCChHHHHHHHHHH
Q 036078 96 QARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDSG-EDLKDLIPSQRISKLVRI 158 (285)
Q Consensus 96 r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~~-~~l~~l~~rERI~~lL~~ 158 (285)
|++||++|++++.++||...++.++|++ ||.++- ...+++. +... .........+++...+..
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGAGPQGLWEFLQV 89 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 777662 2222221 1110 112223556888888888
Q ss_pred HHhhccch
Q 036078 159 RLEMQAPY 166 (285)
Q Consensus 159 RLe~l~P~ 166 (285)
-++.....
T Consensus 90 ~~~~~~~~ 97 (195)
T 3frq_A 90 LVRSMNTR 97 (195)
T ss_dssp HHHTSCCS
T ss_pred HHHHhhcc
Confidence 88877744
No 53
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=96.82 E-value=0.027 Score=45.28 Aligned_cols=65 Identities=9% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRISK 154 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI~~ 154 (285)
.|++||++|++++.++||...++.+.|++ ||.++- ...++ +.+.... -....+.++|..
T Consensus 3 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 81 (194)
T 3bqz_B 3 LKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQ-IKAKTNREKFYL 81 (194)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHG-GGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHHHHHHH
Confidence 47899999999999999999999999998 777662 22222 2221111 123468899999
Q ss_pred HHHHHH
Q 036078 155 LVRIRL 160 (285)
Q Consensus 155 lL~~RL 160 (285)
++...+
T Consensus 82 ~~~~~~ 87 (194)
T 3bqz_B 82 YNELSL 87 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998888
No 54
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=96.78 E-value=0.021 Score=45.71 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||...++.+.|+. ||.++- ...+++ .++... -....+.++|
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 85 (194)
T 2g7s_A 7 QSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELE-KNISDPLEQL 85 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh-cccCCHHHHH
Confidence 3579999999999999999999999999998 787762 222221 111110 0134678899
Q ss_pred HHHHHHHHhhccchh
Q 036078 153 SKLVRIRLEMQAPYI 167 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~ 167 (285)
..++..-++....+.
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (194)
T 2g7s_A 86 RAYIGYWEGCIADAT 100 (194)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhccCC
Confidence 988888777665543
No 55
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=96.78 E-value=0.056 Score=44.60 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||+++- ...++++ +... ......+.++|
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~hF~sKe~L~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~l 89 (200)
T 2hyj_A 11 QATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEP-ALAEPPGLRRL 89 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTGG-GGGSCTTHHHH
T ss_pred hccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHH
Confidence 5579999999999999999999999999998 887772 2222221 1111 11223567898
Q ss_pred HHHHHHHHhhcc
Q 036078 153 SKLVRIRLEMQA 164 (285)
Q Consensus 153 ~~lL~~RLe~l~ 164 (285)
..++..-++...
T Consensus 90 ~~~~~~~~~~~~ 101 (200)
T 2hyj_A 90 RAVCANSVGYLE 101 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887666543
No 56
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=96.77 E-value=0.0087 Score=50.16 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH----Hhhc-C-CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID----RIDS-G-EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~----~iD~-~-~~l~~l~~rERI~~ 154 (285)
+..|++||++|++++.++||...++.++|++ ||.++- ...+++ .+.. - .......+.+++..
T Consensus 4 ~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (228)
T 3nnr_A 4 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 83 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCCSSSCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhcCCCHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 3469999999999999999999999999998 787762 222222 2211 1 11234567889999
Q ss_pred HHHHHHhhccchhhhHHHHH
Q 036078 155 LVRIRLEMQAPYISKWPQAL 174 (285)
Q Consensus 155 lL~~RLe~l~P~~e~~~qaL 174 (285)
.+..-++....+...++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~ 103 (228)
T 3nnr_A 84 YLESVFDGLWSYRFFHRDLE 103 (228)
T ss_dssp HHHHHHHHHHHTHHHHHSHH
T ss_pred HHHHHHHHHHHccHHHHHHH
Confidence 88888887777664444333
No 57
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=96.74 E-value=0.035 Score=45.82 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCC------CCCChHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDL------KDLIPSQ 150 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l------~~l~~rE 150 (285)
..+..|++||++|++++.++||...++.++|++ ||.++ ....+++..... ..+ ....+.+
T Consensus 12 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (221)
T 3c2b_A 12 EFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAPQLAD 91 (221)
T ss_dssp --CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHTSSCCCCCCCSCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCHHH
Confidence 345679999999999999999999999999998 77766 344444443221 111 1224567
Q ss_pred HHHHHHHHHHhhccchh
Q 036078 151 RISKLVRIRLEMQAPYI 167 (285)
Q Consensus 151 RI~~lL~~RLe~l~P~~ 167 (285)
+|..++..-++....+.
T Consensus 92 ~l~~~~~~~~~~~~~~~ 108 (221)
T 3c2b_A 92 HLEVFAHDLLDVLAGDV 108 (221)
T ss_dssp HHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 88888877776665443
No 58
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=96.73 E-value=0.014 Score=46.96 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH----HHhhcC--CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI----DRIDSG--EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~----~~iD~~--~~l~~l~~rERI~~ 154 (285)
+..+++||++|++++.++||...++.+.|+. ||.++- ...++ +.+... ....+..+.++|..
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (180)
T 2fd5_A 6 TQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRAL 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTSCTTSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4568999999999999999999999999998 787762 22222 221110 12233568899988
Q ss_pred HHHHHHhhc
Q 036078 155 LVRIRLEMQ 163 (285)
Q Consensus 155 lL~~RLe~l 163 (285)
++..-++..
T Consensus 86 ~~~~~~~~~ 94 (180)
T 2fd5_A 86 AAAFYLSRK 94 (180)
T ss_dssp HHHHHSCHH
T ss_pred HHHHHHHHH
Confidence 888766653
No 59
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=96.72 E-value=0.049 Score=44.24 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH--------HHhhcCCCCCC-CChHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI--------DRIDSGEDLKD-LIPSQR 151 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~--------~~iD~~~~l~~-l~~rER 151 (285)
+..+++||++|++++.++||...++.++|++ ||.++ ....++ +.+..... .. ..+.++
T Consensus 15 ~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 93 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLA-KDDMSPEAK 93 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 5579999999999999999999999999998 77766 222222 22211111 23 578899
Q ss_pred HHHHHHHHHhhccchhhhH
Q 036078 152 ISKLVRIRLEMQAPYISKW 170 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~~ 170 (285)
|..++..-++....+...+
T Consensus 94 l~~~~~~~~~~~~~~~~~~ 112 (213)
T 2qtq_A 94 LRRHISKCIDTYYDYPYLN 112 (213)
T ss_dssp HHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHhcCcHHH
Confidence 9999888777766554433
No 60
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=96.68 E-value=0.13 Score=41.98 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|+. ||.++ ....+++ .+..........+.++|
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (216)
T 3s5r_A 9 KNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMV 88 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTTCCSCCSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHH
Confidence 5579999999999999999999999999998 78766 2222222 22211112345788999
Q ss_pred HHHHHHHHhhccchhhhHHH
Q 036078 153 SKLVRIRLEMQAPYISKWPQ 172 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~q 172 (285)
..++..-++....+...+.-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~ 108 (216)
T 3s5r_A 89 RDLVNRIVNTCETMLWLPSL 108 (216)
T ss_dssp HHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH
Confidence 99998888777766544433
No 61
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=96.67 E-value=0.11 Score=42.32 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH----hhcC--CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR----IDSG--EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~----iD~~--~~l~~l~~rERI~~ 154 (285)
+..|++||++|++++.++||...++.+.|++ ||.++ ....+++. +... .-..+..+.+++..
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKE 96 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHHCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 5579999999999999999999999999998 78766 22222221 1110 11234568899999
Q ss_pred HHHHHHhhccchhhhH
Q 036078 155 LVRIRLEMQAPYISKW 170 (285)
Q Consensus 155 lL~~RLe~l~P~~e~~ 170 (285)
++...++....+....
