Query 036079
Match_columns 1399
No_of_seqs 835 out of 5817
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.2E-79 2E-83 749.4 46.8 617 7-652 3-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-62 3E-67 646.6 54.5 457 148-647 183-663 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-40 2.3E-45 377.7 14.2 278 154-438 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 6.9E-38 1.5E-42 416.7 27.6 497 530-1260 76-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 9.4E-38 2E-42 415.4 28.8 104 546-651 68-174 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 2.7E-29 5.8E-34 262.5 -12.4 457 539-1115 60-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 2E-28 4.3E-33 256.0 -8.3 440 531-1094 76-541 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.4E-26 5.1E-31 251.4 5.3 358 548-1064 79-448 (873)
9 PLN03210 Resistant to P. syrin 99.9 1.4E-23 3.1E-28 277.5 24.9 342 975-1376 580-944 (1153)
10 KOG0618 Serine/threonine phosp 99.9 5.9E-26 1.3E-30 262.8 -3.4 434 544-1093 42-488 (1081)
11 KOG4194 Membrane glycoprotein 99.9 2.4E-25 5.1E-30 243.6 1.0 347 529-992 84-448 (873)
12 KOG0444 Cytoskeletal regulator 99.9 3.3E-26 7.1E-31 251.2 -6.5 362 545-1049 5-379 (1255)
13 KOG0618 Serine/threonine phosp 99.9 1.2E-25 2.6E-30 260.2 -6.8 455 539-1116 13-488 (1081)
14 KOG0444 Cytoskeletal regulator 99.9 1.5E-23 3.3E-28 230.5 -4.0 364 936-1355 5-378 (1255)
15 PRK15387 E3 ubiquitin-protein 99.6 6.6E-15 1.4E-19 179.3 15.4 79 547-635 201-279 (788)
16 KOG4237 Extracellular matrix p 99.6 8.7E-17 1.9E-21 169.5 -2.7 125 530-655 74-202 (498)
17 KOG4237 Extracellular matrix p 99.6 7.1E-17 1.5E-21 170.2 -3.6 120 548-668 68-193 (498)
18 PRK15387 E3 ubiquitin-protein 99.6 2E-14 4.3E-19 175.2 16.1 258 727-1095 202-459 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 2.5E-13 5.4E-18 167.2 12.6 81 548-636 179-259 (754)
20 PRK04841 transcriptional regul 99.4 4.5E-12 9.8E-17 168.8 23.3 294 148-486 13-332 (903)
21 KOG0617 Ras suppressor protein 99.4 3.5E-15 7.6E-20 138.6 -4.7 108 543-651 29-137 (264)
22 PRK15370 E3 ubiquitin-protein 99.4 5.3E-13 1.1E-17 164.4 11.0 243 939-1277 179-426 (754)
23 KOG0617 Ras suppressor protein 99.4 3.1E-15 6.8E-20 138.9 -7.4 120 530-651 40-160 (264)
24 PRK00411 cdc6 cell division co 99.4 4.8E-11 1E-15 141.6 25.1 302 147-465 28-358 (394)
25 TIGR02928 orc1/cdc6 family rep 99.3 4.7E-10 1E-14 131.7 26.9 302 148-465 14-350 (365)
26 COG2909 MalT ATP-dependent tra 99.2 3.1E-10 6.6E-15 133.7 19.6 298 148-488 18-340 (894)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.8E-14 122.0 20.7 182 176-363 43-242 (269)
28 PRK00080 ruvB Holliday junctio 99.1 1.9E-09 4E-14 123.3 18.0 280 148-466 24-311 (328)
29 PTZ00112 origin recognition co 99.1 5.1E-09 1.1E-13 124.2 21.6 305 148-465 754-1086(1164)
30 PF01637 Arch_ATPase: Archaeal 99.1 2.1E-10 4.6E-15 126.0 9.5 196 151-358 1-233 (234)
31 TIGR00635 ruvB Holliday juncti 99.1 1.9E-09 4.2E-14 122.8 17.6 278 149-466 4-290 (305)
32 KOG4341 F-box protein containi 99.1 3E-12 6.6E-17 137.2 -6.6 89 1008-1096 140-231 (483)
33 cd00116 LRR_RI Leucine-rich re 99.0 9E-11 2E-15 135.8 1.3 33 855-887 250-289 (319)
34 KOG4341 F-box protein containi 99.0 1.1E-11 2.3E-16 133.1 -5.9 301 961-1300 140-459 (483)
35 KOG4658 Apoptotic ATPase [Sign 98.9 6.6E-10 1.4E-14 139.6 6.4 125 959-1090 523-651 (889)
36 COG3899 Predicted ATPase [Gene 98.9 1.1E-08 2.5E-13 129.3 16.6 312 151-485 2-385 (849)
37 cd00116 LRR_RI Leucine-rich re 98.9 3.2E-10 7E-15 131.1 1.3 88 541-628 45-148 (319)
38 PF05729 NACHT: NACHT domain 98.9 5E-09 1.1E-13 107.8 9.6 143 177-326 1-163 (166)
39 KOG0532 Leucine-rich repeat (L 98.8 4E-10 8.6E-15 125.6 -3.4 99 550-651 78-176 (722)
40 PTZ00202 tuzin; Provisional 98.8 6E-07 1.3E-11 99.2 20.8 172 142-325 255-433 (550)
41 COG2256 MGS1 ATPase related to 98.8 4E-08 8.6E-13 106.5 11.5 173 146-355 27-208 (436)
42 KOG0532 Leucine-rich repeat (L 98.7 3.4E-10 7.5E-15 126.1 -5.3 179 538-784 89-270 (722)
43 COG1474 CDC6 Cdc6-related prot 98.7 6E-07 1.3E-11 102.0 18.9 294 149-465 17-334 (366)
44 PRK15386 type III secretion pr 98.7 3.5E-08 7.5E-13 110.4 8.6 167 1193-1384 51-222 (426)
45 PRK06893 DNA replication initi 98.7 2.5E-07 5.4E-12 99.3 13.7 156 176-363 39-207 (229)
46 PF14580 LRR_9: Leucine-rich r 98.6 1.1E-08 2.4E-13 102.2 2.6 108 543-654 15-126 (175)
47 COG4886 Leucine-rich repeat (L 98.6 2.5E-08 5.3E-13 118.7 5.0 108 543-652 112-220 (394)
48 PRK13342 recombination factor 98.6 2.7E-07 5.8E-12 108.9 13.4 178 149-361 12-198 (413)
49 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.5E-13 110.8 1.6 172 917-1091 142-336 (505)
50 PRK14961 DNA polymerase III su 98.6 1.3E-06 2.8E-11 101.0 17.9 192 149-356 16-217 (363)
51 PRK15386 type III secretion pr 98.6 1.5E-07 3.1E-12 105.5 8.6 140 1214-1372 48-187 (426)
52 PRK07003 DNA polymerase III su 98.6 8E-07 1.7E-11 106.1 15.0 195 149-360 16-222 (830)
53 PRK12402 replication factor C 98.6 9.6E-07 2.1E-11 102.7 15.8 200 149-359 15-226 (337)
54 TIGR03420 DnaA_homol_Hda DnaA 98.6 7.8E-07 1.7E-11 96.6 14.0 172 154-363 22-205 (226)
55 KOG1259 Nischarin, modulator o 98.5 1.3E-08 2.8E-13 104.2 -0.2 106 543-652 280-385 (490)
56 PRK14960 DNA polymerase III su 98.5 1.3E-06 2.8E-11 103.3 16.1 192 149-357 15-217 (702)
57 PRK05564 DNA polymerase III su 98.5 1.7E-06 3.8E-11 98.2 16.9 180 149-359 4-190 (313)
58 PRK04195 replication factor C 98.5 4E-06 8.7E-11 101.1 20.6 247 149-438 14-271 (482)
59 PRK14949 DNA polymerase III su 98.5 1.4E-06 3E-11 106.4 16.3 195 149-359 16-220 (944)
60 PF13401 AAA_22: AAA domain; P 98.5 1.8E-07 3.8E-12 91.6 7.2 118 175-295 3-125 (131)
61 PF14580 LRR_9: Leucine-rich r 98.5 7.6E-08 1.6E-12 96.3 4.5 117 530-651 26-150 (175)
62 PF13191 AAA_16: AAA ATPase do 98.5 2.4E-07 5.1E-12 97.3 7.9 51 150-203 1-51 (185)
63 PRK14963 DNA polymerase III su 98.5 5.7E-07 1.2E-11 106.9 11.9 198 149-356 14-214 (504)
64 KOG2028 ATPase related to the 98.5 1.4E-06 3E-11 92.2 12.9 176 146-353 141-330 (554)
65 TIGR02903 spore_lon_C ATP-depe 98.5 1.1E-05 2.3E-10 99.3 22.6 204 149-362 154-398 (615)
66 PRK12323 DNA polymerase III su 98.5 2.3E-06 5E-11 101.0 15.5 195 149-359 16-225 (700)
67 KOG3207 Beta-tubulin folding c 98.5 5.1E-08 1.1E-12 106.0 1.5 93 722-815 218-312 (505)
68 KOG2120 SCF ubiquitin ligase, 98.5 8.2E-09 1.8E-13 105.8 -4.3 159 959-1117 185-351 (419)
69 PRK14956 DNA polymerase III su 98.4 7.4E-07 1.6E-11 102.6 10.7 195 149-355 18-218 (484)
70 KOG1259 Nischarin, modulator o 98.4 6E-08 1.3E-12 99.5 1.4 125 526-655 287-413 (490)
71 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.8E-12 75.5 4.9 58 547-604 1-60 (61)
72 PLN03025 replication factor C 98.4 3.2E-06 7E-11 96.3 15.3 181 149-355 13-196 (319)
73 COG3903 Predicted ATPase [Gene 98.4 4.2E-07 9.1E-12 99.7 7.1 291 175-486 13-314 (414)
74 PRK14957 DNA polymerase III su 98.4 5E-06 1.1E-10 98.9 16.2 186 149-362 16-224 (546)
75 PRK14962 DNA polymerase III su 98.4 5.2E-06 1.1E-10 98.0 15.9 187 149-363 14-223 (472)
76 PLN03150 hypothetical protein; 98.4 3.4E-07 7.4E-12 113.5 6.4 104 548-651 419-525 (623)
77 PRK06645 DNA polymerase III su 98.4 9.1E-06 2E-10 96.2 17.7 195 149-356 21-226 (507)
78 PRK00440 rfc replication facto 98.4 6.5E-06 1.4E-10 94.9 16.3 181 149-357 17-201 (319)
79 PF05496 RuvB_N: Holliday junc 98.4 1.5E-05 3.2E-10 81.3 16.4 182 148-363 23-225 (233)
80 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.6E-11 86.5 10.6 125 152-297 1-131 (151)
81 PRK07994 DNA polymerase III su 98.4 5.4E-06 1.2E-10 100.1 15.6 195 149-359 16-220 (647)
82 PRK05896 DNA polymerase III su 98.3 5.4E-06 1.2E-10 98.4 14.9 197 149-361 16-223 (605)
83 PRK08691 DNA polymerase III su 98.3 6.2E-06 1.3E-10 98.8 15.4 197 149-358 16-219 (709)
84 PRK14951 DNA polymerase III su 98.3 9.1E-06 2E-10 98.0 16.6 194 149-358 16-224 (618)
85 PRK14964 DNA polymerase III su 98.3 1.1E-05 2.3E-10 94.6 16.7 180 149-356 13-214 (491)
86 KOG2227 Pre-initiation complex 98.3 1.6E-05 3.5E-10 88.1 16.7 214 147-363 148-376 (529)
87 PRK08727 hypothetical protein; 98.3 7.3E-06 1.6E-10 88.3 14.1 148 177-356 42-201 (233)
88 PRK07471 DNA polymerase III su 98.3 1.4E-05 3E-10 91.3 17.0 198 148-360 18-239 (365)
89 PLN03150 hypothetical protein; 98.3 6.7E-07 1.5E-11 111.0 6.9 106 529-634 424-532 (623)
90 PRK14958 DNA polymerase III su 98.3 8.1E-06 1.8E-10 97.5 15.6 182 149-358 16-219 (509)
91 TIGR02397 dnaX_nterm DNA polym 98.3 1.5E-05 3.3E-10 93.3 17.7 183 149-360 14-219 (355)
92 PRK09112 DNA polymerase III su 98.3 1.7E-05 3.7E-10 90.0 17.2 199 147-360 21-241 (351)
93 PRK08084 DNA replication initi 98.3 1E-05 2.3E-10 87.2 14.6 156 176-363 45-213 (235)
94 PF13173 AAA_14: AAA domain 98.3 1.2E-06 2.7E-11 84.5 6.6 119 177-318 3-127 (128)
95 TIGR00678 holB DNA polymerase 98.3 1.6E-05 3.5E-10 83.0 15.5 91 255-355 95-187 (188)
96 PRK08903 DnaA regulatory inact 98.3 8.9E-06 1.9E-10 88.0 13.8 153 175-363 41-203 (227)
97 PRK13341 recombination factor 98.3 6.7E-06 1.5E-10 101.7 14.2 172 149-354 28-212 (725)
98 COG4886 Leucine-rich repeat (L 98.3 5.3E-07 1.2E-11 107.3 4.3 103 550-654 96-199 (394)
99 KOG0989 Replication factor C, 98.3 4.5E-06 9.7E-11 87.3 10.3 191 148-360 35-232 (346)
100 KOG2120 SCF ubiquitin ligase, 98.3 5.2E-08 1.1E-12 100.1 -3.7 156 959-1115 210-374 (419)
101 PRK07940 DNA polymerase III su 98.3 1.8E-05 3.8E-10 91.2 16.0 194 149-359 5-213 (394)
102 PF13855 LRR_8: Leucine rich r 98.3 1E-06 2.2E-11 72.0 4.3 58 570-628 1-60 (61)
103 cd01128 rho_factor Transcripti 98.2 1.9E-06 4.2E-11 92.2 7.1 92 175-267 15-114 (249)
104 PRK14969 DNA polymerase III su 98.2 1.6E-05 3.4E-10 95.8 15.7 181 149-360 16-222 (527)
105 COG2255 RuvB Holliday junction 98.2 1.8E-05 4E-10 81.9 13.4 178 148-359 25-223 (332)
106 PRK09111 DNA polymerase III su 98.2 2.2E-05 4.9E-10 95.1 16.3 200 148-360 23-234 (598)
107 PRK14955 DNA polymerase III su 98.2 2.1E-05 4.6E-10 92.1 15.1 200 149-357 16-226 (397)
108 PRK09087 hypothetical protein; 98.2 1.9E-05 4.1E-10 84.1 13.4 145 176-363 44-199 (226)
109 PRK07133 DNA polymerase III su 98.2 3.7E-05 7.9E-10 93.5 17.1 193 149-360 18-221 (725)
110 PRK09376 rho transcription ter 98.1 4.8E-06 1E-10 92.4 7.6 103 159-267 157-267 (416)
111 PRK05642 DNA replication initi 98.1 3.8E-05 8.3E-10 82.7 14.4 156 176-363 45-212 (234)
112 PRK14959 DNA polymerase III su 98.1 4.5E-05 9.8E-10 91.3 16.2 199 149-363 16-225 (624)
113 PF00308 Bac_DnaA: Bacterial d 98.1 3.1E-05 6.7E-10 82.3 13.5 189 149-363 9-212 (219)
114 PF05621 TniB: Bacterial TniB 98.1 5.5E-05 1.2E-09 81.2 15.1 199 150-356 35-258 (302)
115 KOG1909 Ran GTPase-activating 98.1 2.8E-07 6E-12 97.7 -2.3 41 539-579 22-67 (382)
116 PRK14950 DNA polymerase III su 98.1 4.3E-05 9.2E-10 94.0 15.7 198 149-361 16-223 (585)
117 PRK14952 DNA polymerase III su 98.1 7.6E-05 1.6E-09 90.0 17.3 199 149-363 13-224 (584)
118 PRK08451 DNA polymerase III su 98.1 8.6E-05 1.9E-09 88.0 17.3 180 149-359 14-218 (535)
119 PRK14953 DNA polymerase III su 98.1 0.0001 2.2E-09 87.6 18.0 184 149-360 16-221 (486)
120 PRK14970 DNA polymerase III su 98.1 9.5E-05 2.1E-09 86.5 17.1 180 149-356 17-206 (367)
121 PF14516 AAA_35: AAA-like doma 98.0 0.00046 1E-08 78.6 22.0 203 147-366 9-246 (331)
122 PRK14954 DNA polymerase III su 98.0 0.00012 2.6E-09 89.0 17.8 202 149-359 16-229 (620)
123 PRK06305 DNA polymerase III su 98.0 8.2E-05 1.8E-09 88.0 16.0 182 149-359 17-223 (451)
124 PRK14087 dnaA chromosomal repl 98.0 9.1E-05 2E-09 87.6 16.1 171 176-363 141-323 (450)
125 TIGR01242 26Sp45 26S proteasom 98.0 2.9E-05 6.4E-10 90.3 11.8 181 147-353 120-328 (364)
126 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 61.7 3.3 39 548-586 2-40 (44)
127 PRK07764 DNA polymerase III su 98.0 9.6E-05 2.1E-09 92.9 16.4 192 149-356 15-218 (824)
128 PRK14948 DNA polymerase III su 98.0 0.00013 2.8E-09 89.3 17.2 197 149-359 16-222 (620)
129 KOG0531 Protein phosphatase 1, 98.0 1.1E-06 2.3E-11 104.4 -1.2 119 541-663 89-208 (414)
130 CHL00181 cbbX CbbX; Provisiona 98.0 0.00022 4.7E-09 79.0 16.8 159 150-327 24-210 (287)
131 PRK14971 DNA polymerase III su 98.0 0.00018 3.9E-09 88.2 17.4 176 149-356 17-219 (614)
132 PHA02544 44 clamp loader, smal 97.9 4.8E-05 1E-09 87.3 11.7 148 149-324 21-171 (316)
133 KOG2004 Mitochondrial ATP-depe 97.9 0.00013 2.8E-09 85.0 14.7 107 148-267 410-516 (906)
134 PRK06647 DNA polymerase III su 97.9 0.00026 5.5E-09 85.7 18.2 195 149-359 16-220 (563)
135 TIGR02881 spore_V_K stage V sp 97.9 0.00012 2.7E-09 80.7 14.0 159 150-327 7-192 (261)
136 KOG0531 Protein phosphatase 1, 97.9 1.3E-06 2.8E-11 103.8 -1.9 111 544-658 69-179 (414)
137 KOG2543 Origin recognition com 97.9 0.00032 6.8E-09 76.1 15.7 170 148-325 5-192 (438)
138 TIGR00767 rho transcription te 97.9 2.6E-05 5.6E-10 87.3 7.6 93 175-268 167-267 (415)
139 PRK06620 hypothetical protein; 97.9 0.00025 5.3E-09 74.9 14.3 138 177-359 45-189 (214)
140 PRK14965 DNA polymerase III su 97.9 0.00027 5.9E-09 86.5 16.6 196 149-360 16-222 (576)
141 TIGR02639 ClpA ATP-dependent C 97.8 9.7E-05 2.1E-09 93.8 12.9 155 149-326 182-358 (731)
142 PRK11331 5-methylcytosine-spec 97.8 0.00012 2.6E-09 83.6 11.7 120 149-280 175-297 (459)
143 PRK05563 DNA polymerase III su 97.8 0.00054 1.2E-08 83.4 18.0 193 149-357 16-218 (559)
144 TIGR00362 DnaA chromosomal rep 97.8 0.00036 7.9E-09 82.6 16.1 161 176-359 136-310 (405)
145 KOG1909 Ran GTPase-activating 97.8 5.1E-06 1.1E-10 88.4 0.3 76 529-604 36-131 (382)
146 TIGR03345 VI_ClpV1 type VI sec 97.8 6.7E-05 1.4E-09 95.7 10.2 179 149-352 187-389 (852)
147 PRK05707 DNA polymerase III su 97.8 0.00035 7.6E-09 78.7 14.8 97 255-359 105-203 (328)
148 PRK03992 proteasome-activating 97.8 0.00013 2.8E-09 85.0 11.6 179 147-352 129-336 (389)
149 TIGR02880 cbbX_cfxQ probable R 97.8 0.00046 9.9E-09 76.6 14.9 133 178-327 60-209 (284)
150 PF05673 DUF815: Protein of un 97.7 0.00077 1.7E-08 70.2 15.2 127 145-299 23-154 (249)
151 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.9E-10 57.8 3.4 40 570-610 1-40 (44)
152 PRK12422 chromosomal replicati 97.7 0.00081 1.8E-08 79.3 17.3 155 176-353 141-307 (445)
153 PRK14088 dnaA chromosomal repl 97.7 0.00054 1.2E-08 81.1 15.4 162 176-359 130-305 (440)
154 PRK07399 DNA polymerase III su 97.7 0.00067 1.5E-08 76.1 15.3 198 149-360 4-222 (314)
155 TIGR00763 lon ATP-dependent pr 97.7 0.00051 1.1E-08 87.8 16.0 52 148-199 319-370 (775)
156 PRK00149 dnaA chromosomal repl 97.7 0.00043 9.3E-09 83.0 14.3 161 175-358 147-321 (450)
157 PRK10787 DNA-binding ATP-depen 97.7 0.0012 2.6E-08 83.4 18.5 166 148-326 321-506 (784)
158 CHL00095 clpC Clp protease ATP 97.7 0.00028 6.1E-09 90.8 13.1 156 149-325 179-353 (821)
159 KOG1859 Leucine-rich repeat pr 97.6 2.4E-06 5.2E-11 98.6 -5.3 79 572-654 166-245 (1096)
160 COG0466 Lon ATP-dependent Lon 97.6 0.00066 1.4E-08 80.0 14.0 166 148-326 322-508 (782)
161 COG3267 ExeA Type II secretory 97.6 0.0024 5.2E-08 66.1 15.9 183 174-361 49-247 (269)
162 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00056 1.2E-08 88.4 14.3 156 149-326 173-349 (852)
163 KOG1947 Leucine rich repeat pr 97.6 1.2E-05 2.6E-10 99.3 -0.9 63 1055-1117 243-308 (482)
164 KOG4579 Leucine-rich repeat (L 97.6 7.4E-06 1.6E-10 74.7 -2.2 94 540-635 46-140 (177)
165 PRK11034 clpA ATP-dependent Cl 97.6 0.00045 9.7E-09 86.3 12.4 157 149-326 186-362 (758)
166 TIGR00602 rad24 checkpoint pro 97.6 0.00053 1.1E-08 83.3 12.5 200 148-353 83-317 (637)
167 PRK10536 hypothetical protein; 97.5 0.0012 2.7E-08 69.7 13.0 137 149-298 55-215 (262)
168 PRK08769 DNA polymerase III su 97.5 0.0023 5E-08 71.4 16.0 184 156-360 11-209 (319)
169 PTZ00361 26 proteosome regulat 97.5 0.00046 9.9E-09 80.3 10.6 157 149-326 183-367 (438)
170 KOG4579 Leucine-rich repeat (L 97.5 3.3E-05 7.2E-10 70.6 0.8 101 549-651 29-133 (177)
171 PF00004 AAA: ATPase family as 97.5 0.0002 4.4E-09 70.0 6.6 70 179-269 1-71 (132)
172 KOG1514 Origin recognition com 97.5 0.0016 3.4E-08 76.6 14.4 209 148-363 395-625 (767)
173 COG0542 clpA ATP-binding subun 97.5 0.0021 4.6E-08 78.4 16.0 122 148-283 490-620 (786)
174 PRK14086 dnaA chromosomal repl 97.5 0.0017 3.6E-08 77.8 14.9 160 177-359 315-488 (617)
175 PRK10865 protein disaggregatio 97.5 0.001 2.2E-08 85.5 14.0 45 149-199 178-222 (857)
176 KOG2982 Uncharacterized conser 97.5 5.2E-05 1.1E-09 78.6 1.9 84 545-628 69-157 (418)
177 KOG1859 Leucine-rich repeat pr 97.4 7E-06 1.5E-10 94.9 -5.4 111 540-654 180-292 (1096)
178 PRK06090 DNA polymerase III su 97.4 0.0038 8.2E-08 69.6 15.8 177 157-359 11-201 (319)
179 TIGR03689 pup_AAA proteasome A 97.4 0.002 4.4E-08 76.2 13.9 167 149-326 182-378 (512)
180 KOG0991 Replication factor C, 97.4 0.0021 4.5E-08 64.6 11.7 104 148-279 26-136 (333)
181 PRK08058 DNA polymerase III su 97.4 0.0026 5.7E-08 72.4 14.5 164 150-325 6-181 (329)
182 PRK06871 DNA polymerase III su 97.4 0.0049 1.1E-07 68.9 16.2 177 157-356 10-200 (325)
183 PTZ00454 26S protease regulato 97.4 0.0016 3.5E-08 75.4 12.8 180 148-353 144-351 (398)
184 COG0593 DnaA ATPase involved i 97.3 0.0019 4.2E-08 73.2 12.8 180 147-351 86-278 (408)
185 TIGR03346 chaperone_ClpB ATP-d 97.3 0.047 1E-06 70.9 27.3 138 149-295 565-717 (852)
186 KOG1947 Leucine rich repeat pr 97.3 3.1E-05 6.8E-10 95.6 -1.6 66 1031-1096 242-310 (482)
187 smart00382 AAA ATPases associa 97.3 0.00071 1.5E-08 67.4 8.6 88 177-269 3-91 (148)
188 PRK10865 protein disaggregatio 97.3 0.011 2.4E-07 76.1 21.2 139 148-295 567-720 (857)
189 CHL00176 ftsH cell division pr 97.3 0.0021 4.6E-08 78.9 14.0 177 149-351 183-386 (638)
190 COG2812 DnaX DNA polymerase II 97.3 0.00085 1.8E-08 78.5 9.8 190 149-354 16-215 (515)
191 PF13177 DNA_pol3_delta2: DNA 97.3 0.0019 4.1E-08 65.0 10.9 139 153-314 1-162 (162)
192 PRK08116 hypothetical protein; 97.3 0.00098 2.1E-08 73.1 9.6 104 177-296 115-221 (268)
193 TIGR02639 ClpA ATP-dependent C 97.2 0.0048 1E-07 78.7 16.4 121 148-281 453-578 (731)
194 KOG2982 Uncharacterized conser 97.2 0.0002 4.3E-09 74.5 3.1 189 920-1110 70-285 (418)
195 PRK07993 DNA polymerase III su 97.2 0.011 2.4E-07 66.9 16.5 179 157-357 10-202 (334)
196 COG5238 RNA1 Ran GTPase-activa 97.1 9.6E-05 2.1E-09 75.7 -0.2 87 542-628 25-131 (388)
197 PRK12608 transcription termina 97.1 0.0034 7.3E-08 70.4 10.9 105 157-267 119-231 (380)
198 PRK06964 DNA polymerase III su 97.1 0.0077 1.7E-07 67.9 13.9 94 255-360 131-226 (342)
199 CHL00095 clpC Clp protease ATP 97.1 0.029 6.2E-07 72.6 21.0 138 148-295 508-661 (821)
200 TIGR01241 FtsH_fam ATP-depende 97.1 0.0061 1.3E-07 74.2 14.1 186 148-359 54-267 (495)
201 COG1223 Predicted ATPase (AAA+ 97.0 0.0029 6.2E-08 64.8 9.1 179 148-352 120-318 (368)
202 KOG1644 U2-associated snRNP A' 97.0 0.00067 1.4E-08 67.0 4.3 101 548-651 43-150 (233)
203 PRK12727 flagellar biosynthesi 97.0 0.013 2.8E-07 68.6 15.4 89 175-266 349-438 (559)
204 COG1373 Predicted ATPase (AAA+ 97.0 0.0066 1.4E-07 70.8 13.3 225 178-464 39-269 (398)
205 COG1222 RPT1 ATP-dependent 26S 97.0 0.0054 1.2E-07 66.5 11.1 188 150-364 152-372 (406)
206 PF04665 Pox_A32: Poxvirus A32 97.0 0.0015 3.2E-08 68.9 6.7 35 178-214 15-49 (241)
207 TIGR02640 gas_vesic_GvpN gas v 97.0 0.013 2.9E-07 64.4 14.5 55 157-224 10-64 (262)
208 PF02562 PhoH: PhoH-like prote 96.9 0.0029 6.3E-08 65.2 8.1 131 152-298 3-158 (205)
209 PRK09361 radB DNA repair and r 96.9 0.0045 9.8E-08 66.8 9.7 88 174-265 21-116 (225)
210 KOG0741 AAA+-type ATPase [Post 96.9 0.025 5.5E-07 64.2 15.2 149 174-349 536-704 (744)
211 PRK08118 topology modulation p 96.8 0.00057 1.2E-08 69.2 2.3 34 178-211 3-37 (167)
212 COG0470 HolB ATPase involved i 96.8 0.0056 1.2E-07 70.8 10.9 143 150-313 2-168 (325)
213 KOG3665 ZYG-1-like serine/thre 96.8 0.00097 2.1E-08 82.6 4.6 81 570-652 122-206 (699)
214 PRK14722 flhF flagellar biosyn 96.8 0.072 1.6E-06 60.7 19.0 90 175-267 136-226 (374)
215 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.7E-08 73.4 4.8 51 150-200 52-102 (361)
216 TIGR03345 VI_ClpV1 type VI sec 96.8 0.003 6.6E-08 80.9 8.8 139 148-295 565-718 (852)
217 PF10443 RNA12: RNA12 protein; 96.8 0.03 6.6E-07 63.4 15.3 201 154-370 1-289 (431)
218 PRK13531 regulatory ATPase Rav 96.8 0.0053 1.2E-07 71.1 9.6 42 150-199 21-62 (498)
219 COG2607 Predicted ATPase (AAA+ 96.8 0.023 4.9E-07 58.1 12.7 124 144-295 55-182 (287)
220 KOG3665 ZYG-1-like serine/thre 96.7 0.0015 3.2E-08 81.0 5.3 107 515-628 146-261 (699)
221 PRK04132 replication factor C 96.7 0.02 4.3E-07 71.9 14.9 157 182-359 570-731 (846)
222 TIGR02902 spore_lonB ATP-depen 96.7 0.0064 1.4E-07 74.0 10.4 43 150-198 66-108 (531)
223 PRK08939 primosomal protein Dn 96.7 0.005 1.1E-07 68.8 8.6 122 153-295 135-260 (306)
224 TIGR02237 recomb_radB DNA repa 96.7 0.0052 1.1E-07 65.5 8.5 48 174-224 10-57 (209)
225 PRK07952 DNA replication prote 96.7 0.0056 1.2E-07 65.6 8.6 103 176-295 99-204 (244)
226 PRK12377 putative replication 96.7 0.0047 1E-07 66.3 8.0 102 176-295 101-205 (248)
227 PRK08181 transposase; Validate 96.7 0.0027 5.8E-08 69.2 6.1 101 177-296 107-209 (269)
228 PRK06526 transposase; Provisio 96.7 0.0025 5.4E-08 69.1 5.8 101 176-296 98-201 (254)
229 PRK08699 DNA polymerase III su 96.7 0.011 2.5E-07 66.6 11.2 71 255-325 112-184 (325)
230 PF00158 Sigma54_activat: Sigm 96.6 0.0041 8.9E-08 62.7 6.6 131 151-295 1-143 (168)
231 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0067 1.5E-07 66.1 8.7 92 174-266 17-125 (235)
232 PRK09183 transposase/IS protei 96.6 0.0039 8.5E-08 68.1 6.7 23 177-199 103-125 (259)
233 PRK04296 thymidine kinase; Pro 96.6 0.0037 8E-08 65.0 6.2 115 177-298 3-118 (190)
234 PRK05703 flhF flagellar biosyn 96.6 0.049 1.1E-06 64.0 15.9 87 176-265 221-308 (424)
235 PF07693 KAP_NTPase: KAP famil 96.5 0.055 1.2E-06 62.5 16.3 44 154-200 1-44 (325)
236 PF00910 RNA_helicase: RNA hel 96.5 0.0032 6.8E-08 58.4 4.7 21 179-199 1-21 (107)
237 PTZ00494 tuzin-like protein; P 96.5 0.16 3.6E-06 57.0 18.2 170 144-326 366-544 (664)
238 KOG2035 Replication factor C, 96.5 0.0084 1.8E-07 62.3 7.9 208 151-381 15-260 (351)
239 PF00448 SRP54: SRP54-type pro 96.5 0.0077 1.7E-07 62.6 7.7 88 176-265 1-92 (196)
240 CHL00195 ycf46 Ycf46; Provisio 96.5 0.014 3E-07 69.4 10.7 180 149-352 228-428 (489)
241 PF01695 IstB_IS21: IstB-like 96.4 0.0021 4.5E-08 65.7 3.1 100 176-295 47-149 (178)
242 PRK06921 hypothetical protein; 96.4 0.0083 1.8E-07 65.7 7.9 37 176-214 117-154 (266)
243 KOG0728 26S proteasome regulat 96.4 0.075 1.6E-06 54.2 13.4 154 151-326 148-331 (404)
244 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.012 2.6E-07 57.9 7.8 118 177-297 3-139 (159)
245 KOG1969 DNA replication checkp 96.3 0.0065 1.4E-07 71.8 6.8 107 150-275 272-406 (877)
246 PF14532 Sigma54_activ_2: Sigm 96.3 0.003 6.6E-08 61.9 3.6 107 152-295 1-109 (138)
247 COG0542 clpA ATP-binding subun 96.3 0.01 2.2E-07 72.6 8.6 153 150-326 171-346 (786)
248 cd01394 radB RadB. The archaea 96.3 0.012 2.7E-07 63.1 8.4 44 174-219 17-60 (218)
249 TIGR01243 CDC48 AAA family ATP 96.3 0.046 1E-06 70.1 14.9 179 149-353 453-657 (733)
250 PRK06835 DNA replication prote 96.3 0.0035 7.5E-08 70.5 4.2 102 177-295 184-288 (329)
251 PRK05541 adenylylsulfate kinas 96.3 0.009 2E-07 61.6 7.0 38 174-213 5-42 (176)
252 cd01393 recA_like RecA is a b 96.3 0.025 5.5E-07 61.2 10.6 90 174-266 17-124 (226)
253 TIGR02012 tigrfam_recA protein 96.2 0.01 2.2E-07 66.0 7.2 86 174-266 53-143 (321)
254 TIGR01243 CDC48 AAA family ATP 96.2 0.02 4.4E-07 73.3 11.0 181 148-354 177-382 (733)
255 TIGR03499 FlhF flagellar biosy 96.2 0.014 3.1E-07 64.8 8.3 87 175-265 193-281 (282)
256 cd01133 F1-ATPase_beta F1 ATP 96.2 0.012 2.7E-07 63.4 7.5 90 175-266 68-173 (274)
257 PRK11034 clpA ATP-dependent Cl 96.2 0.0071 1.5E-07 75.9 6.5 121 149-281 458-582 (758)
258 KOG0744 AAA+-type ATPase [Post 96.2 0.013 2.9E-07 62.2 7.3 81 176-267 177-261 (423)
259 PF07728 AAA_5: AAA domain (dy 96.1 0.002 4.3E-08 63.5 1.2 87 179-279 2-88 (139)
260 PRK07261 topology modulation p 96.1 0.0084 1.8E-07 61.1 5.7 66 178-267 2-68 (171)
261 cd00983 recA RecA is a bacter 96.1 0.011 2.4E-07 65.7 7.1 86 174-266 53-143 (325)
262 PRK15455 PrkA family serine pr 96.1 0.0042 9.2E-08 72.7 3.8 49 150-198 77-125 (644)
263 PF08423 Rad51: Rad51; InterP 96.1 0.014 3E-07 63.7 7.5 90 175-265 37-142 (256)
264 KOG0731 AAA+-type ATPase conta 96.1 0.065 1.4E-06 65.4 13.5 181 149-355 311-520 (774)
265 KOG2739 Leucine-rich acidic nu 96.1 0.0025 5.3E-08 66.3 1.4 104 544-650 40-152 (260)
266 PF13207 AAA_17: AAA domain; P 96.0 0.004 8.6E-08 59.6 2.7 21 178-198 1-21 (121)
267 KOG0733 Nuclear AAA ATPase (VC 96.0 0.084 1.8E-06 61.4 13.3 98 149-267 190-293 (802)
268 PRK09354 recA recombinase A; P 96.0 0.015 3.2E-07 65.3 7.3 86 174-266 58-148 (349)
269 PLN00020 ribulose bisphosphate 96.0 0.01 2.2E-07 65.6 5.9 27 173-199 145-171 (413)
270 KOG2228 Origin recognition com 96.0 0.062 1.3E-06 58.0 11.2 172 150-326 25-219 (408)
271 PRK11889 flhF flagellar biosyn 96.0 0.038 8.2E-07 62.2 10.2 91 174-267 239-331 (436)
272 PRK06696 uridine kinase; Valid 96.0 0.0084 1.8E-07 64.4 5.1 43 153-198 2-44 (223)
273 COG1875 NYN ribonuclease and A 95.9 0.024 5.1E-07 61.7 7.9 138 151-298 226-390 (436)
274 COG2884 FtsE Predicted ATPase 95.9 0.035 7.6E-07 54.8 8.3 126 175-303 27-204 (223)
275 KOG0733 Nuclear AAA ATPase (VC 95.9 0.086 1.9E-06 61.3 12.7 132 175-327 544-693 (802)
276 KOG0734 AAA+-type ATPase conta 95.9 0.018 3.9E-07 65.4 7.1 52 150-201 305-362 (752)
277 COG0468 RecA RecA/RadA recombi 95.9 0.035 7.7E-07 60.2 9.2 92 172-265 56-150 (279)
278 PRK07132 DNA polymerase III su 95.8 0.26 5.7E-06 54.7 16.1 158 175-359 17-185 (299)
279 PF00560 LRR_1: Leucine Rich R 95.8 0.0041 9E-08 38.2 1.1 18 572-589 2-19 (22)
280 PRK00771 signal recognition pa 95.8 0.045 9.8E-07 64.0 10.5 89 174-265 93-184 (437)
281 COG5238 RNA1 Ran GTPase-activa 95.8 0.0085 1.8E-07 61.9 3.7 74 530-603 37-130 (388)
282 TIGR02974 phageshock_pspF psp 95.7 0.034 7.4E-07 63.2 8.9 44 151-198 1-44 (329)
283 PF13604 AAA_30: AAA domain; P 95.7 0.013 2.9E-07 61.2 5.1 108 177-297 19-132 (196)
284 TIGR02238 recomb_DMC1 meiotic 95.7 0.03 6.6E-07 62.8 8.2 59 174-233 94-156 (313)
285 TIGR01650 PD_CobS cobaltochela 95.7 0.15 3.3E-06 56.6 13.4 62 149-223 45-106 (327)
286 PF03215 Rad17: Rad17 cell cyc 95.7 0.049 1.1E-06 65.3 10.4 60 149-213 19-78 (519)
287 PLN03187 meiotic recombination 95.7 0.026 5.6E-07 63.7 7.4 60 174-234 124-187 (344)
288 KOG1644 U2-associated snRNP A' 95.7 0.011 2.5E-07 58.6 4.0 88 540-628 57-151 (233)
289 TIGR01817 nifA Nif-specific re 95.6 0.068 1.5E-06 66.0 11.8 135 147-295 194-340 (534)
290 cd01120 RecA-like_NTPases RecA 95.6 0.043 9.3E-07 55.9 8.5 40 178-219 1-40 (165)
291 KOG2123 Uncharacterized conser 95.6 0.00083 1.8E-08 69.4 -4.1 101 1005-1111 18-124 (388)
292 PRK11608 pspF phage shock prot 95.6 0.023 4.9E-07 64.8 6.8 133 150-295 7-150 (326)
293 COG0572 Udk Uridine kinase [Nu 95.6 0.027 5.8E-07 58.0 6.5 79 174-257 6-85 (218)
294 COG1618 Predicted nucleotide k 95.6 0.0095 2.1E-07 56.9 3.0 25 177-201 6-30 (179)
295 KOG0730 AAA+-type ATPase [Post 95.6 0.23 4.9E-06 58.9 14.6 97 150-267 435-538 (693)
296 PRK12723 flagellar biosynthesi 95.5 0.083 1.8E-06 60.8 11.1 91 174-267 172-265 (388)
297 KOG2123 Uncharacterized conser 95.5 0.0024 5.1E-08 66.1 -1.2 80 543-623 37-123 (388)
298 KOG0735 AAA+-type ATPase [Post 95.5 0.034 7.4E-07 65.6 7.9 75 174-267 429-505 (952)
299 cd01131 PilT Pilus retraction 95.5 0.013 2.8E-07 61.4 4.3 109 177-298 2-111 (198)
300 COG1484 DnaC DNA replication p 95.5 0.029 6.3E-07 61.0 7.0 82 175-274 104-185 (254)
301 PRK08233 hypothetical protein; 95.5 0.035 7.5E-07 57.7 7.5 24 176-199 3-26 (182)
302 PRK04301 radA DNA repair and r 95.5 0.037 8.1E-07 63.0 8.2 58 174-232 100-161 (317)
303 PRK13695 putative NTPase; Prov 95.5 0.016 3.4E-07 59.6 4.7 22 178-199 2-23 (174)
304 TIGR00064 ftsY signal recognit 95.5 0.063 1.4E-06 59.1 9.6 91 174-266 70-164 (272)
305 PRK06067 flagellar accessory p 95.5 0.048 1E-06 59.2 8.7 88 174-266 23-130 (234)
306 TIGR00959 ffh signal recogniti 95.5 0.039 8.5E-07 64.4 8.3 91 175-266 98-192 (428)
307 KOG0729 26S proteasome regulat 95.5 0.047 1E-06 56.2 7.7 97 148-266 176-280 (435)
308 TIGR02239 recomb_RAD51 DNA rep 95.5 0.051 1.1E-06 61.2 9.0 59 174-233 94-156 (316)
309 PRK14974 cell division protein 95.5 0.075 1.6E-06 59.9 10.2 92 175-268 139-234 (336)
310 cd03247 ABCC_cytochrome_bd The 95.4 0.044 9.6E-07 56.5 7.7 24 176-199 28-51 (178)
311 TIGR02236 recomb_radA DNA repa 95.4 0.047 1E-06 62.1 8.6 58 174-232 93-154 (310)
312 PRK10867 signal recognition pa 95.4 0.042 9E-07 64.1 8.1 24 175-198 99-122 (433)
313 PRK12724 flagellar biosynthesi 95.4 0.04 8.7E-07 63.0 7.7 25 175-199 222-246 (432)
314 PF07724 AAA_2: AAA domain (Cd 95.4 0.0092 2E-07 60.4 2.4 42 176-219 3-45 (171)
315 PRK15429 formate hydrogenlyase 95.4 0.039 8.4E-07 70.3 8.5 135 149-296 376-521 (686)
316 cd03214 ABC_Iron-Siderophores_ 95.3 0.11 2.3E-06 53.8 10.3 123 175-300 24-162 (180)
317 COG4618 ArpD ABC-type protease 95.3 2.6 5.5E-05 48.9 21.3 22 176-197 362-383 (580)
318 PF00560 LRR_1: Leucine Rich R 95.3 0.0098 2.1E-07 36.5 1.4 22 548-569 1-22 (22)
319 PLN03186 DNA repair protein RA 95.3 0.075 1.6E-06 60.2 9.5 59 174-233 121-183 (342)
320 cd03115 SRP The signal recogni 95.3 0.066 1.4E-06 55.0 8.4 88 178-267 2-93 (173)
321 cd03238 ABC_UvrA The excision 95.2 0.083 1.8E-06 53.8 8.7 116 175-300 20-153 (176)
322 PF00006 ATP-synt_ab: ATP synt 95.2 0.053 1.2E-06 56.9 7.5 86 176-265 15-114 (215)
323 PRK12726 flagellar biosynthesi 95.2 0.081 1.8E-06 59.5 9.2 91 174-267 204-296 (407)
324 TIGR00708 cobA cob(I)alamin ad 95.2 0.11 2.4E-06 51.9 9.0 118 177-296 6-140 (173)
325 PF01583 APS_kinase: Adenylyls 95.1 0.026 5.7E-07 55.3 4.6 36 176-213 2-37 (156)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.11 2.4E-06 51.2 9.2 106 176-301 26-132 (144)
327 PRK05439 pantothenate kinase; 95.1 0.1 2.3E-06 57.8 9.7 82 173-257 83-166 (311)
328 COG2842 Uncharacterized ATPase 95.1 0.3 6.5E-06 52.5 12.6 119 148-280 71-189 (297)
329 cd03228 ABCC_MRP_Like The MRP 95.1 0.094 2E-06 53.6 8.9 24 175-198 27-50 (171)
330 PHA02244 ATPase-like protein 95.1 0.073 1.6E-06 59.7 8.3 21 178-198 121-141 (383)
331 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.1 2.2E-06 56.6 9.4 49 174-226 19-67 (237)
332 PRK10733 hflB ATP-dependent me 95.0 0.11 2.3E-06 65.1 10.8 158 149-327 152-336 (644)
333 PRK07667 uridine kinase; Provi 95.0 0.044 9.6E-07 57.2 6.4 37 158-198 3-39 (193)
334 COG0563 Adk Adenylate kinase a 95.0 0.032 7E-07 56.7 5.1 22 178-199 2-23 (178)
335 cd01122 GP4d_helicase GP4d_hel 95.0 0.16 3.4E-06 56.8 11.1 54 175-231 29-82 (271)
336 PRK05022 anaerobic nitric oxid 95.0 0.047 1E-06 66.6 7.4 135 148-295 186-331 (509)
337 KOG1051 Chaperone HSP104 and r 95.0 0.1 2.2E-06 65.2 10.1 118 149-279 562-683 (898)
338 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.029 6.3E-07 59.4 4.7 23 176-198 29-51 (213)
339 PRK05800 cobU adenosylcobinami 94.9 0.026 5.6E-07 57.1 4.1 81 178-265 3-85 (170)
340 COG4608 AppF ABC-type oligopep 94.9 0.077 1.7E-06 56.3 7.7 127 175-304 38-178 (268)
341 cd03216 ABC_Carb_Monos_I This 94.9 0.074 1.6E-06 53.8 7.3 117 176-300 26-146 (163)
342 PRK09270 nucleoside triphospha 94.9 0.12 2.6E-06 55.8 9.3 26 173-198 30-55 (229)
343 cd01125 repA Hexameric Replica 94.8 0.11 2.4E-06 56.5 9.1 21 178-198 3-23 (239)
344 PF08433 KTI12: Chromatin asso 94.8 0.036 7.7E-07 60.6 5.2 23 177-199 2-24 (270)
345 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.035 7.7E-07 61.4 5.1 51 148-198 60-110 (358)
346 TIGR00554 panK_bact pantothena 94.8 0.13 2.8E-06 56.7 9.5 80 174-256 60-141 (290)
347 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.079 1.7E-06 56.3 7.4 123 176-300 30-203 (254)
348 PTZ00035 Rad51 protein; Provis 94.8 0.17 3.6E-06 57.6 10.5 59 174-233 116-178 (337)
349 cd03223 ABCD_peroxisomal_ALDP 94.8 0.19 4.2E-06 51.0 10.0 25 175-199 26-50 (166)
350 cd03222 ABC_RNaseL_inhibitor T 94.8 0.13 2.8E-06 52.5 8.6 23 176-198 25-47 (177)
351 KOG0727 26S proteasome regulat 94.7 0.77 1.7E-05 47.3 13.7 51 149-199 155-212 (408)
352 cd01121 Sms Sms (bacterial rad 94.7 0.13 2.8E-06 59.3 9.4 84 175-266 81-168 (372)
353 COG0464 SpoVK ATPases of the A 94.7 0.24 5.1E-06 60.7 12.5 133 174-327 274-424 (494)
354 PF00485 PRK: Phosphoribulokin 94.7 0.11 2.3E-06 54.5 8.2 80 178-259 1-86 (194)
355 PRK05986 cob(I)alamin adenolsy 94.7 0.1 2.2E-06 53.0 7.5 119 176-296 22-158 (191)
356 PTZ00301 uridine kinase; Provi 94.7 0.052 1.1E-06 57.0 5.8 23 176-198 3-25 (210)
357 PRK06547 hypothetical protein; 94.7 0.041 8.8E-07 55.8 4.7 27 173-199 12-38 (172)
358 PF10236 DAP3: Mitochondrial r 94.6 0.2 4.3E-06 56.5 10.6 49 307-356 258-306 (309)
359 TIGR00390 hslU ATP-dependent p 94.6 0.079 1.7E-06 60.4 7.2 51 149-199 12-70 (441)
360 cd02019 NK Nucleoside/nucleoti 94.6 0.024 5.2E-07 47.5 2.4 22 178-199 1-22 (69)
361 KOG2739 Leucine-rich acidic nu 94.6 0.02 4.3E-07 59.7 2.3 82 981-1065 41-126 (260)
362 cd01135 V_A-ATPase_B V/A-type 94.6 0.11 2.3E-06 56.2 7.8 93 175-267 68-177 (276)
363 COG1102 Cmk Cytidylate kinase 94.5 0.05 1.1E-06 52.2 4.6 44 178-234 2-45 (179)
364 KOG0473 Leucine-rich repeat pr 94.5 0.0026 5.6E-08 64.0 -4.1 85 543-628 38-122 (326)
365 COG1428 Deoxynucleoside kinase 94.5 0.024 5.2E-07 57.3 2.5 25 176-200 4-28 (216)
366 cd02025 PanK Pantothenate kina 94.4 0.11 2.5E-06 55.2 7.8 21 178-198 1-21 (220)
367 PF12775 AAA_7: P-loop contain 94.4 0.052 1.1E-06 59.7 5.3 94 159-272 23-116 (272)
368 PRK10820 DNA-binding transcrip 94.4 0.082 1.8E-06 64.5 7.4 134 149-296 204-349 (520)
369 PF13238 AAA_18: AAA domain; P 94.3 0.026 5.6E-07 54.7 2.5 21 179-199 1-21 (129)
370 cd03246 ABCC_Protease_Secretio 94.3 0.13 2.9E-06 52.7 7.8 23 176-198 28-50 (173)
371 COG1066 Sms Predicted ATP-depe 94.3 0.19 4.1E-06 56.2 9.1 84 175-267 92-179 (456)
372 PRK13948 shikimate kinase; Pro 94.3 0.28 6.1E-06 50.2 9.9 25 174-198 8-32 (182)
373 PTZ00088 adenylate kinase 1; P 94.3 0.05 1.1E-06 58.0 4.6 21 178-198 8-28 (229)
374 TIGR02858 spore_III_AA stage I 94.3 0.19 4.1E-06 55.0 9.1 128 157-299 97-232 (270)
375 PHA00729 NTP-binding motif con 94.2 0.053 1.1E-06 56.7 4.5 25 175-199 16-40 (226)
376 PRK08006 replicative DNA helic 94.2 1 2.2E-05 54.0 15.7 73 152-232 205-277 (471)
377 PF00154 RecA: recA bacterial 94.2 0.09 1.9E-06 58.4 6.4 87 174-267 51-142 (322)
378 PRK14723 flhF flagellar biosyn 94.2 0.25 5.5E-06 61.3 10.9 89 175-266 184-273 (767)
379 KOG0736 Peroxisome assembly fa 94.2 0.44 9.5E-06 57.4 12.2 98 149-267 672-775 (953)
380 cd03282 ABC_MSH4_euk MutS4 hom 94.2 0.054 1.2E-06 56.8 4.5 121 176-303 29-158 (204)
381 cd03230 ABC_DR_subfamily_A Thi 94.2 0.25 5.4E-06 50.6 9.4 121 175-301 25-160 (173)
382 TIGR00235 udk uridine kinase. 94.2 0.042 9.1E-07 58.3 3.7 25 174-198 4-28 (207)
383 TIGR00382 clpX endopeptidase C 94.2 0.19 4.2E-06 58.2 9.3 51 148-198 76-138 (413)
384 PRK05201 hslU ATP-dependent pr 94.1 0.11 2.3E-06 59.4 7.0 52 148-199 14-73 (443)
385 PF07726 AAA_3: ATPase family 94.1 0.024 5.2E-07 52.8 1.6 27 179-207 2-28 (131)
386 PRK05480 uridine/cytidine kina 94.1 0.043 9.3E-07 58.4 3.8 25 174-198 4-28 (209)
387 COG1136 SalX ABC-type antimicr 94.1 0.36 7.8E-06 50.6 10.3 60 244-303 148-210 (226)
388 PRK00889 adenylylsulfate kinas 94.1 0.14 3E-06 52.7 7.4 25 175-199 3-27 (175)
389 TIGR01425 SRP54_euk signal rec 94.1 0.16 3.5E-06 58.9 8.5 26 174-199 98-123 (429)
390 PRK04328 hypothetical protein; 94.1 0.13 2.8E-06 56.2 7.4 42 174-217 21-62 (249)
391 PRK14721 flhF flagellar biosyn 94.1 0.2 4.4E-06 58.1 9.3 88 175-265 190-278 (420)
392 PRK06995 flhF flagellar biosyn 94.1 0.23 5.1E-06 58.6 9.8 89 175-266 255-344 (484)
393 COG4088 Predicted nucleotide k 94.1 0.094 2E-06 52.3 5.5 22 177-198 2-23 (261)
394 cd02027 APSK Adenosine 5'-phos 94.0 0.14 3E-06 50.8 6.9 21 178-198 1-21 (149)
395 cd03229 ABC_Class3 This class 94.0 0.15 3.2E-06 52.6 7.4 24 175-198 25-48 (178)
396 cd02028 UMPK_like Uridine mono 94.0 0.093 2E-06 53.9 5.8 22 178-199 1-22 (179)
397 PRK06762 hypothetical protein; 94.0 0.041 9E-07 56.1 3.2 23 176-198 2-24 (166)
398 TIGR00150 HI0065_YjeE ATPase, 94.0 0.077 1.7E-06 50.6 4.7 41 156-200 6-46 (133)
399 KOG1532 GTPase XAB1, interacts 93.9 0.19 4.1E-06 52.5 7.6 61 173-235 16-87 (366)
400 PRK07276 DNA polymerase III su 93.9 1.1 2.4E-05 49.4 14.0 70 254-324 102-173 (290)
401 PRK08972 fliI flagellum-specif 93.9 0.2 4.4E-06 57.9 8.7 89 175-267 161-263 (444)
402 PF13671 AAA_33: AAA domain; P 93.9 0.043 9.3E-07 54.3 3.0 21 178-198 1-21 (143)
403 PF13481 AAA_25: AAA domain; P 93.9 0.031 6.8E-07 58.7 2.1 41 177-217 33-81 (193)
404 PRK12597 F0F1 ATP synthase sub 93.8 0.14 3.1E-06 60.0 7.5 92 175-267 142-248 (461)
405 COG4240 Predicted kinase [Gene 93.8 0.2 4.3E-06 50.8 7.3 84 174-258 48-135 (300)
406 PRK05973 replicative DNA helic 93.8 0.26 5.5E-06 52.5 8.7 48 175-226 63-110 (237)
407 cd03215 ABC_Carb_Monos_II This 93.8 0.16 3.6E-06 52.5 7.2 24 176-199 26-49 (182)
408 KOG2170 ATPase of the AAA+ sup 93.8 0.18 3.8E-06 53.8 7.2 115 150-281 83-203 (344)
409 TIGR03881 KaiC_arch_4 KaiC dom 93.7 0.21 4.6E-06 54.1 8.3 42 174-217 18-59 (229)
410 PRK10923 glnG nitrogen regulat 93.7 0.4 8.7E-06 58.5 11.7 46 150-199 139-184 (469)
411 PF03308 ArgK: ArgK protein; 93.7 0.086 1.9E-06 55.6 4.8 41 157-201 14-54 (266)
412 TIGR03575 selen_PSTK_euk L-ser 93.7 0.14 3.1E-06 57.5 7.0 21 179-199 2-22 (340)
413 COG1703 ArgK Putative periplas 93.7 0.08 1.7E-06 56.5 4.6 61 159-223 38-98 (323)
414 KOG0473 Leucine-rich repeat pr 93.7 0.0046 1E-07 62.3 -4.2 92 559-652 30-122 (326)
415 PRK09280 F0F1 ATP synthase sub 93.7 0.21 4.5E-06 58.4 8.3 91 175-266 143-248 (463)
416 PRK15453 phosphoribulokinase; 93.6 0.33 7.1E-06 52.5 9.2 79 175-255 4-89 (290)
417 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.26 5.7E-06 54.1 8.8 41 174-216 34-74 (259)
418 cd02024 NRK1 Nicotinamide ribo 93.6 0.11 2.3E-06 53.4 5.3 22 178-199 1-22 (187)
419 PF05659 RPW8: Arabidopsis bro 93.6 1.3 2.9E-05 43.1 12.4 82 3-86 5-87 (147)
420 PRK08840 replicative DNA helic 93.6 1.6 3.4E-05 52.2 15.9 75 151-233 197-271 (464)
421 TIGR01069 mutS2 MutS2 family p 93.6 0.055 1.2E-06 68.6 3.9 24 175-198 321-344 (771)
422 PRK08533 flagellar accessory p 93.6 0.28 6E-06 52.7 8.7 49 175-227 23-71 (230)
423 PRK09519 recA DNA recombinatio 93.5 0.19 4.2E-06 62.5 8.3 86 174-266 58-148 (790)
424 KOG0927 Predicted transporter 93.5 0.43 9.2E-06 55.3 10.2 119 176-296 416-566 (614)
425 KOG0652 26S proteasome regulat 93.5 2.1 4.5E-05 44.5 14.0 56 149-206 171-233 (424)
426 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.17 3.6E-06 51.0 6.5 116 177-301 26-145 (157)
427 PRK06904 replicative DNA helic 93.5 4.7 0.0001 48.4 19.6 75 151-233 201-275 (472)
428 PRK08149 ATP synthase SpaL; Va 93.4 0.23 5.1E-06 57.6 8.3 89 175-267 150-252 (428)
429 PRK05342 clpX ATP-dependent pr 93.4 0.14 3E-06 59.8 6.5 50 149-198 71-130 (412)
430 COG1419 FlhF Flagellar GTP-bin 93.4 0.21 4.6E-06 56.4 7.6 88 175-265 202-290 (407)
431 PRK05917 DNA polymerase III su 93.4 0.65 1.4E-05 51.0 11.2 141 158-313 6-154 (290)
432 COG0465 HflB ATP-dependent Zn 93.4 0.75 1.6E-05 55.4 12.5 101 146-267 147-253 (596)
433 PRK03839 putative kinase; Prov 93.4 0.054 1.2E-06 56.0 2.9 22 178-199 2-23 (180)
434 PRK10416 signal recognition pa 93.4 0.39 8.4E-06 54.1 9.8 25 175-199 113-137 (318)
435 TIGR00416 sms DNA repair prote 93.4 0.35 7.6E-06 57.5 9.9 97 157-265 79-179 (454)
436 cd03283 ABC_MutS-like MutS-lik 93.4 0.072 1.6E-06 55.7 3.8 22 177-198 26-47 (199)
437 PRK04040 adenylate kinase; Pro 93.4 0.059 1.3E-06 55.7 3.0 22 177-198 3-24 (188)
438 PRK06002 fliI flagellum-specif 93.3 0.2 4.4E-06 58.2 7.5 90 175-267 164-265 (450)
439 COG0529 CysC Adenylylsulfate k 93.3 0.19 4.2E-06 49.1 6.0 27 173-199 20-46 (197)
440 PF06309 Torsin: Torsin; Inte 93.3 0.14 2.9E-06 47.8 4.8 50 150-199 26-76 (127)
441 PRK08927 fliI flagellum-specif 93.3 0.32 6.9E-06 56.6 9.0 89 175-267 157-259 (442)
442 PRK00625 shikimate kinase; Pro 93.2 0.058 1.3E-06 54.7 2.7 21 178-198 2-22 (173)
443 PRK11823 DNA repair protein Ra 93.2 0.41 9E-06 56.9 10.2 83 175-265 79-165 (446)
444 cd01134 V_A-ATPase_A V/A-type 93.2 0.48 1E-05 52.8 9.8 50 175-228 156-206 (369)
445 COG0003 ArsA Predicted ATPase 93.2 0.13 2.8E-06 57.4 5.5 49 176-226 2-50 (322)
446 COG1936 Predicted nucleotide k 93.2 0.069 1.5E-06 52.2 2.9 20 178-197 2-21 (180)
447 TIGR03600 phage_DnaB phage rep 93.2 2.2 4.7E-05 51.1 16.4 73 152-232 175-247 (421)
448 PF13504 LRR_7: Leucine rich r 93.1 0.048 1E-06 30.9 1.1 14 572-585 3-16 (17)
449 TIGR01360 aden_kin_iso1 adenyl 93.1 0.071 1.5E-06 55.7 3.3 24 175-198 2-25 (188)
450 PRK11388 DNA-binding transcrip 93.1 0.24 5.2E-06 62.8 8.6 131 149-295 325-466 (638)
451 PF06745 KaiC: KaiC; InterPro 93.1 0.097 2.1E-06 56.5 4.4 88 174-265 17-124 (226)
452 PRK06793 fliI flagellum-specif 93.1 0.6 1.3E-05 54.4 10.9 89 175-267 155-257 (432)
453 PTZ00185 ATPase alpha subunit; 93.1 0.38 8.3E-06 56.1 9.1 93 175-267 188-300 (574)
454 COG3640 CooC CO dehydrogenase 93.1 0.13 2.8E-06 52.9 4.7 43 178-221 2-44 (255)
455 PRK06936 type III secretion sy 93.0 0.36 7.9E-06 56.1 9.0 89 175-267 161-263 (439)
456 CHL00206 ycf2 Ycf2; Provisiona 93.0 0.55 1.2E-05 63.0 11.5 25 175-199 1629-1653(2281)
457 PRK12678 transcription termina 93.0 0.16 3.4E-06 59.8 6.0 101 160-266 405-513 (672)
458 TIGR03305 alt_F1F0_F1_bet alte 93.0 0.22 4.9E-06 57.9 7.3 92 175-267 137-243 (449)
459 PF03969 AFG1_ATPase: AFG1-lik 93.0 0.1 2.2E-06 59.7 4.6 109 174-298 60-169 (362)
460 COG0396 sufC Cysteine desulfur 93.0 0.82 1.8E-05 47.1 10.3 26 175-200 29-54 (251)
461 PRK10463 hydrogenase nickel in 93.0 0.35 7.7E-06 52.8 8.3 26 174-199 102-127 (290)
462 PRK13543 cytochrome c biogenes 92.9 0.68 1.5E-05 49.4 10.6 25 175-199 36-60 (214)
463 COG0467 RAD55 RecA-superfamily 92.9 0.12 2.5E-06 57.2 4.8 42 174-217 21-62 (260)
464 cd03217 ABC_FeS_Assembly ABC-t 92.9 0.32 7E-06 51.2 7.9 25 175-199 25-49 (200)
465 cd03244 ABCC_MRP_domain2 Domai 92.9 0.55 1.2E-05 50.5 9.9 23 176-198 30-52 (221)
466 COG1224 TIP49 DNA helicase TIP 92.9 0.31 6.6E-06 53.2 7.4 55 148-206 38-95 (450)
467 PRK09544 znuC high-affinity zi 92.8 0.45 9.8E-06 52.1 9.1 25 175-199 29-53 (251)
468 PF13245 AAA_19: Part of AAA d 92.8 0.14 3.1E-06 43.6 4.0 23 176-198 10-32 (76)
469 KOG0738 AAA+-type ATPase [Post 92.8 0.15 3.2E-06 56.2 5.0 22 177-198 246-267 (491)
470 cd03243 ABC_MutS_homologs The 92.8 0.11 2.3E-06 55.0 4.0 22 177-198 30-51 (202)
471 KOG0739 AAA+-type ATPase [Post 92.7 0.22 4.7E-06 52.6 6.0 97 149-267 133-236 (439)
472 TIGR02322 phosphon_PhnN phosph 92.7 0.086 1.9E-06 54.5 3.2 23 177-199 2-24 (179)
473 PRK07594 type III secretion sy 92.7 0.32 7E-06 56.6 8.0 89 175-267 154-256 (433)
474 COG0714 MoxR-like ATPases [Gen 92.7 0.19 4.2E-06 57.7 6.3 63 150-225 25-87 (329)
475 PF03193 DUF258: Protein of un 92.7 0.16 3.5E-06 50.1 4.8 35 156-199 24-58 (161)
476 TIGR02655 circ_KaiC circadian 92.7 0.43 9.3E-06 57.8 9.5 61 158-226 249-309 (484)
477 TIGR03522 GldA_ABC_ATP gliding 92.7 0.52 1.1E-05 53.3 9.6 24 175-198 27-50 (301)
478 TIGR01040 V-ATPase_V1_B V-type 92.7 0.22 4.8E-06 57.6 6.6 93 175-267 140-258 (466)
479 cd03287 ABC_MSH3_euk MutS3 hom 92.7 0.47 1E-05 50.4 8.6 118 175-301 30-159 (222)
480 PRK13765 ATP-dependent proteas 92.6 0.18 3.9E-06 62.0 6.2 76 148-233 30-105 (637)
481 COG2019 AdkA Archaeal adenylat 92.6 0.1 2.2E-06 50.4 3.1 47 176-234 4-50 (189)
482 cd00227 CPT Chloramphenicol (C 92.6 0.085 1.8E-06 54.2 3.0 23 177-199 3-25 (175)
483 PRK10751 molybdopterin-guanine 92.6 0.12 2.6E-06 51.9 3.9 25 175-199 5-29 (173)
484 PF10923 DUF2791: P-loop Domai 92.6 0.58 1.2E-05 54.1 9.8 96 150-250 26-128 (416)
485 PRK00131 aroK shikimate kinase 92.6 0.085 1.8E-06 54.4 3.0 23 176-198 4-26 (175)
486 TIGR02329 propionate_PrpR prop 92.6 0.23 4.9E-06 60.1 6.9 47 149-199 212-258 (526)
487 TIGR01359 UMP_CMP_kin_fam UMP- 92.6 0.073 1.6E-06 55.3 2.4 21 178-198 1-21 (183)
488 COG0488 Uup ATPase components 92.5 1 2.2E-05 54.3 12.2 134 176-312 348-511 (530)
489 TIGR03324 alt_F1F0_F1_al alter 92.5 0.45 9.7E-06 56.0 8.9 89 175-267 161-265 (497)
490 TIGR03498 FliI_clade3 flagella 92.5 0.38 8.2E-06 56.0 8.2 89 175-267 139-241 (418)
491 PF01078 Mg_chelatase: Magnesi 92.5 0.2 4.3E-06 51.5 5.2 42 149-198 3-44 (206)
492 cd02021 GntK Gluconate kinase 92.5 0.082 1.8E-06 52.8 2.5 22 178-199 1-22 (150)
493 cd02023 UMPK Uridine monophosp 92.4 0.083 1.8E-06 55.7 2.7 21 178-198 1-21 (198)
494 PRK00279 adk adenylate kinase; 92.4 0.31 6.8E-06 52.0 7.1 21 178-198 2-22 (215)
495 KOG0735 AAA+-type ATPase [Post 92.4 1.6 3.5E-05 52.3 13.0 97 150-267 668-771 (952)
496 cd00544 CobU Adenosylcobinamid 92.4 0.29 6.4E-06 49.4 6.4 79 179-265 2-82 (169)
497 PRK05922 type III secretion sy 92.4 0.44 9.6E-06 55.4 8.6 89 175-267 156-258 (434)
498 PF13504 LRR_7: Leucine rich r 92.4 0.095 2.1E-06 29.8 1.6 17 547-563 1-17 (17)
499 KOG3864 Uncharacterized conser 92.3 0.027 5.8E-07 56.2 -1.1 65 1053-1117 123-189 (221)
500 cd02034 CooC The accessory pro 92.3 0.48 1E-05 44.4 7.3 21 179-199 2-22 (116)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-79 Score=749.42 Aligned_cols=617 Identities=29% Similarity=0.442 Sum_probs=452.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHhhchHhHHHHHHH
Q 036079 7 AVLTASFELLIKKLASLELFTQHEKLKADFMRWKDKMEMIQAVLADAEDRQTKDKSVKKWLDKLQNLAYDVEDILDEFET 86 (1399)
Q Consensus 7 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~w~~~lr~~~~d~ed~ld~~~~ 86 (1399)
+.++..++++.+.+... +....+.++.+..++++|..++++++++++++.....++.|.+.+++++|++||.++.|..