T Consensus 97 ~~~~~~~~~~~~~~~~ 112 (212)
T 1pb6_A 97 YIRLKLEVSRDYPQAS 112 (212)
T ss_dssp HHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhCHHHH
Confidence 9988887776654443
No 62
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=96.66 E-value=0.031 Score=45.29 Aligned_cols=66 Identities=3% Similarity=0.154 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhc-C-CCCCCCChHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDS-G-EDLKDLIPSQRISKLV 156 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~-~-~~l~~l~~rERI~~lL 156 (285)
.+.+||++|++++.++||...++.++|++ ||.++- ...++++ +.. - .......+.++|...+
T Consensus 8 ~~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (192)
T 2zcm_A 8 MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNHDDNYSIDGLYQFL 87 (192)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 37899999999999999999999999998 787662 2222222 111 0 1112235678888888
Q ss_pred HHHH
Q 036078 157 RIRL 160 (285)
Q Consensus 157 ~~RL 160 (285)
...+
T Consensus 88 ~~~~ 91 (192)
T 2zcm_A 88 FKFI 91 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 63
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=96.66 E-value=0.032 Score=45.73 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||...++.++|+. ||.++- ...++ +.++.... ....+.++|
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 88 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILN-SGIDATALL 88 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT-SCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCHHHHH
Confidence 4579999999999999999999999999998 787762 22222 22221101 122678899
Q ss_pred HHHHHHHHhhccch
Q 036078 153 SKLVRIRLEMQAPY 166 (285)
Q Consensus 153 ~~lL~~RLe~l~P~ 166 (285)
..++...++....+
T Consensus 89 ~~~~~~~~~~~~~~ 102 (216)
T 3f0c_A 89 KKYVKLRSLHFRHL 102 (216)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888766555433
No 64
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=96.66 E-value=0.035 Score=45.95 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++| ...++.++|+. ||.++- ...++ +.++... -....+.++|
T Consensus 19 ~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l 96 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDA-ATAETVGDYT 96 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHHHHH
Confidence 5579999999999999999 99999999998 777662 22222 1111110 0234678999
Q ss_pred HHHHHHHHhhccchhhhHHHHH
Q 036078 153 SKLVRIRLEMQAPYISKWPQAL 174 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~qaL 174 (285)
..++..-++...++...+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~ 118 (215)
T 2hku_A 97 EKLVGSLLGPGAPSVELFTSAM 118 (215)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHH
Confidence 9988887776555544444443
No 65
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=96.64 E-value=0.022 Score=46.46 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
..+++||++|++++.++||...++.++|++ ||.++
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 53 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGI 53 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCCCH
Confidence 569999999999999999999999999998 78766
No 66
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=96.59 E-value=0.015 Score=48.10 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHhHHh-hcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC-------CCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVA-KHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG-------EDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp-~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~-------~~l~~l~~rERI 152 (285)
+..+++||++|++++. ++||...++.++|+. ||.++ ....+++..... ..-....+.+++
T Consensus 10 ~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (220)
T 3lsj_A 10 QQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLI 89 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHHHHHHTTHHHHHHHHTTTC--CCHHH
T ss_pred HhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4579999999999999 999999999999998 78776 233332222110 011223457889
Q ss_pred HHHHHHHHhhccchhhhHHHHHH
Q 036078 153 SKLVRIRLEMQAPYISKWPQALS 175 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e~~~qaLa 175 (285)
..++..-++....+...+.-.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~ 112 (220)
T 3lsj_A 90 DASVRIFLDAVGANRSQFLFLAR 112 (220)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHH
Confidence 99888888888777665554443
No 67
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=96.53 E-value=0.087 Score=43.11 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=53.3
Q ss_pred CCCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChH
Q 036078 90 VEYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPS 149 (285)
Q Consensus 90 ~~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~r 149 (285)
.+.+..|++||++|+++..++||...++.++|+. ||.++- ...++ +.++... -....+.
T Consensus 10 ~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 88 (203)
T 3ccy_A 10 ADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVL-YGSNEPK 88 (203)
T ss_dssp --CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHH-TTCSCHH
T ss_pred hhhhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH
Confidence 3446689999999999999999999999999998 787762 22222 1221110 1234678
Q ss_pred HHHHHHHHHHHhhccchhh
Q 036078 150 QRISKLVRIRLEMQAPYIS 168 (285)
Q Consensus 150 ERI~~lL~~RLe~l~P~~e 168 (285)
++|..++..-++....+..
T Consensus 89 ~~l~~~~~~~~~~~~~~~~ 107 (203)
T 3ccy_A 89 TRFLQIVKLFLEIYATSRD 107 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 8998888877766554443
No 68
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=96.52 E-value=0.032 Score=45.40 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHH----HHhhcC--CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLI----DRIDSG--EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~----~~iD~~--~~l~~l~~rERI~~ 154 (285)
+..|++||++|+++..++||...++.++|++ ||.++ ....++ +.+... .......+.++|..
T Consensus 17 ~~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (212)
T 3loc_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKE 96 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 3458999999999999999999999999998 88777 222222 211110 11233457788888
Q ss_pred HHHHHHhhccchhhhH
Q 036078 155 LVRIRLEMQAPYISKW 170 (285)
Q Consensus 155 lL~~RLe~l~P~~e~~ 170 (285)
.+...++....+....
T Consensus 97 ~~~~~~~~~~~~~~~~ 112 (212)
T 3loc_A 97 YIRLKLEVSRDYPQAS 112 (212)
T ss_dssp HHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHChHHH
Confidence 8887777666554433
No 69
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=96.51 E-value=0.13 Score=42.54 Aligned_cols=72 Identities=10% Similarity=0.186 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||.++ ....+++ .++.........+.++|
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (219)
T 2w53_A 10 QATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDL 89 (219)
T ss_dssp GCCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 4459999999999999999999999999998 78776 2222222 22211111224678889
Q ss_pred HHHHHHHHhhcc
Q 036078 153 SKLVRIRLEMQA 164 (285)
Q Consensus 153 ~~lL~~RLe~l~ 164 (285)
...+..-++...
T Consensus 90 ~~~~~~~~~~~~ 101 (219)
T 2w53_A 90 RAVMIHSFIELS 101 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888887776554
No 70
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=96.49 E-value=0.08 Score=45.17 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh----hcC---CCCCCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI----DSG---EDLKDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i----D~~---~~l~~l~~rERI~ 153 (285)
+..|++||++|++++.++||...++.++|++ ||.++ ....++++. ... .......+.++|.
T Consensus 17 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (251)
T 3npi_A 17 EVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTAEEMYLASAVPVEGVR 96 (251)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHHHHHHHHHTSCCHHHHCCSSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 4469999999999999999999999999998 77766 233333322 111 0113456889999
Q ss_pred HHHHHHHhhccchhhhHHHHH
Q 036078 154 KLVRIRLEMQAPYISKWPQAL 174 (285)
Q Consensus 154 ~lL~~RLe~l~P~~e~~~qaL 174 (285)
.++..-++....+...++-.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ 117 (251)
T 3npi_A 97 TIVEAVFHRYVQHPEAVRMLQ 117 (251)
T ss_dssp HHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHH
Confidence 999988887776655444333
No 71
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=96.48 E-value=0.023 Score=45.91 Aligned_cols=73 Identities=5% Similarity=-0.005 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||...++.+.|++ ||.++- ...+++ .++... -....+.++|
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 88 (204)
T 3eup_A 10 DRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKV-QACNTYKEML 88 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHH
Confidence 4579999999999999999999999999998 787762 222222 111110 1134688999
Q ss_pred HHHHHHHHhhccch
Q 036078 153 SKLVRIRLEMQAPY 166 (285)
Q Consensus 153 ~~lL~~RLe~l~P~ 166 (285)
..++..-++....+
T Consensus 89 ~~~~~~~~~~~~~~ 102 (204)
T 3eup_A 89 LVYSSMYNDADGSL 102 (204)
T ss_dssp TCHHHHHHGGGGTT
T ss_pred HHHHHHHHHHHhcc
Confidence 98888888765554
No 72
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=96.45 E-value=0.027 Score=45.38 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
..|++||++|+++..++||...++.++|+. ||.++
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~sK 46 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSK 46 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcCCH
Confidence 358999999999999999999999999998 88776
No 73
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=96.45 E-value=0.0099 Score=49.24 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.++|+. ||.++
T Consensus 29 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 74 (212)
T 2np3_A 29 TRTREAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTK 74 (212)
T ss_dssp ------CHHHHHHHC---------------------------CCC-
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHhCCH
Confidence 4569999999999999999999999999998 77766
No 74
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=96.41 E-value=0.15 Score=42.25 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||.++- ...++ +.+.... -....+.++|
T Consensus 7 ~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~l 85 (206)
T 1vi0_A 7 RPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDI-KEKATAKEKL 85 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHHHHH
Confidence 3469999999999999999999999999998 787762 22222 2221110 0123578999
Q ss_pred HHHHHHHHhhccchh
Q 036078 153 SKLVRIRLEMQAPYI 167 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~ 167 (285)
..++..-++....+.