T Consensus 3 ~~~s~~~~~~~~~l~~~--~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 3 ACVSFGVEKLDQLLNRE--SECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred eEEEEehhhHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666655544 5566678889999999999999999999999888888999999999999999999999987
Q ss_pred HHHHHHHhhc---------------CchhHHHHHHHHHHHHHHHHHHhhhccccccccCCCc-ccccccCCccccccCCc
Q 036079 87 EALRREMLLQ---------------GPAAADQAVKEVTARLQDIERDINLLKLKNVISGGTS-RSIAQRLPTTSLVNEAK 150 (1399)
Q Consensus 87 ~~~~~~~~~~---------------~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 150 (1399)
.....+.... ........+..+.+++..+...+..++.+........ ....+..++.+......
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 6654322110 0013344455566677777666666664443221111 11112223444444444
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc-hhccCCceEEEEeCCCCCHHHHHHHHHH
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR-VQRHFEIKAWTCVSEEFDVFRISKSILN 229 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~il~ 229 (1399)
||.++.++++.+.|..++ .++++|+||||+||||||++++++.. ++.+|+.++||.||+.++...++.+|++
T Consensus 161 -VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 999999999999997642 38999999999999999999999987 9999999999999999999999999999
Q ss_pred hccCCCCC-CcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhc-cCCCCc
Q 036079 230 SVASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVN-MGADPA 307 (1399)
Q Consensus 230 ~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~-~~~~~~ 307 (1399)
.++..... .....++++..+.+.|++|||+||+||||+. .+|+.+..++|...+||+|++|||+..|+.. +++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 99875432 2223478889999999999999999999998 5599999999999899999999999999998 777778
Q ss_pred eecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhcccc---
Q 036079 308 YQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTDIWDLQ--- 384 (1399)
Q Consensus 308 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~--- 384 (1399)
++++.|+.+|||++|.+.+|.... ...+..+++|++++++|+|+|||++++|+.|+.+++.++|+++.+...+...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred ccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 999999999999999999986533 2334489999999999999999999999999999999999999987655522
Q ss_pred -cccCCchhhhhccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHHHHHHHHhccccc
Q 036079 385 -EHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVRELYSRSLFQ 463 (1399)
Q Consensus 385 -~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~ 463 (1399)
+..+.+.+++.+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+..++..+++.|++|+.+|++++|++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 2346788999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred ccC--CCCCeEEEcchhHHHHHHHhCC-----ceeeccCcccccccccccHHhhhhhcCccceeEEecccccCCCCcchh
Q 036079 464 QSS--KDASLFVMHDLINDLTQWAAGG-----RCFRMDDKFEGENRQKFSQIFLESICDVKHLRTFLPMKLSNYEGNYLA 536 (1399)
Q Consensus 464 ~~~--~~~~~~~~H~lv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~ 536 (1399)
... .....|+|||+|||+|.+++++ +...+...... ..++ ...+....|....+. |.
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~---~~~~-----~~~~~~~~rr~s~~~------~~-- 534 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGL---SEIP-----QVKSWNSVRRMSLMN------NK-- 534 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCc---cccc-----cccchhheeEEEEec------cc--
Confidence 875 3457899999999999999993 33222221000 0000 001111122221110 00
Q ss_pred hHHhhhcCCCCcccEEEecCCc--ccccC-ccccCccccceeeccCc-cccccchhhhccccccEEEcCCccccccchhh
Q 036079 537 WSVLQMLLNLPRLRVFSLHGYC--VSKLP-NEIGNLKHLRFLNLSGT-EIQILPESINSLYNLHTILLENCHRLKKLCKD 612 (1399)
Q Consensus 537 ~~~~~~~~~l~~Lr~L~L~~n~--i~~lp-~~~~~l~~L~~L~Ls~n-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 612 (1399)
......-...+.|++|-+.+|. +..++ +.|..++.|++|||++| .+.++|..|++|.+||+|++++ +.+..+|.+
T Consensus 535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~ 613 (889)
T KOG4658|consen 535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG 613 (889)
T ss_pred hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH
Confidence 0000111223345566555554 44443 23555666666666644 2445666666666666666665 445566666
Q ss_pred hcccCcccEEEcCCCcccccCCcccccccccCccceEEec
Q 036079 613 MGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 613 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 652 (1399)
+++|++|.+|++..+..+..+|.....|.+|++|.++...
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 6666666666666555444444444446666666555443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-62 Score=646.61 Aligned_cols=457 Identities=21% Similarity=0.298 Sum_probs=327.8
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe---CCC-------
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV---SEE------- 217 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~------- 217 (1399)
...+|||+++++++..+|.. ..+.+++|+||||||+||||||+++|+ ++..+|++.+|+.. ...
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l----~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHL----ESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cccccchHHHHHHHHHHHcc----ccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 45699999999999998854 335689999999999999999999998 67788998888742 111
Q ss_pred ----CC-HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEe
Q 036079 218 ----FD-VFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVT 292 (1399)
Q Consensus 218 ----~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivT 292 (1399)
.+ ...++.+++.++........... ..+++.+++||+||||||||+. ..|+.+.....+.++|++||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 12344555555433221111111 4567788999999999999876 5688887766777889999999
Q ss_pred cCChhhhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHH
Q 036079 293 TRNLGVTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDW 372 (1399)
Q Consensus 293 tr~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w 372 (1399)
||++.++...+....|+++.+++++||++|+++||+.. .+++...+++++|+++|+|+|||++++|++|+++ +..+|
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W 407 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDW 407 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHH
Confidence 99999987776677899999999999999999999754 2355688999999999999999999999999987 67899
Q ss_pred HHHHhhhhcccccccCCchhhhhccccCCch-hhhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHH
Q 036079 373 EFVLNTDIWDLQEHKCDIIPALGVSYHFLPP-QLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRD 451 (1399)
Q Consensus 373 ~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~ 451 (1399)
+.++++..... ..+|.++|++||+.|++ ..|.||+++|+|+.++.++ .+..|++.+... ++.
T Consensus 408 ~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~ 470 (1153)
T PLN03210 408 MDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNI 470 (1153)
T ss_pred HHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chh
Confidence 99998765432 34699999999999987 5999999999999987554 467788776543 122
Q ss_pred HHHHHHhcccccccCCCCCeEEEcchhHHHHHHHhCCceeeccCcccccccccccHHhhhhhcCccceeEEecccccCCC
Q 036079 452 FVRELYSRSLFQQSSKDASLFVMHDLINDLTQWAAGGRCFRMDDKFEGENRQKFSQIFLESICDVKHLRTFLPMKLSNYE 531 (1399)
Q Consensus 452 ~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~ 531 (1399)
.++.|++++||+... ..+.|||++|++|+++++++...............+.. .++.-....+.+.+. +......
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~-vl~~~~g~~~v~~i~-l~~~~~~ 545 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICD-VLEDNTGTKKVLGIT-LDIDEID 545 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHH-HHHhCcccceeeEEE-eccCccc
Confidence 388999999998753 46999999999999998776411111000000000100 111111222333221 1111111
Q ss_pred CcchhhHHhhhcCCCCcccEEEecCCcc------c-ccCccccCcc-ccceeeccCccccccchhhhccccccEEEcCCc
Q 036079 532 GNYLAWSVLQMLLNLPRLRVFSLHGYCV------S-KLPNEIGNLK-HLRFLNLSGTEIQILPESINSLYNLHTILLENC 603 (1399)
Q Consensus 532 ~~~~~~~~~~~~~~l~~Lr~L~L~~n~i------~-~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~ 603 (1399)
...+ ....|.++++|+.|.+..+.. . .+|..|..++ .||+|++.++.++.+|..+ ...+|+.|++++|
T Consensus 546 ~~~i---~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 546 ELHI---HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS 621 (1153)
T ss_pred eeee---cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc
Confidence 1111 223488888999988865532 1 4677777664 5899999999889998877 5688999999884
Q ss_pred cccccchhhhcccCcccEEEcCCCcccccCCcccccccccCccc
Q 036079 604 HRLKKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLC 647 (1399)
Q Consensus 604 ~~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~ 647 (1399)
.+..+|.++..+++|+.|+++++..+..+|. ++.+++|++|+
T Consensus 622 -~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 622 -KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred -cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 5778888888899999999988765666652 44444444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-40 Score=377.66 Aligned_cols=278 Identities=36% Similarity=0.615 Sum_probs=225.5
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
||.++++|.++|... .++.++|+|+||||+||||||++++++..++.+|+.++|+.+++..+..+++.+|+.+++.
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 789999999999863 2678999999999999999999999976689999999999999999999999999999988
Q ss_pred CCCC--CcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhccCC-CCceec
Q 036079 234 DQCT--DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVNMGA-DPAYQL 310 (1399)
Q Consensus 234 ~~~~--~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~~~~-~~~~~l 310 (1399)
.... ...+.++..+.+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567788999999999999999999999887 4788888888777789999999999988776654 457999
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhccccc---cc
Q 036079 311 KELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTDIWDLQE---HK 387 (1399)
Q Consensus 311 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 387 (1399)
++|+.+||+++|.+.++... ...++..++.+++|+++|+|+||||+++|++|+.+.+...|+.+++.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987544 123345567899999999999999999999997666778999998775544432 34
Q ss_pred CCchhhhhccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccc
Q 036079 388 CDIIPALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQ 438 (1399)
Q Consensus 388 ~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~ 438 (1399)
..+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+++|+|..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 568899999999999999999999999999999999999999999999974
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-38 Score=416.68 Aligned_cols=497 Identities=20% Similarity=0.226 Sum_probs=275.2
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCccc-ccCcccc-CccccceeeccCcccc-ccchhhhccccccEEEcCCcccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVS-KLPNEIG-NLKHLRFLNLSGTEIQ-ILPESINSLYNLHTILLENCHRL 606 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~-~lp~~~~-~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l 606 (1399)
+.++.+.+.++..|..+++|++|+|++|.+. .+|..+. ++++|++|+|++|+++ .+|. +.+++|++|+|++|...
T Consensus 76 L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~ 153 (968)
T PLN00113 76 LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS 153 (968)
T ss_pred ecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc
Confidence 3455666667777889999999999999887 6776654 8999999999999887 5554 56889999999998776
Q ss_pred ccchhhhcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchh
Q 036079 607 KKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDA 686 (1399)
Q Consensus 607 ~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~ 686 (1399)
..+|..++++++|++|++++|.....+|..++++++|++|++.+|.....
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~------------------------------ 203 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ------------------------------ 203 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc------------------------------
Confidence 78888899999999999999986678888888888888888765543210
Q ss_pred hhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCC-CCCcccCcCCCcceeEEEeeCCCCCC
Q 036079 687 REAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGT-KFPNWLGESSFLKLLFLRFEGCGKCT 765 (1399)
Q Consensus 687 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~ 765 (1399)
.+..+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|....
T Consensus 204 -------------------------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 204 -------------------------------IPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTG 250 (968)
T ss_pred -------------------------------CChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceecc
Confidence 1122333445556666666554 4455542 35566666666665554
Q ss_pred CCC-CCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCc
Q 036079 766 SLP-SVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCS 844 (1399)
Q Consensus 766 ~l~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~ 844 (1399)
.+| .++.+++|+.|++++|...+.++.. +..+++|++|++++|
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----------------------------------l~~l~~L~~L~Ls~n- 294 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPS-----------------------------------IFSLQKLISLDLSDN- 294 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchh-----------------------------------HhhccCcCEEECcCC-
Confidence 444 4566666666666665433332222 223455555555553
Q ss_pred CcccCCCC---CCCCcceEEecccC---cccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEe
Q 036079 845 KLQGTLPE---CLPLLEVLDIQCCG---QLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIV 918 (1399)
Q Consensus 845 ~l~~~~p~---~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 918 (1399)
.+.+.+|. .+++|+.|++++|. ..|..+..+++|+.|++++|... +..+.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~p~--------------------- 350 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS---GEIPK--------------------- 350 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc---CcCCh---------------------
Confidence 34434442 12333333333331 12233444455555555544411 11000
Q ss_pred ecccccccccccccccccCCcCcEEEeecCCCCCCCccc---cccccEEEEeecCCCCccchhhccCCCccEEEEccCCC
Q 036079 919 NVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPEL---QCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTS 995 (1399)
Q Consensus 919 ~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 995 (1399)
.+..+++|+.|++++|.....+|.. .++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 351 --------------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~--- 413 (968)
T PLN00113 351 --------------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD--- 413 (968)
T ss_pred --------------HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC---
Confidence 0223334444444444433333331 13444444444444444444444444455554444
Q ss_pred ccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchh
Q 036079 996 LISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEA 1074 (1399)
Q Consensus 996 l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~ 1074 (1399)
|.....+|..+.. +++|+.|++++|.....++. ...+++|+.|++++|...+.+|..
T Consensus 414 --------------------n~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 414 --------------------NSFSGELPSEFTK--LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred --------------------CEeeeECChhHhc--CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 4433333333322 44445555544443222222 123345555555554443344432
Q ss_pred hhhcCCCCccEEeecCCCCcccccc-ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceee
Q 036079 1075 WMENSSTSLESLNIYNCNSLTHIAR-IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLE 1153 (1399)
Q Consensus 1075 ~~~~~l~~L~~L~L~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 1153 (1399)
+ ..++|+.|++++|.....++. +..+++|++|++++
T Consensus 472 ~---~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~---------------------------------------- 508 (968)
T PLN00113 472 F---GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE---------------------------------------- 508 (968)
T ss_pred c---ccccceEEECcCCccCCccChhhhhhhccCEEECcC----------------------------------------
Confidence 2 234555566655533322221 12222222222222
Q ss_pred ecccccccccccCCCccccCceEEeeccCCcccccc-cccccccccccccccccccccCCcccCCCCCceEeeccCCCcc
Q 036079 1154 VSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAE-SLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLE 1232 (1399)
Q Consensus 1154 l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~ 1232 (1399)
|.....+|. ...+++|++|++++|...+.+|..+..+++|+.|++++|...+
T Consensus 509 ---------------------------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 509 ---------------------------NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred ---------------------------CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 221111211 1233556666666666666667777777788888888777666
Q ss_pred ccCCCCCCCCCccEEEecCCcCcccCcc
Q 036079 1233 SFPEGGLPYAKLTKLEILDCENLKALPN 1260 (1399)
Q Consensus 1233 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 1260 (1399)
.+|..+..+++|+.|++++|+....+|.
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCC
Confidence 7777777777788888887776666665
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.4e-38 Score=415.38 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCcccEEEecCCcccc-cCccccCccccceeeccCcccc-ccchhhh-ccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 546 LPRLRVFSLHGYCVSK-LPNEIGNLKHLRFLNLSGTEIQ-ILPESIN-SLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 546 l~~Lr~L~L~~n~i~~-lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
..+++.|+|++|.+.. +|..|..+++|++|+|++|++. .+|..+. .+++|++|+|++|+..+.+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 3579999999999874 5788999999999999999998 7888765 899999999999877677775 568999999
Q ss_pred EcCCCcccccCCcccccccccCccceEEe
Q 036079 623 RNSNVDSLEEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
++++|.+...+|..++++++|++|++.+|
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccC
Confidence 99999866677877887777777766544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.7e-29 Score=262.52 Aligned_cols=457 Identities=23% Similarity=0.293 Sum_probs=281.8
Q ss_pred HhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCc
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIK 618 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 618 (1399)
+.+++.++..|.+|++++|.+..+|.+++.+..++.|+.++|++.++|+.++.+..|..|+.++ +....+|++|+.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhh
Confidence 3445667777777777777777777777777777777777777777777777777777777777 356667777777777
Q ss_pred ccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcC
Q 036079 619 LHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLK 698 (1399)
Q Consensus 619 L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 698 (1399)
|+.|+..+|+ +..+|.+++.+.+|..|.+.+|.... +
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~------------l------------------------------ 175 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKA------------L------------------------------ 175 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhccccchhh------------C------------------------------
Confidence 7777777776 66777777666666666553332110 0
Q ss_pred ceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccce
Q 036079 699 ALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKH 778 (1399)
Q Consensus 699 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~ 778 (1399)
++..-.++.|+.|+...|....+|..++ .+.+|..|++..|++ ..+|.|+.+..|++
T Consensus 176 --------------------~~~~i~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nki-~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 176 --------------------PENHIAMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNKI-RFLPEFPGCSLLKE 232 (565)
T ss_pred --------------------CHHHHHHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhccc-ccCCCCCccHHHHH
Confidence 0000012344555555666666666653 355666666666543 34556666666666
Q ss_pred eeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCC---CC
Q 036079 779 LEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPEC---LP 855 (1399)
Q Consensus 779 L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~---l~ 855 (1399)
|++..| .++.++.+. ...+++|..|++.+ |+++ .+|.. +.
T Consensus 233 lh~g~N-~i~~lpae~----------------------------------~~~L~~l~vLDLRd-Nklk-e~Pde~clLr 275 (565)
T KOG0472|consen 233 LHVGEN-QIEMLPAEH----------------------------------LKHLNSLLVLDLRD-NKLK-EVPDEICLLR 275 (565)
T ss_pred HHhccc-HHHhhHHHH----------------------------------hcccccceeeeccc-cccc-cCchHHHHhh
Confidence 666544 222222111 23588999999999 7998 78864 57
Q ss_pred CcceEEecccC--cccccCCCCCccceEEEeCCCCccccCCCCCCCccce--eec-----cCCCCcceEEEeeccccccc
Q 036079 856 LLEVLDIQCCG--QLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVV--IFE-----KGLPKLEKVGIVNVRELTYL 926 (1399)
Q Consensus 856 ~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~--~~~-----~~~~~L~~l~l~~~~~L~~L 926 (1399)
+|+.||+++|. .+|.+++++ +|+.|.+.+|+..++...+.+...+-. ... .+.+.-+.-.-..+.
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t----- 349 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT----- 349 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC-----
Confidence 79999999995 578899999 999999999998776554432211100 000 011110000000000
Q ss_pred ccccccc--cccCCcCcEEEeecCCCCCCCcc-cc-----ccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccc
Q 036079 927 WWSETRL--LQDVRSLNRLQISRCPQLLSLPE-LQ-----CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLIS 998 (1399)
Q Consensus 927 ~l~~n~l--~~~l~~L~~L~l~~~~~~~~~~~-~~-----~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 998 (1399)
.....+ ...+.+.+.|++++-. ++.+|. .+ .-....+++.|.+ ..+|..+..+..+.+.-+..++.+..
T Consensus 350 -~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 350 -LPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISF 426 (565)
T ss_pred -CCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCcccc
Confidence 000000 2334556666666644 555665 11 2266778888773 55677676666666555555556655
Q ss_pred cC-CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCC-CCCcEEEecCCCCCcccchhhh
Q 036079 999 FP-EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLP-SRLRTIEIEGCYALKCLPEAWM 1076 (1399)
Q Consensus 999 ~~-~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~ 1076 (1399)
+| ....+++|..|++++|. +.++|..+.. +..|+.|+++.| ....+|..... ..++.+-. .+++++.++..-+
T Consensus 427 v~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~--lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtlla-s~nqi~~vd~~~l 501 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNL-LNDLPEEMGS--LVRLQTLNLSFN-RFRMLPECLYELQTLETLLA-SNNQIGSVDPSGL 501 (565)
T ss_pred chHHHHhhhcceeeecccch-hhhcchhhhh--hhhhheeccccc-ccccchHHHhhHHHHHHHHh-ccccccccChHHh
Confidence 55 35667888888888776 7788887665 777888888886 35555553332 33444444 4478888877633
Q ss_pred hcCCCCccEEeecCCCCccccc-cccccCccceeeecccc
Q 036079 1077 ENSSTSLESLNIYNCNSLTHIA-RIQLAPSLKRLIINSCH 1115 (1399)
Q Consensus 1077 ~~~l~~L~~L~L~~c~~l~~~~-~~~~~~~L~~L~l~~c~ 1115 (1399)
.++.+|..||+.+| .+..+| .++.+++|++|.+++++
T Consensus 502 -~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 -KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -hhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 56788888888865 444444 47888888888888765
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2e-28 Score=256.00 Aligned_cols=440 Identities=22% Similarity=0.223 Sum_probs=305.2
Q ss_pred CCcchhhHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccch
Q 036079 531 EGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLC 610 (1399)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 610 (1399)
..|.+ ...|+.+.++..+..|+.++|++..+|..++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+ +.+..+|
T Consensus 76 ~~n~l-~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp 153 (565)
T KOG0472|consen 76 HDNKL-SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLP 153 (565)
T ss_pred ccchh-hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc-cccccCc
Confidence 34444 467888999999999999999999999999999999999999999999999999999999999998 5789999
Q ss_pred hhhcccCcccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhh
Q 036079 611 KDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQ 690 (1399)
Q Consensus 611 ~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 690 (1399)
++++.+.+|..|++.+|+ +..+|+..-+|+.|++|+...|...
T Consensus 154 ~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~------------------------------------ 196 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLE------------------------------------ 196 (565)
T ss_pred hHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhh------------------------------------
Confidence 999999999999999999 8888877666999999876433221
Q ss_pred ccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC--
Q 036079 691 LNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-- 768 (1399)
Q Consensus 691 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-- 768 (1399)
..++.+..+..|+.|++..|.+..+|+. ..+..|..+++..|.+ +.+|
T Consensus 197 --------------------------tlP~~lg~l~~L~~LyL~~Nki~~lPef---~gcs~L~Elh~g~N~i-~~lpae 246 (565)
T KOG0472|consen 197 --------------------------TLPPELGGLESLELLYLRRNKIRFLPEF---PGCSLLKELHVGENQI-EMLPAE 246 (565)
T ss_pred --------------------------cCChhhcchhhhHHHHhhhcccccCCCC---CccHHHHHHHhcccHH-HhhHHH
Confidence 1334455667788889999999999943 3567889999888754 5555
Q ss_pred CCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCccc
Q 036079 769 SVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQG 848 (1399)
Q Consensus 769 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 848 (1399)
....++++..||+..|+ ++..|++ ..-+.+|++|++++ |.++
T Consensus 247 ~~~~L~~l~vLDLRdNk-lke~Pde-----------------------------------~clLrsL~rLDlSN-N~is- 288 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNK-LKEVPDE-----------------------------------ICLLRSLERLDLSN-NDIS- 288 (565)
T ss_pred Hhcccccceeeeccccc-cccCchH-----------------------------------HHHhhhhhhhcccC-Cccc-
Confidence 35689999999999874 3444433 23367788888888 5777
Q ss_pred CCCCCCCC--cceEEecccCccc--ccCCCC---CccceEEE-eCCCCccc-cCCCCCCCccceeeccCCCCcceEEEee
Q 036079 849 TLPECLPL--LEVLDIQCCGQLL--VTIKYL---PALSGLQI-NGCKGVVF-SSPIVPSSNQVVIFEKGLPKLEKVGIVN 919 (1399)
Q Consensus 849 ~~p~~l~~--L~~L~l~~~~~~~--~~~~~l---~~L~~L~l-~~n~~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 919 (1399)
.+|..+.+ |+.|.+.+|+.-. ..+-.. .-|++|.= ..+..... .+... .....++-..-+...
T Consensus 289 ~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e--------~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 289 SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE--------TAMTLPSESFPDIYA 360 (565)
T ss_pred cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc--------ccCCCCCCcccchhh
Confidence 67766654 5566667775321 111000 01222210 00000000 00000 000001111112233
Q ss_pred cccccccccccccc-------ccc--CCcCcEEEeecCCCCCCCcccc---ccccEEEEeecCCCCccchhhccCCCccE
Q 036079 920 VRELTYLWWSETRL-------LQD--VRSLNRLQISRCPQLLSLPELQ---CRLRFLELSYCEGLTRLPQALLTLSSLTE 987 (1399)
Q Consensus 920 ~~~L~~L~l~~n~l-------~~~--l~~L~~L~l~~~~~~~~~~~~~---~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 987 (1399)
+.+.+.|+++.-.+ |.. -.-.+..+++.|+ +..+|..+ ..+.+.-+..|+..+.+|..+..+++|..
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 33444444444332 111 1236778888887 66677633 23333334444557888999999999999
Q ss_pred EEEccCCCccccC-CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC--CCCCCCCcEEEecC
Q 036079 988 MRIAHCTSLISFP-EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE--VSLPSRLRTIEIEG 1064 (1399)
Q Consensus 988 L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~--~~~~~~L~~L~l~~ 1064 (1399)
|++++ +.+.++| +++.+..|+.|+++.|. +..+|..... +..++.+ +++++.+..++. ...+.+|.+||+.+
T Consensus 440 L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~--lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 440 LDLSN-NLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYE--LQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred eeccc-chhhhcchhhhhhhhhheecccccc-cccchHHHhh--HHHHHHH-HhccccccccChHHhhhhhhcceeccCC
Confidence 99998 5777788 57778889999999995 7888876543 3344444 444456777664 46678999999998
Q ss_pred CCCCcccchhhhhcCCCCccEEeecCCCCc
Q 036079 1065 CYALKCLPEAWMENSSTSLESLNIYNCNSL 1094 (1399)
Q Consensus 1065 c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l 1094 (1399)
+.+..+|+.. +++++|++|++.+|+.-
T Consensus 515 -Ndlq~IPp~L--gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 -NDLQQIPPIL--GNMTNLRHLELDGNPFR 541 (565)
T ss_pred -CchhhCChhh--ccccceeEEEecCCccC
Confidence 7899999887 89999999999998764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.4e-26 Score=251.39 Aligned_cols=358 Identities=21% Similarity=0.213 Sum_probs=207.9
Q ss_pred cccEEEecCCccccc-CccccCccccceeeccCccccccchhhhccccccEEEcCCccccccc-hhhhcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKL-CKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 625 (1399)
.-+.||+++|.++.+ +..|.++++|+.++|..|.++.+|.......+|+.|+|.+| .+..+ ...+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 456788888888877 67788888888888888888888887777888888888885 44444 3457888888888888
Q ss_pred CCcccccCCc-ccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEeee
Q 036079 626 NVDSLEEMPK-GFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLEW 704 (1399)
Q Consensus 626 ~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 704 (1399)
.|. +..+|. .|..
T Consensus 158 rN~-is~i~~~sfp~----------------------------------------------------------------- 171 (873)
T KOG4194|consen 158 RNL-ISEIPKPSFPA----------------------------------------------------------------- 171 (873)
T ss_pred hch-hhcccCCCCCC-----------------------------------------------------------------
Confidence 887 566552 1222
Q ss_pred cCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCccceeeecc
Q 036079 705 STDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPLLKHLEISR 783 (1399)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~Ls~ 783 (1399)
-.++++|++++|.++.+...-+ ..+.+|..|.|+.|.+....+ .|.++|+|+.|+|..
T Consensus 172 --------------------~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 172 --------------------KVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred --------------------CCCceEEeeccccccccccccc-cccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 2355566666666665554443 245577777777766544444 567788888888877
Q ss_pred cccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCCCCcceEEec
Q 036079 784 MDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECLPLLEVLDIQ 863 (1399)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l~~L~~L~l~ 863 (1399)
|.+....+..|.+ +++|+.|.+..+..-.- ..+ .+-.+.++++|+|+. |+++ .+-
T Consensus 231 N~irive~ltFqg------L~Sl~nlklqrN~I~kL--~DG---~Fy~l~kme~l~L~~-N~l~-~vn------------ 285 (873)
T KOG4194|consen 231 NRIRIVEGLTFQG------LPSLQNLKLQRNDISKL--DDG---AFYGLEKMEHLNLET-NRLQ-AVN------------ 285 (873)
T ss_pred cceeeehhhhhcC------chhhhhhhhhhcCcccc--cCc---ceeeecccceeeccc-chhh-hhh------------
Confidence 6543333334433 45555544443221000 000 122344444444444 2333 111
Q ss_pred ccCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccccccccccCCcCcEE
Q 036079 864 CCGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLNRL 943 (1399)
Q Consensus 864 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L 943 (1399)
..++.++.+|+.|++++|.+..+... . +...++|+.|
T Consensus 286 -----~g~lfgLt~L~~L~lS~NaI~rih~d---------------------~-----------------WsftqkL~~L 322 (873)
T KOG4194|consen 286 -----EGWLFGLTSLEQLDLSYNAIQRIHID---------------------S-----------------WSFTQKLKEL 322 (873)
T ss_pred -----cccccccchhhhhccchhhhheeecc---------------------h-----------------hhhcccceeE
Confidence 13456677778888888774443221 1 2344566666
Q ss_pred EeecCCCCCCCcc----ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC----CccCCCcccEEEccC
Q 036079 944 QISRCPQLLSLPE----LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP----EAALPSRLRTIDIEG 1015 (1399)
Q Consensus 944 ~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~Ls~ 1015 (1399)
++++|. +..+++ .+..|++|+|++|++...-...|..+++|+.|+|++|..-..+. .+..+++|+.|++.+
T Consensus 323 dLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 323 DLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred eccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 666665 333333 23566666666666544444456666666666666654333322 133466666666666
Q ss_pred CCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecC
Q 036079 1016 CNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEG 1064 (1399)
Q Consensus 1016 ~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~ 1064 (1399)
|+ +..+|...+.+ ++.|++|++.+|.....-+....+..|++|.+..
T Consensus 402 Nq-lk~I~krAfsg-l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 402 NQ-LKSIPKRAFSG-LEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred ce-eeecchhhhcc-CcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 65 55555544433 6666666666655333223222223566665544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.4e-23 Score=277.51 Aligned_cols=342 Identities=24% Similarity=0.381 Sum_probs=196.2
Q ss_pred cchhhccC-CCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCC
Q 036079 975 LPQALLTL-SSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSL 1053 (1399)
Q Consensus 975 ~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~ 1053 (1399)
+|..+..+ ++|+.|.+.++ .+..+|....+.+|+.|++++|. +..++..... +++|+.|++++|..++.+|....
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~--l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHS--LTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccccccc--CCCCCEEECCCCCCcCcCCcccc
Confidence 34444444 34677777663 44555654456777777777765 5556555433 77788888877777777777777
Q ss_pred CCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccccccccccCccceeeeccccCcccccCcccccccCCCC
Q 036079 1054 PSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGC 1133 (1399)
Q Consensus 1054 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 1133 (1399)
+++|++|++++|..+..+|..+ ..+++|+.|++++|+.++.+|....+++|+.|++++|..++.++.
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----------- 722 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----------- 722 (1153)
T ss_pred CCcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc-----------
Confidence 7788888888887777777665 567788888888887777777655677777777777765544321
Q ss_pred CCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCcc------cccc--cccccccccccccccc
Q 036079 1134 TSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLE------SFAE--SLDNTSLEEITISWLE 1205 (1399)
Q Consensus 1134 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~------~~~~--~~~~~~L~~L~l~~~~ 1205 (1399)
.+++|+.|+++++. +..++.... .++|++|.+.+|.... .++. ...+++|+.|++++|.
T Consensus 723 -----------~~~nL~~L~L~~n~-i~~lP~~~~-l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 723 -----------ISTNISWLDLDETA-IEEFPSNLR-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred -----------ccCCcCeeecCCCc-ccccccccc-ccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 12445566655543 222222111 2345555544432110 0000 0112345555555554
Q ss_pred cccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccEEEecCCCCCcccccc
Q 036079 1206 NLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLEIGLCPRLICKPLF 1285 (1399)
Q Consensus 1206 ~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~ 1285 (1399)
.+..+|..++++++|+.|++++|+.++.+|... .+++|+.|++++|..+..+|.. .++|+.|+++++ .++.+|.
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~- 863 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPW- 863 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChH-
Confidence 444455445555555555555554454444433 3444555555555444444332 133444444442 2222221
Q ss_pred cccccccCcccccccccCCCCcccCCCCCCCccEEecCCCCCccccccCCCCCCCCCeeeccCCCCCCcCCCCCCcc---
Q 036079 1286 EWGLNRFTSLKRLEICEGCPDLVSSPRFPASLTVLRISSMPNLICLSSIGENLTSLETLDLHFCPKLKYFPEQGLPK--- 1362 (1399)
Q Consensus 1286 ~~~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~--- 1362 (1399)
.+ ..+++|+.|++++|++++.+|.....+++|+.|++++|++++.++-...|.
T Consensus 864 --si----------------------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~ 919 (1153)
T PLN03210 864 --WI----------------------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVA 919 (1153)
T ss_pred --HH----------------------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhh
Confidence 11 236678888888888888888777888888888888888887654322221
Q ss_pred -----------ccccccccCCchHH
Q 036079 1363 -----------SLLQLIIHDCPLIE 1376 (1399)
Q Consensus 1363 -----------sL~~L~i~~c~~l~ 1376 (1399)
+...+.+.+|.+|.
T Consensus 920 ~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 920 MATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred hhcccccccCCchhccccccccCCC
Confidence 22345677776664
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=5.9e-26 Score=262.76 Aligned_cols=434 Identities=22% Similarity=0.224 Sum_probs=273.6
Q ss_pred CCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEE
Q 036079 544 LNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLR 623 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 623 (1399)
.+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|...|.+.+++.+|++|+|.+ +.+..+|.++..+++|++|+
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccc
Confidence 34455999999999999999999999999999999999999999999999999999997 68999999999999999999
Q ss_pred cCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceEee
Q 036079 624 NSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALLLE 703 (1399)
Q Consensus 624 l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 703 (1399)
+++|. ...+|.-+..++.+.++...+|.... .+.... ++.+++.
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~--~lg~~~---------------------------------ik~~~l~ 164 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQ--RLGQTS---------------------------------IKKLDLR 164 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhh--hhcccc---------------------------------chhhhhh
Confidence 99998 88899889899888888776662111 111110 1111111
Q ss_pred ecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeecc
Q 036079 704 WSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISR 783 (1399)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~ 783 (1399)
.+.. ...++..+..+.. .|++.+|.+..+. + ..+.+|+.|..+.|.+... .-.-++|+.|+.++
T Consensus 165 ~n~l-------~~~~~~~i~~l~~--~ldLr~N~~~~~d--l--s~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 165 LNVL-------GGSFLIDIYNLTH--QLDLRYNEMEVLD--L--SNLANLEVLHCERNQLSEL---EISGPSLTALYADH 228 (1081)
T ss_pred hhhc-------ccchhcchhhhhe--eeecccchhhhhh--h--hhccchhhhhhhhcccceE---EecCcchheeeecc
Confidence 0000 0011111221222 4677776655111 1 2345555555555432111 11235667777777
Q ss_pred cccceecCccccCCCCCCCCCCccEEeccccc--ccccccccCCCcccCCCCccceeeecCCcCcccCCCC---CCCCcc
Q 036079 784 MDRVKSVGPEFYGNSCSMPFPSLETLSFFHMR--EWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPE---CLPLLE 858 (1399)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~---~l~~L~ 858 (1399)
|...+... .+. -.+|++++++++. ++.+| ++.+++|+.+...+ |.++ .+|. ...+|+
T Consensus 229 n~l~~~~~-~p~-------p~nl~~~dis~n~l~~lp~w--------i~~~~nle~l~~n~-N~l~-~lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 229 NPLTTLDV-HPV-------PLNLQYLDISHNNLSNLPEW--------IGACANLEALNANH-NRLV-ALPLRISRITSLV 290 (1081)
T ss_pred Ccceeecc-ccc-------cccceeeecchhhhhcchHH--------HHhcccceEecccc-hhHH-hhHHHHhhhhhHH
Confidence 65542221 110 2356666665532 33344 34566777777766 4554 4553 234555
Q ss_pred eEEeccc--CcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccccccccccccccc
Q 036079 859 VLDIQCC--GQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLLQD 936 (1399)
Q Consensus 859 ~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~ 936 (1399)
.|.+..| ..+|.....+.+|+.|++..|++..++...+ .-.
T Consensus 291 ~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l---------------------~v~---------------- 333 (1081)
T KOG0618|consen 291 SLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL---------------------AVL---------------- 333 (1081)
T ss_pred HHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHH---------------------hhh----------------
Confidence 6655555 2345556666777777777776433332111 000
Q ss_pred CCcCcEEEeecCCCCCCCcc----ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCC--ccCCCcccE
Q 036079 937 VRSLNRLQISRCPQLLSLPE----LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPE--AALPSRLRT 1010 (1399)
Q Consensus 937 l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~ 1010 (1399)
..+|+.|+.+.|+ +...|. ..+.|+.|++.+|.+.......+.++..|+.|+|++ +.+.++|. +..++.|+.
T Consensus 334 ~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 334 NASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHH
Confidence 0113333333333 222222 345688888888887777666678888888888888 56666774 556778888
Q ss_pred EEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecC
Q 036079 1011 IDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYN 1090 (1399)
Q Consensus 1011 L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~ 1090 (1399)
|+||||. ++.+|..+.. ++.|++|...+| .+..+|+...++.|+.+|++. |+++.+-.... ...++|++||+++
T Consensus 412 L~LSGNk-L~~Lp~tva~--~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~-~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 412 LNLSGNK-LTTLPDTVAN--LGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEA-LPSPNLKYLDLSG 485 (1081)
T ss_pred Hhcccch-hhhhhHHHHh--hhhhHHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhhhhh-CCCcccceeeccC
Confidence 8888887 7778877655 778888887664 467778878888888888887 56665543321 1227888888888
Q ss_pred CCC
Q 036079 1091 CNS 1093 (1399)
Q Consensus 1091 c~~ 1093 (1399)
|..
T Consensus 486 N~~ 488 (1081)
T KOG0618|consen 486 NTR 488 (1081)
T ss_pred Ccc
Confidence 764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.4e-25 Score=243.62 Aligned_cols=347 Identities=19% Similarity=0.209 Sum_probs=241.4
Q ss_pred CCCCcchhhHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccc
Q 036079 529 NYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~ 607 (1399)
+++.|.++...+..|.++++|+.+.+..|.++.+|.......||+.|+|.+|.|+++ .+++..++.|+.||||. +.+.
T Consensus 84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is 162 (873)
T KOG4194|consen 84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-NLIS 162 (873)
T ss_pred eccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-chhh
Confidence 456677777777789999999999999999999999888888999999999999977 45789999999999999 4677
Q ss_pred cchh-hhcccCcccEEEcCCCcccccCC-cccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcch
Q 036079 608 KLCK-DMGNLIKLHHLRNSNVDSLEEMP-KGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGD 685 (1399)
Q Consensus 608 ~lp~-~i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~ 685 (1399)
.+|. .|..=.++++|+|++|. ++.+- ..|..+.+|.+|.+..|.+....
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp---------------------------- 213 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLP---------------------------- 213 (873)
T ss_pred cccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccC----------------------------
Confidence 7775 47777899999999998 66665 45888889999988877765321
Q ss_pred hhhhhccCccCcCceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCC
Q 036079 686 AREAQLNGKLNLKALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCT 765 (1399)
Q Consensus 686 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~ 765 (1399)
...|+++++|+.|++..+. +.....-.|..++.|+.|.+..|.+..+.+..+ ..+.+++.|+|+.|+...
T Consensus 214 --~r~Fk~L~~L~~LdLnrN~-------irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F-y~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 214 --QRSFKRLPKLESLDLNRNR-------IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF-YGLEKMEHLNLETNRLQA 283 (873)
T ss_pred --HHHhhhcchhhhhhccccc-------eeeehhhhhcCchhhhhhhhhhcCcccccCcce-eeecccceeecccchhhh
Confidence 1123334444455443221 111123356778888888899998888877765 357788889988887655
Q ss_pred CCC-CCCCCCccceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCc
Q 036079 766 SLP-SVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCS 844 (1399)
Q Consensus 766 ~l~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~ 844 (1399)
.-. ++.+++.|+.|++|+|.+....++. | ...++|+.|+|++ |
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~--------------------------W---------sftqkL~~LdLs~-N 327 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDS--------------------------W---------SFTQKLKELDLSS-N 327 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecch--------------------------h---------hhcccceeEeccc-c
Confidence 444 7778888899999887544433222 2 2257778888887 5
Q ss_pred CcccCCCCCCCCcceEEecccCcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccc
Q 036079 845 KLQGTLPECLPLLEVLDIQCCGQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELT 924 (1399)
Q Consensus 845 ~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~ 924 (1399)
.++ .+++ .++..+..|+.|++++|. +.++.+-.|.++++|+
T Consensus 328 ~i~-~l~~-----------------~sf~~L~~Le~LnLs~Ns---------------------i~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 328 RIT-RLDE-----------------GSFRVLSQLEELNLSHNS---------------------IDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccc-cCCh-----------------hHHHHHHHhhhhcccccc---------------------hHHHHhhHHHHhhhhh
Confidence 666 4553 334445555555555555 2223333455555555
Q ss_pred ccccccccc----------cccCCcCcEEEeecCCCCCCCcc----ccccccEEEEeecCCCCccchhhccCCCccEEEE
Q 036079 925 YLWWSETRL----------LQDVRSLNRLQISRCPQLLSLPE----LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRI 990 (1399)
Q Consensus 925 ~L~l~~n~l----------~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 990 (1399)
.|++..|.+ |..+++|+.|.+.+|+ ++.+|. .+.+|+.|+|.+|.+...-|..|..+ .|++|-+
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 555555554 5667777777777776 555554 44667777777777666666667666 6666665
Q ss_pred cc
Q 036079 991 AH 992 (1399)
Q Consensus 991 ~~ 992 (1399)
..
T Consensus 447 nS 448 (873)
T KOG4194|consen 447 NS 448 (873)
T ss_pred cc
Confidence 54
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.3e-26 Score=251.19 Aligned_cols=362 Identities=21% Similarity=0.260 Sum_probs=240.5
Q ss_pred CCCcccEEEecCCccc--ccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 545 NLPRLRVFSLHGYCVS--KLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
-++..|-.|+++|.++ .+|.....+++++.|.|..+.+..+|+.++.|.+|++|.+++| .+..+-..++.|+.|+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3556677778888776 5687788888888888888888888888888888888888884 456666677788888888
Q ss_pred EcCCCcc-cccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCcCceE
Q 036079 623 RNSNVDS-LEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNLKALL 701 (1399)
Q Consensus 623 ~l~~n~~-~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 701 (1399)
++.+|+. -..+|.++-.|..|..|++++|...
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----------------------------------------------- 116 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----------------------------------------------- 116 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-----------------------------------------------
Confidence 8877762 3457777777777777777655432
Q ss_pred eeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeee
Q 036079 702 LEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEI 781 (1399)
Q Consensus 702 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L 781 (1399)
+.+..+..-+++-.|++++|++.++|..++ .++..|..|+|++|.....+|.+..+.+|+.|+|
T Consensus 117 ---------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 117 ---------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ---------------hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 122333344567788899999999998877 4778888999999877666667888999999999
Q ss_pred cccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCC---CCCCcc
Q 036079 782 SRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPE---CLPLLE 858 (1399)
Q Consensus 782 s~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~---~l~~L~ 858 (1399)
++|+..... |+ .+.++.+|+.|.+++.+.....+|. .+.+|.
T Consensus 181 s~NPL~hfQ---------------Lr--------------------QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 181 SNNPLNHFQ---------------LR--------------------QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred CCChhhHHH---------------Hh--------------------cCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 988532211 00 1223555555666553332234553 345666
Q ss_pred eEEeccc--CcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccccccccccccccc
Q 036079 859 VLDIQCC--GQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLLQD 936 (1399)
Q Consensus 859 ~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~ 936 (1399)
.++++.| +.+|..+.++++|+.|++++|.+..+.-. ...
T Consensus 226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~---------------------------------------~~~ 266 (1255)
T KOG0444|consen 226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT---------------------------------------EGE 266 (1255)
T ss_pred hccccccCCCcchHHHhhhhhhheeccCcCceeeeecc---------------------------------------HHH
Confidence 6777666 45677788888899999988884432111 123
Q ss_pred CCcCcEEEeecCCCCCCCccc---cccccEEEEeecCCC-CccchhhccCCCccEEEEccCCCccccCC-ccCCCcccEE
Q 036079 937 VRSLNRLQISRCPQLLSLPEL---QCRLRFLELSYCEGL-TRLPQALLTLSSLTEMRIAHCTSLISFPE-AALPSRLRTI 1011 (1399)
Q Consensus 937 l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L 1011 (1399)
..+|+.|++|.|+ +..+|.. ++.|+.|.+.+|.+. .-+|..++.+.+|+.+..++ +.+.-+|+ +.-+..|+.|
T Consensus 267 W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred Hhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHh
Confidence 4456666777766 5556652 355666666666653 33667777777777776666 44555553 4556677777
Q ss_pred EccCCCccccCccccccCccCCcceEEecCCCCccccC
Q 036079 1012 DIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFP 1049 (1399)
Q Consensus 1012 ~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~ 1049 (1399)
.|+.|. +-.+|.++.. ++.|+.||+..|+.+.-.|
T Consensus 345 ~L~~Nr-LiTLPeaIHl--L~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 345 KLDHNR-LITLPEAIHL--LPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccccc-eeechhhhhh--cCCcceeeccCCcCccCCC
Confidence 777666 5556666544 6777777777766665444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-25 Score=260.18 Aligned_cols=455 Identities=20% Similarity=0.192 Sum_probs=291.5
Q ss_pred HhhhcCCCCcccEEEecCCcccccC-ccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccC
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLI 617 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 617 (1399)
+|..+..-..+..|++..|.+-..| +.+.+..+|+.|||++|++...|..|..+.+|+.|+++. +.+..+|.+++++.
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMR 91 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhh
Confidence 4444444555888999998877766 334455569999999999999999999999999999998 67899999999999
Q ss_pred cccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCc
Q 036079 618 KLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNL 697 (1399)
Q Consensus 618 ~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L 697 (1399)
+|++|+|.+|. +..+|.++..+++|+.|+++.|.+....
T Consensus 92 ~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~P---------------------------------------- 130 (1081)
T KOG0618|consen 92 NLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIP---------------------------------------- 130 (1081)
T ss_pred cchhheeccch-hhcCchhHHhhhcccccccchhccCCCc----------------------------------------
Confidence 99999999887 8999999999999999998777654211
Q ss_pred CceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeec-CCCCCCcccCcCCCcceeEEEeeCCCCCCCCC-CCCCCCc
Q 036079 698 KALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGY-GGTKFPNWLGESSFLKLLFLRFEGCGKCTSLP-SVGQLPL 775 (1399)
Q Consensus 698 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~ 775 (1399)
..+..+..++.+..++| .+..++. ..++.+++..+.....++ .+..+..
T Consensus 131 ----------------------l~i~~lt~~~~~~~s~N~~~~~lg~-------~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 131 ----------------------LVIEVLTAEEELAASNNEKIQRLGQ-------TSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred ----------------------hhHHhhhHHHHHhhhcchhhhhhcc-------ccchhhhhhhhhcccchhcchhhhhe
Confidence 01111222333344455 1112221 125566666655555444 4444444
Q ss_pred cceeeecccccceecCccccCCCCCCCCCCccEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCC-C
Q 036079 776 LKHLEISRMDRVKSVGPEFYGNSCSMPFPSLETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPEC-L 854 (1399)
Q Consensus 776 L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~-l 854 (1399)
.|+|.+|... ... . ..+++|+.+....+. +... .-+-++|+.|+..+|+-.+ ..+.. .
T Consensus 182 --~ldLr~N~~~-~~d--l------s~~~~l~~l~c~rn~-ls~l--------~~~g~~l~~L~a~~n~l~~-~~~~p~p 240 (1081)
T KOG0618|consen 182 --QLDLRYNEME-VLD--L------SNLANLEVLHCERNQ-LSEL--------EISGPSLTALYADHNPLTT-LDVHPVP 240 (1081)
T ss_pred --eeecccchhh-hhh--h------hhccchhhhhhhhcc-cceE--------EecCcchheeeeccCccee-ecccccc
Confidence 5888888654 211 1 115666666654432 2222 1235788999988865443 33332 3
Q ss_pred CCcceEEeccc--CcccccCCCCCccceEEEeCCCCccccCCCCCCCccceeeccCCCCcceEEEeeccccccccccccc
Q 036079 855 PLLEVLDIQCC--GQLLVTIKYLPALSGLQINGCKGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETR 932 (1399)
Q Consensus 855 ~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~ 932 (1399)
.+|+.++++.+ ..+|+.+..+++|+.++..+|....++.. +..+.+|+.+....|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r----------------------i~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR----------------------ISRITSLVSLSAAYNE 298 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH----------------------HhhhhhHHHHHhhhhh
Confidence 57889999887 45678888899999999999885443332 3344556666666665
Q ss_pred c------cccCCcCcEEEeecCCCCCCCcccc-----ccccEEEEeecCCCCccchhhccCCCccEEEEccCCCcc-ccC
Q 036079 933 L------LQDVRSLNRLQISRCPQLLSLPELQ-----CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLI-SFP 1000 (1399)
Q Consensus 933 l------~~~l~~L~~L~l~~~~~~~~~~~~~-----~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~ 1000 (1399)
+ ...+++|++|++..|. +..+|+.+ .+|..|+.+.|.+.......-...+.|+.|++.+|..-. .+|
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 4 3447778888887776 55666521 235666666665433222222345667777777753332 244
Q ss_pred CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchhhhhcC
Q 036079 1001 EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEAWMENS 1079 (1399)
Q Consensus 1001 ~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 1079 (1399)
.+..+.+|+.|+|++|. +..+|.....+ +..|++|++|+|. ++.+|. ...+..|++|...+ |.+..+|.. ..
T Consensus 378 ~l~~~~hLKVLhLsyNr-L~~fpas~~~k-le~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~---~~ 450 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNR-LNSFPASKLRK-LEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHS-NQLLSFPEL---AQ 450 (1081)
T ss_pred hhccccceeeeeecccc-cccCCHHHHhc-hHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcC-Cceeechhh---hh
Confidence 56667777777777776 66677665543 7777777777744 666654 34556777777766 567777733 35
Q ss_pred CCCccEEeecCCCCccccc-ccccc-CccceeeeccccC
Q 036079 1080 STSLESLNIYNCNSLTHIA-RIQLA-PSLKRLIINSCHN 1116 (1399)
Q Consensus 1080 l~~L~~L~L~~c~~l~~~~-~~~~~-~~L~~L~l~~c~~ 1116 (1399)
++.|+.+|++.| .++... ..... |+|++|+++++.+
T Consensus 451 l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 677777777753 343322 22222 6777777777654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.5e-23 Score=230.48 Aligned_cols=364 Identities=19% Similarity=0.225 Sum_probs=224.3
Q ss_pred cCCcCcEEEeecCCCC-CCCcc---ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEE
Q 036079 936 DVRSLNRLQISRCPQL-LSLPE---LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTI 1011 (1399)
Q Consensus 936 ~l~~L~~L~l~~~~~~-~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 1011 (1399)
-+|-.+..++++|... ..+|. .++++++|.|.... +..+|..++.+.+|++|.+++|+......++..+|.|+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 3566677788888876 45665 46889999998866 5779999999999999999998777777788899999999
Q ss_pred EccCCCcc-ccCccccccCccCCcceEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeec
Q 036079 1012 DIEGCNAL-KSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIY 1089 (1399)
Q Consensus 1012 ~Ls~~~~l-~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~ 1089 (1399)
.+.+|+.- ..+|..++. +..|..||+|+|. ++..|. +....++-.|+||+ ++|..+|...+ -+++.|-.||||
T Consensus 84 ~~R~N~LKnsGiP~diF~--l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lf-inLtDLLfLDLS 158 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFR--LKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLF-INLTDLLFLDLS 158 (1255)
T ss_pred hhhccccccCCCCchhcc--cccceeeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHH-HhhHhHhhhccc
Confidence 99998743 348888887 8999999999965 666664 45567889999999 78999998876 468889999999
Q ss_pred CCCCcccccc-ccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeeccccc-ccccccCC
Q 036079 1090 NCNSLTHIAR-IQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLN-LAFLSRNG 1167 (1399)
Q Consensus 1090 ~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~ 1167 (1399)
+| .+..+|+ ...+..|++|.+++++-.. ..++.+|. +++|+.|++++... +..++.+.
T Consensus 159 ~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~h---------------fQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 159 NN-RLEMLPPQIRRLSMLQTLKLSNNPLNH---------------FQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred cc-hhhhcCHHHHHHhhhhhhhcCCChhhH---------------HHHhcCcc----chhhhhhhcccccchhhcCCCch
Confidence 85 6666654 7888999999999876211 11112222 34566666665432 22222222
Q ss_pred CccccCceEEeeccCCcccccc-cccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccE
Q 036079 1168 NLPQALKCLRVRFCSKLESFAE-SLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTK 1246 (1399)
Q Consensus 1168 ~~~~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 1246 (1399)
.-..+|..++++.| ++..+|. ...+++|+.|+||+| .++++..+.+.+.+|++|++|.| .++.+|...+.++.|+.
T Consensus 219 d~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHH
Confidence 22233444444322 2233332 223344444444443 23333333444444444444442 24444444444444444
Q ss_pred EEecCCcCc-ccCccccCCCCCccEEEecCCCCCcccccccccccccCcccccccccCCCCcccCCCCCCCccEEecCCC
Q 036079 1247 LEILDCENL-KALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEICEGCPDLVSSPRFPASLTVLRISSM 1325 (1399)
Q Consensus 1247 L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c 1325 (1399)
|.+.+|... ..+|.+++.|.+|+.+..++ +.++-.|. ++..+.. |+.|.+++
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE---glcRC~k----------------------L~kL~L~~- 348 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE---GLCRCVK----------------------LQKLKLDH- 348 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhc-cccccCch---hhhhhHH----------------------HHHhcccc-
Confidence 444432211 14444444444444444443 23333332 3444444 44444443
Q ss_pred CCccccccCCCCCCCCCeeeccCCCCCCcC
Q 036079 1326 PNLICLSSIGENLTSLETLDLHFCPKLKYF 1355 (1399)
Q Consensus 1326 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~ 1355 (1399)
+.+-.+|+.+.-++-|+.|+++++|++-.-
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCCcCccCC
Confidence 445566666666666666666666666433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=6.6e-15 Score=179.32 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=59.7
Q ss_pred CcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCC
Q 036079 547 PRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSN 626 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 626 (1399)
..-.+|+|+++.++.+|..+. .+|+.|++++|+|+.+|.. +++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 346678999999999988776 4889999999999988863 577888888885 56677753 35777888887
Q ss_pred CcccccCCc
Q 036079 627 VDSLEEMPK 635 (1399)
Q Consensus 627 n~~~~~lp~ 635 (1399)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 76 555553
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=8.7e-17 Score=169.55 Aligned_cols=125 Identities=23% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCccccc-CccccCccccceeeccC-ccccccch-hhhccccccEEEcCCcccc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKL-PNEIGNLKHLRFLNLSG-TEIQILPE-SINSLYNLHTILLENCHRL 606 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~-n~i~~lp~-~i~~L~~L~~L~L~~~~~l 606 (1399)
++.|.++..-+..|..+++||.|||++|.|+.| |++|.+++.|-.|-+.+ |+|+.+|. .|++|..|+.|.+.-|...
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 445666543444488888888888888888887 78888888877776666 78888875 4778888888888775444
Q ss_pred ccchhhhcccCcccEEEcCCCcccccCCc-ccccccccCccceEEeccCC
Q 036079 607 KKLCKDMGNLIKLHHLRNSNVDSLEEMPK-GFGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 607 ~~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~~L~~L~~L~l~~~~~~~ 655 (1399)
-.....|..|++|..|.+.+|. +..++. .|..+..++++++..|....
T Consensus 154 Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcccc
Confidence 4445568888888888888887 777776 57888888888776665443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=7.1e-17 Score=170.21 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=101.5
Q ss_pred cccEEEecCCcccccC-ccccCccccceeeccCcccccc-chhhhccccccEEEcCCccccccchhh-hcccCcccEEEc
Q 036079 548 RLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQIL-PESINSLYNLHTILLENCHRLKKLCKD-MGNLIKLHHLRN 624 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 624 (1399)
.-..++|..|.|+.|| .+|+.+++||.||||+|+|+.| |.+|..|..|-.|-+.+++.++.+|.. |++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 5667899999999996 6799999999999999999977 899999999999988888899999986 899999999999
Q ss_pred CCCcccccCC-cccccccccCccceEEeccCCC--CChhcccCcccc
Q 036079 625 SNVDSLEEMP-KGFGKLTCLLTLCTFVVGKDGG--SGLRELKSLTHL 668 (1399)
Q Consensus 625 ~~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~--~~~~~L~~L~~L 668 (1399)
.-|. +..++ ..|..|++|..|.++.|.+... ..+..+..++.+
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 9888 66666 4599999999999999877653 234555555444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2e-14 Score=175.20 Aligned_cols=258 Identities=27% Similarity=0.266 Sum_probs=144.4
Q ss_pred CCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCCCCCCCccceeeecccccceecCccccCCCCCCCCCCc
Q 036079 727 KLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPSVGQLPLLKHLEISRMDRVKSVGPEFYGNSCSMPFPSL 806 (1399)
Q Consensus 727 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~~~L 806 (1399)
+-..|+++++.++.+|..+. .+++.|.+.+|.+. .+|.+ .++|++|++++|... .++. . +++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~Lt-sLP~-l--------p~sL 264 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQLT-SLPV-L--------PPGL 264 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCccC-cccC-c--------cccc
Confidence 45678888888888888663 37888888887654 35532 577888888877433 3321 0 2344
Q ss_pred cEEecccccccccccccCCCcccCCCCccceeeecCCcCcccCCCCCCCCcceEEecccCcccccCCCCCccceEEEeCC
Q 036079 807 ETLSFFHMREWEEWIPCGAGQEVDGFPKLRTLSLVCCSKLQGTLPECLPLLEVLDIQCCGQLLVTIKYLPALSGLQINGC 886 (1399)
Q Consensus 807 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 886 (1399)
+.|++.++ .++ .+|..+.+|+.|++++|.... ....+++|+.|++++|
T Consensus 265 ~~L~Ls~N------------------------------~L~-~Lp~lp~~L~~L~Ls~N~Lt~-LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 265 LELSIFSN------------------------------PLT-HLPALPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDN 312 (788)
T ss_pred ceeeccCC------------------------------chh-hhhhchhhcCEEECcCCcccc-ccccccccceeECCCC
Confidence 44444432 333 233333344444444432110 0012345666666666
Q ss_pred CCccccCCCCCCCccceeeccCCCCcceEEEeecccccccccccccccccCCcCcEEEeecCCCCCCCccccccccEEEE
Q 036079 887 KGVVFSSPIVPSSNQVVIFEKGLPKLEKVGIVNVRELTYLWWSETRLLQDVRSLNRLQISRCPQLLSLPELQCRLRFLEL 966 (1399)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~L~~L~l~~n~l~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l 966 (1399)
.+..++. ...+|+.|++++|. +..+|..+.+|+.|++
T Consensus 313 ~L~~Lp~------------------------------------------lp~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdL 349 (788)
T PRK15387 313 QLASLPA------------------------------------------LPSELCKLWAYNNQ-LTSLPTLPSGLQELSV 349 (788)
T ss_pred ccccCCC------------------------------------------CcccccccccccCc-cccccccccccceEec
Confidence 5322110 01123444444443 3345544456666666
Q ss_pred eecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCcc
Q 036079 967 SYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLV 1046 (1399)
Q Consensus 967 s~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~ 1046 (1399)
++|.+. .+|.. .++|+.|++++| .+..+|.. +++|+.|++++|. ++.+|.. .++|+.|++++|. +.
T Consensus 350 S~N~Ls-~LP~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~l-----~s~L~~LdLS~N~-Ls 415 (788)
T PRK15387 350 SDNQLA-SLPTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPVL-----PSELKELMVSGNR-LT 415 (788)
T ss_pred CCCccC-CCCCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCCc-----ccCCCEEEccCCc-CC
Confidence 666643 34432 245666666663 34445532 3567777777775 5556643 4567777887765 55
Q ss_pred ccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcc
Q 036079 1047 SFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLT 1095 (1399)
Q Consensus 1047 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~ 1095 (1399)
.+|. .+.+|+.|++++ |.++.+|..+ ..+++|+.|+|++|+.-.
T Consensus 416 sIP~--l~~~L~~L~Ls~-NqLt~LP~sl--~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 416 SLPM--LPSGLLSLSVYR-NQLTRLPESL--IHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCCc--chhhhhhhhhcc-CcccccChHH--hhccCCCeEECCCCCCCc
Confidence 5664 345777788877 5677777765 457788888888876543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.5e-13 Score=167.23 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=61.6
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCC
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNV 627 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 627 (1399)
+...|+++++.++.+|..+. ++|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 56788888888888887664 478888999998888887665 58888888885 4667777654 46888888888
Q ss_pred cccccCCcc
Q 036079 628 DSLEEMPKG 636 (1399)
Q Consensus 628 ~~~~~lp~~ 636 (1399)
. +..+|..
T Consensus 252 ~-L~~LP~~ 259 (754)
T PRK15370 252 R-ITELPER 259 (754)
T ss_pred c-cCcCChh
Confidence 7 5566643
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=4.5e-12 Score=168.80 Aligned_cols=294 Identities=15% Similarity=0.160 Sum_probs=183.3
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKS 226 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 226 (1399)
.+.+|-|+.-.+.+.+ ....+++.|+|++|.||||++.++.+. ++.++|+++... .++..+...
T Consensus 13 ~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 4457777655554422 235689999999999999999998852 236899999644 466667777
Q ss_pred HHHhccCCCCC------------CcccHHHHHHHHHHHhc--CCeEEEEEcccCccChhhHhhhccc-CCCCCCCcEEEE
Q 036079 227 ILNSVASDQCT------------DKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNESYNYWSILSCP-FEAVAPGSKIVV 291 (1399)
Q Consensus 227 il~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~~~~~~~l~~~-~~~~~~~s~iiv 291 (1399)
++..+...... ...+.......+...+. +++++|||||++..+.......... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777422111 00122223333333332 6899999999987653333323323 333456678889
Q ss_pred ecCChhhh--hcc-CCCCceecC----CCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhc
Q 036079 292 TTRNLGVT--VNM-GADPAYQLK----ELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLR 364 (1399)
Q Consensus 292 Ttr~~~~~--~~~-~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 364 (1399)
|||..... ... ......++. +|+.+|+.++|....... -.++.+.+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99974211 111 111234555 999999999998765321 1246678899999999999999988775
Q ss_pred CCCChhHHHHHHhhhhccccc-ccCCchhhhh-ccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCc
Q 036079 365 GKDDPRDWEFVLNTDIWDLQE-HKCDIIPALG-VSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSR 442 (1399)
Q Consensus 365 ~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~ 442 (1399)
....... ... +.... ....+...+. ..|+.||++.++.++..|+++ .++.+..-. +..
T Consensus 231 ~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~----- 290 (903)
T PRK04841 231 QNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG----- 290 (903)
T ss_pred hCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC-----
Confidence 4422100 000 11111 1123444433 347899999999999999986 234332221 111
Q ss_pred ccHHHHHHHHHHHHHhcccccc-cCCCCCeEEEcchhHHHHHHHh
Q 036079 443 RKLEDLGRDFVRELYSRSLFQQ-SSKDASLFVMHDLINDLTQWAA 486 (1399)
Q Consensus 443 ~~~~~~~~~~~~~L~~~~l~~~-~~~~~~~~~~H~lv~~~~~~~~ 486 (1399)
.+.+...+++|.+++++.. .+.+...|++|++++++.+...
T Consensus 291 ---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1224678999999999753 3334568999999999998765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3.5e-15 Score=138.61 Aligned_cols=108 Identities=29% Similarity=0.364 Sum_probs=67.8
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
+..+.++..|-|++|.++.+|..+..+.+|++|++++|+|+++|.+++.+++|++|+++- +.+..+|.+|+.++.|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 344555666666677766666666667777777777777777776677777777776665 3566666666666777777
Q ss_pred EcCCCccc-ccCCcccccccccCccceEEe
Q 036079 623 RNSNVDSL-EEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 623 ~l~~n~~~-~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
|+.+|+.. ..+|..|-.|+.|+-|++..|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC
Confidence 66666522 245555555555555554333
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=5.3e-13 Score=164.40 Aligned_cols=243 Identities=24% Similarity=0.366 Sum_probs=130.5
Q ss_pred cCcEEEeecCCCCCCCcc-ccccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccCCccCCCcccEEEccCCC
Q 036079 939 SLNRLQISRCPQLLSLPE-LQCRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCN 1017 (1399)
Q Consensus 939 ~L~~L~l~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~ 1017 (1399)
+...|+++++. +..+|. .+++|+.|++++|.+. .+|..+. ++|+.|++++| .+..+|. ..+++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~-LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSN-QLTSIPA-TLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCC-cCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCC-ccccCCh-hhhccccEEECcCCc
Confidence 45667777765 455665 5567888888887654 4555443 47777777775 3445553 234567777777776
Q ss_pred ccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccc
Q 036079 1018 ALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHI 1097 (1399)
Q Consensus 1018 ~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 1097 (1399)
+..+|..+ .++|+.|++++|+ +..+|. ..+++|+.|++++ +.++.+|... .++|+.|++++|. ++.+
T Consensus 253 -L~~LP~~l----~s~L~~L~Ls~N~-L~~LP~-~l~~sL~~L~Ls~-N~Lt~LP~~l----p~sL~~L~Ls~N~-Lt~L 319 (754)
T PRK15370 253 -ITELPERL----PSALQSLDLFHNK-ISCLPE-NLPEELRYLSVYD-NSIRTLPAHL----PSGITHLNVQSNS-LTAL 319 (754)
T ss_pred -cCcCChhH----hCCCCEEECcCCc-cCcccc-ccCCCCcEEECCC-CccccCcccc----hhhHHHHHhcCCc-cccC
Confidence 45666543 2356777776543 445553 2234666666666 3455554322 2345555555432 2222
Q ss_pred ccccccCccceeeeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEE
Q 036079 1098 ARIQLAPSLKRLIINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLR 1177 (1399)
Q Consensus 1098 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 1177 (1399)
|. . .+++|+.|++++|.
T Consensus 320 P~-~-------------------------------------------l~~sL~~L~Ls~N~------------------- 336 (754)
T PRK15370 320 PE-T-------------------------------------------LPPGLKTLEAGENA------------------- 336 (754)
T ss_pred Cc-c-------------------------------------------ccccceeccccCCc-------------------
Confidence 21 0 11233333333331
Q ss_pred eeccCCcccccccccccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCccc
Q 036079 1178 VRFCSKLESFAESLDNTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKA 1257 (1399)
Q Consensus 1178 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 1257 (1399)
+..+|..+ +++|+.|++++|. ++.+|..+. ++|++|++++|. +..+|..+. .+|+.|++++|. +..
T Consensus 337 ------Lt~LP~~l-~~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~-L~~ 402 (754)
T PRK15370 337 ------LTSLPASL-PPELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQASRNN-LVR 402 (754)
T ss_pred ------cccCChhh-cCcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCC-ccc
Confidence 11111111 1345555555543 334554442 577777777764 556766543 467777777754 445
Q ss_pred Cccc----cCCCCCccEEEecCCC
Q 036079 1258 LPNC----MHNLTSLLCLEIGLCP 1277 (1399)
Q Consensus 1258 lp~~----~~~l~~L~~L~l~~c~ 1277 (1399)
+|.. ...++++..|++.+++
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCC
Confidence 5543 3445677778877754
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=3.1e-15 Score=138.93 Aligned_cols=120 Identities=28% Similarity=0.316 Sum_probs=108.2
Q ss_pred CCCcchhhHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCcccc-cc
Q 036079 530 YEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRL-KK 608 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l-~~ 608 (1399)
++.|.+ ..+|+.+..+.+|++|++++|+|.++|.+++.++.||.|+++-|++..+|..|+.++-|++|||.+|+.. ..
T Consensus 40 LSHNKl-~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~ 118 (264)
T KOG0617|consen 40 LSHNKL-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENS 118 (264)
T ss_pred cccCce-eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccccc
Confidence 455555 3577889999999999999999999999999999999999999999999999999999999999997644 56
Q ss_pred chhhhcccCcccEEEcCCCcccccCCcccccccccCccceEEe
Q 036079 609 LCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 609 lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
+|..|..|+.|+-|++++|. ...+|++++++++|+.|.+..|
T Consensus 119 lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC
Confidence 89999999999999999998 8999999999999999877544
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=4.8e-11 Score=141.62 Aligned_cols=302 Identities=14% Similarity=0.100 Sum_probs=179.3
Q ss_pred cCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
.+..++||+++++++...+...- .+...+.+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 45679999999999999985432 2234456789999999999999999985433222234667777777788899999
Q ss_pred HHHhccCC-CCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccC----hhhHhhhcccCCCCCCCcE--EEEecCChh
Q 036079 227 ILNSVASD-QCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNES----YNYWSILSCPFEAVAPGSK--IVVTTRNLG 297 (1399)
Q Consensus 227 il~~l~~~-~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~----~~~~~~l~~~~~~~~~~s~--iivTtr~~~ 297 (1399)
+++++... .+....+.++..+.+.+.+. +++.+||||+++... .+.+..+...+... .+++ +|.++.+..
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 99998762 22233345666677777664 467899999997642 12233333322211 2323 566655543
Q ss_pred hhhccC-------CCCceecCCCChhhHHHHHHHhhcCC--CCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh--c--
Q 036079 298 VTVNMG-------ADPAYQLKELSNDDCLCVLTQISLGA--RDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL--R-- 364 (1399)
Q Consensus 298 ~~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l--~-- 364 (1399)
+..... ....+.+.+++.++..+++..++... .....+...+.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 12357899999999999998876321 1111122223333333333455777777764332 1
Q ss_pred -CCC--ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccCC--CcccChHHHHHH--HHHcCCcc
Q 036079 365 -GKD--DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPK--DYEFHEEEIILL--WIAEGFLH 437 (1399)
Q Consensus 365 -~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~--~~~i~~~~l~~~--w~~~g~i~ 437 (1399)
+.+ +.+++..+.+... .....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 3445555544321 123345678999998887766653321 133555555432 33332211
Q ss_pred ccCCcccHHHHHHHHHHHHHhccccccc
Q 036079 438 QANSRRKLEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
.+ .......+|+.+|...|+|+..
T Consensus 335 ~~----~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EP----RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred Cc----CcHHHHHHHHHHHHhcCCeEEE
Confidence 11 1134467799999999999753
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=4.7e-10 Score=131.72 Aligned_cols=302 Identities=14% Similarity=0.105 Sum_probs=175.2
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh-ccC---CceEEEEeCCCCCHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHF---EIKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 223 (1399)
+..++||+++++++..++...- .+...+.+.|+|++|+|||++++.+++..... ... -..+|+++....+..++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 4579999999999999997532 12345678999999999999999999743211 111 13568888877788889
Q ss_pred HHHHHHhcc---CCCCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccC---hhhHhhhcccC-CCCC--CCcEEEEe
Q 036079 224 SKSILNSVA---SDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNES---YNYWSILSCPF-EAVA--PGSKIVVT 292 (1399)
Q Consensus 224 ~~~il~~l~---~~~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~---~~~~~~l~~~~-~~~~--~~s~iivT 292 (1399)
+..+++++. ...+....+..+....+.+.+. +++++||||+++... ......+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999984 2222122334455555656553 578999999997652 11122222221 1111 22344555
Q ss_pred cCChhhhhccC-------CCCceecCCCChhhHHHHHHHhhcCC-CCCCCChhhHHHHHHHHHHcCCChHH-HHHHHhhh
Q 036079 293 TRNLGVTVNMG-------ADPAYQLKELSNDDCLCVLTQISLGA-RDFSMHQSLKEVGEKIAMKCKGLPLA-AKTLGSLL 363 (1399)
Q Consensus 293 tr~~~~~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~~~l 363 (1399)
+........+. ....+.+.+.+.+|..+++..++... ......++..+.+.+++....|.|-. +.++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54433211111 12358899999999999999876311 11112233334556677777888744 33332211
Q ss_pred --c---CC--CChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccC--CCcccChHHHHHHH--HH
Q 036079 364 --R---GK--DDPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFP--KDYEFHEEEIILLW--IA 432 (1399)
Q Consensus 364 --~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~~~~l~~~w--~~ 432 (1399)
. +. -+.++.+.+.+... .....-++..||.+.|..+..++..- ++..+...++...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 11 13334444333221 12334456789998887776655321 33446666666633 12
Q ss_pred cCCccccCCcccHHHHHHHHHHHHHhccccccc
Q 036079 433 EGFLHQANSRRKLEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 433 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
+.+-. ....+....+++.+|...|+|...
T Consensus 322 ~~~~~----~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDIGV----DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HhcCC----CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 21111 112246678899999999999864
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.23 E-value=3.1e-10 Score=133.70 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=192.7
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKS 226 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 226 (1399)
+...|-|.. +.+.|.. ....|.+.|..|+|.||||++.+.+. ....=..++|.++++. .++......
T Consensus 18 ~~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHH
Confidence 444555554 5555542 34679999999999999999999975 1222356899998765 467888888
Q ss_pred HHHhccCCCCC------------CcccHHHHHHHHHHHhc--CCeEEEEEcccCccChhhHhhhcc-cCCCCCCCcEEEE
Q 036079 227 ILNSVASDQCT------------DKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNESYNYWSILSC-PFEAVAPGSKIVV 291 (1399)
Q Consensus 227 il~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~~~~~~~l~~-~~~~~~~~s~iiv 291 (1399)
++..++...+. ...+...+.+.+...+. .++..+||||.+-......+.-.. .+...+.+-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88888743332 12233344444444443 578999999987654333333233 3345567889999
Q ss_pred ecCChhhhhc---cCCCCceec----CCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhc
Q 036079 292 TTRNLGVTVN---MGADPAYQL----KELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLR 364 (1399)
Q Consensus 292 Ttr~~~~~~~---~~~~~~~~l----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 364 (1399)
|||...-..- .-....+++ =.|+.+|+.++|...... +-.+..+..+.++.+|-+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9998543211 111122333 368899999999887522 12256678999999999999999998888
Q ss_pred CCCChhHHHHHHhhhhcccccccCCchh-hhhccccCCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCcc
Q 036079 365 GKDDPRDWEFVLNTDIWDLQEHKCDIIP-ALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRR 443 (1399)
Q Consensus 365 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~ 443 (1399)
+..+.+.-...+.-. ..-+.. ...--++.||+++|..+.-+|+++.- -..|...-
T Consensus 239 ~~~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------------- 294 (894)
T COG2909 239 NNTSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------------- 294 (894)
T ss_pred CCCcHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------
Confidence 443333222222110 001111 23334789999999999999998532 12222211
Q ss_pred cHHHHHHHHHHHHHhccccc-ccCCCCCeEEEcchhHHHHHHHhCC
Q 036079 444 KLEDLGRDFVRELYSRSLFQ-QSSKDASLFVMHDLINDLTQWAAGG 488 (1399)
Q Consensus 444 ~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~~~H~lv~~~~~~~~~~ 488 (1399)
+-++.|..++++|.+++++- +-++.+..|+.|.+..||.+..-..
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 11345778899999999884 5556778999999999998875543
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=1.3e-09 Score=122.05 Aligned_cols=182 Identities=19% Similarity=0.143 Sum_probs=116.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHH----H
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLK----K 251 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~----~ 251 (1399)
.+++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..++..++.... . .+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-G-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-C-CCHHHHHHHHHHHHHH
Confidence 4589999999999999999999753321 11 12233 33445778899999988876532 2 22222223332 2
Q ss_pred H-hcCCeEEEEEcccCccChhhHhhhcccCC---CCCCCcEEEEecCChhhhhccC----------CCCceecCCCChhh
Q 036079 252 Q-LSGKKFLLVLDDVWNESYNYWSILSCPFE---AVAPGSKIVVTTRNLGVTVNMG----------ADPAYQLKELSNDD 317 (1399)
Q Consensus 252 ~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~---~~~~~s~iivTtr~~~~~~~~~----------~~~~~~l~~l~~~~ 317 (1399)
. ..+++.++|+||+|......++.+..... .......|++|.... ...... ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 25788999999999877666666543221 112233455665532 211111 01347899999999
Q ss_pred HHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 318 CLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
..+++..............-.++..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764322111122346788999999999999999998776
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=1.9e-09 Score=123.29 Aligned_cols=280 Identities=17% Similarity=0.157 Sum_probs=151.7
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
-.+|+|++..++.+..++..... .+...+.+.|+|++|+|||++|+.+++.. ...+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 35699999999999888864211 23345678899999999999999999843 2211 122211 11222233344
Q ss_pred HHhccCCCCCCcccH----HHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhccC
Q 036079 228 LNSVASDQCTDKDDL----NLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVNMG 303 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~~~ 303 (1399)
+..+....---.++. ....+.+...+.+.+..+|+|+...... +...+ .+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHH
Confidence 443322110000111 1122334444555555666665433211 00011 22455666777543322211
Q ss_pred --CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhc
Q 036079 304 --ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTDIW 381 (1399)
Q Consensus 304 --~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~ 381 (1399)
....+++++++.++..+++.+.+.... . .-.++.+..|++.|+|.|-.+..+...+ ..|....+...-
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~I 238 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILG-V---EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGVI 238 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCCC
Confidence 123589999999999999998875432 1 2235678999999999996554444332 122211110000
Q ss_pred ccccccCCchhhhhccccCCchhhhhhhh-hccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHHHHH-HHHhc
Q 036079 382 DLQEHKCDIIPALGVSYHFLPPQLKQCFA-YCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVR-ELYSR 459 (1399)
Q Consensus 382 ~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 459 (1399)
. ...-......+...|..|++..+..+. ....|+.+ .+..+.+.... | .. .+.+++.++ .|++.
T Consensus 239 ~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 239 T-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----EE----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred C-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----CC----cchHHHHhhHHHHHc
Confidence 0 000012234456778889988888776 66677655 45555543322 1 11 234555566 89999
Q ss_pred ccccccC
Q 036079 460 SLFQQSS 466 (1399)
Q Consensus 460 ~l~~~~~ 466 (1399)
+||+...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997554
No 29
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.10 E-value=5.1e-09 Score=124.20 Aligned_cols=305 Identities=13% Similarity=0.089 Sum_probs=169.0
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch---hccCC--ceEEEEeCCCCCHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRHFE--IKAWTCVSEEFDVFR 222 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 222 (1399)
+..++|||+++++|...|...-. +.....++.|+|++|+|||+.++.|....+. +...+ .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 56789999999999999975422 2233467889999999999999999864321 11222 356888887788889
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhc---CCeEEEEEcccCccChhhHhhhcccCCC-CCCCcEEEE--ecCCh
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLS---GKKFLLVLDDVWNESYNYWSILSCPFEA-VAPGSKIVV--TTRNL 296 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~k~~LiVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iiv--Ttr~~ 296 (1399)
++..|++++....+.......+....+...+. +...+||||+++......-+.+...+.+ ...+++|+| ++.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999865544334344445555555542 2346899999965431111222222221 123455444 33321
Q ss_pred --------hhhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCC-
Q 036079 297 --------GVTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKD- 367 (1399)
Q Consensus 297 --------~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~- 367 (1399)
.+...++ ...+...|.+.++..+++..++......-.+..++-+|+.++...|..-.||.++-.+...+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1222222 234778999999999999998754322222233444444444444556777777665553321
Q ss_pred ---ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccCC---CcccChHHHHHHH--HHcCCcccc
Q 036079 368 ---DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPK---DYEFHEEEIILLW--IAEGFLHQA 439 (1399)
Q Consensus 368 ---~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~---~~~i~~~~l~~~w--~~~g~i~~~ 439 (1399)
..++-+++.+... ...+.-....||.+.|..+..+...-+ ...++...+.... +++..-. .
T Consensus 992 skVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk-~ 1060 (1164)
T PTZ00112 992 QKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK-Y 1060 (1164)
T ss_pred CccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh-h
Confidence 1122222222110 011233346788887776654433211 2235544444322 2330000 0
Q ss_pred CCcccHHHHHHHHHHHHHhccccccc
Q 036079 440 NSRRKLEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 440 ~~~~~~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
-+.+..-+...+|+.+|...|+|-..
T Consensus 1061 iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1061 IGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred cCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 01111122667888999988888643
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=2.1e-10 Score=126.00 Aligned_cols=196 Identities=23% Similarity=0.218 Sum_probs=100.8
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH---
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI--- 227 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 227 (1399)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+.. +..-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 799999999999998643 34689999999999999999999733 221113445544443322 111121
Q ss_pred -----------HHhccCCCC-----CCcccHHHHHHHHHHHhc--CCeEEEEEcccCccC------hhhHhhhcccCCC-
Q 036079 228 -----------LNSVASDQC-----TDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNES------YNYWSILSCPFEA- 282 (1399)
Q Consensus 228 -----------l~~l~~~~~-----~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~------~~~~~~l~~~~~~- 282 (1399)
...+..... ............+.+.+. +++++||+||++... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111100 011122222223333332 355999999996654 1111222222222
Q ss_pred -CCCCcEEEEecCChhhhhc--------cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 283 -VAPGSKIVVTTRNLGVTVN--------MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 283 -~~~~s~iivTtr~~~~~~~--------~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
......+|+++....+... .+....+.+++++.+++++++....-.. ... +..++..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1233344455444433322 1222358999999999999999875332 111 223566699999999999
Q ss_pred HHHHH
Q 036079 354 LAAKT 358 (1399)
Q Consensus 354 lal~~ 358 (1399)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98865
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.9e-09 Score=122.77 Aligned_cols=278 Identities=16% Similarity=0.119 Sum_probs=149.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+|||++..++++..++..... .....+.+.|+|++|+|||+||+.+++.. ...+ ..+....... ...+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~-~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEK-PGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcC-chhHHHHH
Confidence 3699999999999998864321 22345568899999999999999999742 2221 1121111111 12222333
Q ss_pred HhccCCCCCCcccH----HHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhccC-
Q 036079 229 NSVASDQCTDKDDL----NLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVNMG- 303 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~~~- 303 (1399)
..++...---.++. ....+.+...+.+.+..+|+|+...... + ... ..+.+-|..||+...+.....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~--~---~~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARS--V---RLD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccc--e---eec---CCCeEEEEecCCccccCHHHHh
Confidence 33322110000000 1223345555555666666666533321 1 111 123455666777643322211
Q ss_pred -CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhcc
Q 036079 304 -ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTDIWD 382 (1399)
Q Consensus 304 -~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~ 382 (1399)
....+++++++.++..+++.+.+.... . .-.++++..|++.|+|.|-.+..++..+ |..+.......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~-~---~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLN-V---EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhC-C---CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 123578999999999999998875322 1 1235677889999999997665554432 11110000000
Q ss_pred cc-cccCCchhhhhccccCCchhhhhhhh-hccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHHHHH-HHHhc
Q 036079 383 LQ-EHKCDIIPALGVSYHFLPPQLKQCFA-YCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVR-ELYSR 459 (1399)
Q Consensus 383 ~~-~~~~~~~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 459 (1399)
.. +.-......+...|..++++.+..+. .++.+..+ .+..+.+.... |- ....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHc
Confidence 00 00001122256678889998887776 55666543 34443333222 11 1245667778 69999
Q ss_pred ccccccC
Q 036079 460 SLFQQSS 466 (1399)
Q Consensus 460 ~l~~~~~ 466 (1399)
+||+...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997543
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.06 E-value=3e-12 Score=137.16 Aligned_cols=89 Identities=16% Similarity=0.385 Sum_probs=50.8
Q ss_pred ccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCC---CCCCCCCcEEEecCCCCCcccchhhhhcCCCCcc
Q 036079 1008 LRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPE---VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLE 1084 (1399)
Q Consensus 1008 L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 1084 (1399)
|+.|.++||.....-+..-+..+++++++|.+.+|..+++..- ...+++|++|++..|..+++.........|++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 4555555554444333332333356666666666654443211 2345666667777777777666665566777777
Q ss_pred EEeecCCCCccc
Q 036079 1085 SLNIYNCNSLTH 1096 (1399)
Q Consensus 1085 ~L~L~~c~~l~~ 1096 (1399)
+|+++.|+.++.
T Consensus 220 ~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 220 YLNLSWCPQISG 231 (483)
T ss_pred HhhhccCchhhc
Confidence 777777776665
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=9e-11 Score=135.78 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=19.5
Q ss_pred CCcceEEecccCc-------ccccCCCCCccceEEEeCCC
Q 036079 855 PLLEVLDIQCCGQ-------LLVTIKYLPALSGLQINGCK 887 (1399)
Q Consensus 855 ~~L~~L~l~~~~~-------~~~~~~~l~~L~~L~l~~n~ 887 (1399)
+.|++|++++|.. +...+..+++|+++++++|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 4555555555532 12344556778888888877
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=1.1e-11 Score=133.07 Aligned_cols=301 Identities=16% Similarity=0.215 Sum_probs=169.7
Q ss_pred ccEEEEeecCCCCc--cchhhccCCCccEEEEccCCCccccC---CccCCCcccEEEccCCCccccCccccccCccCCcc
Q 036079 961 LRFLELSYCEGLTR--LPQALLTLSSLTEMRIAHCTSLISFP---EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQ 1035 (1399)
Q Consensus 961 L~~L~ls~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~ 1035 (1399)
|+.|.+.+|.-.+. +-....++++++.|++.+|..+++.. ....+++|++|++..|..++..........+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 44555555543332 23344567888888888877665433 13457788888888887776654443334588888
Q ss_pred eEEecCCCCcccc---CCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccccccc---cccCcccee
Q 036079 1036 SLKIRYCKSLVSF---PEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIARI---QLAPSLKRL 1109 (1399)
Q Consensus 1036 ~L~ls~~~~l~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~---~~~~~L~~L 1109 (1399)
+|++++|+.+..- +.......++.+.+.+|..++.-........++.+..+++.+|..+++...+ ..+..|+.|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 8888888866541 1123345577777777766655444444456666777777788777776532 345566777
Q ss_pred eeccccCcccccCcccccccCCCCCCCCCCCCCCCCccccceeeecccccccccccCCCccccCceEEeeccCCcccccc
Q 036079 1110 IINSCHNLRTLTGEKDIRCSSNGCTSLTPFSSENELPATLEHLEVSYCLNLAFLSRNGNLPQALKCLRVRFCSKLESFAE 1189 (1399)
Q Consensus 1110 ~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 1189 (1399)
..++|..+....-. ..+...++|+.|.+..|..++..... .-
T Consensus 300 ~~s~~t~~~d~~l~-----------------aLg~~~~~L~~l~l~~c~~fsd~~ft---------------------~l 341 (483)
T KOG4341|consen 300 CYSSCTDITDEVLW-----------------ALGQHCHNLQVLELSGCQQFSDRGFT---------------------ML 341 (483)
T ss_pred cccCCCCCchHHHH-----------------HHhcCCCceEEEeccccchhhhhhhh---------------------hh
Confidence 77777654332100 01112244555555555443322110 01
Q ss_pred cccccccccccccccccccc--cCCcccCCCCCceEeeccCCCcccc-----CCCCCCCCCccEEEecCCcCcc-cCccc
Q 036079 1190 SLDNTSLEEITISWLENLKI--LPGGLHNLHHLQEIRIEQCPNLESF-----PEGGLPYAKLTKLEILDCENLK-ALPNC 1261 (1399)
Q Consensus 1190 ~~~~~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~-~lp~~ 1261 (1399)
..+++.|+.+++..|..+.. +-.--.+++.|++|.+++|..++.- .........|+.+.+.+|+.++ ..-..
T Consensus 342 ~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 342 GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 22445566666665543322 2222345677777777777655332 2233345677788888887765 23345
Q ss_pred cCCCCCccEEEecCCCCCcccccccccccccCccccccc
Q 036079 1262 MHNLTSLLCLEIGLCPRLICKPLFEWGLNRFTSLKRLEI 1300 (1399)
Q Consensus 1262 ~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~~L~~L~l 1300 (1399)
+..+.+|+.+++-.|......+.. ..-.++++++...+
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~-~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAIS-RFATHLPNIKVHAY 459 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhH-HHHhhCccceehhh
Confidence 677778888888887776654321 12234555555443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=6.6e-10 Score=139.55 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred ccccEEEEeecCCCCccchhhccCCCccEEEEccCCC-ccccCC--ccCCCcccEEEccCCCccccCccccccCccCCcc
Q 036079 959 CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTS-LISFPE--AALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQ 1035 (1399)
Q Consensus 959 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~--~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~ 1035 (1399)
...+...+-+|.+.. ++.. ..++.|++|-+.+|.. +..++. +..++.|++||+++|..+..+|..+.. +-+|+
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--LVHLR 598 (889)
T ss_pred hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--hhhhh
Confidence 455666666555321 2211 1234566666666542 333332 455666666666666666666666543 66666
Q ss_pred eEEecCCCCccccCC-CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecC
Q 036079 1036 SLKIRYCKSLVSFPE-VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYN 1090 (1399)
Q Consensus 1036 ~L~ls~~~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~ 1090 (1399)
+|++++.. +..+|. +..+..|.+|++..+..+..++... ..+++|++|.+..
T Consensus 599 yL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred cccccCCC-ccccchHHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 66666643 334442 3445555666665555444443322 2355555555554
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=1.1e-08 Score=129.35 Aligned_cols=312 Identities=14% Similarity=0.169 Sum_probs=184.5
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc-hhccCCceEEEEeCCCC---CHHHHHHH
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR-VQRHFEIKAWTCVSEEF---DVFRISKS 226 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~---~~~~~~~~ 226 (1399)
++||+.+++.+.+.+... ..+...++.|.|.+|||||+++++|..... .++.|-...+-....+. ...+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 799999999999999765 445667999999999999999999987321 11222111111122222 12344455
Q ss_pred HHHhccCCCCC----------------------------------------CcccHH-----HHHHHHHHHhc-CCeEEE
Q 036079 227 ILNSVASDQCT----------------------------------------DKDDLN-----LLQEKLKKQLS-GKKFLL 260 (1399)
Q Consensus 227 il~~l~~~~~~----------------------------------------~~~~~~-----~~~~~l~~~l~-~k~~Li 260 (1399)
++.++..+... .+.... .....+..... .++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 55544221100 000001 12222333333 569999
Q ss_pred EEcccCccChhhHhhhcccCCCCC----CCcEE--EEecCCh--hhhhccCCCCceecCCCChhhHHHHHHHhhcCCCCC
Q 036079 261 VLDDVWNESYNYWSILSCPFEAVA----PGSKI--VVTTRNL--GVTVNMGADPAYQLKELSNDDCLCVLTQISLGARDF 332 (1399)
Q Consensus 261 VlDdv~~~~~~~~~~l~~~~~~~~----~~s~i--ivTtr~~--~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 332 (1399)
|+||+++.+....+.+........ .-..| +.|.+.. .+.........+.+.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 999998877666555433322221 01122 2333332 2223333335799999999999999988763322
Q ss_pred CCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCC------ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhh
Q 036079 333 SMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKD------DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLK 406 (1399)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~------~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k 406 (1399)
....+....|+++..|+|+.+..+-.++.... +...|..-.. .-.......++...+..-.+.||...|
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~--~i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA--SLGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH--hcCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 22356778999999999999999999887642 2233332111 111111112355568888999999999
Q ss_pred hhhhhccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHHHHHHHHhcccccccC-----CCCCeE---EEcchh
Q 036079 407 QCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVRELYSRSLFQQSS-----KDASLF---VMHDLI 478 (1399)
Q Consensus 407 ~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~---~~H~lv 478 (1399)
..+...|++- -.|+.+.|...|.. .....+....+.|....++-.++ ...... ..||.|
T Consensus 312 ~Vl~~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999985 44567777766632 22455666666666665554221 111112 468888
Q ss_pred HHHHHHH
Q 036079 479 NDLTQWA 485 (1399)
Q Consensus 479 ~~~~~~~ 485 (1399)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8877653
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=3.2e-10 Score=131.14 Aligned_cols=88 Identities=22% Similarity=0.155 Sum_probs=42.0
Q ss_pred hhcCCCCcccEEEecCCcccc-------cCccccCccccceeeccCcccc-ccchhhhcccc---ccEEEcCCcccc---
Q 036079 541 QMLLNLPRLRVFSLHGYCVSK-------LPNEIGNLKHLRFLNLSGTEIQ-ILPESINSLYN---LHTILLENCHRL--- 606 (1399)
Q Consensus 541 ~~~~~l~~Lr~L~L~~n~i~~-------lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~---L~~L~L~~~~~l--- 606 (1399)
..+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+..+.+ |++|++++|...
T Consensus 45 ~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 45 SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH
Confidence 334455555555555554432 1233444555555555555554 23333433333 555555554322
Q ss_pred -ccchhhhccc-CcccEEEcCCCc
Q 036079 607 -KKLCKDMGNL-IKLHHLRNSNVD 628 (1399)
Q Consensus 607 -~~lp~~i~~L-~~L~~L~l~~n~ 628 (1399)
..++..+..+ ++|+.|++++|.
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCc
Confidence 1222334444 555555555555
No 38
>PF05729 NACHT: NACHT domain
Probab=98.89 E-value=5e-09 Score=107.82 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=88.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhcc----CCceEEEEeCCCCCHH---HHHHHHHHhccCCCCCCcccHHHHHHHH
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEEFDVF---RISKSILNSVASDQCTDKDDLNLLQEKL 249 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~l 249 (1399)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+.... ...... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHH---HH
Confidence 58999999999999999999875433222 3456677665544332 3333333333221 111111 12
Q ss_pred HHH-hcCCeEEEEEcccCccChh-------hHhhhc-ccCCC-CCCCcEEEEecCChhh---hhccCCCCceecCCCChh
Q 036079 250 KKQ-LSGKKFLLVLDDVWNESYN-------YWSILS-CPFEA-VAPGSKIVVTTRNLGV---TVNMGADPAYQLKELSND 316 (1399)
Q Consensus 250 ~~~-l~~k~~LiVlDdv~~~~~~-------~~~~l~-~~~~~-~~~~s~iivTtr~~~~---~~~~~~~~~~~l~~l~~~ 316 (1399)
... .+.++++||+|++++.... .+..+. ..+.. ..++.+++||+|.... .........+++++|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 2578999999999764321 122222 22222 2568999999998655 333444457999999999
Q ss_pred hHHHHHHHhh
Q 036079 317 DCLCVLTQIS 326 (1399)
Q Consensus 317 ~~~~l~~~~~ 326 (1399)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=4e-10 Score=125.61 Aligned_cols=99 Identities=28% Similarity=0.280 Sum_probs=48.7
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCcc
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDS 629 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~ 629 (1399)
...||+.|++..+|..++.+..|..|.|.+|.|..+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNk- 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNK- 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecCc-
Confidence 34445555555555555555555555555555555555555555555555554 23444554444443 4444444444
Q ss_pred cccCCcccccccccCccceEEe
Q 036079 630 LEEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 630 ~~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
++.+|.+++.+..|.+|+.+.|
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred cccCCcccccchhHHHhhhhhh
Confidence 4455555554444444444443
No 40
>PTZ00202 tuzin; Provisional
Probab=98.77 E-value=6e-07 Score=99.23 Aligned_cols=172 Identities=15% Similarity=0.184 Sum_probs=105.2
Q ss_pred ccccccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 142 TTSLVNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 142 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
+..+.+.+.|+||+++++++...|...+ ...+++++|+|++|+|||||++.+..... + .+++.-.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHH
Confidence 3445567789999999999999996533 23456999999999999999999996322 2 23332222 679
Q ss_pred HHHHHHHHhccCCCCCC-cccHHHHHHHHHHHh-c-CCeEEEEEcccCccCh-hhHhhhcccCCCCCCCcEEEEecCChh
Q 036079 222 RISKSILNSVASDQCTD-KDDLNLLQEKLKKQL-S-GKKFLLVLDDVWNESY-NYWSILSCPFEAVAPGSKIVVTTRNLG 297 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~-~~~~~~~~~~l~~~l-~-~k~~LiVlDdv~~~~~-~~~~~l~~~~~~~~~~s~iivTtr~~~ 297 (1399)
++++.++.+++.+.... .+-.+.+.+.+.+.- . +++.+||+-==...+. .-+.+. ..+.....-|+|++----+.
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evples 402 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhh
Confidence 99999999999743312 122344444444332 2 6777777642211111 111121 12333445677777554433
Q ss_pred hhhc---cCCCCceecCCCChhhHHHHHHHh
Q 036079 298 VTVN---MGADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 298 ~~~~---~~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
+... ...-+.|-+.+++.++|.++-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 3211 111135889999999998887664
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.77 E-value=4e-08 Score=106.48 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=107.7
Q ss_pred ccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 146 VNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 146 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
+.+.+++|-...+.++++ .+.+.-+.+||++|+||||||+.++. .....| ..++...+-.+
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvk--- 87 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVK--- 87 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHH---
Confidence 445667777777776655 23566778999999999999999997 333333 23333322222
Q ss_pred HHHHhccCCCCCCcccHHHHHHHH-HHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE--ecCChhhh---
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKL-KKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV--TTRNLGVT--- 299 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l-~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--Ttr~~~~~--- 299 (1399)
++.+..+.- +....++++++++|.|+.....+.+.+ +|...+|.-|+| ||-++...
T Consensus 88 ---------------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 88 ---------------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNP 149 (436)
T ss_pred ---------------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecH
Confidence 222222222 223458999999999988765555554 344567777777 66665432
Q ss_pred hccCCCCceecCCCChhhHHHHHHHhhcCCC-CCC--CChhhHHHHHHHHHHcCCChHH
Q 036079 300 VNMGADPAYQLKELSNDDCLCVLTQISLGAR-DFS--MHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 300 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~--~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
.-.+...++++++|+.++..+++.+.+.... ... ...-.+++...+++.++|---+
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 1123346799999999999999998442211 111 0112245677888999886543
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=3.4e-10 Score=126.09 Aligned_cols=179 Identities=23% Similarity=0.338 Sum_probs=141.0
Q ss_pred HHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccC
Q 036079 538 SVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLI 617 (1399)
Q Consensus 538 ~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 617 (1399)
.+|..+..|..|..+.|..|.+..+|..++++..|.||||+.|++..+|..++.|+ |+.|-+++ +.++.+|..|+.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccch
Confidence 46666778888999999999999999999999999999999999999999999887 99999998 57999999999999
Q ss_pred cccEEEcCCCcccccCCcccccccccCccceEEeccCCCCChhcccCcccccCceEEeccCCCCCcchhhhhhccCccCc
Q 036079 618 KLHHLRNSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSGLRELKSLTHLQGTLKISKLENVKDVGDAREAQLNGKLNL 697 (1399)
Q Consensus 618 ~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~~~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L 697 (1399)
.|.+||.+.|. +..+|..++.+.+|+.|.+..|....
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~------------------------------------------ 203 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLED------------------------------------------ 203 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhh------------------------------------------
Confidence 99999999998 88999999999999888765443211
Q ss_pred CceEeeecCCCCchhHHHHHHhccCCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCCCC---CCCCC
Q 036079 698 KALLLEWSTDISDAAEVETRVLDKLEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSLPS---VGQLP 774 (1399)
Q Consensus 698 ~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~---l~~l~ 774 (1399)
.++.+. .-.|..|+++.|++..+|-.+ ..+..|++|.|.+|.+...... -+...
T Consensus 204 --------------------lp~El~-~LpLi~lDfScNkis~iPv~f--r~m~~Lq~l~LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 204 --------------------LPEELC-SLPLIRLDFSCNKISYLPVDF--RKMRHLQVLQLENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred --------------------CCHHHh-CCceeeeecccCceeecchhh--hhhhhheeeeeccCCCCCChHHHHhcccee
Confidence 111111 113667888888888888877 4588888888888876443322 23444
Q ss_pred ccceeeeccc
Q 036079 775 LLKHLEISRM 784 (1399)
Q Consensus 775 ~L~~L~Ls~~ 784 (1399)
--++|+..-|
T Consensus 261 IFKyL~~qA~ 270 (722)
T KOG0532|consen 261 IFKYLSTQAC 270 (722)
T ss_pred eeeeecchhc
Confidence 4566666655
No 43
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6e-07 Score=101.96 Aligned_cols=294 Identities=15% Similarity=0.098 Sum_probs=167.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
..+.+|+++++++...|...- .+..+.-+.|+|.+|+|||+.++.+....+....=..+++|++....+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~--~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPAL--RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHh--cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 349999999999999987643 233444599999999999999999998432221111278999999999999999999
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhc--CCeEEEEEcccCccChhhHhhhcccCCCCCC-CcEE--EEecCChhh-----
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNESYNYWSILSCPFEAVAP-GSKI--VVTTRNLGV----- 298 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~-~s~i--ivTtr~~~~----- 298 (1399)
.+++.... ......+..+.+.+.+. ++.++||||+++......-+.+...+..... .++| |..+-+...
T Consensus 95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99984433 55666677777777764 5889999999965322111222222222211 3443 333333222
Q ss_pred ---hhccCCCCceecCCCChhhHHHHHHHhhcCCC-CCCCChhhHHHHHHHHHHcC-CChHHHHHHHhhh--cCCC----
Q 036079 299 ---TVNMGADPAYQLKELSNDDCLCVLTQISLGAR-DFSMHQSLKEVGEKIAMKCK-GLPLAAKTLGSLL--RGKD---- 367 (1399)
Q Consensus 299 ---~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~~~l--~~~~---- 367 (1399)
....+.. .+...|-+.+|-..++..++-..- +....+..-+.+..++.+-+ ---.|+..+-.+. +.++
T Consensus 174 ~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 174 PRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred hhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCC
Confidence 2223322 378999999999999998764221 11223333444444444444 4455555543332 2211
Q ss_pred -ChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhhccccCCCcccChHHHHH--HHHHcCCccccCCccc
Q 036079 368 -DPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAYCSLFPKDYEFHEEEIIL--LWIAEGFLHQANSRRK 444 (1399)
Q Consensus 368 -~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~l~~--~w~~~g~i~~~~~~~~ 444 (1399)
+.+.-+.+.... -.....-....||.+.|..+...+.-- ..+....+-. .++.+.+-.
T Consensus 253 v~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~------- 313 (366)
T COG1474 253 VSEDHVREAQEEI----------ERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT------- 313 (366)
T ss_pred cCHHHHHHHHHHh----------hHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc-------
Confidence 111111111000 011233346778888776654443322 2233333322 233332211
Q ss_pred HHHHHHHHHHHHHhccccccc
Q 036079 445 LEDLGRDFVRELYSRSLFQQS 465 (1399)
Q Consensus 445 ~~~~~~~~~~~L~~~~l~~~~ 465 (1399)
.+..-.+++.+|...+++...
T Consensus 314 ~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 314 SQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred hHHHHHHHHHHHHhcCeEEee
Confidence 233455778888888888643
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.70 E-value=3.5e-08 Score=110.36 Aligned_cols=167 Identities=26% Similarity=0.368 Sum_probs=102.2
Q ss_pred ccccccccccccccccccCCcccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccEEE
Q 036079 1193 NTSLEEITISWLENLKILPGGLHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLE 1272 (1399)
Q Consensus 1193 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 1272 (1399)
+.+++.|++++| .++.+|. + -++|++|.+++|+.+..+|..+. ++|+.|++++|..+..+|.. |+.|+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEE
Confidence 456666677766 5666662 2 23678888888877777775442 57888888888777767653 55555
Q ss_pred ecC--CCCCcccccccccccccCcccccccccCCCC-cccCC-CCCCCccEEecCCCCCccccccCCCCCCCCCeeeccC
Q 036079 1273 IGL--CPRLICKPLFEWGLNRFTSLKRLEICEGCPD-LVSSP-RFPASLTVLRISSMPNLICLSSIGENLTSLETLDLHF 1348 (1399)
Q Consensus 1273 l~~--c~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~-l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 1348 (1399)
++. |..+..+| ++|+.|.+.++.+. ....+ .++++|+.|.+++|..+. +|..+ ..+|+.|+++.
T Consensus 119 L~~n~~~~L~~LP---------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVP---------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCc---------chHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCcEEEecc
Confidence 543 33344444 35666666432222 12222 256889999999988653 33222 26899999887
Q ss_pred CCCC-CcCCCCCCccccccccccCCchHHHHhhccCC
Q 036079 1349 CPKL-KYFPEQGLPKSLLQLIIHDCPLIEKRCRKYKR 1384 (1399)
Q Consensus 1349 c~~l-~~~~~~~l~~sL~~L~i~~c~~l~~~~~~~~~ 1384 (1399)
+... ..++...+|+++ .|++.+|..+....-+..|
T Consensus 187 n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~ 222 (426)
T PRK15386 187 EQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKN 222 (426)
T ss_pred cccccccCccccccccc-EechhhhcccCHHHhhccc
Confidence 5322 134444577888 8999999776554443333
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=2.5e-07 Score=99.35 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=96.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
.+.+.|+|++|+|||+||+++++. .......+.|+.+.... ... ..+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~----------------------~~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS----------------------PAVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh----------------------HHHHhhcc-
Confidence 357899999999999999999984 22223445676653110 000 01111121
Q ss_pred CeEEEEEcccCccC-hhhHh-hhcccCCCC-CCCcEEE-EecCC---------hhhhhccCCCCceecCCCChhhHHHHH
Q 036079 256 KKFLLVLDDVWNES-YNYWS-ILSCPFEAV-APGSKIV-VTTRN---------LGVTVNMGADPAYQLKELSNDDCLCVL 322 (1399)
Q Consensus 256 k~~LiVlDdv~~~~-~~~~~-~l~~~~~~~-~~~s~ii-vTtr~---------~~~~~~~~~~~~~~l~~l~~~~~~~l~ 322 (1399)
+.-+||+||+|... ...|+ .+...+... ..|..+| +|++. +.+...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998742 23454 232222211 2355554 45543 345555555667999999999999999
Q ss_pred HHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 323 TQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
++.+.... .. -.+++..-|++++.|..-++..+-..+
T Consensus 171 ~~~a~~~~-l~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRG-IE---LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98886432 22 226778889999998876666554444
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.1e-08 Score=102.21 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=32.3
Q ss_pred cCCCCcccEEEecCCcccccCcccc-CccccceeeccCccccccchhhhccccccEEEcCCccccccchhhh-cccCccc
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIG-NLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDM-GNLIKLH 620 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 620 (1399)
+.+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..++..+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 334446677777777777663 344 4667777777777777774 4667777777777773 555665444 3577777
Q ss_pred EEEcCCCcccccCC--cccccccccCccceEEeccC
Q 036079 621 HLRNSNVDSLEEMP--KGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 621 ~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~ 654 (1399)
+|++++|. +..+- ..+..+++|+.|++.+|...
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777776 44332 23555666666666655544
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2.5e-08 Score=118.70 Aligned_cols=108 Identities=31% Similarity=0.405 Sum_probs=95.4
Q ss_pred cCCCCcccEEEecCCcccccCccccCcc-ccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLK-HLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHH 621 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 621 (1399)
+..++.++.|++.+|.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence 4555889999999999999998888885 99999999999999998999999999999999 468889888889999999
Q ss_pred EEcCCCcccccCCcccccccccCccceEEec
Q 036079 622 LRNSNVDSLEEMPKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 622 L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 652 (1399)
|++++|. +..+|..++.+..|++|.+..|.
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCc
Confidence 9999998 88999877777778888876663
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.61 E-value=2.7e-07 Score=108.85 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=105.4
Q ss_pred CccccchhhHHH---HHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEA---IVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
.++||++..+.. +..++.. .....+.|+|++|+||||+|+.+++. .... |+.++......+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~--- 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVK--- 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHH---
Confidence 358888877655 6676643 24457888999999999999999873 2222 222222111111
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE--ecCChhhh--h
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV--TTRNLGVT--V 300 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--Ttr~~~~~--~ 300 (1399)
+..+..+..... ..+++.+|++|++|.......+.+...+. .|..++| ||.+.... .
T Consensus 76 ---------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 76 ---------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 111122222211 24678899999998876656666554443 2444444 34443211 1
Q ss_pred c-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHh
Q 036079 301 N-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGS 361 (1399)
Q Consensus 301 ~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 361 (1399)
. ......+.+.+++.++..+++.+....... ....-.+++.+.|++.|+|.+..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 112256899999999999999886532111 00122356778899999999876655443
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.2e-08 Score=110.84 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=107.6
Q ss_pred Eeecccccccccccccc---------cccCCcCcEEEeecCCCCCCCc----cccccccEEEEeecCCCC-ccchhhccC
Q 036079 917 IVNVRELTYLWWSETRL---------LQDVRSLNRLQISRCPQLLSLP----ELQCRLRFLELSYCEGLT-RLPQALLTL 982 (1399)
Q Consensus 917 l~~~~~L~~L~l~~n~l---------~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~ls~n~~~~-~~~~~~~~l 982 (1399)
...|++++.|+++.|-+ ...+|+|+.|+++.|....... ..++.|+.|.++.|.+.- .+-..+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 34566677777777644 6788999999999987432222 155789999999998752 244456678
Q ss_pred CCccEEEEccCCCcc-ccCCccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCcccc--CCC------CC
Q 036079 983 SSLTEMRIAHCTSLI-SFPEAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSF--PEV------SL 1053 (1399)
Q Consensus 983 ~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~--~~~------~~ 1053 (1399)
|+|+.|++..|+.+. .......+..|+.|+|++|+.+.. +.......++.|..|+++.|. +.++ |.. ..
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-ccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 999999998875332 222345577888899988885443 322222348888888888765 3322 222 33
Q ss_pred CCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCC
Q 036079 1054 PSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNC 1091 (1399)
Q Consensus 1054 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c 1091 (1399)
+++|++|++.. |++.+++..--...+++|+.|.+..+
T Consensus 300 f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 300 FPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 46777777777 44544433221233455565555443
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.3e-06 Score=100.96 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.......+. ..+...-..-.++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999999988642 2346789999999999999999986422111000 00000000111111
Q ss_pred Hhc-------cCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhh
Q 036079 229 NSV-------ASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVT 299 (1399)
Q Consensus 229 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~ 299 (1399)
... ........++..++.+.+... ..+++-++|+|+++......++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 100 000000111111222111111 12456699999998877666777766666555667777776553 232
Q ss_pred hcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 300 VNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 300 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
..+ +....+++.+++.++..+.+.+.+..... .-.++.+..|++.++|.|-.+
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 221 22246999999999999988876643221 122567788999999988543
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=1.5e-07 Score=105.48 Aligned_cols=140 Identities=30% Similarity=0.433 Sum_probs=102.9
Q ss_pred ccCCCCCceEeeccCCCccccCCCCCCCCCccEEEecCCcCcccCccccCCCCCccEEEecCCCCCcccccccccccccC
Q 036079 1214 LHNLHHLQEIRIEQCPNLESFPEGGLPYAKLTKLEILDCENLKALPNCMHNLTSLLCLEIGLCPRLICKPLFEWGLNRFT 1293 (1399)
Q Consensus 1214 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~l~~l~ 1293 (1399)
+..+.+++.|++++| .++++|. . .++|++|.+++|..++.+|..+. ++|+.|++++|..+..+| .
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--L-P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP---------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--L-PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP---------E 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--C-CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc---------c
Confidence 445789999999999 6889983 2 26799999999999999987663 689999999998888777 4
Q ss_pred cccccccccCCCCcccCCCCCCCccEEecCCCCCccccccCCCCCCCCCeeeccCCCCCCcCCCCCCccccccccccCC
Q 036079 1294 SLKRLEICEGCPDLVSSPRFPASLTVLRISSMPNLICLSSIGENLTSLETLDLHFCPKLKYFPEQGLPKSLLQLIIHDC 1372 (1399)
Q Consensus 1294 ~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~sL~~L~i~~c 1372 (1399)
+|+.|++.. .....+...+++|+.|.+.+++.....+....-.++|++|++++|..+. +| ..+|.+|+.|+++.+
T Consensus 113 sLe~L~L~~--n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 113 SVRSLEIKG--SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred ccceEEeCC--CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 577777743 3334455667789999986543221111000122789999999998764 45 348999999999875
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=8e-07 Score=106.06 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||.+..++.|..++... .-.+.+.++|..|+||||+|+.+.+.......+. + .....-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---~----~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---S----QPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---C----CCCcccHHHHHHh
Confidence 46999999999999998532 2345678999999999999998886332111110 0 0001011111111
Q ss_pred Hh-----ccCCCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-h
Q 036079 229 NS-----VASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-V 298 (1399)
Q Consensus 229 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~ 298 (1399)
.. +..... .....+++.+.+... ..++.-++|||+++......|..+...+.....+.++|+||.+.. +
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 00 000000 111222222222211 134556899999998887778887776665566778888777643 2
Q ss_pred hhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh-HHHHHHH
Q 036079 299 TVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP-LAAKTLG 360 (1399)
Q Consensus 299 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 360 (1399)
... .+....+++++++.++..+.+.+.+..+. .. -.++....|++.++|.. -|+..+-
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~---id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IA---FEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 12225699999999999999988764322 11 22567788999999865 4555543
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.55 E-value=9.6e-07 Score=102.69 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCH-HHHHH-
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDV-FRISK- 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~- 225 (1399)
..++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+++... ...+. ..+.++++.-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 4689999999999998853 2334678999999999999999987322 11111 2334443321100 00000
Q ss_pred --HHHHhccCCCCCCcccHHHHHHHHHHH---h--cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-
Q 036079 226 --SILNSVASDQCTDKDDLNLLQEKLKKQ---L--SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG- 297 (1399)
Q Consensus 226 --~il~~l~~~~~~~~~~~~~~~~~l~~~---l--~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~- 297 (1399)
.....++..........+.....++.. . .+.+-+||+||++.........+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000000001112222222222 1 13455899999976654444555544443445577887775432
Q ss_pred hhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 298 VTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 298 ~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
+...+ .....+++.+++.++...++.+.+.... .. -.++.++.+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-VD---YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 21211 1224588999999999999988764322 11 22567888999999986555443
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.55 E-value=7.8e-07 Score=96.60 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=102.0
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
.+..++++.+++.. ...+.+.|+|++|+|||++|+.+++.. .......++++++.-.+. ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~---~~-------- 82 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA---DP-------- 82 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh---HH--------
Confidence 34466777776532 345689999999999999999999732 222334556654322110 00
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh-h-HhhhcccCCC-CCCCcEEEEecCChh---------hhhc
Q 036079 234 DQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN-Y-WSILSCPFEA-VAPGSKIVVTTRNLG---------VTVN 301 (1399)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~-~-~~~l~~~~~~-~~~~s~iivTtr~~~---------~~~~ 301 (1399)
.+...++. .-+||+||++..... . .+.+...+.. ...+.++|+|++... +...
T Consensus 83 --------------~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 83 --------------EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred --------------HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 01111222 238999999764422 2 2333333221 123457888887532 1122
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 302 MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 302 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
+.....+++.++++++...++...+.... . .-.+++.+.|++.++|+|..+..+...+
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG-L---QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22234689999999999999887643211 1 1235677888889999998887775443
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.3e-08 Score=104.18 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=76.4
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
....+.|+.|||++|.|+.+.++..-++.+|.|++|+|+|..+-. +..|++|+.||||+| .+..+-..=.+|.+.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 444567888888888888888888778888888888888887743 788888888888884 566665555677788888
Q ss_pred EcCCCcccccCCcccccccccCccceEEec
Q 036079 623 RNSNVDSLEEMPKGFGKLTCLLTLCTFVVG 652 (1399)
Q Consensus 623 ~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 652 (1399)
.++.|. +..+ .++++|-+|..|++..|.
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccccccc
Confidence 888876 4444 345566666666554443
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.3e-06 Score=103.34 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=113.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||.+...+.+..++... .-...+.++|+.|+||||+|+.+++...... |+.. .....-..-+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 46999999999999999642 2346889999999999999999986321111 1100 0000001111111
Q ss_pred Hhcc-----CCCCCCcccHHHHHHHHHH----HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-h
Q 036079 229 NSVA-----SDQCTDKDDLNLLQEKLKK----QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-V 298 (1399)
Q Consensus 229 ~~l~-----~~~~~~~~~~~~~~~~l~~----~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~ 298 (1399)
..-. .... .....+++.+.+.. ...+++-++|+|+++..+...+..+...+.....+.++|++|.+.. +
T Consensus 83 ~g~hpDviEIDAA-s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEIDAA-SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEeccc-ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 0000 0000 01122222222211 1235677999999988776677777666655556677777776532 2
Q ss_pred hhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHH
Q 036079 299 TVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAK 357 (1399)
Q Consensus 299 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 357 (1399)
... ......+++++++.++..+.+.+.+..... ....+....|++.++|.+-.+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 211 223356999999999999999887643221 1225677889999999774443
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.7e-06 Score=98.21 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=117.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc----chhccCCceEEEEe-CCCCCHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD----RVQRHFEIKAWTCV-SEEFDVFRI 223 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 223 (1399)
.+++|-+..++.+..++... .-.+...++|+.|+||||+|+.++... ....|.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789888899999998532 345678899999999999999998632 12345555455432 12222222
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhh-hc-
Q 036079 224 SKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVT-VN- 301 (1399)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~-~~- 301 (1399)
.+++.+.+... -..+++-++|+|+++......+..+...+.....++.+|++|.+.+.. ..