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (206)
T 1vi0_A 86 ALVISKHFSLLAGDH 100 (206)
T ss_dssp HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCc
Confidence 998888777665553
No 75
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=96.39 E-value=0.023 Score=45.14 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+.|++||++|++++.++||...++.+.|+. ||.++
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 48 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESK 48 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 469999999999999999999999999998 78776
No 76
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=96.38 E-value=0.0088 Score=50.03 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~~~~l~~l~~rER 151 (285)
.+..|++||++|++++.++||...++.++|+. ||+++- ...++++ +.....-....+.++
T Consensus 7 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (209)
T 2gfn_A 7 HDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEK 86 (209)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHH
Confidence 45679999999999999999999999999998 887772 2222221 111101003568899
Q ss_pred HHHHHHHHHhhc
Q 036078 152 ISKLVRIRLEMQ 163 (285)
Q Consensus 152 I~~lL~~RLe~l 163 (285)
|..++..-++..
T Consensus 87 l~~~~~~~~~~~ 98 (209)
T 2gfn_A 87 LRNITASILPLD 98 (209)
T ss_dssp HHHHHHTTSCCS
T ss_pred HHHHHHHhCCCc
Confidence 988887655433
No 77
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=96.37 E-value=0.013 Score=48.04 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcC-CCCCCCChHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSG-EDLKDLIPSQR 151 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~-~~l~~l~~rER 151 (285)
+..|++||++|++++.++||...++.++|++ ||.++- ...++ +.+... .......+.++
T Consensus 18 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (216)
T 3qqa_A 18 LARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIKNGTLKEI 97 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCHHHH
Confidence 5579999999999999999999999999998 787662 22222 111111 01123568888
Q ss_pred HHHHHHHHHhhccch
Q 036078 152 ISKLVRIRLEMQAPY 166 (285)
Q Consensus 152 I~~lL~~RLe~l~P~ 166 (285)
|..++..-++.....
T Consensus 98 l~~~~~~~~~~~~~~ 112 (216)
T 3qqa_A 98 LTSFGLAFIEIFNQP 112 (216)
T ss_dssp HHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHhcCh
Confidence 888888766655443
No 78
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=96.36 E-value=0.042 Score=46.19 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..|++||++|++++.++||...++.++|+. ||++|
T Consensus 13 ~~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~sK 58 (208)
T 3v6g_A 13 AGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDL 58 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 4569999999999999999999999999998 88777
No 79
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=96.35 E-value=0.065 Score=44.83 Aligned_cols=68 Identities=7% Similarity=0.132 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||+++- ...+++. ++.... ....+.+++
T Consensus 8 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 86 (215)
T 1ui5_A 8 EQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDG-RGYSSLEAL 86 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTS-SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHhhCCCHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCHHHHH
Confidence 4579999999999999999999999999998 887772 2222221 221111 224567887
Q ss_pred HHHHHHHHh
Q 036078 153 SKLVRIRLE 161 (285)
Q Consensus 153 ~~lL~~RLe 161 (285)
..++..-++
T Consensus 87 ~~~~~~~~~ 95 (215)
T 1ui5_A 87 MRLTFGMAR 95 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665444
No 80
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=96.29 E-value=0.062 Score=44.05 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH--------HHhhcCCCCCCCChHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI--------DRIDSGEDLKDLIPSQRIS 153 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~--------~~iD~~~~l~~l~~rERI~ 153 (285)
..+++||++|+++..++||...++.++|+. ||+++- ...++ +.+.... -....+.++|.
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 87 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVRRLL-AQGREPVEVLR 87 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHH
Confidence 468999999999999999999999999998 787762 22222 2121100 02345778888
Q ss_pred HHHHHHHhhccch
Q 036078 154 KLVRIRLEMQAPY 166 (285)
Q Consensus 154 ~lL~~RLe~l~P~ 166 (285)
.++..-++....+
T Consensus 88 ~~~~~~~~~~~~~ 100 (204)
T 3anp_C 88 HLFRVLAEGTARE 100 (204)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 8888777665544
No 81
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=96.28 E-value=0.085 Score=43.34 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCC-CCCChHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDL-KDLIPSQRI 152 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l-~~l~~rERI 152 (285)
+.|++||++|+++..++||...++.++|+. ||.++- ...+++ .+...... ....+.++|
T Consensus 5 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AgvskgtlY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (202)
T 2id6_A 5 SKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFDFM 84 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHH
Confidence 368999999999999999999999999998 777662 222221 11110000 234578888
Q ss_pred HHHHHHHHhhccch
Q 036078 153 SKLVRIRLEMQAPY 166 (285)
Q Consensus 153 ~~lL~~RLe~l~P~ 166 (285)
...+...++....+
T Consensus 85 ~~~~~~~~~~~~~~ 98 (202)
T 2id6_A 85 ERWIEKKLEYSASH 98 (202)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88887777655433
No 82
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=96.27 E-value=0.083 Score=42.17 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHH----HHHh--hcC---CCCCCCChHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRL----IDRI--DSG---EDLKDLIPSQR 151 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L----~~~i--D~~---~~l~~l~~rER 151 (285)
+..|++||++|++++.++||...++.++|+. ||.++- ...+ .+.+ ... ..-....+.++
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTR 88 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHH
Confidence 4579999999999999999999999999998 787662 2222 2222 110 01123467889
Q ss_pred HHHHHHHHHhhccchhhh
Q 036078 152 ISKLVRIRLEMQAPYISK 169 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e~ 169 (285)
+..++..-++....+...
T Consensus 89 l~~~~~~~~~~~~~~~~~ 106 (196)
T 3col_A 89 IRLYVQQVYDYSLANPDS 106 (196)
T ss_dssp HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHcCHHH
Confidence 988888877776555433
No 83
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=96.22 E-value=0.043 Score=47.68 Aligned_cols=130 Identities=10% Similarity=-0.017 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCC-CC--CChHHHHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDL-KD--LIPSQRISKLV 156 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l-~~--l~~rERI~~lL 156 (285)
..+++||++|++++.++||...++.+.|++ ||.++ ....+++.+-.. ..+ .. ...+++|..++
T Consensus 16 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (237)
T 2hxo_A 16 LSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVVTAAVTAGPTGAADSPQDAVRAVA 95 (237)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHHHHHHHHHTCSCCCTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHH
Confidence 358999999999999999999999999998 78766 233333332111 122 34 57889999998
Q ss_pred HHHHhhccchhhhHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHH
Q 036078 157 RIRLEMQAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTE 225 (285)
Q Consensus 157 ~~RLe~l~P~~e~~~qaLa~lalP~n~~~sl~~l~~laD~Iw~~AGD~StD~~wYtKRa~La~IY~ste 225 (285)
..-++.+..|....+-.+.....|...+......-.+...+ ...|-...+..+ .-+..++.|.....
T Consensus 96 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~-~~~~l~~~v~G~~~ 162 (237)
T 2hxo_A 96 LGLWDATEAHPWLATQLATQLSRTPWGTVAPRIFESLGRQV-QAMGVPEAHWFT-ASSALMHYILGAAG 162 (237)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHCTTCSHHHHHHHHHHHHH-HHTTCCGGGHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCccHHHHHHHHccCCCCCchHHHHHHHHHHHH-HHcCCChHHHHH-HHHHHHHHHHHHHH
Confidence 88777776665444333222333433333333222333222 334543333222 22344444444443
No 84
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=96.20 E-value=0.094 Score=42.71 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHH-HHhhcCCCC-CCCChHHHHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLI-DRIDSGEDL-KDLIPSQRISKLVRI 158 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~-~~iD~~~~l-~~l~~rERI~~lL~~ 158 (285)
+..+++||++|+++..++||...++.++|+. ||+++- ...++ +.++....+ ....+.+++..++..