T Consensus 78 ir~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 22222222111 123566788888887777778888888888777888888888765322 11
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 302 MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 302 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.+....+.+.++++++....+.+...+ . .++.+..++..++|.|..+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-----I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 122356899999999998888765311 0 1344678899999998765433
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.53 E-value=4e-06 Score=101.08 Aligned_cols=247 Identities=19% Similarity=0.150 Sum_probs=137.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|.++.++++.+|+.... .+...+.+.|+|++|+||||+|+.+++.. .|+ ++-++++...+. +....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHH
Confidence 469999999999999997643 12236789999999999999999999843 122 233344432222 2223333
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh----hhHhhhcccCCCCCCCcEEEEecCChh-hhh-cc
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY----NYWSILSCPFEAVAPGSKIVVTTRNLG-VTV-NM 302 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~----~~~~~l~~~~~~~~~~s~iivTtr~~~-~~~-~~ 302 (1399)
........ ....++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211100 0113678999999976432 224444443332 2344666664321 111 11
Q ss_pred -CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcC-CC--ChhHHHHHHhh
Q 036079 303 -GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRG-KD--DPRDWEFVLNT 378 (1399)
Q Consensus 303 -~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~--~~~~w~~~l~~ 378 (1399)
.....+++.+++.++....+.+.+..... .. .+++...|++.++|..-.+......+.. .. +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-EC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 12246899999999999998887643321 12 2567889999999976655444333332 22 2222222221
Q ss_pred hhcccccccCCchhhhhcccc-CCchhhhhhhhhccccCCCcccChHHHHHHHHHcCCccc
Q 036079 379 DIWDLQEHKCDIIPALGVSYH-FLPPQLKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQ 438 (1399)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~ 438 (1399)
.+...+++.++..-+. .-+......+.. ..++. ..+..|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1222345555554443 222233332222 12233 45678999999764
No 59
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.4e-06 Score=106.40 Aligned_cols=195 Identities=20% Similarity=0.202 Sum_probs=115.8
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||.+..++.+.+++... .-...+.++|+.|+||||+|+.+++.......... ........-..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHh
Confidence 46999999999999988642 23456689999999999999999974321111000 0000000000000
Q ss_pred H-------hccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhh
Q 036079 229 N-------SVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVT 299 (1399)
Q Consensus 229 ~-------~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~ 299 (1399)
. .+........++.+++.+.+.. ...+++-++|||+++......+..+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 0 0000000011222333322221 124677899999999988778888777776655667766666543 332
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.. ......|++++++.++..+.+.+.+.... ....++.+..|++.++|.|--+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 12225699999999999999988763321 1123567788999999988544333
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=1.8e-07 Score=91.63 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=81.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchh---ccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQ---RHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK 251 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 251 (1399)
+.+++.|+|.+|+|||++++++.+..... ..-..++|+.+....+...+...++..++.... ...+.+++.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHH
Confidence 34789999999999999999999743111 013456799998888999999999999988765 33456666677777
Q ss_pred HhcCC-eEEEEEcccCcc-ChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 252 QLSGK-KFLLVLDDVWNE-SYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 252 ~l~~k-~~LiVlDdv~~~-~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
.+... ..+||+|+++.. +...++.+..... ..+.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77654 469999999776 5555555544333 556677777664
No 61
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.52 E-value=7.6e-08 Score=96.25 Aligned_cols=117 Identities=27% Similarity=0.332 Sum_probs=54.3
Q ss_pred CCCcchhhHHhhhcC-CCCcccEEEecCCcccccCccccCccccceeeccCccccccchhh-hccccccEEEcCCccccc
Q 036079 530 YEGNYLAWSVLQMLL-NLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESI-NSLYNLHTILLENCHRLK 607 (1399)
Q Consensus 530 ~~~~~~~~~~~~~~~-~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~ 607 (1399)
+.+|.++. .+.+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|+|+.+++.+ ..+++|++|++++| .+.
T Consensus 26 L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~ 101 (175)
T PF14580_consen 26 LRGNQIST--IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KIS 101 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----
T ss_pred cccccccc--ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCC
Confidence 44555432 23455 5789999999999999985 5889999999999999999997766 46999999999995 454
Q ss_pred cch--hhhcccCcccEEEcCCCcccccCCc----ccccccccCccceEEe
Q 036079 608 KLC--KDMGNLIKLHHLRNSNVDSLEEMPK----GFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 608 ~lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~l~~~ 651 (1399)
.+- ..+..+++|++|++.+|. +...+. -+..+++|+.|+...+
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 442 347889999999999998 444443 2667888888876544
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.50 E-value=2.4e-07 Score=97.27 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=34.1
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ 203 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 203 (1399)
.||||+++++++...+... .....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999521 34566899999999999999999998844333
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5.7e-07 Score=106.88 Aligned_cols=198 Identities=19% Similarity=0.178 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|-+...+.+..++... .-...+.++|++|+||||+|+.+++.....+.+...+|.+.+.. .+......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 35899999999998888643 23466799999999999999999874322222222223221100 0000000000
Q ss_pred HhccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhhhcc-CCC
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVTVNM-GAD 305 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~~~~-~~~ 305 (1399)
..+........++..++...+.. -..+++-++|+|+++......+..+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 01111101011222222222221 12356679999999887767777777777655556666655543 3332222 223
Q ss_pred CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 306 PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 306 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
..+++.+++.++..+.+.+.+..... . ..++.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi-~---i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR-E---AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 46999999999999999887643321 1 12567889999999988544
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.49 E-value=1.4e-06 Score=92.22 Aligned_cols=176 Identities=16% Similarity=0.226 Sum_probs=106.9
Q ss_pred ccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 146 VNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 146 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
+.+.++||-+..+..+++ .++..-+.+||++|+||||||+.++....... ..||..+....-..-.+
T Consensus 141 vGQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 141 VGQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVR 207 (554)
T ss_pred cchhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHH
Confidence 345556666555444433 24567788999999999999999997543332 45666665544444444
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE--ecCChhhh---h
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV--TTRNLGVT---V 300 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--Ttr~~~~~---~ 300 (1399)
.|.++-.. ...+..+|.++++|.|+.....+.+. ++|...+|.-++| ||.++... .
T Consensus 208 ~ife~aq~----------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 208 DIFEQAQN----------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHHH----------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHH
Confidence 44433211 11245789999999998765433333 3556677877776 66665442 1
Q ss_pred ccCCCCceecCCCChhhHHHHHHHhhc---CCCC---CCCCh---hhHHHHHHHHHHcCCCh
Q 036079 301 NMGADPAYQLKELSNDDCLCVLTQISL---GARD---FSMHQ---SLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 301 ~~~~~~~~~l~~l~~~~~~~l~~~~~~---~~~~---~~~~~---~~~~~~~~i~~~~~g~P 353 (1399)
-+....++.+++|..++...++.+..- ..+. .-+.+ -...+.+-++..|+|-.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 223345789999999999999887432 1111 11111 12345566777788864
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.48 E-value=1.1e-05 Score=99.30 Aligned_cols=204 Identities=21% Similarity=0.219 Sum_probs=121.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC---CceEEEEeCCC---CCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---EIKAWTCVSEE---FDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 222 (1399)
+.++|++..+.++.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3589999999988877732 244579999999999999999998754332222 12335544321 12222
Q ss_pred HHHHH---------------HHhccCCCC---------------CCcccH-HHHHHHHHHHhcCCeEEEEEcccCccChh
Q 036079 223 ISKSI---------------LNSVASDQC---------------TDKDDL-NLLQEKLKKQLSGKKFLLVLDDVWNESYN 271 (1399)
Q Consensus 223 ~~~~i---------------l~~l~~~~~---------------~~~~~~-~~~~~~l~~~l~~k~~LiVlDdv~~~~~~ 271 (1399)
+...+ +...+.... ++...+ ...+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111111100 011111 23567788888889999998888777666
Q ss_pred hHhhhcccCCCCCCCcEEEE--ecCChhh-hhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHH
Q 036079 272 YWSILSCPFEAVAPGSKIVV--TTRNLGV-TVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAM 347 (1399)
Q Consensus 272 ~~~~l~~~~~~~~~~s~iiv--Ttr~~~~-~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (1399)
.|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.++++.+.+.... ... .+++.+.|++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~l---s~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHL---AAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHH
Confidence 78887766665555555555 5664331 1111 1123578899999999999998764321 111 2455566666
Q ss_pred HcCCChHHHHHHHhh
Q 036079 348 KCKGLPLAAKTLGSL 362 (1399)
Q Consensus 348 ~~~g~Plal~~~~~~ 362 (1399)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 665556677666544
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.3e-06 Score=100.96 Aligned_cols=195 Identities=16% Similarity=0.176 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc--CCceEEEEeCCCCCHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--FEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
.++||-+..++.+.+++... .-...+.++|+.|+||||+|+.+++....... -.... +........-+.
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 46999999999999999643 23467789999999999999999863221000 00000 000000011111
Q ss_pred HHH-------hccCCCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 227 ILN-------SVASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 227 il~-------~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
|.. .+... .....+++.+.+... ..++.-++|+|+++......+..+...+.....+.++|++|.+
T Consensus 87 I~aG~hpDviEIdAa---s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 87 IDAGRFVDYIEMDAA---SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHcCCCCcceEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 110 01000 111223322222221 2456779999999988877788877777655556665555544
Q ss_pred -hhhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 296 -LGVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 296 -~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
..+...+ +....+.+.+++.++..+.+.+.+.... .. ...+....|++.++|.|.-...+
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4333221 2224699999999999999887764322 11 12456688999999998644433
No 67
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.1e-08 Score=105.98 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=46.1
Q ss_pred CCCCCCCceEEEeecCCCCCCcccCcCCCcceeEEEeeCCCCCCCC--CCCCCCCccceeeecccccceecCccccCCCC
Q 036079 722 LEPHQKLEKLTITGYGGTKFPNWLGESSFLKLLFLRFEGCGKCTSL--PSVGQLPLLKHLEISRMDRVKSVGPEFYGNSC 799 (1399)
Q Consensus 722 l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l--~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~ 799 (1399)
+..+|+|+.|++.+|..... .......+..|+.|+|++|++...- +..+.+|.|..|.++.+.......++......
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred HHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh
Confidence 33455666666666531111 0001122456677777776654433 45677777777777766433322222211111
Q ss_pred CCCCCCccEEeccccc
Q 036079 800 SMPFPSLETLSFFHMR 815 (1399)
Q Consensus 800 ~~~~~~L~~L~L~~~~ 815 (1399)
...||+|++|++..++
T Consensus 297 t~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 297 THTFPKLEYLNISENN 312 (505)
T ss_pred hcccccceeeecccCc
Confidence 2336666666666644
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.2e-09 Score=105.84 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=111.4
Q ss_pred ccccEEEEeecCCCC-ccchhhccCCCccEEEEccCCCccccC-CccCCCcccEEEccCCCccccCccccccCccCCcce
Q 036079 959 CRLRFLELSYCEGLT-RLPQALLTLSSLTEMRIAHCTSLISFP-EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQS 1036 (1399)
Q Consensus 959 ~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~ 1036 (1399)
+.||+||||+..+.. .+...+..|..|+.|.+.++..-..+. ..+...+|+.|+++.|+.++.........+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457888888766543 355567778888888888854433332 355678899999999988877665555556889999
Q ss_pred EEecCCCCccccCC---CCCCCCCcEEEecCCCC-CcccchhhhhcCCCCccEEeecCCCCcccc--ccccccCccceee
Q 036079 1037 LKIRYCKSLVSFPE---VSLPSRLRTIEIEGCYA-LKCLPEAWMENSSTSLESLNIYNCNSLTHI--ARIQLAPSLKRLI 1110 (1399)
Q Consensus 1037 L~ls~~~~l~~~~~---~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~--~~~~~~~~L~~L~ 1110 (1399)
|++++|...+..-. ...-++|+.|+++||.. +..-..+.+...+|+|.+|||++|..++.- ..+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999875543311 12346889999998732 333334445578999999999999888762 2356788899999
Q ss_pred eccccCc
Q 036079 1111 INSCHNL 1117 (1399)
Q Consensus 1111 l~~c~~l 1117 (1399)
++.|..+
T Consensus 345 lsRCY~i 351 (419)
T KOG2120|consen 345 LSRCYDI 351 (419)
T ss_pred hhhhcCC
Confidence 9888755
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7.4e-07 Score=102.61 Aligned_cols=195 Identities=16% Similarity=0.114 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||-+..+..+..++... .-...+.++|+.|+||||+|+.+++......... ...+.......++.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 46899999999999988642 2235689999999999999999987422111000 001111111111111100
Q ss_pred Hh---ccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhhhcc-
Q 036079 229 NS---VASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVTVNM- 302 (1399)
Q Consensus 229 ~~---l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~~~~- 302 (1399)
.. +........++..++.+.+... ..++.-++|+|+++......+..+...+........+|++|.. ..+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 1100010122233333333221 2456779999999988888888887776554455555545543 3332222
Q ss_pred CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHH
Q 036079 303 GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
.....|.+.+++.++..+.+.+.+.... . .-.+++...|++.++|.+--
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i---~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIEN-V---QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCChHHH
Confidence 2224699999999999999888764322 1 12356778999999998743
No 70
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=6e-08 Score=99.47 Aligned_cols=125 Identities=25% Similarity=0.335 Sum_probs=104.6
Q ss_pred cccCCCCcchhhHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccc
Q 036079 526 KLSNYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHR 605 (1399)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~ 605 (1399)
...++++|.++ .+.++..-.+.+|+|++++|.|..+-. +..|++|+.||||+|.++++...=.+|-|.++|.|++ |.
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~ 363 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NK 363 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hh
Confidence 34456677663 455667778999999999999998855 8899999999999999999987778999999999999 46
Q ss_pred cccchhhhcccCcccEEEcCCCcccccCC--cccccccccCccceEEeccCC
Q 036079 606 LKKLCKDMGNLIKLHHLRNSNVDSLEEMP--KGFGKLTCLLTLCTFVVGKDG 655 (1399)
Q Consensus 606 l~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~~ 655 (1399)
+..+ +++++|.+|..||+++|+ +..+. .+||+|+.|+++.+.+|....
T Consensus 364 iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 364 IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7776 569999999999999998 66655 469999999999998776643
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.7e-07 Score=75.52 Aligned_cols=58 Identities=28% Similarity=0.512 Sum_probs=43.6
Q ss_pred CcccEEEecCCcccccC-ccccCccccceeeccCccccccc-hhhhccccccEEEcCCcc
Q 036079 547 PRLRVFSLHGYCVSKLP-NEIGNLKHLRFLNLSGTEIQILP-ESINSLYNLHTILLENCH 604 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~ 604 (1399)
++|++|++++|.++.+| ..|.++++|++|++++|.|+.+| ..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46778888888888775 56777888888888888887664 467777778888777753
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.43 E-value=3.2e-06 Score=96.26 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=105.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 227 (1399)
.+++|.++.++.+.+++.. +..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 3588998888888887743 2334577999999999999999987321 11222 11112222221111 11222
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhcc-CCC
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVNM-GAD 305 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~~-~~~ 305 (1399)
++.+..... ..-.++.-++|+|+++.........+...+...+..+++|+++... .+...+ ...
T Consensus 85 i~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 111110000 0002456799999998876655566655554444567777766542 221111 112
Q ss_pred CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHH
Q 036079 306 PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 306 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
..+++.++++++....+...+.... ... .++....|++.++|..-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~eg-i~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEK-VPY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHH
Confidence 4689999999999999988774322 111 246778899999997533
No 73
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.41 E-value=4.2e-07 Score=99.72 Aligned_cols=291 Identities=16% Similarity=0.175 Sum_probs=179.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCc-eEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..|.+.++|.|||||||++-++.. .+..|.. +.++....-.+...+.-.....++....+. +.....+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g----~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG----DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc----hHHHHHHHHHH
Confidence 457899999999999999988886 4566754 455666666677777777777676654311 22334556667
Q ss_pred cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhccCCCCceecCCCChh-hHHHHHHHhhcCCC-C
Q 036079 254 SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVNMGADPAYQLKELSND-DCLCVLTQISLGAR-D 331 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~~-~ 331 (1399)
.++|.++|+||....- +.-..+...+......-.|+.|+|..... .......+.+++.. ++.++|...+.... .
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7899999999984321 11122233333444556788888865432 23345677777764 78888876653221 2
Q ss_pred CCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhh-------cccccccCCchhhhhccccCCchh
Q 036079 332 FSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTDI-------WDLQEHKCDIIPALGVSYHFLPPQ 404 (1399)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~-------~~~~~~~~~~~~~l~~sy~~L~~~ 404 (1399)
..........+.+|.++.+|.|++|..+++..+.-. ...-...++... ...........+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 222334467789999999999999999999887652 222222222111 111112235678999999999999
Q ss_pred hhhhhhhccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHHHHHHHHhcccccccC-CCCCeEEEcchhHHHHH
Q 036079 405 LKQCFAYCSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVRELYSRSLFQQSS-KDASLFVMHDLINDLTQ 483 (1399)
Q Consensus 405 ~k~~f~~~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-~~~~~~~~H~lv~~~~~ 483 (1399)
.+-.|.-++.|...+... ...|.+.|-... ...-..-..+..+++.+++.... .+...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998887654 334444432210 01122334456677888775433 12234555555555555
Q ss_pred HHh
Q 036079 484 WAA 486 (1399)
Q Consensus 484 ~~~ 486 (1399)
.+.
T Consensus 312 aeL 314 (414)
T COG3903 312 AEL 314 (414)
T ss_pred HHH
Confidence 433
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5e-06 Score=98.86 Aligned_cols=186 Identities=22% Similarity=0.188 Sum_probs=114.8
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh-------------------ccCCce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHFEIK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~f~~~ 209 (1399)
.+++|-+..++.+..++... .....+.++|+.|+||||+|+.+++..... +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 36899999999999988542 234567899999999999999998622110 011222
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcE
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSK 288 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 288 (1399)
++++......+ ++.+++.+.+... ..+++-++|+|+++......++.+...+......+.
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22222111111 1222233332211 235677999999988777777777777766555666
Q ss_pred EEE-ecCChhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh-HHHHHHHhh
Q 036079 289 IVV-TTRNLGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP-LAAKTLGSL 362 (1399)
Q Consensus 289 iiv-Ttr~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~ 362 (1399)
+|+ ||....+... ......+++.+++.++..+.+.+.+.... . ...++....|++.++|.+ -|+..+-.+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i---~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I---NSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 665 4443333322 22235699999999999888887653321 1 123566788999999966 455555433
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.2e-06 Score=97.95 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc-------------------CCce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-------------------FEIK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------f~~~ 209 (1399)
.++||.+.....+...+... .-.+.+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46999988888888877532 23356889999999999999999863211100 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcE
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSK 288 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 288 (1399)
..++++..... ++..++.+.... ...+++-++|+|+++.......+.+...+........
T Consensus 89 ~el~aa~~~gi-------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGI-------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCH-------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 12222111111 111111111111 1235677999999977655556666655554444455
Q ss_pred EEEecCC-hhhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC-ChHHHHHHHhhh
Q 036079 289 IVVTTRN-LGVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG-LPLAAKTLGSLL 363 (1399)
Q Consensus 289 iivTtr~-~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~l 363 (1399)
+|++|.+ ..+...+ .....+++.+++.++....+.+.+.... .. -.+++...|+++++| .+.|+..+..+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IE---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444433 3332222 2224689999999999999888764322 11 225677889988866 467777776543
No 76
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=3.4e-07 Score=113.52 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=88.0
Q ss_pred cccEEEecCCccc-ccCccccCccccceeeccCcccc-ccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcC
Q 036079 548 RLRVFSLHGYCVS-KLPNEIGNLKHLRFLNLSGTEIQ-ILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNS 625 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 625 (1399)
.++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 56889999999999999999998 889999999999999999988778899999999999999999
Q ss_pred CCcccccCCcccccc-cccCccceEEe
Q 036079 626 NVDSLEEMPKGFGKL-TCLLTLCTFVV 651 (1399)
Q Consensus 626 ~n~~~~~lp~~~~~L-~~L~~L~l~~~ 651 (1399)
+|.+...+|..++.+ .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 999778899877653 34455554444
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=9.1e-06 Score=96.15 Aligned_cols=195 Identities=22% Similarity=0.223 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCc-eEEEEeCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 227 (1399)
.+++|-+..+..+...+... .-.+.+.++|+.|+||||+|+.+++.......... ..+..+... ..-..+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 35899999999888877532 23467899999999999999999864321111000 000000000 000111
Q ss_pred HH-------hccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE-ecCChhh
Q 036079 228 LN-------SVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV-TTRNLGV 298 (1399)
Q Consensus 228 l~-------~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv-Ttr~~~~ 298 (1399)
.. .+........++++++.+.... -..+++-++|+|+++......|..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 10 0111111011222222222211 1235777999999998777778888777765556666655 4444444
Q ss_pred hhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 299 TVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 299 ~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
...+ .....+++.+++.++....+.+.+..... .-.++....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3322 22246899999999999999988743321 112466788999999977443
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=6.5e-06 Score=94.91 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=105.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe--CCCCCHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV--SEEFDVFRISKS 226 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 226 (1399)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 45899999999999998532 334579999999999999999987321 11121 112222 1111111 1111
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhcc-CC
Q 036079 227 ILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVNM-GA 304 (1399)
Q Consensus 227 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~~-~~ 304 (1399)
.+..+....+ .....+-+||+|+++......+..+...+......+++|+++... .+.... ..
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111110000 011345689999997665545555555554444556777766432 111111 11
Q ss_pred CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHH
Q 036079 305 DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAK 357 (1399)
Q Consensus 305 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 357 (1399)
...+++.+++.++....+...+.... .. -.++.+..+++.++|.+--+.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~-~~---i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEG-IE---ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHH
Confidence 23589999999999888888764322 11 225678889999999876543
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.36 E-value=1.5e-05 Score=81.29 Aligned_cols=182 Identities=20% Similarity=0.214 Sum_probs=95.4
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
-.+|||.+.-++.+.-++..... .++...-+.+||++|+||||||.-+++. ....|. +.+... ..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~-------- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE-------- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC-----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh--------
Confidence 35799999988887666543211 3456678899999999999999999983 333331 222211 00
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCC--------CC-----------CCcE
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEA--------VA-----------PGSK 288 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~--------~~-----------~~s~ 288 (1399)
.. .++...+.. + +++.++++|+++.......+.+...+.+ .+ +=+-
T Consensus 88 ----------k~---~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 ----------KA---GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ----------SC---HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ----------hH---HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11 112222211 1 2345777788877554433333222111 11 1223
Q ss_pred EEEecCChhhhhccCCC-C-ceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 289 IVVTTRNLGVTVNMGAD-P-AYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 289 iivTtr~~~~~~~~~~~-~-~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
|=-|||...+....... . ..+++..+.+|-.++..+.+..- .-+-.++.+.+|++++.|-|--..-+-+.+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44588865544433322 2 35799999999999998876321 123347889999999999996555444444
No 80
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=2.1e-06 Score=86.48 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=71.9
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhc
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSV 231 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 231 (1399)
+||+..++.+...+.. ...+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 4788889999888843 2446899999999999999999997432 222345666654433322211111000
Q ss_pred cCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhh---HhhhcccCCCC---CCCcEEEEecCChh
Q 036079 232 ASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNY---WSILSCPFEAV---APGSKIVVTTRNLG 297 (1399)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~---~~~l~~~~~~~---~~~s~iivTtr~~~ 297 (1399)
............++.++|+||++...... +......+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122234577899999998542222 22222222221 35778888888643
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=5.4e-06 Score=100.08 Aligned_cols=195 Identities=19% Similarity=0.189 Sum_probs=115.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||-+..++.+...+... .-...+.++|+.|+||||+|+.+++.......+. ......-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 46999999999999988542 2235578999999999999999986432111000 00111111111111
Q ss_pred Hh-------ccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhh
Q 036079 229 NS-------VASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVT 299 (1399)
Q Consensus 229 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~ 299 (1399)
.. +........++..++.+.+.. -..+++-++|+|+++......+..+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 000000011222333333221 134677799999999888777888777666555666666655553 332
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.. .+....+.+.+++.++..+.+.+...... . ...++....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-I---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 22235699999999999999987653221 1 122566788999999987644443
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=5.4e-06 Score=98.39 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|++..++.+..++... ...+.+.++|+.|+||||+|+.+++.... .-|.... ........+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCCC-CCcccHHHHHHH
Confidence 46899999999999988542 23467889999999999999999863211 1121110 111111111111
Q ss_pred Hhc-------cCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhh
Q 036079 229 NSV-------ASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVT 299 (1399)
Q Consensus 229 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~ 299 (1399)
... .+......++.+++.+.+... ..+++-++|+|+++......+..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110 000000111122222222211 1234447999999887666677776666544455666555543 3332
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHHHh
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTLGS 361 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 361 (1399)
.. ......+++.+++.++....+...+..... . -.++.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~---Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-K---IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 222356999999999999888886633221 1 124667889999999664 4444443
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=6.2e-06 Score=98.83 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH-H
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS-I 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-i 227 (1399)
.++||.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++........ -+..+.....-..+... .
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcccHHHHHHhccCc
Confidence 46999999999999998642 234678999999999999999998632111100 00000000000000000 0
Q ss_pred HHhccCCCCCCcccHHHHHHHHHH----HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhc-
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKK----QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVN- 301 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~----~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~- 301 (1399)
..-+..... .....+.+.+.+.. -..+++-++|+|+++.........+...+......+++|++|.+. .+...
T Consensus 88 ~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 88 VDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred cceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 000000000 11122222222211 123566799999998776555666666655444566777766543 22211
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHH
Q 036079 302 MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKT 358 (1399)
Q Consensus 302 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 358 (1399)
.+....+++.+++.++....+.+.+-... . .-.++....|++.++|.+.-+..
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i---~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSEK-I---AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHHhCCCHHHHHH
Confidence 12224588999999999999988764332 1 12256778999999998754433
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=9.1e-06 Score=98.04 Aligned_cols=194 Identities=17% Similarity=0.203 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC--CceEEEEeCCCCCHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 226 (1399)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+++........ ....+ ...+.-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 46899888889999988643 234677899999999999999996532111000 00000 00011111111
Q ss_pred HHH-------hccCCCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 227 ILN-------SVASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 227 il~-------~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
|.. .+... .....+++.+.+... ..++.-++|+|+++......+..+...+.......++|++|.+
T Consensus 87 i~~g~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 87 IDSGRFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHcCCCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 100 00000 112222332222211 1245568999999998877888877777665566666655543
Q ss_pred -hhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHH
Q 036079 296 -LGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKT 358 (1399)
Q Consensus 296 -~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 358 (1399)
..+... ......+++++++.++..+.+.+.+.... .. ...+....|++.++|.+--+..
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~---ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VP---AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 333211 22235699999999999999988764322 11 1256778899999997754443
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.1e-05 Score=94.55 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch-------------------hccCCce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-------------------QRHFEIK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-------------------~~~f~~~ 209 (1399)
.++||-+..++.+..++... .-.+.+.++|+.|+||||+|+.++..... .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46899999888888888532 23457899999999999999998752100 0111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcE
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSK 288 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 288 (1399)
+.++.+....+.+ ..++.+.... -..+++-++|+|+++.........+...+......++
T Consensus 88 ~eidaas~~~vdd-------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 88 IEIDAASNTSVDD-------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEecccCCCHHH-------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 3333332222222 1122111111 0235667899999988776677777777766566777
Q ss_pred EEEecCC-hhhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 289 IVVTTRN-LGVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 289 iivTtr~-~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
+|++|.. ..+...+ .....+++.+++.++..+.+.+.+..... .-.++.+..|++.++|.+-.+
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 6666543 3333222 22356899999999999999887743321 122567788999999987543
No 86
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=1.6e-05 Score=88.13 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=132.1
Q ss_pred cCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
.++.++||+.++..+.+++...- .....+-+-|.|-+|.|||.+...++.+......=..++++++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 46679999999999999997542 3456678899999999999999999986433322235688888776777888888
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHHHhcC--CeEEEEEcccCccChhhHhhhcccCCCC-CCCcEEEEecCCh-------
Q 036079 227 ILNSVASDQCTDKDDLNLLQEKLKKQLSG--KKFLLVLDDVWNESYNYWSILSCPFEAV-APGSKIVVTTRNL------- 296 (1399)
Q Consensus 227 il~~l~~~~~~~~~~~~~~~~~l~~~l~~--k~~LiVlDdv~~~~~~~~~~l~~~~~~~-~~~s~iivTtr~~------- 296 (1399)
|...+.......+.+ .+....+.+...+ +.+|+|+|.++......-+.+...|.|. -+++|+|+.---.
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888773221111222 3444555555543 3699999998654322333344444433 2455655432211
Q ss_pred ---hhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCC-CCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 297 ---GVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDF-SMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 297 ---~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.+... -.....+..+|.+.++..++|..+.-..... ..+...+-.|++++.-.|.+--|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 1123468899999999999999887433321 1222344445555555555666666655544
No 87
>PRK08727 hypothetical protein; Validated
Probab=98.32 E-value=7.3e-06 Score=88.25 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=89.3
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
..+.|+|..|+|||.||+++++.. ......+.|+++.+ ....+ .+.+..+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~------------------~~~~~~l--~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRL------------------RDALEAL--EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhH------------------HHHHHHH--hc
Confidence 469999999999999999998742 22333556665322 11100 0111111 23
Q ss_pred eEEEEEcccCccCh-hhHh-hhcccCCC-CCCCcEEEEecCCh---------hhhhccCCCCceecCCCChhhHHHHHHH
Q 036079 257 KFLLVLDDVWNESY-NYWS-ILSCPFEA-VAPGSKIVVTTRNL---------GVTVNMGADPAYQLKELSNDDCLCVLTQ 324 (1399)
Q Consensus 257 ~~LiVlDdv~~~~~-~~~~-~l~~~~~~-~~~~s~iivTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 324 (1399)
.-+||+||++.... ..|. .+...+.. ...|..||+|++.. ++..++.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 35899999964321 1232 22222211 12466799999852 2223333445789999999999999998
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 325 ISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
++... ... -.+++...|+++++|-.-++
T Consensus 174 ~a~~~-~l~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRR-GLA---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHc-CCC---CCHHHHHHHHHhCCCCHHHH
Confidence 76432 222 22577788999998866554
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.4e-05 Score=91.27 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=114.0
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceE----EEEeCCCCCHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKA----WTCVSEEFDVFRI 223 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~----wv~~~~~~~~~~~ 223 (1399)
..+++|.+...+.+.+.+... .-...+.++|+.|+||+|+|..++...--........ -.+.. .......
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~ 91 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV 91 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence 457999999999999988643 2345789999999999999988875321111000000 00000 0000011
Q ss_pred HHHHHHhc-------cCCCCC------CcccHHHHHHHHHHHh-----cCCeEEEEEcccCccChhhHhhhcccCCCCCC
Q 036079 224 SKSILNSV-------ASDQCT------DKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNESYNYWSILSCPFEAVAP 285 (1399)
Q Consensus 224 ~~~il~~l-------~~~~~~------~~~~~~~~~~~l~~~l-----~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~ 285 (1399)
-+.+...- .....+ ..-.++++. .+.+++ .+++.++|+|+++..+......+...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111100 000000 111233322 233333 25677999999998887777777766665555
Q ss_pred CcEEEEecCChh-hhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 286 GSKIVVTTRNLG-VTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 286 ~s~iivTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
++.+|++|.... +... ......+.+.+++.++..+++.+..... . ++....+++.++|.|.....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 666777776543 2211 2223579999999999999998764211 1 2223678999999998665553
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=6.7e-07 Score=110.97 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=93.3
Q ss_pred CCCCcchhhHHhhhcCCCCcccEEEecCCccc-ccCccccCccccceeeccCcccc-ccchhhhccccccEEEcCCcccc
Q 036079 529 NYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVS-KLPNEIGNLKHLRFLNLSGTEIQ-ILPESINSLYNLHTILLENCHRL 606 (1399)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l 606 (1399)
.+..|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++. .+|+.+++|++|++|+|++|...
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 35667788889999999999999999999998 77999999999999999999999 88999999999999999999888
Q ss_pred ccchhhhccc-CcccEEEcCCCcccccCC
Q 036079 607 KKLCKDMGNL-IKLHHLRNSNVDSLEEMP 634 (1399)
Q Consensus 607 ~~lp~~i~~L-~~L~~L~l~~n~~~~~lp 634 (1399)
+.+|..++.+ .++..+++.+|..+...|
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccCChHHhhccccCceEEecCCccccCCC
Confidence 8999998764 578899999887444333
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.1e-06 Score=97.50 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc-------------------cCCce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFEIK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~ 209 (1399)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+++...... .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 46999999999999999643 2345678999999999999999986321111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcE
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSK 288 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 288 (1399)
+.++......+. +..++.+.+.. -..++.-++|+|+++.........+...+......++
T Consensus 91 ~eidaas~~~v~-------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 91 FEVDAASRTKVE-------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEEcccccCCHH-------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 222222221111 12222221111 1235667899999988777777777776665556677
Q ss_pred EEEecCCh-hhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHH
Q 036079 289 IVVTTRNL-GVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKT 358 (1399)
Q Consensus 289 iivTtr~~-~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 358 (1399)
+|++|.+. .+...+ .....+++.+++.++....+.+.+.... .. -.++....|++.++|.+--+..
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i~---~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-VE---FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCcHHHHHH
Confidence 76665443 222111 1224588999999998887776653322 11 1245678899999998754433
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.31 E-value=1.5e-05 Score=93.35 Aligned_cols=183 Identities=18% Similarity=0.168 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh--c------------------cCCc
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ--R------------------HFEI 208 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~------------------~f~~ 208 (1399)
.+++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.++...... . +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 35899999999999988542 234678899999999999999887532111 0 111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCc
Q 036079 209 KAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGS 287 (1399)
Q Consensus 209 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s 287 (1399)
.++++...... .++..++.+.+... ..+++-++|+|+++.........+...+......+
T Consensus 88 ~~~~~~~~~~~-------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 88 VIEIDAASNNG-------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred EEEeeccccCC-------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 12222111111 11122222222111 22455689999997765555666666665445566
Q ss_pred EEEEecCChh-hhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 288 KIVVTTRNLG-VTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 288 ~iivTtr~~~-~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
.+|++|.+.. +...+ .....+++.+++.++..+.+...+.... .. -.++.+..+++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-IK---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 7677765543 22211 2224688999999999999888764322 11 125778889999999986665544
No 92
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.7e-05 Score=90.04 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=115.9
Q ss_pred cCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc--cCCceEEEEeCCCCCHHHHH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--HFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~ 224 (1399)
....++|-++..+.+...+... .....+.|+|+.|+||||+|+.++...-... .+.... ...........
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHH
Confidence 4557999999999999999642 3456799999999999999998886321110 011110 01111111222
Q ss_pred HHHHHh-------ccCCC-C-----CCcccHHHHHHHHHHHh-----cCCeEEEEEcccCccChhhHhhhcccCCCCCCC
Q 036079 225 KSILNS-------VASDQ-C-----TDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPG 286 (1399)
Q Consensus 225 ~~il~~-------l~~~~-~-----~~~~~~~~~~~~l~~~l-----~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~ 286 (1399)
+.+... +..+. . ...-..+++. .+.+++ .+++-++|+|+++.........+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333221 11100 0 0111233332 233333 356779999999988777777766666544445
Q ss_pred cEEE-EecCChhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 287 SKIV-VTTRNLGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 287 s~ii-vTtr~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
..+| +|++...+... .+....+++.+++.++..+++.+.... .. ..++.+..|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 44443322211 122247999999999999999874321 11 124557789999999998665543
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=1e-05 Score=87.19 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=93.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
.+.+.|+|++|+|||+||+.+++.. ...-..+.|+.+..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~~---- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW---------------------FVPEVLEGMEQ---- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh---------------------hhHHHHHHhhh----
Confidence 3578999999999999999998732 22223455665532100 00111111111
Q ss_pred CeEEEEEcccCccCh-hhHhh-hcccCCCC-CCC-cEEEEecCCh---------hhhhccCCCCceecCCCChhhHHHHH
Q 036079 256 KKFLLVLDDVWNESY-NYWSI-LSCPFEAV-APG-SKIVVTTRNL---------GVTVNMGADPAYQLKELSNDDCLCVL 322 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~-~~~~~-l~~~~~~~-~~~-s~iivTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l~ 322 (1399)
--++++||++.... ..|+. +...+... ..| .++|+||+.+ ++..++....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 23789999965321 23432 22222111 123 4799999754 33344555568999999999999999
Q ss_pred HHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 323 TQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.+++... ... -.+++..-|++++.|..-++..+-..+
T Consensus 177 ~~~a~~~-~~~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLR-GFE---LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHc-CCC---CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8866432 222 236788889999998776665554433
No 94
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.2e-06 Score=84.54 Aligned_cols=119 Identities=22% Similarity=0.200 Sum_probs=75.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
+++.|.|+.|+||||++++++.+.. .-..++|++.......... ..+ ..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999997432 2345667665544221100 000 223333333347
Q ss_pred eEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhhc-----c-CCCCceecCCCChhhH
Q 036079 257 KFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVN-----M-GADPAYQLKELSNDDC 318 (1399)
Q Consensus 257 ~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~-----~-~~~~~~~l~~l~~~~~ 318 (1399)
+.+|+||++... ..|......+.......+|++|+........ . +....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999665 4566666666555567899999997655422 1 1113578999987763
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=1.6e-05 Score=83.01 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCC
Q 036079 255 GKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDF 332 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 332 (1399)
+.+-++|+||++......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 566789999998877666777777776655667777777653 221111 12246999999999999998876 1 1
Q ss_pred CCChhhHHHHHHHHHHcCCChHH
Q 036079 333 SMHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
.++.+..|++.++|.|..
T Consensus 170 -----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -----CHHHHHHHHHHcCCCccc
Confidence 146788999999998853
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.28 E-value=8.9e-06 Score=88.02 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=90.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
..+.+.|+|.+|+|||+||+.+++... ... ..+.++++.... .. + ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~-------------------~~~- 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F-------------------DFD- 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H-------------------hhc-
Confidence 346789999999999999999997421 122 133444432211 00 0 011
Q ss_pred CCeEEEEEcccCccChhhHhhhcccCCCC-CCCc-EEEEecCChhhhh--------ccCCCCceecCCCChhhHHHHHHH
Q 036079 255 GKKFLLVLDDVWNESYNYWSILSCPFEAV-APGS-KIVVTTRNLGVTV--------NMGADPAYQLKELSNDDCLCVLTQ 324 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-~~~s-~iivTtr~~~~~~--------~~~~~~~~~l~~l~~~~~~~l~~~ 324 (1399)
...-+||+||++.......+.+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 23347889999764433333343333221 2333 4677776533221 222235689999999887777776
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 325 ISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.+.. ... .-.+++...+++.+.|++..+..+...+
T Consensus 169 ~~~~-~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAE-RGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHH-cCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5422 111 2235778889999999999988877665
No 97
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=6.7e-06 Score=101.69 Aligned_cols=172 Identities=22% Similarity=0.240 Sum_probs=98.4
Q ss_pred CccccchhhHH---HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKE---AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
++|+|.+..+. .+...+.. +....+.|+|++|+||||+|+.+++. ....|. .+++.. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 45899888774 45555532 34556789999999999999999973 333331 111110 000
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHh--cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE--ecCChh--hh
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQL--SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV--TTRNLG--VT 299 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--Ttr~~~--~~ 299 (1399)
.+..+......+.+ .+++.++|+||++......++.+...+ ..|..++| ||.++. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 11111112222222 246789999999876655666665433 23555555 344432 11
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHcCCChH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGAR---DFSMHQSLKEVGEKIAMKCKGLPL 354 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Pl 354 (1399)
.. ......+.+++++.++...++.+.+.... ......-.+++...|++.++|.--
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 11234689999999999999987653100 000112235677888898988743
No 98
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=5.3e-07 Score=107.30 Aligned_cols=103 Identities=25% Similarity=0.259 Sum_probs=88.6
Q ss_pred cEEEecCCcccccCccccCccccceeeccCccccccchhhhccc-cccEEEcCCccccccchhhhcccCcccEEEcCCCc
Q 036079 550 RVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLY-NLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 550 r~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 628 (1399)
..+++..+.+..-+..+..+..++.|++.+|.++.+|.....+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence 46888888886555667777999999999999999999988885 999999999 5788898889999999999999998
Q ss_pred ccccCCcccccccccCccceEEeccC
Q 036079 629 SLEEMPKGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 629 ~~~~lp~~~~~L~~L~~L~l~~~~~~ 654 (1399)
+..+|...+.+++|+.|++.++.+.
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccc
Confidence 8888887778888888888766554
No 99
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.26 E-value=4.5e-06 Score=87.34 Aligned_cols=191 Identities=17% Similarity=0.162 Sum_probs=119.9
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEE-EEeCCCCCHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAW-TCVSEEFDVFRISKS 226 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~ 226 (1399)
-.+++|-+..+..+...+.+. .......+|++|.|||+-|+.++...--.+.|.+++- .+++...... +.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 456899999999999998652 4578899999999999999988864333455655542 3333332221 0000
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHHHh--cCCe-EEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhhhcc
Q 036079 227 ILNSVASDQCTDKDDLNLLQEKLKKQL--SGKK-FLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVTVNM 302 (1399)
Q Consensus 227 il~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~~~~ 302 (1399)
...+...+........ ..++ -.||||+++....+.|..+...+......++.|+.+.. ..+...+
T Consensus 108 -----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 108 -----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred -----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0011111100000000 0133 47899999999999999999888877777775554443 2222222
Q ss_pred CC-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHHH
Q 036079 303 GA-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTLG 360 (1399)
Q Consensus 303 ~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 360 (1399)
.. ...++.++|.+++...-++..+-.+.- +-..++.+.|++.++|- --|+.++-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11 135899999999999999988754332 22356778899999994 45555443
No 100
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.2e-08 Score=100.11 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=103.8
Q ss_pred ccccEEEEeecCCCCccchhhccCCCccEEEEccCCCccccC---CccCCCcccEEEccCCCccccCccccccCccCCcc
Q 036079 959 CRLRFLELSYCEGLTRLPQALLTLSSLTEMRIAHCTSLISFP---EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQ 1035 (1399)
Q Consensus 959 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~ 1035 (1399)
.+|+.|.+.++.+...+...+..-.+|+.|+++.|+.++... -+..++.|..|+|+.|...+..-.....+.-++|.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 456777777777666666677777778888888877766544 24567777888888877655554444444456788
Q ss_pred eEEecCCCCccccCC----CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccc--cccccccCcccee
Q 036079 1036 SLKIRYCKSLVSFPE----VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTH--IARIQLAPSLKRL 1109 (1399)
Q Consensus 1036 ~L~ls~~~~l~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~--~~~~~~~~~L~~L 1109 (1399)
.|++++|...-.... ...+++|..||+++|..++.--...+ ..++.|++|.++.|..+.- +-.+...|+|.+|
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 888887753322222 13457888888888887776322222 4578888888888865532 2236778889999
Q ss_pred eecccc
Q 036079 1110 IINSCH 1115 (1399)
Q Consensus 1110 ~l~~c~ 1115 (1399)
++.+|-
T Consensus 369 dv~g~v 374 (419)
T KOG2120|consen 369 DVFGCV 374 (419)
T ss_pred Eecccc
Confidence 988874
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.8e-05 Score=91.17 Aligned_cols=194 Identities=13% Similarity=0.070 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhccCcC----CCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLR----ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
.+++|-+..++.+..++...... ...-.+.+.++|++|+|||++|+.++........- +..++ .-..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg----~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCG----ECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCC----CCHHH
Confidence 35889999999999999653200 01135678899999999999999987521111000 00000 00000
Q ss_pred HHHHHhccC-----CCCCCcccHHHHH---HHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 225 KSILNSVAS-----DQCTDKDDLNLLQ---EKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 225 ~~il~~l~~-----~~~~~~~~~~~~~---~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
+.+...-.. .........+++. +.+.. -..+++-++|+|+++.........+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 000000000 0000111122222 22211 11345668889999887766666666666555556666666655
Q ss_pred h-hhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 296 L-GVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 296 ~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
. .+... .+....+.+.+++.++..+.+.+.. + .. ++.+..+++.++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 33222 2223579999999999998887532 1 11 355788999999999755444
No 102
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=1e-06 Score=72.04 Aligned_cols=58 Identities=33% Similarity=0.407 Sum_probs=50.6
Q ss_pred cccceeeccCccccccch-hhhccccccEEEcCCccccccch-hhhcccCcccEEEcCCCc
Q 036079 570 KHLRFLNLSGTEIQILPE-SINSLYNLHTILLENCHRLKKLC-KDMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 570 ~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~n~ 628 (1399)
++|++|++++|+|+.+|. .|..+++|++|++++|. +..+| ..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999974 78999999999999865 55655 568999999999999986
No 103
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.9e-06 Score=92.23 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=63.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC--CCHHHHHHHHHHhccCCCCCCccc-----HHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE--FDVFRISKSILNSVASDQCTDKDD-----LNLLQE 247 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~-----~~~~~~ 247 (1399)
....++|+|++|+|||||++.++++.... +|+.++|+.+.+. .++.++++.+...+-....+.+.. ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999865444 8999999997766 789999999844443332211111 112222
Q ss_pred HHHHH-hcCCeEEEEEcccCc
Q 036079 248 KLKKQ-LSGKKFLLVLDDVWN 267 (1399)
Q Consensus 248 ~l~~~-l~~k~~LiVlDdv~~ 267 (1399)
....+ -+++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 248999999999954
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-05 Score=95.80 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc-------------------cCCce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFEIK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~ 209 (1399)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 46899999999999988642 2345678999999999999999976321110 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH----HhcCCeEEEEEcccCccChhhHhhhcccCCCCCC
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK----QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAP 285 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~----~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~ 285 (1399)
+++..+.. ...+++.+.+.. -..+++-++|+|+++.........+...+.....
T Consensus 91 ~ei~~~~~----------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAASN----------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeecccc----------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 22221111 112222221111 1235677999999988776666766666655555
Q ss_pred CcEEEEecCCh-hhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHHH
Q 036079 286 GSKIVVTTRNL-GVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTLG 360 (1399)
Q Consensus 286 ~s~iivTtr~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 360 (1399)
.+.+|++|.++ .+... ......+++.+++.++..+.+.+.+.... . ...++....|++.++|.+- |+..+-
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i---~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-I---PFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66666655443 22211 11124689999999999988887653322 1 1225667889999999774 444443
No 105
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.8e-05 Score=81.90 Aligned_cols=178 Identities=20% Similarity=0.213 Sum_probs=100.9
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
-.+|||.++.++++.=.+..... .+...--+.++|++|.||||||.-+++...+ .+. +.-+....-..-+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k----~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLK----ITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeE----ecccccccChhhHHHH
Confidence 34699999999988877765433 4566778999999999999999999984322 221 1111111111112222
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCC--------CCCCCcE-----------
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFE--------AVAPGSK----------- 288 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~--------~~~~~s~----------- 288 (1399)
+..+. +.=++++|.++......-+.+..++. ..++++|
T Consensus 98 Lt~Le-----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 98 LTNLE-----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HhcCC-----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 22221 22245556665533222121111111 1122232
Q ss_pred EEEecCChhhhhccCC--CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 289 IVVTTRNLGVTVNMGA--DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 289 iivTtr~~~~~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
|=-|||.-.+...... .-+.+++-.+.+|-.++..+.+.- -+ ..-.++.+.+|+++..|-|--..-+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~---i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LG---IEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hC---CCCChHHHHHHHHhccCCcHHHHHH
Confidence 3358886433222211 124788999999999999887732 11 1223678899999999999544333
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.2e-05 Score=95.08 Aligned_cols=200 Identities=18% Similarity=0.162 Sum_probs=115.1
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC--ceEEEEeCCCCCHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~ 225 (1399)
-.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++......... ...|..+. .-..-+
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~ 93 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQ 93 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHH
Confidence 346999999999999998642 2345788999999999999999987432111100 00000000 001111
Q ss_pred HHHHhccC-------CCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEec-CCh
Q 036079 226 SILNSVAS-------DQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTT-RNL 296 (1399)
Q Consensus 226 ~il~~l~~-------~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-r~~ 296 (1399)
.|...-.. ......+++.++.+.+... ..+++-++|+|+++.........+...+.....++.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 12111100 0000112222222222211 22456689999998877666777776665555666666555 333
Q ss_pred hhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 297 GVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 297 ~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
.+...+ .....+++.+++.++....+.+.+..... . -.++.+..|++.++|.+.-+....
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~---i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-E---VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332222 22246899999999999999887643221 1 124677889999999986554443
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.1e-05 Score=92.13 Aligned_cols=200 Identities=15% Similarity=0.155 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEE-eCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTC-VSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 227 (1399)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++.......+....|.. .......-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46899999899888888532 2335688999999999999999986332211111111110 00011111111111
Q ss_pred HHhccCC----CCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEec-CChhh
Q 036079 228 LNSVASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTT-RNLGV 298 (1399)
Q Consensus 228 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-r~~~~ 298 (1399)
....... ........+++.+..... ..+++-++|+|+++......++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1110000 000111133333222111 23566689999998877667777777766555666666555 33333
Q ss_pred hhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHH
Q 036079 299 TVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAK 357 (1399)
Q Consensus 299 ~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 357 (1399)
...+ .....+++.++++++..+.+...+.... . .-.++.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~---~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-I---SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 2221 1123588999999999888887653221 1 1225778899999999775333
No 108
>PRK09087 hypothetical protein; Validated
Probab=98.18 E-value=1.9e-05 Score=84.10 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=88.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
.+.+.|+|++|+|||+|++.++... .+.|++.. ....+++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~----------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAAN----------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHH----------------------hhhc
Confidence 3578999999999999999888632 11233221 11111111 1111
Q ss_pred CeEEEEEcccCccC--hhhHhhhcccCCCCCCCcEEEEecCC---------hhhhhccCCCCceecCCCChhhHHHHHHH
Q 036079 256 KKFLLVLDDVWNES--YNYWSILSCPFEAVAPGSKIVVTTRN---------LGVTVNMGADPAYQLKELSNDDCLCVLTQ 324 (1399)
Q Consensus 256 k~~LiVlDdv~~~~--~~~~~~l~~~~~~~~~~s~iivTtr~---------~~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 324 (1399)
-+|++||++... +..+-.+...+. ..|..||+|++. +++..++.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 278889995432 222222222222 246679998874 23334455556899999999999999998
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 325 ISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.+.. .... -.+++..-|++++.|..-++..+-..|
T Consensus 165 ~~~~-~~~~---l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 165 LFAD-RQLY---VDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHH-cCCC---CCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8743 2222 226778889999999887776544333
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.7e-05 Score=93.50 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe-------CCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV-------SEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~-------~~~~~~~ 221 (1399)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.++...-.....+ .+..+ ...++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 45899999999999999642 2346778999999999999999986321111000 00000 0000000
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE-ecCChhhh
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV-TTRNLGVT 299 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv-Ttr~~~~~ 299 (1399)
.+.+......++.+++.+.+... ..+++-++|+|+++......+..+...+...+..+.+|+ |++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000000112223333333221 235677999999988777777777766655445555554 44444343
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTLG 360 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 360 (1399)
.. ......+++.+++.++..+.+...+..... ....+.+..|++.++|.+- |+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 222357999999999999888876533221 1124567889999999764 444443
No 110
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=4.8e-06 Score=92.39 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=68.5
Q ss_pred HHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC--CHHHHHHHHHHhccCCCC
Q 036079 159 EAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF--DVFRISKSILNSVASDQC 236 (1399)
Q Consensus 159 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~ 236 (1399)
-++++.+.. -.+.+..+|+|++|+||||||+++|+..... +|+.++||.+.+.. .+.++++++...+-....
T Consensus 157 ~rvID~l~P-----IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAP-----IGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeecc-----cccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 355666643 2344567899999999999999999865444 89999999988887 777888888754433322
Q ss_pred CCcccHH-----HHHHHHHHH-hcCCeEEEEEcccCc
Q 036079 237 TDKDDLN-----LLQEKLKKQ-LSGKKFLLVLDDVWN 267 (1399)
Q Consensus 237 ~~~~~~~-----~~~~~l~~~-l~~k~~LiVlDdv~~ 267 (1399)
+.+.... ...+.-+.+ ..+++++|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 2222111 111111121 358999999999954
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=98.12 E-value=3.8e-05 Score=82.69 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=93.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
...+.|+|..|+|||.||+++++. ....-..++|++..+ +... .. .+.+.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 367899999999999999999873 222223466766421 1110 01 12222222
Q ss_pred CeEEEEEcccCccC-hhhHhh-hcccCCC-CCCCcEEEEecCChhh---------hhccCCCCceecCCCChhhHHHHHH
Q 036079 256 KKFLLVLDDVWNES-YNYWSI-LSCPFEA-VAPGSKIVVTTRNLGV---------TVNMGADPAYQLKELSNDDCLCVLT 323 (1399)
Q Consensus 256 k~~LiVlDdv~~~~-~~~~~~-l~~~~~~-~~~~s~iivTtr~~~~---------~~~~~~~~~~~l~~l~~~~~~~l~~ 323 (1399)
-. ++|+||+.... ...|+. +...+.. ...|.+||+|++.... ..++.....+++++++.++-.++++
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 67889996431 123332 3333321 1346678888875322 2223334568999999999999999
Q ss_pred HhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 324 QISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
+++... .... .+++..-|++++.|..-++..+-..|
T Consensus 177 ~ka~~~-~~~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRR-GLHL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHc-CCCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 666432 2222 25788889999999876665554444
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.5e-05 Score=91.28 Aligned_cols=199 Identities=18% Similarity=0.190 Sum_probs=114.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|-+..++.+..++... .-...+.++|+.|+||||+|+.+++......... ....+.-..-+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 35899988888888888532 2246788999999999999999987432111000 00011111111111
Q ss_pred Hhcc-------CCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhh
Q 036079 229 NSVA-------SDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVT 299 (1399)
Q Consensus 229 ~~l~-------~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~ 299 (1399)
.... .......++...+.+.+.. -..+++-+||+|+++......+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1100 0000011112222222211 12356779999999887766677777666544445556665544 3333
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh-HHHHHHHhhh
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP-LAAKTLGSLL 363 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 363 (1399)
.. ......+++.+++.++..+.+...+..... .-.++.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 122246899999999999988876643221 112567788999999964 6777766544
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.12 E-value=3.1e-05 Score=82.25 Aligned_cols=189 Identities=16% Similarity=0.207 Sum_probs=106.2
Q ss_pred Cccccch-hhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC--CceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGRE-KDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~ 225 (1399)
..++|.. +..-...+.+... .+.....+.|+|..|+|||.|.+++++. ..... ..++|++ ..+...
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~---~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~ 77 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAEN---PGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIR 77 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHS---TTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhc---CCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHH
Confidence 3456753 3334445555443 2234456899999999999999999984 33222 2355654 445555
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh-hHh-hhcccCCC-CCCCcEEEEecCCh------
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN-YWS-ILSCPFEA-VAPGSKIVVTTRNL------ 296 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~-~~~-~l~~~~~~-~~~~s~iivTtr~~------ 296 (1399)
.+...+... .. ..+++.++ .-=++++||++..... .|+ .+...+.. ...|.+||+|++..
T Consensus 78 ~~~~~~~~~------~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRDG------EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHTT------SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHcc------cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 565555431 11 22333343 3347899999764322 232 22222211 13466899999653
Q ss_pred ---hhhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 297 ---GVTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 297 ---~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
.+..++.....+++++.++++..+++.+.+.... .. -.++++.-|++++.+..-.+..+-..|
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~-~~---l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG-IE---LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-CC---CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2334444555799999999999999998874322 22 236778888888888776665554433
No 114
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.12 E-value=5.5e-05 Score=81.21 Aligned_cols=199 Identities=17% Similarity=0.146 Sum_probs=119.7
Q ss_pred ccccch---hhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh----ccCCceEEEEeCCCCCHHH
Q 036079 150 KVYGRE---KDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 150 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~ 222 (1399)
.+||-. +.++++.+++... ...+.+-+.|||.+|.|||++++++....-.. ..--.++.|.+...++...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 455542 3456666666543 44566789999999999999999998543111 1112577788889999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC-CeEEEEEcccCcc------ChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNE------SYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~~~------~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
++..|+.+++.+.. ..+..........+.++. +--++|+|++++. .+...-.....+.+.-.-+-|.|-|++
T Consensus 112 ~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 112 FYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 99999999998865 334445555555555543 4558999999762 111111122223333344566777764
Q ss_pred h--------hhhhccCCCCceecCCCChh-hHHHHHHHhh--cCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 296 L--------GVTVNMGADPAYQLKELSND-DCLCVLTQIS--LGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 296 ~--------~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
. +.+..+ ..+.+..-..+ +...|+.... ..-+..+ .-..+++++.|...++|+.=-+
T Consensus 191 A~~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 191 AYRALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHH
Confidence 2 232222 34556555544 4455554332 1212111 1234789999999999986433
No 115
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=2.8e-07 Score=97.75 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=28.2
Q ss_pred HhhhcCCCCcccEEEecCCccc-----ccCccccCccccceeeccC
Q 036079 539 VLQMLLNLPRLRVFSLHGYCVS-----KLPNEIGNLKHLRFLNLSG 579 (1399)
Q Consensus 539 ~~~~~~~l~~Lr~L~L~~n~i~-----~lp~~~~~l~~L~~L~Ls~ 579 (1399)
+.+.+..+..+..++|++|.+. .+-..+.+.++||.-++++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 3444677778888888888775 2345566667777777776
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.3e-05 Score=94.04 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+++........ ......+.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHh
Confidence 46999999999998888642 234567899999999999999998632111000 0001111122223332
Q ss_pred HhccCC-------CCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhh
Q 036079 229 NSVASD-------QCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVT 299 (1399)
Q Consensus 229 ~~l~~~-------~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~ 299 (1399)
...... .....++..++.+.+... ..+++-++|+|+++.......+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 000111222222222211 1256678999999877666666666665554456666666543 2232
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHh
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGS 361 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 361 (1399)
.. ......+++.+++.++....+...+..... . -.++.+..|++.++|.+..+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~---i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-N---LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 122246889999999998888877643221 1 1246788999999998865554433
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7.6e-05 Score=89.97 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||.+..++.+..++... .-...+.++|+.|+||||+|+.++.......... +..+ +.-..-+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pC----g~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPC----GVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcc----cccHHHHHhh
Confidence 46899999999999998642 2345678999999999999999986322111000 0000 0001111111
Q ss_pred Hh---------ccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hh
Q 036079 229 NS---------VASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LG 297 (1399)
Q Consensus 229 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~ 297 (1399)
.. +........++..++.+.+... ..+++-++|+|+++.........+...+........+|++|.. ..
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000122222333322211 2356668999999888777777777777665566666655543 33
Q ss_pred hhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHHHhhh
Q 036079 298 VTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTLGSLL 363 (1399)
Q Consensus 298 ~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l 363 (1399)
+... ......+++.+++.++..+.+.+.+..... . -..+.+..|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-V---VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 222356999999999999888876643221 1 124567889999999774 555554433
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=8.6e-05 Score=87.98 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc--c----------------CC-ce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--H----------------FE-IK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~--~----------------f~-~~ 209 (1399)
.+++|-+...+.+..++... .-.++..++|+.|+||||+|+.+++..-... . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899999999999988542 2345778999999999999998875321000 0 00 01
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCC
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAP 285 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~ 285 (1399)
++++.... ...+++.+.+... ..+++-++|+|+++.........+...+.....
T Consensus 89 ~eldaas~----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMDAASN----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEeccccc----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 11111111 1123333333221 124667899999988877777777776665566
Q ss_pred CcEEEEecCCh-hhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 286 GSKIVVTTRNL-GVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 286 ~s~iivTtr~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.+++|++|.+. .+... ......+++.+++.++..+.+.+.+.... . .-.++.+..|++.++|.+--+...
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-V---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 67777766653 22111 11224699999999999999887664322 1 112567889999999988554444
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.0001 Score=87.61 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch--hc-----------------cCCce
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV--QR-----------------HFEIK 209 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~-----------------~f~~~ 209 (1399)
.+++|-+...+.+..++... .-.+.+.++|+.|+||||+|+.++..... .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 35899999999999999642 23456778999999999999998863211 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcE
Q 036079 210 AWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSK 288 (1399)
Q Consensus 210 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 288 (1399)
.++..+... ..++.+.+.+.+... ..+++-++|+|+++.......+.+...+........
T Consensus 91 ~eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111110 111122222222211 235677999999987766666666666655444555
Q ss_pred EEEec-CChhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 289 IVVTT-RNLGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 289 iivTt-r~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
+|++| +...+... ......+.+.+++.++....+.+.+-... . ...++++..|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-I---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554 43333221 12234689999999999988887664322 1 1224667889999999876554443
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=9.5e-05 Score=86.52 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh------ccCCceE-EEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ------RHFEIKA-WTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------~~f~~~~-wv~~~~~~~~~ 221 (1399)
.+++|.+...+.+..++... .-.+.+.++|++|+||||+|+.+++..... ..|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 35899999999999998532 234688999999999999999997632110 1121111 1111010011
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecC-Chhhh
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTR-NLGVT 299 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr-~~~~~ 299 (1399)
.+..++.+.+.. -..+++-+||+|+++......+..+...+......+.+|++|. ...+.
T Consensus 91 ------------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 ------------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ------------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 111111111111 1124556899999976655556666554444344555555553 32222
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
.. ......+++.++++++....+...+....- . -.++++..|++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~---i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-K---FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhCCCCHHHH
Confidence 11 112246899999999999888877643221 1 12577888999999966533
No 121
>PF14516 AAA_35: AAA-like domain
Probab=98.05 E-value=0.00046 Score=78.63 Aligned_cols=203 Identities=13% Similarity=0.137 Sum_probs=117.6
Q ss_pred cCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-----CCHH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-----FDVF 221 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 221 (1399)
+.+..|.|...-+++.+.+.. ....+.|.|+..+|||+|..++.+..+.. .| .++++++... .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 445678998666777777743 23589999999999999999998743322 33 3557776542 2455
Q ss_pred HHHHHHHHhc----cCCCCC------CcccHHHHHHHHHHHh-c--CCeEEEEEcccCccCh------hhHhhhcccCCC
Q 036079 222 RISKSILNSV----ASDQCT------DKDDLNLLQEKLKKQL-S--GKKFLLVLDDVWNESY------NYWSILSCPFEA 282 (1399)
Q Consensus 222 ~~~~~il~~l----~~~~~~------~~~~~~~~~~~l~~~l-~--~k~~LiVlDdv~~~~~------~~~~~l~~~~~~ 282 (1399)
+.++.++..+ +....- ...........+.+++ . +++.+|++|+++..-. +.+..+......
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 5555555444 332110 0111122333344432 2 6899999999965211 112222111111
Q ss_pred C-----CCCcE-EEEecCChhhhhc-----cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC
Q 036079 283 V-----APGSK-IVVTTRNLGVTVN-----MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG 351 (1399)
Q Consensus 283 ~-----~~~s~-iivTtr~~~~~~~-----~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (1399)
. -..-+ |++.+........ +.....++|++++.+|...|+.++...- . ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCC
Confidence 1 01111 2222211111111 1222468999999999999998764221 1 2338899999999
Q ss_pred ChHHHHHHHhhhcCC
Q 036079 352 LPLAAKTLGSLLRGK 366 (1399)
Q Consensus 352 ~Plal~~~~~~l~~~ 366 (1399)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00012 Score=88.96 Aligned_cols=202 Identities=17% Similarity=0.167 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEE-eCCCCCHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTC-VSEEFDVFRISKSI 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 227 (1399)
.++||-+..+..+..++..+ .-...+.++|+.|+||||+|+.+++........+...|.. .......-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899999999998888532 2345688999999999999999986432211111011111 00111111111111
Q ss_pred HHhccCC----CCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEec-CChhh
Q 036079 228 LNSVASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTT-RNLGV 298 (1399)
Q Consensus 228 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-r~~~~ 298 (1399)
...-... ........+++.+.+... ..+++-++|+|+++.......+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000111233333322221 23556688999998877666777777666555556655544 43333
Q ss_pred hhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH-HHHHH
Q 036079 299 TVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL-AAKTL 359 (1399)
Q Consensus 299 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 359 (1399)
... ......+++.+++.++....+.+.+..... . -.++.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~---I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-Q---IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 222 222356999999999988888776532221 1 125678889999999654 44433
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=8.2e-05 Score=87.96 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc---------------------cCC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---------------------HFE 207 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~ 207 (1399)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++...... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 46899999999999998542 2346788999999999999999976321110 011
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCC
Q 036079 208 IKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPG 286 (1399)
Q Consensus 208 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~ 286 (1399)
..++...... ..++..++.+.+.. ...+++-++|+|+++.......+.+...+......
T Consensus 92 -~~~i~g~~~~-------------------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHR-------------------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccC-------------------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1111100000 11122222222211 12356778999999776555566666666554556
Q ss_pred cEEEEecCC-hhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh-HHHHHH
Q 036079 287 SKIVVTTRN-LGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP-LAAKTL 359 (1399)
Q Consensus 287 s~iivTtr~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 359 (1399)
+.+|++|.. ..+... ......+++.++++++....+...+.... . .-.++.+..|++.++|.+ .|+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666666643 222211 11224689999999999888887653321 1 122567889999999976 444444
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=9.1e-05 Score=87.56 Aligned_cols=171 Identities=14% Similarity=0.125 Sum_probs=102.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
...+.|+|..|+|||.|++++++.......-..+++++ ..++...+...+.... .....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHhc-
Confidence 45689999999999999999987322111112334443 3456666666654310 11223333333
Q ss_pred CeEEEEEcccCccC--hhhHhhhcccCCC-CCCCcEEEEecCCh---------hhhhccCCCCceecCCCChhhHHHHHH
Q 036079 256 KKFLLVLDDVWNES--YNYWSILSCPFEA-VAPGSKIVVTTRNL---------GVTVNMGADPAYQLKELSNDDCLCVLT 323 (1399)
Q Consensus 256 k~~LiVlDdv~~~~--~~~~~~l~~~~~~-~~~~s~iivTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l~~ 323 (1399)
+.-++|+||+.... ....+.+...+.. ...|..||+|+... .+..++...-.+.+++++.++..+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34488899996543 1122333332221 12345688887643 223344445568899999999999999
Q ss_pred HhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 324 QISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
+++-... .. ..-.+++..-|++.++|.|-.+.-+...+
T Consensus 286 ~~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 286 KEIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8874321 10 12336788999999999998777665433
No 125
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=2.9e-05 Score=90.28 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=99.7
Q ss_pred cCCccccchhhHHHHHHHHhccCcC-------CCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
...++.|+++.++++.+.+...-.. +-..++.+.|+|++|+|||++|+++++. ....| +.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~---- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV---- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc----
Confidence 4457899999999999887431100 1123566899999999999999999973 33332 2221
Q ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC-----------hh---hHhhhcccCC--CC
Q 036079 220 VFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES-----------YN---YWSILSCPFE--AV 283 (1399)
Q Consensus 220 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~-----------~~---~~~~l~~~~~--~~ 283 (1399)
..++ .....+ .........+...-...+.+|++|+++... .. .+..+...+. ..
T Consensus 189 ~~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 GSEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hHHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 111100 111111222222223467899999986521 11 1112221111 11
Q ss_pred CCCcEEEEecCChhhhh-cc----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 284 APGSKIVVTTRNLGVTV-NM----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 284 ~~~s~iivTtr~~~~~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
..+.+||.||....... .+ .-...+.+...+.++..++|..++.+... ... .....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-Ccc----CCHHHHHHHcCCCC
Confidence 24667888887543221 11 11245889999999999999987643221 111 12356777787753
No 126
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.1e-06 Score=61.65 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccc
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP 586 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp 586 (1399)
+|++|++++|+|+.+|..|++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666666555566666666666666555443
No 127
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=9.6e-05 Score=92.85 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||.+..++.|..++... .-...+.++|+.|+||||+|+.+++.......... .....-..-+.+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 36899999999999998642 23356789999999999999999864321111000 0000000000110
Q ss_pred Hh---------ccCCCCCCcccHHHHHHHHH-HHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-h
Q 036079 229 NS---------VASDQCTDKDDLNLLQEKLK-KQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-G 297 (1399)
Q Consensus 229 ~~---------l~~~~~~~~~~~~~~~~~l~-~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~ 297 (1399)
.. +........+++.++.+.+. .-..+++-++|||+++......+..|...+......+.+|++|.+. .
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000001122222222211 1133566689999999888777888877777666676666655443 3
Q ss_pred hhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 298 VTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 298 ~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
+...+ .....|++.+++.++..+.+.+..-... .. ...+....|++.++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VP---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHH
Confidence 33222 2235689999999999888887653222 11 12456678999999988433
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00013 Score=89.34 Aligned_cols=197 Identities=15% Similarity=0.178 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.++......... ... .......+..+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~-~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD-KPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCCCcC-CCC----CCCCcccHHHHHHh
Confidence 45899999999999988642 123567899999999999999998743211100 000 01111112222222
Q ss_pred HhccCC----CCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhh
Q 036079 229 NSVASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVT 299 (1399)
Q Consensus 229 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~ 299 (1399)
...... ........+++.+.+... ..+++-++|+|+++......+..+...+......+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 211110 000112223333322211 12556689999998877767777776666544555555555443 222
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.. ......+++.+++.++....+...+..... . -.++.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-E---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 122246888899999988888776543221 1 12456788999999987655443
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1.1e-06 Score=104.45 Aligned_cols=119 Identities=23% Similarity=0.229 Sum_probs=91.4
Q ss_pred hhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCccc
Q 036079 541 QMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLH 620 (1399)
Q Consensus 541 ~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 620 (1399)
..+..+++|..|++.+|.|..+...+..+++|++|+|++|.|+.+. .+..++.|+.|++++| .+..+ ..+..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDI-SGLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhc-cCCccchhhh
Confidence 3478889999999999999988766888999999999999999884 5788888999999995 56655 3466689999
Q ss_pred EEEcCCCcccccCCcc-cccccccCccceEEeccCCCCChhccc
Q 036079 621 HLRNSNVDSLEEMPKG-FGKLTCLLTLCTFVVGKDGGSGLRELK 663 (1399)
Q Consensus 621 ~L~l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~~~~~~~~~L~ 663 (1399)
.+++++|. +..++.. ...+.+++.+.+..+.+.....+..+.
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~ 208 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLK 208 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHH
Confidence 99999998 5555443 477788888877666655444333333
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.00022 Score=79.04 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=83.3
Q ss_pred ccccchhhHHHHHHHHh---cc------CcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 150 KVYGREKDKEAIVELLL---RD------DLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~---~~------~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
.++|-+..++++.++.. -. ..........+.++|++|+||||+|+.+++.....+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 47777666665544321 10 000112234588999999999999999986321111111122444441
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCcc---------ChhhHhhhcccCCCCCCCcEEEE
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE---------SYNYWSILSCPFEAVAPGSKIVV 291 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iiv 291 (1399)
.+ +...+.+.. .......+.+. ..-+|++|+++.. ..+..+.+...+.....+.+||+
T Consensus 100 ~~----l~~~~~g~~------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ 166 (287)
T CHL00181 100 DD----LVGQYIGHT------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIF 166 (287)
T ss_pred HH----HHHHHhccc------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEE
Confidence 12 222222111 11122223322 2349999999642 11222334444444445567777
Q ss_pred ecCChhh----------hhccCCCCceecCCCChhhHHHHHHHhhc
Q 036079 292 TTRNLGV----------TVNMGADPAYQLKELSNDDCLCVLTQISL 327 (1399)
Q Consensus 292 Ttr~~~~----------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 327 (1399)
++..... ...+ ...+.+++++.+|..+++...+.
T Consensus 167 ag~~~~~~~~~~~np~L~sR~--~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 167 AGYKDRMDKFYESNPGLSSRI--ANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred eCCcHHHHHHHhcCHHHHHhC--CceEEcCCcCHHHHHHHHHHHHH
Confidence 7764332 2222 23589999999999999888764
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00018 Score=88.18 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=109.8
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh---------------------ccCC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---------------------RHFE 207 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------~~f~ 207 (1399)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.++...... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 36899999999999998642 234668899999999999999887632110 1122
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCC
Q 036079 208 IKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAV 283 (1399)
Q Consensus 208 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~ 283 (1399)
+.+++.... ...+++.+.+.+. ..+++-++|+|+++......+..+...+...
T Consensus 92 -~~~ld~~~~----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 -IHELDAASN----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred -eEEeccccc----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 111111111 1122222222111 1245668899999888777777777777665
Q ss_pred CCCcEEEEec-CChhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 284 APGSKIVVTT-RNLGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 284 ~~~s~iivTt-r~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
..++.+|++| +...+... ......+++.+++.++....+.+.+.... .. ..++.+..|+++++|..--+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~---i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-IT---AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHH
Confidence 5666665544 44333322 22235699999999999998887664322 11 12467788999999976433
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.94 E-value=4.8e-05 Score=87.27 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=84.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|.+...+.+..++.. +....++.++|++|+||||+|+.+++.. .. ....++.+. ... +..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~-----~~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKK-----GRIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc-----CCCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccH-HHHHHHH
Confidence 5689999999999999863 2345688889999999999999998732 11 123344333 111 1111111
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCcc-ChhhHhhhcccCCCCCCCcEEEEecCChhh-hhcc-CCC
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-SYNYWSILSCPFEAVAPGSKIVVTTRNLGV-TVNM-GAD 305 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~-~~~~~~~l~~~~~~~~~~s~iivTtr~~~~-~~~~-~~~ 305 (1399)
..+... . ...+.+-+||+||++.. .....+.+...+.....++++|+||..... ...+ ...
T Consensus 89 ~~~~~~--------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFAST--------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHh--------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111000 0 01134568999999765 222333444334444567788888875321 1111 111
Q ss_pred CceecCCCChhhHHHHHHH
Q 036079 306 PAYQLKELSNDDCLCVLTQ 324 (1399)
Q Consensus 306 ~~~~l~~l~~~~~~~l~~~ 324 (1399)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3467777777777666543
No 133
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00013 Score=85.00 Aligned_cols=107 Identities=26% Similarity=0.291 Sum_probs=71.5
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
+.+.+|.++..++|.+++.-....++.+.+++..+|++|||||++|+.++. .....| +-+++++-.|..++--.=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccc
Confidence 556899999999999999765544566789999999999999999999997 333333 235566666666552110
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
-.. -+.-+..+.+.+++. +...=|+.+|.|+.
T Consensus 485 RTY-------VGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 RTY-------VGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred eee-------eccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 000 111223444555443 45667889999854
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00026 Score=85.72 Aligned_cols=195 Identities=19% Similarity=0.149 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..-...... ...+....+. +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHH
Confidence 46899999999999999642 2346788999999999999999987422111000 0000000000 1111
Q ss_pred Hh-------ccCCCCCCcccHHHHHHHHHH-HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhh
Q 036079 229 NS-------VASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVT 299 (1399)
Q Consensus 229 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~ 299 (1399)
.. +.+......++..++.+.+.. -..+++-++|+|+++......+..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10 000000011122222222221 12356668999999888777777777777655566666666644 2332
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.. ......+++.+++.++..+.+.+.+.... . .-.++.+..|++.++|.+-.+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i---~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-I---KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 12224589999999999888887764322 1 123577788999999987544333
No 135
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.92 E-value=0.00012 Score=80.71 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=82.2
Q ss_pred ccccchhhHHHHHHHHhcc---------CcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 150 KVYGREKDKEAIVELLLRD---------DLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
.++|.+..++++.+..... .....+....+.++|++|+||||+|+.+++.....+......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4888887776665443210 1112345567889999999999999999863211111111123332221
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC--------hhhHhhhcccCCCCCCCcEEEEe
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES--------YNYWSILSCPFEAVAPGSKIVVT 292 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~--------~~~~~~l~~~~~~~~~~s~iivT 292 (1399)
+ +.....+ .......+.+.+. ..-+|++|+++... ....+.+...+........+|++
T Consensus 84 -~----l~~~~~g------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -D----LVGEYIG------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -H----hhhhhcc------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 1 1111111 1111222223222 23489999997522 12233344444333333455566
Q ss_pred cCChhh----------hhccCCCCceecCCCChhhHHHHHHHhhc
Q 036079 293 TRNLGV----------TVNMGADPAYQLKELSNDDCLCVLTQISL 327 (1399)
Q Consensus 293 tr~~~~----------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 327 (1399)
+...+. ...+ ...+.+++++.++..+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHH
Confidence 543222 1222 13478999999999999987764
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.3e-06 Score=103.77 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=89.3
Q ss_pred CCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEE
Q 036079 544 LNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLR 623 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 623 (1399)
..+..++.+.+..|.+..+-..++.++.|.+|++.+|.|..+...+..+++|++|++++| .+..+ ..+..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhe
Confidence 345667777788898888666788999999999999999999766899999999999994 67766 4588888899999
Q ss_pred cCCCcccccCCcccccccccCccceEEeccCCCCC
Q 036079 624 NSNVDSLEEMPKGFGKLTCLLTLCTFVVGKDGGSG 658 (1399)
Q Consensus 624 l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~~ 658 (1399)
+++|. +..++ ++..+++|+.+++.++.+.....
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred eccCc-chhcc-CCccchhhhcccCCcchhhhhhh
Confidence 99998 66653 56668888888887776654333
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00032 Score=76.14 Aligned_cols=170 Identities=20% Similarity=0.212 Sum_probs=104.4
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
.+.|.+|+.+++.+..++...+ ..-+..|.|+|-+|.|||.+.+++.+... ...+|+++-+.++.+-.+.+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4578999999999999886432 12355679999999999999999998431 236899999999999999999
Q ss_pred HHhccC-CCCCCc-----ccHHHHHHHHHHH--hc--CCeEEEEEcccCccCh---hhHhhhcccCCCCCCCcEEEEecC
Q 036079 228 LNSVAS-DQCTDK-----DDLNLLQEKLKKQ--LS--GKKFLLVLDDVWNESY---NYWSILSCPFEAVAPGSKIVVTTR 294 (1399)
Q Consensus 228 l~~l~~-~~~~~~-----~~~~~~~~~l~~~--l~--~k~~LiVlDdv~~~~~---~~~~~l~~~~~~~~~~s~iivTtr 294 (1399)
+.+... +.+... .........+.++ .+ ++.++||||+++.-.+ .-+..+.....-.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 999952 221111 1112222233331 11 4689999999955321 111111111100112233444444
Q ss_pred Chhh---hhccCCCC--ceecCCCChhhHHHHHHHh
Q 036079 295 NLGV---TVNMGADP--AYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 295 ~~~~---~~~~~~~~--~~~l~~l~~~~~~~l~~~~ 325 (1399)
.... ....+... ++.+..-+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3221 12233332 4677888999999988764
No 138
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.88 E-value=2.6e-05 Score=87.33 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=64.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC--CCHHHHHHHHHHhccCCCCCCcccH-----HHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE--FDVFRISKSILNSVASDQCTDKDDL-----NLLQE 247 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~-----~~~~~ 247 (1399)
....++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.++..+-....+.+... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4567899999999999999999985433 37999999998866 6899999999665544433222111 11112
Q ss_pred HHHHH-hcCCeEEEEEcccCcc
Q 036079 248 KLKKQ-LSGKKFLLVLDDVWNE 268 (1399)
Q Consensus 248 ~l~~~-l~~k~~LiVlDdv~~~ 268 (1399)
..+.. .++++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 3589999999999553
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.86 E-value=0.00025 Score=74.93 Aligned_cols=138 Identities=10% Similarity=0.026 Sum_probs=82.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
+.+.|+|++|+|||+|++.+++... . .++. .... . + +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~-------------------~---~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF-------------------N---E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh-------------------c---h-------hHHh-c
Confidence 5789999999999999999876321 1 1211 0000 0 0 0111 2
Q ss_pred eEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-------hhhccCCCCceecCCCChhhHHHHHHHhhcCC
Q 036079 257 KFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-------VTVNMGADPAYQLKELSNDDCLCVLTQISLGA 329 (1399)
Q Consensus 257 ~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-------~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 329 (1399)
.-++++||++.........+...+. ..|..||+|++.+. +..++....+++++++++++-.+++.+.+..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~- 162 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI- 162 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-
Confidence 3478899996432111112211111 34668999988532 2333444457999999999988888877642
Q ss_pred CCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 330 RDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.... -.+++.+-|++++.|.--.+.-+
T Consensus 163 ~~l~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 163 SSVT---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred cCCC---CCHHHHHHHHHHccCCHHHHHHH
Confidence 2222 22678888999888875554443
No 140
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00027 Score=86.45 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++||.+...+.+..++... .-.+.+.++|+.|+||||+|+.+++......... + ...+....-+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---~----~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT---A----EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---C----CCCCccHHHHHHh
Confidence 46999999999999988542 2346678999999999999999986421111100 0 0000000001110
Q ss_pred Hh-------ccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEec-CChhhh
Q 036079 229 NS-------VASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTT-RNLGVT 299 (1399)
Q Consensus 229 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-r~~~~~ 299 (1399)
.. +.+......++.+++.+.+... ..+++-++|+|+++.........+...+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000112222232222211 23456689999998877666777776665555566666554 444343
Q ss_pred hcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh-HHHHHHH
Q 036079 300 VNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP-LAAKTLG 360 (1399)
Q Consensus 300 ~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 360 (1399)
..+ .....+++.+++.++....+...+.... . .-.++.+..|+++++|.. .|+..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i---~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-I---SISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 2234688999999999888877653322 1 112567788999999965 5555543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.84 E-value=9.7e-05 Score=93.81 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc---hhccC-CceEEEEeCCCCCHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHF-EIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 224 (1399)
+.++||+.+++++++.|... ...-+.++|++|+|||++|+.+++... +...+ ...+|.. +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH--
Confidence 36999999999999998653 223467999999999999999987321 11111 2334421 1111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccC---------hhhHhhhcccCCCCCCC-cEEEEec
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNES---------YNYWSILSCPFEAVAPG-SKIVVTT 293 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~---------~~~~~~l~~~~~~~~~~-s~iivTt 293 (1399)
++.. . . ...+.++..+.+.+.+ +.++.+|++|+++..- .+.-+.+...+ ..| -++|-+|
T Consensus 249 --l~a~---~-~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaT 318 (731)
T TIGR02639 249 --LLAG---T-K-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGST 318 (731)
T ss_pred --Hhhh---c-c-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEec
Confidence 1110 0 0 1112222233333332 3468999999996421 11112222222 233 3445444
Q ss_pred CChhhhh------c-cCCCCceecCCCChhhHHHHHHHhh
Q 036079 294 RNLGVTV------N-MGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 294 r~~~~~~------~-~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
...+... . ....+.+++++.+.++..++++...
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4322111 0 1112468999999999999998654
No 142
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=0.00012 Score=83.65 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=77.0
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++++.+..++.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.+....+..+.+..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45888899999999998642 468889999999999999999754444567788899999888876664322
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHh--cCCeEEEEEcccCccChhh-HhhhcccC
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQL--SGKKFLLVLDDVWNESYNY-WSILSCPF 280 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LiVlDdv~~~~~~~-~~~l~~~~ 280 (1399)
......-.....-..+.+.+.. .++++++|+|++....... +.++...+
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 1110000000011222222222 2478999999997766443 44443333
No 143
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00054 Score=83.42 Aligned_cols=193 Identities=18% Similarity=0.171 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.++........-+ ..+.+....-+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 46999999999999998643 2356778899999999999999975321111000 00011111111111
Q ss_pred Hhc-------cCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEec-CChhhh
Q 036079 229 NSV-------ASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTT-RNLGVT 299 (1399)
Q Consensus 229 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-r~~~~~ 299 (1399)
... ........+...++.+.+... ..+++-++|+|+++......+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110 000000111222222222211 23567789999998877667777766665444455555544 433332
Q ss_pred hc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHH
Q 036079 300 VN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAK 357 (1399)
Q Consensus 300 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 357 (1399)
.. ......+++.+++.++....+...+.... . .-.++.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEG-I---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 12224688999999999888887663322 1 1124667889999999775443
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.80 E-value=0.00036 Score=82.63 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=93.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccC--CceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
...+.|+|++|+|||.||+++++.. .... ..++|++ ..+...++...+... ..+. +.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~----~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEE----FKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHH----HHHHH
Confidence 4568999999999999999999843 2222 2345554 334444555544321 1222 22223
Q ss_pred cCCeEEEEEcccCccChh--hHhhhcccCCCC-CCCcEEEEecCCh-h--------hhhccCCCCceecCCCChhhHHHH
Q 036079 254 SGKKFLLVLDDVWNESYN--YWSILSCPFEAV-APGSKIVVTTRNL-G--------VTVNMGADPAYQLKELSNDDCLCV 321 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~~--~~~~l~~~~~~~-~~~s~iivTtr~~-~--------~~~~~~~~~~~~l~~l~~~~~~~l 321 (1399)
++ .-+||+||++..... ..+.+...+... ..+..+|+|+... . +..++.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 348899999653211 112222222111 2345677777642 1 222333334689999999999999
Q ss_pred HHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 322 LTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
+.+.+... ... -.+++...|++++.|..-.+.-+
T Consensus 277 l~~~~~~~-~~~---l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 277 LQKKAEEE-GLE---LPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHc-CCC---CCHHHHHHHHHhcCCCHHHHHHH
Confidence 99887432 211 22677888999999887654433
No 145
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.80 E-value=5.1e-06 Score=88.43 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=52.3
Q ss_pred CCCCcchhhH----HhhhcCCCCcccEEEecCCcc----cccCcc-------ccCccccceeeccCcccc-ccch----h
Q 036079 529 NYEGNYLAWS----VLQMLLNLPRLRVFSLHGYCV----SKLPNE-------IGNLKHLRFLNLSGTEIQ-ILPE----S 588 (1399)
Q Consensus 529 ~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~n~i----~~lp~~-------~~~l~~L~~L~Ls~n~i~-~lp~----~ 588 (1399)
++++|++... +-+.+.+-+.||..++++--- ..+|+. +-..++|++||||.|.+. .-+. -
T Consensus 36 ~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l 115 (382)
T KOG1909|consen 36 DLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL 115 (382)
T ss_pred eccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHH
Confidence 3567776433 333477888999999986432 244543 456679999999999877 3333 3
Q ss_pred hhccccccEEEcCCcc
Q 036079 589 INSLYNLHTILLENCH 604 (1399)
Q Consensus 589 i~~L~~L~~L~L~~~~ 604 (1399)
+.+++.|++|.|.+|.
T Consensus 116 l~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCG 131 (382)
T ss_pred HHhccCHHHHhhhcCC
Confidence 5678889999998874
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.79 E-value=6.7e-05 Score=95.71 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc------CCceEE-EEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH------FEIKAW-TCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~w-v~~~~~~~~~ 221 (1399)
..++||+.+++++++.|... ...-+.++|++|+||||+|+.++.. +... ....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 46899999999999999653 2234569999999999999999873 2111 122333 22111
Q ss_pred HHHHHHHHhccCCCCCCcccH-HHHHHHHHHHh-cCCeEEEEEcccCccCh-----hhHh--hhcccCCCCCCC-cEEEE
Q 036079 222 RISKSILNSVASDQCTDKDDL-NLLQEKLKKQL-SGKKFLLVLDDVWNESY-----NYWS--ILSCPFEAVAPG-SKIVV 291 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~-~~~~~~l~~~l-~~k~~LiVlDdv~~~~~-----~~~~--~l~~~~~~~~~~-s~iiv 291 (1399)
+..... ...+. +.+.+.+.+.- .+++.++++|+++.... ...+ .+.. |....| -++|-
T Consensus 254 ---------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk--p~l~~G~l~~Ig 321 (852)
T TIGR03345 254 ---------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK--PALARGELRTIA 321 (852)
T ss_pred ---------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhh--HHhhCCCeEEEE
Confidence 000000 11111 22222222222 25789999999865311 1111 1221 222333 45666
Q ss_pred ecCChhhhhc-------cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 292 TTRNLGVTVN-------MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 292 Ttr~~~~~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
||...+.... ....+.+.+++++.+++.++++...-.-.......-..++...+++.+.+.
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 6654322111 112247999999999999997654421111111111244455555555443
No 147
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00035 Score=78.72 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=66.3
Q ss_pred CCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-hhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCC
Q 036079 255 GKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-VTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDF 332 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 332 (1399)
+++-++|+|+++.........+...+.....++.+|+||.+.. +... .+....+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 4445567899998887777777777766556777777777643 2222 222356999999999999998765311 1
Q ss_pred CCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 333 SMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.++.+..++..++|.|.....+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1344567789999999765544
No 148
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00013 Score=85.03 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=97.6
Q ss_pred cCCccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
..+++.|+++.++++.+.+...-. -+-..++.|.++|++|+|||++|+++++. .... |+.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 345789999999999887632100 01234567899999999999999999973 2222 222211
Q ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCcc-----------ChhhHhhhcccC---C--C
Q 036079 220 VFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNE-----------SYNYWSILSCPF---E--A 282 (1399)
Q Consensus 220 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~-----------~~~~~~~l~~~~---~--~ 282 (1399)
.+ +.....+ .. ......+.+. -...+.+|++||++.. +...+..+...+ . .
T Consensus 199 -~~----l~~~~~g------~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 -SE----LVQKFIG------EG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred -HH----HhHhhcc------ch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 11 1111111 11 1122222222 2356789999999652 111111121111 1 1
Q ss_pred CCCCcEEEEecCChhhhhc-c---C-CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 283 VAPGSKIVVTTRNLGVTVN-M---G-ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 283 ~~~~s~iivTtr~~~~~~~-~---~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
...+.+||.||........ + + -...+.+.+.+.++..++|+.+..+.. ....- ....+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~----~~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDV----DLEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcC----CHHHHHHHcCCC
Confidence 1235677777776432221 1 1 123588999999999999998764321 11111 235567777774
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.75 E-value=0.00046 Score=76.63 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=71.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCe
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKK 257 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 257 (1399)
-+.++|++|+|||++|+.++......+.....-|+.++. .+ ++..+.+.. . ......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~---~---~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT---A---PKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc---h---HHHHHHHHHc---cC
Confidence 688999999999999988875321111111122444432 12 222222211 1 1222233322 33
Q ss_pred EEEEEcccCcc---------ChhhHhhhcccCCCCCCCcEEEEecCChhhhhcc--C------CCCceecCCCChhhHHH
Q 036079 258 FLLVLDDVWNE---------SYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVNM--G------ADPAYQLKELSNDDCLC 320 (1399)
Q Consensus 258 ~LiVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~~--~------~~~~~~l~~l~~~~~~~ 320 (1399)
-+|+||++... ....++.+...+.....+.+||+++......... . -...+++++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999632 1222344444444444566777776543221110 1 02358999999999999
Q ss_pred HHHHhhc
Q 036079 321 VLTQISL 327 (1399)
Q Consensus 321 l~~~~~~ 327 (1399)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9888763
No 150
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.75 E-value=0.00077 Score=70.16 Aligned_cols=127 Identities=25% Similarity=0.260 Sum_probs=72.7
Q ss_pred cccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 145 LVNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 145 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
.+.-+.++|.|..++.+++-...-- .+....-+.+||..|+|||++++++.+....++ .+ -|.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH-------
Confidence 4456689999999988886554322 233456778899999999999999987322221 11 1111111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc-cChhhHhhhcccCC----CCCCCcEEEEecCChhhh
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN-ESYNYWSILSCPFE----AVAPGSKIVVTTRNLGVT 299 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~-~~~~~~~~l~~~~~----~~~~~s~iivTtr~~~~~ 299 (1399)
+-.++..+.+.++. +..||+|++||+.= ........+...+. ..+.+..|..||-.+.+.
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22333444444442 35799999999832 22233444443332 223444555566555443
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.7e-05 Score=57.78 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=28.9
Q ss_pred cccceeeccCccccccchhhhccccccEEEcCCccccccch
Q 036079 570 KHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLC 610 (1399)
Q Consensus 570 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 610 (1399)
++|++|++++|+|+.+|+.+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888877888888888888885 454443
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00081 Score=79.27 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=89.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
...+.|+|+.|+|||+||+++++.. ...-..+++++ ..++...+...+... . ...+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~------~----~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG------E----MQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc------h----HHHHHHHcc-
Confidence 4568899999999999999999843 22223345554 233444444444321 1 122333333
Q ss_pred CeEEEEEcccCccChhh--HhhhcccCCC-CCCCcEEEEecCCh---------hhhhccCCCCceecCCCChhhHHHHHH
Q 036079 256 KKFLLVLDDVWNESYNY--WSILSCPFEA-VAPGSKIVVTTRNL---------GVTVNMGADPAYQLKELSNDDCLCVLT 323 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~--~~~l~~~~~~-~~~~s~iivTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l~~ 323 (1399)
+.-++++||++...... .+++...+.. ...|..||+||... .+..++.....+++++++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34488889986532211 1222222210 11355788888542 222334444578999999999999999
Q ss_pred HhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 324 QISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
+.+... .... .+++..-|++.+.|.-
T Consensus 282 ~k~~~~-~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEAL-SIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHc-CCCC---CHHHHHHHHHhcCCCH
Confidence 887432 2222 2566677777777653
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00054 Score=81.11 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=95.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccC-C-ceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHF-E-IKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
...+.|+|.+|+|||.||+++++. ..... . .++|++. .+...++...+... ..+ .+.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~----~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLN----EFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHH----HHHHHH
Confidence 445999999999999999999984 33322 2 3556653 44555565555321 122 223333
Q ss_pred cCCeEEEEEcccCccCh-hhH-hhhcccCCC-CCCCcEEEEecC-Chh--------hhhccCCCCceecCCCChhhHHHH
Q 036079 254 SGKKFLLVLDDVWNESY-NYW-SILSCPFEA-VAPGSKIVVTTR-NLG--------VTVNMGADPAYQLKELSNDDCLCV 321 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~-~~~-~~l~~~~~~-~~~~s~iivTtr-~~~--------~~~~~~~~~~~~l~~l~~~~~~~l 321 (1399)
+.+.-+||+||++.... ..+ +.+...+.. ...|..||+||. .+. +..++.....+++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 34456899999964311 111 122222211 123456888875 322 112333445688999999999999
Q ss_pred HHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 322 LTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
+++.+... .... .+++...|++++.|.--.+.-+
T Consensus 272 L~~~~~~~-~~~l---~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 272 ARKMLEIE-HGEL---PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHhc-CCCC---CHHHHHHHHhccccCHHHHHHH
Confidence 99887432 2222 2577888999998875544433
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00067 Score=76.08 Aligned_cols=198 Identities=14% Similarity=0.096 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch-------------hccCCceEEEEeC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-------------QRHFEIKAWTCVS 215 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~ 215 (1399)
.+++|.+...+.+...+... .-.+...++|+.|+||+++|..++...-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 35899999999999998542 23478999999999999999888753211 1122333444211
Q ss_pred CCCCHHHHHHHHHHhccCC-CCCCcccHHHHHHHHHHHh-----cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEE
Q 036079 216 EEFDVFRISKSILNSVASD-QCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKI 289 (1399)
Q Consensus 216 ~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~l-----~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 289 (1399)
...+-..+-...++..+.. .....-..++.. .+.+.+ .+++-++|+|+++.........+...+...+ .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0000000001111111100 000111122222 233333 3567799999998877766776666665444 4455
Q ss_pred EEecCC-hhhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 290 VVTTRN-LGVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 290 ivTtr~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
|++|.+ ..+... .+....+++.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 555444 333222 22335799999999999999988642111 01113578899999997665443
No 155
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.69 E-value=0.00051 Score=87.85 Aligned_cols=52 Identities=33% Similarity=0.461 Sum_probs=39.5
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+++|.+..++++.+++.........+.+++.++|++|+|||++|+.++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999998775322112234458999999999999999999973
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.68 E-value=0.00043 Score=83.04 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=94.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCC--ceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 252 (1399)
....+.|+|++|+|||+||+++++. ....+. .++|++. .+...++...+... ..+ .+.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~----~~~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TME----EFKEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHH----HHHHH
Confidence 3456899999999999999999984 333332 3445543 23344444444321 112 22333
Q ss_pred hcCCeEEEEEcccCccChh--hHhhhcccCCC-CCCCcEEEEecCChh---------hhhccCCCCceecCCCChhhHHH
Q 036079 253 LSGKKFLLVLDDVWNESYN--YWSILSCPFEA-VAPGSKIVVTTRNLG---------VTVNMGADPAYQLKELSNDDCLC 320 (1399)
Q Consensus 253 l~~k~~LiVlDdv~~~~~~--~~~~l~~~~~~-~~~~s~iivTtr~~~---------~~~~~~~~~~~~l~~l~~~~~~~ 320 (1399)
++ +.-+||+||++..... ..+.+...+.. ...|..||+|+.... +..++.....+++++.+.++-.+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 33 3448999999653211 11222222211 123445788776532 22344444578999999999999
Q ss_pred HHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHH
Q 036079 321 VLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKT 358 (1399)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 358 (1399)
++.+.+... ... -.+++...|+++++|..-.+.-
T Consensus 288 il~~~~~~~-~~~---l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 288 ILKKKAEEE-GID---LPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHHHc-CCC---CCHHHHHHHHcCcCCCHHHHHH
Confidence 999987432 111 2357788999999998765443
No 157
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.67 E-value=0.0012 Score=83.37 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=88.0
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
+.+.+|.+..+++|++++............++.++|++|+||||+|+.++.. ....| +-++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4568999999999999887422112234568999999999999999999962 22222 223344444443332111
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhh----HhhhcccCCCC---------------CCCcE
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNY----WSILSCPFEAV---------------APGSK 288 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~----~~~l~~~~~~~---------------~~~s~ 288 (1399)
-...+. ....+.+.+.+. ....-+++||.++...... .+.+...+.+. -.+.-
T Consensus 396 ~~~~g~-------~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGS-------MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCC-------CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 111111 111233333322 2234478999996643221 12232222211 12333
Q ss_pred EEEecCChhhhhcc-CCCCceecCCCChhhHHHHHHHhh
Q 036079 289 IVVTTRNLGVTVNM-GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 289 iivTtr~~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
+|.|+....+...+ .....+++.+++.+|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455432221111 112357888999888877777654
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.66 E-value=0.00028 Score=90.78 Aligned_cols=156 Identities=20% Similarity=0.150 Sum_probs=84.0
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc---hhccC-CceEEEEeCCCCCHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHF-EIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 224 (1399)
..++||++++++++++|... ...-+.++|++|+|||++|+.++.... +.... ...+|.- +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH-
Confidence 35899999999999999653 223457999999999999999987321 11111 2344521 11111
Q ss_pred HHHHHhccCCCCCCcccHHH-HHHHHHHHhcCCeEEEEEcccCccCh-------hhHhhhcccCCCCCCCcEEEEecCCh
Q 036079 225 KSILNSVASDQCTDKDDLNL-LQEKLKKQLSGKKFLLVLDDVWNESY-------NYWSILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~LiVlDdv~~~~~-------~~~~~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
+ .+.. ...+.++ +...+.+.-+.++.++++|+++..-. .+...+..+.... ..-++|-+|...
T Consensus 247 ---~---ag~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ 317 (821)
T CHL00095 247 ---L---AGTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLD 317 (821)
T ss_pred ---h---ccCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHH
Confidence 1 1111 1112222 22333333345789999999953110 0011111111111 124566666554
Q ss_pred hhhhc-------cCCCCceecCCCChhhHHHHHHHh
Q 036079 297 GVTVN-------MGADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 297 ~~~~~-------~~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
+.... ......+.+...+.++...+++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43211 112245788888888888887653
No 159
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=2.4e-06 Score=98.65 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=40.2
Q ss_pred cceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCcccccCCcc-cccccccCccceEE
Q 036079 572 LRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDSLEEMPKG-FGKLTCLLTLCTFV 650 (1399)
Q Consensus 572 L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~l~~ 650 (1399)
|.+-+.++|++..+.+++.-++.|+.|||++| ..... ..+..|++|++|||++|. +..+|.- ...+. |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhh-HHHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 44445555555555555555666666666663 33333 245556666666666665 5555531 22222 55555544
Q ss_pred eccC
Q 036079 651 VGKD 654 (1399)
Q Consensus 651 ~~~~ 654 (1399)
|...
T Consensus 242 N~l~ 245 (1096)
T KOG1859|consen 242 NALT 245 (1096)
T ss_pred cHHH
Confidence 4433
No 160
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00066 Score=80.03 Aligned_cols=166 Identities=21% Similarity=0.198 Sum_probs=94.4
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
+.+.+|-++..++|+++|.-......-+.+++++||++|||||+|++.++. .....| +-+++++-.|..++--.=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 556899999999999999643322344568999999999999999999997 444455 334455555554442110
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh----hHhhhcccCCCCC-------------CCcEEE
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN----YWSILSCPFEAVA-------------PGSKIV 290 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~----~~~~l~~~~~~~~-------------~~s~ii 290 (1399)
-.. -+.-+..+.+.+++. +.+.=+++||.++....+ .-.++...+.+.. .=|.|+
T Consensus 397 RTY-------IGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTY-------IGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccc-------cccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000 111123344444433 457779999999653211 1112222221111 123443
Q ss_pred -EecCCh-h-hhh-ccCCCCceecCCCChhhHHHHHHHhh
Q 036079 291 -VTTRNL-G-VTV-NMGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 291 -vTtr~~-~-~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
|||-+. + +.. -+....++++.+.+++|=.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444431 1 111 11222468889999988877777664
No 161
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0024 Score=66.08 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=108.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeC-CCCCHHHHHHHHHHhccCCCCCC-cccHHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS-EEFDVFRISKSILNSVASDQCTD-KDDLNLLQEKLKK 251 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~l~~ 251 (1399)
++.+++.|+|.-|.|||.+++++..... + +.++-+.+. ...+...+...++..+....... ....++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 3557999999999999999995543211 1 112223333 34466778888888887632211 1122333344444
Q ss_pred Hh-cCCe-EEEEEcccCccChhhHhhhcccCCCCCCCc---EEEEecCCh-------hhhhccCC-CCc-eecCCCChhh
Q 036079 252 QL-SGKK-FLLVLDDVWNESYNYWSILSCPFEAVAPGS---KIVVTTRNL-------GVTVNMGA-DPA-YQLKELSNDD 317 (1399)
Q Consensus 252 ~l-~~k~-~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s---~iivTtr~~-------~~~~~~~~-~~~-~~l~~l~~~~ 317 (1399)
.. +++| ..+++||+++......+.+.....-...++ +|+..-..+ .+...... ... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4677 999999998876666665543322111121 233333211 11111111 123 8999999999
Q ss_pred HHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHh
Q 036079 318 CLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGS 361 (1399)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 361 (1399)
...+++.+..+... ..+--..+....|..+..|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99998877654422 12222356778899999999999988864
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.59 E-value=0.00056 Score=88.35 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=83.4
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc----cCCceEEEEeCCCCCHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 224 (1399)
..++||+.+++++++.|... ...-+.++|++|+|||++|+.++....... .....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~-- 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGA-- 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHH--
Confidence 35999999999999999653 224556899999999999999987321110 012233321 1111
Q ss_pred HHHHHhccCCCCCCcccHHH-HHHHHHHHhc-CCeEEEEEcccCccC--------hhhHhhhcccCCCCCCCcEEEEecC
Q 036079 225 KSILNSVASDQCTDKDDLNL-LQEKLKKQLS-GKKFLLVLDDVWNES--------YNYWSILSCPFEAVAPGSKIVVTTR 294 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~-~k~~LiVlDdv~~~~--------~~~~~~l~~~~~~~~~~s~iivTtr 294 (1399)
++. +.. ...+.+. +...+.+.-+ +++.+|++|+++... .+.-+.+. +....+ .-++|-+|.
T Consensus 240 --l~a---~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk-~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 --LIA---GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK-PALARG-ELHCIGATT 310 (852)
T ss_pred --Hhh---cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc-hhhhcC-ceEEEEeCc
Confidence 110 000 0112222 2222322222 468999999996421 11112222 222211 234555555
Q ss_pred Chhhhhc-------cCCCCceecCCCChhhHHHHHHHhh
Q 036079 295 NLGVTVN-------MGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 295 ~~~~~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
..+.... ....+.+.+...+.++..++++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4433111 1122457888889999999987654
No 163
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=1.2e-05 Score=99.26 Aligned_cols=63 Identities=27% Similarity=0.572 Sum_probs=33.4
Q ss_pred CCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc---ccccCccceeeeccccCc
Q 036079 1055 SRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR---IQLAPSLKRLIINSCHNL 1117 (1399)
Q Consensus 1055 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l 1117 (1399)
.+|+.|+++.|..+++.........|++|+.|.+.+|..+++..- ...+++|++|++++|..+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 455555555555555555554444456666666555555444322 234555666666655544
No 164
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=7.4e-06 Score=74.72 Aligned_cols=94 Identities=24% Similarity=0.275 Sum_probs=73.4
Q ss_pred hhhcCCCCcccEEEecCCcccccCcccc-CccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCc
Q 036079 540 LQMLLNLPRLRVFSLHGYCVSKLPNEIG-NLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIK 618 (1399)
Q Consensus 540 ~~~~~~l~~Lr~L~L~~n~i~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 618 (1399)
+..+....+|...+|++|.+..+|..|. .++.++.|+|++|.|+.+|..+..++.|+.|+++.| .+...|..|..|.+
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIK 124 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHh
Confidence 3346777788888888888888887764 445888888888888888888888888888888884 56777788877888
Q ss_pred ccEEEcCCCcccccCCc
Q 036079 619 LHHLRNSNVDSLEEMPK 635 (1399)
Q Consensus 619 L~~L~l~~n~~~~~lp~ 635 (1399)
|-.|+..+|. ...+|.
T Consensus 125 l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEIDV 140 (177)
T ss_pred HHHhcCCCCc-cccCcH
Confidence 8888887776 555553
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00045 Score=86.31 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=85.5
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh---cc-CCceEEEEeCCCCCHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---RH-FEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~ 224 (1399)
+.++||+.+++++++.|... ...-+.++|++|+|||++|+.++...... .. .++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 35999999999999999753 22345689999999999999998632111 01 13444421 111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCcc--------ChhhHhhhcccCCCCCCCcEEEEecCC
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNE--------SYNYWSILSCPFEAVAPGSKIVVTTRN 295 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~--------~~~~~~~l~~~~~~~~~~s~iivTtr~ 295 (1399)
.++ .+.. ...+.+...+.+.+.+ +.++.+|++|+++.. ...+...+..++... ..-+||-+|..
T Consensus 252 -~ll---aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 252 -SLL---AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred -HHh---cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 111 0110 1112222222232222 356789999999642 111121122222222 23345555554
Q ss_pred hhhhhc-------cCCCCceecCCCChhhHHHHHHHhh
Q 036079 296 LGVTVN-------MGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 296 ~~~~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
.+.... ....+.+.+++.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332111 1122468999999999999998654
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00053 Score=83.29 Aligned_cols=200 Identities=13% Similarity=0.151 Sum_probs=100.5
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC---CCCHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE---EFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~ 224 (1399)
-.+++|-++.++++..|+..... .....+++.|+|++|+||||+++.++... .++..-|++... ..+...+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~ 157 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVT 157 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccc
Confidence 45799999999999999865432 22344689999999999999999999732 123333422110 00111111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHH---H----hcCCeEEEEEcccCcc---ChhhHhhhcc-cCCCCCCCcEEEEec
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKK---Q----LSGKKFLLVLDDVWNE---SYNYWSILSC-PFEAVAPGSKIVVTT 293 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~---~----l~~k~~LiVlDdv~~~---~~~~~~~l~~-~~~~~~~~s~iivTt 293 (1399)
..+..++..... .............. . ..+++.+|++|++... ....+..+.. .+...+.-.-|+|||
T Consensus 158 ~s~~~~~~~~~s-~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 158 LSLESCFSNFQS-QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred hhhhhccccccc-hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 222222211110 11112222222211 1 1357789999999332 1123334433 232233333455566
Q ss_pred CChh---------hh------hccC---CCCceecCCCChhhHHHHHHHhhcCCCCCCCCh---hhHHHHHHHHHHcCCC
Q 036079 294 RNLG---------VT------VNMG---ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQ---SLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 294 r~~~---------~~------~~~~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~g~ 352 (1399)
-... .. ..+- ....+.+.|+...+..+.+.+.+-......... ...++...|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 3211 10 0110 113478999999997777776653221100000 1135666777777774
Q ss_pred h
Q 036079 353 P 353 (1399)
Q Consensus 353 P 353 (1399)
-
T Consensus 317 i 317 (637)
T TIGR00602 317 I 317 (637)
T ss_pred H
Confidence 3
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.0012 Score=69.67 Aligned_cols=137 Identities=12% Similarity=0.173 Sum_probs=78.7
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEE----eCCC-----CC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTC----VSEE-----FD 219 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~----~~~~-----~~ 219 (1399)
..+.+|......+..++.. ..++.++|++|+|||+||.+++.+.-..+.|+.++.+. +++. .+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4477899999999998853 24899999999999999999886432234454333321 1110 12
Q ss_pred HHHHH----HHHHHhccCCCCCCcccHHHHHH--------HHHHHhcCCeE---EEEEcccCccChhhHhhhcccCCCCC
Q 036079 220 VFRIS----KSILNSVASDQCTDKDDLNLLQE--------KLKKQLSGKKF---LLVLDDVWNESYNYWSILSCPFEAVA 284 (1399)
Q Consensus 220 ~~~~~----~~il~~l~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LiVlDdv~~~~~~~~~~l~~~~~~~~ 284 (1399)
..+-+ ..+...+..-. .....+.... .-..+++++.+ +||+|++...+..+...+... .+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g 201 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LG 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cC
Confidence 22211 22222221100 0011111100 00235667655 999999988776555555443 46
Q ss_pred CCcEEEEecCChhh
Q 036079 285 PGSKIVVTTRNLGV 298 (1399)
Q Consensus 285 ~~s~iivTtr~~~~ 298 (1399)
.+|++|+|--..++
T Consensus 202 ~~sk~v~~GD~~Qi 215 (262)
T PRK10536 202 ENVTVIVNGDITQC 215 (262)
T ss_pred CCCEEEEeCChhhc
Confidence 89999999876555
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0023 Score=71.35 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=100.9
Q ss_pred hhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCC-----ceEEEEeCCCCCHHHHHHHHHHh
Q 036079 156 KDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-----IKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 156 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
...+++...+.. +.-...+.++|+.|+||+++|..++...-...... +.-|+..+..+|...+.
T Consensus 11 ~~~~~l~~~~~~-----~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------ 79 (319)
T PRK08769 11 RAYDQTVAALDA-----GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------ 79 (319)
T ss_pred HHHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------
Confidence 345566666643 23456789999999999999988875321111000 00011111111110000
Q ss_pred ccCCCC----CCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhc
Q 036079 231 VASDQC----TDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVN 301 (1399)
Q Consensus 231 l~~~~~----~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~ 301 (1399)
...+.. ...-.++++.+..... ..+++-++|+|+++......-..+...+.....++.+|++|... .+...
T Consensus 80 ~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 80 FIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred cCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchH
Confidence 000000 0011233322222111 12567799999998877666666666666556677777777653 33222
Q ss_pred -cCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 302 -MGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 302 -~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
.+....+.+.+.+.+++.+.+.... . + ++.+..++..++|.|+....+.
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~~---~----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQG---V----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHcC---C----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 2223568899999999998887531 1 1 2335678999999998765543
No 169
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.50 E-value=0.00046 Score=80.34 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|.+..++++.+++.-.-. -+-...+.+.++|++|+|||++|+++++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 4578999999888887742100 01234567889999999999999999983 33333 222111
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC-----------hh---hHhhhcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES-----------YN---YWSILSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~-----------~~---~~~~l~~~~~--~~~~ 285 (1399)
++ .....+ .....+...+.......+.+|+||+++... .. ..-.+...+. ....
T Consensus 252 eL----~~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 EL----IQKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hh----hhhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 111111 111122223333334678899999984310 00 0011111111 1123
Q ss_pred CcEEEEecCChhhhhcc-----CCCCceecCCCChhhHHHHHHHhh
Q 036079 286 GSKIVVTTRNLGVTVNM-----GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
+.+||.||...+..... .-...+++...+.++..++|..+.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 56788888765443221 112358899999999999998765
No 170
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=3.3e-05 Score=70.60 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred ccEEEecCCcccccCcc---ccCccccceeeccCccccccchhhhc-cccccEEEcCCccccccchhhhcccCcccEEEc
Q 036079 549 LRVFSLHGYCVSKLPNE---IGNLKHLRFLNLSGTEIQILPESINS-LYNLHTILLENCHRLKKLCKDMGNLIKLHHLRN 624 (1399)
Q Consensus 549 Lr~L~L~~n~i~~lp~~---~~~l~~L~~L~Ls~n~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 624 (1399)
+-.+||+.|.+-.+++. +.+..+|...+|++|.+...|+.|.. .+.+++|++++ +.+..+|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccc
Confidence 44456666665555433 34455666667777777777666543 33666777776 456667777777777777777
Q ss_pred CCCcccccCCcccccccccCccceEEe
Q 036079 625 SNVDSLEEMPKGFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 625 ~~n~~~~~lp~~~~~L~~L~~L~l~~~ 651 (1399)
+.|. +...|.-|..|.+|-.|+.-.+
T Consensus 108 ~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 7766 5556666666666666655444
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=0.0002 Score=70.00 Aligned_cols=70 Identities=26% Similarity=0.195 Sum_probs=41.2
Q ss_pred EEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC-Ce
Q 036079 179 ISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG-KK 257 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~ 257 (1399)
|.|+|++|+||||+|+.+++.. . + ..+.++.+.-.+. ........+.+.+.+.-+. ++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~--~-~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--G--F-PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--T--S-EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc--c--c-ccccccccccccc----------------cccccccccccccccccccccc
Confidence 5799999999999999999842 2 1 1233433221100 0222333344444443333 48
Q ss_pred EEEEEcccCccC
Q 036079 258 FLLVLDDVWNES 269 (1399)
Q Consensus 258 ~LiVlDdv~~~~ 269 (1399)
.+|++||++...
T Consensus 60 ~vl~iDe~d~l~ 71 (132)
T PF00004_consen 60 CVLFIDEIDKLF 71 (132)
T ss_dssp EEEEEETGGGTS
T ss_pred eeeeeccchhcc
Confidence 999999996643
No 172
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.48 E-value=0.0016 Score=76.57 Aligned_cols=209 Identities=15% Similarity=0.097 Sum_probs=129.5
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc---hhccCC--ceEEEEeCCCCCHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHFE--IKAWTCVSEEFDVFR 222 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~~~f~--~~~wv~~~~~~~~~~ 222 (1399)
+..+-+||.+..+|-+.+...=. .++..+.+-|.|.+|+|||+.+..|.+... .++.-+ ..+.++.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 44577999999999998875432 224456999999999999999999987432 122222 245566666678999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhc-----CCeEEEEEcccCccChhhHhhhcccCCC-CCCCcEEEEecCC-
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLS-----GKKFLLVLDDVWNESYNYWSILSCPFEA-VAPGSKIVVTTRN- 295 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LiVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtr~- 295 (1399)
++..|+..+.+....... ..+.+..+.. .+.++|++|+++..-....+.+...|.| ..+++|++|.+=.
T Consensus 474 ~Y~~I~~~lsg~~~~~~~----al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDA----ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHhcccCcccHHH----HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999999876532222 2333333332 4678999998744211122333344443 3467776554321
Q ss_pred -hh---------hhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHHHhhh
Q 036079 296 -LG---------VTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLL 363 (1399)
Q Consensus 296 -~~---------~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 363 (1399)
-+ +...++ ...+.++|.++++-.++...+..+.. .......+-++++|+.-.|..-.|+.+.-++.
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11 112222 23588899999998888887764442 22334455566777766666666666655444
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0021 Score=78.39 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=77.1
Q ss_pred CCccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC---CceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---EIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~ 221 (1399)
...++|-+..++.+.+.+..... ++....++...+|+.|||||.||++++.. -| +..+-+ |+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMS 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chH
Confidence 34699999999999999976432 13344568888999999999999999862 23 222333 333
Q ss_pred HHHH--HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeE-EEEEcccCccChhhHhhhcccCCCC
Q 036079 222 RISK--SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKF-LLVLDDVWNESYNYWSILSCPFEAV 283 (1399)
Q Consensus 222 ~~~~--~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LiVlDdv~~~~~~~~~~l~~~~~~~ 283 (1399)
+... .+-+-++.++. --.-++ -..+.+..+.++| +|.||++...+++-.+.+...+..+
T Consensus 559 Ey~EkHsVSrLIGaPPG--YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 559 EYMEKHSVSRLIGAPPG--YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHHhCCCCC--Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 3332 23333343321 111111 2345556677888 8889999988887777776666543
No 174
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0017 Score=77.77 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=94.1
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccC--CceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
..+.|+|..|+|||.|++++++. ....+ ..++|++ ..++..++...+... .. ..+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~------~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG------KG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc------cH----HHHHHHhh
Confidence 45899999999999999999984 32222 2345554 334444444443221 11 12333333
Q ss_pred CCeEEEEEcccCccCh-hhH-hhhcccCCC-CCCCcEEEEecCCh---------hhhhccCCCCceecCCCChhhHHHHH
Q 036079 255 GKKFLLVLDDVWNESY-NYW-SILSCPFEA-VAPGSKIVVTTRNL---------GVTVNMGADPAYQLKELSNDDCLCVL 322 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~-~~~-~~l~~~~~~-~~~~s~iivTtr~~---------~~~~~~~~~~~~~l~~l~~~~~~~l~ 322 (1399)
+ .=+|||||++.... ..| +.+...+.. ...|..|||||+.. .+...+.....+++++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 34788999965422 112 222222211 12355688888752 23344555567999999999999999
Q ss_pred HHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 323 TQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.+++.. ..... -++++.-|++++.+..-.|.-+
T Consensus 456 ~kka~~-r~l~l---~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 456 RKKAVQ-EQLNA---PPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHh-cCCCC---CHHHHHHHHHhccCCHHHHHHH
Confidence 988743 22222 2577788888887765444433
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.46 E-value=0.001 Score=85.50 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++||+.+++++++.|... ...-+.++|++|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999653 2235669999999999999999873
No 176
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=5.2e-05 Score=78.64 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=50.8
Q ss_pred CCCcccEEEecCCccccc---CccccCccccceeeccCccccccchhh-hccccccEEEcCCccc-cccchhhhcccCcc
Q 036079 545 NLPRLRVFSLHGYCVSKL---PNEIGNLKHLRFLNLSGTEIQILPESI-NSLYNLHTILLENCHR-LKKLCKDMGNLIKL 619 (1399)
Q Consensus 545 ~l~~Lr~L~L~~n~i~~l---p~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L 619 (1399)
.++.++.|||.+|.|+.- -.-+.+|++|++|+|+.|++..--.++ -.+.+|++|-|.+... .......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 456777888888877643 334567788888888887765221222 3456777777766321 12333345666677
Q ss_pred cEEEcCCCc
Q 036079 620 HHLRNSNVD 628 (1399)
Q Consensus 620 ~~L~l~~n~ 628 (1399)
+.|.++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777776664
No 177
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=7e-06 Score=94.91 Aligned_cols=111 Identities=24% Similarity=0.196 Sum_probs=78.5
Q ss_pred hhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcc
Q 036079 540 LQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKL 619 (1399)
Q Consensus 540 ~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 619 (1399)
..++.-++.|+.|+|++|++.... .+..+++|++|||++|.+..+|.-=..-.+|+.|++++| .+..+ .+|.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhh-hhHHhhhhh
Confidence 344677788888888888888774 678888888888888888888753222233888888884 56666 568888888
Q ss_pred cEEEcCCCcccccCC--cccccccccCccceEEeccC
Q 036079 620 HHLRNSNVDSLEEMP--KGFGKLTCLLTLCTFVVGKD 654 (1399)
Q Consensus 620 ~~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~ 654 (1399)
+.||+++|- +.... .-++.|..|+.|.+-+|...
T Consensus 257 ~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888888886 32222 12556667777777776654
No 178
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0038 Score=69.61 Aligned_cols=177 Identities=12% Similarity=0.031 Sum_probs=100.9
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc-------CCceEEEEeCCCCCHHHHHHHHHH
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-------FEIKAWTCVSEEFDVFRISKSILN 229 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-------f~~~~wv~~~~~~~~~~~~~~il~ 229 (1399)
..+++.+.+.. +.-...+.++|+.|+||+++|+.++...--... ....-++..+..+|...+
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 34556666542 234568899999999999999998753211100 000001111111111100
Q ss_pred hccCCCCCCcccHHHHHHHHHHHh-----cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhh-hcc
Q 036079 230 SVASDQCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVT-VNM 302 (1399)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~-~~~ 302 (1399)
........-..+++.+ +.+.+ .+++-++|+|+++.........+...+...+.++.+|++|.++ .+. .-.
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000001122333322 22222 3456689999998888777777777777666777777666654 332 223
Q ss_pred CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 303 GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
+....+.+.+++.+++.+.+.... . . .+..+++.++|.|+....+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG---I----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC---C----c-----hHHHHHHHcCCCHHHHHHH
Confidence 333568999999999999887532 1 0 1346788999999877555
No 179
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.37 E-value=0.002 Score=76.17 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=89.0
Q ss_pred CccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc---cCCceEEEEeCCCC
Q 036079 149 AKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---HFEIKAWTCVSEEF 218 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~ 218 (1399)
.++.|.+..++++.+.+...-. .+-..++-+.++|++|+|||++|+++++...... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999998887642100 0122456689999999999999999998432110 1122344444332
Q ss_pred CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccCh-------hh-----HhhhcccCCCC--
Q 036079 219 DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNESY-------NY-----WSILSCPFEAV-- 283 (1399)
Q Consensus 219 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~~-------~~-----~~~l~~~~~~~-- 283 (1399)
+++....+. .......+.+..++.. .+++++|+||+++..-. .+ ...+...+...
T Consensus 261 -------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 -------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred -------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111111110 1111122222222222 35789999999964210 00 11222222211
Q ss_pred CCCcEEEEecCChhhhhc-c---CC-CCceecCCCChhhHHHHHHHhh
Q 036079 284 APGSKIVVTTRNLGVTVN-M---GA-DPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 284 ~~~s~iivTtr~~~~~~~-~---~~-~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
..+..||.||........ + +. ...++++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 134445556655433221 1 11 2358999999999999999876
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.36 E-value=0.0021 Score=64.58 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
-.++||-++.++++.-.-.+ +..+-+.|.||+|+||||-+..+++..--...-+.+.
T Consensus 26 l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL----------------- 82 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL----------------- 82 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh-----------------
Confidence 34699999999988776643 3556789999999999998888876211011111222
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhc-------CCeEEEEEcccCccChhhHhhhccc
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLS-------GKKFLLVLDDVWNESYNYWSILSCP 279 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~-------~k~~LiVlDdv~~~~~~~~~~l~~~ 279 (1399)
++..+ +....+-....++.+.+ ++.-.||||.++.......+.+.+.
T Consensus 83 --ELNAS---deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 83 --ELNAS---DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred --hccCc---cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 22222 22334444445544433 4556899999988765555555443
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0026 Score=72.43 Aligned_cols=164 Identities=9% Similarity=0.040 Sum_probs=90.5
Q ss_pred cccc-chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 150 KVYG-REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 150 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++| -+..++.+...+.. +.-.....++|+.|+||||+|+.+++..--....... .+. .-..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~-----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg----~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK-----NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCG----TCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCC----cCHHHHHHh
Confidence 3566 56667777777753 2345677999999999999999987532111100000 000 000000000
Q ss_pred HhccC-----CCCCCcccHHHHHHHHHHH----hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-h
Q 036079 229 NSVAS-----DQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-V 298 (1399)
Q Consensus 229 ~~l~~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~ 298 (1399)
..-.. .........+++.+.+... ..+++-++|+|+++.........+...+...+.++.+|++|..+. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 0000111223333322221 235566899999988777667777777776667777777776533 2
Q ss_pred hhc-cCCCCceecCCCChhhHHHHHHHh
Q 036079 299 TVN-MGADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 299 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
... .+....+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 222 222356999999999998888653
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0049 Score=68.89 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=101.3
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC---C---c--eEEEEeCCCCCHHHHHHHHH
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---E---I--KAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f---~---~--~~wv~~~~~~~~~~~~~~il 228 (1399)
....+...+.. +.-...+.++|+.|+||+++|+.++...--.... . | .-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQ-----GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHc-----CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 34556666643 2234678899999999999999997532111100 0 0 001111122221111
Q ss_pred HhccCCCCCCcccHHHHH---HHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhc-c
Q 036079 229 NSVASDQCTDKDDLNLLQ---EKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVN-M 302 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~---~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~-~ 302 (1399)
... ....-.++++. +.+... ..+++-++|+|+++.........+...+.....++.+|++|.++ .+... .