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSAAAARLPVPDTGSALNDILIHATS 90 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHSCCCCCCCCCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCCCHHHHHHHHHHHhccccCCCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999999999998 888773 32333 333221111 234577888888877
Q ss_pred HHhhcc
Q 036078 159 RLEMQA 164 (285)
Q Consensus 159 RLe~l~ 164 (285)
-++...
T Consensus 91 ~~~~~~ 96 (192)
T 2fq4_A 91 LANFLI 96 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666543
No 85
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=96.16 E-value=0.014 Score=47.27 Aligned_cols=36 Identities=6% Similarity=0.199 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.+.|+. ||.++
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 5579999999999999999999999999998 78776
No 86
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=96.12 E-value=0.17 Score=41.68 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH--------hhcCCCC--CCCChHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR--------IDSGEDL--KDLIPSQ 150 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~--------iD~~~~l--~~l~~rE 150 (285)
+..|++||++|+++..++||...++.++|+. ||.++ ....++++ +...... ....+.+
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (211)
T 3bhq_A 11 ARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDIIESVTTLLSEAIFMEG 90 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHH
Confidence 4568999999999999999999999999998 77766 22222221 1110000 2346788
Q ss_pred HHHHHHHHHHhhc
Q 036078 151 RISKLVRIRLEMQ 163 (285)
Q Consensus 151 RI~~lL~~RLe~l 163 (285)
+|..++..-++..
T Consensus 91 ~l~~~~~~~~~~~ 103 (211)
T 3bhq_A 91 GLQQLARRLIAVL 103 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888766653
No 87
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=96.11 E-value=0.038 Score=45.05 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRIS 153 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI~ 153 (285)
..|++||++|++++.++||...++.+.|+. ||.++- ...+++ .++....-....+ ++|.
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 82 (185)
T 2yve_A 4 SKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRDPEDPL-ERLR 82 (185)
T ss_dssp CHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCSSTTSHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCH-HHHH
Confidence 468999999999999999999999999998 787662 222221 1111111113456 8888
Q ss_pred HHHHHHHhhc
Q 036078 154 KLVRIRLEMQ 163 (285)
Q Consensus 154 ~lL~~RLe~l 163 (285)
.++..-++..
T Consensus 83 ~~~~~~~~~~ 92 (185)
T 2yve_A 83 AVVVTLAENV 92 (185)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHhcc
Confidence 8877655443
No 88
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=96.09 E-value=0.47 Score=39.02 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh-hcCC---CCCCCChHHHHHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI-DSGE---DLKDLIPSQRISKL 155 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i-D~~~---~l~~l~~rERI~~l 155 (285)
-+..+++||++|+++..++||...++.++|+. ||+++ ....++++. +..+ ......+.++|...
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (210)
T 2wui_A 9 SQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQIEVPDENARVPALDILLRA 88 (210)
T ss_dssp CTHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHTTSCCCCTTCSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 35679999999999999999999999999998 88877 233444332 2111 11234577888887
Q ss_pred HHHHHhhcc
Q 036078 156 VRIRLEMQA 164 (285)
Q Consensus 156 L~~RLe~l~ 164 (285)
+..-++...
T Consensus 89 ~~~~~~~~~ 97 (210)
T 2wui_A 89 GMGFLRQCC 97 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776665443
No 89
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=96.06 E-value=0.039 Score=44.70 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 91 EYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 91 ~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
.-+..+++||++|++++.++||...++.+.|++ ||.++
T Consensus 9 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 9 QNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 345679999999999999999999999999998 78766
No 90
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=96.06 E-value=0.011 Score=48.06 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH----Hh----hcCCCCCCCChHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID----RI----DSGEDLKDLIPSQRISK 154 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~----~i----D~~~~l~~l~~rERI~~ 154 (285)
.|++||++|+++..++||...++.++|+. ||++|- ...+++ .+ .....-.+..+.++|+.
T Consensus 8 tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (178)
T 4hku_A 8 SQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYRNKEDLFQKLALRWLEETSREIFAWTQDAGQTPDDALHD 87 (178)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHHHHHHHTHHHHHCCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 58999999999999999999999999998 888772 223222 22 11111123467888877
Q ss_pred HHHHHHh
Q 036078 155 LVRIRLE 161 (285)
Q Consensus 155 lL~~RLe 161 (285)
.+..-++
T Consensus 88 ~~~~~~~ 94 (178)
T 4hku_A 88 WLWLLAD 94 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655443
No 91
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=96.05 E-value=0.023 Score=47.90 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD 123 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d 123 (285)
+..+++||++|++++.+.||...++.++|++
T Consensus 38 ~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~ 68 (214)
T 2guh_A 38 EQSRSLIVDAAGRAFATRPYREITLKDIAED 68 (214)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcChhhcCHHHHHHH
Confidence 5579999999999999999999999999998
No 92
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=96.05 E-value=0.14 Score=43.45 Aligned_cols=80 Identities=9% Similarity=-0.044 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh----hcC-CCCCCCChHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI----DSG-EDLKDLIPSQRISKLVR 157 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i----D~~-~~l~~l~~rERI~~lL~ 157 (285)
.+++||++|++++.++||...++.+.|++ ||.++ ....+++++ ... .........++|..++.
T Consensus 26 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 105 (211)
T 3fiw_A 26 NRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQAAMAPHAAEPLPEPGEDWHGWFLRNTR 105 (211)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHHHTTHHHHTSCCCCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999998 78766 333443332 111 12234568899999999
Q ss_pred HHHhhccchhhhHHHHH
Q 036078 158 IRLEMQAPYISKWPQAL 174 (285)
Q Consensus 158 ~RLe~l~P~~e~~~qaL 174 (285)
.-++.+..+...++-.+
T Consensus 106 ~~~~~~~~~p~~~~~~~ 122 (211)
T 3fiw_A 106 SFRRTLLARRDGARLHA 122 (211)
T ss_dssp HHHHHHHTSTTHHHHHH
T ss_pred HHHHHHHHCccHHHHHh
Confidence 88888877766554443
No 93
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=96.04 E-value=0.03 Score=47.25 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH----hhcC-CC-C-CCCChHHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR----IDSG-ED-L-KDLIPSQRISK 154 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~----iD~~-~~-l-~~l~~rERI~~ 154 (285)
..+++||++|++++.++||...++.++|++ ||.++ ....+++. +... .. + ....+.++|..
T Consensus 30 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (230)
T 2iai_A 30 YTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELFGILDEEHARVGTAAERLEY 109 (230)
T ss_dssp -CCSCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHTTSHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 357899999999999999999999999998 78766 22222222 1110 11 1 13467889998
Q ss_pred HHHHHHhhccchhhhH
Q 036078 155 LVRIRLEMQAPYISKW 170 (285)
Q Consensus 155 lL~~RLe~l~P~~e~~ 170 (285)
++..-++....+...+
T Consensus 110 ~~~~~~~~~~~~~~~~ 125 (230)
T 2iai_A 110 VVRRMVEVLMAELPYV 125 (230)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCcHHH
Confidence 8888777766655444
No 94
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=95.84 E-value=0.18 Score=40.76 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--H-HHHHHHhh----cC-CCCCCCChHHHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--L-QRLIDRID----SG-EDLKDLIPSQRISKL 155 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~-~~L~~~iD----~~-~~l~~l~~rERI~~l 155 (285)
..|++||++|+++..++||...++.+.|++ ||.++- . ..+.+... .. ..+....+.++|..+
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (190)
T 3vpr_A 3 TTRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFGSKEEILYEISLLALKGLVAAGEKALEVADPKEALRRF 82 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 368999999999999999999999999998 787762 2 22222111 00 111223477889988
Q ss_pred HHHHHhhccchhhhHH
Q 036078 156 VRIRLEMQAPYISKWP 171 (285)
Q Consensus 156 L~~RLe~l~P~~e~~~ 171 (285)
+..-++....+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~ 98 (190)
T 3vpr_A 83 MEAHARYFEENYPFFV 98 (190)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcchHHH
Confidence 8887776665544433
No 95
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=95.79 E-value=0.26 Score=39.53 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR 136 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~ 136 (285)
+..+++||++|++++.++||...++.++|++ ||.++ ....+++.