T Consensus 80 ---~p~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPI-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccc-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000 00112233333 222211 23567788999998888777777777777666777777777654 33222 2
Q ss_pred CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 303 GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
+....+.+.+++.+++.+.+...... . ...+...++.++|.|...
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~------~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA------E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc------C---hHHHHHHHHHcCCCHHHH
Confidence 23356999999999999988875411 1 123556788899999643
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.36 E-value=0.0016 Score=75.39 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=95.9
Q ss_pred CCccccchhhHHHHHHHHhcc----C---cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELLLRD----D---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
-.++.|.+..++++.+.+... + .-+-..++-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 346889998888888766321 0 001234677899999999999999999973 22222 22211
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC-----------hh---hHhhhcccCCC--CC
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES-----------YN---YWSILSCPFEA--VA 284 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~-----------~~---~~~~l~~~~~~--~~ 284 (1399)
.++ .....+ .....+.+.+.......+.+|++|+++... .. .+..+...+.. ..
T Consensus 213 s~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SEF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 111111 111122233333334678999999985420 00 11112221211 12
Q ss_pred CCcEEEEecCChhhhhc--cC---CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 285 PGSKIVVTTRNLGVTVN--MG---ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 285 ~~s~iivTtr~~~~~~~--~~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
.+..||.||...+.... .. -...+.+...+.++..++|...... ......- ...++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dv----d~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEV----DLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCccc----CHHHHHHHcCCCC
Confidence 45678888876543222 11 1235788888888888888766532 1111111 2355667776653
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0019 Score=73.24 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=100.4
Q ss_pred cCCccccchhhHH-HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 147 NEAKVYGREKDKE-AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 147 ~~~~~vGr~~~~~-~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
-+..++|-..... .+...+... .+.....+.|||..|.|||-|++++.+ ...........+.++ .+....
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~ 156 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTN 156 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHH
Confidence 3455667654443 233333222 233567899999999999999999998 444444433233322 333444
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChh-h-HhhhcccCCC-CCCCcEEEEecCCh------
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYN-Y-WSILSCPFEA-VAPGSKIVVTTRNL------ 296 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~-~-~~~l~~~~~~-~~~~s~iivTtr~~------ 296 (1399)
.++..+... -.+.+++.. .-=++++||++-.... . .+++...|-. ...|..||+|++..
T Consensus 157 ~~v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 157 DFVKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 444443321 223445544 3348899999652211 1 2222222221 12344899999753
Q ss_pred ---hhhhccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC
Q 036079 297 ---GVTVNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG 351 (1399)
Q Consensus 297 ---~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (1399)
.+..++...-.+++++.+.+....++.+.+... ....+ ++++.-|+++...
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~-~~~i~---~ev~~~la~~~~~ 278 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR-GIEIP---DEVLEFLAKRLDR 278 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc-CCCCC---HHHHHHHHHHhhc
Confidence 334455556679999999999999999876332 22222 3444445544443
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.34 E-value=0.047 Score=70.91 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=77.9
Q ss_pred CccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..++|.+..++.+.+.+..... ++.....++.++|+.|+|||++|+.++... ...-...+.++++.-.....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccchH--
Confidence 4689999999999999975321 011234678899999999999999999631 111122334444432221111
Q ss_pred HHHHhccCCCC-CCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC-----------CCCcEEEEec
Q 036079 226 SILNSVASDQC-TDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV-----------APGSKIVVTT 293 (1399)
Q Consensus 226 ~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTt 293 (1399)
...++.+.. ........+...++. ....+|+||++...+...+..+...+..+ -..+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 111222111 011111222222222 23348999999988887787776655432 1334477777
Q ss_pred CC
Q 036079 294 RN 295 (1399)
Q Consensus 294 r~ 295 (1399)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 74
No 186
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=3.1e-05 Score=95.61 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=33.9
Q ss_pred cCCcceEEecCCCCccccCC---CCCCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccc
Q 036079 1031 YSSLQSLKIRYCKSLVSFPE---VSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTH 1096 (1399)
Q Consensus 1031 l~~L~~L~ls~~~~l~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 1096 (1399)
+++|+.|++++|..+++..- ...+++|++|.+.+|..+++.........+++|++|+|++|..+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 44555555555443322210 1124456666655555555555555555666666666666665533
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.00071 Score=67.39 Aligned_cols=88 Identities=17% Similarity=0.016 Sum_probs=46.9
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
+.+.|+|++|+||||+|+.++.... .....++++..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999997432 22223555554443322222111 11111111 1112222223333444333
Q ss_pred -eEEEEEcccCccC
Q 036079 257 -KFLLVLDDVWNES 269 (1399)
Q Consensus 257 -~~LiVlDdv~~~~ 269 (1399)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4999999997754
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.011 Score=76.10 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
...++|.+..++.+...+..... .++....++.++|+.|+|||++|+.+++.. -..-...+.++++.-.. ...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~~- 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KHS- 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hhh-
Confidence 34689999999999988864321 012223578899999999999999998632 11112234444432211 111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHhcC-CeEEEEEcccCccChhhHhhhcccCCCC-----------CCCcEEEEe
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNESYNYWSILSCPFEAV-----------APGSKIVVT 292 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivT 292 (1399)
..+-++.+......+.. ..+.+.++. ..-+|+||++...+...+..+...+..+ -..+.||+|
T Consensus 643 --~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 643 --VSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred --HHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 11112222110111111 112222322 2369999999887777777765554322 122347777
Q ss_pred cCC
Q 036079 293 TRN 295 (1399)
Q Consensus 293 tr~ 295 (1399)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 775
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=97.32 E-value=0.0021 Score=78.90 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHH---hccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELL---LRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.+++|.++..+++.+.+ ..... -+....+-+.++|++|+|||++|++++... . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 45888877666555543 22110 012235568999999999999999998732 1 122332211 1
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC----------hhh----HhhhcccCC--CCCCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES----------YNY----WSILSCPFE--AVAPG 286 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~----------~~~----~~~l~~~~~--~~~~~ 286 (1399)
+. ....+ .....+.+.+.+..+..+++|++||++... ... +..+...+. ....+
T Consensus 252 f~----~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 11100 111233344455556788999999995421 111 112222221 12345
Q ss_pred cEEEEecCChhhhhc-c---C-CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCC
Q 036079 287 SKIVVTTRNLGVTVN-M---G-ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKG 351 (1399)
Q Consensus 287 s~iivTtr~~~~~~~-~---~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (1399)
..||.||...+.... + + -...+.++..+.++-.++++.++.... . ........+++++.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-L----SPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-c----chhHHHHHHHhcCCC
Confidence 567777766443221 1 1 124578888899999999988764311 1 113345778888887
No 190
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00085 Score=78.54 Aligned_cols=190 Identities=18% Similarity=0.166 Sum_probs=115.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
+++||-+.....+...+... .-.......|+.|+||||+|+-++....... | ....+...-..-+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 35799999999999998643 2234567899999999999999885321111 1 1111111111112222
Q ss_pred Hh-------ccCCCCCCcccHHHHHHHHHHH-hcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhh
Q 036079 229 NS-------VASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVT 299 (1399)
Q Consensus 229 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~ 299 (1399)
.. +........++.+++.+.+.-. .++|-=+.|+|+|+-.+...|..+...+.....+.+.|+.|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0000011222333333332221 23566689999998888888888888777666677767766653 232
Q ss_pred -hccCCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH
Q 036079 300 -VNMGADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL 354 (1399)
Q Consensus 300 -~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 354 (1399)
.-.+..+.|.++.++.++....+...+....- ...++....|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCChh
Confidence 23344467999999999999999888743322 2235666778888888543
No 191
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.29 E-value=0.0019 Score=64.97 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=77.1
Q ss_pred cchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchh------------------ccCCceEEEEe
Q 036079 153 GREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ------------------RHFEIKAWTCV 214 (1399)
Q Consensus 153 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------~~f~~~~wv~~ 214 (1399)
|-++..+.+.+.+... .-...+.++|+.|+||+++|..++...--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4566677777777532 334578999999999999999987532111 11223334332
Q ss_pred CCC---CCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEE
Q 036079 215 SEE---FDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVV 291 (1399)
Q Consensus 215 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv 291 (1399)
... ....++. ++.+.+.... ..+++=++|+||++......+..+...+...+.++++|+
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 221 1222221 2222222211 124567899999999888888888888877778899988
Q ss_pred ecCChh-hhhc-cCCCCceecCCCC
Q 036079 292 TTRNLG-VTVN-MGADPAYQLKELS 314 (1399)
Q Consensus 292 Ttr~~~-~~~~-~~~~~~~~l~~l~ 314 (1399)
+|++.. +... .+....+.+.+++
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 888754 2221 2222346665553
No 192
>PRK08116 hypothetical protein; Validated
Probab=97.29 E-value=0.00098 Score=73.13 Aligned_cols=104 Identities=24% Similarity=0.233 Sum_probs=58.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
..+.|+|.+|+|||.||.++++.. ...-..+++++ ..+++..+...+.... .....+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 458999999999999999999843 22233455664 3445555554443221 112222 22333333
Q ss_pred eEEEEEcccCccChhhHhh--hcccCCC-CCCCcEEEEecCCh
Q 036079 257 KFLLVLDDVWNESYNYWSI--LSCPFEA-VAPGSKIVVTTRNL 296 (1399)
Q Consensus 257 ~~LiVlDdv~~~~~~~~~~--l~~~~~~-~~~~s~iivTtr~~ 296 (1399)
. ||||||+......+|.. +...+.. -..+..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999995443334432 2222211 12456799999753
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.24 E-value=0.0048 Score=78.68 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
...++|.+..++.+.+.+..... ..+....++.++|+.|+|||++|+.++... +...+.++.++-.....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc--
Confidence 34688999999999888874311 012234568899999999999999998732 23345555544222111
Q ss_pred HHHHHhccCCCCC-CcccHHHHHHHHHHHhcC-CeEEEEEcccCccChhhHhhhcccCC
Q 036079 225 KSILNSVASDQCT-DKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNESYNYWSILSCPFE 281 (1399)
Q Consensus 225 ~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~~~~~~~~~~l~~~~~ 281 (1399)
+...++..... ..+.... +.+.++. ..-+|+||+++..+.+.+..+...+.
T Consensus 526 --~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11122221110 1111122 2333333 34599999999888777777666554
No 194
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0002 Score=74.51 Aligned_cols=189 Identities=15% Similarity=0.081 Sum_probs=117.8
Q ss_pred cccccccccccccc---------cccCCcCcEEEeecCCCCC---CCccccccccEEEEeecCCC-CccchhhccCCCcc
Q 036079 920 VRELTYLWWSETRL---------LQDVRSLNRLQISRCPQLL---SLPELQCRLRFLELSYCEGL-TRLPQALLTLSSLT 986 (1399)
Q Consensus 920 ~~~L~~L~l~~n~l---------~~~l~~L~~L~l~~~~~~~---~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~ 986 (1399)
+..++.+++..|.+ +.++|.|+.|+++.|+... .+|.-..+|++|-|.+..+. +.....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45666777777765 7889999999999997643 34433468999988886643 33445567788888
Q ss_pred EEEEccCCCccc-cC---CccCCCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccC---CCCCCCCCcE
Q 036079 987 EMRIAHCTSLIS-FP---EAALPSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFP---EVSLPSRLRT 1059 (1399)
Q Consensus 987 ~L~l~~~~~l~~-~~---~~~~~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~---~~~~~~~L~~ 1059 (1399)
.|.++.|+.-.. +. .-..-+.+++|....|....-....-...-+|++..+-+..|+. +... ....++.+--
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc-cchhhcccCCCCCcchh
Confidence 898888632111 11 11223467777777775221111111112378888888888873 3222 1233456667
Q ss_pred EEecCCCCCcccchhhhhcCCCCccEEeecCCCCcccccc-------ccccCccceee
Q 036079 1060 IEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIAR-------IQLAPSLKRLI 1110 (1399)
Q Consensus 1060 L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~-------~~~~~~L~~L~ 1110 (1399)
|+++. +++.+....-....+++|..|.++++|....+.. ++.+++++.|+
T Consensus 229 LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 78887 6676664433336789999999999887766543 34556665554
No 195
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.011 Score=66.93 Aligned_cols=179 Identities=15% Similarity=0.063 Sum_probs=102.1
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhcc--------CCceEEEEeCCCCCHHHHHHHHH
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--------FEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~--------f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.-+++...+.. +.-...+.++|+.|+||+++|..++...--... .+..-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 45566666643 234568889999999999999988753211000 000011111222221111
Q ss_pred HhccCCCCCCcccHHHHHHHHHH----HhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhc-c
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKK----QLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVN-M 302 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~----~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~-~ 302 (1399)
..+.....-.++++.+.... -..+++-++|+|+++.........+...+...+.++.+|++|.+. .+... .
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000011223333332221 123677799999998887777777777776666677777666653 33322 2
Q ss_pred CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHH
Q 036079 303 GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAK 357 (1399)
Q Consensus 303 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 357 (1399)
+..+.+.+.+++.+++.+.+.+.. + .+ ++.+..+++.++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 333568999999999988886542 1 11 2346778999999996443
No 196
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.15 E-value=9.6e-05 Score=75.69 Aligned_cols=87 Identities=22% Similarity=0.201 Sum_probs=53.0
Q ss_pred hcCCCCcccEEEecCCcccc-----cCccccCccccceeeccCcccc----ccch-------hhhccccccEEEcCCccc
Q 036079 542 MLLNLPRLRVFSLHGYCVSK-----LPNEIGNLKHLRFLNLSGTEIQ----ILPE-------SINSLYNLHTILLENCHR 605 (1399)
Q Consensus 542 ~~~~l~~Lr~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~-------~i~~L~~L~~L~L~~~~~ 605 (1399)
.+..+..+..+|||||.|.. +...+.+-++|+.-+++.--.. ++|+ .+-++++|+..+||.|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457788889999998762 4455667778888887763211 3333 345566666777666544
Q ss_pred cccchh----hhcccCcccEEEcCCCc
Q 036079 606 LKKLCK----DMGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 606 l~~lp~----~i~~L~~L~~L~l~~n~ 628 (1399)
-...|. -|+.-+.|.||.+++|.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC
Confidence 333333 24555666666666665
No 197
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.0034 Score=70.36 Aligned_cols=105 Identities=21% Similarity=0.149 Sum_probs=65.5
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCc-eEEEEeCCCC-CHHHHHHHHHHhccCC
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEEF-DVFRISKSILNSVASD 234 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~~ 234 (1399)
...++++.+..- .+..-+.|+|.+|+|||||++.+++... .++-+. ++|+.+.+.. .+.++++.+...+...
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 445688888642 2334569999999999999999887321 122233 4677777654 6788888888877664
Q ss_pred CCCCcccH----HHHHHHHHHHh--cCCeEEEEEcccCc
Q 036079 235 QCTDKDDL----NLLQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 235 ~~~~~~~~----~~~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..+..... ......+.+++ ++++++||+|++..
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 43222111 11111222222 48999999999943
No 198
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.0077 Score=67.91 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=64.2
Q ss_pred CCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhc-cCCCCceecCCCChhhHHHHHHHhhcCCCCC
Q 036079 255 GKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVN-MGADPAYQLKELSNDDCLCVLTQISLGARDF 332 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 332 (1399)
+++-++|+|+++......+..+...+.....++.+|++|.++ .+... .+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 556689999999988888888877777666777666665553 33222 2233569999999999999987642 1
Q ss_pred CCChhhHHHHHHHHHHcCCChHHHHHHH
Q 036079 333 SMHQSLKEVGEKIAMKCKGLPLAAKTLG 360 (1399)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 360 (1399)
.+ ...++..++|.|.....+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997554443
No 199
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.06 E-value=0.029 Score=72.60 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=77.3
Q ss_pred CCccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
...++|-+..++.+.+.+..... +.+.....+.++|+.|+|||+||+.+++. .-..-...+-++.+.-.+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-
Confidence 35689999999999988864321 11223356778999999999999999862 1111122334444332221111
Q ss_pred HHHHHhccCCC-CCCcccHHHHHHHHHHHhcCCe-EEEEEcccCccChhhHhhhcccCCCC-----------CCCcEEEE
Q 036079 225 KSILNSVASDQ-CTDKDDLNLLQEKLKKQLSGKK-FLLVLDDVWNESYNYWSILSCPFEAV-----------APGSKIVV 291 (1399)
Q Consensus 225 ~~il~~l~~~~-~~~~~~~~~~~~~l~~~l~~k~-~LiVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iiv 291 (1399)
.+.++.+. ........ .+.+.++.++ .+|+||+++..+.+.+..+...+..+ ...+-+|+
T Consensus 585 ---~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11122211 00111112 2333444444 58999999888877777776655432 13455666
Q ss_pred ecCC
Q 036079 292 TTRN 295 (1399)
Q Consensus 292 Ttr~ 295 (1399)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7664
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.05 E-value=0.0061 Score=74.17 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=96.3
Q ss_pred CCccccchhhHHHHHHHHh---ccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 148 EAKVYGREKDKEAIVELLL---RDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
-.+++|-++.++++.+++. ..+. .+....+-+.++|++|+|||++|+.++... ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3468898877666655443 1100 012334568899999999999999998732 111 222221 1
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC----------hhhHhh----hcccCC--CCCC
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES----------YNYWSI----LSCPFE--AVAP 285 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~----------~~~~~~----l~~~~~--~~~~ 285 (1399)
++. ....+ .....+.+.+....+..+.+|++||++... ...+.. +...+. ....
T Consensus 123 ~~~----~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFV----EMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 11111 111223334444445678999999995421 011111 111111 1223
Q ss_pred CcEEEEecCChhhhhc-c----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHH
Q 036079 286 GSKIVVTTRNLGVTVN-M----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTL 359 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 359 (1399)
+..||.||..+..... + .-...+.+...+.++-.+++..+..... .. + ......+++.+.|. +-.|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~-~~--~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK-LA--P--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC-CC--c--chhHHHHHHhCCCCCHHHHHHH
Confidence 4456667765432111 1 1124588888888888888887753221 11 1 12245788888874 4444433
No 201
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.04 E-value=0.0029 Score=64.79 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=96.7
Q ss_pred CCccccchhhHH---HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 148 EAKVYGREKDKE---AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
-+++||.++... -|+++|...+.-++-.++-|..+|++|.|||.+|+++++...+ .| +.+. ..++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHHH-
Confidence 356899887664 3556665433334557889999999999999999999984332 22 1111 1111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-hhH-----------hhhcccCC--CCCCCcEEE
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-NYW-----------SILSCPFE--AVAPGSKIV 290 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-~~~-----------~~l~~~~~--~~~~~s~ii 290 (1399)
|-+.++ +...++.+...+.-+.-++++++|.++.... ..+ ..+...+. ..+.|...|
T Consensus 188 --iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 --IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred --HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 111111 1122222223333345789999998854210 001 11111111 234566666
Q ss_pred EecCChhhhhcc-CC--CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 291 VTTRNLGVTVNM-GA--DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 291 vTtr~~~~~~~~-~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
-.|..+...+.. .. ...++..--+++|-.+++..++-.- +-....-.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~-----Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF-----PLPVDADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC-----CCccccCHHHHHHHhCCC
Confidence 666655543321 11 1346777778888888888877321 111122246677777775
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.00067 Score=67.00 Aligned_cols=101 Identities=25% Similarity=0.266 Sum_probs=70.6
Q ss_pred cccEEEecCCcccccCccccCccccceeeccCccccccchhhhc-cccccEEEcCCccccccchh--hhcccCcccEEEc
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINS-LYNLHTILLENCHRLKKLCK--DMGNLIKLHHLRN 624 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l 624 (1399)
....+||++|.+..++ .|..++.|..|.|++|+|+.+-+.+.. +++|+.|.|.+| .+..+-+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 4567888888887764 377888888888888888888666654 567888888884 4555532 2567788888888
Q ss_pred CCCcccccCCc----ccccccccCccceEEe
Q 036079 625 SNVDSLEEMPK----GFGKLTCLLTLCTFVV 651 (1399)
Q Consensus 625 ~~n~~~~~lp~----~~~~L~~L~~L~l~~~ 651 (1399)
-+|. ....+. -+.++++|+.|++..+
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8876 333332 2566777777766444
No 203
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.013 Score=68.60 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=47.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..++++|+|++|+||||++..++.....+.....+..++... .....+.+....+.++.... ...+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh-
Confidence 347999999999999999998886322221123344555432 12223333333333333221 223333444444433
Q ss_pred cCCeEEEEEcccC
Q 036079 254 SGKKFLLVLDDVW 266 (1399)
Q Consensus 254 ~~k~~LiVlDdv~ 266 (1399)
. ..=+||+|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 34588889874
No 204
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.02 E-value=0.0066 Score=70.84 Aligned_cols=225 Identities=16% Similarity=0.066 Sum_probs=117.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCe
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKK 257 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 257 (1399)
++.|+|+.++||||+++.+.... .+. .+++...+......-+. +....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~------------------d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELL------------------DLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHH------------------HHHHHHHHhhccCC
Confidence 99999999999999997766532 111 44544332211111101 11111111112278
Q ss_pred EEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhhh-----cc-CCCCceecCCCChhhHHHHHHHhhcCCCC
Q 036079 258 FLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTV-----NM-GADPAYQLKELSNDDCLCVLTQISLGARD 331 (1399)
Q Consensus 258 ~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~-----~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 331 (1399)
..|+||.|+.. ..|+.....+...++. +|++|+-...... .. +....+++-||+-.|...+-...+
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999665 5688777777766666 8888888754322 22 223468999999999766543100
Q ss_pred CCCChhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhcccccccCCchhhhhccccCCchhhhhhhhh
Q 036079 332 FSMHQSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPRDWEFVLNTDIWDLQEHKCDIIPALGVSYHFLPPQLKQCFAY 411 (1399)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~ 411 (1399)
. ...... .-.=.-..||.|-++..-...-. .......++..+....... ... +.+++.+.+
T Consensus 168 -~-~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di~~~~~~------------~~~-~~~k~i~~~ 228 (398)
T COG1373 168 -E-PSKLEL-LFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDIIERGKI------------ENA-DLMKRILRF 228 (398)
T ss_pred -c-hhHHHH-HHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHHHHHcCc------------ccH-HHHHHHHHH
Confidence 0 001111 22223357999988755332211 0111222222211111100 011 335555555
Q ss_pred ccccCCCcccChHHHHHHHHHcCCccccCCcccHHHHHHHHHHHHHhcccccc
Q 036079 412 CSLFPKDYEFHEEEIILLWIAEGFLHQANSRRKLEDLGRDFVRELYSRSLFQQ 464 (1399)
Q Consensus 412 ~a~fp~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 464 (1399)
++... +..+....+.+.+- | ..++....|++-|.+.-++..
T Consensus 229 l~~~~-g~~~s~~~la~~l~--~---------is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 229 LASNI-GSPISYSSLARELK--G---------ISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HHhhc-CCccCHHHHHHHHh--c---------cchHHHHHHHHHHHHhhheEE
Confidence 55443 33455556655442 0 114567788888877777753
No 205
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0054 Score=66.47 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=103.1
Q ss_pred ccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
++=|-++.+++|.+.+.-.-. -+-+.++-|.+||++|.|||-||++|++ +....| +.+...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence 455778888888887632100 0234677899999999999999999998 444444 332222
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhc-CCeEEEEEcccCccC--------------hhhHhhhcccCCCC--CC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLS-GKKFLLVLDDVWNES--------------YNYWSILSCPFEAV--AP 285 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LiVlDdv~~~~--------------~~~~~~l~~~~~~~--~~ 285 (1399)
++.+..-++.. .+...+++..+ ..+..|++|.++.-. +...-++...+..+ ..
T Consensus 220 ---ElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ---ELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 23333322211 34455555554 578999999885410 11112222222211 34
Q ss_pred CcEEEEecCChhhhhcc----C-CCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh----HHH
Q 036079 286 GSKIVVTTRNLGVTVNM----G-ADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP----LAA 356 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~~----~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lal 356 (1399)
..|||..|-..++.+.. + -...+++..-+.+.-.++|+-++.. -.....-. .+.+++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd----~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVD----LELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcC----HHHHHHhcCCCchHHHHHH
Confidence 56899888765543321 1 1235777744444555666655421 11111122 255666677654 455
Q ss_pred HHHHhhhc
Q 036079 357 KTLGSLLR 364 (1399)
Q Consensus 357 ~~~~~~l~ 364 (1399)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55566653
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.0015 Score=68.85 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=28.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV 214 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 214 (1399)
.++|+|..|.||||++..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 578899999999999999987 46678877776643
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.96 E-value=0.013 Score=64.42 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=34.6
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
-++++..++... +.|.|.|++|+|||++|+.+++ .... ..+++++....+..+++
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 345555555421 3567999999999999999986 2221 23455555555544443
No 208
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.91 E-value=0.0029 Score=65.17 Aligned_cols=131 Identities=20% Similarity=0.284 Sum_probs=66.5
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEe----CCCC-----CH--
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV----SEEF-----DV-- 220 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~-----~~-- 220 (1399)
..+..+....++.|.. ..++.+.|++|.|||.||.+.+.+.-..+.|+.++++.- .+.. +.
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3455667777777763 248999999999999999888865544578887777532 1111 11
Q ss_pred -----HHHHHHHHHhccCCCCCCcccHHHHHHHH------HHHhcCC---eEEEEEcccCccChhhHhhhcccCCCCCCC
Q 036079 221 -----FRISKSILNSVASDQCTDKDDLNLLQEKL------KKQLSGK---KFLLVLDDVWNESYNYWSILSCPFEAVAPG 286 (1399)
Q Consensus 221 -----~~~~~~il~~l~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~ 286 (1399)
..-+.+.+..+.. ....+.+.+.= ..+++|+ ...||+|++.+....++..+... .+.+
T Consensus 75 K~~p~~~p~~d~l~~~~~-----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~ 146 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFG-----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEG 146 (205)
T ss_dssp ---TTTHHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT
T ss_pred HHHHHHHHHHHHHHHHhC-----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCC
Confidence 1111222222211 11122221100 1234553 46999999999888777777554 4689
Q ss_pred cEEEEecCChhh
Q 036079 287 SKIVVTTRNLGV 298 (1399)
Q Consensus 287 s~iivTtr~~~~ 298 (1399)
||||++--..+.
T Consensus 147 skii~~GD~~Q~ 158 (205)
T PF02562_consen 147 SKIIITGDPSQI 158 (205)
T ss_dssp -EEEEEE-----
T ss_pred cEEEEecCceee
Confidence 999999875444
No 209
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.86 E-value=0.0045 Score=66.83 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=51.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh--------ccCCCCCCcccHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS--------VASDQCTDKDDLNLL 245 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~--------l~~~~~~~~~~~~~~ 245 (1399)
....++.|+|.+|+|||++|.+++... ...-..++|++.. .++...+ .+++.. +.........+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 456799999999999999999998732 2334568899887 5554433 233322 111111011122223
Q ss_pred HHHHHHHhcCCeEEEEEccc
Q 036079 246 QEKLKKQLSGKKFLLVLDDV 265 (1399)
Q Consensus 246 ~~~l~~~l~~k~~LiVlDdv 265 (1399)
.+.+.+.++.+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 33333344456668888887
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.025 Score=64.16 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=87.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
.+...+.+.|++|+|||+||..++. ...|+.+=-++...- ++.. +......+...+.+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc---HHHHHHHHHHHHHHhh
Confidence 3556778999999999999999986 456765544332111 1111 1222233444555566
Q ss_pred cCCeEEEEEcccCccChhhHhhh------------cccC---CCCCCCcEEEEecCChhhhhccCCC----CceecCCCC
Q 036079 254 SGKKFLLVLDDVWNESYNYWSIL------------SCPF---EAVAPGSKIVVTTRNLGVTVNMGAD----PAYQLKELS 314 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~~~~~~l------------~~~~---~~~~~~s~iivTtr~~~~~~~~~~~----~~~~l~~l~ 314 (1399)
+..--.||+||+... .+|-.+ ...+ |+.++.--|+-||....+...++-. ..+.++.++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 677789999999542 333332 2222 2222233355577777777766533 358899888
Q ss_pred h-hhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHc
Q 036079 315 N-DDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKC 349 (1399)
Q Consensus 315 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (1399)
. ++..+.+...- ...+.+.+..+++.+.+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77777776643 112334455666666666
No 211
>PRK08118 topology modulation protein; Reviewed
Probab=96.84 E-value=0.00057 Score=69.17 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=27.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchh-ccCCceEE
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQ-RHFEIKAW 211 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~w 211 (1399)
.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854333 45676776
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0056 Score=70.79 Aligned_cols=143 Identities=12% Similarity=0.087 Sum_probs=84.7
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc-------------------cCCceE
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFEIKA 210 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~f~~~~ 210 (1399)
.++|-+....++..+.... +.....+.++|++|+||||+|.++++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhc----CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 3677778888888888643 12334699999999999999999986421111 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCc
Q 036079 211 WTCVSEEFD---VFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGS 287 (1399)
Q Consensus 211 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s 287 (1399)
.++.+.... ..+..+++.+...... ..++.-+||+|+++....+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 444433333 2233333333222111 03567899999998877666667766666666778
Q ss_pred EEEEecCCh-hhhhcc-CCCCceecCCC
Q 036079 288 KIVVTTRNL-GVTVNM-GADPAYQLKEL 313 (1399)
Q Consensus 288 ~iivTtr~~-~~~~~~-~~~~~~~l~~l 313 (1399)
++|++|... .+...+ +....+++.+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCc
Confidence 888888743 222212 11234666663
No 213
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00097 Score=82.60 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=38.3
Q ss_pred cccceeeccCcccc-c-cchhhh-ccccccEEEcCCcccc-ccchhhhcccCcccEEEcCCCcccccCCcccccccccCc
Q 036079 570 KHLRFLNLSGTEIQ-I-LPESIN-SLYNLHTILLENCHRL-KKLCKDMGNLIKLHHLRNSNVDSLEEMPKGFGKLTCLLT 645 (1399)
Q Consensus 570 ~~L~~L~Ls~n~i~-~-lp~~i~-~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~ 645 (1399)
.+|++||++|...- . =|..++ .||.|+.|.+++-... .+.-.-..++++|..||+|+++ +..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 34555555553322 1 122232 3566666666551111 1111223455666666666665 4444 45666666666
Q ss_pred cceEEec
Q 036079 646 LCTFVVG 652 (1399)
Q Consensus 646 L~l~~~~ 652 (1399)
|.+.+-.
T Consensus 200 L~mrnLe 206 (699)
T KOG3665|consen 200 LSMRNLE 206 (699)
T ss_pred HhccCCC
Confidence 6554333
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.072 Score=60.72 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=51.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
+.++++++|+.|+||||++.+++.....+.....+..+.... .....+-++...+.++.+.. ...+..++...+.+ +
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~~-l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALAE-L 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHHH-h
Confidence 346999999999999999999987422221123455555433 23455566666666665432 22222223333332 3
Q ss_pred cCCeEEEEEcccCc
Q 036079 254 SGKKFLLVLDDVWN 267 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~ 267 (1399)
.++ =+|++|..-.
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 444 4566998743
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.0012 Score=73.44 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=42.7
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD 200 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 200 (1399)
+++|.++.++++++++.......+.+.++++++|++|+||||||+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976543224456899999999999999999998743
No 216
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.79 E-value=0.003 Score=80.88 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=76.9
Q ss_pred CCccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
...++|.+..++.+.+.+..... .+.....++.++|+.|+|||.+|++++.. .-+.....+-++++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 35689999999999999864311 12234457899999999999999988762 2111122222222211111
Q ss_pred HHHHHhccCCCCC-CcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCC-----------CCcEEEEe
Q 036079 225 KSILNSVASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVA-----------PGSKIVVT 292 (1399)
Q Consensus 225 ~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivT 292 (1399)
..+.+-++....- ....-..+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111112221110 11111123333332 455699999998877777777665554332 44566777
Q ss_pred cCC
Q 036079 293 TRN 295 (1399)
Q Consensus 293 tr~ 295 (1399)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 663
No 217
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.77 E-value=0.03 Score=63.41 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=119.8
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHH-HHHhcCcchhccCCceEEEEeCCC---CCHHHHHHHHHH
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFEIKAWTCVSEE---FDVFRISKSILN 229 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~ 229 (1399)
|.+..+++..||.+. .-.+|.|.||-|.||+.|+ .++..+.+ .+..+++.+- .+-...+..++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 667889999999754 3369999999999999999 77765422 2555554432 233345555555
Q ss_pred hccCCC-----------------------CCCcccHH-HHHHH-------HHH-------------------Hhc---CC
Q 036079 230 SVASDQ-----------------------CTDKDDLN-LLQEK-------LKK-------------------QLS---GK 256 (1399)
Q Consensus 230 ~l~~~~-----------------------~~~~~~~~-~~~~~-------l~~-------------------~l~---~k 256 (1399)
++|--+ ..-....+ ++.+. +++ +++ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 554211 00011111 11111 111 111 13
Q ss_pred eEEEEEcccCccC---------hhhHhhhcccCCCCCCCcEEEEecCChhhhh----ccCC--CCceecCCCChhhHHHH
Q 036079 257 KFLLVLDDVWNES---------YNYWSILSCPFEAVAPGSKIVVTTRNLGVTV----NMGA--DPAYQLKELSNDDCLCV 321 (1399)
Q Consensus 257 ~~LiVlDdv~~~~---------~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~----~~~~--~~~~~l~~l~~~~~~~l 321 (1399)
|=+||+|++-... ..+|..... ..+-.+||++|-+..... .+.. ...+.+.-.+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999985422 223433221 235568999998755433 2322 24578899999999999
Q ss_pred HHHhhcCCCCC------------CCC----hhhHHHHHHHHHHcCCChHHHHHHHhhhcCCCChh
Q 036079 322 LTQISLGARDF------------SMH----QSLKEVGEKIAMKCKGLPLAAKTLGSLLRGKDDPR 370 (1399)
Q Consensus 322 ~~~~~~~~~~~------------~~~----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 370 (1399)
...+....... ... ....+-....++..||==.-+..+++.++...+++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 98876432110 000 12344456778899999999999999998765543
No 218
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.76 E-value=0.0053 Score=71.14 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=36.7
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 4999999999999988654 35889999999999999999973
No 219
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.76 E-value=0.023 Score=58.13 Aligned_cols=124 Identities=24% Similarity=0.259 Sum_probs=70.9
Q ss_pred ccccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHH
Q 036079 144 SLVNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 144 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (1399)
.+++-..++|.|...+.+++--..-- .+....-|.+||..|+|||+|++++.+ ++....-..+= +.+.
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVE--V~k~------ 122 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVE--VDKE------ 122 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEE--EcHH------
Confidence 33445678999988888876554322 233445688999999999999999998 34433322221 1111
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc-cChhhHhhhcccCCCC---CCCcEEEEecCC
Q 036079 224 SKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN-ESYNYWSILSCPFEAV---APGSKIVVTTRN 295 (1399)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~---~~~s~iivTtr~ 295 (1399)
+..++..+.+.++. ..+||+|+.||+.= ...+....+...+..+ .+...++..|.+
T Consensus 123 --------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 --------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred --------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11222222333322 36899999999833 2234455665555422 233344444543
No 220
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.74 E-value=0.0015 Score=81.00 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=72.7
Q ss_pred CccceeEEecccccCCCCcchhhHHhhhcCCCCcccEEEecCCcccccCccccCccccceeeccCccccccc--hhhhcc
Q 036079 515 DVKHLRTFLPMKLSNYEGNYLAWSVLQMLLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILP--ESINSL 592 (1399)
Q Consensus 515 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~i~~L 592 (1399)
.+|.||+|...+..- ....+..-+.+|++|+.||+|+.+++.+ ..+++|++|+.|.+.+-.+..-+ ..+.+|
T Consensus 146 ~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCcee-----cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 467777775433211 1223444578888999999999888887 77888999999988887777432 467788
Q ss_pred ccccEEEcCCccccccchhh-------hcccCcccEEEcCCCc
Q 036079 593 YNLHTILLENCHRLKKLCKD-------MGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~n~ 628 (1399)
++|++||+|... ....+.. -..|++|+.||.|++.
T Consensus 220 ~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCcc
Confidence 899999998732 2222211 1347888888888775
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.73 E-value=0.02 Score=71.91 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=97.5
Q ss_pred EC--CCCChHHHHHHHHhcCcchhccC-CceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeE
Q 036079 182 NG--MGGVGKTTLAQLVYNDDRVQRHF-EIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKF 258 (1399)
Q Consensus 182 ~G--~gGiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 258 (1399)
.| |.|+||||+|..++++. ....+ ..++-++++.......+ +++++.+....+ . -..+.-
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~-~--------------~~~~~K 632 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVI-REKVKEFARTKP-I--------------GGASFK 632 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC-c--------------CCCCCE
Confidence 36 67899999999999842 11222 23556677665444433 333333221111 0 012457
Q ss_pred EEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhcc-CCCCceecCCCChhhHHHHHHHhhcCCCCCCCCh
Q 036079 259 LLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVNM-GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQ 336 (1399)
Q Consensus 259 LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 336 (1399)
++|+|+++.........+...+......+++|+++.+. .+...+ +....+++.+++.++....+...+.... ...
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i-- 709 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LEL-- 709 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCC--
Confidence 99999999988777888877776555666777666653 332222 2235699999999999988887663221 111
Q ss_pred hhHHHHHHHHHHcCCChHHHHHH
Q 036079 337 SLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 337 ~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
.++....|++.++|.+-.+..+
T Consensus 710 -~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHH
Confidence 2567789999999988544333
No 222
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.72 E-value=0.0064 Score=73.96 Aligned_cols=43 Identities=33% Similarity=0.420 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+++|.+..++.+...+.. ....-+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~------~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG------PNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 589999999999887642 2334678999999999999999975
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.70 E-value=0.005 Score=68.79 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=69.8
Q ss_pred cchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhcc
Q 036079 153 GREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVA 232 (1399)
Q Consensus 153 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 232 (1399)
+|....+...+++.... .+...+-+.|+|..|+|||.||.++++... +..+ .+.++++ .+++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHHHh
Confidence 45555555666665322 122346789999999999999999998543 2233 3445543 345555544442
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhh--hcccC-CCC-CCCcEEEEecCC
Q 036079 233 SDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSI--LSCPF-EAV-APGSKIVVTTRN 295 (1399)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~--l~~~~-~~~-~~~s~iivTtr~ 295 (1399)
.. ...+ .+.. + .+-=||||||+-.+....|.. +...+ ... ..+-.+|+||-.
T Consensus 205 ~~------~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1222 2222 2 245589999997665566753 33333 222 245568888874
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.70 E-value=0.0052 Score=65.55 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=36.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
+..+++.|+|++|+|||++|.+++.. ....-..++|++... ++...+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 45689999999999999999998863 223346788999876 5554443
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.0056 Score=65.58 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=56.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
...+.++|.+|+|||+||.++++... ..-..+++++ ..+++..+-..... .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 35789999999999999999998432 2223455553 34454444433321 1112222 222333
Q ss_pred CeEEEEEcccCccChhhHhh--hcccCCCC-CCCcEEEEecCC
Q 036079 256 KKFLLVLDDVWNESYNYWSI--LSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~~--l~~~~~~~-~~~s~iivTtr~ 295 (1399)
+.=+||+||+......+|+. +...+... ...-.+||||-.
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34488889997655555553 22222111 123457777774
No 226
>PRK12377 putative replication protein; Provisional
Probab=96.69 E-value=0.0047 Score=66.33 Aligned_cols=102 Identities=20% Similarity=0.111 Sum_probs=55.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
...+.|+|.+|+|||.||.++++.. ......++++++ .+++..+-..... ....... +.. + .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~------~~l~~~l~~~~~~-----~~~~~~~---l~~-l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTV------PDVMSRLHESYDN-----GQSGEKF---LQE-L-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEH------HHHHHHHHHHHhc-----cchHHHH---HHH-h-c
Confidence 3578999999999999999999843 333334566654 2444444333221 1111112 222 2 3
Q ss_pred CeEEEEEcccCccChhhHh--hhcccCCCC-CCCcEEEEecCC
Q 036079 256 KKFLLVLDDVWNESYNYWS--ILSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~--~l~~~~~~~-~~~s~iivTtr~ 295 (1399)
+-=||||||+.......|. .+...+... ...--+||||-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5569999999544333343 222222211 122347788774
No 227
>PRK08181 transposase; Validated
Probab=96.68 E-value=0.0027 Score=69.17 Aligned_cols=101 Identities=20% Similarity=0.082 Sum_probs=54.0
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
.-+.|+|++|+|||.||.++.+.. ......+.|+. ..+++..+..... ....+...+.+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~------~~~~~~~l~~l-----~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARR------ELQLESAIAKL-----DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHh------CCcHHHHHHHH-----hc
Confidence 458999999999999999998732 22223345554 3444444433211 11222222222 23
Q ss_pred eEEEEEcccCccChhhHh--hhcccCCCCCCCcEEEEecCCh
Q 036079 257 KFLLVLDDVWNESYNYWS--ILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 257 ~~LiVlDdv~~~~~~~~~--~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
.=|||+||+.......|. .+...+...-.+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 449999999554332222 2322222111123588888853
No 228
>PRK06526 transposase; Provisional
Probab=96.67 E-value=0.0025 Score=69.12 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=52.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
.+-+.|+|++|+|||+||.++..... +..+. +.|+ +..++..++..... . .. ....+.+. .
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~-----~-~~---~~~~l~~l--~ 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH-----A-GR---LQAELVKL--G 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh-----c-Cc---HHHHHHHh--c
Confidence 34689999999999999999986432 22222 3332 23344444432211 1 11 12223332 2
Q ss_pred CeEEEEEcccCccChhhHh--hhcccCCC-CCCCcEEEEecCCh
Q 036079 256 KKFLLVLDDVWNESYNYWS--ILSCPFEA-VAPGSKIVVTTRNL 296 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~--~l~~~~~~-~~~~s~iivTtr~~ 296 (1399)
+.-+||+||+.......+. .+...+.. ...+ .+||||..+
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 3458999999654322221 22222211 1223 488888853
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.011 Score=66.59 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh-hhhcc-CCCCceecCCCChhhHHHHHHHh
Q 036079 255 GKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG-VTVNM-GADPAYQLKELSNDDCLCVLTQI 325 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~-~~~~~-~~~~~~~l~~l~~~~~~~l~~~~ 325 (1399)
+++-++|+|+++..+......+...+.....++.+|++|.+.. +...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4455566799887766555555555543344566777777643 32221 22246899999999998888654
No 230
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.62 E-value=0.0041 Score=62.72 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=66.5
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
+||....+.++++.+.... ....-|.|+|..|+||+.+|+.+++.-. + .-..-+-|+++ ..+...+-.++...
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~s~-r-~~~pfi~vnc~-~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNNSP-R-KNGPFISVNCA-ALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHCST-T-TTS-EEEEETT-TS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHhhh-c-ccCCeEEEehh-hhhcchhhhhhhcc
Confidence 4788888888888886542 1224567999999999999999997321 1 11122333443 22333344444433
Q ss_pred ccCCCCC-CcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCC------C-----CCCcEEEEecCC
Q 036079 231 VASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEA------V-----APGSKIVVTTRN 295 (1399)
Q Consensus 231 l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~------~-----~~~s~iivTtr~ 295 (1399)
-...... ..... ..+... ..=-++||++++........+...+.. + ....|||.||..
T Consensus 74 ~~~~~~~~~~~~~----G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDKK----GLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEBE----HHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccC----Cceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 2221110 01111 122222 333688999987665444444333221 1 125688888885
No 231
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.60 E-value=0.0067 Score=66.14 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=55.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhcc----CCceEEEEeCCCCCHHHHHHHHHHhccCCCC-----------CC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEEFDVFRISKSILNSVASDQC-----------TD 238 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----------~~ 238 (1399)
....++.|+|.+|+|||++|.+++........ -..++|++....++..++ .++++..+.... ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 45679999999999999999999753222221 357889998877665433 334444332211 01
Q ss_pred cccHHHHHHHHHHHhc-C-CeEEEEEcccC
Q 036079 239 KDDLNLLQEKLKKQLS-G-KKFLLVLDDVW 266 (1399)
Q Consensus 239 ~~~~~~~~~~l~~~l~-~-k~~LiVlDdv~ 266 (1399)
..+..+....+.+.+. . +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1222233344444443 3 66788888883
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=96.58 E-value=0.0039 Score=68.15 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+.|+|++|+|||+||..++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999999763
No 233
>PRK04296 thymidine kinase; Provisional
Probab=96.58 E-value=0.0037 Score=64.98 Aligned_cols=115 Identities=10% Similarity=-0.070 Sum_probs=63.9
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC-CcccHHHHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT-DKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 255 (1399)
.++.|+|+.|.||||+|..++.. ...+-..++.+. ..++.+.....++++++..... .....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999999873 323333333331 1112222233455555532221 11233444445544 334
Q ss_pred CeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh
Q 036079 256 KKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV 298 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~ 298 (1399)
+.-+||+|.+.-.+.++..++...+ ...|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 5568999999554333233333222 3467889999997544
No 234
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.56 E-value=0.049 Score=64.01 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=48.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
.++++++|++|+||||++..++........-..++.++..... ...+.+....+.++.+.. ...+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 3589999999999999998887632211222345666654321 122333333444443322 223334455555443 2
Q ss_pred CCeEEEEEccc
Q 036079 255 GKKFLLVLDDV 265 (1399)
Q Consensus 255 ~k~~LiVlDdv 265 (1399)
..=+||+|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3568889966
No 235
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.54 E-value=0.055 Score=62.47 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc
Q 036079 154 REKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD 200 (1399)
Q Consensus 154 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 200 (1399)
|+...+.+.+.+... ......+|+|.|.=|+|||++.+.+.+..
T Consensus 1 ~~~~a~~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345567777777653 22577899999999999999999998743
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.53 E-value=0.0032 Score=58.37 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 036079 179 ISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~ 199 (1399)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998873
No 237
>PTZ00494 tuzin-like protein; Provisional
Probab=96.51 E-value=0.16 Score=56.97 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=103.1
Q ss_pred ccccCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHH
Q 036079 144 SLVNEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 144 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (1399)
.......+|.|+++-..+.+.|.+-+ ...++++++.|.-|-||++|.+.....+. -..++|++... ++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cch
Confidence 34456779999999888888887643 35789999999999999999998876332 24677888766 445
Q ss_pred HHHHHHhccCCCCC-CcccHHHHHHHHHH---HhcCCeEEEEEc--ccCccChhhHhhhcccCCCCCCCcEEEEecCChh
Q 036079 224 SKSILNSVASDQCT-DKDDLNLLQEKLKK---QLSGKKFLLVLD--DVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG 297 (1399)
Q Consensus 224 ~~~il~~l~~~~~~-~~~~~~~~~~~l~~---~l~~k~~LiVlD--dv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~ 297 (1399)
++.+.+.++.+.-+ -.+-++-+.+.... ...++.=++|+- +-.+.. .-+.+. ..+.....-++|++----+.
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~-RVYnE~-vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLG-RVYGEV-VSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHH-HHHHHH-HHHHccchhheeeeechHhh
Confidence 77888888876432 23333433333332 234555555553 221111 111111 12233345567776544433
Q ss_pred hhhcc---CCCCceecCCCChhhHHHHHHHhh
Q 036079 298 VTVNM---GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 298 ~~~~~---~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
+.... ..-+.|-+.+++.++|.++-.+..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 32111 111358899999999988876653
No 238
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.50 E-value=0.0084 Score=62.31 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=117.2
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc----chhccCCceEEEEeCCC---------
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD----RVQRHFEIKAWTCVSEE--------- 217 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~----~~~~~f~~~~wv~~~~~--------- 217 (1399)
+.++++....+..... .++.+-+.++|++|.||-|.+..+.+.. -.+-+-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 6666666666666553 3456788999999999999887665421 11223344555544333
Q ss_pred -C-----------CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeE-EEEEcccCccChhhHhhhcccCCCCC
Q 036079 218 -F-----------DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKF-LLVLDDVWNESYNYWSILSCPFEAVA 284 (1399)
Q Consensus 218 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LiVlDdv~~~~~~~~~~l~~~~~~~~ 284 (1399)
. .-+.+.+++++++..... ++ ....+.| ++|+-.+++...+....+.+....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 112233334443332211 00 0012333 66777776655566666666666556
Q ss_pred CCcEEEEecCCh-hhhhccCCC-CceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC-hHHHHHHHh
Q 036079 285 PGSKIVVTTRNL-GVTVNMGAD-PAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL-PLAAKTLGS 361 (1399)
Q Consensus 285 ~~s~iivTtr~~-~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 361 (1399)
..+|+|+..-.. .+...+... -.+++...+++|....+.+.+-.+. ...+ .+++.+|+++++|. --|+-++-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-LQLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-ccCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 777877643321 111111111 2488999999999999988774433 2222 68899999999996 445544432
Q ss_pred hh-cCCC--------ChhHHHHHHhhhhc
Q 036079 362 LL-RGKD--------DPRDWEFVLNTDIW 381 (1399)
Q Consensus 362 ~l-~~~~--------~~~~w~~~l~~~~~ 381 (1399)
.- .+.+ ...+|+-.......
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHH
Confidence 22 2211 23578877665433
No 239
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.47 E-value=0.0077 Score=62.55 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=51.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCC--CCcccH-HHHHHHHHH
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQC--TDKDDL-NLLQEKLKK 251 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~--~~~~~~-~~~~~~l~~ 251 (1399)
+++++++|+.|+||||.+.+++.... ..-..+..++... +....+-++..++.++.+.. ....+. +...+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 47999999999999999988887433 2333466676653 33566777777888775421 112222 323334443
Q ss_pred HhcCCeEEEEEccc
Q 036079 252 QLSGKKFLLVLDDV 265 (1399)
Q Consensus 252 ~l~~k~~LiVlDdv 265 (1399)
.-..+.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32233347777865
No 240
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.47 E-value=0.014 Score=69.43 Aligned_cols=180 Identities=13% Similarity=0.075 Sum_probs=89.0
Q ss_pred CccccchhhHHHHHHHHhc---c-CcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLR---D-DLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1399)
.++.|.+..++.+.+.... . ...+-..++-|.++|++|+|||.+|+++++. ....| +-++.+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~--------- 293 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG--------- 293 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH---------
Confidence 3577777666555442211 0 0001234577899999999999999999973 22222 111111
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh--h------h----HhhhcccCCCCCCCcEEEEe
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY--N------Y----WSILSCPFEAVAPGSKIVVT 292 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~--~------~----~~~l~~~~~~~~~~s~iivT 292 (1399)
.+..... ......+.+.+...-...+++|++|+++..-. . . ...+...+.....+--||.|
T Consensus 294 -~l~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 294 -KLFGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred -Hhccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1111111 11122233333333345889999999964210 0 0 01111112222233445667
Q ss_pred cCChhh-hhcc----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCC
Q 036079 293 TRNLGV-TVNM----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGL 352 (1399)
Q Consensus 293 tr~~~~-~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 352 (1399)
|.+... ...+ .-...+.++.-+.++-.++|+.+......... .......+++.+.|.
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~---~~~dl~~La~~T~Gf 428 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW---KKYDIKKLSKLSNKF 428 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc---cccCHHHHHhhcCCC
Confidence 765432 1111 11235778888888888888877643211000 012235667777665
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.43 E-value=0.0021 Score=65.74 Aligned_cols=100 Identities=21% Similarity=0.283 Sum_probs=50.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
..-+.|+|..|+|||.||.++.+... ...+ .+.|+. ..+++..+- ... .....++. +.+ +.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~------~~~L~~~l~----~~~--~~~~~~~~---~~~-l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFIT------ASDLLDELK----QSR--SDGSYEEL---LKR-LK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE------HHHHHHHHH----CCH--CCTTHCHH---HHH-HH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEee------cCceecccc----ccc--cccchhhh---cCc-cc-
Confidence 45699999999999999999987432 2233 355554 344444432 221 11112222 222 22
Q ss_pred CeEEEEEcccCccChhhHhh--hcccCCCC-CCCcEEEEecCC
Q 036079 256 KKFLLVLDDVWNESYNYWSI--LSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~~--l~~~~~~~-~~~s~iivTtr~ 295 (1399)
+-=|+||||+-......|.. +...+... .++ .+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 23478899996654444432 11111111 123 58888885
No 242
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.0083 Score=65.74 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=27.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhcc-CCceEEEEe
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRH-FEIKAWTCV 214 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~wv~~ 214 (1399)
...+.++|..|+|||.||.++++.. ... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 4678999999999999999999843 222 234566653
No 243
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.075 Score=54.23 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=82.5
Q ss_pred cccc-hhhHHHHHHHHhccC-------cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 151 VYGR-EKDKEAIVELLLRDD-------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 151 ~vGr-~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
+||+ +..+.+|.+.+.-.. .-+-.+++-+.++|++|.|||-||++|+++ ....|+.++.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 5654 556666665542110 002346678899999999999999999973 33455666654 2
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccC--------------hhhHhhhcccCC--CCCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNES--------------YNYWSILSCPFE--AVAP 285 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~--------------~~~~~~l~~~~~--~~~~ 285 (1399)
+ .+..-++. . .+...+.-.. ..-+.+|+.|.++... +...-++...+. ...+
T Consensus 217 l----vqk~igeg---s----rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 217 L----VQKYIGEG---S----RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred H----HHHHhhhh---H----HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 2 22221111 0 1222222222 2467888888875410 111112222222 1245
Q ss_pred CcEEEEecCChhhhhc-----cCCCCceecCCCChhhHHHHHHHhh
Q 036079 286 GSKIVVTTRNLGVTVN-----MGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 286 ~s~iivTtr~~~~~~~-----~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
.-+||.+|..-++.+. ......++..+-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 6788887765444322 1122457787877777777776554
No 244
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.36 E-value=0.012 Score=57.91 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=61.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC---CCHHHHHHHHHHhc-----cCCC----CCCcccH--
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE---FDVFRISKSILNSV-----ASDQ----CTDKDDL-- 242 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l-----~~~~----~~~~~~~-- 242 (1399)
..|-|++..|.||||.|...+-. ..++=..+.++..-.. ......+..+ ..+ +... .+...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47888899999999999887752 2222223444443332 2333333332 100 0000 0011111
Q ss_pred -HHHHHHHHHHhcC-CeEEEEEcccCcc---ChhhHhhhcccCCCCCCCcEEEEecCChh
Q 036079 243 -NLLQEKLKKQLSG-KKFLLVLDDVWNE---SYNYWSILSCPFEAVAPGSKIVVTTRNLG 297 (1399)
Q Consensus 243 -~~~~~~l~~~l~~-k~~LiVlDdv~~~---~~~~~~~l~~~~~~~~~~s~iivTtr~~~ 297 (1399)
.+..+..++.+.. +-=|+|||++-.. .....+++...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233344444 4459999998332 12234455555555667789999999853
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.35 E-value=0.0065 Score=71.76 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=72.0
Q ss_pred ccccchhhHHHHHHHHhccCc----------------------------CCCCCcEEEEEECCCCChHHHHHHHHhcCcc
Q 036079 150 KVYGREKDKEAIVELLLRDDL----------------------------RADDGFSVISINGMGGVGKTTLAQLVYNDDR 201 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~----------------------------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 201 (1399)
+++|-+..-+.++.||..++. -..+..+++.++|++|+||||||.-+++..
T Consensus 272 dLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqa- 350 (877)
T KOG1969|consen 272 DLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQA- 350 (877)
T ss_pred HHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhc-
Confidence 467777777777777765431 012456899999999999999999999732
Q ss_pred hhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhh
Q 036079 202 VQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSI 275 (1399)
Q Consensus 202 ~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~ 275 (1399)
.| .++=+++|...+...+-..|...+......+ ..+++.-+|+|.++.......+.
T Consensus 351 ---GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------adsrP~CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 351 ---GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------ADSRPVCLVIDEIDGAPRAAVDV 406 (877)
T ss_pred ---Cc-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cCCCcceEEEecccCCcHHHHHH
Confidence 23 3677888888777776666665554332100 12688999999998765333333
No 246
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.34 E-value=0.003 Score=61.90 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=62.0
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcch-hccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
||+...++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 577777777777776532 23346789999999999999988864221 1122110 0000
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC-CCCcEEEEecCC
Q 036079 231 VASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 231 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-~~~s~iivTtr~ 295 (1399)
.. .+.+.+ .+.--++++|++..+......+...+... ....|+|.||+.
T Consensus 60 ---------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 60 ---------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 111111 14446789999887766666666555432 567799999985
No 247
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.01 Score=72.64 Aligned_cols=153 Identities=17% Similarity=0.243 Sum_probs=83.0
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC-----CceEEEEeCCCCCHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-----EIKAWTCVSEEFDVFRIS 224 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~ 224 (1399)
.++||++|++++++.|.+..- .. -.++|.+|||||++|.-++... +.+.- +..++.-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K---NN---PvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~sL----------- 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK---NN---PVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYSL----------- 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC---CC---CeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEEe-----------
Confidence 489999999999999987531 11 2467999999999988777521 11111 1111110
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccC---------hhhHhhhcccCCCCCCC-cEEEEec
Q 036079 225 KSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNES---------YNYWSILSCPFEAVAPG-SKIVVTT 293 (1399)
Q Consensus 225 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~---------~~~~~~l~~~~~~~~~~-s~iivTt 293 (1399)
++. .+..... -..+.++..+.+.+.+ +.++..+++|.++..- .+.-..+. |....| -++|-.|
T Consensus 233 -D~g-~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLK---PaLARGeL~~IGAT 306 (786)
T COG0542 233 -DLG-SLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLK---PALARGELRCIGAT 306 (786)
T ss_pred -cHH-HHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhH---HHHhcCCeEEEEec
Confidence 111 1111111 2233444444444444 3458999999986521 11111122 222233 2444444
Q ss_pred CChhhhhcc-------CCCCceecCCCChhhHHHHHHHhh
Q 036079 294 RNLGVTVNM-------GADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 294 r~~~~~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
...+.-..+ ...+.+.+..-+.+++..+++...
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 332221111 123568899999999999988654
No 248
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.012 Score=63.14 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
....++.|+|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 456899999999999999999998632 22234577887655543
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.30 E-value=0.046 Score=70.13 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=93.6
Q ss_pred CccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.++.|.+..++.+.+.+.-.-. -+-...+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4577888888777776542100 01123456889999999999999999983 22222 222211
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC--------h----hhHhhhcccCCC--CCCCc
Q 036079 222 RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES--------Y----NYWSILSCPFEA--VAPGS 287 (1399)
Q Consensus 222 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~--------~----~~~~~l~~~~~~--~~~~s 287 (1399)
+++....+ .....+.+.+...-+..+.+|++|+++... . .....+...+.. ...+.
T Consensus 522 ----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 12222111 111223333333334678999999985421 0 011112222221 12344
Q ss_pred EEEEecCChhhhhcc-----CCCCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCCh
Q 036079 288 KIVVTTRNLGVTVNM-----GADPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLP 353 (1399)
Q Consensus 288 ~iivTtr~~~~~~~~-----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 353 (1399)
.||.||..++..... .-...+.+...+.++-.++|+.+..+ ...... .....+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAED----VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCcc----CCHHHHHHHcCCCC
Confidence 566677655432221 11245788888888888888765422 111111 12356777787753
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.0035 Score=70.54 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=53.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
..+.++|..|+|||.||.++++... ..-..++|+++ .+++..+... ... ...+.... + +.+. +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~------~~l~~~l~~~-~~~---~~~~~~~~---~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA------DELIEILREI-RFN---NDKELEEV---Y-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH------HHHHHHHHHH-Hhc---cchhHHHH---H-HHhc-c
Confidence 5699999999999999999998432 22234566653 2333333221 111 11111111 2 2222 2
Q ss_pred eEEEEEcccCccChhhHh--hhcccCCCC-CCCcEEEEecCC
Q 036079 257 KFLLVLDDVWNESYNYWS--ILSCPFEAV-APGSKIVVTTRN 295 (1399)
Q Consensus 257 ~~LiVlDdv~~~~~~~~~--~l~~~~~~~-~~~s~iivTtr~ 295 (1399)
-=||||||+.......|. .+...+... ..+..+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 238999999654333332 232222211 234568888874
No 251
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.29 E-value=0.009 Score=61.58 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=29.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEE
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 213 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1399)
....+|.|.|++|+||||+|+.++. +....+..++++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 3556999999999999999999997 4444555555553
No 252
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.26 E-value=0.025 Score=61.19 Aligned_cols=90 Identities=19% Similarity=0.082 Sum_probs=53.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccC------CceEEEEeCCCCCHHHHHHHHHHhccCCCC--------CCc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF------EIKAWTCVSEEFDVFRISKSILNSVASDQC--------TDK 239 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~ 239 (1399)
....++.|+|.+|+|||++|.+++... ...- ..++|++....++...+ .++.+....... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeC
Confidence 456799999999999999999997532 1222 45789988777665444 333333222110 012
Q ss_pred ccHHHHHHHHHHHhc----CCeEEEEEcccC
Q 036079 240 DDLNLLQEKLKKQLS----GKKFLLVLDDVW 266 (1399)
Q Consensus 240 ~~~~~~~~~l~~~l~----~k~~LiVlDdv~ 266 (1399)
.+.+++...+.+..+ .+.-+||+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 334444444444332 355588999873
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.21 E-value=0.01 Score=65.96 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC----CCcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC----TDKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 249 (1399)
+..+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++.... ..+...++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 466899999999999999999987632 2333457788877666553 2444443211 0233445555555
Q ss_pred HHHhc-CCeEEEEEcccC
Q 036079 250 KKQLS-GKKFLLVLDDVW 266 (1399)
Q Consensus 250 ~~~l~-~k~~LiVlDdv~ 266 (1399)
....+ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 466799999984
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.20 E-value=0.02 Score=73.30 Aligned_cols=181 Identities=17% Similarity=0.136 Sum_probs=93.5
Q ss_pred CCccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
-.++.|.+..++++.+++...-. -+-...+.+.++|++|+|||++|+.+++. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH-----
Confidence 34588999999998887742100 01133467889999999999999999873 22222 222211
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccCh-----------hhHhhhcccCCCC-CCCcE
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESY-----------NYWSILSCPFEAV-APGSK 288 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~-----------~~~~~l~~~~~~~-~~~s~ 288 (1399)
+ +.... .......+...+.......+.+|++|+++.... .....+...+... ..+..