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 71 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVES 71 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 5679999999999999999999999999998 78776 34444443
No 96
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=95.73 E-value=0.35 Score=39.62 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh--------hcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI--------DSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i--------D~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||.++ ....+++.. +.........+.++|
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (210)
T 2xdn_A 10 QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLAETHDHLARASESEDEVDPLGCM 89 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHHHTTHHHHHHHTCTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHH
Confidence 4568999999999999999999999999998 88777 233333221 110111224677888
Q ss_pred HHHHHHHHhhcc
Q 036078 153 SKLVRIRLEMQA 164 (285)
Q Consensus 153 ~~lL~~RLe~l~ 164 (285)
...+..-++...
T Consensus 90 ~~~~~~~~~~~~ 101 (210)
T 2xdn_A 90 RKLLLQVFNELV 101 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888877666554
No 97
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=95.69 E-value=0.026 Score=49.32 Aligned_cols=76 Identities=16% Similarity=0.019 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHh-hc--CCCCCCCChHHHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRI-DS--GEDLKDLIPSQRISKLVRIR 159 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~i-D~--~~~l~~l~~rERI~~lL~~R 159 (285)
.+++||++|++++.++||...++.+.|++ ||.++ ....+++++ .. .........+++|..++..-
T Consensus 30 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (241)
T 2hxi_A 30 STEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVADRILLSAMDGYRPEGDWKQRLTAVALRL 109 (241)
T ss_dssp CHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999998 78776 334444433 11 11112346789999998887
Q ss_pred HhhccchhhhH
Q 036078 160 LEMQAPYISKW 170 (285)
Q Consensus 160 Le~l~P~~e~~ 170 (285)
++...-+....
T Consensus 110 ~~~~~~~p~~~ 120 (241)
T 2hxi_A 110 RESFGQQPQLA 120 (241)
T ss_dssp HHHTTTCHHHH
T ss_pred HHHHHhChHHH
Confidence 77776665444
No 98
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=95.67 E-value=0.077 Score=42.66 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.++|+. ||.++
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 58 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDK 58 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCCCH
Confidence 5579999999999999999999999999998 77766
No 99
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=95.61 E-value=0.12 Score=42.01 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHhHH-hhcCccHHHHHHHHHH----------hccHH--HHHHHHHH--------hhcCCCCCCCChHHH
Q 036078 93 RDEQARVLEASLRHV-AKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR--------IDSGEDLKDLIPSQR 151 (285)
Q Consensus 93 e~~r~rIL~aAL~lV-p~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~--------iD~~~~l~~l~~rER 151 (285)
+..+++||++|++++ .++||...++.++|++ ||.++ ....++++ ++... -....+.++
T Consensus 23 ~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 101 (212)
T 3nxc_A 23 RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLIL-KDEKDTTAR 101 (212)
T ss_dssp CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH-HHCCSHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHH
Confidence 446999999999965 8999999999999998 77766 22222221 11100 012367889
Q ss_pred HHHHHHHHHhhccchhh
Q 036078 152 ISKLVRIRLEMQAPYIS 168 (285)
Q Consensus 152 I~~lL~~RLe~l~P~~e 168 (285)
+..++..-++....+..
T Consensus 102 l~~~~~~~~~~~~~~~~ 118 (212)
T 3nxc_A 102 LRLIVLLLLGFGERNPG 118 (212)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhchh
Confidence 99998887777665543
No 100
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=95.60 E-value=0.3 Score=39.63 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..|++||++|++++.++||...++.++|+. ||.++
T Consensus 12 ~~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 57 (195)
T 2iu5_A 12 IITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQ 57 (195)
T ss_dssp SHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4579999999999999999999999999998 78766
No 101
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=95.50 E-value=0.03 Score=45.57 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH----hhcC--CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR----IDSG--EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~----iD~~--~~l~~l~~rERI~~ 154 (285)
+..+++||++|++++.++||. .++.++|+. ||.++- ...++++ +... .......+.++|..
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (194)
T 2q24_A 14 QRNRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCDSVPGLLAELPPAEALRA 92 (194)
T ss_dssp --CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHHTHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 445999999999999999999 999999998 787762 2222221 1110 00112457788888
Q ss_pred HHHHHHhhccchhh
Q 036078 155 LVRIRLEMQAPYIS 168 (285)
Q Consensus 155 lL~~RLe~l~P~~e 168 (285)
++..-++....+..
T Consensus 93 ~~~~~~~~~~~~~~ 106 (194)
T 2q24_A 93 WTRRFIDYATAKLG 106 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHH
Confidence 88887776655543
No 102
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=95.49 E-value=0.077 Score=42.29 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccH-HH--HHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMD-DC--LQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~-~~--~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
..|++||++|++++.++||...++.+.|++ ||.+ +- ...+++. +..... ....+.++|
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 84 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMD-ESSDPVEAI 84 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSHHHHH
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCHHHHH
Confidence 469999999999999999999999999998 8885 62 2222221 111100 124678999
Q ss_pred HHHHHHHHhhccch
Q 036078 153 SKLVRIRLEMQAPY 166 (285)
Q Consensus 153 ~~lL~~RLe~l~P~ 166 (285)
..++..-++....+
T Consensus 85 ~~~~~~~~~~~~~~ 98 (191)
T 1sgm_A 85 QLFIKKTASQFDNT 98 (191)
T ss_dssp HHHHHHHHHTTSSG
T ss_pred HHHHHHHHHhcccc
Confidence 99998888776654
No 103
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=95.48 E-value=0.39 Score=39.14 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.++|+. ||.++
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4579999999999999999999999999998 77666
No 104
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=95.30 E-value=0.41 Score=40.54 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHHhhc-CccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCCCCCChHHHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKH-GWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDLKDLIPSQRISKLVRIR 159 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~-GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l~~l~~rERI~~lL~~R 159 (285)
.|++||++|++++.++ ||...++.+.|++ ||.++ ....+++.+... .......+.++|..++..-
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~Ll~av~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQEPALCGEWYSDLLAFMENY 85 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCCCCCCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence 5899999999999999 9999999999998 78766 344444433221 1123346889999988877
Q ss_pred Hhhccchhh
Q 036078 160 LEMQAPYIS 168 (285)
Q Consensus 160 Le~l~P~~e 168 (285)
++...-+..
T Consensus 86 ~~~~~~~~~ 94 (220)
T 1z0x_A 86 YDLYQQFPC 94 (220)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHChh
Confidence 766655543
No 105
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=95.24 E-value=0.019 Score=47.36 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||.++- ...+++ .++... -....+.++|
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 91 (204)
T 2ibd_A 13 SGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIV-ASGLDSRATL 91 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHH
Confidence 3569999999999999999999999999998 787762 222221 111110 0234678899
Q ss_pred HHHHHHHHhhccchhh
Q 036078 153 SKLVRIRLEMQAPYIS 168 (285)
Q Consensus 153 ~~lL~~RLe~l~P~~e 168 (285)
..++..-++....+..
T Consensus 92 ~~~~~~~~~~~~~~~~ 107 (204)
T 2ibd_A 92 EALVTTSYEAIDASHS 107 (204)
T ss_dssp HHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhChH
Confidence 9888887776554433
No 106
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=95.23 E-value=0.14 Score=41.79 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI 152 (285)
+..|++||++|++++.++||...++.+.|++ ||.++- ...+++ .++.. .....+.++|
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 88 (189)
T 3vp5_A 11 DEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLSQETLEIHDLFFNL--LKDNSIEESL 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHGG--GGTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHH
Confidence 4579999999999999999999999999998 787662 222222 12211 1445677888
Q ss_pred HHHHHHHHhhccch
Q 036078 153 SKLVRIRLEMQAPY 166 (285)
Q Consensus 153 ~~lL~~RLe~l~P~ 166 (285)
...+..-++....+
T Consensus 89 ~~~~~~~~~~~~~~ 102 (189)
T 3vp5_A 89 DKYKYLLLENLIDS 102 (189)
T ss_dssp HHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhCC
Confidence 88877655554433
No 107
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=95.10 E-value=0.48 Score=38.63 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQRIS 153 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rERI~ 153 (285)
..|++||++|+++..++||...++.++|+. ||.++- ...+++ .+.... -....+.++|.
T Consensus 7 ~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 85 (197)
T 2gen_A 7 SRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGF-ARARSAEETVR 85 (197)
T ss_dssp -CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHH-HHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHH
Confidence 358999999999999999999999999998 787762 222222 111100 01345788888
Q ss_pred HHHHHHHhhccch
Q 036078 154 KLVRIRLEMQAPY 166 (285)
Q Consensus 154 ~lL~~RLe~l~P~ 166 (285)
.++..-++....+
T Consensus 86 ~~~~~~~~~~~~~ 98 (197)
T 2gen_A 86 LLVTSYIDWVVAN 98 (197)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 8887777665443
No 108
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=95.09 E-value=0.13 Score=42.37 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhc----------CCC
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDS----------GED 142 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~----------~~~ 142 (285)
+..+++||++|++++.++||. .++.++|+. ||.++- ...++++ +.. ...
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (224)
T 1t33_A 11 EQAKSQLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPA 89 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 456899999999999999999 999999998 777662 2222211 111 000
Q ss_pred CCCCChHHHHHHHHHHHHhhccch
Q 036078 143 LKDLIPSQRISKLVRIRLEMQAPY 166 (285)
Q Consensus 143 l~~l~~rERI~~lL~~RLe~l~P~ 166 (285)
.....++++|..++..-++....+
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~~~ 113 (224)
T 1t33_A 90 PDRDAIRELILLACKNMIMLLTQE 113 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSG
T ss_pred CCchHHHHHHHHHHHHHHHHHhcC
Confidence 111224588999888888776544
No 109
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=95.08 E-value=0.29 Score=40.87 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.++|++ ||.++
T Consensus 29 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 74 (226)
T 2pz9_A 29 DSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSK 74 (226)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcCCH
Confidence 4569999999999999999999999999998 78766
No 110
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=95.07 E-value=0.1 Score=45.53 Aligned_cols=75 Identities=5% Similarity=0.016 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCC--CCCChHHHHHHHHH
Q 036078 94 DEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDL--KDLIPSQRISKLVR 157 (285)
Q Consensus 94 ~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l--~~l~~rERI~~lL~ 157 (285)
..+++||++|++++.++||...++.+.|++ ||.++ ....+++.+-.. ..+ ......++|..++.
T Consensus 19 ~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~av~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (243)
T 2g7l_A 19 LSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDALLGEVDLTGAGAEEDWREQLRAVLT 98 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHHTTSSCSSCC---CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHH
Confidence 359999999999999999999999999998 78766 345555554322 122 33467899998888
Q ss_pred HHHhhccchhh
Q 036078 158 IRLEMQAPYIS 168 (285)
Q Consensus 158 ~RLe~l~P~~e 168 (285)
.-++.+..+..
T Consensus 99 ~~~~~~~~~p~ 109 (243)
T 2g7l_A 99 SYTLVLFAHPQ 109 (243)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHChH
Confidence 87777665544
No 111
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=94.82 E-value=0.05 Score=44.82 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhc----C--CCC-CCCChHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDS----G--EDL-KDLIPSQRIS 153 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~----~--~~l-~~l~~rERI~ 153 (285)
+..|++||++|+++..++||...++.++|+. ||.++ ....++++... . ... ....+.++|.
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T 3cdl_A 8 DQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRLWNCAPPQSEVVYRPLVSLREQLL 87 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHHHHTC----CCSCCTTSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence 4569999999999999999999999999998 88777 23333333211 1 111 2346788998
Q ss_pred HHHHHHHhhc
Q 036078 154 KLVRIRLEMQ 163 (285)
Q Consensus 154 ~lL~~RLe~l 163 (285)
..+..-++..
T Consensus 88 ~~~~~~~~~~ 97 (203)
T 3cdl_A 88 ELLWGKMRNL 97 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766654
No 112
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=94.52 E-value=0.11 Score=41.63 Aligned_cols=76 Identities=9% Similarity=0.232 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcCCCC------CCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSGEDL------KDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~~~l------~~l~~rERI~~ 154 (285)
+..|++||++|++++.++||...++.+.|++ ||.++ ....+++.......+ ....+.++|..
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (186)
T 2jj7_A 6 EQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPINALRE 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHSCSSCCCCHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4568999999999999999999999999998 77766 344555544211111 24567899999
Q ss_pred HHHHHHhhccchhh
Q 036078 155 LVRIRLEMQAPYIS 168 (285)
Q Consensus 155 lL~~RLe~l~P~~e 168 (285)
++..-++....+..
T Consensus 86 ~~~~~~~~~~~~~~ 99 (186)
T 2jj7_A 86 YLTVFTTHIKENPE 99 (186)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCHH
Confidence 88887776655443
No 113
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=94.33 E-value=0.086 Score=44.94 Aligned_cols=76 Identities=11% Similarity=-0.010 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH----HhhcC-CCCCCCChHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID----RIDSG-EDLKDLIPSQRISKLVR 157 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~----~iD~~-~~l~~l~~rERI~~lL~ 157 (285)
.|++||++|++++.++||...++.+.|++ ||+++ ....+++ .+... ........+++|..++.
T Consensus 4 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (202)
T 4ac0_A 4 DKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAIEMLDRHHTHFCPLEGESWQDFLRNNAK 83 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHCCCSSCCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCchhHHhhcCCHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Confidence 38999999999999999999999999998 78776 2333333 32111 11224568899999999
Q ss_pred HHHhhccchhhhH
Q 036078 158 IRLEMQAPYISKW 170 (285)
Q Consensus 158 ~RLe~l~P~~e~~ 170 (285)
.-++.+.-|....
T Consensus 84 ~~~~~~~~~p~~~ 96 (202)
T 4ac0_A 84 SFRCALLSHRDGA 96 (202)
T ss_dssp HHHHHHHTSTTHH
T ss_pred HHHHHHHHCccHH
Confidence 8888887776444
No 114
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=94.32 E-value=0.29 Score=41.52 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhc-----CCCCCCCChHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDS-----GEDLKDLIPSQRISKLVR 157 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~-----~~~l~~l~~rERI~~lL~ 157 (285)
.+++||++|++++.++|+...++.+.|++ ||.++ ....+++++-. .........+++|...+.
T Consensus 5 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tlY~~f~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (207)
T 2vpr_A 5 DKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAK 84 (207)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHHHHHHHHCCCCSCCTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Confidence 38999999999999999999999999998 78776 33444433211 111234568899988888
Q ss_pred HHHhhccchhhh
Q 036078 158 IRLEMQAPYISK 169 (285)
Q Consensus 158 ~RLe~l~P~~e~ 169 (285)
.-.+.+..|...
T Consensus 85 ~~~~~~~~~~~~ 96 (207)
T 2vpr_A 85 SFRQALLMYRDG 96 (207)
T ss_dssp HHHHHHHHSTTH
T ss_pred HHHHHHHHCCcH
Confidence 777776666543
No 115
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=94.27 E-value=0.084 Score=43.06 Aligned_cols=71 Identities=8% Similarity=-0.021 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|+. ||.++- ...++++ ++....-....+.++|
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (199)
T 2o7t_A 7 LKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQLQAISTFPTDPEGVW 86 (199)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 4579999999999999999999999999998 787762 2222211 1110000123567888
Q ss_pred HHHHHHHHhhc
Q 036078 153 SKLVRIRLEMQ 163 (285)
Q Consensus 153 ~~lL~~RLe~l 163 (285)
..++..-++..