T Consensus 247 -~----i~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 -E----IMSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred -H----Hhccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1 11111 111122233334444456778999999854210 0111222222211 22334
Q ss_pred EEE-ecCChh-hhhcc---CC-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChH
Q 036079 289 IVV-TTRNLG-VTVNM---GA-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPL 354 (1399)
Q Consensus 289 iiv-Ttr~~~-~~~~~---~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 354 (1399)
++| ||.... +...+ +. ...+.+...+.++-.+++....-. ..... ......+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCcc----ccCHHHHHHhCCCCCH
Confidence 444 554432 21111 11 234777777888888888755421 11111 1234668888888643
No 255
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.19 E-value=0.014 Score=64.77 Aligned_cols=87 Identities=20% Similarity=0.113 Sum_probs=48.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchh-ccCCceEEEEeCCCC-CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEEF-DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 252 (1399)
..++++|+|++|+||||++..++.....+ +.+ .+..++..... ...+.+....+.++.+.. ...+..++.+.+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 45799999999999999999998643322 222 35556554321 233344444444443322 223344454444443
Q ss_pred hcCCeEEEEEccc
Q 036079 253 LSGKKFLLVLDDV 265 (1399)
Q Consensus 253 l~~k~~LiVlDdv 265 (1399)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777754
No 256
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.19 E-value=0.012 Score=63.39 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=54.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCC-ceEEEEeCCCCC-HHHHHHHHHHhccCC-------CCCCcccHH--
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEEFD-VFRISKSILNSVASD-------QCTDKDDLN-- 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~~-- 243 (1399)
+.+-++|+|.+|+||||||+++++ ..+.+|+ .++++.+++... +.++..++.+.=... ..+++....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 445789999999999999999998 4444454 455666766653 455666555421110 011111111
Q ss_pred --HHHHHHHHHh---cCCeEEEEEcccC
Q 036079 244 --LLQEKLKKQL---SGKKFLLVLDDVW 266 (1399)
Q Consensus 244 --~~~~~l~~~l---~~k~~LiVlDdv~ 266 (1399)
...-.+.+++ +++.+|+|+||+-
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122234444 3899999999983
No 257
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0071 Score=75.86 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=68.4
Q ss_pred CccccchhhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
..++|-++.++.+.+.+..... ........+.++|++|+|||++|+.++... . ...+.++++.-.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhccccc---
Confidence 4589999999999998874211 012234578999999999999999998732 2 2233444443222111
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHhcC-CeEEEEEcccCccChhhHhhhcccCC
Q 036079 226 SILNSVASDQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNESYNYWSILSCPFE 281 (1399)
Q Consensus 226 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~~~~~~~~~~l~~~~~ 281 (1399)
+.+-++.+......+. ...+.+.++. ...+|+||+++....+.+..+...+.
T Consensus 530 -~~~LiG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 -VSRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -HHHHcCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1112222211011110 1122233333 34699999998887777776655443
No 258
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.013 Score=62.21 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=50.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCc--chhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDD--RVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
-|+|.++|++|.|||+|.+++++.. |..+.|.....+.+... .+......+ .+.-...+.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE---SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE---SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh---hhhHHHHHHHHHHHHH
Confidence 4789999999999999999999865 33445544444444322 222222222 2344455666677777
Q ss_pred cCCeE--EEEEcccCc
Q 036079 254 SGKKF--LLVLDDVWN 267 (1399)
Q Consensus 254 ~~k~~--LiVlDdv~~ 267 (1399)
.++.. .+.+|.|..
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 66553 455788843
No 259
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.15 E-value=0.002 Score=63.51 Aligned_cols=87 Identities=20% Similarity=0.076 Sum_probs=47.5
Q ss_pred EEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeE
Q 036079 179 ISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKF 258 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 258 (1399)
|.|+|++|+|||+||+.+++. .. ....-+.++...+..++... ..............+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~----~~~~~~~~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGS----YDPSNGQFEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCE----EET-TTTTCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceee----eeecccccccccccccccc-----ccee
Confidence 679999999999999999972 21 12334667777777765432 2211110000000011111 1789
Q ss_pred EEEEcccCccChhhHhhhccc
Q 036079 259 LLVLDDVWNESYNYWSILSCP 279 (1399)
Q Consensus 259 LiVlDdv~~~~~~~~~~l~~~ 279 (1399)
++|||++.......+..+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999986655555554333
No 260
>PRK07261 topology modulation protein; Provisional
Probab=96.14 E-value=0.0084 Score=61.11 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=39.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcch-hccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCC
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRV-QRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 256 (1399)
.|+|+|++|+||||||+++...... .-+.|...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 4789999999999999999863221 1133444442111 1122344555566666666
Q ss_pred eEEEEEcccCc
Q 036079 257 KFLLVLDDVWN 267 (1399)
Q Consensus 257 ~~LiVlDdv~~ 267 (1399)
+ .|+|+...
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 6 67788743
No 261
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.14 E-value=0.011 Score=65.65 Aligned_cols=86 Identities=23% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC----CCcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC----TDKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 249 (1399)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.+++. .+++++.... ..+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46689999999999999999998863 23333567899887766653 2334433211 0233445555555
Q ss_pred HHHhc-CCeEEEEEcccC
Q 036079 250 KKQLS-GKKFLLVLDDVW 266 (1399)
Q Consensus 250 ~~~l~-~k~~LiVlDdv~ 266 (1399)
....+ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55544 456799999973
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.12 E-value=0.0042 Score=72.71 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=41.0
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+++|.++.++++++.|.......+.+.+++.++|++|+||||||+.++.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999543222344668999999999999999999997
No 263
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.09 E-value=0.014 Score=63.67 Aligned_cols=90 Identities=26% Similarity=0.255 Sum_probs=53.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhcc----CCceEEEEeCCCCCHHHHHHHHHHhccCCCC-----------CCc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEEFDVFRISKSILNSVASDQC-----------TDK 239 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----------~~~ 239 (1399)
...+.=|+|.+|+|||+||.+++-....... =..++|++....++...+. +|++....... ...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4468999999999999999888743222221 2358899998888877664 56665433210 011
Q ss_pred ccHHHHHHHHHHHh-cCCeEEEEEccc
Q 036079 240 DDLNLLQEKLKKQL-SGKKFLLVLDDV 265 (1399)
Q Consensus 240 ~~~~~~~~~l~~~l-~~k~~LiVlDdv 265 (1399)
.+..++...+...+ +++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 22222333333333 345568888887
No 264
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.065 Score=65.35 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=99.1
Q ss_pred CccccchhhH---HHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDK---EAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.++.|-++.. ++++++|...+. -+..-++-+.++|++|+|||-||++++-... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 4688887654 555555543221 1233467789999999999999999997432 334555543
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHh-cCCeEEEEEcccCccC---------------hhhHhhhcccCCCCCCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNES---------------YNYWSILSCPFEAVAPG 286 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LiVlDdv~~~~---------------~~~~~~l~~~~~~~~~~ 286 (1399)
++++.+.+... ...+.+.... ...++.|.+|+++... ...+.++...+.....+
T Consensus 379 ---EFvE~~~g~~a-------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ---EFVEMFVGVGA-------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---HHHHHhcccch-------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 33443333211 1222222222 3478899999874421 11122222222222222
Q ss_pred c-E-EEEecCChhhhhc--c--CC-CCceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHH
Q 036079 287 S-K-IVVTTRNLGVTVN--M--GA-DPAYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLA 355 (1399)
Q Consensus 287 s-~-iivTtr~~~~~~~--~--~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 355 (1399)
. . ++-+|...++.+. + +. +..+.++.-+.....++|.-++.... ...+..++.+ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHH
Confidence 2 2 3335554444322 1 11 24577888888888899988874322 2234455656 88888888744
No 265
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.08 E-value=0.0025 Score=66.26 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=53.7
Q ss_pred CCCCcccEEEecCCcccccCccccCccccceeeccCc--ccc-ccchhhhccccccEEEcCCccccccch--hhhcccCc
Q 036079 544 LNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGT--EIQ-ILPESINSLYNLHTILLENCHRLKKLC--KDMGNLIK 618 (1399)
Q Consensus 544 ~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~ 618 (1399)
..+..|..|++.+..++.+ ..|..|++|++|.++.| ++. .++--..++++|++|++++| .+..+- .....+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 3444455555555555444 23446667777777777 444 44444455577777777764 333211 12455566
Q ss_pred ccEEEcCCCcccccCCc----ccccccccCccceEE
Q 036079 619 LHHLRNSNVDSLEEMPK----GFGKLTCLLTLCTFV 650 (1399)
Q Consensus 619 L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~l~~ 650 (1399)
|..|++.+|. ...+-. .|.-+++|..|+...
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 6666666665 222221 144555555555443
No 266
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.05 E-value=0.004 Score=59.62 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|+|++|+||||+|+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 267
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.084 Score=61.39 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=63.8
Q ss_pred CccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.++=|.+..+.++.+++..-.. -+-..++-|.++|++|.|||.||++++.... +-++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch-----
Confidence 4567888888888777754211 0223567789999999999999999998432 223344333
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
+|+..+.++ ..+.+.+.+.+.-+.-++++++|+++-
T Consensus 258 ---eivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCcc------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 344444332 334444555555667899999999854
No 268
>PRK09354 recA recombinase A; Provisional
Probab=96.02 E-value=0.015 Score=65.27 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC----CCcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC----TDKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 249 (1399)
+..+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++.... ..+...++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 466899999999999999999988633 3333567899888777753 3444443211 0233455555555
Q ss_pred HHHhc-CCeEEEEEcccC
Q 036079 250 KKQLS-GKKFLLVLDDVW 266 (1399)
Q Consensus 250 ~~~l~-~k~~LiVlDdv~ 266 (1399)
....+ ++.-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 466799999984
No 269
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.01 E-value=0.01 Score=65.58 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
-..++.++|||++|.|||.+|+++++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999984
No 270
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.99 E-value=0.062 Score=57.96 Aligned_cols=172 Identities=24% Similarity=0.206 Sum_probs=93.6
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC-CceEEEEeCCCCCHH-HHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-EIKAWTCVSEEFDVF-RISKSI 227 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~-~~~~~i 227 (1399)
.++|-.++..++..++...-. .+...-|.|+|+.|.|||+|......+ .+.| +...-|...+..... -.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 489999998888888865321 123346789999999999998777765 2223 223344444443332 234445
Q ss_pred HHhccCC----CC---CCcccHHHHHHHHHHHh--cCCeEEEEEcccCccChhhHhhh-cccC----CCCCCCcEEEEec
Q 036079 228 LNSVASD----QC---TDKDDLNLLQEKLKKQL--SGKKFLLVLDDVWNESYNYWSIL-SCPF----EAVAPGSKIVVTT 293 (1399)
Q Consensus 228 l~~l~~~----~~---~~~~~~~~~~~~l~~~l--~~k~~LiVlDdv~~~~~~~~~~l-~~~~----~~~~~~s~iivTt 293 (1399)
.+|+..+ .. .-.+.+..+...++..- .+-++.+|+|.++-.....-+.+ -..| ....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4444322 11 12233344444444322 13468888888754321111111 1111 1234566778899
Q ss_pred CChh-------hhhccCCCCceecCCCChhhHHHHHHHhh
Q 036079 294 RNLG-------VTVNMGADPAYQLKELSNDDCLCVLTQIS 326 (1399)
Q Consensus 294 r~~~-------~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 326 (1399)
|-.. |-.++....++-++.++-++.+.+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9632 32333333345567777788877777654
No 271
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.038 Score=62.20 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 252 (1399)
.++++|+|+|++|+||||++..++... ...=..+..++++... ...+-++...+.++.+.. ...+...+.+.+...
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 345899999999999999999998632 2221234555554322 233333444444443321 123445555555443
Q ss_pred hcC-CeEEEEEcccCc
Q 036079 253 LSG-KKFLLVLDDVWN 267 (1399)
Q Consensus 253 l~~-k~~LiVlDdv~~ 267 (1399)
-.. +.=+|++|-.-.
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 221 234778887643
No 272
>PRK06696 uridine kinase; Validated
Probab=95.98 E-value=0.0084 Score=64.39 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.2
Q ss_pred cchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 153 GREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 153 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|++.+++|.+.+... ..+++.+|+|.|.+|+||||+|+.++.
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3667778888888653 345678999999999999999999997
No 273
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.92 E-value=0.024 Score=61.74 Aligned_cols=138 Identities=19% Similarity=0.298 Sum_probs=75.9
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc-chhccCCceEE----EEeCCCC-------
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD-RVQRHFEIKAW----TCVSEEF------- 218 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~~~f~~~~w----v~~~~~~------- 218 (1399)
+-+|..+..--.++|.. +....|.+.|.+|.|||.||.+..-.. ..++.|.-++- +.+++..
T Consensus 226 i~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 44577777777888854 467899999999999999997665321 23444543321 2333321
Q ss_pred --CHHHHHHHHHHhccCCCCCCcccHHHHHHHH----------HHHhcCC---eEEEEEcccCccChhhHhhhcccCCCC
Q 036079 219 --DVFRISKSILNSVASDQCTDKDDLNLLQEKL----------KKQLSGK---KFLLVLDDVWNESYNYWSILSCPFEAV 283 (1399)
Q Consensus 219 --~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l----------~~~l~~k---~~LiVlDdv~~~~~~~~~~l~~~~~~~ 283 (1399)
.+.-.++.|..-+..-....... +...+.+ -.+.+++ +-+||+|.+.+....+...+ +...
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~ 375 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRA 375 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhc
Confidence 11112222222221111001111 1111211 1223443 46899999988766555544 3446
Q ss_pred CCCcEEEEecCChhh
Q 036079 284 APGSKIVVTTRNLGV 298 (1399)
Q Consensus 284 ~~~s~iivTtr~~~~ 298 (1399)
+.||||+.|--..++
T Consensus 376 G~GsKIVl~gd~aQi 390 (436)
T COG1875 376 GEGSKIVLTGDPAQI 390 (436)
T ss_pred cCCCEEEEcCCHHHc
Confidence 899999998875444
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.91 E-value=0.035 Score=54.77 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=70.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeC---------------------CC----------------
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS---------------------EE---------------- 217 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~---------------------~~---------------- 217 (1399)
...++.|+|++|.||||+.+.+|...+. =.+.+|+.-- ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4468999999999999999999974332 1223332210 00
Q ss_pred -----C---CHHHHHHHHHHhccCCCC-----CCcccHHHHHHHHHHHhcCCeEEEEEcccCc--cChhhHhhhcccCCC
Q 036079 218 -----F---DVFRISKSILNSVASDQC-----TDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN--ESYNYWSILSCPFEA 282 (1399)
Q Consensus 218 -----~---~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~--~~~~~~~~l~~~~~~ 282 (1399)
. .+.+-..+.++..+.... .+-..-++..-.+.+.+-+++-+++-|.--. +....|+.+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 0 122222333333333211 1122223444456666778899999995322 112345544322223
Q ss_pred CCCCcEEEEecCChhhhhccC
Q 036079 283 VAPGSKIVVTTRNLGVTVNMG 303 (1399)
Q Consensus 283 ~~~~s~iivTtr~~~~~~~~~ 303 (1399)
+..|+.|+++|.+..+...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 457999999999998877664
No 275
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.086 Score=61.31 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=76.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
.+.-|.++|++|.|||-||++|++. ....| +++.++ +++....++ ....+...+++.=.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVGE------SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVGE------SERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhhh------HHHHHHHHHHHhhc
Confidence 4567889999999999999999993 33344 555444 333333222 22233333333334
Q ss_pred CCeEEEEEcccCccC-----------hhhHhhhcccCCC--CCCCcEEEEecCChhhhhcc--CC---CCceecCCCChh
Q 036079 255 GKKFLLVLDDVWNES-----------YNYWSILSCPFEA--VAPGSKIVVTTRNLGVTVNM--GA---DPAYQLKELSND 316 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~-----------~~~~~~l~~~~~~--~~~~s~iivTtr~~~~~~~~--~~---~~~~~l~~l~~~ 316 (1399)
.-+++|+||.++..- ..-...+...+.. ...|--||-.|..+++.+.. .. ...+-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 689999999985421 0111222222221 23566677667666553321 11 134667777788
Q ss_pred hHHHHHHHhhc
Q 036079 317 DCLCVLTQISL 327 (1399)
Q Consensus 317 ~~~~l~~~~~~ 327 (1399)
|-.++++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 88889988764
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.018 Score=65.43 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=38.0
Q ss_pred ccccch---hhHHHHHHHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcc
Q 036079 150 KVYGRE---KDKEAIVELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDR 201 (1399)
Q Consensus 150 ~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 201 (1399)
++-|-| .|+++|+++|..... -++.-++-|.++|++|.|||-||++++-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 455665 477888888864321 1234467889999999999999999997543
No 277
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.035 Score=60.22 Aligned_cols=92 Identities=24% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH---HhccCCCCCCcccHHHHHHH
Q 036079 172 ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL---NSVASDQCTDKDDLNLLQEK 248 (1399)
Q Consensus 172 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il---~~l~~~~~~~~~~~~~~~~~ 248 (1399)
+-++.+++=|+|+.|.||||+|.+++-. .+..-..++|++.-+.+++..+..-.. ..+....+.......++.+.
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 3457789999999999999999998863 333334789999999998776543222 22222222233333344444
Q ss_pred HHHHhcCCeEEEEEccc
Q 036079 249 LKKQLSGKKFLLVLDDV 265 (1399)
Q Consensus 249 l~~~l~~k~~LiVlDdv 265 (1399)
+......+--|||+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444445679999998
No 278
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.26 Score=54.75 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=89.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcch------h--ccCCceEEEEe-CCCCCHHHHHHHHHHhccCCCCCCcccHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRV------Q--RHFEIKAWTCV-SEEFDVFRISKSILNSVASDQCTDKDDLNLL 245 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~------~--~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 245 (1399)
-.++..++|..|.||+++|..+.+..-. . .+=+...++.. +......++. ++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 4567789999999999999998763200 1 11112222211 1111111111 2222221110
Q ss_pred HHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhhhc-cCCCCceecCCCChhhHHHHHH
Q 036079 246 QEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVTVN-MGADPAYQLKELSNDDCLCVLT 323 (1399)
Q Consensus 246 ~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~ 323 (1399)
+-++++-++|+|+++.........+...+...+.++.+|++|.. ..+... ......+++.++++++..+.+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 01257778999999777766677777777766677777765544 333322 2334579999999999988776
Q ss_pred HhhcCCCCCCCChhhHHHHHHHHHHcCCChHHHHHH
Q 036079 324 QISLGARDFSMHQSLKEVGEKIAMKCKGLPLAAKTL 359 (1399)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 359 (1399)
... . + ++.+..++...+|.=-|+..+
T Consensus 160 ~~~---~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 160 SKN---K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HcC---C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 541 1 1 244566666677633455553
No 279
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0041 Score=38.19 Aligned_cols=18 Identities=39% Similarity=0.827 Sum_probs=8.2
Q ss_pred cceeeccCccccccchhh
Q 036079 572 LRFLNLSGTEIQILPESI 589 (1399)
Q Consensus 572 L~~L~Ls~n~i~~lp~~i 589 (1399)
|++|||++|+|+.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.82 E-value=0.045 Score=64.04 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=49.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHHHHHhccCCCCC--CcccHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKSILNSVASDQCT--DKDDLNLLQEKLK 250 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~ 250 (1399)
..+.+|.++|.+|+||||.|..++..... ..+ .++.+++... ....+.++.+.++++.+... ...+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999874322 222 3444444322 23345566666666543221 1122223222222
Q ss_pred HHhcCCeEEEEEccc
Q 036079 251 KQLSGKKFLLVLDDV 265 (1399)
Q Consensus 251 ~~l~~k~~LiVlDdv 265 (1399)
+..++. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 56888877
No 281
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.78 E-value=0.0085 Score=61.94 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=41.4
Q ss_pred CCCcchhhHHhh----hcCCCCcccEEEecCCccc----ccC-------ccccCccccceeeccCcccc-ccch----hh
Q 036079 530 YEGNYLAWSVLQ----MLLNLPRLRVFSLHGYCVS----KLP-------NEIGNLKHLRFLNLSGTEIQ-ILPE----SI 589 (1399)
Q Consensus 530 ~~~~~~~~~~~~----~~~~l~~Lr~L~L~~n~i~----~lp-------~~~~~l~~L~~L~Ls~n~i~-~lp~----~i 589 (1399)
+++|++...-.. .+.+-++|++.+++.-... .+| ..+-++++|+..+||.|.+. ..|+ -|
T Consensus 37 LSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~i 116 (388)
T COG5238 37 LSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLI 116 (388)
T ss_pred ccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHH
Confidence 456665443322 2555666777766653221 222 23456677777777777666 3333 34
Q ss_pred hccccccEEEcCCc
Q 036079 590 NSLYNLHTILLENC 603 (1399)
Q Consensus 590 ~~L~~L~~L~L~~~ 603 (1399)
++-+.|.+|.+++|
T Consensus 117 s~~t~l~HL~l~Nn 130 (388)
T COG5238 117 SSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCCceeEEeecC
Confidence 56667777777764
No 282
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.73 E-value=0.034 Score=63.23 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=34.2
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++|+...+.++.+.+.... ....-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHH
Confidence 4788777888877776532 2334579999999999999999986
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.71 E-value=0.013 Score=61.15 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh---
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL--- 253 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--- 253 (1399)
++..|.|++|+||||+++.+.......+ ..+.+.........+ +.+..+. ....+..........-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~----L~~~~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKE----LREKTGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHH----HHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHH----HHHhhCc----chhhHHHHHhcCCcccccc
Confidence 5888999999999999999876322221 233333332222222 2222221 1122211111000000
Q ss_pred ---cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChh
Q 036079 254 ---SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLG 297 (1399)
Q Consensus 254 ---~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~ 297 (1399)
..++-+||+|++.-.+...+..+...... .|+++|+.--..+
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 13345999999988777777777665543 4778887665443
No 284
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.71 E-value=0.03 Score=62.76 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=42.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchh----ccCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
+..+++-|+|++|+|||+++.+++-..... ..=..++|++..+.++++++. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 456799999999999999999877422221 111368899998888887765 45666654
No 285
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.70 E-value=0.15 Score=56.57 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=40.2
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (1399)
+.++=+.+....+..++... +.|.|.|++|+||||+|++++. +.... .+.|.+....+..++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 34555555566677777432 4589999999999999999997 23222 235555555544433
No 286
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.70 E-value=0.049 Score=65.28 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=43.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEE
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 213 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1399)
.+++--.+-++++..||...-. .....+++.++|++|.||||.++.+++.. .|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 3455556678899999975432 23345799999999999999999999732 355566754
No 287
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.66 E-value=0.026 Score=63.72 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchh----ccCCceEEEEeCCCCCHHHHHHHHHHhccCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEEFDVFRISKSILNSVASD 234 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 234 (1399)
....+.-|+|.+|+|||+|+.+++-..... +.-..++|++..+.+++.++.+ +++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 456788999999999999999987432221 1124678999999888877654 56666543
No 288
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.65 E-value=0.011 Score=58.60 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=68.7
Q ss_pred hhhcCCCCcccEEEecCCcccccCcccc-CccccceeeccCccccccc--hhhhccccccEEEcCCccccccchh----h
Q 036079 540 LQMLLNLPRLRVFSLHGYCVSKLPNEIG-NLKHLRFLNLSGTEIQILP--ESINSLYNLHTILLENCHRLKKLCK----D 612 (1399)
Q Consensus 540 ~~~~~~l~~Lr~L~L~~n~i~~lp~~~~-~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~ 612 (1399)
.+.|..++.|.+|.|.+|+|+.+-..+. -+++|..|.|.+|+|..+- ..+..++.|++|-+-+|. +..-+. .
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEE
Confidence 3458999999999999999999954444 4567999999999998663 346788999999998853 443332 3
Q ss_pred hcccCcccEEEcCCCc
Q 036079 613 MGNLIKLHHLRNSNVD 628 (1399)
Q Consensus 613 i~~L~~L~~L~l~~n~ 628 (1399)
+..+++|++||...-.
T Consensus 136 l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcceEeehhhhh
Confidence 6889999999987654
No 289
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.64 E-value=0.068 Score=65.98 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred cCCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 147 NEAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 147 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
....++|....+.++.+.+.... .....|.|+|..|+|||++|+.+++... + .-...+.+++..-.. +.+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~-r-~~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP-R-AKRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeecCCCCH--HHHHH
Confidence 34579999999999998886532 2334578999999999999999997321 1 111234445443321 22222
Q ss_pred -HHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCC-----------CCcEEEEecC
Q 036079 227 -ILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVA-----------PGSKIVVTTR 294 (1399)
Q Consensus 227 -il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtr 294 (1399)
+...-.+... .... . ..........-.++||++.......+..+...+.... ...|||.||.
T Consensus 266 ~lfg~~~~~~~-~~~~--~---~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ELFGHEKGAFT-GAIA--Q---RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred HHcCCCCCccC-CCCc--C---CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 2111110000 0000 0 0000011234468899998877666666655443221 1358888775
Q ss_pred C
Q 036079 295 N 295 (1399)
Q Consensus 295 ~ 295 (1399)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 290
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.63 E-value=0.043 Score=55.87 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=29.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
++.|+|.+|+||||+|..++... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998732 22334577877765543
No 291
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.00083 Score=69.37 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCcccEEEccCCCccccCccccccCccCCcceEEecCCCCccccCCCCCCCCCcEEEecCCCCCcccchhhhhcCCCCcc
Q 036079 1005 PSRLRTIDIEGCNALKSLPEAWMHNSYSSLQSLKIRYCKSLVSFPEVSLPSRLRTIEIEGCYALKCLPEAWMENSSTSLE 1084 (1399)
Q Consensus 1005 ~~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ls~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 1084 (1399)
+.+.++|+..||. +.+|... ..++.|++|.||-|. ++.+..+.-+++|++|.|.. |.|.++....+..++|+|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic---~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISIC---EKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHH---HhcccceeEEeeccc-cccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhh
Confidence 4456777777776 5555433 237889999998754 66666667778899999998 7888888888888999999
Q ss_pred EEeecCCCCcccccc------ccccCccceeee
Q 036079 1085 SLNIYNCNSLTHIAR------IQLAPSLKRLII 1111 (1399)
Q Consensus 1085 ~L~L~~c~~l~~~~~------~~~~~~L~~L~l 1111 (1399)
.|.|..|+-...-+. +..+|+|++|+=
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 999999987776654 567889988873
No 292
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.59 E-value=0.023 Score=64.80 Aligned_cols=133 Identities=13% Similarity=0.015 Sum_probs=71.7
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILN 229 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 229 (1399)
.++|+...+.++.+.+.... ....-|.|+|..|+||+++|+.++.... + .-...+.+++..-. ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~-r-~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSS-R-WQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCC-c-cCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 58999999999988886542 2334688999999999999999985211 0 11123345554432 2222222221
Q ss_pred hccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCC-----------CCcEEEEecCC
Q 036079 230 SVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVA-----------PGSKIVVTTRN 295 (1399)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtr~ 295 (1399)
.-..... ... ......+. ....=.++||||.......+..+...+.... ...|||.||..
T Consensus 80 ~~~~~~~-g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFT-GAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccC-Ccc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1111000 000 00011111 1223358899998877666666554443211 13588888764
No 293
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.027 Score=58.02 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=44.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCC-CCCCcccHHHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASD-QCTDKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~ 252 (1399)
.++.+|+|.|.+|.||||+|+.++. ...... ++-++-..-+. ..-.....+..... ....+.+.+-+.+.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4668999999999999999999997 333221 11122111111 00001111111111 122556677788888888
Q ss_pred hcCCe
Q 036079 253 LSGKK 257 (1399)
Q Consensus 253 l~~k~ 257 (1399)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 294
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.0095 Score=56.91 Aligned_cols=25 Identities=44% Similarity=0.456 Sum_probs=21.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcc
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDR 201 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~ 201 (1399)
--|+|+|++|+||||+++.+++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999997443
No 295
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.23 Score=58.90 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=54.8
Q ss_pred ccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
++=|-|+.++++.+.+.-.-. -+-..++-|..+|++|.|||++|+++++ +....| +.+..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH-----
Confidence 344566666666554432110 0225678899999999999999999998 333334 333332
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
+++....++ +...+.+.+.+.=+--+++|+||.++.
T Consensus 503 ---EL~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 503 ---ELFSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred ---HHHHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 223222222 222233333333334678999998854
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.083 Score=60.83 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=53.9
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhc--cCCceEEEEeCCC-CCHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR--HFEIKAWTCVSEE-FDVFRISKSILNSVASDQCTDKDDLNLLQEKLK 250 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 250 (1399)
...++|.++|+.|+||||.+..++....... +-..+..+++... ....+-++...+.++.+.. .....+++...+.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 3467999999999999999998886332211 1123445555432 1233345566666655422 2334455555554
Q ss_pred HHhcCCeEEEEEcccCc
Q 036079 251 KQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 251 ~~l~~k~~LiVlDdv~~ 267 (1399)
+. .+.-+|++|.+-.
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456899998854
No 297
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.0024 Score=66.15 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=59.4
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccch--hhhccccccEEEcCCccccccchh-----hhcc
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPE--SINSLYNLHTILLENCHRLKKLCK-----DMGN 615 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-----~i~~ 615 (1399)
..+++.|++|.|+-|.|+.+ ..|..+++|+.|+|+.|.|..+.+ -+.+|++|++|.|..|...+.-+. .+..
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 56788888898888888887 347788888888888888887643 467788888888877765555443 2456
Q ss_pred cCcccEEE
Q 036079 616 LIKLHHLR 623 (1399)
Q Consensus 616 L~~L~~L~ 623 (1399)
|++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 67777665
No 298
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.034 Score=65.59 Aligned_cols=75 Identities=23% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC--CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF--DVFRISKSILNSVASDQCTDKDDLNLLQEKLKK 251 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 251 (1399)
-...-|.|.|+.|+|||+||+++++... +.....+.+|+++.-. ..+.+++. +...+.+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~------------------l~~vfse 489 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF------------------LNNVFSE 489 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH------------------HHHHHHH
Confidence 3456789999999999999999998543 3444445566655321 11111111 2223445
Q ss_pred HhcCCeEEEEEcccCc
Q 036079 252 QLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 252 ~l~~k~~LiVlDdv~~ 267 (1399)
.++..+-+|||||++-
T Consensus 490 ~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHhhCCcEEEEcchhh
Confidence 5677899999999943
No 299
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.53 E-value=0.013 Score=61.43 Aligned_cols=109 Identities=13% Similarity=0.172 Sum_probs=57.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH-HHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF-RISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
+++.|+|+.|.||||++..+... ........+++--. +.... .-...+..+-. ...+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~-~~E~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIED-PIEFVHESKRSLINQRE-----VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcC-CccccccCccceeeecc-----cCCCccCHHHHHHHHhcC
Confidence 47899999999999999987762 22223334443221 11100 00001111100 111122345567777777
Q ss_pred CeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhh
Q 036079 256 KKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGV 298 (1399)
Q Consensus 256 k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~ 298 (1399)
.+=.|++|++.+. +.+...... ...|..++.|+....+
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 7889999999543 333332222 2345567777765544
No 300
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.029 Score=61.00 Aligned_cols=82 Identities=24% Similarity=0.255 Sum_probs=47.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..+++.++....... . ....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~-----~----~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG-----R----LEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC-----c----hHHHHHHHhh
Confidence 445689999999999999999998543 3223 344543 445555555444321 1 1122222121
Q ss_pred CCeEEEEEcccCccChhhHh
Q 036079 255 GKKFLLVLDDVWNESYNYWS 274 (1399)
Q Consensus 255 ~k~~LiVlDdv~~~~~~~~~ 274 (1399)
+-=|+||||+-......|.
T Consensus 167 -~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 -KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred -cCCEEEEecccCccCCHHH
Confidence 2238999999654444443
No 301
>PRK08233 hypothetical protein; Provisional
Probab=95.53 E-value=0.035 Score=57.73 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+|+|.|.+|+||||+|..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 302
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.037 Score=62.98 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhcc----CCceEEEEeCCCCCHHHHHHHHHHhcc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEEFDVFRISKSILNSVA 232 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~ 232 (1399)
+...++-|+|++|+|||++|.+++........ =..++|++..+.+++.++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45679999999999999999999864322111 1368899998888876654 4445444
No 303
>PRK13695 putative NTPase; Provisional
Probab=95.51 E-value=0.016 Score=59.58 Aligned_cols=22 Identities=45% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++|+|.+|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 304
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.50 E-value=0.063 Score=59.10 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHHHHHhccCCCC--CCcccH-HHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKSILNSVASDQC--TDKDDL-NLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~--~~~~~~-~~~~~~l 249 (1399)
.+.++++++|++|+||||.+..++... ...-..++++++... ....+-+....+..+.+.. ....+. ....+.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 356899999999999999999998633 222234556655431 1223334444555443211 011222 2223444
Q ss_pred HHHhcCCeEEEEEcccC
Q 036079 250 KKQLSGKKFLLVLDDVW 266 (1399)
Q Consensus 250 ~~~l~~k~~LiVlDdv~ 266 (1399)
........=+||+|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44434445578888763
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.49 E-value=0.048 Score=59.22 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC-----------------
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC----------------- 236 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------------- 236 (1399)
+...++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ..++.+++ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456799999999999999999997532 12 2345778887654 44444442 33332110
Q ss_pred --CCcccHHHHHHHHHHHhcC-CeEEEEEcccC
Q 036079 237 --TDKDDLNLLQEKLKKQLSG-KKFLLVLDDVW 266 (1399)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~ 266 (1399)
....+.+++.+.+.+.... +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334566666666653 66689999974
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.48 E-value=0.039 Score=64.35 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=49.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHHHHHhccCCCCC--CcccHHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKSILNSVASDQCT--DKDDLNLLQEKLKK 251 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~ 251 (1399)
++.++.++|.+|+||||.|..++.....+..+ .++.|++... ....+-+.....+++.+... ...++.++.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 46799999999999999998888632212222 3444444422 22334444455555443211 22334444433333
Q ss_pred HhcCCeE-EEEEcccC
Q 036079 252 QLSGKKF-LLVLDDVW 266 (1399)
Q Consensus 252 ~l~~k~~-LiVlDdv~ 266 (1399)
....+.+ +||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3333444 78888764
No 307
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.047 Score=56.19 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=58.3
Q ss_pred CCccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDV 220 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1399)
-+++=|-.+.++++.+...-.-. -+-+.++-|.++|++|.|||-+|++|++ +....|-.++ .
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvi-----g---- 244 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVI-----G---- 244 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeeh-----h----
Confidence 34566777888887776532110 0234567789999999999999999999 5555552221 1
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC-CeEEEEEcccC
Q 036079 221 FRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVW 266 (1399)
Q Consensus 221 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~~LiVlDdv~ 266 (1399)
.++.+..-++. ..+...+.+..++ |-++|++|.++
T Consensus 245 ----selvqkyvgeg-------armvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 ----SELVQKYVGEG-------ARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred ----HHHHHHHhhhh-------HHHHHHHHHHhcccceEEEEeeccc
Confidence 12222221111 2344555555555 55788888874
No 308
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.47 E-value=0.051 Score=61.19 Aligned_cols=59 Identities=17% Similarity=0.041 Sum_probs=40.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchh---c-cCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ---R-HFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
....++.|+|.+|+||||+|.+++...... + .-..++|++..+.++..+ +.++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 456899999999999999999887522211 1 112568999888777765 3445555443
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=95.46 E-value=0.075 Score=59.91 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=49.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCC--CcccHHH-HHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCT--DKDDLNL-LQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~--~~~~~~~-~~~~l~ 250 (1399)
++.++.++|++|+||||++..++.... ...+ .++.+.... .....+-++.....++.+... ...+... ..+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 568999999999999998888886322 2223 233444321 122334455566666543211 1222222 223333
Q ss_pred HHhcCCeEEEEEcccCcc
Q 036079 251 KQLSGKKFLLVLDDVWNE 268 (1399)
Q Consensus 251 ~~l~~k~~LiVlDdv~~~ 268 (1399)
..-....=+|++|-+-..
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 322222238999988543
No 310
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.42 E-value=0.044 Score=56.52 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+++|+|+.|.|||||++.++--
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999863
No 311
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.41 E-value=0.047 Score=62.12 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhc----cCCceEEEEeCCCCCHHHHHHHHHHhcc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEEFDVFRISKSILNSVA 232 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 232 (1399)
....++-|+|.+|+||||+|.+++....... .=..++|++..+.++..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3567999999999999999999976432211 01268899998888877654 4455544
No 312
>PRK10867 signal recognition particle protein; Provisional
Probab=95.39 E-value=0.042 Score=64.15 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+.+|.++|++|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998888876
No 313
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.04 Score=63.02 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|++|+||||+|.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 314
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.38 E-value=0.0092 Score=60.43 Aligned_cols=42 Identities=26% Similarity=0.146 Sum_probs=29.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchh-ccCCceEEEEeCCCCC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~ 219 (1399)
..++.+.|+.|+|||.+|++++. ... +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 35789999999999999999987 333 3344555566554433
No 315
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.37 E-value=0.039 Score=70.30 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=73.9
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
..++|+...+.++.+.+.... .....|.|+|..|+|||++|+.+++... +. -...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~-~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG-RN-NRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC-CC-CCCeEEEecccCC-hhHhhhhhc
Confidence 369999999998887776432 2334689999999999999999987321 11 1233445554432 111222222
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC-----------CCCcEEEEecCCh
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV-----------APGSKIVVTTRNL 296 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtr~~ 296 (1399)
....+... ... ......+. ....=.++||+|..........+...+... ..+.|||.||...
T Consensus 449 g~~~~~~~-g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFT-GAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccc-ccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 21111100 000 01111121 123457999999887666555555444221 1345888888653
No 316
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.34 E-value=0.11 Score=53.78 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=63.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeC--CCCCHHHHH------HHHHHhccCCCC--C---Cccc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS--EEFDVFRIS------KSILNSVASDQC--T---DKDD 241 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~il~~l~~~~~--~---~~~~ 241 (1399)
...+++|+|..|.|||||++.++-.. ....+.+++.-. ...+..+.. .++++.++.... . .-..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34589999999999999999998632 223444443211 111222211 123444443211 0 1111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcccCc-cChhhHhhhcccCCCC-CC-CcEEEEecCChhhhh
Q 036079 242 LNLLQEKLKKQLSGKKFLLVLDDVWN-ESYNYWSILSCPFEAV-AP-GSKIVVTTRNLGVTV 300 (1399)
Q Consensus 242 ~~~~~~~l~~~l~~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~-~~-~s~iivTtr~~~~~~ 300 (1399)
-+...-.+.+.+-..+-++++|+--. .+....+.+...+... .. +..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11222234455667788999998643 2223333333333222 12 567888888766543
No 317
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.32 E-value=2.6 Score=48.89 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.9
Q ss_pred cEEEEEECCCCChHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVY 197 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~ 197 (1399)
..+++|+|++|.||||||+.+.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 3589999999999999999985
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0098 Score=36.53 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.9
Q ss_pred cccEEEecCCcccccCccccCc
Q 036079 548 RLRVFSLHGYCVSKLPNEIGNL 569 (1399)
Q Consensus 548 ~Lr~L~L~~n~i~~lp~~~~~l 569 (1399)
+|++|||++|+++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 319
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.27 E-value=0.075 Score=60.16 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=42.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchh---c-cCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ---R-HFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
....++-|+|.+|+|||++|..++...... + .-..++|++..+.++++++ .++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 456789999999999999998887432211 1 1125889999998888765 455666654
No 320
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.26 E-value=0.066 Score=55.00 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=44.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCC--CCCCcccHHHHH-HHHHHHh
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASD--QCTDKDDLNLLQ-EKLKKQL 253 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~--~~~~~~~~~~~~-~~l~~~l 253 (1399)
++.++|++|+||||+++.++... ...=..++.++..... ...+.+....+..+.+ ......+..++. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999998632 2221234445443221 2333344444443321 111223333333 3344433
Q ss_pred cCCeEEEEEcccCc
Q 036079 254 SGKKFLLVLDDVWN 267 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~ 267 (1399)
....-++|+|..-.
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 44443566777643
No 321
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.22 E-value=0.083 Score=53.79 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=59.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCc---chhcc---CC--ceEEEEeCCCCCHHHHHHHHHHhccCCCC---CCccc--
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDD---RVQRH---FE--IKAWTCVSEEFDVFRISKSILNSVASDQC---TDKDD-- 241 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~-- 241 (1399)
...+++|+|+.|.|||||.+.+..+. .+... |. .++|+ .+ .+.++.++.... .....
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321 11111 10 12232 11 455666654321 01111
Q ss_pred HH-HHHHHHHHHhcCC--eEEEEEcccCc-cChhhHhhhcccCCCC-CCCcEEEEecCChhhhh
Q 036079 242 LN-LLQEKLKKQLSGK--KFLLVLDDVWN-ESYNYWSILSCPFEAV-APGSKIVVTTRNLGVTV 300 (1399)
Q Consensus 242 ~~-~~~~~l~~~l~~k--~~LiVlDdv~~-~~~~~~~~l~~~~~~~-~~~s~iivTtr~~~~~~ 300 (1399)
-. ...-.+.+.+-.+ +-++++|+--. .+....+.+...+... ..|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11 1222334444456 67888898633 2222233333322221 24667888888876643
No 322
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.21 E-value=0.053 Score=56.85 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=51.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhcc-------CCCCCCcccHHH---
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVA-------SDQCTDKDDLNL--- 244 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~-------~~~~~~~~~~~~--- 244 (1399)
..-++|.|.+|+|||+|+.++.+.. .-+.++++.+++.. ...++.+++...=. ....+++.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3567999999999999999998742 23445888887664 45566666544311 111111111110
Q ss_pred -HHHHHHHHh--cCCeEEEEEccc
Q 036079 245 -LQEKLKKQL--SGKKFLLVLDDV 265 (1399)
Q Consensus 245 -~~~~l~~~l--~~k~~LiVlDdv 265 (1399)
..-.+.+++ +++++|+|+||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111122333 689999999999
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.081 Score=59.49 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=55.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQ 252 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 252 (1399)
.+.++++|+|+.|+||||++..++.....+ -..+.++++.... ...+-++...+.++.+.. ...+..++.+.+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHH
Confidence 356899999999999999999998633222 2346666665332 334555666666654332 234455565555443
Q ss_pred hc-CCeEEEEEcccCc
Q 036079 253 LS-GKKFLLVLDDVWN 267 (1399)
Q Consensus 253 l~-~k~~LiVlDdv~~ 267 (1399)
-. +..=+|++|-+-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 3446788887743
No 324
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.15 E-value=0.11 Score=51.92 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=60.5
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC---CCCHHHHHHHHHH---hccCC----CCCCccc---HH
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE---EFDVFRISKSILN---SVASD----QCTDKDD---LN 243 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~---~l~~~----~~~~~~~---~~ 243 (1399)
..|-|++..|.||||.|..++... ....+ .++.+..-. .......+..+.- +.+.. ..+...+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 578888889999999998877532 12222 233222222 2233333333200 00110 0001111 12
Q ss_pred HHHHHHHHHhcC-CeEEEEEcccCcc---ChhhHhhhcccCCCCCCCcEEEEecCCh
Q 036079 244 LLQEKLKKQLSG-KKFLLVLDDVWNE---SYNYWSILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 244 ~~~~~l~~~l~~-k~~LiVlDdv~~~---~~~~~~~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
+..+..++.+.. +-=++|||.+-.. .....+++...+...+.+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 223333444444 4459999998321 1122345555555666778999999985
No 325
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.14 E-value=0.026 Score=55.28 Aligned_cols=36 Identities=31% Similarity=0.192 Sum_probs=26.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEE
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 213 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1399)
..+|.|+|.+|+||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 3433334455554
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.13 E-value=0.11 Score=51.19 Aligned_cols=106 Identities=17% Similarity=0.094 Sum_probs=55.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 255 (1399)
..+++|+|..|.|||||++.+.... ....+.+|+.... .++.-.. -... +...-.+.+.+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~~-lS~G-~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFEQ-LSGG-EKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEcc-CCHH-HHHHHHHHHHHhc
Confidence 3689999999999999999998632 1223444432100 0000000 0011 1122234455556
Q ss_pred CeEEEEEcccCc-cChhhHhhhcccCCCCCCCcEEEEecCChhhhhc
Q 036079 256 KKFLLVLDDVWN-ESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVN 301 (1399)
Q Consensus 256 k~~LiVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~ 301 (1399)
++-++++|+--. .+....+.+...+... +..||++|.+......
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 777899998633 2223333333333222 2468888877665433
No 327
>PRK05439 pantothenate kinase; Provisional
Probab=95.12 E-value=0.1 Score=57.84 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=45.9
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcCcchhcc--CCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--FEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLK 250 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 250 (1399)
...+-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-....+.+.+- ..+......+.-+.+.+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 356789999999999999999988762 2221 1234445444433333222210 1111111124556666777776
Q ss_pred HHhcCCe
Q 036079 251 KQLSGKK 257 (1399)
Q Consensus 251 ~~l~~k~ 257 (1399)
..-+++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 328
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.12 E-value=0.3 Score=52.49 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=77.6
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
.+.|+|-..- +++..++... ....+.+.|+|+.|+|||+-++.+++. .+..+.+..+..++...++..+
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A----~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPA----SKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILII 139 (297)
T ss_pred cccccccchh-HhHhhhhhhh----hhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHH
Confidence 3456665442 3344444332 223348899999999999999999973 2334445666667777766666
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccC
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPF 280 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~ 280 (1399)
........ .....+....+...+++..-+|+.|+.+......++.+....
T Consensus 140 ~~~~~~~~---~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 140 CAAAFGAT---DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHHhccc---chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 66555442 233444555666667889999999999887777777765544
No 329
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.094 Score=53.64 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||.+.++.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 345899999999999999999986
No 330
>PHA02244 ATPase-like protein
Probab=95.06 E-value=0.073 Score=59.69 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
-|.|+|++|+|||++|+++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999997
No 331
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.04 E-value=0.1 Score=56.62 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=34.7
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
+...++.|.|.+|+|||++|.++..... ..-..++|++... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHH
Confidence 4568999999999999999999875321 2235678888655 44455444
No 332
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.04 E-value=0.11 Score=65.10 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=80.4
Q ss_pred CccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.++.|.+...+++.+.+..... ....-.+-+.|+|++|+|||++|+.++... ...| +.++.+ +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~------~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGS------D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehH------H
Confidence 3567877666665554432110 011123458999999999999999998732 2222 222211 1
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccC----------hhhHh----hhcccCCC--CCCC
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNES----------YNYWS----ILSCPFEA--VAPG 286 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~----------~~~~~----~l~~~~~~--~~~~ 286 (1399)
+. ..... .....+.+.+...-...+++|++|+++... ...+. .+...+.. ...+
T Consensus 221 ~~----~~~~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FV----EMFVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hH----Hhhhc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 11101 111223333333344578999999985521 01111 11111111 1234
Q ss_pred cEEEEecCChhhhhcc----C-CCCceecCCCChhhHHHHHHHhhc
Q 036079 287 SKIVVTTRNLGVTVNM----G-ADPAYQLKELSNDDCLCVLTQISL 327 (1399)
Q Consensus 287 s~iivTtr~~~~~~~~----~-~~~~~~l~~l~~~~~~~l~~~~~~ 327 (1399)
.-||.||..++..... + -...+.+..-+.++-.++++.+..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 4555577765532221 1 124577888888888888877653
No 333
>PRK07667 uridine kinase; Provisional
Probab=95.03 E-value=0.044 Score=57.21 Aligned_cols=37 Identities=16% Similarity=0.421 Sum_probs=29.1
Q ss_pred HHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 158 KEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 158 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+.+.+.+... .+...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666666543 23558999999999999999999987
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.032 Score=56.75 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.01 E-value=0.16 Score=56.79 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=36.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSV 231 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 231 (1399)
...++.|.|.+|+||||+|.+++..... .+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 3458899999999999999999864322 2124577887655 3455555555443
No 336
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.00 E-value=0.047 Score=66.64 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=74.9
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
...++|+...++++.+.+.... .....|.|+|..|+|||++|+.+++... ..-...+.+++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 4569999999999998887642 2345688999999999999999997321 1112344555554432 1111222
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCC-----------CCcEEEEecCC
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVA-----------PGSKIVVTTRN 295 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtr~ 295 (1399)
.....+... .... .....+. ....--|+||++..........+...+.... ...|||.||..
T Consensus 259 fG~~~g~~~-ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFT-GAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccC-CCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 221111100 0000 0000111 1122347899998877666666655443221 24588888865
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.1 Score=65.22 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=70.0
Q ss_pred CccccchhhHHHHHHHHhccCcCCC--CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRAD--DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
..++|-++.+..|.+.+........ .....+.+.|+.|+|||.||++++. -+-+..+..+-++.+ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 3578888888888888875432111 1456778899999999999999986 222222333333333 3222
Q ss_pred HHHhccCCCC-CCcccHHHHHHHHHHHhcCCeE-EEEEcccCccChhhHhhhccc
Q 036079 227 ILNSVASDQC-TDKDDLNLLQEKLKKQLSGKKF-LLVLDDVWNESYNYWSILSCP 279 (1399)
Q Consensus 227 il~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~~-LiVlDdv~~~~~~~~~~l~~~ 279 (1399)
+.+.++.+.. .... ....+.+.++.++| +|+||||+..+.+....+...
T Consensus 633 vskligsp~gyvG~e----~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~ 683 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKE----EGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQL 683 (898)
T ss_pred hhhccCCCcccccch----hHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHH
Confidence 3333333221 1112 22356666677776 667899988776665544333
No 338
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.94 E-value=0.029 Score=59.42 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.++++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 339
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.94 E-value=0.026 Score=57.11 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC--CCcccHHHHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC--TDKDDLNLLQEKLKKQLSG 255 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~l~~~l~~ 255 (1399)
++.|.|.+|+||||+|..++... .. .++++...... -.+..+.|..+...... ...+....+...+..+..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999998631 11 23444433333 33455555444332211 0111122344445443332
Q ss_pred CeEEEEEccc
Q 036079 256 KKFLLVLDDV 265 (1399)
Q Consensus 256 k~~LiVlDdv 265 (1399)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337899986
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.94 E-value=0.077 Score=56.34 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=71.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-----CCCHHHHHHHHHHhccCCCCC------CcccHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-----EFDVFRISKSILNSVASDQCT------DKDDLN 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~~------~~~~~~ 243 (1399)
+..+++|+|.+|.||||+|+.+.. ....-.+.++..... .....+-..++++.++..... +-..-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 446899999999999999999986 223233444443221 222344556667766643210 111111
Q ss_pred HHHHHHHHHhcCCeEEEEEcccCccChh-hHhhhcccCC--CCCCCcEEEEecCChhhhhccCC
Q 036079 244 LLQEKLKKQLSGKKFLLVLDDVWNESYN-YWSILSCPFE--AVAPGSKIVVTTRNLGVTVNMGA 304 (1399)
Q Consensus 244 ~~~~~l~~~l~~k~~LiVlDdv~~~~~~-~~~~l~~~~~--~~~~~s~iivTtr~~~~~~~~~~ 304 (1399)
...-.+.+.+.-++-+||.|..-..-+. ....+...+. ....|-..++.|.+-.++..++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 1223456677889999999986442111 1112222221 12346678888888777666543
No 341
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.86 E-value=0.074 Score=53.82 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=59.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC--CCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE--FDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..+++|+|+.|.|||||.+.++-.. ....+.+++.-..- .+..+..+ +.++... +-..-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHH
Confidence 3589999999999999999998632 22344454432111 11111111 1111110 0111112222344455
Q ss_pred cCCeEEEEEcccCc-cChhhHhhhcccCCCC-CCCcEEEEecCChhhhh
Q 036079 254 SGKKFLLVLDDVWN-ESYNYWSILSCPFEAV-APGSKIVVTTRNLGVTV 300 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~-~~~s~iivTtr~~~~~~ 300 (1399)
-.++-++++|+--. .+....+.+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56778889998643 2222233333333221 23667888888866433
No 342
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.85 E-value=0.12 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.5
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+..+++|.|++|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999986
No 343
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.84 E-value=0.11 Score=56.51 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+..|+|++|+|||+||.+++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999975
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.83 E-value=0.036 Score=60.63 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.2
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999873
No 345
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.83 E-value=0.035 Score=61.37 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=44.9
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...|+|.++.++++++.+.......+.+-+|+.++|+-|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999876554567789999999999999999999986
No 346
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.83 E-value=0.13 Score=56.68 Aligned_cols=80 Identities=23% Similarity=0.166 Sum_probs=43.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccC-C-ceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-E-IKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKK 251 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 251 (1399)
..+.+|+|.|..|+||||+|+.+..- ..... . .+..++...-....+.+... ..+........-+.+.+.+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 45689999999999999999877641 21111 1 24445544433333332221 11111112245566666666666
Q ss_pred HhcCC
Q 036079 252 QLSGK 256 (1399)
Q Consensus 252 ~l~~k 256 (1399)
.-+++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65554
No 347
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.80 E-value=0.079 Score=56.27 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=66.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcc-----hh------ccC---CceEEEEeCCC----C--CH---------------
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDR-----VQ------RHF---EIKAWTCVSEE----F--DV--------------- 220 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~------~~f---~~~~wv~~~~~----~--~~--------------- 220 (1399)
..+++|+|+.|.|||||.+.+.--.. +. ..+ ..+.||.=... + ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36999999999999999999975211 10 001 23445432111 1 11
Q ss_pred -------HHHHHHHHHhccCCCCC-----CcccHHHHHHHHHHHhcCCeEEEEEccc----CccChhhHhhhcccCCCCC
Q 036079 221 -------FRISKSILNSVASDQCT-----DKDDLNLLQEKLKKQLSGKKFLLVLDDV----WNESYNYWSILSCPFEAVA 284 (1399)
Q Consensus 221 -------~~~~~~il~~l~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LiVlDdv----~~~~~~~~~~l~~~~~~~~ 284 (1399)
.+...+.+++++..... +-..=+...-.+.+.|..++=|+|||.- +.......-++...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 24444555555543210 1111122223456677888999999963 32322233333333333
Q ss_pred CCcEEEEecCChhhhh
Q 036079 285 PGSKIVVTTRNLGVTV 300 (1399)
Q Consensus 285 ~~s~iivTtr~~~~~~ 300 (1399)
.|.-|+++|.|-....
T Consensus 188 eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 EGKTVLMVTHDLGLVM 203 (254)
T ss_pred CCCEEEEEeCCcHHhH
Confidence 2788999999865443
No 348
>PTZ00035 Rad51 protein; Provisional
Probab=94.77 E-value=0.17 Score=57.65 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=40.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchh---c-cCCceEEEEeCCCCCHHHHHHHHHHhccC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ---R-HFEIKAWTCVSEEFDVFRISKSILNSVAS 233 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 233 (1399)
+...++.|+|.+|+|||||+..++-..+.. + .=..++|++....+++.+ +.++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 456899999999999999999887432211 1 112466998877777666 3444555443
No 349
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.76 E-value=0.19 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|+.|.|||||++.+.-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.76 E-value=0.13 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999986
No 351
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.77 Score=47.26 Aligned_cols=51 Identities=29% Similarity=0.221 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHhccC-------cCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDD-------LRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++=|.+-...++.+...-.- .-+-+.++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345566666666666552110 013356778899999999999999999984
No 352
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.71 E-value=0.13 Score=59.27 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=50.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
...++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++. .-+++++..... ...+.+++.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 45799999999999999999998632 222245778765433 33332 223445432211 1233444444443
Q ss_pred HHhcCCeEEEEEcccC
Q 036079 251 KQLSGKKFLLVLDDVW 266 (1399)
Q Consensus 251 ~~l~~k~~LiVlDdv~ 266 (1399)
+.+.-+||+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2466789999983
No 353
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.24 Score=60.73 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=73.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
...+.+.++|++|.|||.||+++++ ..+..|- .+... .++.... ......+.+.+...-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~--------~l~sk~v------Gesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS--------ELLSKWV------GESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH--------HHhcccc------chHHHHHHHHHHHHH
Confidence 3556899999999999999999998 3333442 22111 1221111 112223333444444
Q ss_pred cCCeEEEEEcccCccC-----------hhhHhhhcccCC--CCCCCcEEEEecCChhhhhcc-----CCCCceecCCCCh
Q 036079 254 SGKKFLLVLDDVWNES-----------YNYWSILSCPFE--AVAPGSKIVVTTRNLGVTVNM-----GADPAYQLKELSN 315 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~-----------~~~~~~l~~~~~--~~~~~s~iivTtr~~~~~~~~-----~~~~~~~l~~l~~ 315 (1399)
+..++.|++|+++.-. ......+...+. ....+..||-||-.+...... .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 5789999999985410 011222222232 112333344455444332211 1123578888899
Q ss_pred hhHHHHHHHhhc
Q 036079 316 DDCLCVLTQISL 327 (1399)
Q Consensus 316 ~~~~~l~~~~~~ 327 (1399)
++..+.|..+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998873
No 354
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.70 E-value=0.11 Score=54.53 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=42.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCC---ceEEEEeCCCCCHHHHHHHHHHhccC---CCCCCcccHHHHHHHHHH
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFE---IKAWTCVSEEFDVFRISKSILNSVAS---DQCTDKDDLNLLQEKLKK 251 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l~~---~~~~~~~~~~~~~~~l~~ 251 (1399)
||+|.|++|+||||+|+++...... .... ....+....-......... -..... -......+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999873211 1122 1333333332222222111 111111 111245667777777777
Q ss_pred HhcCCeEE
Q 036079 252 QLSGKKFL 259 (1399)
Q Consensus 252 ~l~~k~~L 259 (1399)
..+++..-
T Consensus 79 L~~g~~i~ 86 (194)
T PF00485_consen 79 LKNGGSIE 86 (194)
T ss_dssp HHTTSCEE
T ss_pred HhCCCccc
Confidence 66666543
No 355
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.70 E-value=0.1 Score=53.00 Aligned_cols=119 Identities=16% Similarity=0.050 Sum_probs=62.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC---CCCHHHHHHHH--HHhc--cCC----CCCCcccH--
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE---EFDVFRISKSI--LNSV--ASD----QCTDKDDL-- 242 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i--l~~l--~~~----~~~~~~~~-- 242 (1399)
...|.|+|..|-||||.|..++.. ..++=-.+..+.+-. .......+..+ +... +.. ..+...+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 368999999999999999887752 222212233333322 22333333321 0000 110 00011111
Q ss_pred -HHHHHHHHHHhcC-CeEEEEEcccCcc---ChhhHhhhcccCCCCCCCcEEEEecCCh
Q 036079 243 -NLLQEKLKKQLSG-KKFLLVLDDVWNE---SYNYWSILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 243 -~~~~~~l~~~l~~-k~~LiVlDdv~~~---~~~~~~~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
.+..+..++.+.+ +-=++|||.+-.. .....+++...+...+.+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223333444544 4459999998331 1223455556665666778999999985
No 356
>PTZ00301 uridine kinase; Provisional
Probab=94.69 E-value=0.052 Score=56.97 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 357
>PRK06547 hypothetical protein; Provisional
Probab=94.66 E-value=0.041 Score=55.82 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.....+|+|.|++|+||||+|+.++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999863
No 358
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.63 E-value=0.2 Score=56.47 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=33.6
Q ss_pred ceecCCCChhhHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHcCCChHHH
Q 036079 307 AYQLKELSNDDCLCVLTQISLGARDFSMHQSLKEVGEKIAMKCKGLPLAA 356 (1399)
Q Consensus 307 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 356 (1399)
++++++++.+|+..++.-++-..-- ......+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6899999999999999877632211 111334556677777779999654
No 359
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.61 E-value=0.079 Score=60.39 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhccCc--------CCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDDL--------RADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++|.++.+..+.-.+..... .....++-|.++|++|+|||++|+.++..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4588998888888766653200 01123467899999999999999999873
No 360
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.60 E-value=0.024 Score=47.45 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+++|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 361
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.60 E-value=0.02 Score=59.73 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=39.6
Q ss_pred cCCCccEEEEccCCCccccCCccCCCcccEEEccCCC--ccccCccccccCccCCcceEEecCCCC--ccccCCCCCCCC
Q 036079 981 TLSSLTEMRIAHCTSLISFPEAALPSRLRTIDIEGCN--ALKSLPEAWMHNSYSSLQSLKIRYCKS--LVSFPEVSLPSR 1056 (1399)
Q Consensus 981 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~Ls~~~--~l~~~~~~~~~~~l~~L~~L~ls~~~~--l~~~~~~~~~~~ 1056 (1399)
.+..|+.|++.++ .++++..+..+++|++|.++.|+ ....++.... .+|+|++|++++|.. +..++....+.+
T Consensus 41 ~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhh--hCCceeEEeecCCccccccccchhhhhcc
Confidence 3444555555542 33333344456677777777773 2222332222 256777777776542 122233333444
Q ss_pred CcEEEecCC
Q 036079 1057 LRTIEIEGC 1065 (1399)
Q Consensus 1057 L~~L~l~~c 1065 (1399)
|..|++.+|
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 555555544
No 362
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.60 E-value=0.11 Score=56.17 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=55.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcch--hccCCceEEEEeCCCC-CHHHHHHHHHHhccCCC-------CCCcccHH-
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRV--QRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQ-------CTDKDDLN- 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~- 243 (1399)
+.+-++|.|-+|+|||+|+.++.+.... +.+-+.++++-+++.. ...++..++.+.=.... .+++.-..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456799999999999999998874321 1234678888888775 45566666554311110 10111111
Q ss_pred ---HHHHHHHHHh---cCCeEEEEEcccCc
Q 036079 244 ---LLQEKLKKQL---SGKKFLLVLDDVWN 267 (1399)
Q Consensus 244 ---~~~~~l~~~l---~~k~~LiVlDdv~~ 267 (1399)
...-.+.+++ +++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1112234444 37899999999943
No 363
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.05 Score=52.19 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=32.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCC
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASD 234 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 234 (1399)
+|.|.|++|.||||+|+.+++..... | + +.-.+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999743221 1 1 2336778888887654
No 364
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.50 E-value=0.0026 Score=64.04 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=71.8
Q ss_pred cCCCCcccEEEecCCcccccCccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEE
Q 036079 543 LLNLPRLRVFSLHGYCVSKLPNEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHL 622 (1399)
Q Consensus 543 ~~~l~~Lr~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 622 (1399)
+..+...++||++.|++..+-..|+.++.|..||++.|.|..+|..++.+..++.+++.+ +.....|.+++.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 556778888999888888887788888888899999888888898888888888888877 4678888888888888888
Q ss_pred EcCCCc
Q 036079 623 RNSNVD 628 (1399)
Q Consensus 623 ~l~~n~ 628 (1399)
++-.|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 887776
No 365
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.47 E-value=0.024 Score=57.34 Aligned_cols=25 Identities=48% Similarity=0.525 Sum_probs=22.3
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDD 200 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~ 200 (1399)
..+|+|-||-|+||||||+.+++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 3689999999999999999999843
No 366
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.45 E-value=0.11 Score=55.20 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 367
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.43 E-value=0.052 Score=59.74 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCC
Q 036079 159 EAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTD 238 (1399)
Q Consensus 159 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~ 238 (1399)
..+++.+... .+-+.++|+.|+|||++++....... ...| .+.-++.+...+...++..+-..+..... .