T Consensus 87 ~~~~~~~~~~~ 97 (199)
T 2o7t_A 87 TSFNQLLFDRG 97 (199)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 88887655544
No 116
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=94.23 E-value=0.64 Score=39.22 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC-----CCCCCCChHHHHHHHHHH
Q 036078 96 QARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG-----EDLKDLIPSQRISKLVRI 158 (285)
Q Consensus 96 r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~-----~~l~~l~~rERI~~lL~~ 158 (285)
+++|+++|++++.++|+...++.+.|++ ||.++ ....+++.+... ....+...+++|..++..
T Consensus 4 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hf~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (209)
T 3bqy_A 4 RARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVDGVADAAGATGDGDWSERTARLARA 83 (209)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHTTTGGGGGCSTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCcchHHhhcCCHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999999998 78766 344444443221 112334678999998888
Q ss_pred HHhhccchhhhH
Q 036078 159 RLEMQAPYISKW 170 (285)
Q Consensus 159 RLe~l~P~~e~~ 170 (285)
-++.+..|....
T Consensus 84 ~~~~~~~~p~~~ 95 (209)
T 3bqy_A 84 LRAALLAHRDGA 95 (209)
T ss_dssp HHHHHHTSTTHH
T ss_pred HHHHHHHChhHH
Confidence 777766665433
No 117
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=94.17 E-value=0.83 Score=40.48 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCC-CCCChHHHHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDL-KDLIPSQRISKLVR 157 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l-~~l~~rERI~~lL~ 157 (285)
+..+++||++|++++.++||...++.+.|++ ||.++ ....+++.+-.. ... .....+++|..++.
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~hF~~K~~Ll~av~~~~~~~~~~~~~~~~~~~~~l~~~~~ 105 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYYYVPTKEDLVELMVDEVIGETRLPDRPGPDWRAALTLAAN 105 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHTTCCSHHHHHHHHHHHHHTTCCCCSSCCSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHH
Confidence 3459999999999999999999999999998 77766 344555544321 112 22368899999888
Q ss_pred HHHhhccchhh
Q 036078 158 IRLEMQAPYIS 168 (285)
Q Consensus 158 ~RLe~l~P~~e 168 (285)
.-++.+..|..
T Consensus 106 ~~~~~~~~~p~ 116 (267)
T 2y2z_A 106 EKRALWLRHPW 116 (267)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCHH
Confidence 87777666544
No 118
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=94.17 E-value=0.41 Score=41.54 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCCCCC-ChHHHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDLKDL-IPSQRISKLVRIR 159 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l~~l-~~rERI~~lL~~R 159 (285)
.+++||++|++++.++|+...++.+.|++ ||.++ ....+++.+-.. ...... ..+++|..++..-
T Consensus 7 tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (234)
T 2opt_A 7 TQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDIVLTEVEVPEPEPGRWAEQVKEMCRSL 86 (234)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHGGGCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999998 77766 344455444221 111223 6789999988887
Q ss_pred Hhhccchhh
Q 036078 160 LEMQAPYIS 168 (285)
Q Consensus 160 Le~l~P~~e 168 (285)
++.+.-|..
T Consensus 87 ~~~~~~~p~ 95 (234)
T 2opt_A 87 RRMFLAHRD 95 (234)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHChh
Confidence 776666543
No 119
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=94.16 E-value=0.014 Score=47.70 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHH--------HhhcCCCCCCCChH
Q 036078 90 VEYRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLID--------RIDSGEDLKDLIPS 149 (285)
Q Consensus 90 ~~~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~--------~iD~~~~l~~l~~r 149 (285)
.+.+..+++||++|++++.++|| ..++.++|++ ||.++ ....+++ .++. ......+.
T Consensus 12 ~~~~~~r~~Il~aA~~lf~~~G~-~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~--~~~~~~~~ 88 (199)
T 2rek_A 12 ADARRNYDRIIEAAAAEVARHGA-DASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARS--LAAEHPPA 88 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HhccCCHH
Confidence 34456799999999999999999 8999999998 78766 2222222 1111 01123577
Q ss_pred HHHHHHHHHHHhhccch
Q 036078 150 QRISKLVRIRLEMQAPY 166 (285)
Q Consensus 150 ERI~~lL~~RLe~l~P~ 166 (285)
++|..++..-++...-+
T Consensus 89 ~~l~~~~~~~~~~~~~~ 105 (199)
T 2rek_A 89 TALTRWLTSLAVFGAVT 105 (199)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88888887766655443
No 120
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=94.01 E-value=0.074 Score=42.38 Aligned_cols=36 Identities=8% Similarity=0.261 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.+.|+. ||.++
T Consensus 13 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (156)
T 3ljl_A 13 EITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKK 58 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSST
T ss_pred HhHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCCH
Confidence 5579999999999999999999999999998 78766
No 121
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=93.92 E-value=0.57 Score=39.76 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.++|+. ||.++
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sK 67 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRYFETR 67 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCCH
Confidence 5679999999999999999999999999998 78766
No 122
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=93.85 E-value=0.027 Score=46.28 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
+..+++||++|++++.++||...++.++|+. ||.++- ...+++. +.... -....+.++|
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~l 88 (212)
T 2ras_A 10 DAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVL-ASDLPPRRKM 88 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHH-HSCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHH
Confidence 5579999999999999999999999999998 787762 2222222 11100 0123678888
Q ss_pred HHHHHHHHhh
Q 036078 153 SKLVRIRLEM 162 (285)
Q Consensus 153 ~~lL~~RLe~ 162 (285)
..++..-++.
T Consensus 89 ~~~~~~~~~~ 98 (212)
T 2ras_A 89 YEFFARRFVV 98 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766554
No 123
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=93.78 E-value=0.03 Score=46.36 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC------CCCCCCChHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG------EDLKDLIPSQRISKLV 156 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~------~~l~~l~~rERI~~lL 156 (285)
.+++||++|+++..++||...++.++|+. ||.++ ....++++.... ..+....+.++|..++
T Consensus 12 ~r~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (202)
T 2i10_A 12 DDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRPTAHEAVLDFL 91 (202)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHCSCCHHHHHHHHTSSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 37899999999999999999999999998 78776 233333332110 0011346788998888
Q ss_pred HHHHhhcc
Q 036078 157 RIRLEMQA 164 (285)
Q Consensus 157 ~~RLe~l~ 164 (285)
..-++...
T Consensus 92 ~~~~~~~~ 99 (202)
T 2i10_A 92 TGRVEVFT 99 (202)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 87776543
No 124
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=93.61 E-value=1.1 Score=37.68 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhcC--CCC-CCCChHHHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDSG--EDL-KDLIPSQRISKLVRIR 159 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~~--~~l-~~l~~rERI~~lL~~R 159 (285)
.+++||++|++++.++| ..++.+.|++ ||.++ ....+++.+-.. ..+ ......++|..++..-
T Consensus 12 ~r~~Il~aA~~l~~~~G--~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (213)
T 2g7g_A 12 DRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREIDGSAFERLPWDEAFSEWARSY 89 (213)
T ss_dssp CHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCCCGGGGTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcC--CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Confidence 48999999999999999 8899999998 78777 344444443221 111 3456789999999888
Q ss_pred HhhccchhhhH
Q 036078 160 LEMQAPYISKW 170 (285)
Q Consensus 160 Le~l~P~~e~~ 170 (285)
++.+..|....
T Consensus 90 ~~~~~~~p~~~ 100 (213)
T 2g7g_A 90 RAAFSRHPTAI 100 (213)
T ss_dssp HHHHHTCGGGH
T ss_pred HHHHHHChhHH
Confidence 87776665443
No 125
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=93.54 E-value=0.71 Score=38.76 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|++++.++||...++.+.|+. ||.++
T Consensus 15 ~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~K 60 (216)
T 2oi8_A 15 TQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGR 60 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 5679999999999999999999999999998 78766
No 126
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=93.54 E-value=0.017 Score=47.61 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHHHh----hcC--CCCCCCChHHHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLIDRI----DSG--EDLKDLIPSQRISK 154 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~~i----D~~--~~l~~l~~rERI~~ 154 (285)
+..+++||++|++++.++|+ ..++.++|++ ||.++- ...+++.. ... ..+....+.++|..