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~-~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG-R 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-E
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-C
Confidence 4455555432 25679999999999999999876321 1111 13345555554444433222111111100 0
Q ss_pred cccHHHHHHHHHHHhcCCeEEEEEcccCccChhh
Q 036079 239 KDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNY 272 (1399)
Q Consensus 239 ~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~ 272 (1399)
...--.+|+.++++||+.-...+.
T Consensus 93 ----------~~gP~~~k~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 93 ----------VYGPPGGKKLVLFIDDLNMPQPDK 116 (272)
T ss_dssp ----------EEEEESSSEEEEEEETTT-S---T
T ss_pred ----------CCCCCCCcEEEEEecccCCCCCCC
Confidence 000013689999999995544333
No 368
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.40 E-value=0.082 Score=64.54 Aligned_cols=134 Identities=11% Similarity=-0.024 Sum_probs=70.3
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH-H
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS-I 227 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-i 227 (1399)
..++|....+.++++.+.... .....|.|+|..|+||+.+|+.++... .+ .-...+.+++..-. .+.+.. +
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~--~~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP--DDVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC--HHHHHHHh
Confidence 468999988888887775432 122347899999999999999987521 11 11223455555433 222222 2
Q ss_pred HHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCC-----------CCCcEEEEecCCh
Q 036079 228 LNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAV-----------APGSKIVVTTRNL 296 (1399)
Q Consensus 228 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtr~~ 296 (1399)
.....+... ... +...-+.+ +...-.|+||+++.........+...+... ....|||.||...
T Consensus 276 FG~~~~~~~-~~~---~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYP-NAL---EGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcC-Ccc---cCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 211111000 000 00000111 112335789999887665555554444321 1234788877653
No 369
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.35 E-value=0.026 Score=54.68 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 036079 179 ISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~ 199 (1399)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 370
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.35 E-value=0.13 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 371
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.19 Score=56.24 Aligned_cols=84 Identities=24% Similarity=0.244 Sum_probs=52.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
...++.|-|-+|||||||..+++.+ ....- .+.||+..+. ..++ +--+++++..... ...+++++.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4579999999999999999999984 33333 6777765444 3333 2224455433221 2234444444443
Q ss_pred HHhcCCeEEEEEcccCc
Q 036079 251 KQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 251 ~~l~~k~~LiVlDdv~~ 267 (1399)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6889999999843
No 372
>PRK13948 shikimate kinase; Provisional
Probab=94.30 E-value=0.28 Score=50.20 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+.|.++|+.|+||||+++.++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999987
No 373
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.28 E-value=0.05 Score=58.01 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
-|.|+|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999986
No 374
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.26 E-value=0.19 Score=54.98 Aligned_cols=128 Identities=15% Similarity=0.045 Sum_probs=65.4
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC 236 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 236 (1399)
..+.++..+... ...+-++|+|+.|.||||+.+.++... ......+|+.-. .....+...++......-..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGK-KVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCE-EeecchhHHHHHHHhccccc
Confidence 344555555431 234689999999999999999999632 222334443211 11111111223222211100
Q ss_pred C-------CcccHHHHHHHHHHHhc-CCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCChhhh
Q 036079 237 T-------DKDDLNLLQEKLKKQLS-GKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNLGVT 299 (1399)
Q Consensus 237 ~-------~~~~~~~~~~~l~~~l~-~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~ 299 (1399)
. ..+.... ...+...+. ..+=++|+|.+-. ...+..+...+ ..|..||+||.+..+.
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 0 0011111 112232322 5788999999843 34455444443 2577899999876553
No 375
>PHA00729 NTP-binding motif containing protein
Probab=94.25 E-value=0.053 Score=56.68 Aligned_cols=25 Identities=48% Similarity=0.537 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+...|.|+|.+|+||||||.++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999873
No 376
>PRK08006 replicative DNA helicase; Provisional
Probab=94.20 E-value=1 Score=53.97 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=45.1
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhc
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSV 231 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 231 (1399)
.|.......+-+.+.+ =....++.|-|.+|+|||++|..++.....+... .++++ +-.-+..++...++...
T Consensus 205 ~Gi~TG~~~LD~~~~G-----l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~-~V~~f--SlEM~~~ql~~Rlla~~ 276 (471)
T PRK08006 205 TGVNTGYDDLNKKTAG-----LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDK-PVLIF--SLEMPGEQIMMRMLASL 276 (471)
T ss_pred CcccCCCHHHHHhhcC-----CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-eEEEE--eccCCHHHHHHHHHHHh
Confidence 3444444444444422 2344688899999999999999988643322222 23443 44567778887777665
Q ss_pred c
Q 036079 232 A 232 (1399)
Q Consensus 232 ~ 232 (1399)
.
T Consensus 277 ~ 277 (471)
T PRK08006 277 S 277 (471)
T ss_pred c
Confidence 3
No 377
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.19 E-value=0.09 Score=58.39 Aligned_cols=87 Identities=23% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 249 (1399)
+..+++-|+|+.|+||||||..+.. +.+..-..++|++....+++... +.++..... .++..++..+..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 4567999999999999999999886 33344456889998887766432 333332111 223344455555
Q ss_pred HHHhc-CCeEEEEEcccCc
Q 036079 250 KKQLS-GKKFLLVLDDVWN 267 (1399)
Q Consensus 250 ~~~l~-~k~~LiVlDdv~~ 267 (1399)
.+.++ +.--+||+|.|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 55554 3456889998843
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.25 Score=61.31 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=51.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..+|++++|+.|+||||.+..++...........+..+.... .....+-++...+.++.+.. ...+.+++.+.+.+ +
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 357999999999999999999986432221122345555432 22244555666666655432 23345555555543 3
Q ss_pred cCCeEEEEEcccC
Q 036079 254 SGKKFLLVLDDVW 266 (1399)
Q Consensus 254 ~~k~~LiVlDdv~ 266 (1399)
+++ =+|++|-.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 444 367777653
No 379
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.44 Score=57.41 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=59.7
Q ss_pred CccccchhhHHHHHHHHhccCc------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
+++=|-++.+..|.+.+.-.-. .+-.+..-|.+||++|.|||-+|++|+.. .. ..|++|-++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 3466778888888877642100 01122456789999999999999999973 22 234555544
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
+++...-++ +.+.+.+.+.+.=+.++++|+||.++.
T Consensus 740 ---ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 333322222 222333444444446999999999966
No 380
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.17 E-value=0.054 Score=56.76 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=59.6
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC--CcccHHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT--DKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~~l 253 (1399)
.++++|.|+.|.||||+.+.++... +..+ ...++.+.. ..-.+...|...++..... .......-..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999886421 1111 111221111 0112223333333332110 0001111111122222
Q ss_pred --cCCeEEEEEcccCcc-Chhh----HhhhcccCCCCCCCcEEEEecCChhhhhccC
Q 036079 254 --SGKKFLLVLDDVWNE-SYNY----WSILSCPFEAVAPGSKIVVTTRNLGVTVNMG 303 (1399)
Q Consensus 254 --~~k~~LiVlDdv~~~-~~~~----~~~l~~~~~~~~~~s~iivTtr~~~~~~~~~ 303 (1399)
..++-|+++|+.... +..+ ...+...+. ..|..+|+||.+.+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 357889999997432 1111 112222222 23788999999988876554
No 381
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.25 Score=50.64 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=59.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccC--CCCC--Cc--------ccH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVAS--DQCT--DK--------DDL 242 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~~--~~--------~~~ 242 (1399)
...+++|+|+.|.|||||++.++-.. ....+.+++.-....+.. ..+...++. +... .. -+-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34589999999999999999998632 122344443211100000 011111111 0000 00 011
Q ss_pred HH-HHHHHHHHhcCCeEEEEEcccCcc-ChhhHhhhcccCCCC-CCCcEEEEecCChhhhhc
Q 036079 243 NL-LQEKLKKQLSGKKFLLVLDDVWNE-SYNYWSILSCPFEAV-APGSKIVVTTRNLGVTVN 301 (1399)
Q Consensus 243 ~~-~~~~l~~~l~~k~~LiVlDdv~~~-~~~~~~~l~~~~~~~-~~~s~iivTtr~~~~~~~ 301 (1399)
.+ ..-.+...+..++=++++|+--.. +....+.+...+... ..|..||++|.+......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 11 222345556678889999987432 222223333333221 236678888888765443
No 382
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.16 E-value=0.042 Score=58.30 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 383
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.15 E-value=0.19 Score=58.20 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=36.0
Q ss_pred CCccccchhhHHHHHHHHhc------c--CcCCC----CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 148 EAKVYGREKDKEAIVELLLR------D--DLRAD----DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~----~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+..++|.++.++.+...+.. . ....+ -....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45689999988888766521 0 00000 1135789999999999999999986
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.15 E-value=0.11 Score=59.42 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHHHhccC--------cCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 148 EAKVYGREKDKEAIVELLLRDD--------LRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+..++|.++.++.+..++.... .......+.+.++|++|+|||++|+.++..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999888885410 001112467899999999999999999873
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.15 E-value=0.024 Score=52.78 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHhcCcchhccCC
Q 036079 179 ISINGMGGVGKTTLAQLVYNDDRVQRHFE 207 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~ 207 (1399)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 4555554
No 386
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.15 E-value=0.043 Score=58.42 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhc
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+..+|+|+|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 387
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.13 E-value=0.36 Score=50.56 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCeEEEEEcccCc-cChhhHhhhcccCCCC--CCCcEEEEecCChhhhhccC
Q 036079 244 LLQEKLKKQLSGKKFLLVLDDVWN-ESYNYWSILSCPFEAV--APGSKIVVTTRNLGVTVNMG 303 (1399)
Q Consensus 244 ~~~~~l~~~l~~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~--~~~s~iivTtr~~~~~~~~~ 303 (1399)
+..-.+.+.+-..+-+|+.|+=-. .+...-+.+...+... ..|.-||+.|.++.++..+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344456677778888999997422 1112222333333322 34778999999999987543
No 388
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.11 E-value=0.14 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999973
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.07 E-value=0.16 Score=58.89 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+++|.++|+.|+||||+|..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999998863
No 390
>PRK04328 hypothetical protein; Provisional
Probab=94.06 E-value=0.13 Score=56.18 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE 217 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 217 (1399)
+...++.|.|.+|+|||+||.++.... . ..-..++|++..+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 356799999999999999999987632 2 22355788887664
No 391
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.2 Score=58.09 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=46.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
...+++++|+.|+||||++..++.........+.+.++.... .....+-+....+.++.+.. ...+..+....+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKDIADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCCHHHHHHHHHH-h
Confidence 347999999999999999998875221111223344444332 22334444555555554432 22333333333332 3
Q ss_pred cCCeEEEEEccc
Q 036079 254 SGKKFLLVLDDV 265 (1399)
Q Consensus 254 ~~k~~LiVlDdv 265 (1399)
+++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 443 45667765
No 392
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.05 E-value=0.23 Score=58.61 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=47.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
+.+|++++|+.|+||||++..++.....+..-..+..+.... .....+-++...+.++.... ...+..+....+ ..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~L 332 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SEL 332 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-Hhc
Confidence 347999999999999999999986332222122345555433 22344445555555544322 111222222222 233
Q ss_pred cCCeEEEEEcccC
Q 036079 254 SGKKFLLVLDDVW 266 (1399)
Q Consensus 254 ~~k~~LiVlDdv~ 266 (1399)
+++ ..+++|-.-
T Consensus 333 ~d~-d~VLIDTaG 344 (484)
T PRK06995 333 RNK-HIVLIDTIG 344 (484)
T ss_pred cCC-CeEEeCCCC
Confidence 444 477788763
No 393
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.05 E-value=0.094 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3678899999999999999987
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.02 E-value=0.14 Score=50.81 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 395
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.15 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||++.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999985
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.00 E-value=0.093 Score=53.91 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 397
>PRK06762 hypothetical protein; Provisional
Probab=93.98 E-value=0.041 Score=56.06 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.2
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+++|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.97 E-value=0.077 Score=50.57 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCc
Q 036079 156 KDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDD 200 (1399)
Q Consensus 156 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 200 (1399)
++.+++.+.+... -....+|++.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~----l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKP----LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHh----CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455555555432 1234589999999999999999999743
No 399
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.94 E-value=0.19 Score=52.48 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=38.6
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceE---------EEEeCCCCCHHHH--HHHHHHhccCCC
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKA---------WTCVSEEFDVFRI--SKSILNSVASDQ 235 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~---------wv~~~~~~~~~~~--~~~il~~l~~~~ 235 (1399)
..++.+|.++||+|.||||..++++.... ..+..-. -+....+.++++. +++.+++...++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 34567889999999999999999986432 2222111 1223344456553 466777776654
No 400
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.90 E-value=1.1 Score=49.44 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=46.9
Q ss_pred cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCCh-hhhhc-cCCCCceecCCCChhhHHHHHHH
Q 036079 254 SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRNL-GVTVN-MGADPAYQLKELSNDDCLCVLTQ 324 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~ 324 (1399)
.+++-++|+|+++......+..+...+...+.++.+|++|.+. .+... .+..+.+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3567799999999988888888887777666677777777654 33222 22234577766 66666666653
No 401
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.89 E-value=0.2 Score=57.91 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=52.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHHHHhccCCC------CCCcccHHH---
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSILNSVASDQ------CTDKDDLNL--- 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~~--- 244 (1399)
....++|+|..|+|||||++.++... ..+.++.+-+++... +.++..+++..-+... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 44678999999999999999998632 224566677776653 4455555544321110 001111111
Q ss_pred --HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 245 --LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 --~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112234444 58999999999943
No 402
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.89 E-value=0.043 Score=54.34 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|.+.|++|+||||+|+++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 403
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.87 E-value=0.031 Score=58.70 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=27.7
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccC--------CceEEEEeCCC
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHF--------EIKAWTCVSEE 217 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 217 (1399)
.++.|+|++|+||||++.+++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999999998643322222 25778876665
No 404
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.83 E-value=0.14 Score=59.97 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=56.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCC------CCCcccHH----
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQ------CTDKDDLN---- 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~---- 243 (1399)
+.+-++|.|.+|+|||||+.+++.... +.+-+.++++-+++.. .+.++..++...=.... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 445789999999999999998887432 2245677788777665 45566666654321110 00111111
Q ss_pred -HHHHHHHHHh---cCCeEEEEEcccCc
Q 036079 244 -LLQEKLKKQL---SGKKFLLVLDDVWN 267 (1399)
Q Consensus 244 -~~~~~l~~~l---~~k~~LiVlDdv~~ 267 (1399)
...-.+.+++ +++++|+++|++-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1222344554 37999999999933
No 405
>COG4240 Predicted kinase [General function prediction only]
Probab=93.80 E-value=0.2 Score=50.83 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=58.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhcc----CCCCCCcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVA----SDQCTDKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~----~~~~~~~~~~~~~~~~l 249 (1399)
+++-+++|.|+-|.||||+|..++.....++- ..++..+...-+-..+-...++++.. ........+.+-..+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45779999999999999999999985433332 46777776665555555556666642 22233667777788888
Q ss_pred HHHhcCCeE
Q 036079 250 KKQLSGKKF 258 (1399)
Q Consensus 250 ~~~l~~k~~ 258 (1399)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 888887754
No 406
>PRK05973 replicative DNA helicase; Provisional
Probab=93.78 E-value=0.26 Score=52.55 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=32.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
...++.|.|.+|+|||++|.+++.... + .=..+++++.... ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHH
Confidence 446899999999999999999876432 2 2234667665544 4444444
No 407
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.78 E-value=0.16 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+++|+|..|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 408
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.78 E-value=0.18 Score=53.82 Aligned_cols=115 Identities=14% Similarity=0.199 Sum_probs=65.8
Q ss_pred ccccchhhHHHHHHHHhccCc-CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDL-RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
.++|..-..+.++..+.+-.. +...++=+++.+|.+|+||.-.|+.+++.....+-- ......+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 466766666667666654321 134567799999999999999999888642111100 00111122
Q ss_pred HhccCCCCCCcccHH----HHHHHHHHHhc-CCeEEEEEcccCccChhhHhhhcccCC
Q 036079 229 NSVASDQCTDKDDLN----LLQEKLKKQLS-GKKFLLVLDDVWNESYNYWSILSCPFE 281 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~----~~~~~l~~~l~-~k~~LiVlDdv~~~~~~~~~~l~~~~~ 281 (1399)
.....+ ....++ ++..+++..++ -+|-|+|+|+++.....-.+.+...+.
T Consensus 149 at~hFP---~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLHFP---HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhccCC---ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 222221 222232 34444444443 489999999998776655666554443
No 409
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.73 E-value=0.21 Score=54.06 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=30.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE 217 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 217 (1399)
+...++.|.|.+|+||||+|.+++.... ..-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 3567999999999999999998765321 22346788876433
No 410
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.71 E-value=0.4 Score=58.51 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58999888888877775421 23346889999999999999999873
No 411
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.71 E-value=0.086 Score=55.59 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=29.1
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcc
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDR 201 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 201 (1399)
+..++++.+... ..+..+|+|+|+||+|||||..++....+
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 445666666543 34668999999999999999999887433
No 412
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.69 E-value=0.14 Score=57.55 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 036079 179 ISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+++.|++|+||||+|+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 413
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.68 E-value=0.08 Score=56.53 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHH
Q 036079 159 EAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRI 223 (1399)
Q Consensus 159 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (1399)
.+++..+.. ..++..+|+|+|.||+|||||.-++......+++=-.++=|+-+.+++--.+
T Consensus 38 ~~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 345555543 3457789999999999999999998875444444334445555555543333
No 414
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.67 E-value=0.0046 Score=62.28 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=80.3
Q ss_pred ccccC-ccccCccccceeeccCccccccchhhhccccccEEEcCCccccccchhhhcccCcccEEEcCCCcccccCCccc
Q 036079 559 VSKLP-NEIGNLKHLRFLNLSGTEIQILPESINSLYNLHTILLENCHRLKKLCKDMGNLIKLHHLRNSNVDSLEEMPKGF 637 (1399)
Q Consensus 559 i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~ 637 (1399)
++.+| ..+.....-++||++.|++..+-..|+.++.|..||++. +.+..+|.+++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 34455 446777899999999999999989999999999999998 5789999999999999999998888 89999999
Q ss_pred ccccccCccceEEec
Q 036079 638 GKLTCLLTLCTFVVG 652 (1399)
Q Consensus 638 ~~L~~L~~L~l~~~~ 652 (1399)
+++++++.++.-.+.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 999999998775443
No 415
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.66 E-value=0.21 Score=58.37 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=54.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCC------CCCcccHHH---
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQ------CTDKDDLNL--- 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~--- 244 (1399)
+.+-++|.|.+|+|||||+.+++...... +=+.++++-+++.. .+.+++.++...=.... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44578999999999999999887532111 11356777777665 45666666665321110 001111111
Q ss_pred --HHHHHHHHh---cCCeEEEEEcccC
Q 036079 245 --LQEKLKKQL---SGKKFLLVLDDVW 266 (1399)
Q Consensus 245 --~~~~l~~~l---~~k~~LiVlDdv~ 266 (1399)
..-.+.+++ +++++|+++|++-
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchH
Confidence 122244454 6799999999993
No 416
>PRK15453 phosphoribulokinase; Provisional
Probab=93.65 E-value=0.33 Score=52.49 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=43.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC--CHHHHHHHH--HHhccC--CC-CCCcccHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF--DVFRISKSI--LNSVAS--DQ-CTDKDDLNLLQE 247 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i--l~~l~~--~~-~~~~~~~~~~~~ 247 (1399)
+..+|+|.|.+|+||||+|+.+.+ ..+..=..++.++...-. +..+.-..+ .+.-+. .. ..++.+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999999985 222111123344433222 322222211 111111 11 126667777777
Q ss_pred HHHHHhcC
Q 036079 248 KLKKQLSG 255 (1399)
Q Consensus 248 ~l~~~l~~ 255 (1399)
.++++.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776553
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.63 E-value=0.26 Score=54.12 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 216 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1399)
+...++.|.|.+|+|||++|.+++.... ..=..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 3567999999999999999999875321 1224677888764
No 418
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.62 E-value=0.11 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 419
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.60 E-value=1.3 Score=43.14 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccC-ChHHHHHHHHHHHHhhchHhHH
Q 036079 3 IIGEAVLTASFELLIKKLASLELFTQHEKLKADFMRWKDKMEMIQAVLADAEDRQTK-DKSVKKWLDKLQNLAYDVEDIL 81 (1399)
Q Consensus 3 ~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~-~~~~~~w~~~lr~~~~d~ed~l 81 (1399)
.++||+++++++.+...+... .......+.-++++.+.++.|.-++++.+..... +..-+.-++++.+...++++++
T Consensus 5 L~~gaalG~~~~eLlk~v~~~--~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVIDA--SKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 467888888888888777654 3333445666788999999999999988874422 3333777888888888999999
Q ss_pred HHHHH
Q 036079 82 DEFET 86 (1399)
Q Consensus 82 d~~~~ 86 (1399)
+.|..
T Consensus 83 ~k~sk 87 (147)
T PF05659_consen 83 EKCSK 87 (147)
T ss_pred HHhcc
Confidence 98753
No 420
>PRK08840 replicative DNA helicase; Provisional
Probab=93.59 E-value=1.6 Score=52.19 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=46.3
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
+.|.......+-+.+.+ -.....+.|-|.+|+|||++|..++.....+... .++|+ +-.-+..++...++..
T Consensus 197 ~~gi~TG~~~LD~~~~G-----~~~g~LiviaarPg~GKTafalnia~~~a~~~~~-~v~~f--SlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 197 VTGVDTGFTDLNKKTAG-----LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDK-PVLIF--SLEMPAEQLMMRMLAS 268 (464)
T ss_pred CCCcCCCcHHHHHhhcC-----CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCC-eEEEE--eccCCHHHHHHHHHHh
Confidence 34444444445444422 2344688899999999999998887643322222 34454 4446677888887776
Q ss_pred ccC
Q 036079 231 VAS 233 (1399)
Q Consensus 231 l~~ 233 (1399)
...
T Consensus 269 ~s~ 271 (464)
T PRK08840 269 LSR 271 (464)
T ss_pred hCC
Confidence 543
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.58 E-value=0.055 Score=68.61 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.2
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+.++++|+|+.|.||||+.+.+.-
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347899999999999999998874
No 422
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.56 E-value=0.28 Score=52.74 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=32.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
...++.|.|.+|+||||+|.+++.... +.. ..+++++.. .+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCC--CCHHHHHHHH
Confidence 345999999999999999877765321 222 345666633 3455555555
No 423
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.54 E-value=0.19 Score=62.50 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=57.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHH
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKL 249 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 249 (1399)
+..+++-|+|.+|+||||||.+++.... ..=..++|++..+.++.. .+++++..... .+...++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4568999999999999999988765322 222457899887777742 56666554211 233445555555
Q ss_pred HHHhc-CCeEEEEEcccC
Q 036079 250 KKQLS-GKKFLLVLDDVW 266 (1399)
Q Consensus 250 ~~~l~-~k~~LiVlDdv~ 266 (1399)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 467799999984
No 424
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.53 E-value=0.43 Score=55.29 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=62.0
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcc-----hh----ccCC-----------ceEEEE-----eCCCCCHHHHHHHHHHh
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDR-----VQ----RHFE-----------IKAWTC-----VSEEFDVFRISKSILNS 230 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~----~~f~-----------~~~wv~-----~~~~~~~~~~~~~il~~ 230 (1399)
-..|++||+.|+|||||.+-++-+.. +. .+|. ...|.. .-.+....+..+.++..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 35689999999999999988886531 11 1111 111100 01112345677778888
Q ss_pred ccCCCCCCcccHH-----HHHHHHHHHh-cCCeEEEEEcccCc-cChhhHhhhcccCCCCCCCcEEEEecCCh
Q 036079 231 VASDQCTDKDDLN-----LLQEKLKKQL-SGKKFLLVLDDVWN-ESYNYWSILSCPFEAVAPGSKIVVTTRNL 296 (1399)
Q Consensus 231 l~~~~~~~~~~~~-----~~~~~l~~~l-~~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtr~~ 296 (1399)
.+.....+..... +....+..++ -..+-++|||.--+ .+....+.+..++.. -.|. ||++|.+.
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe-~~Gg-vv~vSHDf 566 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE-FPGG-VVLVSHDF 566 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc-cCCc-eeeeechh
Confidence 7776432222222 2222333333 36788999997643 122333344443322 2454 55565553
No 425
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=2.1 Score=44.50 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=39.6
Q ss_pred CccccchhhHHHHHHHHhccCc-------CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC
Q 036079 149 AKVYGREKDKEAIVELLLRDDL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF 206 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f 206 (1399)
+++=|-+..++++++.+.-.-. -+-..++-|..+|++|.|||-+|++.+. +....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchH
Confidence 3567888889998888742211 0223567789999999999999999886 344444
No 426
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.17 Score=50.98 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=59.3
Q ss_pred EEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC--CHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF--DVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLS 254 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 254 (1399)
.+++|+|..|.|||||++.+.... ......+++...... ...+. ...+..-.. -... +...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G-~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGG-QRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEee-CCHH-HHHHHHHHHHHh
Confidence 689999999999999999998632 223445544322111 11111 111211100 1111 122223444455
Q ss_pred CCeEEEEEcccCc-cChhhHhhhcccCCCC-CCCcEEEEecCChhhhhc
Q 036079 255 GKKFLLVLDDVWN-ESYNYWSILSCPFEAV-APGSKIVVTTRNLGVTVN 301 (1399)
Q Consensus 255 ~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~-~~~s~iivTtr~~~~~~~ 301 (1399)
..+-++++|+... .+......+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5678899998743 2222233333322211 124568888887666544
No 427
>PRK06904 replicative DNA helicase; Validated
Probab=93.46 E-value=4.7 Score=48.45 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=47.2
Q ss_pred cccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHh
Q 036079 151 VYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNS 230 (1399)
Q Consensus 151 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 230 (1399)
..|-......+-+.+.+ -.+...+.|-|.+|+|||++|..++.....+.. ..++|+ +-.-+..++...++..
T Consensus 201 ~~Gi~TG~~~LD~~t~G-----l~~G~LiiIaarPg~GKTafalnia~~~a~~~g-~~Vl~f--SlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 201 VTGVTTGFTDLDKKTAG-----LQPSDLIIVAARPSMGKTTFAMNLCENAAMASE-KPVLVF--SLEMPAEQIMMRMLAS 272 (472)
T ss_pred CCCccCChHHHHHHHhc-----cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC-CeEEEE--eccCCHHHHHHHHHHh
Confidence 34444445555554422 124468889999999999999888764322222 234554 4556788888888777
Q ss_pred ccC
Q 036079 231 VAS 233 (1399)
Q Consensus 231 l~~ 233 (1399)
...
T Consensus 273 ~s~ 275 (472)
T PRK06904 273 LSR 275 (472)
T ss_pred hCC
Confidence 543
No 428
>PRK08149 ATP synthase SpaL; Validated
Probab=93.44 E-value=0.23 Score=57.58 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCcccH----
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASD-------QCTDKDDL---- 242 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 242 (1399)
+...++|+|..|+|||||+..++.... -+.++...+.... ++.++..+.+...... ..+++.-.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 445789999999999999999986321 2333444444433 4556666666543221 11111111
Q ss_pred HHHHHHHHHHh--cCCeEEEEEcccCc
Q 036079 243 NLLQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 243 ~~~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
....-.+.+++ ++|++|+++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11222233444 58999999999943
No 429
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.43 E-value=0.14 Score=59.83 Aligned_cols=50 Identities=28% Similarity=0.249 Sum_probs=34.8
Q ss_pred CccccchhhHHHHHHHHhc----cCc------CCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLR----DDL------RADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~----~~~------~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+||.+..++.+...+.. -.. +.....+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999988877655521 000 0011235689999999999999999986
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.43 E-value=0.21 Score=56.36 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=48.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..++|+++|+.||||||-...++........=..++.++.+. .....+-++.-++-++.+-. ...+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 368999999999999964444443211112223456665543 33455555556666655543 344555555555433
Q ss_pred cCCeEEEEEccc
Q 036079 254 SGKKFLLVLDDV 265 (1399)
Q Consensus 254 ~~k~~LiVlDdv 265 (1399)
+++ =+|.+|-+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 35556655
No 431
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.42 E-value=0.65 Score=50.98 Aligned_cols=141 Identities=10% Similarity=0.010 Sum_probs=72.0
Q ss_pred HHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhc-cCCceEEEEeCCCCCHHHHHHHHHHhccCCCC
Q 036079 158 KEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HFEIKAWTCVSEEFDVFRISKSILNSVASDQC 236 (1399)
Q Consensus 158 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 236 (1399)
-+++...+.. +.-.....++|+.|+||+++|..++...-... ...|..| .....+|... +.....
T Consensus 6 ~~~L~~~i~~-----~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~-~~~~HPD~~~--------i~p~~~ 71 (290)
T PRK05917 6 WEALIQRVRD-----QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKI-SQKIHPDIHE--------FSPQGK 71 (290)
T ss_pred HHHHHHHHHc-----CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHH-hcCCCCCEEE--------EecCCC
Confidence 4556666643 23456788999999999999988875321100 0000000 0000000000 000000
Q ss_pred CCcccHHHHHHHHHHHh-----cCCeEEEEEcccCccChhhHhhhcccCCCCCCCcEEEEecCC-hhhhhc-cCCCCcee
Q 036079 237 TDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNESYNYWSILSCPFEAVAPGSKIVVTTRN-LGVTVN-MGADPAYQ 309 (1399)
Q Consensus 237 ~~~~~~~~~~~~l~~~l-----~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtr~-~~~~~~-~~~~~~~~ 309 (1399)
...-..++..+ +.+.+ .+++-++|+|+++......+..+...+.....++.+|++|.. ..+... .+....+.
T Consensus 72 ~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~ 150 (290)
T PRK05917 72 GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH 150 (290)
T ss_pred CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEE
Confidence 00012333222 22222 356668999999888888888887777766667766666655 333222 22234566
Q ss_pred cCCC
Q 036079 310 LKEL 313 (1399)
Q Consensus 310 l~~l 313 (1399)
+.++
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 6655
No 432
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.75 Score=55.35 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=58.0
Q ss_pred ccCCccccchhhHHHHH---HHHhccCc---CCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC
Q 036079 146 VNEAKVYGREKDKEAIV---ELLLRDDL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD 219 (1399)
Q Consensus 146 ~~~~~~vGr~~~~~~l~---~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1399)
+.-.++.|.++.++++. +.|..... -+..-++-|..+|++|.|||.||++++-...+- | .+.|..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch--
Confidence 44567889887665554 55543210 022346778999999999999999999854432 2 122221
Q ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 220 VFRISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 220 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
+.++.+-+- ......+...+.-+.-+++|++|.++.
T Consensus 218 ------~FVemfVGv------GAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 218 ------DFVEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred ------hhhhhhcCC------CcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 122222111 112233444555556689999998743
No 433
>PRK03839 putative kinase; Provisional
Probab=93.40 E-value=0.054 Score=56.02 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999973
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.38 E-value=0.39 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+..+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999874
No 435
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.37 E-value=0.35 Score=57.53 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=52.7
Q ss_pred hHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCC
Q 036079 157 DKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQC 236 (1399)
Q Consensus 157 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 236 (1399)
.+..+-+.|.. +-....++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -++.++....
T Consensus 79 Gi~~LD~vLgG----Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~ 149 (454)
T TIGR00416 79 GFGELDRVLGG----GIVPGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEP 149 (454)
T ss_pred CcHHHHHHhcC----CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChH
Confidence 34555555532 22456799999999999999999997643221 134678765433 333322 2233332211
Q ss_pred C----CcccHHHHHHHHHHHhcCCeEEEEEccc
Q 036079 237 T----DKDDLNLLQEKLKKQLSGKKFLLVLDDV 265 (1399)
Q Consensus 237 ~----~~~~~~~~~~~l~~~l~~k~~LiVlDdv 265 (1399)
. ...+.+++.+.+.+ .+.-++|+|.+
T Consensus 150 ~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 150 NLYVLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred HeEEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 0 12234444433322 24557888877
No 436
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.37 E-value=0.072 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.4
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
++++|+|+.|.||||+.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999874
No 437
>PRK04040 adenylate kinase; Provisional
Probab=93.37 E-value=0.059 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 438
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.34 E-value=0.2 Score=58.23 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=48.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccC-----CCCCCcccHH-----H
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVAS-----DQCTDKDDLN-----L 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~-----~ 244 (1399)
....++|+|..|+|||||++.+..... ....++|...-+..++.+.....+..... -...+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345789999999999999998886322 22234444332344555444444333211 1110111111 1
Q ss_pred HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 245 LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 ~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+++||+-.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 112233443 48999999999933
No 439
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.28 E-value=0.19 Score=49.15 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 173 DDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..+..+|.++|.+|.||||+|.+++..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 346689999999999999999999873
No 440
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.27 E-value=0.14 Score=47.77 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHhccCc-CCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 150 KVYGREKDKEAIVELLLRDDL-RADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++|-.-..+.+++.+...-. ....++-|++.+|++|+|||-+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 467766556655555543211 14567789999999999999998888764
No 441
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.26 E-value=0.32 Score=56.59 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=52.0
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHHHHhccCCC------CCCcccHHH---
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSILNSVASDQ------CTDKDDLNL--- 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~~--- 244 (1399)
+...++|+|..|+|||||++.++.... -+.++++-+++... +.+...+.+..-+... ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999986322 24556666766653 4455544444321110 001111111
Q ss_pred --HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 245 --LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 --~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 112234444 58999999999933
No 442
>PRK00625 shikimate kinase; Provisional
Probab=93.23 E-value=0.058 Score=54.73 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|.|+||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 443
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.21 E-value=0.41 Score=56.94 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=47.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC----CcccHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT----DKDDLNLLQEKLK 250 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 250 (1399)
...++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++..... ...+.+++.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 456999999999999999999987432 22235678776443 3333222 4445432110 1123444444332
Q ss_pred HHhcCCeEEEEEccc
Q 036079 251 KQLSGKKFLLVLDDV 265 (1399)
Q Consensus 251 ~~l~~k~~LiVlDdv 265 (1399)
+ .+.-+||+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 35557888887
No 444
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.21 E-value=0.48 Score=52.76 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=37.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSIL 228 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il 228 (1399)
+.+.++|.|..|+|||+|++++++.. +-+.++++-+++.. .+.+++.++-
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 44578999999999999999999742 33568888888765 3556666653
No 445
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.20 E-value=0.13 Score=57.42 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=34.7
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
.+++.+.|.|||||||+|.+.+-. .......++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 479999999999999999886642 2223344677777776666665544
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.069 Score=52.17 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 036079 178 VISINGMGGVGKTTLAQLVY 197 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~ 197 (1399)
.|+|+|.||+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 447
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.19 E-value=2.2 Score=51.05 Aligned_cols=73 Identities=18% Similarity=0.092 Sum_probs=45.7
Q ss_pred ccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhc
Q 036079 152 YGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSV 231 (1399)
Q Consensus 152 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 231 (1399)
.|.......+-+.+.+ -....++.|.|.+|+|||++|..++.+...+..+ .++|++ -..+..++...++...
T Consensus 175 ~gi~tG~~~LD~~~~G-----~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNG-----LVKGDLIVIGARPSMGKTTLALNIAENVALREGK-PVLFFS--LEMSAEQLGERLLASK 246 (421)
T ss_pred cceeCCChhHHHHhcC-----CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-cEEEEE--CCCCHHHHHHHHHHHH
Confidence 3444444555554431 1244688999999999999999998643323232 456665 3456777777777654
Q ss_pred c
Q 036079 232 A 232 (1399)
Q Consensus 232 ~ 232 (1399)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 448
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.14 E-value=0.048 Score=30.94 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=4.6
Q ss_pred cceeeccCcccccc
Q 036079 572 LRFLNLSGTEIQIL 585 (1399)
Q Consensus 572 L~~L~Ls~n~i~~l 585 (1399)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.13 E-value=0.071 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..++|+|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999985
No 450
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.10 E-value=0.24 Score=62.78 Aligned_cols=131 Identities=16% Similarity=0.063 Sum_probs=71.1
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSIL 228 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 228 (1399)
+.++|....+.++.+...... .....|.|+|..|+||+++|+.+++... + .-...+.|++..-. ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s~-r-~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNESE-R-AAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhCC-c-cCCCeEEEECCCCC-hHHHHHHhc
Confidence 458899988888888776532 1223478999999999999999987321 1 11122344444332 222223333
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCccChhhHhhhcccCCCCC-----------CCcEEEEecCC
Q 036079 229 NSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNESYNYWSILSCPFEAVA-----------PGSKIVVTTRN 295 (1399)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtr~ 295 (1399)
............ ..+ -....-.|+||++.+........+...+.... ...|||.||..
T Consensus 398 g~~~~~~~~~~~------g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSENGRL------SKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccCCCC------Cce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 222111000000 000 01233468999998877666666655443221 13467777664
No 451
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.10 E-value=0.097 Score=56.52 Aligned_cols=88 Identities=25% Similarity=0.255 Sum_probs=50.6
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCC--------------CCC-
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQ--------------CTD- 238 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------------~~~- 238 (1399)
+...++.|.|.+|+|||++|.+++.....+ .=..++|++..+.. .++.+.+ +.++... ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEeccccc
Confidence 355799999999999999999987632222 12457788765543 3333332 2332210 000
Q ss_pred ----cccHHHHHHHHHHHhcC-CeEEEEEccc
Q 036079 239 ----KDDLNLLQEKLKKQLSG-KKFLLVLDDV 265 (1399)
Q Consensus 239 ----~~~~~~~~~~l~~~l~~-k~~LiVlDdv 265 (1399)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23556666666665543 4467888876
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.07 E-value=0.6 Score=54.38 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=50.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC-CCHHHHHHHHHHhccCC-------CCCCcccH----
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE-FDVFRISKSILNSVASD-------QCTDKDDL---- 242 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~---- 242 (1399)
....++|+|..|+|||||++.++..... ...++. -+++. ....+.+.+.+..-+.. ..+++...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 4457899999999999999999874321 122332 23333 55666666555542211 11111111
Q ss_pred HHHHHHHHHHh--cCCeEEEEEcccCc
Q 036079 243 NLLQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 243 ~~~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
......+.+++ +++++|+|+||+-.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11222333444 47999999999944
No 453
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.07 E-value=0.38 Score=56.08 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=53.0
Q ss_pred CcEEEEEECCCCChHHHHH-HHHhcCcch-----hccCCceEEEEeCCCCCHHHHHHHHHHhccCCC--------CCCcc
Q 036079 175 GFSVISINGMGGVGKTTLA-QLVYNDDRV-----QRHFEIKAWTCVSEEFDVFRISKSILNSVASDQ--------CTDKD 240 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------~~~~~ 240 (1399)
+..-++|.|..|+|||+|| ..+.+...+ .+.-+.++++.++++.+...-+.+.+++-+.-. .+++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4456799999999999997 555653322 123356788888887654333444444433110 10111
Q ss_pred cHHH----HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 241 DLNL----LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 241 ~~~~----~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
...- ..-.+.+++ +++.+|+|+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1110 111233333 58999999999944
No 454
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.06 E-value=0.13 Score=52.92 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHH
Q 036079 178 VISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVF 221 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1399)
.|+|+|-||+||||+|..++.....++.| .+.-|++..+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH
Confidence 58999999999999998855422222223 35556666666544
No 455
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.04 E-value=0.36 Score=56.07 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=52.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCC------CCCcccHHH---
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQ------CTDKDDLNL--- 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~--- 244 (1399)
+...++|.|..|+|||||.+.++.... -+.++++-+++.. .+.++....+..-+... ..+......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446889999999999999999997422 2567788787765 34454444333211110 001111111
Q ss_pred --HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 245 --LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 --~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233444 58999999999943
No 456
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.04 E-value=0.55 Score=63.04 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.++-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4667899999999999999999985
No 457
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.04 E-value=0.16 Score=59.85 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceE-EEEeCCCCC-HHHHHHHHHHhccCCCCC
Q 036079 160 AIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKA-WTCVSEEFD-VFRISKSILNSVASDQCT 237 (1399)
Q Consensus 160 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~il~~l~~~~~~ 237 (1399)
++++++.. -....-..|+|++|+|||||++.+++... ..+-++.+ .+-+++... +.++.+.+=.++-....+
T Consensus 405 RvIDll~P-----IGkGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMP-----IGKGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeecc-----cccCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 45555543 23445678999999999999999987321 11223333 455555543 223322221111111111
Q ss_pred CcccH----HHHHHHHHHHh--cCCeEEEEEcccC
Q 036079 238 DKDDL----NLLQEKLKKQL--SGKKFLLVLDDVW 266 (1399)
Q Consensus 238 ~~~~~----~~~~~~l~~~l--~~k~~LiVlDdv~ 266 (1399)
.+... ..+.-.+.+++ .++.+||++|++.
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 11111 11222233444 5899999999993
No 458
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.04 E-value=0.22 Score=57.94 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=55.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCC-HHHHHHHHHHhccCCC------CCCcccHH----
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFD-VFRISKSILNSVASDQ------CTDKDDLN---- 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~---- 243 (1399)
+.+-++|.|.+|+|||+|+.++..... +.+-+.++|+-+++... ..++..++...=.... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 445789999999999999999876422 22346788888877753 4556666554311110 00111111
Q ss_pred -HHHHHHHHHh---cCCeEEEEEcccCc
Q 036079 244 -LLQEKLKKQL---SGKKFLLVLDDVWN 267 (1399)
Q Consensus 244 -~~~~~l~~~l---~~k~~LiVlDdv~~ 267 (1399)
...-.+.+++ +++++|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1222344554 46999999999943
No 459
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.02 E-value=0.1 Score=59.68 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=59.4
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHh
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCTDKDDLNLLQEKLKKQL 253 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 253 (1399)
..++-+-|||.-|.|||.|.-.+|+...++.. ......+.+.++-+.+..-.. ..+.+.. +.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~----va~~l 124 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRG-QDDPLPQ----VADEL 124 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhC-CCccHHH----HHHHH
Confidence 35678999999999999999999985433110 111222344444444332211 2233333 33444
Q ss_pred cCCeEEEEEcccCccChhhHhhhcccCCCC-CCCcEEEEecCChhh
Q 036079 254 SGKKFLLVLDDVWNESYNYWSILSCPFEAV-APGSKIVVTTRNLGV 298 (1399)
Q Consensus 254 ~~k~~LiVlDdv~~~~~~~~~~l~~~~~~~-~~~s~iivTtr~~~~ 298 (1399)
.++..||.||++.-.+..+--.+...|... ..|. |+|+|.+...
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPP 169 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCCh
Confidence 566779999998665544332333333222 3444 6666665443
No 460
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.82 Score=47.14 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDD 200 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 200 (1399)
...+.+|.|+.|.||||||..+.-++
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999997554
No 461
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.99 E-value=0.35 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
.+..++.|+|.+|+|||||+..+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 462
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.95 E-value=0.68 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|..|.|||||++.++-.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999853
No 463
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.95 E-value=0.12 Score=57.22 Aligned_cols=42 Identities=29% Similarity=0.225 Sum_probs=35.3
Q ss_pred CCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCC
Q 036079 174 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEE 217 (1399)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 217 (1399)
+..+++.|+|.+|+|||++|.++.. +.......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 5678999999999999999999998 44455788999987665
No 464
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.91 E-value=0.32 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998864
No 465
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.88 E-value=0.55 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
..+++|+|+.|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 466
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.87 E-value=0.31 Score=53.20 Aligned_cols=55 Identities=29% Similarity=0.313 Sum_probs=39.4
Q ss_pred CCccccchhhHHH---HHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccC
Q 036079 148 EAKVYGREKDKEA---IVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF 206 (1399)
Q Consensus 148 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f 206 (1399)
.+.|||..+..+. +++++.+. .-..+.|.|+|++|.|||+||..++...-..-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~g----k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQG----KMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhC----cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4569998766653 55666542 2356889999999999999999999744333344
No 467
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.83 E-value=0.45 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|+.|.|||||++.++--
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 468
>PF13245 AAA_19: Part of AAA domain
Probab=92.79 E-value=0.14 Score=43.58 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=17.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++.|.|++|.|||+++.+...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788899999999955544443
No 469
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.15 Score=56.15 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+-|..+|++|.|||-||++|+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHH
Confidence 5788999999999999999997
No 470
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.76 E-value=0.11 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.5
Q ss_pred EEEEEECCCCChHHHHHHHHhc
Q 036079 177 SVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 471
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.22 Score=52.60 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=59.3
Q ss_pred CccccchhhHHHHHHHHhccC------cCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 149 AKVYGREKDKEAIVELLLRDD------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
.++.|-|...+.+.+...-.- ......-+-|.++|++|.||+-||++|+.... . -|.+++..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH-----
Confidence 356787877777776653110 00112357889999999999999999997432 2 23344433
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhc-CCeEEEEEcccCc
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLS-GKKFLLVLDDVWN 267 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LiVlDdv~~ 267 (1399)
+++...-++ .+.+...+.+..+ .|+-+|++|.++.
T Consensus 201 ---DLvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 233322222 1345555555544 6999999999854
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.72 E-value=0.086 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
++++|+|++|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 473
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.69 E-value=0.32 Score=56.57 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=50.7
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCC------CCCCcccHHHH--
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASD------QCTDKDDLNLL-- 245 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~~-- 245 (1399)
....++|+|..|+|||||++.+.... +.+..+++.+++.. .+.+.+.+..+.=... ...+.......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44588999999999999999998632 23445566555543 3445555543210000 00011111111
Q ss_pred ---HHHHHHHh--cCCeEEEEEcccCc
Q 036079 246 ---QEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 246 ---~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
.-.+.+++ +++++|+++||+..
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 12234444 48999999999943
No 474
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.68 E-value=0.19 Score=57.66 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=46.8
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISK 225 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1399)
.++|+++....+...+... +.+.+.|++|+|||+||+.++.. .. ...+++.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcC
Confidence 3889888888887777643 35889999999999999999973 22 2345677777766666543
No 475
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.67 E-value=0.16 Score=50.12 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 156 KDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 156 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+.++++.+++.. ++++++|..|||||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 457888888832 68999999999999999999874
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.65 E-value=0.43 Score=57.81 Aligned_cols=61 Identities=18% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHH
Q 036079 158 KEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKS 226 (1399)
Q Consensus 158 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1399)
+..+-+.|.. +=....++.|.|++|+||||||.+++.... ..=..+++++..+. ..++...
T Consensus 249 i~~lD~~lgG----G~~~gs~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGG----GFFKDSIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred hHhHHHHhcC----CccCCcEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCC--HHHHHHH
Confidence 3445555532 234567999999999999999999987432 22345677665444 4444444
No 477
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.65 E-value=0.52 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhc
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...+++|+|+.|.|||||.+.+..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999975
No 478
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.65 E-value=0.22 Score=57.62 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=55.1
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchh--ccCC---------ceEEEEeCCCCCHHHHHHHHHHhcc-CCC------C
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQ--RHFE---------IKAWTCVSEEFDVFRISKSILNSVA-SDQ------C 236 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~f~---------~~~wv~~~~~~~~~~~~~~il~~l~-~~~------~ 236 (1399)
+.+-++|.|-+|+|||||+.++++..... ...| .++++.+++.....+.+.+.+..-+ ... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 34567999999999999999998643310 0012 5677778887666665555555544 111 0
Q ss_pred CCcccHHH-----HHHHHHHHh---cCCeEEEEEcccCc
Q 036079 237 TDKDDLNL-----LQEKLKKQL---SGKKFLLVLDDVWN 267 (1399)
Q Consensus 237 ~~~~~~~~-----~~~~l~~~l---~~k~~LiVlDdv~~ 267 (1399)
.+.....+ ..-.+.+++ +++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 01111111 112234444 46999999999943
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.65 E-value=0.47 Score=50.40 Aligned_cols=118 Identities=13% Similarity=0.056 Sum_probs=58.4
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCCCC--C----cccHHHHHHH
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQCT--D----KDDLNLLQEK 248 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~----~~~~~~~~~~ 248 (1399)
..++++|.|+.|.||||+.+.+.-.. +..+--+.+|..-. .-..+.+|+..++..+.. . ..++.++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~----~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSA----TLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCce----EEeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999999887521 11111112222100 001122222223222110 0 1122223333
Q ss_pred HHHHhcCCeEEEEEcccCccC----hh--hHhhhcccCCCCCCCcEEEEecCChhhhhc
Q 036079 249 LKKQLSGKKFLLVLDDVWNES----YN--YWSILSCPFEAVAPGSKIVVTTRNLGVTVN 301 (1399)
Q Consensus 249 l~~~l~~k~~LiVlDdv~~~~----~~--~~~~l~~~~~~~~~~s~iivTtr~~~~~~~ 301 (1399)
++. .+++-|+++|+.-... .. .|. +...+... .++.+|++|.+..++..
T Consensus 105 l~~--~~~~sLvllDE~~~gT~~~d~~~i~~~-il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 105 LSN--CTSRSLVILDELGRGTSTHDGIAIAYA-TLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHh--CCCCeEEEEccCCCCCChhhHHHHHHH-HHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 322 2579999999973311 11 122 22223222 57889999999887543
No 480
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.65 E-value=0.18 Score=62.03 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=55.1
Q ss_pred CCccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHH
Q 036079 148 EAKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSI 227 (1399)
Q Consensus 148 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1399)
-..++|.++.++.+...+... +.+.|+|++|+||||+|+.+++.. ...+++..+|..- ...+..+.++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHH
Confidence 346899999888888877432 368899999999999999998742 2334577778655 334666777777
Q ss_pred HHhccC
Q 036079 228 LNSVAS 233 (1399)
Q Consensus 228 l~~l~~ 233 (1399)
+.+.+.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 765543
No 481
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.64 E-value=0.1 Score=50.44 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=31.5
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCC
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASD 234 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 234 (1399)
.++++|+|.+|+||||+.+.+.... +..+ -.+.-++..+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-----------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-----------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhce-----------eeeHhHHHHHHHHHhCCc
Confidence 5799999999999999998887632 1111 113445666666666554
No 482
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.64 E-value=0.085 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEECCCCChHHHHHHHHhcC
Q 036079 177 SVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.61 E-value=0.12 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcC
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5579999999999999999999863
No 484
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=92.61 E-value=0.58 Score=54.05 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=69.5
Q ss_pred ccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-------CHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-------DVFR 222 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-------~~~~ 222 (1399)
.-|||+.+++.+.+.|..- .+++..+-.|.|.=|.|||.+.+.+..... ...| .++.|.++... ...+
T Consensus 26 ~~VGr~~e~~~l~~~l~~v---~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~-~~~f-vvs~v~ls~e~~lh~~~g~~~~ 100 (416)
T PF10923_consen 26 IAVGREREIEALDRDLDRV---ADGGSSFKFIRGEYGSGKTFFLRLIRERAL-EKGF-VVSEVDLSPERPLHGTGGQLEA 100 (416)
T ss_pred eeechHHHHHHHHHHHHHH---hCCCCeEEEEEeCCCCcHHHHHHHHHHHHH-HcCC-EEEEEecCCCcccccccccHHH
Confidence 4799999999999988643 345667889999999999999999887432 3334 46677776543 4668
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHH
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLK 250 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~ 250 (1399)
++++|++.+.....++...+..+.+.+-
T Consensus 101 ~Yr~l~~nL~t~~~p~G~al~~ild~wi 128 (416)
T PF10923_consen 101 LYRELMRNLSTKTKPEGGALRSILDRWI 128 (416)
T ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHH
Confidence 9999999998876544444555544443
No 485
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.60 E-value=0.085 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.1
Q ss_pred cEEEEEECCCCChHHHHHHHHhc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999997
No 486
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.59 E-value=0.23 Score=60.13 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhcC
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
..++|....+.++.+.+..-. .....|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 358999999988888875432 23356899999999999999999963
No 487
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.55 E-value=0.073 Score=55.34 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 488
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.54 E-value=1 Score=54.33 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=71.4
Q ss_pred cEEEEEECCCCChHHHHHHHHhcCcc-hhccC-----CceEEEEeCC-----C----------C-C-HHHHHHHHHHhcc
Q 036079 176 FSVISINGMGGVGKTTLAQLVYNDDR-VQRHF-----EIKAWTCVSE-----E----------F-D-VFRISKSILNSVA 232 (1399)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~f-----~~~~wv~~~~-----~----------~-~-~~~~~~~il~~l~ 232 (1399)
...|+|+|+.|+|||||.+.+..... ..+.. -.+.|+.-.. . + + ...-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 34689999999999999999954211 11101 1122222111 0 0 1 1344555555555
Q ss_pred CCCCCCcccH------HHHHHHHHHHhcCCeEEEEEcccCc-cChhhHhhhcccCCCCCCCcEEEEecCChhhhhccCCC
Q 036079 233 SDQCTDKDDL------NLLQEKLKKQLSGKKFLLVLDDVWN-ESYNYWSILSCPFEAVAPGSKIVVTTRNLGVTVNMGAD 305 (1399)
Q Consensus 233 ~~~~~~~~~~------~~~~~~l~~~l~~k~~LiVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtr~~~~~~~~~~~ 305 (1399)
.......... +...-.+...+-.++=++|||.=-+ .+.+..+.+..++... +| .||+.|.++....... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-c
Confidence 5432111111 1222334445567888999997533 2334445555554433 34 4888899988877665 3
Q ss_pred CceecCC
Q 036079 306 PAYQLKE 312 (1399)
Q Consensus 306 ~~~~l~~ 312 (1399)
..+.+++
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 3455554
No 489
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.53 E-value=0.45 Score=56.03 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=52.8
Q ss_pred CcEEEEEECCCCChHHHHH-HHHhcCcchhccCCc-eEEEEeCCCC-CHHHHHHHHHHhccCC-------CCCCcccHHH
Q 036079 175 GFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEEF-DVFRISKSILNSVASD-------QCTDKDDLNL 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~~ 244 (1399)
+..-++|.|..|+|||||| ..+.+. ..-+. ++++.++++. .+.++...+.+.=... ..+++....-
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQ----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHh----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 4456899999999999997 466662 23354 6788888775 4556666655431111 0111111111
Q ss_pred ----HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 245 ----LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 ----~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+|+||+..
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 112234444 58999999999944
No 490
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.48 E-value=0.38 Score=55.98 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=48.6
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCC-CCCHHHHHHHHHHhccCCC------CCCcccHHH---
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-EFDVFRISKSILNSVASDQ------CTDKDDLNL--- 244 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~~~~--- 244 (1399)
+...++|+|..|+|||||++.+..... . +..+.+.++. ...+.++....+..-+... ..+.....+
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 345789999999999999998886322 1 2223333333 3334555554443321110 001111111
Q ss_pred --HHHHHHHHh--cCCeEEEEEcccCc
Q 036079 245 --LQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 245 --~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
..-.+.+++ +++++|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112234444 57999999999943
No 491
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.46 E-value=0.2 Score=51.53 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=31.0
Q ss_pred CccccchhhHHHHHHHHhccCcCCCCCcEEEEEECCCCChHHHHHHHHhc
Q 036079 149 AKVYGREKDKEAIVELLLRDDLRADDGFSVISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 149 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.+++|-+..+..+.-.... ..-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3578888887777665542 35789999999999999999964
No 492
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.45 E-value=0.082 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 036079 178 VISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~~ 199 (1399)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.44 E-value=0.083 Score=55.68 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 494
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.44 E-value=0.31 Score=52.01 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 036079 178 VISINGMGGVGKTTLAQLVYN 198 (1399)
Q Consensus 178 vv~I~G~gGiGKTtLa~~~~~ 198 (1399)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 495
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=1.6 Score=52.32 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=54.7
Q ss_pred ccccchhhHHHHHHHHhccCc------C-CCCCcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHH
Q 036079 150 KVYGREKDKEAIVELLLRDDL------R-ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFR 222 (1399)
Q Consensus 150 ~~vGr~~~~~~l~~~L~~~~~------~-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1399)
++-|..+.++.+.+.+.-... . +-.-..-|.++|++|.|||-||.+++..- . .-++++.++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~-~~fisvKGP----- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------N-LRFISVKGP----- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------C-eeEEEecCH-----
Confidence 355666666655555532110 0 11223467899999999999999998631 1 224566554
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHhcCCeEEEEEcccCc
Q 036079 223 ISKSILNSVASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 267 (1399)
Q Consensus 223 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LiVlDdv~~ 267 (1399)
+++...-+. +.+...+.+.+.-.-|++++++|.++.
T Consensus 736 ---ElL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 736 ---ELLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred ---HHHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccc
Confidence 233222111 112233333333446999999999865
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.42 E-value=0.29 Score=49.39 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=44.5
Q ss_pred EEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCCCHHHHHHHHHHhccCCC--CCCcccHHHHHHHHHHHhcCC
Q 036079 179 ISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEFDVFRISKSILNSVASDQ--CTDKDDLNLLQEKLKKQLSGK 256 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~l~~~l~~k 256 (1399)
+.|.|.+|+|||++|.++... ....++++.-.+.++. +....|.+...... ....+....+.+.+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999999863 2235677766666654 34444433222221 11112222333333222 2 3
Q ss_pred eEEEEEccc
Q 036079 257 KFLLVLDDV 265 (1399)
Q Consensus 257 ~~LiVlDdv 265 (1399)
.-.|++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999986
No 497
>PRK05922 type III secretion system ATPase; Validated
Probab=92.39 E-value=0.44 Score=55.37 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=49.9
Q ss_pred CcEEEEEECCCCChHHHHHHHHhcCcchhccCCceEEEEeCCCC-CHHHHHHHHHHhccCCCC------CCcccHH----
Q 036079 175 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEEF-DVFRISKSILNSVASDQC------TDKDDLN---- 243 (1399)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~------~~~~~~~---- 243 (1399)
+...++|+|..|+|||||.+.+.... ..+..+++.+++.. ...+.+.+.......... .+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34568999999999999999998632 22334444444433 334555454433322110 0111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEcccCc
Q 036079 244 -LLQEKLKKQL--SGKKFLLVLDDVWN 267 (1399)
Q Consensus 244 -~~~~~l~~~l--~~k~~LiVlDdv~~ 267 (1399)
...-.+.+++ +++++|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122234444 48999999999943
No 498
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.35 E-value=0.095 Score=29.75 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=11.7
Q ss_pred CcccEEEecCCcccccC
Q 036079 547 PRLRVFSLHGYCVSKLP 563 (1399)
Q Consensus 547 ~~Lr~L~L~~n~i~~lp 563 (1399)
++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 499
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.027 Score=56.23 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=41.2
Q ss_pred CCCCCcEEEecCCCCCcccchhhhhcCCCCccEEeecCCCCccccc--cccccCccceeeeccccCc
Q 036079 1053 LPSRLRTIEIEGCYALKCLPEAWMENSSTSLESLNIYNCNSLTHIA--RIQLAPSLKRLIINSCHNL 1117 (1399)
Q Consensus 1053 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~--~~~~~~~L~~L~l~~c~~l 1117 (1399)
.++.++.|.+.+|..+.+.....+.+..++|+.|+|++|+.+++.+ .+..+++|+.|.+.+.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3445566666666666666555555566777777777777777644 3566677777777665544
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.32 E-value=0.48 Score=44.40 Aligned_cols=21 Identities=57% Similarity=0.830 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q 036079 179 ISINGMGGVGKTTLAQLVYND 199 (1399)
Q Consensus 179 v~I~G~gGiGKTtLa~~~~~~ 199 (1399)
+++.|.||+||||++..++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
Done!