T Consensus 12 ~~~r~~Il~aA~~lf~~~G~-~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (196)
T 2qwt_A 12 ARNRARVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLAAEGPGEALFV 90 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45689999999999999999 8999999998 787662 22222211 100 00112356788888
Q ss_pred HHHHHHhhccchh
Q 036078 155 LVRIRLEMQAPYI 167 (285)
Q Consensus 155 lL~~RLe~l~P~~ 167 (285)
++..-++....+.
T Consensus 91 ~~~~~~~~~~~~~ 103 (196)
T 2qwt_A 91 FMRDMVRSAAADY 103 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccH
Confidence 8877666655543
No 127
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=93.21 E-value=2.2 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|+++..++||...++.++|+. ||+++
T Consensus 11 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~sK 56 (205)
T 1rkt_A 11 DKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSST 56 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhCCCH
Confidence 3468999999999999999999999999998 78776
No 128
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=93.20 E-value=3 Score=34.21 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHhH-HhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRH-VAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~l-Vp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++|++++.++ +.++||...++.++|+. ||.++
T Consensus 18 ~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K 64 (185)
T 3o60_A 18 QKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEI 64 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSST
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 34689999999999 89999999999999998 77766
No 129
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=92.88 E-value=0.15 Score=43.19 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------Hh----hcC-CCC--CC
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RI----DSG-EDL--KD 145 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~i----D~~-~~l--~~ 145 (285)
+..|++||++|+++..++||...++.++|+. ||.++- ..++++ .+ +.. ... ..
T Consensus 6 ~~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~hF~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (235)
T 2fbq_A 6 SETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPEAQH 85 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 3468999999999999999999999999998 787762 222221 11 110 010 23
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 036078 146 LIPSQRISKLVRIRLEMQA 164 (285)
Q Consensus 146 l~~rERI~~lL~~RLe~l~ 164 (285)
..+.+.+...+..-++...
T Consensus 86 ~~~~~~l~~~~~~~~~~~~ 104 (235)
T 2fbq_A 86 ATLEDLLHLLVSQAMAVKP 104 (235)
T ss_dssp CCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4677888888877777554
No 130
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=92.47 E-value=0.76 Score=37.70 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..+++||++|+++..++||...++.++|++ ||.++
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~sK 52 (202)
T 2d6y_A 7 EATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNK 52 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4579999999999999999999999999998 77766
No 131
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=92.44 E-value=0.27 Score=41.52 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHHhhc----C-CCCCCCChHHHHHHHHH
Q 036078 95 EQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDRIDS----G-EDLKDLIPSQRISKLVR 157 (285)
Q Consensus 95 ~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~iD~----~-~~l~~l~~rERI~~lL~ 157 (285)
.+++|+++|++++.++|+...++.+.|++ ||.++ ....+++.+-. . ........+++|..++.
T Consensus 4 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (207)
T 2xpw_A 4 NRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRNNAM 83 (207)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCSCCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Confidence 38999999999999999999999999998 78776 33344333211 1 11223467899988887
Q ss_pred HHHhhccchhh
Q 036078 158 IRLEMQAPYIS 168 (285)
Q Consensus 158 ~RLe~l~P~~e 168 (285)
.-.+.+..|..
T Consensus 84 ~~~~~~~~~p~ 94 (207)
T 2xpw_A 84 SFRRALLRYRD 94 (207)
T ss_dssp HHHHHHHTSTT
T ss_pred HHHHHHHHCCc
Confidence 76666665543
No 132
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=92.30 E-value=0.29 Score=39.86 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH--HHHHHHHH--------hhcCCCCCCCChHHHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD--CLQRLIDR--------IDSGEDLKDLIPSQRI 152 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~--~~~~L~~~--------iD~~~~l~~l~~rERI 152 (285)
+..|++||++|+++..++||...++.++|+. ||.++ ....++++ ++... -....+.+++
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~-~~~~~~~~~l 89 (197)
T 2hyt_A 11 EETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAIS-DTAEDDWEGF 89 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH-HHCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHH
Confidence 4568999999999999999999999999998 78776 22222221 11100 0123567888
Q ss_pred HHHHHHHHhh
Q 036078 153 SKLVRIRLEM 162 (285)
Q Consensus 153 ~~lL~~RLe~ 162 (285)
...+..-++.
T Consensus 90 ~~~~~~~~~~ 99 (197)
T 2hyt_A 90 RCRCRAYLEM 99 (197)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 8777766653
No 133
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.81 E-value=1.9 Score=34.32 Aligned_cols=36 Identities=8% Similarity=0.288 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHH
Q 036078 93 RDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDD 128 (285)
Q Consensus 93 e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~ 128 (285)
+..|++||++|++++.++||...++.+.|++ ||.++
T Consensus 2 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 47 (189)
T 3geu_A 2 NAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSK 47 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHhCCH
Confidence 3568999999999999999999999999998 78766
No 134
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=90.29 E-value=0.48 Score=37.81 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHhHHhhcCccHHHHHHHHHH----------hccHHH--HHHHHH--------HhhcCCCCCCCChHHH
Q 036078 92 YRDEQARVLEASLRHVAKHGWGEAAMIAGARD----------FFMDDC--LQRLID--------RIDSGEDLKDLIPSQR 151 (285)
Q Consensus 92 ~e~~r~rIL~aAL~lVp~~GWt~~AL~~aA~d----------~F~~~~--~~~L~~--------~iD~~~~l~~l~~rER 151 (285)
.+..+++||++|++++.++ ...++.++|+. ||.++- ...+++ .++... -....+.++
T Consensus 12 ~~~~r~~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (190)
T 2v57_A 12 RERTRRAILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERAD-PTSGPVDAA 88 (190)
T ss_dssp -CHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHC-TTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHH
Confidence 3567999999999999998 88888888887 787762 222222 221111 123468899
Q ss_pred HHHHHHHHHhh
Q 036078 152 ISKLVRIRLEM 162 (285)
Q Consensus 152 I~~lL~~RLe~ 162 (285)
|..++..-++.
T Consensus 89 l~~~~~~~~~~ 99 (190)
T 2v57_A 89 LRRVVESQLDL 99 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhc
Confidence 99998887766
No 135
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=29.32 E-value=2.5e+02 Score=23.36 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHhhccchh-hhHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHH
Q 036078 147 IPSQRISKLVRIRLEMQAPYI-SKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDEASDIDWYVKRTVLGGIYSTTE 225 (285)
Q Consensus 147 ~~rERI~~lL~~RLe~l~P~~-e~~~qaLa~lalP~n~~~sl~~l~~laD~Iw~~AGD~StD~~wYtKRa~La~IY~ste 225 (285)
+.-.+|+.-|..||...-||. .+..+-+..++-..+++...+...-.-|+=-.-..+.+.+- -+|.+|+|-|.++.
T Consensus 6 ~tla~Lk~QIe~kL~~~h~Yl~i~In~~L~~Lld~~~ipe~~k~aclaIDTsmrv~d~i~~n~---K~riVLaGD~~Sa~ 82 (147)
T 3aqb_A 6 RYLHKIELELNRLTSRYPFFKKIAFDAEIIKLVDDLNVDENVKCAIVAIDTSMRMQDFINEDN---KDSFVLSTDVLSAL 82 (147)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCCCCCHHHHHHHHTCSSCHHHHHHHHHHHHHHHHGGGCCTTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHhcCcHHHHHhhccCCChHHhhheeEeccHHHhhcccccCC---ccceEeehHHHHHH
Confidence 344678888999998777764 23333355555556666555544433333222222222222 66888999999998
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 036078 226 IYMLTDSSPDFCDTSRFLDDRVRDAFDLK 254 (285)
Q Consensus 226 l~wL~D~S~d~~~T~aFLdrRL~~a~~l~ 254 (285)
.|-|-- -+++..-..-+.+.|.++-.+.
T Consensus 83 fY~lLa-~~~~~~~i~~lS~aI~eVNE~K 110 (147)
T 3aqb_A 83 FYKYLS-QPFYQHDFLVLTDCVSRINELK 110 (147)
T ss_dssp HHHHTB-TTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-ChhhHHHHHHHHHHHHHHHHHH
Confidence 887764 3455555555555555554443
Done!